Query 013007
Match_columns 451
No_of_seqs 447 out of 3453
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 20:28:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d2e_A Elongation factor TU (E 100.0 9.2E-69 3.1E-73 538.3 45.2 386 63-451 1-387 (397)
2 2c78_A Elongation factor TU-A; 100.0 3.9E-68 1.3E-72 535.6 45.1 390 59-451 5-405 (405)
3 3j2k_7 ERF3, eukaryotic polype 100.0 4.2E-66 1.4E-70 524.4 46.7 379 61-451 13-439 (439)
4 3avx_A Elongation factor TS, e 100.0 8.3E-65 2.8E-69 547.0 43.6 387 61-451 292-678 (1289)
5 1f60_A Elongation factor EEF1A 100.0 7.8E-65 2.7E-69 517.7 36.6 380 61-450 3-440 (458)
6 1jny_A EF-1-alpha, elongation 100.0 4.5E-64 1.6E-68 509.8 38.2 379 62-450 3-428 (435)
7 3p26_A Elongation factor 1 alp 100.0 8.2E-63 2.8E-67 507.0 42.0 383 59-450 27-476 (483)
8 3mca_A HBS1, elongation factor 100.0 6.4E-64 2.2E-68 524.3 27.9 380 60-450 172-592 (592)
9 1r5b_A Eukaryotic peptide chai 100.0 2.4E-63 8.2E-68 507.9 28.1 377 62-451 40-467 (467)
10 3izq_1 HBS1P, elongation facto 100.0 5.7E-62 2E-66 510.8 32.7 382 60-450 162-610 (611)
11 1zun_B Sulfate adenylate trans 100.0 8.9E-59 3E-63 471.0 37.3 374 62-448 21-434 (434)
12 2elf_A Protein translation elo 100.0 1.1E-58 3.9E-63 458.8 32.5 331 67-447 23-370 (370)
13 1kk1_A EIF2gamma; initiation o 100.0 2.4E-57 8.1E-62 457.7 42.6 351 62-447 7-409 (410)
14 1wb1_A Translation elongation 100.0 1.3E-60 4.5E-65 488.9 18.3 358 62-450 16-394 (482)
15 1s0u_A EIF-2-gamma, translatio 100.0 1E-57 3.4E-62 459.9 37.8 351 62-447 5-407 (408)
16 3sjy_A Translation initiation 100.0 3.2E-55 1.1E-59 441.0 37.9 361 62-447 5-402 (403)
17 3vqt_A RF-3, peptide chain rel 100.0 3.2E-41 1.1E-45 349.4 23.7 274 63-355 29-401 (548)
18 2ywe_A GTP-binding protein LEP 100.0 2.9E-38 1E-42 328.0 28.3 269 63-355 4-281 (600)
19 4fn5_A EF-G 1, elongation fact 100.0 3.8E-38 1.3E-42 337.1 24.1 273 63-355 11-405 (709)
20 3cb4_D GTP-binding protein LEP 100.0 2.6E-37 9E-42 321.6 28.9 268 64-355 3-279 (599)
21 3tr5_A RF-3, peptide chain rel 100.0 7E-37 2.4E-41 315.2 25.4 272 64-354 12-382 (528)
22 3j25_A Tetracycline resistance 100.0 7.6E-40 2.6E-44 345.7 1.8 268 65-354 2-330 (638)
23 2h5e_A Peptide chain release f 100.0 2.9E-36 1E-40 310.9 21.6 274 63-355 11-384 (529)
24 2rdo_7 EF-G, elongation factor 100.0 3.2E-35 1.1E-39 313.2 29.7 270 63-354 8-401 (704)
25 3e1y_E Eukaryotic peptide chai 100.0 1.7E-35 5.9E-40 268.0 20.0 179 262-451 3-201 (204)
26 1dar_A EF-G, elongation factor 100.0 2.8E-34 9.6E-39 305.6 30.0 271 63-355 10-394 (691)
27 2xex_A Elongation factor G; GT 100.0 7.4E-34 2.5E-38 302.4 26.0 270 63-354 8-393 (693)
28 2dy1_A Elongation factor G; tr 100.0 5.1E-34 1.8E-38 302.6 24.6 271 63-355 7-367 (665)
29 1g7s_A Translation initiation 100.0 1.4E-33 4.9E-38 293.9 19.7 258 65-355 5-329 (594)
30 1zo1_I IF2, translation initia 100.0 1.1E-34 3.7E-39 295.2 8.9 248 65-354 4-258 (501)
31 3izy_P Translation initiation 100.0 8.6E-36 2.9E-40 305.8 0.4 254 65-356 4-261 (537)
32 1n0u_A EF-2, elongation factor 100.0 5.3E-31 1.8E-35 285.8 25.4 288 62-354 16-473 (842)
33 1wf3_A GTP-binding protein; GT 99.9 9.1E-21 3.1E-25 182.3 17.0 158 64-257 6-173 (301)
34 4dhe_A Probable GTP-binding pr 99.9 5.7E-21 1.9E-25 175.6 14.2 169 64-259 28-213 (223)
35 3iev_A GTP-binding protein ERA 99.8 1.1E-20 3.9E-25 182.5 16.3 163 62-257 7-182 (308)
36 2dyk_A GTP-binding protein; GT 99.8 1.9E-20 6.4E-25 162.5 13.9 153 66-256 2-161 (161)
37 2lkc_A Translation initiation 99.8 6.6E-21 2.3E-25 168.4 9.5 161 63-256 6-170 (178)
38 2hjg_A GTP-binding protein ENG 99.8 1.9E-20 6.6E-25 189.7 13.8 150 64-233 174-335 (436)
39 2efe_B Small GTP-binding prote 99.8 2.5E-20 8.7E-25 165.1 11.2 163 62-257 9-175 (181)
40 4gzl_A RAS-related C3 botulinu 99.8 6.3E-20 2.1E-24 166.5 12.5 169 54-254 19-202 (204)
41 3pqc_A Probable GTP-binding pr 99.8 3E-19 1E-23 160.0 16.8 159 64-256 22-193 (195)
42 1svi_A GTP-binding protein YSX 99.8 3.3E-19 1.1E-23 160.0 16.2 161 63-256 21-194 (195)
43 1zd9_A ADP-ribosylation factor 99.8 1.8E-19 6.1E-24 161.2 14.0 161 62-256 19-184 (188)
44 4dcu_A GTP-binding protein ENG 99.8 4.9E-20 1.7E-24 187.7 11.4 161 63-253 193-365 (456)
45 1ek0_A Protein (GTP-binding pr 99.8 3.9E-20 1.3E-24 161.7 8.9 163 64-256 2-168 (170)
46 2fg5_A RAB-22B, RAS-related pr 99.8 7.2E-20 2.5E-24 164.3 10.8 162 63-257 21-186 (192)
47 3t1o_A Gliding protein MGLA; G 99.8 6.4E-20 2.2E-24 164.6 10.3 167 61-255 10-190 (198)
48 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.7E-19 5.7E-24 160.3 12.7 165 64-258 4-181 (186)
49 1ega_A Protein (GTP-binding pr 99.8 1.1E-19 3.8E-24 174.9 12.3 159 65-257 8-175 (301)
50 1r2q_A RAS-related protein RAB 99.8 1.1E-19 3.6E-24 159.0 11.0 161 63-256 4-168 (170)
51 2hxs_A RAB-26, RAS-related pro 99.8 1.3E-19 4.4E-24 160.0 11.3 161 63-257 4-173 (178)
52 1wms_A RAB-9, RAB9, RAS-relate 99.8 5.6E-19 1.9E-23 155.8 15.3 161 61-256 3-173 (177)
53 1zj6_A ADP-ribosylation factor 99.8 2.1E-19 7E-24 160.5 11.7 162 63-259 14-180 (187)
54 3dz8_A RAS-related protein RAB 99.8 1.6E-19 5.4E-24 161.9 10.7 160 63-255 21-184 (191)
55 1z0j_A RAB-22, RAS-related pro 99.8 1.7E-19 5.8E-24 157.8 10.6 161 63-256 4-168 (170)
56 3qq5_A Small GTP-binding prote 99.8 1.9E-20 6.6E-25 187.3 5.0 159 62-258 31-197 (423)
57 3i8s_A Ferrous iron transport 99.8 6.3E-20 2.2E-24 174.3 8.3 155 65-257 3-169 (274)
58 2g6b_A RAS-related protein RAB 99.8 3.8E-19 1.3E-23 157.3 12.6 160 63-256 8-173 (180)
59 4bas_A ADP-ribosylation factor 99.8 2.9E-19 1E-23 160.8 12.0 161 62-256 14-188 (199)
60 2h57_A ADP-ribosylation factor 99.8 1.8E-19 6.3E-24 161.3 10.4 161 63-256 19-186 (190)
61 3tkl_A RAS-related protein RAB 99.8 4.5E-19 1.5E-23 159.2 12.8 159 63-256 14-178 (196)
62 1z0f_A RAB14, member RAS oncog 99.8 2.5E-19 8.6E-24 158.1 10.9 160 63-255 13-176 (179)
63 1kao_A RAP2A; GTP-binding prot 99.8 2.2E-19 7.5E-24 156.3 10.4 158 64-255 2-164 (167)
64 1upt_A ARL1, ADP-ribosylation 99.8 3.5E-19 1.2E-23 156.1 11.5 158 64-256 6-168 (171)
65 2il1_A RAB12; G-protein, GDP, 99.8 1.4E-19 4.8E-24 162.5 9.1 160 62-255 23-188 (192)
66 3bc1_A RAS-related protein RAB 99.8 5.5E-19 1.9E-23 158.0 12.7 159 62-255 8-183 (195)
67 1r8s_A ADP-ribosylation factor 99.8 1.1E-18 3.8E-23 151.8 14.2 156 66-256 1-161 (164)
68 2h17_A ADP-ribosylation factor 99.8 4E-19 1.4E-23 157.8 10.9 157 63-254 19-180 (181)
69 1ksh_A ARF-like protein 2; sma 99.8 4.5E-19 1.6E-23 157.9 11.3 159 63-256 16-179 (186)
70 2y8e_A RAB-protein 6, GH09086P 99.8 2.8E-19 9.5E-24 157.8 9.6 159 63-256 12-176 (179)
71 2ew1_A RAS-related protein RAB 99.8 3.3E-19 1.1E-23 161.5 10.3 160 62-256 23-188 (201)
72 2oil_A CATX-8, RAS-related pro 99.8 2.7E-19 9.1E-24 160.5 9.5 161 62-255 22-186 (193)
73 3llu_A RAS-related GTP-binding 99.8 1.4E-18 4.8E-23 156.4 14.1 163 62-254 17-194 (196)
74 1zbd_A Rabphilin-3A; G protein 99.8 4.2E-19 1.4E-23 160.5 10.6 159 64-255 7-169 (203)
75 3iby_A Ferrous iron transport 99.8 9.8E-20 3.3E-24 171.1 6.4 151 66-254 2-164 (256)
76 1c1y_A RAS-related protein RAP 99.8 5.2E-19 1.8E-23 154.2 10.6 158 64-255 2-165 (167)
77 2gf9_A RAS-related protein RAB 99.8 1.8E-19 6.3E-24 161.1 7.9 160 63-255 20-183 (189)
78 2bme_A RAB4A, RAS-related prot 99.8 8.7E-19 3E-23 155.9 12.1 159 63-256 8-172 (186)
79 2nzj_A GTP-binding protein REM 99.8 5.9E-19 2E-23 155.2 10.8 158 64-255 3-167 (175)
80 3clv_A RAB5 protein, putative; 99.8 8.7E-19 3E-23 157.9 12.2 108 128-255 93-202 (208)
81 2qu8_A Putative nucleolar GTP- 99.8 2.1E-18 7.3E-23 159.2 15.0 164 63-256 27-204 (228)
82 1z2a_A RAS-related protein RAB 99.8 2.2E-19 7.6E-24 156.7 8.0 159 64-255 4-165 (168)
83 2p5s_A RAS and EF-hand domain 99.8 1.7E-19 5.9E-24 162.8 7.5 165 62-256 25-196 (199)
84 2a5j_A RAS-related protein RAB 99.8 2.2E-19 7.7E-24 160.9 8.1 161 62-255 18-182 (191)
85 2atx_A Small GTP binding prote 99.8 7.2E-19 2.5E-23 157.8 11.4 163 63-255 16-191 (194)
86 2fu5_C RAS-related protein RAB 99.8 3.1E-19 1E-23 158.5 8.7 158 63-255 6-169 (183)
87 1u8z_A RAS-related protein RAL 99.8 9E-19 3.1E-23 152.6 11.5 158 64-255 3-165 (168)
88 1ky3_A GTP-binding protein YPT 99.8 5.5E-19 1.9E-23 156.3 10.3 161 62-255 5-176 (182)
89 3kkq_A RAS-related protein M-R 99.8 4.2E-19 1.4E-23 157.7 9.3 158 62-255 15-180 (183)
90 1z08_A RAS-related protein RAB 99.8 4.1E-19 1.4E-23 155.5 9.1 160 63-255 4-167 (170)
91 2hup_A RAS-related protein RAB 99.8 1.4E-18 5E-23 157.1 13.0 160 63-256 27-192 (201)
92 1mky_A Probable GTP-binding pr 99.8 1.7E-18 6E-23 175.4 15.0 154 66-256 2-165 (439)
93 4dsu_A GTPase KRAS, isoform 2B 99.8 9.4E-19 3.2E-23 155.9 11.5 156 64-256 3-165 (189)
94 2wji_A Ferrous iron transport 99.8 5.3E-19 1.8E-23 154.7 9.6 153 65-255 3-163 (165)
95 2erx_A GTP-binding protein DI- 99.8 1E-18 3.5E-23 153.0 11.5 159 65-257 3-167 (172)
96 3reg_A RHO-like small GTPase; 99.8 4.1E-19 1.4E-23 159.5 8.9 165 60-256 18-187 (194)
97 1vg8_A RAS-related protein RAB 99.8 5.3E-19 1.8E-23 160.2 9.7 160 62-256 5-174 (207)
98 3tw8_B RAS-related protein RAB 99.8 5E-19 1.7E-23 156.4 9.2 159 63-256 7-170 (181)
99 2j1l_A RHO-related GTP-binding 99.8 1.9E-18 6.6E-23 157.9 13.3 162 63-255 32-207 (214)
100 2hjg_A GTP-binding protein ENG 99.8 5.6E-19 1.9E-23 178.9 10.6 154 66-257 4-165 (436)
101 1x3s_A RAS-related protein RAB 99.8 7.5E-19 2.6E-23 157.5 10.1 160 63-256 13-177 (195)
102 2gco_A H9, RHO-related GTP-bin 99.8 1.5E-18 5.2E-23 156.9 12.2 161 63-254 23-197 (201)
103 3a1s_A Iron(II) transport prot 99.8 7.5E-19 2.5E-23 165.3 10.4 155 64-256 4-166 (258)
104 2f7s_A C25KG, RAS-related prot 99.8 7.9E-19 2.7E-23 160.5 10.3 158 63-255 23-197 (217)
105 3bwd_D RAC-like GTP-binding pr 99.8 3.9E-19 1.3E-23 157.5 8.0 164 63-256 6-180 (182)
106 1fzq_A ADP-ribosylation factor 99.8 4.8E-18 1.7E-22 150.9 15.1 159 63-256 14-177 (181)
107 2gf0_A GTP-binding protein DI- 99.8 1.8E-18 6.2E-23 155.6 12.2 163 60-257 3-171 (199)
108 3q72_A GTP-binding protein RAD 99.8 1.1E-18 3.6E-23 152.3 10.1 156 65-255 2-162 (166)
109 2a9k_A RAS-related protein RAL 99.8 1.7E-18 5.7E-23 153.9 11.4 157 63-255 16-179 (187)
110 3t5g_A GTP-binding protein RHE 99.8 4.1E-19 1.4E-23 157.4 7.4 160 63-256 4-168 (181)
111 1g16_A RAS-related protein SEC 99.8 4.8E-19 1.7E-23 154.9 7.8 156 65-256 3-164 (170)
112 2fv8_A H6, RHO-related GTP-bin 99.8 2.3E-18 7.8E-23 156.5 12.3 164 63-256 23-199 (207)
113 2xtp_A GTPase IMAP family memb 99.8 2.7E-18 9.1E-23 161.8 13.1 167 63-256 20-207 (260)
114 1m2o_B GTP-binding protein SAR 99.8 2.2E-18 7.5E-23 154.5 11.8 157 63-254 21-189 (190)
115 2b6h_A ADP-ribosylation factor 99.8 2.3E-18 7.9E-23 154.6 11.8 159 63-256 27-190 (192)
116 3k53_A Ferrous iron transport 99.8 4.7E-19 1.6E-23 168.1 7.5 155 64-256 2-165 (271)
117 2j0v_A RAC-like GTP-binding pr 99.8 8.2E-19 2.8E-23 159.8 8.4 166 63-258 7-181 (212)
118 1z06_A RAS-related protein RAB 99.8 1.7E-18 5.8E-23 154.8 10.4 164 63-256 18-187 (189)
119 3con_A GTPase NRAS; structural 99.8 4E-18 1.4E-22 152.3 12.8 156 63-255 19-181 (190)
120 2ce2_X GTPase HRAS; signaling 99.8 3E-18 1E-22 148.8 11.6 156 65-255 3-163 (166)
121 2o52_A RAS-related protein RAB 99.8 9.2E-19 3.1E-23 158.2 8.4 158 63-255 23-186 (200)
122 2bov_A RAla, RAS-related prote 99.8 2.9E-18 1E-22 155.1 11.7 157 63-255 12-175 (206)
123 2bcg_Y Protein YP2, GTP-bindin 99.8 7.9E-19 2.7E-23 159.2 7.8 158 63-255 6-169 (206)
124 2fn4_A P23, RAS-related protei 99.8 5.8E-19 2E-23 156.0 6.7 158 63-256 7-171 (181)
125 3cph_A RAS-related protein SEC 99.8 1.4E-18 4.9E-23 158.1 9.4 156 64-255 19-180 (213)
126 1m7b_A RND3/RHOE small GTP-bin 99.8 4.4E-18 1.5E-22 151.5 12.3 162 63-254 5-180 (184)
127 2fh5_B SR-beta, signal recogni 99.8 6.3E-18 2.2E-22 154.2 13.5 169 62-254 4-213 (214)
128 1moz_A ARL1, ADP-ribosylation 99.8 1.1E-18 3.8E-23 154.8 8.2 158 63-255 16-178 (183)
129 3gee_A MNME, tRNA modification 99.8 2.6E-18 9.1E-23 174.7 11.6 156 64-256 232-397 (476)
130 3oes_A GTPase rhebl1; small GT 99.8 7.3E-19 2.5E-23 158.9 6.7 160 63-256 22-186 (201)
131 2gj8_A MNME, tRNA modification 99.7 2.9E-18 9.8E-23 151.2 10.2 152 64-256 3-165 (172)
132 4djt_A GTP-binding nuclear pro 99.7 5.1E-19 1.8E-23 161.9 4.9 163 61-256 7-174 (218)
133 2wjg_A FEOB, ferrous iron tran 99.7 2.1E-18 7.1E-23 153.8 8.6 156 64-257 6-169 (188)
134 1f6b_A SAR1; gtpases, N-termin 99.7 3.2E-18 1.1E-22 154.5 9.7 158 63-255 23-197 (198)
135 1mky_A Probable GTP-binding pr 99.7 8.8E-18 3E-22 170.2 13.9 162 64-255 179-353 (439)
136 2yc2_C IFT27, small RAB-relate 99.7 1.8E-18 6E-23 156.7 7.8 160 63-255 18-190 (208)
137 3q85_A GTP-binding protein REM 99.7 3.3E-18 1.1E-22 149.6 9.3 158 65-255 2-165 (169)
138 3r7w_A Gtpase1, GTP-binding pr 99.7 4.3E-17 1.5E-21 157.3 18.0 149 65-231 3-166 (307)
139 3t5d_A Septin-7; GTP-binding p 99.7 1.7E-17 6E-22 157.5 15.0 167 64-256 7-203 (274)
140 3q3j_B RHO-related GTP-binding 99.7 5.8E-18 2E-22 154.7 11.1 163 63-256 25-202 (214)
141 2q3h_A RAS homolog gene family 99.7 1.1E-17 3.8E-22 150.9 12.7 162 63-256 18-194 (201)
142 4dcu_A GTP-binding protein ENG 99.7 3.9E-18 1.3E-22 173.6 10.8 154 65-256 23-184 (456)
143 1gwn_A RHO-related GTP-binding 99.7 9.8E-18 3.3E-22 152.2 12.1 162 62-254 25-201 (205)
144 3ihw_A Centg3; RAS, centaurin, 99.7 5E-18 1.7E-22 151.4 9.8 157 62-255 17-178 (184)
145 2x77_A ADP-ribosylation factor 99.7 3.1E-18 1E-22 153.0 8.4 159 63-256 20-183 (189)
146 3cpj_B GTP-binding protein YPT 99.7 3.1E-18 1.1E-22 157.5 8.3 160 63-257 11-176 (223)
147 3gj0_A GTP-binding nuclear pro 99.7 8.9E-19 3.1E-23 160.8 4.5 160 62-256 12-174 (221)
148 4dkx_A RAS-related protein RAB 99.7 5E-18 1.7E-22 155.2 9.4 158 64-256 12-175 (216)
149 3th5_A RAS-related C3 botulinu 99.6 2E-19 6.7E-24 163.0 0.0 163 62-254 27-202 (204)
150 3b1v_A Ferrous iron uptake tra 99.7 2.1E-18 7.2E-23 163.3 7.0 153 65-256 3-163 (272)
151 3lxw_A GTPase IMAP family memb 99.7 1.8E-17 6.2E-22 154.9 12.8 167 63-256 19-207 (247)
152 3c5c_A RAS-like protein 12; GD 99.7 5.9E-18 2E-22 151.2 9.1 159 62-255 18-184 (187)
153 3o47_A ADP-ribosylation factor 99.7 4.1E-18 1.4E-22 166.0 8.3 159 63-256 163-326 (329)
154 2cxx_A Probable GTP-binding pr 99.7 5.5E-17 1.9E-21 144.6 14.8 154 66-256 2-183 (190)
155 3cbq_A GTP-binding protein REM 99.7 1.4E-17 4.7E-22 149.9 10.6 160 62-256 20-187 (195)
156 2atv_A RERG, RAS-like estrogen 99.7 1.7E-17 5.8E-22 149.2 10.1 158 63-255 26-189 (196)
157 3l0i_B RAS-related protein RAB 99.7 3.8E-19 1.3E-23 160.6 -1.5 159 63-256 31-195 (199)
158 1xzp_A Probable tRNA modificat 99.7 2E-17 6.7E-22 168.4 10.6 153 65-256 243-404 (482)
159 2zej_A Dardarin, leucine-rich 99.7 4.2E-17 1.5E-21 145.2 10.6 166 65-256 2-177 (184)
160 3lxx_A GTPase IMAP family memb 99.7 1.5E-16 5E-21 147.9 13.8 169 62-256 26-213 (239)
161 2iwr_A Centaurin gamma 1; ANK 99.7 2.7E-17 9.3E-22 145.2 8.2 154 63-255 5-167 (178)
162 1lnz_A SPO0B-associated GTP-bi 99.7 6.7E-17 2.3E-21 157.5 11.5 155 66-257 159-330 (342)
163 3lvq_E ARF-GAP with SH3 domain 99.7 7.6E-17 2.6E-21 166.1 12.5 159 63-256 320-483 (497)
164 3geh_A MNME, tRNA modification 99.7 3.7E-17 1.3E-21 165.6 9.5 154 64-257 223-384 (462)
165 2wkq_A NPH1-1, RAS-related C3 99.7 1.1E-16 3.8E-21 155.8 11.9 161 64-256 154-329 (332)
166 2g3y_A GTP-binding protein GEM 99.6 6.4E-16 2.2E-20 140.7 11.0 161 63-255 35-201 (211)
167 2qtf_A Protein HFLX, GTP-bindi 99.6 1.5E-15 5.1E-20 149.5 14.1 159 66-256 180-353 (364)
168 1nrj_B SR-beta, signal recogni 99.6 7.1E-16 2.4E-20 140.9 9.2 144 62-231 9-168 (218)
169 2e87_A Hypothetical protein PH 99.6 4.6E-15 1.6E-19 146.2 15.3 156 63-255 165-334 (357)
170 1pui_A ENGB, probable GTP-bind 99.6 5.2E-15 1.8E-19 134.2 14.0 161 64-256 25-198 (210)
171 2j69_A Bacterial dynamin-like 99.6 3.3E-15 1.1E-19 159.0 13.0 127 128-255 174-323 (695)
172 3r7w_B Gtpase2, GTP-binding pr 99.6 2.8E-15 9.7E-20 143.7 11.1 160 67-255 1-172 (331)
173 3dpu_A RAB family protein; roc 99.6 4.1E-16 1.4E-20 161.9 5.4 159 63-256 39-207 (535)
174 1jwy_B Dynamin A GTPase domain 99.6 2.4E-15 8.2E-20 145.5 9.9 119 126-257 129-262 (315)
175 2aka_B Dynamin-1; fusion prote 99.6 3.3E-15 1.1E-19 143.4 10.8 109 127-253 124-249 (299)
176 2cjw_A GTP-binding protein GEM 99.6 3.8E-15 1.3E-19 133.6 9.7 160 64-255 5-170 (192)
177 3p32_A Probable GTPase RV1496/ 99.6 1.1E-14 3.6E-19 143.4 13.2 176 62-256 76-283 (355)
178 3def_A T7I23.11 protein; chlor 99.6 4.9E-15 1.7E-19 139.6 10.4 117 63-195 34-165 (262)
179 2f9l_A RAB11B, member RAS onco 99.6 4.4E-15 1.5E-19 133.8 9.3 157 64-255 4-166 (199)
180 2p67_A LAO/AO transport system 99.6 1.1E-14 3.6E-19 142.6 12.4 174 63-255 54-259 (341)
181 2qag_A Septin-2, protein NEDD5 99.6 7.5E-15 2.6E-19 144.6 10.6 174 63-258 35-238 (361)
182 1h65_A Chloroplast outer envel 99.6 1.7E-14 5.7E-19 136.6 12.6 118 63-196 37-169 (270)
183 1wxq_A GTP-binding protein; st 99.5 1.2E-14 4E-19 144.7 8.2 83 66-164 1-114 (397)
184 3c5h_A Glucocorticoid receptor 99.5 2E-14 7E-19 134.8 9.0 85 151-255 162-253 (255)
185 1oix_A RAS-related protein RAB 99.5 2.4E-14 8.1E-19 128.2 8.0 157 63-254 27-189 (191)
186 2ged_A SR-beta, signal recogni 99.5 3.2E-14 1.1E-18 127.1 7.4 112 63-195 46-170 (193)
187 2www_A Methylmalonic aciduria 99.5 1.7E-13 5.7E-18 134.3 12.1 171 64-255 73-277 (349)
188 2wsm_A Hydrogenase expression/ 99.4 7.2E-14 2.5E-18 127.8 6.4 168 63-256 28-213 (221)
189 1yrb_A ATP(GTP)binding protein 99.4 3.2E-13 1.1E-17 126.9 10.9 175 65-256 14-256 (262)
190 2qpt_A EH domain-containing pr 99.4 4.3E-13 1.5E-17 138.9 11.7 71 128-199 154-236 (550)
191 2x2e_A Dynamin-1; nitration, h 99.4 1.7E-13 6E-18 134.6 7.8 159 65-231 31-242 (353)
192 3zvr_A Dynamin-1; hydrolase, D 99.4 1.4E-13 4.8E-18 145.6 4.6 161 64-232 50-263 (772)
193 1udx_A The GTP-binding protein 99.4 1.5E-12 5.2E-17 129.8 11.3 154 66-256 158-324 (416)
194 3t34_A Dynamin-related protein 99.4 5.9E-13 2E-17 131.2 8.2 96 127-231 135-245 (360)
195 2qm8_A GTPase/ATPase; G protei 99.3 1.1E-11 3.7E-16 120.8 11.3 174 64-255 54-259 (337)
196 2qag_C Septin-7; cell cycle, c 99.3 3E-11 1E-15 120.4 13.9 165 63-256 29-226 (418)
197 1cip_A Protein (guanine nucleo 99.2 1.9E-11 6.4E-16 119.5 8.6 131 114-255 179-342 (353)
198 1jal_A YCHF protein; nucleotid 99.2 4.5E-11 1.5E-15 116.6 11.1 82 66-163 3-108 (363)
199 2qnr_A Septin-2, protein NEDD5 99.2 6.1E-11 2.1E-15 113.7 11.1 151 64-231 17-199 (301)
200 2j37_W Signal recognition part 99.2 5E-11 1.7E-15 121.3 9.2 171 64-254 100-310 (504)
201 4a9a_A Ribosome-interacting GT 99.1 4.6E-11 1.6E-15 117.1 7.7 113 64-194 71-195 (376)
202 1xe1_A Hypothetical protein PF 99.1 6.6E-10 2.2E-14 88.1 12.7 83 262-352 31-113 (116)
203 2dby_A GTP-binding protein; GD 99.1 3E-10 1E-14 111.4 11.8 84 66-163 2-111 (368)
204 3ohm_A Guanine nucleotide-bind 99.1 1.3E-09 4.4E-14 105.0 13.7 131 114-255 153-316 (327)
205 2hf9_A Probable hydrogenase ni 99.0 1E-09 3.6E-14 100.2 10.4 168 63-255 36-222 (226)
206 4fid_A G protein alpha subunit 99.0 2.4E-09 8.1E-14 103.5 13.1 81 114-195 147-242 (340)
207 3sop_A Neuronal-specific septi 98.9 6.9E-09 2.4E-13 97.6 12.9 143 65-216 2-174 (270)
208 2qag_B Septin-6, protein NEDD5 98.9 6E-09 2E-13 103.5 12.7 144 65-228 42-217 (427)
209 1tq4_A IIGP1, interferon-induc 98.9 1.4E-08 4.9E-13 100.8 14.7 166 65-259 69-255 (413)
210 2xtz_A Guanine nucleotide-bind 98.9 2.9E-09 1E-13 103.9 9.3 67 127-194 182-263 (354)
211 2ohf_A Protein OLA1, GTP-bindi 98.9 3.5E-09 1.2E-13 104.3 8.6 84 64-163 21-128 (396)
212 1zcb_A G alpha I/13; GTP-bindi 98.8 6.1E-09 2.1E-13 102.0 7.0 130 115-255 188-351 (362)
213 2v3c_C SRP54, signal recogniti 98.8 7.5E-09 2.6E-13 103.7 7.7 128 65-195 99-252 (432)
214 3h2y_A GTPase family protein; 98.8 3.8E-10 1.3E-14 111.2 -1.8 121 65-198 160-290 (368)
215 3ec1_A YQEH GTPase; atnos1, at 98.7 3.6E-10 1.2E-14 111.4 -3.2 118 65-196 162-289 (369)
216 1u0l_A Probable GTPase ENGC; p 98.6 2.3E-08 7.9E-13 95.7 6.1 103 129-252 64-168 (301)
217 3dm5_A SRP54, signal recogniti 98.6 3.4E-07 1.2E-11 91.3 13.6 149 65-228 100-274 (443)
218 1j8m_F SRP54, signal recogniti 98.5 1.2E-06 4E-11 83.5 14.6 128 65-195 98-253 (297)
219 1azs_C GS-alpha; complex (lyas 98.5 2.6E-07 8.8E-12 91.3 9.0 79 115-194 204-297 (402)
220 3kl4_A SRP54, signal recogniti 98.5 1.1E-06 3.7E-11 87.7 13.2 128 65-196 97-253 (433)
221 1puj_A YLQF, conserved hypothe 98.5 4.6E-07 1.6E-11 85.6 9.4 101 132-255 3-104 (282)
222 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 2.7E-07 9.4E-12 90.9 7.5 84 64-163 19-127 (392)
223 2xxa_A Signal recognition part 98.4 1E-06 3.6E-11 88.2 10.1 128 64-195 99-254 (433)
224 3ec1_A YQEH GTPase; atnos1, at 98.3 7.3E-07 2.5E-11 87.6 7.2 110 130-255 51-160 (369)
225 2yv5_A YJEQ protein; hydrolase 98.2 3.7E-06 1.3E-10 80.3 9.8 87 147-251 75-163 (302)
226 3h2y_A GTPase family protein; 98.2 1.3E-06 4.5E-11 85.7 6.5 102 137-255 55-158 (368)
227 1d1n_A Initiation factor 2; be 98.1 2.1E-06 7E-11 66.2 4.6 82 267-351 8-89 (99)
228 4dzz_A Plasmid partitioning pr 98.1 2.1E-05 7.1E-10 70.1 11.4 124 67-194 3-143 (206)
229 1f5n_A Interferon-induced guan 98.1 8.5E-07 2.9E-11 91.7 2.2 101 62-177 35-146 (592)
230 3cnl_A YLQF, putative uncharac 98.1 2.3E-06 8E-11 79.9 5.0 94 135-254 4-98 (262)
231 1puj_A YLQF, conserved hypothe 98.1 2.6E-06 8.8E-11 80.5 5.2 57 64-138 119-175 (282)
232 2crv_A IF-2MT, translation ini 98.1 1.1E-05 3.7E-10 64.3 7.8 83 267-352 12-98 (120)
233 2yhs_A FTSY, cell division pro 98.0 1E-05 3.4E-10 81.5 8.6 125 65-195 293-452 (503)
234 1zu4_A FTSY; GTPase, signal re 98.0 9.9E-06 3.4E-10 77.8 7.8 126 65-195 105-268 (320)
235 3e70_C DPA, signal recognition 98.0 1.4E-05 4.8E-10 77.0 8.8 128 64-195 128-282 (328)
236 3l82_B F-box only protein 4; T 97.9 2.8E-05 9.5E-10 69.1 8.1 103 137-256 111-222 (227)
237 1vma_A Cell division protein F 97.9 2.4E-05 8.2E-10 74.6 8.0 127 65-195 104-263 (306)
238 2ffh_A Protein (FFH); SRP54, s 97.8 4.4E-05 1.5E-09 75.9 9.4 127 65-195 98-251 (425)
239 1rj9_A FTSY, signal recognitio 97.8 5.2E-05 1.8E-09 72.3 9.0 127 65-195 102-261 (304)
240 3cnl_A YLQF, putative uncharac 97.8 9E-06 3.1E-10 75.9 3.5 57 66-140 100-156 (262)
241 3szr_A Interferon-induced GTP- 97.8 5.3E-05 1.8E-09 79.3 9.6 68 127-195 146-228 (608)
242 2px0_A Flagellar biosynthesis 97.8 1.8E-05 6.3E-10 75.1 5.3 128 65-195 105-253 (296)
243 3kjh_A CO dehydrogenase/acetyl 97.8 3E-05 1E-09 71.3 6.5 65 126-192 130-194 (254)
244 1zo1_I IF2, translation initia 97.8 0.0001 3.6E-09 74.8 10.8 105 244-352 388-492 (501)
245 1t9h_A YLOQ, probable GTPase E 97.7 4.2E-05 1.5E-09 72.8 5.9 77 148-231 83-161 (307)
246 2ph1_A Nucleotide-binding prot 97.6 0.00055 1.9E-08 63.6 12.2 68 126-193 127-194 (262)
247 1ls1_A Signal recognition part 97.5 0.00015 5.1E-09 68.8 6.8 127 65-195 98-251 (295)
248 3izy_P Translation initiation 97.5 0.00085 2.9E-08 68.7 12.8 184 133-351 346-534 (537)
249 3cwq_A Para family chromosome 97.5 0.00056 1.9E-08 61.3 10.2 124 67-195 2-134 (209)
250 3b9q_A Chloroplast SRP recepto 97.5 0.00035 1.2E-08 66.4 9.0 128 65-195 100-260 (302)
251 3l2o_B F-box only protein 4; s 97.4 0.00022 7.5E-09 66.4 7.2 104 136-256 195-307 (312)
252 1hyq_A MIND, cell division inh 97.4 0.00045 1.6E-08 64.0 9.2 67 127-195 110-176 (263)
253 1g3q_A MIND ATPase, cell divis 97.3 0.00071 2.4E-08 61.5 8.9 67 127-195 111-177 (237)
254 2og2_A Putative signal recogni 97.3 0.00054 1.8E-08 66.6 8.2 128 65-195 157-317 (359)
255 3cio_A ETK, tyrosine-protein k 97.3 0.00047 1.6E-08 65.5 7.6 66 128-194 214-279 (299)
256 3k9g_A PF-32 protein; ssgcid, 97.3 0.001 3.5E-08 61.7 9.7 65 127-194 144-210 (267)
257 3bfv_A CAPA1, CAPB2, membrane 97.2 0.0017 6E-08 60.6 10.9 66 128-194 192-257 (271)
258 3q5d_A Atlastin-1; G protein, 97.2 0.00037 1.3E-08 69.6 6.5 28 62-89 64-91 (447)
259 2oze_A ORF delta'; para, walke 97.2 0.002 6.9E-08 60.8 11.4 67 127-195 154-226 (298)
260 3la6_A Tyrosine-protein kinase 97.2 0.00059 2E-08 64.3 7.0 67 128-195 202-268 (286)
261 3end_A Light-independent proto 97.2 0.00058 2E-08 64.9 6.8 66 127-193 156-225 (307)
262 3q9l_A Septum site-determining 97.1 0.0013 4.4E-08 60.6 8.7 65 127-193 113-185 (260)
263 2rcn_A Probable GTPase ENGC; Y 97.1 0.0021 7.3E-08 62.2 10.3 83 149-250 128-212 (358)
264 1g7s_A Translation initiation 97.1 0.0036 1.2E-07 65.0 12.5 86 263-353 461-549 (594)
265 1wcv_1 SOJ, segregation protei 96.9 0.0065 2.2E-07 56.0 11.5 68 126-195 110-183 (257)
266 3ea0_A ATPase, para family; al 96.8 0.0011 3.6E-08 60.6 5.3 67 127-195 118-186 (245)
267 1cp2_A CP2, nitrogenase iron p 96.8 0.0036 1.2E-07 58.0 8.9 66 127-194 115-187 (269)
268 2afh_E Nitrogenase iron protei 96.8 0.0015 5.1E-08 61.5 6.2 65 127-193 118-189 (289)
269 3ug7_A Arsenical pump-driving 96.7 0.044 1.5E-06 52.9 15.6 43 152-194 237-279 (349)
270 2xj4_A MIPZ; replication, cell 96.4 0.01 3.5E-07 55.7 9.2 94 67-162 6-136 (286)
271 3zq6_A Putative arsenical pump 96.3 0.12 4E-06 49.3 16.3 42 153-194 223-264 (324)
272 1ihu_A Arsenical pump-driving 96.1 0.022 7.5E-07 59.2 10.3 42 153-194 199-240 (589)
273 3qxc_A Dethiobiotin synthetase 96.0 0.18 6.1E-06 45.9 14.6 65 127-194 131-202 (242)
274 1t9h_A YLOQ, probable GTPase E 96.0 0.0019 6.3E-08 61.4 1.3 23 66-88 174-196 (307)
275 2woo_A ATPase GET3; tail-ancho 95.9 0.1 3.6E-06 49.8 13.7 41 153-193 222-262 (329)
276 1ye8_A Protein THEP1, hypothet 95.8 0.0052 1.8E-07 53.4 3.7 24 66-89 1-24 (178)
277 2woj_A ATPase GET3; tail-ancho 95.7 0.12 4.1E-06 49.9 13.1 42 151-192 234-275 (354)
278 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.23 8E-06 45.5 14.3 29 66-94 5-33 (260)
279 1bif_A 6-phosphofructo-2-kinas 95.6 0.0049 1.7E-07 62.3 2.8 103 65-182 39-151 (469)
280 1lvg_A Guanylate kinase, GMP k 95.6 0.0061 2.1E-07 53.9 2.9 24 66-89 5-28 (198)
281 2yv5_A YJEQ protein; hydrolase 95.5 0.0089 3E-07 56.6 4.3 21 66-86 166-186 (302)
282 1byi_A Dethiobiotin synthase; 95.5 0.051 1.8E-06 48.5 8.9 68 127-194 108-180 (224)
283 1kgd_A CASK, peripheral plasma 95.4 0.0078 2.7E-07 52.2 3.2 24 66-89 6-29 (180)
284 4ido_A Atlastin-1; GTPase, GTP 95.4 0.03 1E-06 55.7 7.3 28 62-89 64-91 (457)
285 1htw_A HI0065; nucleotide-bind 95.3 0.0098 3.4E-07 50.6 3.2 30 65-94 33-62 (158)
286 3c8u_A Fructokinase; YP_612366 95.2 0.013 4.5E-07 52.0 4.0 29 64-92 21-49 (208)
287 1znw_A Guanylate kinase, GMP k 95.2 0.01 3.4E-07 52.8 3.2 24 66-89 21-44 (207)
288 3a00_A Guanylate kinase, GMP k 95.1 0.011 3.7E-07 51.6 3.2 24 67-90 3-26 (186)
289 3tr0_A Guanylate kinase, GMP k 95.1 0.011 3.7E-07 52.1 3.2 24 66-89 8-31 (205)
290 1zp6_A Hypothetical protein AT 95.1 0.012 4.1E-07 51.2 3.2 23 66-88 10-32 (191)
291 1ihu_A Arsenical pump-driving 95.0 0.18 6.2E-06 52.2 12.5 44 151-194 489-532 (589)
292 3iqw_A Tail-anchored protein t 95.0 0.3 1E-05 46.7 13.0 41 153-193 223-263 (334)
293 2b8t_A Thymidine kinase; deoxy 94.9 0.095 3.3E-06 47.1 8.9 34 65-98 12-45 (223)
294 1z6g_A Guanylate kinase; struc 94.9 0.013 4.5E-07 52.6 3.2 24 66-89 24-47 (218)
295 3hr8_A Protein RECA; alpha and 94.8 0.14 4.8E-06 49.4 10.3 28 66-93 62-89 (356)
296 3asz_A Uridine kinase; cytidin 94.8 0.017 5.8E-07 51.2 3.5 25 65-89 6-30 (211)
297 1s96_A Guanylate kinase, GMP k 94.8 0.015 5.2E-07 52.3 3.2 25 66-90 17-41 (219)
298 1np6_A Molybdopterin-guanine d 94.8 0.026 9E-07 48.7 4.5 28 66-93 7-34 (174)
299 2i3b_A HCR-ntpase, human cance 94.7 0.019 6.5E-07 50.3 3.6 27 67-93 3-29 (189)
300 1xjc_A MOBB protein homolog; s 94.7 0.029 1E-06 48.1 4.7 29 66-94 5-33 (169)
301 2zr9_A Protein RECA, recombina 94.7 0.12 4.1E-06 49.8 9.5 29 66-94 62-90 (349)
302 4eun_A Thermoresistant glucoki 94.6 0.021 7.3E-07 50.3 3.7 25 65-89 29-53 (200)
303 3io3_A DEHA2D07832P; chaperone 94.6 0.39 1.3E-05 46.2 12.8 42 153-194 232-273 (348)
304 3ney_A 55 kDa erythrocyte memb 94.5 0.02 7E-07 50.4 3.3 25 65-89 19-43 (197)
305 3b85_A Phosphate starvation-in 94.5 0.022 7.4E-07 50.8 3.5 30 66-95 23-52 (208)
306 4gp7_A Metallophosphoesterase; 94.5 0.018 6.1E-07 49.5 2.9 20 67-86 11-30 (171)
307 3tif_A Uncharacterized ABC tra 94.5 0.016 5.5E-07 52.7 2.7 22 67-88 33-54 (235)
308 2j41_A Guanylate kinase; GMP, 94.4 0.023 8E-07 49.9 3.5 24 66-89 7-30 (207)
309 2rcn_A Probable GTPase ENGC; Y 94.4 0.018 6.3E-07 55.7 3.0 23 66-88 216-238 (358)
310 3uie_A Adenylyl-sulfate kinase 94.4 0.033 1.1E-06 49.0 4.5 30 65-94 25-54 (200)
311 2f1r_A Molybdopterin-guanine d 94.4 0.017 5.8E-07 49.8 2.5 27 67-93 4-30 (171)
312 1xp8_A RECA protein, recombina 94.4 0.28 9.7E-06 47.5 11.3 29 66-94 75-103 (366)
313 2pcj_A ABC transporter, lipopr 94.4 0.017 5.9E-07 52.1 2.5 22 67-88 32-53 (224)
314 1knq_A Gluconate kinase; ALFA/ 94.4 0.028 9.7E-07 48.1 3.8 24 65-88 8-31 (175)
315 2onk_A Molybdate/tungstate ABC 94.4 0.022 7.4E-07 52.0 3.2 24 66-89 25-48 (240)
316 1kag_A SKI, shikimate kinase I 94.3 0.021 7.3E-07 48.7 3.0 23 66-88 5-27 (173)
317 3tau_A Guanylate kinase, GMP k 94.3 0.026 8.8E-07 50.1 3.5 25 65-89 8-32 (208)
318 2v9p_A Replication protein E1; 94.3 0.027 9.4E-07 53.2 3.8 25 65-89 126-150 (305)
319 2bdt_A BH3686; alpha-beta prot 94.2 0.027 9.3E-07 48.9 3.4 21 67-87 4-24 (189)
320 2cbz_A Multidrug resistance-as 94.1 0.022 7.4E-07 51.9 2.7 22 67-88 33-54 (237)
321 2pze_A Cystic fibrosis transme 94.1 0.022 7.5E-07 51.5 2.7 22 67-88 36-57 (229)
322 2yvu_A Probable adenylyl-sulfa 94.1 0.046 1.6E-06 47.3 4.6 30 64-93 12-41 (186)
323 2d2e_A SUFC protein; ABC-ATPas 94.1 0.027 9.2E-07 51.7 3.2 22 67-88 31-52 (250)
324 1g6h_A High-affinity branched- 94.1 0.023 7.7E-07 52.5 2.7 23 67-89 35-57 (257)
325 2eyu_A Twitching motility prot 94.1 0.029 1E-06 51.8 3.5 28 64-91 24-51 (261)
326 3kb2_A SPBC2 prophage-derived 94.1 0.033 1.1E-06 47.3 3.5 22 67-88 3-24 (173)
327 1mv5_A LMRA, multidrug resista 94.1 0.023 7.8E-07 52.0 2.7 24 66-89 29-52 (243)
328 1sgw_A Putative ABC transporte 94.0 0.022 7.4E-07 51.0 2.4 22 67-88 37-58 (214)
329 3fgn_A Dethiobiotin synthetase 94.0 0.81 2.8E-05 41.7 13.1 125 66-192 27-197 (251)
330 3of5_A Dethiobiotin synthetase 94.0 0.82 2.8E-05 41.0 13.0 67 126-194 109-182 (228)
331 2ff7_A Alpha-hemolysin translo 94.0 0.024 8.1E-07 52.0 2.7 23 67-89 37-59 (247)
332 3gfo_A Cobalt import ATP-bindi 94.0 0.023 7.9E-07 52.9 2.7 22 67-88 36-57 (275)
333 1u94_A RECA protein, recombina 94.0 0.2 6.8E-06 48.4 9.3 29 66-94 64-92 (356)
334 1b0u_A Histidine permease; ABC 94.0 0.024 8.1E-07 52.5 2.7 22 67-88 34-55 (262)
335 4g1u_C Hemin import ATP-bindin 94.0 0.023 7.7E-07 52.8 2.5 24 66-89 38-61 (266)
336 3io5_A Recombination and repai 94.0 0.63 2.2E-05 44.0 12.3 26 67-92 30-55 (333)
337 3lw7_A Adenylate kinase relate 94.0 0.03 1E-06 47.5 3.1 20 66-85 2-21 (179)
338 2if2_A Dephospho-COA kinase; a 93.9 0.031 1.1E-06 49.1 3.2 22 66-87 2-23 (204)
339 1ji0_A ABC transporter; ATP bi 93.9 0.025 8.7E-07 51.5 2.7 23 67-89 34-56 (240)
340 3aez_A Pantothenate kinase; tr 93.9 0.035 1.2E-06 52.8 3.7 29 63-91 88-116 (312)
341 2ghi_A Transport protein; mult 93.9 0.026 8.8E-07 52.2 2.7 24 67-90 48-71 (260)
342 2zu0_C Probable ATP-dependent 93.9 0.031 1E-06 51.9 3.2 22 67-88 48-69 (267)
343 2olj_A Amino acid ABC transpor 93.8 0.026 9E-07 52.2 2.7 22 67-88 52-73 (263)
344 2qi9_C Vitamin B12 import ATP- 93.8 0.027 9.3E-07 51.6 2.7 23 67-89 28-50 (249)
345 2qor_A Guanylate kinase; phosp 93.8 0.035 1.2E-06 49.0 3.3 24 66-89 13-36 (204)
346 1vpl_A ABC transporter, ATP-bi 93.8 0.027 9.4E-07 51.9 2.7 22 67-88 43-64 (256)
347 1nks_A Adenylate kinase; therm 93.8 0.047 1.6E-06 47.2 4.1 28 66-93 2-29 (194)
348 1cke_A CK, MSSA, protein (cyti 93.8 0.036 1.2E-06 49.6 3.4 23 66-88 6-28 (227)
349 3ec2_A DNA replication protein 93.8 0.042 1.4E-06 47.3 3.7 26 65-90 38-63 (180)
350 2jaq_A Deoxyguanosine kinase; 93.7 0.042 1.4E-06 48.0 3.7 22 67-88 2-23 (205)
351 1jjv_A Dephospho-COA kinase; P 93.7 0.038 1.3E-06 48.7 3.4 22 66-87 3-24 (206)
352 2qt1_A Nicotinamide riboside k 93.7 0.042 1.4E-06 48.5 3.6 25 64-88 20-44 (207)
353 2ihy_A ABC transporter, ATP-bi 93.7 0.029 1E-06 52.4 2.7 22 67-88 49-70 (279)
354 2jeo_A Uridine-cytidine kinase 93.6 0.041 1.4E-06 50.1 3.6 24 66-89 26-49 (245)
355 2ixe_A Antigen peptide transpo 93.6 0.03 1E-06 52.1 2.7 23 67-89 47-69 (271)
356 2bbw_A Adenylate kinase 4, AK4 93.6 0.037 1.2E-06 50.5 3.2 22 66-87 28-49 (246)
357 3t61_A Gluconokinase; PSI-biol 93.6 0.037 1.3E-06 48.7 3.2 24 66-89 19-42 (202)
358 2yz2_A Putative ABC transporte 93.6 0.03 1E-06 51.9 2.7 22 67-88 35-56 (266)
359 1ex7_A Guanylate kinase; subst 93.6 0.04 1.4E-06 48.1 3.3 23 67-89 3-25 (186)
360 1rz3_A Hypothetical protein rb 93.6 0.053 1.8E-06 47.8 4.1 27 65-91 22-48 (201)
361 2kjq_A DNAA-related protein; s 93.6 0.041 1.4E-06 46.1 3.2 27 65-91 36-62 (149)
362 3fb4_A Adenylate kinase; psych 93.5 0.046 1.6E-06 48.5 3.7 23 66-88 1-23 (216)
363 2nq2_C Hypothetical ABC transp 93.5 0.032 1.1E-06 51.3 2.6 22 67-88 33-54 (253)
364 1ly1_A Polynucleotide kinase; 93.5 0.047 1.6E-06 46.7 3.6 22 66-87 3-24 (181)
365 3vaa_A Shikimate kinase, SK; s 93.5 0.049 1.7E-06 47.8 3.7 24 66-89 26-49 (199)
366 1kht_A Adenylate kinase; phosp 93.5 0.055 1.9E-06 46.8 3.9 28 66-93 4-31 (192)
367 3lnc_A Guanylate kinase, GMP k 93.4 0.027 9.2E-07 50.8 1.9 24 66-89 28-52 (231)
368 2ehv_A Hypothetical protein PH 93.4 0.066 2.3E-06 48.4 4.5 23 66-88 31-53 (251)
369 1u0l_A Probable GTPase ENGC; p 93.4 0.033 1.1E-06 52.6 2.5 23 66-88 170-192 (301)
370 3nh6_A ATP-binding cassette SU 93.3 0.028 9.6E-07 53.2 2.0 24 66-89 81-104 (306)
371 3dl0_A Adenylate kinase; phosp 93.3 0.05 1.7E-06 48.3 3.5 23 66-88 1-23 (216)
372 3cm0_A Adenylate kinase; ATP-b 93.3 0.064 2.2E-06 46.2 4.1 23 66-88 5-27 (186)
373 2pbr_A DTMP kinase, thymidylat 93.3 0.064 2.2E-06 46.4 4.1 27 67-93 2-28 (195)
374 3tqc_A Pantothenate kinase; bi 93.3 0.055 1.9E-06 51.5 3.9 27 64-90 91-117 (321)
375 1odf_A YGR205W, hypothetical 3 93.2 0.056 1.9E-06 50.7 3.9 30 63-92 29-58 (290)
376 3jvv_A Twitching mobility prot 93.2 0.059 2E-06 52.1 4.1 27 66-92 124-150 (356)
377 1lw7_A Transcriptional regulat 93.2 0.046 1.6E-06 53.1 3.3 25 65-89 170-194 (365)
378 4a74_A DNA repair and recombin 93.2 0.045 1.5E-06 48.9 3.0 23 66-88 26-48 (231)
379 2pjz_A Hypothetical protein ST 93.2 0.039 1.3E-06 51.0 2.7 23 67-89 32-54 (263)
380 3gd7_A Fusion complex of cysti 93.2 0.038 1.3E-06 54.1 2.7 24 67-90 49-72 (390)
381 3trf_A Shikimate kinase, SK; a 93.1 0.06 2E-06 46.4 3.7 23 66-88 6-28 (185)
382 3tui_C Methionine import ATP-b 93.1 0.043 1.5E-06 53.1 2.9 23 67-89 56-78 (366)
383 3bos_A Putative DNA replicatio 93.1 0.17 5.7E-06 45.2 6.8 30 64-93 51-80 (242)
384 2z0h_A DTMP kinase, thymidylat 93.1 0.069 2.4E-06 46.4 4.1 28 67-94 2-29 (197)
385 2plr_A DTMP kinase, probable t 93.1 0.068 2.3E-06 47.0 4.1 28 66-93 5-32 (213)
386 3zvl_A Bifunctional polynucleo 93.1 0.19 6.4E-06 49.7 7.6 22 66-87 259-280 (416)
387 2rhm_A Putative kinase; P-loop 93.0 0.067 2.3E-06 46.3 3.8 23 66-88 6-28 (193)
388 2bbs_A Cystic fibrosis transme 93.0 0.041 1.4E-06 51.7 2.5 23 66-88 65-87 (290)
389 1nn5_A Similar to deoxythymidy 93.0 0.073 2.5E-06 47.0 4.1 29 65-93 9-37 (215)
390 2r8r_A Sensor protein; KDPD, P 93.0 0.2 6.9E-06 44.9 6.9 33 64-96 5-37 (228)
391 1gtv_A TMK, thymidylate kinase 93.0 0.031 1.1E-06 49.4 1.6 26 67-92 2-27 (214)
392 2pez_A Bifunctional 3'-phospho 92.9 0.086 2.9E-06 45.2 4.3 29 65-93 5-33 (179)
393 2ewv_A Twitching motility prot 92.9 0.073 2.5E-06 51.9 4.2 29 64-92 135-163 (372)
394 1sq5_A Pantothenate kinase; P- 92.8 0.065 2.2E-06 50.7 3.7 27 64-90 79-105 (308)
395 1aky_A Adenylate kinase; ATP:A 92.8 0.068 2.3E-06 47.6 3.7 24 65-88 4-27 (220)
396 1qhx_A CPT, protein (chloramph 92.8 0.068 2.3E-06 45.7 3.5 23 66-88 4-26 (178)
397 2gza_A Type IV secretion syste 92.8 0.045 1.5E-06 53.1 2.6 25 65-89 175-199 (361)
398 3fkq_A NTRC-like two-domain pr 92.8 0.041 1.4E-06 53.7 2.2 34 64-97 142-176 (373)
399 2wwf_A Thymidilate kinase, put 92.7 0.081 2.8E-06 46.6 4.0 27 65-91 10-36 (212)
400 3fvq_A Fe(3+) IONS import ATP- 92.7 0.051 1.8E-06 52.5 2.8 23 67-89 32-54 (359)
401 2pt5_A Shikimate kinase, SK; a 92.7 0.076 2.6E-06 44.9 3.7 22 67-88 2-23 (168)
402 1tev_A UMP-CMP kinase; ploop, 92.7 0.078 2.7E-06 45.8 3.8 23 66-88 4-26 (196)
403 1uf9_A TT1252 protein; P-loop, 92.7 0.072 2.5E-06 46.5 3.6 24 65-88 8-31 (203)
404 1y63_A LMAJ004144AAA protein; 92.7 0.08 2.7E-06 45.8 3.8 23 66-88 11-33 (184)
405 1z47_A CYSA, putative ABC-tran 92.6 0.058 2E-06 52.1 3.0 23 67-89 43-65 (355)
406 2pt7_A CAG-ALFA; ATPase, prote 92.5 0.042 1.4E-06 52.6 2.0 24 66-89 172-195 (330)
407 2yyz_A Sugar ABC transporter, 92.5 0.059 2E-06 52.1 3.0 23 67-89 31-53 (359)
408 1e4v_A Adenylate kinase; trans 92.5 0.078 2.7E-06 47.0 3.5 22 67-88 2-23 (214)
409 3rlf_A Maltose/maltodextrin im 92.4 0.061 2.1E-06 52.4 2.9 23 67-89 31-53 (381)
410 2it1_A 362AA long hypothetical 92.4 0.062 2.1E-06 52.1 2.9 23 67-89 31-53 (362)
411 2c95_A Adenylate kinase 1; tra 92.4 0.083 2.8E-06 45.8 3.5 23 66-88 10-32 (196)
412 1via_A Shikimate kinase; struc 92.3 0.077 2.6E-06 45.3 3.2 22 67-88 6-27 (175)
413 4e22_A Cytidylate kinase; P-lo 92.3 0.074 2.5E-06 48.7 3.3 23 65-87 27-49 (252)
414 2v54_A DTMP kinase, thymidylat 92.3 0.084 2.9E-06 46.2 3.5 24 66-89 5-28 (204)
415 3iij_A Coilin-interacting nucl 92.3 0.089 3E-06 45.1 3.6 23 66-88 12-34 (180)
416 1g29_1 MALK, maltose transport 92.3 0.065 2.2E-06 52.2 3.0 23 67-89 31-53 (372)
417 1zd8_A GTP:AMP phosphotransfer 92.3 0.08 2.7E-06 47.5 3.4 23 66-88 8-30 (227)
418 2chg_A Replication factor C sm 92.2 0.59 2E-05 40.7 9.1 24 67-90 40-63 (226)
419 1v43_A Sugar-binding transport 92.2 0.067 2.3E-06 52.0 2.9 23 67-89 39-61 (372)
420 3tlx_A Adenylate kinase 2; str 92.2 0.094 3.2E-06 47.7 3.8 25 64-88 28-52 (243)
421 2grj_A Dephospho-COA kinase; T 92.2 0.089 3E-06 46.1 3.4 26 63-88 10-35 (192)
422 2cdn_A Adenylate kinase; phosp 92.1 0.11 3.7E-06 45.6 4.0 24 65-88 20-43 (201)
423 4a1f_A DNAB helicase, replicat 92.1 0.13 4.6E-06 49.2 4.9 29 66-94 47-75 (338)
424 3d31_A Sulfate/molybdate ABC t 92.1 0.057 1.9E-06 52.1 2.2 23 67-89 28-50 (348)
425 2w0m_A SSO2452; RECA, SSPF, un 92.0 0.1 3.5E-06 46.5 3.7 27 66-92 24-50 (235)
426 1p9r_A General secretion pathw 92.0 0.092 3.1E-06 51.9 3.7 28 63-90 165-192 (418)
427 2oap_1 GSPE-2, type II secreti 92.0 0.061 2.1E-06 54.7 2.4 24 66-89 261-284 (511)
428 1ukz_A Uridylate kinase; trans 91.9 0.12 4E-06 45.3 4.0 23 66-88 16-38 (203)
429 3sr0_A Adenylate kinase; phosp 91.9 0.1 3.4E-06 46.3 3.5 23 66-88 1-23 (206)
430 1nij_A Hypothetical protein YJ 91.9 0.086 2.9E-06 50.1 3.2 24 65-88 4-27 (318)
431 2bwj_A Adenylate kinase 5; pho 91.8 0.11 3.6E-06 45.3 3.5 23 66-88 13-35 (199)
432 1zuh_A Shikimate kinase; alpha 91.6 0.12 4.2E-06 43.7 3.7 23 66-88 8-30 (168)
433 3be4_A Adenylate kinase; malar 91.6 0.12 4E-06 46.0 3.7 23 66-88 6-28 (217)
434 2xb4_A Adenylate kinase; ATP-b 91.6 0.12 4E-06 46.3 3.7 22 67-88 2-23 (223)
435 1vht_A Dephospho-COA kinase; s 91.6 0.11 3.7E-06 46.2 3.4 22 66-87 5-26 (218)
436 1qf9_A UMP/CMP kinase, protein 91.6 0.14 4.8E-06 44.1 4.1 23 66-88 7-29 (194)
437 1oxx_K GLCV, glucose, ABC tran 91.5 0.056 1.9E-06 52.2 1.5 23 67-89 33-55 (353)
438 3kta_A Chromosome segregation 91.5 0.097 3.3E-06 44.9 2.9 23 67-89 28-50 (182)
439 2vp4_A Deoxynucleoside kinase; 91.4 0.08 2.7E-06 47.7 2.4 24 65-88 20-43 (230)
440 1e6c_A Shikimate kinase; phosp 91.4 0.11 3.8E-06 44.0 3.2 22 67-88 4-25 (173)
441 1zak_A Adenylate kinase; ATP:A 91.3 0.11 3.7E-06 46.4 3.1 23 66-88 6-28 (222)
442 2iyv_A Shikimate kinase, SK; t 91.3 0.11 3.9E-06 44.6 3.1 22 67-88 4-25 (184)
443 1uj2_A Uridine-cytidine kinase 91.2 0.12 4.1E-06 47.2 3.3 24 65-88 22-45 (252)
444 1m7g_A Adenylylsulfate kinase; 91.2 0.17 5.8E-06 44.7 4.3 29 65-93 25-54 (211)
445 1gvn_B Zeta; postsegregational 91.2 0.13 4.6E-06 48.0 3.7 24 65-88 33-56 (287)
446 2ze6_A Isopentenyl transferase 91.1 0.14 4.7E-06 46.9 3.7 22 67-88 3-24 (253)
447 3qf7_A RAD50; ABC-ATPase, ATPa 91.1 0.47 1.6E-05 45.9 7.6 24 67-90 25-48 (365)
448 2npi_A Protein CLP1; CLP1-PCF1 91.0 0.1 3.5E-06 52.3 2.8 26 65-90 138-163 (460)
449 2vli_A Antibiotic resistance p 90.9 0.11 3.7E-06 44.6 2.6 23 66-88 6-28 (183)
450 2vhj_A Ntpase P4, P4; non- hyd 90.9 0.49 1.7E-05 44.8 7.2 22 67-88 125-146 (331)
451 2p5t_B PEZT; postsegregational 90.9 0.12 4E-06 47.3 2.9 25 65-89 32-56 (253)
452 2orw_A Thymidine kinase; TMTK, 90.8 1 3.5E-05 38.8 8.9 29 67-95 5-33 (184)
453 2x8a_A Nuclear valosin-contain 90.8 0.13 4.6E-06 47.7 3.3 22 67-88 46-67 (274)
454 1cr0_A DNA primase/helicase; R 90.8 0.15 5.1E-06 47.7 3.7 27 66-92 36-62 (296)
455 2obl_A ESCN; ATPase, hydrolase 90.8 0.13 4.6E-06 49.5 3.4 23 66-88 72-94 (347)
456 4eaq_A DTMP kinase, thymidylat 90.8 0.18 6.1E-06 45.4 4.0 27 65-91 26-52 (229)
457 3pg5_A Uncharacterized protein 90.7 0.39 1.3E-05 46.4 6.7 30 67-96 3-33 (361)
458 3nwj_A ATSK2; P loop, shikimat 90.7 0.14 4.8E-06 46.8 3.3 24 65-88 48-71 (250)
459 3r20_A Cytidylate kinase; stru 90.6 0.17 5.7E-06 45.8 3.6 24 65-88 9-32 (233)
460 3bh0_A DNAB-like replicative h 90.6 0.25 8.4E-06 46.9 5.0 28 66-93 69-96 (315)
461 3euj_A Chromosome partition pr 90.5 0.14 4.9E-06 51.4 3.4 24 66-89 30-53 (483)
462 1f2t_A RAD50 ABC-ATPase; DNA d 90.5 0.15 5.1E-06 42.6 3.0 23 67-89 25-47 (149)
463 1yqt_A RNAse L inhibitor; ATP- 90.5 0.13 4.5E-06 52.6 3.2 24 66-89 48-71 (538)
464 1ak2_A Adenylate kinase isoenz 90.4 0.17 6E-06 45.4 3.7 23 66-88 17-39 (233)
465 1ixz_A ATP-dependent metallopr 90.4 0.15 5.2E-06 46.4 3.3 23 67-89 51-73 (254)
466 2axn_A 6-phosphofructo-2-kinas 90.1 0.44 1.5E-05 48.5 6.7 25 66-90 36-60 (520)
467 1q57_A DNA primase/helicase; d 90.1 0.42 1.4E-05 48.4 6.5 27 66-92 243-269 (503)
468 3bgw_A DNAB-like replicative h 90.1 1 3.5E-05 44.7 9.3 29 66-94 198-226 (444)
469 3ozx_A RNAse L inhibitor; ATP 90.0 0.14 4.8E-06 52.4 2.9 27 63-89 23-49 (538)
470 3igf_A ALL4481 protein; two-do 89.9 1.1 3.8E-05 43.4 9.0 31 67-97 4-34 (374)
471 3umf_A Adenylate kinase; rossm 89.9 0.25 8.6E-06 44.1 4.1 23 66-88 30-52 (217)
472 2f6r_A COA synthase, bifunctio 89.9 0.18 6.3E-06 46.9 3.3 22 65-86 75-96 (281)
473 2w58_A DNAI, primosome compone 89.8 0.25 8.5E-06 43.1 4.1 26 66-91 55-80 (202)
474 3b5x_A Lipid A export ATP-bind 89.7 0.16 5.3E-06 52.7 3.0 24 66-89 370-393 (582)
475 3gmt_A Adenylate kinase; ssgci 89.6 0.23 8E-06 44.7 3.7 25 64-88 7-31 (230)
476 2dpy_A FLII, flagellum-specifi 89.5 0.18 6.3E-06 50.1 3.3 23 66-88 158-180 (438)
477 1in4_A RUVB, holliday junction 89.5 0.2 7E-06 47.8 3.5 24 66-89 52-75 (334)
478 1iy2_A ATP-dependent metallopr 89.5 0.2 6.8E-06 46.4 3.3 23 67-89 75-97 (278)
479 3b60_A Lipid A export ATP-bind 89.4 0.15 5E-06 52.9 2.5 24 66-89 370-393 (582)
480 3j16_B RLI1P; ribosome recycli 89.4 0.18 6.1E-06 52.4 3.2 24 66-89 104-127 (608)
481 1xx6_A Thymidine kinase; NESG, 89.4 1.4 4.9E-05 38.2 8.6 33 66-98 9-41 (191)
482 1svm_A Large T antigen; AAA+ f 89.3 0.22 7.4E-06 48.5 3.5 25 64-88 168-192 (377)
483 2cvh_A DNA repair and recombin 89.3 0.21 7.2E-06 44.0 3.2 22 66-87 21-42 (220)
484 1q3t_A Cytidylate kinase; nucl 89.3 0.26 8.9E-06 44.4 3.9 25 64-88 15-39 (236)
485 3ake_A Cytidylate kinase; CMP 89.2 0.26 8.8E-06 43.1 3.7 22 67-88 4-25 (208)
486 1jbk_A CLPB protein; beta barr 89.1 0.27 9.2E-06 41.8 3.7 27 64-90 42-68 (195)
487 3foz_A TRNA delta(2)-isopenten 89.0 0.28 9.7E-06 46.2 3.9 23 66-88 11-33 (316)
488 1yqt_A RNAse L inhibitor; ATP- 88.9 0.2 7E-06 51.2 3.2 23 67-89 314-336 (538)
489 1n0w_A DNA repair protein RAD5 88.9 0.23 7.7E-06 44.6 3.2 23 66-88 25-47 (243)
490 1xwi_A SKD1 protein; VPS4B, AA 88.9 0.98 3.4E-05 42.7 7.7 25 64-88 44-68 (322)
491 3bk7_A ABC transporter ATP-bin 88.7 0.18 6.3E-06 52.3 2.7 24 66-89 118-141 (607)
492 2yl4_A ATP-binding cassette SU 88.6 0.15 5.1E-06 53.0 1.9 24 66-89 371-394 (595)
493 1a7j_A Phosphoribulokinase; tr 88.5 0.15 5.2E-06 47.7 1.7 26 65-90 5-30 (290)
494 3qf4_B Uncharacterized ABC tra 88.5 0.16 5.4E-06 52.8 2.0 24 66-89 382-405 (598)
495 2dr3_A UPF0273 protein PH0284; 88.5 0.43 1.5E-05 42.8 4.7 27 67-93 25-51 (247)
496 2v1u_A Cell division control p 88.5 1.4 4.9E-05 42.1 8.8 28 63-90 42-69 (387)
497 3ozx_A RNAse L inhibitor; ATP 88.4 0.2 6.8E-06 51.3 2.7 23 67-89 296-318 (538)
498 1ltq_A Polynucleotide kinase; 88.4 0.29 9.8E-06 45.7 3.6 22 66-87 3-24 (301)
499 3bk7_A ABC transporter ATP-bin 88.3 0.24 8.1E-06 51.5 3.2 23 67-89 384-406 (607)
500 1tf7_A KAIC; homohexamer, hexa 88.2 0.84 2.9E-05 46.5 7.2 127 67-194 41-188 (525)
No 1
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=9.2e-69 Score=538.27 Aligned_cols=386 Identities=58% Similarity=0.974 Sum_probs=346.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
++.++|+++||+|+|||||+++|++...+.|...+...+.+|..++|+++|+|++.....++..+..++|||||||++|.
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence 35789999999999999999999987766665544433456888899999999999888888888999999999999999
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 222 (451)
.++..+++.+|++|+|+|++++.+.|+++|+.++...++|++|+++||||+.++++.++.+.+++.++++.+++.++.+|
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETP 160 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCc
Confidence 99999999999999999999999999999999999999998778999999986566677777889999999988666789
Q ss_pred eeeccccccccCCCcccchhh-HHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEe
Q 013007 223 IIRGSATSALQGKNEEIGKKA-ILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVL 301 (451)
Q Consensus 223 vi~~Sa~~g~~~~~~~~~~~~-i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~ 301 (451)
++++||++|.++.++.. ..+ +.+|+++|.+++|.|.++.++||+++|+++|.++|+|+|++|+|.+|+|++||.|.+.
T Consensus 161 ~i~~SA~~g~n~~~~~~-~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~ 239 (397)
T 1d2e_A 161 IIVGSALCALEQRDPEL-GLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFL 239 (397)
T ss_dssp EEECCHHHHHTTCCTTT-THHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEE
T ss_pred EEEeehhhcccccCCCc-cCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEe
Confidence 99999999876543221 135 8999999999999888888999999999999999999999999999999999999998
Q ss_pred cccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEEEeecCCCCcccccc
Q 013007 302 GLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFF 381 (451)
Q Consensus 302 p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~ 381 (451)
|.+. +..++|++|+.+++++++|.|||+|++.|+|++..++++||+|++++.++++++|+|++.||++++++++++|.
T Consensus 240 ~~~~--~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~ 317 (397)
T 1d2e_A 240 GHSK--NIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFV 317 (397)
T ss_dssp ETTE--EEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCCEEEEEEEEEECCGGGTSCSSCBC
T ss_pred CCCC--CeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeCCCCCCcccEEEEEEEEeccccccCccccC
Confidence 8531 35789999999999999999999999999999999999999999988888899999999999987766778999
Q ss_pred cCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEeeCCcEEEEEEEEeecC
Q 013007 382 SNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 382 ~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~~~tig~G~I~~~~~ 451 (451)
+||++++|+++.+++|+|...++++++++||.+.|+|+|.+|+|+++|+||+||++++|+|+|+|+++++
T Consensus 318 ~g~~~~~~~~t~~~~~~i~l~~~~~~l~~~~~~~v~~~~~~p~~~~~~~r~~lr~~~~ti~~G~i~~~~~ 387 (397)
T 1d2e_A 318 SHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPA 387 (397)
T ss_dssp TTCCCEEEETTEEEEEEEECCSSCCCBCTTCEEEEEEEEEEEECCCTTCEEEEEETTEEEEEEEEEECCC
T ss_pred CCCEEEEEEecCEEEEEEEEcCCcccccCCCEEEEEEEECCeEEEccCCeEEEEeCCeEEEEEEEeeccc
Confidence 9999999999999999998545578999999999999999999999999999999999999999998763
No 2
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=3.9e-68 Score=535.55 Aligned_cols=390 Identities=70% Similarity=1.126 Sum_probs=345.8
Q ss_pred hccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCc-cceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC
Q 013007 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGK-AKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (451)
Q Consensus 59 ~~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~-~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (451)
+.+.++.++|+++||+|+|||||+++|++...+.|. ..+..++.+|..++|+.+|+|++.....++..+..++||||||
T Consensus 5 ~~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG 84 (405)
T 2c78_A 5 FVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPG 84 (405)
T ss_dssp ----CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCC
T ss_pred ccCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCC
Confidence 344667899999999999999999999987666664 2222233578899999999999998888888889999999999
Q ss_pred hHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
|++|..++..+++.+|++|+|+|++++.+.|+++++..+..+++|++|+|+||+|+.++++.++.+.+++.++++.+++.
T Consensus 85 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 85 HADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp SGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999988899999999865566677777888999998886
Q ss_pred CCCCCeeecccccccc----------CCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEE
Q 013007 218 GDEIPIIRGSATSALQ----------GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~----------~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v 287 (451)
++..|++++||++|.+ +...|+ .++.+|+++|.+++|.|.++.++||+++|+++|+++|+|+|++|+|
T Consensus 165 ~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~--~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v 242 (405)
T 2c78_A 165 GDEVPVIRGSALLALEQMHRNPKTRRGENEWV--DKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 242 (405)
T ss_dssp TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHH--HHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEEC
T ss_pred ccCCCEEEccHHHhhhhhccccccccCCCccc--ccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEE
Confidence 6678999999999854 222222 4589999999999998888889999999999999999999999999
Q ss_pred EeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEE
Q 013007 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIY 367 (451)
Q Consensus 288 ~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~ 367 (451)
.+|+|++||.|.+.|.+.+ ...++|++|+.+++++++|.|||+|++.|+|++..++++||+|++++.+++++.|+|++.
T Consensus 243 ~~G~l~~gd~v~~~~~~~~-~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~~~~~~~~f~a~v~ 321 (405)
T 2c78_A 243 ERGKVKVGDEVEIVGLAPE-TRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVY 321 (405)
T ss_dssp CBSEEETTCEEEEESSSSS-CEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTCEEESTTSSEEEEEEEEEEE
T ss_pred ecccccCCCEEEEeCCCCC-eeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCCCCceeEEEEEEEE
Confidence 9999999999999985421 257999999999999999999999999999999999999999999988888999999999
Q ss_pred EeecCCCCcccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEeeCCcEEEEEEEE
Q 013007 368 VLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVS 447 (451)
Q Consensus 368 ~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~~~tig~G~I~ 447 (451)
||++++++++++|.+||++++|+++.+++|+|...++++++++||.+.|+|+|.+|+|+++|+||+||++|+|+|+|+|+
T Consensus 322 ~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~~~~~~v~~~~~~p~~~~~~~rf~lr~~~~ti~~G~i~ 401 (405)
T 2c78_A 322 VLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVT 401 (405)
T ss_dssp ECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEECCTTCCCBCTTCEEEEEEEEEEEEEECTTCEEEEEETTEEEEEEEEE
T ss_pred EecccCCCccccccCCceEEEEEcccEEEEEEEEccCccccCCCCEEEEEEEECceEEEccCCEEEEEcCCeEEEEEEEE
Confidence 99987666778999999999999999999999854556799999999999999999999999999999999999999999
Q ss_pred eecC
Q 013007 448 KVIS 451 (451)
Q Consensus 448 ~~~~ 451 (451)
++++
T Consensus 402 ~~~~ 405 (405)
T 2c78_A 402 KILE 405 (405)
T ss_dssp EECC
T ss_pred eccC
Confidence 9875
No 3
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=4.2e-66 Score=524.37 Aligned_cols=379 Identities=28% Similarity=0.433 Sum_probs=333.8
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHH---------------HhcCccceeeeeccCCchhhhhcCceEEeeEEEeee
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 125 (451)
..++++||+++||+|+|||||+++|+... .+.|+..+.+.+.+|..++|+++|+|++.....+++
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 35678999999999999999999996431 234556666778899999999999999999999999
Q ss_pred CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCC-------ccHHHHHHHHHHcCCCeEEEEEeeccCCC---
Q 013007 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-------PQTKEHILLARQVGVPSLVCFLNKVDLVE--- 195 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~-------~~t~~~l~~~~~~~ip~iivviNK~D~~~--- 195 (451)
+++.++|||||||++|.++|..+++.+|++|||||+++|.. +|+++|+.++..+++|++|+|+||||+.+
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 99999999999999999999999999999999999999986 79999999999999998889999999964
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCC-CCCeeeccccccccCCCc--ccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEE
Q 013007 196 DEELLELVEMELRELLSFYKFPGD-EIPIIRGSATSALQGKNE--EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIED 272 (451)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~-~~pvi~~Sa~~g~~~~~~--~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~ 272 (451)
.++.++.+.+++.++++.+++... .+|++++||++|.+.... ..+|+....|++.|.. +|+|.+..++|++|+|++
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~r~~v~~ 251 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDN-LPNFNRSVDGPIRLPIVD 251 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHh-CCCCccCCCCCeEEEEEE
Confidence 355677788889999999888543 689999999998655432 1245555678887765 677778889999999999
Q ss_pred EEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEec
Q 013007 273 VFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAK 352 (451)
Q Consensus 273 ~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 352 (451)
+|+ +.|+|++|+|.+|+|++||.|.++|.+ ..++|++|+.+++++++|.|||+|+++|+|++..++++||+|++
T Consensus 252 ~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~----~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~ 325 (439)
T 3j2k_7 252 KYK--DMGTVVLGKLESGSIFKGQQLVMMPNK----HNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCD 325 (439)
T ss_pred EEc--CCCeEEEEEEEeeEEecCCEEEEccCC----ceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecC
Confidence 986 789999999999999999999999854 47899999999999999999999999999999999999999999
Q ss_pred CCC-cccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-------------CCccccCCCCEEEEEE
Q 013007 353 PGS-VKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-------------GDVKMVMPGDNVNAAF 418 (451)
Q Consensus 353 ~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~ 418 (451)
++. ++.++.|+|++.||+++ .+|..||+|.+|+|+.+++|+|..+ .++++++.||.+.|+|
T Consensus 326 ~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~ 400 (439)
T 3j2k_7 326 PSNLCHSGRTFDVQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARL 400 (439)
T ss_pred CCCCCceeeEEEEEEEEeCCC-----CcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEE
Confidence 876 45689999999999984 5799999999999999999999765 2467899999999999
Q ss_pred EeCCeEeeecC------CeEEEeeCCcEEEEEEEEeecC
Q 013007 419 ELISPLPLQQG------QRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 419 ~~~~p~~~~~~------~rfvlr~~~~tig~G~I~~~~~ 451 (451)
++.+|+|++++ +||+|||+|+|+|+|+|++++.
T Consensus 401 ~~~~p~~~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~~ 439 (439)
T 3j2k_7 401 RTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVQ 439 (439)
T ss_pred EeCCeEEEeeccccccCCCEEEEECCceEEEEEEEEecC
Confidence 99999999987 7999999999999999999873
No 4
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=8.3e-65 Score=547.05 Aligned_cols=387 Identities=70% Similarity=1.137 Sum_probs=332.8
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (451)
..++.++|+++||+|+|||||+++|++...+.|...+..++.+|..++|+++|+|++.....++..+..++|||||||++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 45678999999999999999999999876666654433334578889999999999998888888889999999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
|..++..+++.+|++|+|||++++.+.|+++|+.++...++|++|+|+||||+.++++.++.+.+++.++++.+++.++.
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~ 451 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDD 451 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999988899999999876666777778899999999886677
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEE
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEV 300 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i 300 (451)
+|++++||++|+++...|+ .++.+|+++|.+.+|.|.++.++||+++|+++|+++|+|+|++|+|.+|+|++||+|.+
T Consensus 452 vp~IpvSAktG~ng~~~w~--eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I 529 (1289)
T 3avx_A 452 TPIVRGSALKALEGDAEWE--AKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI 529 (1289)
T ss_dssp CCEEECCSTTTTTCCHHHH--HHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEE
T ss_pred eeEEEEEeccCCCCCcccc--ccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEEE
Confidence 9999999999866532222 68999999999999988888899999999999999999999999999999999999999
Q ss_pred ecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEEEeecCCCCccccc
Q 013007 301 LGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAF 380 (451)
Q Consensus 301 ~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i 380 (451)
.|.+. ...++|++|+.+++++++|.|||+|++.|+|++..++++||+|++++.+.+++.|+|++.||+++++++++++
T Consensus 530 ~ps~~--~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~~~~~~~F~A~V~~L~~~egg~~~pi 607 (1289)
T 3avx_A 530 VGIKE--TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPF 607 (1289)
T ss_dssp ESSSS--CEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCEEEEEEEEEEECCGGGTSCSSCB
T ss_pred ecCCC--ceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEecCCCCccceeEEEEEEEEccccccccccc
Confidence 98542 2578999999999999999999999999999999999999999998888889999999999998766667789
Q ss_pred ccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEeeCCcEEEEEEEEeecC
Q 013007 381 FSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 381 ~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~~~tig~G~I~~~~~ 451 (451)
.+||+|++|+++.+++|+|...++++.+++||.+.|+|+|.+|+|+++|+||+||++|+|||+|+|+++++
T Consensus 608 ~~G~~p~l~igT~~vtg~I~L~~~~~~L~~Gd~a~V~L~l~~Pi~ve~g~RFiLRd~grTIG~G~V~~v~~ 678 (1289)
T 3avx_A 608 FKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 678 (1289)
T ss_dssp CTTCCCEEECSSCEEEEEEECCTTCCCBCTTCCCEEEEEEEEEEECCTTCEEEEEETTEEEEEEEEEEECC
T ss_pred cCCCceEEEEeeeeEEEEEEECCCcccccCCCEEEEEEEECceEEEccCCEEEEEeCCeEEEEEEEeeech
Confidence 99999999999999999998556678999999999999999999999999999999999999999998753
No 5
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=7.8e-65 Score=517.71 Aligned_cols=380 Identities=34% Similarity=0.495 Sum_probs=331.5
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHH---------------HhcCccceeeeeccCCchhhhhcCceEEeeEEEeee
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 125 (451)
+.++.++|+++||+|+|||||+++|++.. .+.|++.+.+.+.+|..++|+++|+|++.....++.
T Consensus 3 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~ 82 (458)
T 1f60_A 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (458)
T ss_dssp CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec
Confidence 35678999999999999999999998652 234555555555678899999999999999888998
Q ss_pred CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCc-------cHHHHHHHHHHcCCCeEEEEEeeccCCC-hH
Q 013007 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP-------QTKEHILLARQVGVPSLVCFLNKVDLVE-DE 197 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~-------~t~~~l~~~~~~~ip~iivviNK~D~~~-~~ 197 (451)
.+..++|||||||++|.+++..+++.+|++|||||++++..+ |+++|+.++..+++|++|+|+||||+.+ ++
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCH
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCH
Confidence 899999999999999999999999999999999999987655 9999999999999988889999999985 45
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcc--cchhh------------HHHHHHHHHhhCCCCCcCCC
Q 013007 198 ELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEE--IGKKA------------ILKLMDAVDEYIPDPERQLD 263 (451)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~--~~~~~------------i~~Ll~~l~~~lp~~~~~~~ 263 (451)
+.++.+.+++.++++.+++..+++|++++||++|.+..... .+|+. ...|+++|.. +++|.+..+
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p~~~~~ 241 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPTD 241 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhc-cCCCcccCC
Confidence 66777888899999988875556899999999886653211 11221 3468888775 566778889
Q ss_pred CCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccC
Q 013007 264 KPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRED 343 (451)
Q Consensus 264 ~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~ 343 (451)
.|++|+|+++|+++|+|+|++|+|++|.+++||+|.++|.+ ..++|++|+.++.++++|.|||+|++.|+|++..+
T Consensus 242 ~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~----~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~ 317 (458)
T 1f60_A 242 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG----VTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKE 317 (458)
T ss_dssp SCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT----EEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTT
T ss_pred CCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCC----ceEEEeEEEECCeEEEEEcCCCEEEEEEcCCcccc
Confidence 99999999999999999999999999999999999999853 57999999999999999999999999999998899
Q ss_pred CCCCeEEecCC--CcccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-------------CCcccc
Q 013007 344 VQRGQVIAKPG--SVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-------------GDVKMV 408 (451)
Q Consensus 344 i~~G~vl~~~~--~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l 408 (451)
+++||+|++++ ++..+++|+|++.||+++ .+|.+||++++|+++.+++|+|..+ +++++|
T Consensus 318 i~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l 392 (458)
T 1f60_A 318 IRRGNVCGDAKNDPPKGCASFNATVIVLNHP-----GQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFL 392 (458)
T ss_dssp SCTTCEEEETTSSCCCCCSEEEEEEEECSCS-----CCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCB
T ss_pred cCceeEEecCCCCCCceeeEEEEEEEEeCCC-----CCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCcccc
Confidence 99999999986 467899999999999864 6899999999999999999999866 236789
Q ss_pred CCCCEEEEEEEeCCeEeeecCC------eEEEeeCCcEEEEEEEEeec
Q 013007 409 MPGDNVNAAFELISPLPLQQGQ------RFALREGGRTVGAGVVSKVI 450 (451)
Q Consensus 409 ~~g~~~~v~~~~~~p~~~~~~~------rfvlr~~~~tig~G~I~~~~ 450 (451)
++||.+.|+|+|.+|+|+++|+ ||+||++|+|+|+|+|+++.
T Consensus 393 ~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~ 440 (458)
T 1f60_A 393 KSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVD 440 (458)
T ss_dssp CTTCEEEEEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEE
T ss_pred CCCCEEEEEEEECCeEEEecCccCCCCCcEEEEECCeEEEEEEEEeec
Confidence 9999999999999999999987 99999999999999999875
No 6
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=4.5e-64 Score=509.77 Aligned_cols=379 Identities=36% Similarity=0.576 Sum_probs=319.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHH---------------HhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 126 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~ 126 (451)
.++.++|+++||+|+|||||+++|+... .+.|+..+.+.+.+|..++|+++|+|++.....+++.
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 4567899999999999999999998642 2234444444456789999999999999998888888
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCC-------CCccHHHHHHHHHHcCCCeEEEEEeeccCCC---h
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-------PMPQTKEHILLARQVGVPSLVCFLNKVDLVE---D 196 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g-------~~~~t~~~l~~~~~~~ip~iivviNK~D~~~---~ 196 (451)
+..++|||||||++|..++..+++.+|++|+|+|++++ +..|+++|+.++..+++|++|+++||||+.+ +
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999998 8899999999999999987889999999986 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcc--cchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEE
Q 013007 197 EELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEE--IGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVF 274 (451)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~--~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~ 274 (451)
++.++.+.+++.++++.+++....++++++||++|.+..... ..|+....|+++|.. +++|.+..++|++++|+++|
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~-~~~p~~~~~~~~~~~v~~v~ 241 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQ-LELPPKPVDKPLRIPIQDVY 241 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTT-CCCCCCGGGSCCBEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhc-cCCCCCCCCCCeEEEEEEEE
Confidence 466777888899999998886567899999999885442211 122222478888776 45576777899999999999
Q ss_pred eeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCC
Q 013007 275 SIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354 (451)
Q Consensus 275 ~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 354 (451)
++++.|++++|+|.+|+|++||.|.+.|.+ ..++|++|+.+++++++|.|||+|+++|+|++..++++||+|++++
T Consensus 242 ~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~----~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~ 317 (435)
T 1jny_A 242 SISGVGTVPVGRVESGVLKVGDKIVFMPAG----KVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPN 317 (435)
T ss_dssp EETTTEEEEEEECCBSCEETTCEEEEETTT----EEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTT
T ss_pred EeCCCcEEEEEEEecCeEEcCCEEEECCce----eEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCC
Confidence 999999999999999999999999999853 5799999999999999999999999999999989999999999987
Q ss_pred -CcccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-------------CCccccCCCCEEEEEEEe
Q 013007 355 -SVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-------------GDVKMVMPGDNVNAAFEL 420 (451)
Q Consensus 355 -~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~~~ 420 (451)
++..+.+|+|++.||+++ .+|.+||++++|+++.+++|+|..+ +++++|++||.+.|+|++
T Consensus 318 ~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~ 392 (435)
T 1jny_A 318 NPPTVADEFTARIIVVWHP-----TALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKP 392 (435)
T ss_dssp SCCCEESEEEEEEEECCCS-----SCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEE
T ss_pred CCceEeEEEEEEEEEECCC-----CcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEE
Confidence 467799999999999873 6899999999999999999999866 236789999999999999
Q ss_pred CCeEeeecCC------eEEEeeCCcEEEEEEEEeec
Q 013007 421 ISPLPLQQGQ------RFALREGGRTVGAGVVSKVI 450 (451)
Q Consensus 421 ~~p~~~~~~~------rfvlr~~~~tig~G~I~~~~ 450 (451)
.+|+|+++|+ ||+||++|+|||+|+|+++.
T Consensus 393 ~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~ 428 (435)
T 1jny_A 393 IKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVK 428 (435)
T ss_dssp SSCEECCCTTTSGGGTEEEEEETTEEEEEEEEEEEE
T ss_pred CceEEEecCCcCCcCccEEEEECCeEEEEEEEeeec
Confidence 9999999987 99999999999999999875
No 7
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=8.2e-63 Score=506.97 Aligned_cols=383 Identities=25% Similarity=0.368 Sum_probs=316.7
Q ss_pred hccCcceeEEEEEcCCCCcHHHHHHHHHHHH---------------HhcCccceeeeeccCCchhhhhcCceEEeeEEEe
Q 013007 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY 123 (451)
Q Consensus 59 ~~~~~~~~~I~viG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~ 123 (451)
+...++.++|+++|++|+|||||+++|++.. .+.|...+...+.+|...+|+++|+|++.....+
T Consensus 27 l~~~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~ 106 (483)
T 3p26_A 27 VKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF 106 (483)
T ss_dssp HHHSCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEE
T ss_pred HhcCCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEE
Confidence 3446788999999999999999999998651 1235555666778899999999999999999999
Q ss_pred eeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCC-------CCccHHHHHHHHHHcCCCeEEEEEeeccCCC-
Q 013007 124 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-------PMPQTKEHILLARQVGVPSLVCFLNKVDLVE- 195 (451)
Q Consensus 124 ~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g-------~~~~t~~~l~~~~~~~ip~iivviNK~D~~~- 195 (451)
++.+..++|||||||++|..++..+++.+|++|+|+|++++ +..|+++|+.++..++++++|+|+||||+.+
T Consensus 107 ~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 107 STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp ECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTT
T ss_pred ecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccc
Confidence 99999999999999999999999999999999999999997 5689999999999999887999999999986
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCC--------cccchhhHHHHHHHHHhhCCC--CCcCCCCC
Q 013007 196 DEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKN--------EEIGKKAILKLMDAVDEYIPD--PERQLDKP 265 (451)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~--------~~~~~~~i~~Ll~~l~~~lp~--~~~~~~~p 265 (451)
.++.++++.+++.++++.+++....++++++||++|.+... +|+....+.++|+.+...+|. |.+..+.|
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p 266 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 266 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCc
Confidence 35667778888999999888866678999999999866543 244444567777777655554 56678999
Q ss_pred eeEEEEEEEeeC---CCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecc--------eeccEEecCCeEEE
Q 013007 266 FLMPIEDVFSIQ---GRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK--------KILDRGEAGDNVGL 334 (451)
Q Consensus 266 ~~~~v~~~~~~~---~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~--------~~v~~a~aG~~v~l 334 (451)
++|+|+++|+++ |.|+|++|+|.+|+|++||.|.++|.+ ..++|++|+.++ .++++|.|||+|++
T Consensus 267 ~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~----~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~ 342 (483)
T 3p26_A 267 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSE----QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTL 342 (483)
T ss_dssp CEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTT----EEEEEEEEEETTTC-----CCEESCEETTCEEEE
T ss_pred eEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCC----CeEEEEEEEEcCccccccccccccEECCCCEEEE
Confidence 999999999988 589999999999999999999999854 468999999984 89999999999999
Q ss_pred EeccccccCCCCCeEEecCCC--cccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe----------
Q 013007 335 LLRGLKREDVQRGQVIAKPGS--VKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL---------- 402 (451)
Q Consensus 335 ~l~~~~~~~i~~G~vl~~~~~--~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~---------- 402 (451)
+|++++..++++||+|++++. +..++.|+|++.||+++ .+|.+||++.+|+++.++.|+|..+
T Consensus 343 ~l~~~~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~ 417 (483)
T 3p26_A 343 KLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTA 417 (483)
T ss_dssp EEESCCGGGCCTTCEEECTTCCCCEECSEEEEEEEECSCS-----SCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEE
T ss_pred EEEecccccCCceEEEEcCCCCCCceeeEEEEEEEEECCC-----CCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCcc
Confidence 999998899999999999876 67899999999999864 6899999999999999999999866
Q ss_pred --CCccccCCCCEEEEEEEe---CCeEeeecC------CeEEEeeCCcEEEEEEEEeec
Q 013007 403 --GDVKMVMPGDNVNAAFEL---ISPLPLQQG------QRFALREGGRTVGAGVVSKVI 450 (451)
Q Consensus 403 --~~~~~l~~g~~~~v~~~~---~~p~~~~~~------~rfvlr~~~~tig~G~I~~~~ 450 (451)
+++++|+.||.+.|+|++ .+|+|++++ |||+||++|+|||+|+|+++.
T Consensus 418 ~~~~~~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~ 476 (483)
T 3p26_A 418 SKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEIT 476 (483)
T ss_dssp CCSCCSCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEEC
T ss_pred cccCccCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEEec
Confidence 346789999999999999 789999975 899999999999999999763
No 8
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-64 Score=524.25 Aligned_cols=380 Identities=27% Similarity=0.398 Sum_probs=293.0
Q ss_pred ccCcceeEEEEEcCCCCcHHHHHHHHHHHH---------------HhcCccceeeeeccCCchhhhhcCceEEeeEEEee
Q 013007 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE 124 (451)
Q Consensus 60 ~~~~~~~~I~viG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~ 124 (451)
...++.++|+++||+|+|||||+++|+... .+.|...+...+.+|..++|+++|+|++.....+.
T Consensus 172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~ 251 (592)
T 3mca_A 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251 (592)
T ss_dssp SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence 345678999999999999999999997532 23455566667789999999999999999998898
Q ss_pred eCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCC-------CccHHHHHHHHHHcCCCeEEEEEeeccCCC-h
Q 013007 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-------MPQTKEHILLARQVGVPSLVCFLNKVDLVE-D 196 (451)
Q Consensus 125 ~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~-------~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~ 196 (451)
+.++.++|||||||++|..+|..+++.+|++|||||+++|. ..|+++|+.++..+++|++|+|+||||+.+ .
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTC
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccccccc
Confidence 88899999999999999999999999999999999999864 899999999999999998989999999986 4
Q ss_pred HHHHHHHHHHHHHHH-HhcCCCCCCCCeeeccccccccCCCc----ccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEE
Q 013007 197 EELLELVEMELRELL-SFYKFPGDEIPIIRGSATSALQGKNE----EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIE 271 (451)
Q Consensus 197 ~~~~~~~~~~~~~~l-~~~~~~~~~~pvi~~Sa~~g~~~~~~----~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~ 271 (451)
++.++.+.+++.+++ +.+++....+|++++||++|.+.... ..+|+...+|++.|...+| |.+..+.||+++|+
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~v~ 410 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLSID 410 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchheee
Confidence 667777888888888 88888666789999999998655321 2345556689999988766 66778999999999
Q ss_pred EEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceecc-EEecCCeEEEEeccccccCCCCCeEE
Q 013007 272 DVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILD-RGEAGDNVGLLLRGLKREDVQRGQVI 350 (451)
Q Consensus 272 ~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~-~a~aG~~v~l~l~~~~~~~i~~G~vl 350 (451)
++|++ +.|++++|+|.+|+|++||.|.++|.+ ...+|++|+.++.+++ +|.|||+|+++|+|++..++++||+|
T Consensus 411 ~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~----~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl 485 (592)
T 3mca_A 411 DVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQ----EDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDIL 485 (592)
T ss_dssp EEEEE-TTEEEEEEEEEESEEETTCEEEETTTT----EEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEE
T ss_pred EEEec-CCeEEEEEEEeeeeEccCCEEEEccCC----ceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEe
Confidence 99999 999999999999999999999999854 4689999999999999 99999999999999999999999999
Q ss_pred ecCCC-cccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe----CCccccCCCCEEEEEEE-eCCeE
Q 013007 351 AKPGS-VKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL----GDVKMVMPGDNVNAAFE-LISPL 424 (451)
Q Consensus 351 ~~~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~----~~~~~l~~g~~~~v~~~-~~~p~ 424 (451)
++++. +..+..|+|++.||+++ .||.+||++++|+++.+++|+|... +++++|++||.+.|+|+ +.+|+
T Consensus 486 ~~~~~~~~~~~~f~a~v~~~~~~-----~pi~~g~~~~l~~~t~~~~~~i~l~~~~~~~~~~l~~gd~~~v~l~fl~~p~ 560 (592)
T 3mca_A 486 SNYENPVRRVRSFVAEIQTFDIH-----GPILSGSTLVLHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLF 560 (592)
T ss_dssp ECSSSCCEEESEEEEEEEECSCS-----SCEETTEEEEEECSSCEEEEEEEEEESSSSCCSEECSSCEEEEEEEESSSCE
T ss_pred ccCCCCccccCeEEEEEEEECCC-----ccCCCCCEEEEEEcCcEEEEEEEEEeccccchhccCCCCEEEEEEEECCCcE
Confidence 99876 56789999999999874 6899999999999999999999433 25789999999999999 88999
Q ss_pred ee------ecCCeEEEeeCCcEEEEEEEEeec
Q 013007 425 PL------QQGQRFALREGGRTVGAGVVSKVI 450 (451)
Q Consensus 425 ~~------~~~~rfvlr~~~~tig~G~I~~~~ 450 (451)
|+ .+++||+||++|+|||+|+|++|+
T Consensus 561 ~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 561 PLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp EECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred EEEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 99 456899999999999999999985
No 9
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=2.4e-63 Score=507.94 Aligned_cols=377 Identities=31% Similarity=0.440 Sum_probs=291.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHH---------------hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLA---------------EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 126 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~ 126 (451)
.++.++|+++||+|+|||||+++|+.... +.|+..+.+.+.+|..++|+++|+|++.....++++
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 46789999999999999999999975321 224444445567899999999999999988888888
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCC-------CccHHHHHHHHHHcCCCeEEEEEeeccCCC---h
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-------MPQTKEHILLARQVGVPSLVCFLNKVDLVE---D 196 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~-------~~~t~~~l~~~~~~~ip~iivviNK~D~~~---~ 196 (451)
+..++|||||||++|.++|..+++.+|++|||||+++|. .+|+++|+.++..+++|++|+|+||||+.+ +
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 999999999999999999999999999999999999986 479999999999999998889999999964 3
Q ss_pred HHHHHHHHHHHHHHHHhc-CCC-CCCCCeeeccccccccCCCcc----cchhhHHHHHHHHHhhCCCCCcCCCCCeeEEE
Q 013007 197 EELLELVEMELRELLSFY-KFP-GDEIPIIRGSATSALQGKNEE----IGKKAILKLMDAVDEYIPDPERQLDKPFLMPI 270 (451)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~-~~~-~~~~pvi~~Sa~~g~~~~~~~----~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v 270 (451)
++.++.+.+++.++++.+ ++. ..++|++++||++|.+..... .+|+....|++.|.. +|.|.++.++||+++|
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~p~~~~v 278 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDS-MTHLERKVNAPFIMPI 278 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHH-CCCCHHHHTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHh-CCCCcCCCCCCcEEEE
Confidence 566777888888999887 774 235889999999986653321 233333456766665 6777777899999999
Q ss_pred EEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec-ceeccEEecCCeEEEEeccccccCCCCCeE
Q 013007 271 EDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF-KKILDRGEAGDNVGLLLRGLKREDVQRGQV 349 (451)
Q Consensus 271 ~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 349 (451)
+++|+ +.|+|++|+|.+|+|++||.|.++|.+ ..++|++|+.+ ++++++|.|||+|+++|+| +..++++||+
T Consensus 279 ~~~~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~----~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~v 351 (467)
T 1r5b_A 279 ASKYK--DLGTILEGKIEAGSIKKNSNVLVMPIN----QTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYV 351 (467)
T ss_dssp CEEEE--SSSEEEEEECCBSEEETTEEEEEETTT----EEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCE
T ss_pred EEEEe--CCCeEEEEEEeeeEEeeCCEEEEccCC----eeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEE
Confidence 99987 578999999999999999999999853 46899999998 8999999999999999999 8889999999
Q ss_pred EecCC-CcccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEeC------------CccccCCCCEEEE
Q 013007 350 IAKPG-SVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLG------------DVKMVMPGDNVNA 416 (451)
Q Consensus 350 l~~~~-~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~------------~~~~l~~g~~~~v 416 (451)
|++++ +++.+++|+|++.||+++ .+|.+||++++|+++.+++|++..+. ++++|++||.+.|
T Consensus 352 l~~~~~~~~~~~~f~a~v~~l~~~-----~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~~~~~~~~~~~~l~~g~~~~v 426 (467)
T 1r5b_A 352 LTSTKNPVHATTRFIAQIAILELP-----SILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIA 426 (467)
T ss_dssp EECSSSCCCEEEEEEEEEEECSSC-----CCBSSCCCBEEESSSCCCCBEESSCCCCCCSSCCCCSSCCSBCCTTCBCCE
T ss_pred EeCCCCCCccceEEEEEEEEeCCC-----CccCCCCEEEEEEeCCEEEEEEEEEEEEecCCccccccCccccCCCCEEEE
Confidence 99987 567899999999999873 67999999999999999999986531 3668999999999
Q ss_pred EEEeCCeEeeecC------CeEEEeeCCcEEEEEEEEeecC
Q 013007 417 AFELISPLPLQQG------QRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 417 ~~~~~~p~~~~~~------~rfvlr~~~~tig~G~I~~~~~ 451 (451)
+|+|.+|+|+++| +||+||++++|+|+|+|+++++
T Consensus 427 ~l~~~~p~~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~~ 467 (467)
T 1r5b_A 427 ELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 467 (467)
T ss_dssp EEEEEEEEECCCTTTCHHHHEEEEECSSSCEEEEEEEEEEC
T ss_pred EEEECcEEEEEEcCcCCCCccEEEEECCeEEEEEEEEEecC
Confidence 9999999999999 3999999999999999999874
No 10
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-62 Score=510.78 Aligned_cols=382 Identities=25% Similarity=0.369 Sum_probs=330.1
Q ss_pred ccCcceeEEEEEcCCCCcHHHHHHHHHHHH---------------HhcCccceeeeeccCCchhhhhcCceEEeeEEEee
Q 013007 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE 124 (451)
Q Consensus 60 ~~~~~~~~I~viG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~ 124 (451)
...++.++|+++||+|+|||||+++|++.. .+.|...+...+.+|..+.|+.+|+|++.....+.
T Consensus 162 ~~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~ 241 (611)
T 3izq_1 162 KSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS 241 (611)
T ss_dssp CCCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE
T ss_pred hccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe
Confidence 335678999999999999999999997431 12355556666778899999999999999988899
Q ss_pred eCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCC-------CCccHHHHHHHHHHcCCCeEEEEEeeccCCC-h
Q 013007 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-------PMPQTKEHILLARQVGVPSLVCFLNKVDLVE-D 196 (451)
Q Consensus 125 ~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g-------~~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~ 196 (451)
+.+..++|||||||++|.+++..+++.+|++|+|||+++| ...|+++|+..+..++++++|+|+||||+.+ .
T Consensus 242 ~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 242 THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred cCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh
Confidence 9999999999999999999999999999999999999986 5789999999999999998999999999987 4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCC--------cccchhhHHHHHHHHHhhCCC--CCcCCCCCe
Q 013007 197 EELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKN--------EEIGKKAILKLMDAVDEYIPD--PERQLDKPF 266 (451)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~--------~~~~~~~i~~Ll~~l~~~lp~--~~~~~~~p~ 266 (451)
+..++.+.+++..+++.+++....++++++||++|.+... .|+....+.++++.+...+|. |.+..+.||
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~ 401 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPF 401 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccch
Confidence 5667778888889999888866678999999999865542 343333455555555444443 456788999
Q ss_pred eEEEEEEEeeC---CCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec--------ceeccEEecCCeEEEE
Q 013007 267 LMPIEDVFSIQ---GRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF--------KKILDRGEAGDNVGLL 335 (451)
Q Consensus 267 ~~~v~~~~~~~---~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~--------~~~v~~a~aG~~v~l~ 335 (451)
+|+|+++|+++ +.|+|++|+|.+|+|++||.|.++|.+ ..++|++|+.+ +.++++|.|||+|+++
T Consensus 402 r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~----~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~ 477 (611)
T 3izq_1 402 LFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSE----QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLK 477 (611)
T ss_dssp EEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTT----EEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEE
T ss_pred hhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCC----ceEEEEEEEEcccccccccccccceecCCCcceEE
Confidence 99999999988 589999999999999999999999854 46899999998 4899999999999999
Q ss_pred eccccccCCCCCeEEecCCC--cccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-----------
Q 013007 336 LRGLKREDVQRGQVIAKPGS--VKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL----------- 402 (451)
Q Consensus 336 l~~~~~~~i~~G~vl~~~~~--~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~----------- 402 (451)
|++++..++++||+|++++. +..++.|+|+|.||+++ .+|.+||++++|+++.+++|+|..+
T Consensus 478 l~~~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~ 552 (611)
T 3izq_1 478 LRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS 552 (611)
T ss_dssp ESSCCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECSCS-----SCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBC
T ss_pred eeeccHhhCcceEEccCCCCCCCceeeEEEEEEEEECCC-----CCCCCCCEEEEEECCeEeeEEeeeeeeeeccccccc
Confidence 99998899999999999876 67899999999999864 6899999999999999999999876
Q ss_pred -CCccccCCCCEEEEEEEe---CCeEeeecC------CeEEEeeCCcEEEEEEEEeec
Q 013007 403 -GDVKMVMPGDNVNAAFEL---ISPLPLQQG------QRFALREGGRTVGAGVVSKVI 450 (451)
Q Consensus 403 -~~~~~l~~g~~~~v~~~~---~~p~~~~~~------~rfvlr~~~~tig~G~I~~~~ 450 (451)
+++++|++||.+.|+|++ .+|+|++++ |||+||++|+|||+|+|++|.
T Consensus 553 ~~~~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~ 610 (611)
T 3izq_1 553 KKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEIT 610 (611)
T ss_dssp TTCSCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred ccCccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEEEec
Confidence 245689999999999999 789999985 799999999999999999874
No 11
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=8.9e-59 Score=471.03 Aligned_cols=374 Identities=24% Similarity=0.319 Sum_probs=308.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHH---h------------cCc--cceeeeeccCCchhhhhcCceEEeeEEEee
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLA---E------------EGK--AKAIAFDEIDKAPEEKKRGITIATAHVEYE 124 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~---~------------~g~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~ 124 (451)
.++.++|+++||+|+|||||+++|++... . .|. ..+...+.+|..++|+++|+|++.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 35678999999999999999999986531 0 011 111122346888999999999999998898
Q ss_pred eCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC-hHHHHHHH
Q 013007 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLELV 203 (451)
Q Consensus 125 ~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~~~~~~~~ 203 (451)
..+..++|||||||++|..++..++..+|++|+|+|+++++..|+++|+.++..++++++|+|+||+|+.+ +++.++.+
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i 180 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESI 180 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999988889999999986 35666777
Q ss_pred HHHHHHHHHhcCCCCCCCCeeeccccccccCCCc--ccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCce
Q 013007 204 EMELRELLSFYKFPGDEIPIIRGSATSALQGKNE--EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGT 281 (451)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~--~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~ 281 (451)
.+++.++++.+++.....+++++||++|.+.... ..+|+....|++.|.. +|.|.+..++|++++|+++++.++.|+
T Consensus 181 ~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~-i~~~~~~~~~~~~~~v~~v~~~~~~~~ 259 (434)
T 1zun_B 181 KADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILET-VEIASDRNYTDLRFPVQYVNRPNLNFR 259 (434)
T ss_dssp HHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHH-SCCTTCCCSSSCEEECCEEECSSSSCC
T ss_pred HHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhc-CCCcccCCCCCcEEEEEEEeccCCCce
Confidence 7788889888874335678999999988554321 1122322335554444 576777788999999999998877788
Q ss_pred EEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCc-cccc
Q 013007 282 VATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSV-KTYK 360 (451)
Q Consensus 282 v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~-~~~~ 360 (451)
.+.|+|.+|+|++||.|.++|.+ ...+|++|+.++.++++|.|||+|++.+++ ..++++||+|++++.+ ..++
T Consensus 260 g~~G~v~~G~l~~gd~v~~~p~~----~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~--~~~i~~G~~l~~~~~~~~~~~ 333 (434)
T 1zun_B 260 GFAGTLASGIVHKGDEIVVLPSG----KSSRVKSIVTFEGELEQAGPGQAVTLTMED--EIDISRGDLLVHADNVPQVSD 333 (434)
T ss_dssp EEEEECCBSCEETTCEEEETTTC----CEEEEEEEEETTEEESEECTTCEEEEEESS--CCCCCTTCEEEETTSCCCEEE
T ss_pred EEEEEEecceEeCCCEEEEecCC----eEEEEEEEEEcCcceeEecCCCEEEEEeCC--ccccCCccEEECCCCCCCccc
Confidence 89999999999999999999853 478999999999999999999999999874 4589999999998764 6789
Q ss_pred EEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEeC-----------CccccCCCCEEEEEEEeCCeEeeecC
Q 013007 361 KFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLG-----------DVKMVMPGDNVNAAFELISPLPLQQG 429 (451)
Q Consensus 361 ~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~l~~g~~~~v~~~~~~p~~~~~~ 429 (451)
.|+|++.||+. .+|.+||++++|+++.++.|+|..+. ++++|++||.+.|+|+|.+|+|+++|
T Consensus 334 ~f~a~~~~l~~------~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~d~~~v~~~~~~p~~~~~~ 407 (434)
T 1zun_B 334 AFDAMLVWMAE------EPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDGY 407 (434)
T ss_dssp EEEEEEEECCS------SCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEEEEEEECCCT
T ss_pred EEEEEEEEecc------ccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccccCccEeCCCCEEEEEEEECCeEEEccc
Confidence 99999999963 57999999999999999999998763 46789999999999999999999998
Q ss_pred C------eEEEeeC--CcEEEEEEEEe
Q 013007 430 Q------RFALREG--GRTVGAGVVSK 448 (451)
Q Consensus 430 ~------rfvlr~~--~~tig~G~I~~ 448 (451)
+ ||+||+. |+|||+|+|+.
T Consensus 408 ~~~~~~grf~l~d~~~~~tv~~G~i~~ 434 (434)
T 1zun_B 408 SSNRTTGAFIVIDRLTNGTVAAGMIIA 434 (434)
T ss_dssp TTCTTTTEEEEECTTTCCEEEEEEEEC
T ss_pred ccCCccceEEEEECCCCcEEEEEEEeC
Confidence 6 9999874 89999999973
No 12
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=1.1e-58 Score=458.78 Aligned_cols=331 Identities=20% Similarity=0.281 Sum_probs=292.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
+|+++||+|+|||||+++|+ ++|+|++.....+++.+..++|||||||++|.+++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHH
Confidence 99999999999999999996 458899988888988899999999999999999999
Q ss_pred HhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEe-eccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeee
Q 013007 147 TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLN-KVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviN-K~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~ 225 (451)
.+++.+|++|+||| ++++++|+++++.++..+++|.+|+++| |||+ + ++..+.+.++++++++.+++ ..+|+++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~-~~~~~~~~~~i~~~l~~~~~--~~~~ii~ 153 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-H-MHAIDELKAKLKVITSGTVL--QDWECIS 153 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C-HHHHHHHHHHHHHHTTTSTT--TTCEEEE
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C-HHHHHHHHHHHHHHHHhcCC--CceEEEe
Confidence 99999999999999 9999999999999999999997578999 9999 5 44455566678888877654 4689999
Q ss_pred --ccccc---cccCCCcccchhhHHHHHHHHHhhCCCCC---cC-CCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCC
Q 013007 226 --GSATS---ALQGKNEEIGKKAILKLMDAVDEYIPDPE---RQ-LDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296 (451)
Q Consensus 226 --~Sa~~---g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~---~~-~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd 296 (451)
+||++ + .|+++|++.|.+.+|++. .. ...|++++|+++|+++++|++++|+|.+|+|++||
T Consensus 154 ~~~SA~~~~~g----------~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~gd 223 (370)
T 2elf_A 154 LNTNKSAKNPF----------EGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKD 223 (370)
T ss_dssp CCCCTTSSSTT----------TTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETTC
T ss_pred cccccccCcCC----------CCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeCC
Confidence 99999 6 899999999988876431 12 45678999999999999999999999999999999
Q ss_pred EEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEEEeecCCCCc
Q 013007 297 EVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGR 376 (451)
Q Consensus 297 ~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~ 376 (451)
+|.+.|.+ ..++|++|+.+++++++|.|||+|+++|++++..++++||+|++ ++ +.+++|+|++.||+++
T Consensus 224 ~v~~~p~~----~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~-~~-~~~~~f~a~v~~l~~~---- 293 (370)
T 2elf_A 224 KTKIFPLD----RDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD-KE-IVTTDYTLECTVSKFT---- 293 (370)
T ss_dssp EEEEETTT----EEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES-CC-EEEEEEEEEEEECTTS----
T ss_pred EEEECCCC----cEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC-CC-ceeEEEEEEEEEECCC----
Confidence 99999853 57999999999999999999999999999998899999999998 66 8899999999999873
Q ss_pred ccccccCceeEEEEEeeeeeeeEEEeC--C--ccccCCCCEEEEEEEeCCeEeeecCCeEEEeeC---CcEEEEEEEE
Q 013007 377 HTAFFSNYRPQIYLRTADVTGKVELLG--D--VKMVMPGDNVNAAFELISPLPLQQGQRFALREG---GRTVGAGVVS 447 (451)
Q Consensus 377 ~~~i~~g~~~~~~~~~~~~~~~i~~~~--~--~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~---~~tig~G~I~ 447 (451)
.+|.+||++++|+++.++.|+|..+. . ...+++||.+.|+|+|.+|+|+++|+||+||++ ++|+|+|.|.
T Consensus 294 -~~i~~g~~~~~~~~t~~~~~~v~~l~~d~~~~~~~~~g~~~~v~l~~~~pi~~~~~~rfilr~~~~~~~tig~G~~~ 370 (370)
T 2elf_A 294 -KKIEPASVLHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLANLDLTQRFAAYGFSK 370 (370)
T ss_dssp -CCBCTTCEEEEEETTEEEEEEEEEEEETTEEESCBCTTCEEEEEEEEEEEEEECTTSCEEEECTTSSSCEEEEEEEC
T ss_pred -CCCCCCCEEEEEEcCCEEEEEEEEEEeCCCcceeecCCCEEEEEEEECcEEEEeCCCEEEEEECCCCCEEEEEEEeC
Confidence 68999999999999999999998872 1 135679999999999999999999999999986 4799999873
No 13
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=2.4e-57 Score=457.67 Aligned_cols=351 Identities=31% Similarity=0.493 Sum_probs=296.8
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC---------------
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--------------- 126 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--------------- 126 (451)
+++.++|+++||+|||||||+++|++. ..+..++|+++|+|++..+..+...
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~ 73 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 73 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTC-------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCC-------------ccccChhhhcCCcEEEEeeeeeeccccccccccccccccc
Confidence 567899999999999999999999843 2467788899999998765433320
Q ss_pred --------CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHHHHcCCCeEEEEEeeccCCChH
Q 013007 127 --------KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSLVCFLNKVDLVEDE 197 (451)
Q Consensus 127 --------~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~ 197 (451)
...++|||||||++|.+++.+++..+|++|||||++++. .+||++|+..+..++++++|+|+||+|+.+.+
T Consensus 74 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 74 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp TTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred ccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH
Confidence 167999999999999999999999999999999999997 89999999999999987798999999998754
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeC
Q 013007 198 ELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQ 277 (451)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~ 277 (451)
+. +...+++.++++.+.. ..+|++++||++| .|+++|+++|.+.+|.|.++.+.|++++|+++|.++
T Consensus 154 ~~-~~~~~~i~~~l~~~~~--~~~~~i~vSA~~g----------~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~ 220 (410)
T 1kk1_A 154 KA-LENYRQIKEFIEGTVA--ENAPIIPISALHG----------ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVN 220 (410)
T ss_dssp HH-HHHHHHHHHHHTTSTT--TTCCEEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCS
T ss_pred HH-HHHHHHHHHHHHhcCc--CCCeEEEeeCCCC----------CCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEecc
Confidence 32 2233466677765432 4689999999998 899999999999999888888999999999999875
Q ss_pred C--------CceEEEEEEEeeeeecCCEEEEecccC----C----CCceeEEEEEeecceeccEEecCCeEEEEec---c
Q 013007 278 G--------RGTVATGRVEQGTIKVGEEVEVLGLTQ----G----PSLKTTVTGVEMFKKILDRGEAGDNVGLLLR---G 338 (451)
Q Consensus 278 ~--------~G~v~~g~v~sG~l~~gd~v~i~p~~~----~----~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~---~ 338 (451)
+ +|+|++|+|.+|+|++||+|.++|... + .+..++|++|+.+++++++|.|||+|++.++ +
T Consensus 221 ~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v~~~~~~~~~ 300 (410)
T 1kk1_A 221 KPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPY 300 (410)
T ss_dssp CCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCGG
T ss_pred CCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEEEEEEecCcc
Confidence 4 788999999999999999999988431 0 0136899999999999999999999999986 5
Q ss_pred ccccCCCCCeEEecCCCc-ccccEEEEEEEEeecCCCCc----ccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCE
Q 013007 339 LKREDVQRGQVIAKPGSV-KTYKKFEAEIYVLTKDEGGR----HTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDN 413 (451)
Q Consensus 339 ~~~~~i~~G~vl~~~~~~-~~~~~f~a~i~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~ 413 (451)
++..++.+||+|++++.+ +.++.|+|++.||++..+.+ ..+|.+||++++|+++.++.|+|..+.. |
T Consensus 301 ~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~-------~- 372 (410)
T 1kk1_A 301 LTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGK-------D- 372 (410)
T ss_dssp GTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEET-------T-
T ss_pred cchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCCEEEEEEcCCEEeEEEEEecC-------C-
Confidence 666889999999998864 45789999999999854433 3689999999999999999999998843 3
Q ss_pred EEEEEEeCCeEeeecCCeEEEee----CCcEEEEEEEE
Q 013007 414 VNAAFELISPLPLQQGQRFALRE----GGRTVGAGVVS 447 (451)
Q Consensus 414 ~~v~~~~~~p~~~~~~~rfvlr~----~~~tig~G~I~ 447 (451)
.|+++|.+|+|+++|+||+||+ ++||+|+|.|+
T Consensus 373 -~~~l~~~~p~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 373 -EIEVKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIK 409 (410)
T ss_dssp -EEEEEEEEEEECCTTCEEEEEEEETTEEEEEEEEEEE
T ss_pred -EEEEEeCCcEEecCCCEEEEEEecCCCcEEEEEEEEc
Confidence 7888999999999999999998 68999999997
No 14
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=1.3e-60 Score=488.89 Aligned_cols=358 Identities=28% Similarity=0.483 Sum_probs=304.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
.++.++|+++||+|+|||||+++|++... ...+|..++|+++|+|++..+..+++++..++|||||||++|
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~---------~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~ 86 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIAS---------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL 86 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCc---------ccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH
Confidence 34578999999999999999999985421 123577888999999999988888888899999999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhc-CCCCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY-KFPGDE 220 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 220 (451)
.+++..+++.+|+++||+|+++|+.+|+.+|+.++..+++|. |+|+||+|+.+ ++.++.+.+++.++++.. ++ ..
T Consensus 87 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~-~~~~~~~~~~l~~~l~~~~~~--~~ 162 (482)
T 1wb1_A 87 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAG-TEEIKRTEMIMKSILQSTHNL--KN 162 (482)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSC-HHHHHHHHHHHHHHHHHSSSG--GG
T ss_pred HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCccc-chhHHHHHHHHHHHHhhhccc--cc
Confidence 999999999999999999999999999999999999999996 78999999986 445666777888888876 55 35
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCC--CcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEE
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP--ERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEV 298 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~--~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v 298 (451)
.|++++||++| .|+++|+++|.+.++.| .++.++||+++|+++|.++|.|+|++|+|.+|+|++||.+
T Consensus 163 ~~ii~vSA~~g----------~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v 232 (482)
T 1wb1_A 163 SSIIPISAKTG----------FGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDEL 232 (482)
T ss_dssp CCEEECCTTTC----------TTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEE
T ss_pred ceEEEEECcCC----------CCHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEE
Confidence 79999999998 89999999999877655 6777889999999999999999999999999999999999
Q ss_pred EEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEE-ecCCCcccccEEEEEEEEeecCCCCcc
Q 013007 299 EVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVI-AKPGSVKTYKKFEAEIYVLTKDEGGRH 377 (451)
Q Consensus 299 ~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl-~~~~~~~~~~~f~a~i~~l~~~~~~~~ 377 (451)
.+.|.+ ..++|++|+.+++++++|.|||+|++.+++++..++++||+| +.++++++++.|+|++.||++. +
T Consensus 233 ~~~p~~----~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~~~~~~~~~~~a~v~~l~~~----~ 304 (482)
T 1wb1_A 233 KVLPIN----MSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVAKIKISDIF----K 304 (482)
T ss_dssp CCTTTC----CCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTTCCCCCEEEEEECCCCCSSC----C
T ss_pred EECCCC----cEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEecCCCCCceeeEEEEEEEEeccC----C
Confidence 998854 468999999999999999999999999999988899999999 7777788899999999999863 3
Q ss_pred cccccCceeEEEEEeeeeeeeEEEeC-C----------ccccCCCCEEEEEEEeCCeEeeecCCeEEEee---C---CcE
Q 013007 378 TAFFSNYRPQIYLRTADVTGKVELLG-D----------VKMVMPGDNVNAAFELISPLPLQQGQRFALRE---G---GRT 440 (451)
Q Consensus 378 ~~i~~g~~~~~~~~~~~~~~~i~~~~-~----------~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~---~---~~t 440 (451)
.+|..||++++|+++.++.|++..+. . ++.|++||.+.|+|+|.+|+|+++++||+||+ + ++|
T Consensus 305 ~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~~t 384 (482)
T 1wb1_A 305 YNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTLRI 384 (482)
T ss_dssp SCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSCCC
T ss_pred cccCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCceE
Confidence 68999999999999999999998875 1 46799999999999999999999999999999 4 799
Q ss_pred EEEEEEEeec
Q 013007 441 VGAGVVSKVI 450 (451)
Q Consensus 441 ig~G~I~~~~ 450 (451)
+|+|+|+++.
T Consensus 385 vg~G~v~~~~ 394 (482)
T 1wb1_A 385 XGHGLIEEFK 394 (482)
T ss_dssp CCBCCEEECC
T ss_pred eeEEEEEecc
Confidence 9999999874
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=1e-57 Score=459.90 Aligned_cols=351 Identities=31% Similarity=0.479 Sum_probs=286.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee---------------C
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET---------------A 126 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~---------------~ 126 (451)
+++.++|+++||+|+|||||+++|++. ..+...+|+++|+|++..+..+.. .
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~ 71 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCP 71 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSC-------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCT
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCC-------------ccccCcccccCCcEEEeccccccccccccccccccccccc
Confidence 456789999999999999999999843 246677888899999776443221 1
Q ss_pred --------CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHHHHcCCCeEEEEEeeccCCChH
Q 013007 127 --------KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSLVCFLNKVDLVEDE 197 (451)
Q Consensus 127 --------~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~ 197 (451)
...++|||||||++|.+++.+++..+|++|||+|++++. .+||.+|+..+..++++++|+|+||+|+.+.+
T Consensus 72 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 72 NCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp TSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred ccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 167999999999999999999999999999999999997 89999999999999987788999999998743
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeC
Q 013007 198 ELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQ 277 (451)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~ 277 (451)
+. ....+++.++++.+.. ..+|++++||++| .|+++|+++|.+.++.|.++.+.|++++|+++|+++
T Consensus 152 ~~-~~~~~~i~~~l~~~~~--~~~~~i~vSA~~g----------~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~ 218 (408)
T 1s0u_A 152 QA-EENYEQIKEFVKGTIA--ENAPIIPISAHHE----------ANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDIN 218 (408)
T ss_dssp TT-TTHHHHHHHHHTTSTT--TTCCEEEC----------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCC
T ss_pred HH-HHHHHHHHHHHhhcCC--CCCeEEEeeCCCC----------CCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeec
Confidence 21 1122355666665432 4689999999999 899999999999999888888999999999999886
Q ss_pred C--------CceEEEEEEEeeeeecCCEEEEecccC----CC----CceeEEEEEeecceeccEEecCCeEEEEec---c
Q 013007 278 G--------RGTVATGRVEQGTIKVGEEVEVLGLTQ----GP----SLKTTVTGVEMFKKILDRGEAGDNVGLLLR---G 338 (451)
Q Consensus 278 ~--------~G~v~~g~v~sG~l~~gd~v~i~p~~~----~~----~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~---~ 338 (451)
+ +|+|++|+|.+|+|++||.|.++|... +. +..++|++|+.+++++++|.|||+|++.++ +
T Consensus 219 ~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~~~~~~~ 298 (408)
T 1s0u_A 219 KPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPY 298 (408)
T ss_dssp CSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEEEECSSCGG
T ss_pred CCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEEEEeccCcc
Confidence 4 788999999999999999999998431 00 136899999999999999999999999986 6
Q ss_pred ccccCCCCCeEEecCCCc-ccccEEEEEEEEeecCCCCc----ccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCE
Q 013007 339 LKREDVQRGQVIAKPGSV-KTYKKFEAEIYVLTKDEGGR----HTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDN 413 (451)
Q Consensus 339 ~~~~~i~~G~vl~~~~~~-~~~~~f~a~i~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~ 413 (451)
++..++++||+|++++.+ +.++.|+|++.||++..+++ ..+|.+||++++|+++.++.|+|..+.. |
T Consensus 299 ~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~-------~- 370 (408)
T 1s0u_A 299 LTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSARG-------D- 370 (408)
T ss_dssp GTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEET-------T-
T ss_pred cchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEEEEecC-------C-
Confidence 777899999999998864 45789999999999864443 4789999999999999999999998843 3
Q ss_pred EEEEEEeCCeEeeecCCeEEEee----CCcEEEEEEEE
Q 013007 414 VNAAFELISPLPLQQGQRFALRE----GGRTVGAGVVS 447 (451)
Q Consensus 414 ~~v~~~~~~p~~~~~~~rfvlr~----~~~tig~G~I~ 447 (451)
.|+++|.+|+|+++|+||+||+ ++||+|+|.|+
T Consensus 371 -~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 371 -IADIKLKLPICAEIGDRVAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp -EEEEEEEEEEECCTTCEEEEEEECSSSEEEEEEEEEC
T ss_pred -EEEEEECCcEEecCCCEEEEEEecCCCeEEEEEEEEc
Confidence 7888899999999999999998 68999999996
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=3.2e-55 Score=440.99 Aligned_cols=361 Identities=27% Similarity=0.373 Sum_probs=291.4
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhc--CccceeeeeccCCchhhhhcCceEEeeEEEe-----eeCCeeEEEEe
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEE--GKAKAIAFDEIDKAPEEKKRGITIATAHVEY-----ETAKRHYAHVD 134 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~--g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~-----~~~~~~i~iiD 134 (451)
.++.++|+++||+|+|||||+++|++..... +....... .....+..++.+.+.....+ ......++|||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD 81 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIG---VCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID 81 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEE---ECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcccccee---eccccccccceecccccccccccccccccceEEEEE
Confidence 5567899999999999999999998642221 11111110 01111122233322211101 11226799999
Q ss_pred cCChHHHHHHHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 135 CPGHADYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 135 tPG~~~~~~~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
||||++|.+++..++..+|++++|+|++++. ..|+++|+..+..++++++|+|+||+|+.+.++. +...+++.++++.
T Consensus 82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~-~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEA-LSQYRQIKQFTKG 160 (403)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH-HHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHH-HHHHHHHHHHHHh
Confidence 9999999999999999999999999999997 8999999999999998668999999999975443 3344567777766
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCC--------CceEEEE
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQG--------RGTVATG 285 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~--------~G~v~~g 285 (451)
++. ..+|++++||++| .|+++|+++|.+.++.|.++.++|++++|+++|.+++ +|+|++|
T Consensus 161 ~~~--~~~~ii~vSA~~g----------~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g 228 (403)
T 3sjy_A 161 TWA--ENVPIIPVSALHK----------INIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGG 228 (403)
T ss_dssp STT--TTCCEEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEE
T ss_pred hCC--CCCEEEEEECCCC----------cChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEE
Confidence 554 5689999999999 8999999999999998888889999999999998876 8999999
Q ss_pred EEEeeeeecCCEEEEecccCC--------CCceeEEEEEeecceeccEEecCCeEEEEec---cccccCCCCCeEEecCC
Q 013007 286 RVEQGTIKVGEEVEVLGLTQG--------PSLKTTVTGVEMFKKILDRGEAGDNVGLLLR---GLKREDVQRGQVIAKPG 354 (451)
Q Consensus 286 ~v~sG~l~~gd~v~i~p~~~~--------~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~ 354 (451)
+|.+|+|++||+|.++|.... .+...+|++|+.+++++++|.|||+|++.++ +++..++.+||+|++++
T Consensus 229 ~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~~~~ 308 (403)
T 3sjy_A 229 SIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLAD 308 (403)
T ss_dssp EEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEEETT
T ss_pred EEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCCEEEEEeccccccchhhhccccEEeCCC
Confidence 999999999999999985410 0125799999999999999999999999986 66778999999999998
Q ss_pred Cc-ccccEEEEEEEEeecCCCCc----ccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecC
Q 013007 355 SV-KTYKKFEAEIYVLTKDEGGR----HTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQG 429 (451)
Q Consensus 355 ~~-~~~~~f~a~i~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~ 429 (451)
.+ +.++.|+|++.||++..+++ ..+|.+|+++++|+++.++.|+|..+++ + .++++|.+|+|++.|
T Consensus 309 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~~-------~--~~~~~l~~p~~~~~g 379 (403)
T 3sjy_A 309 AEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKK-------D--EIEVELRRPVAVWSN 379 (403)
T ss_dssp CCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEECS-------S--EEEEEEEEEEECCSS
T ss_pred CCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEecC-------c--eEEEEeCCcEeeccC
Confidence 75 45789999999999865544 5789999999999999999999998843 2 688999999999999
Q ss_pred C-eEEE-eeC---CcEEEEEEEE
Q 013007 430 Q-RFAL-REG---GRTVGAGVVS 447 (451)
Q Consensus 430 ~-rfvl-r~~---~~tig~G~I~ 447 (451)
+ ||+| |+. +|++|+|.|+
T Consensus 380 ~~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 380 NIRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp SCEEEEEEEETTEEEEEEEEEEE
T ss_pred CEEEEEEEEeCCcEEEEEEEEEE
Confidence 9 9998 543 5999999985
No 17
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=3.2e-41 Score=349.38 Aligned_cols=274 Identities=23% Similarity=0.361 Sum_probs=202.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHH---HHhcCccce---eeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecC
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKV---LAEEGKAKA---IAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~---~~~~g~~~~---~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtP 136 (451)
...+||+|+||+|||||||+++|+.. ....|.... .....+|..+.|++||+|+..+...+.+.++.++|||||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 34789999999999999999999632 233333221 123468999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC--hHHHHHHHHHHHH------
Q 013007 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE--DEELLELVEMELR------ 208 (451)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~--~~~~~~~~~~~~~------ 208 (451)
||.||..++.++++.+|+||+||||.+|++.||+..|+.+...++|. |++|||||+.. ..+.++++++.+.
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~-i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~ 187 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPV-MTFVNKMDREALHPLDVMADIEQHLQIECAPM 187 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCE-EEEEECTTSCCCCHHHHHHHHHHHHTSEEEES
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCce-EEEEecccchhcchhHhhhhhhhhcCCceEeE
Confidence 99999999999999999999999999999999999999999999995 58999999976 2233333332210
Q ss_pred -------------------------------------------------------------HHHHhcC--------CCCC
Q 013007 209 -------------------------------------------------------------ELLSFYK--------FPGD 219 (451)
Q Consensus 209 -------------------------------------------------------------~~l~~~~--------~~~~ 219 (451)
.++...+ ..++
T Consensus 188 ~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~ 267 (548)
T 3vqt_A 188 TWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGE 267 (548)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTS
T ss_pred EeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCC
Confidence 0000000 1123
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc---------CCCCCeeEEEEEEEee---CCCceEEEEEE
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER---------QLDKPFLMPIEDVFSI---QGRGTVATGRV 287 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~---------~~~~p~~~~v~~~~~~---~~~G~v~~g~v 287 (451)
.+|+++.||+++ .|+++||+++.+++|+|.. +.++||...|++++.+ +++|+++++||
T Consensus 268 ~~PV~~gSA~~~----------~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV 337 (548)
T 3vqt_A 268 LTPVFFGSAINN----------FGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRI 337 (548)
T ss_dssp EEEEEECBGGGT----------BSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEE
T ss_pred cceeeecccccC----------cCHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEE
Confidence 579999999998 8999999999999998853 3468999999999866 78999999999
Q ss_pred EeeeeecCCEEEEecccCCCCceeEEEEEeec----ceeccEEecCCeEEEEeccccccCCCCCeEEecCCC
Q 013007 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS 355 (451)
Q Consensus 288 ~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 355 (451)
.||+|+.||.|++... ..+.+|..+... +.++++|.|||+|++. ...+++.||+||+.+.
T Consensus 338 ~sG~l~~g~~v~~~~~----~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~----gl~~~~~GDTl~~~~~ 401 (548)
T 3vqt_A 338 CSGTFTRGMRLKHHRT----GKDVTVANATIFMAQDRTGVEEAFPGDIIGIP----NHGTIKIGDTFTESKE 401 (548)
T ss_dssp EESCEETTCEEEETTT----TEEEECTTCEECCCSSCCSSCEECTTCEEEEE----CSSCCCTTCEEESSSS
T ss_pred ecceecCCCEEEeecc----ccccccchhhhhccccccccCEEecCCEEEec----CCccCccCCEecCCCC
Confidence 9999999999998653 245677777543 4789999999999885 4458999999998753
No 18
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=2.9e-38 Score=328.03 Aligned_cols=269 Identities=25% Similarity=0.336 Sum_probs=201.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-----CeeEEEEecCC
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-----KRHYAHVDCPG 137 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~i~iiDtPG 137 (451)
+..+||+++||+|||||||+++|+.......... ...+.+|..+.|+++|+|+......+.+. ...++||||||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE-KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCccccc-ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 3468999999999999999999986421110000 12345788999999999998765554432 36889999999
Q ss_pred hHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
|.+|..++.++++.+|++|+|+|+++|...|+.++|..+...++| +|+|+||+|+.+.. .+.+. .++.+.+++.
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~--~~~v~---~el~~~lg~~ 156 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSAD--VDRVK---KQIEEVLGLD 156 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHH---HHHHHTSCCC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccC--HHHHH---HHHHHhhCCC
Confidence 999999999999999999999999999999999999999999999 77999999998632 12222 2333444552
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCE
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 297 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~ 297 (451)
..+++++||++| .|+++|+++|.+.+|+|..+.+.||++.|++++.+++.|++++|+|.+|++++||.
T Consensus 157 --~~~vi~vSAktg----------~GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~ 224 (600)
T 2ywe_A 157 --PEEAILASAKEG----------IGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDK 224 (600)
T ss_dssp --GGGCEECBTTTT----------BSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCE
T ss_pred --cccEEEEEeecC----------CCchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCE
Confidence 246999999999 89999999999999999888899999999999999999999999999999999999
Q ss_pred EEEecccCCCCceeEEEEEee---cceeccEEecCCeEEEEeccc-cccCCCCCeEEecCCC
Q 013007 298 VEVLGLTQGPSLKTTVTGVEM---FKKILDRGEAGDNVGLLLRGL-KREDVQRGQVIAKPGS 355 (451)
Q Consensus 298 v~i~p~~~~~~~~~~V~~I~~---~~~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~ 355 (451)
|.+.+.+ ...+|++|.. .+.+++++.|||++.+. .|+ +..++++||+|+.++.
T Consensus 225 I~~~~~~----~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GDtl~~~~~ 281 (600)
T 2ywe_A 225 IMLMSTG----KEYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGDTITHAKN 281 (600)
T ss_dssp EEETTTT----EEEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTCEEEESSS
T ss_pred EEecccc----ceEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCCEEEeCCC
Confidence 9998743 3567777764 34789999999976654 565 3568999999997654
No 19
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3.8e-38 Score=337.08 Aligned_cols=273 Identities=26% Similarity=0.348 Sum_probs=197.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHH---HHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-------CeeEEE
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKV---LAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-------KRHYAH 132 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~---~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-------~~~i~i 132 (451)
...+||+|+||+|||||||+++|+.. ....|+.... ...+|..+.|++||+|+..+...+.+. ++.+||
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~-~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDG-AATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCC-CccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 45799999999999999999999743 3344443322 346899999999999999887776553 578999
Q ss_pred EecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh--HHHHHHHHHHH---
Q 013007 133 VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED--EELLELVEMEL--- 207 (451)
Q Consensus 133 iDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~--~~~~~~~~~~~--- 207 (451)
||||||.||..++.++++.+|+||+||||.+|++.||+..|+.+...++| .|++|||||+... ....+++.+.+
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp-~i~~iNKiDr~~a~~~~~~~ei~~~l~~~ 168 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVP-RIVYVNKMDRQGANFLRVVEQIKKRLGHT 168 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCC-EEEEEECSSSTTCCHHHHHHHHHHHHCSC
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEccccccCccHHHHHHHhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999 5589999998641 12222221100
Q ss_pred ---------------------------------------------------------------------HHHHHhcC---
Q 013007 208 ---------------------------------------------------------------------RELLSFYK--- 215 (451)
Q Consensus 208 ---------------------------------------------------------------------~~~l~~~~--- 215 (451)
..+++...
T Consensus 169 ~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~ 248 (709)
T 4fn5_A 169 PVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSE 248 (709)
T ss_dssp EEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCH
T ss_pred eeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccH
Confidence 01111100
Q ss_pred -----------CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCC--------------------cCCCC
Q 013007 216 -----------FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPE--------------------RQLDK 264 (451)
Q Consensus 216 -----------~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~--------------------~~~~~ 264 (451)
......|++..||.++ .|+..||+.+.+++|+|. .+.++
T Consensus 249 ~~~~~~l~~~~~~~~~~pv~~gsa~~~----------~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~ 318 (709)
T 4fn5_A 249 AEIKEGLRLRTLACEIVPAVCGSSFKN----------KGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNE 318 (709)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECBTTTT----------BTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTS
T ss_pred HHHHHHHHHhhhhceeeeeeeeecccC----------CchHHHHHHHHhhCCCCcccccccccCCccccccccccCCccC
Confidence 1123468888999887 899999999999999884 24578
Q ss_pred CeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEee----cceeccEEecCCeEEEEecccc
Q 013007 265 PFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEM----FKKILDRGEAGDNVGLLLRGLK 340 (451)
Q Consensus 265 p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~----~~~~v~~a~aG~~v~l~l~~~~ 340 (451)
||.+.|+++..++++|+++++||.||+|++||+|++...+ ...+|..|.. ...++++|.|||+|++. |+
T Consensus 319 pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~----~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--Gl- 391 (709)
T 4fn5_A 319 PFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKG----KKERVGRMVQMHANQREEIKEVRAGDIAALI--GM- 391 (709)
T ss_dssp CCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTC----CCCBCCCEECCCSSCCCEESEECTTCEEEEC--SC-
T ss_pred cceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCC----cEEeecceeEeecceeeEeeeecCCCeeeec--CC-
Confidence 9999999999999999999999999999999999865432 3456666643 25789999999999874 55
Q ss_pred ccCCCCCeEEecCCC
Q 013007 341 REDVQRGQVIAKPGS 355 (451)
Q Consensus 341 ~~~i~~G~vl~~~~~ 355 (451)
.++..||+|++.+.
T Consensus 392 -~~~~~gdTl~~~~~ 405 (709)
T 4fn5_A 392 -KDVTTGDTLCSIEK 405 (709)
T ss_dssp -SSCCTTCEEECSSS
T ss_pred -CcCccCCEecCCCc
Confidence 47899999998654
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=2.6e-37 Score=321.57 Aligned_cols=268 Identities=24% Similarity=0.329 Sum_probs=197.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-----CeeEEEEecCCh
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-----KRHYAHVDCPGH 138 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~i~iiDtPG~ 138 (451)
..+||+++||+|||||||+++|+.......... ...+.+|..+.|+++|+|+......+.+. ...++|||||||
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCccccc-ccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 468999999999999999999986421111101 12345788999999999998876666543 368999999999
Q ss_pred HHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 139 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.+|..++.++++.+|++|+|+|+++|...|+.++|..+...++| +|+|+||+|+.+.. .+.+.++ +.+.+++.
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~--~~~v~~e---i~~~lg~~- 154 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAAD--PERVAEE---IEDIVGID- 154 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHHHH---HHHHTCCC-
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCccccc--HHHHHHH---HHHHhCCC-
Confidence 99999999999999999999999999999999999999999999 77899999998632 1222223 33344552
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEE
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEV 298 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v 298 (451)
..+++++||++| .|+++|+++|.+.+|+|..+.++|+++.|++++.++++|++++|+|.+|+|++||.+
T Consensus 155 -~~~vi~vSAktg----------~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v 223 (599)
T 3cb4_D 155 -ATDAVRCSAKTG----------VGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV 223 (599)
T ss_dssp -CTTCEEECTTTC----------TTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEE
T ss_pred -cceEEEeecccC----------CCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEE
Confidence 246999999999 999999999999999998888999999999999999999999999999999999999
Q ss_pred EEecccCCCCceeEEEEEee---cceeccEEecCCeEEEEeccc-cccCCCCCeEEecCCC
Q 013007 299 EVLGLTQGPSLKTTVTGVEM---FKKILDRGEAGDNVGLLLRGL-KREDVQRGQVIAKPGS 355 (451)
Q Consensus 299 ~i~p~~~~~~~~~~V~~I~~---~~~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~ 355 (451)
.+.+.+ ...+|.+|.. ...+++++.|||++.+ +.++ +..++++||+|++++.
T Consensus 224 ~~~~~~----~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GDtl~~~~~ 279 (599)
T 3cb4_D 224 KVMSTG----QTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGDTLTLARN 279 (599)
T ss_dssp EETTTC----CEEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTCEEEESSS
T ss_pred Eecccc----ceeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCCEeeecCC
Confidence 998844 2456777754 3578999999996555 4555 3578999999997653
No 21
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=7e-37 Score=315.20 Aligned_cols=272 Identities=25% Similarity=0.341 Sum_probs=213.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHH---HhcCccce---eeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKA---IAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~---~~~g~~~~---~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (451)
..++|+++||+|+|||||+++|+... ...|.... ......|..+.|+++|+|+......+.+.+..++||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 46899999999999999999997321 11111110 1122457778899999999999899999999999999999
Q ss_pred hHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh--HHHHHHHHHHHH-------
Q 013007 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED--EELLELVEMELR------- 208 (451)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~--~~~~~~~~~~~~------- 208 (451)
|.+|...+.++++.+|++|+|+|++++...++..++..+...++| +++|+||+|+... .+.++.+++.+.
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~ 170 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTP-IMTFINKMDRDTRPSIELLDEIESILRIHCAPVT 170 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCC-EEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESE
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCCccccHHHHHHHHHHhhCCCceeee
Confidence 999999999999999999999999999999999999999999999 6789999999752 222222221110
Q ss_pred ------------------------------------------------------HHHH------hc--------CCCCCC
Q 013007 209 ------------------------------------------------------ELLS------FY--------KFPGDE 220 (451)
Q Consensus 209 ------------------------------------------------------~~l~------~~--------~~~~~~ 220 (451)
++++ .. -..+..
T Consensus 171 ~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 250 (528)
T 3tr5_A 171 WPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGEL 250 (528)
T ss_dssp EEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTSE
T ss_pred cccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCce
Confidence 0000 00 001233
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcC---------CCCCeeEEEEEEEe--eC-CCceEEEEEEE
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQ---------LDKPFLMPIEDVFS--IQ-GRGTVATGRVE 288 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~---------~~~p~~~~v~~~~~--~~-~~G~v~~g~v~ 288 (451)
+|++++||++| .|+++|+++|.+++|+|... .+.||...|+++.. ++ ++|+++++||.
T Consensus 251 ~PV~~gSA~~~----------~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~ 320 (528)
T 3tr5_A 251 TPIFFGSAINN----------FGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIA 320 (528)
T ss_dssp EEEEECBGGGT----------BSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEE
T ss_pred eEEEeccccCC----------ccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEe
Confidence 58999999999 99999999999999987642 25899999999874 67 89999999999
Q ss_pred eeeeecCCEEEEecccCCCCceeEEEEEee----cceeccEEecCCeEEEEeccccccCCCCCeEEecCC
Q 013007 289 QGTIKVGEEVEVLGLTQGPSLKTTVTGVEM----FKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354 (451)
Q Consensus 289 sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~----~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 354 (451)
||+|+.||.|++.+.+ ...+|.++.. .++++++|.|||++++. +..+++.||+||+.+
T Consensus 321 sG~l~~g~~v~~~~~~----~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~----~l~~~~~GDtl~~~~ 382 (528)
T 3tr5_A 321 SGQYQKGMKAYHVRLK----KEIQINNALTFMAGKRENAEEAWPGDIIGLH----NHGTIQIGDTFTQGE 382 (528)
T ss_dssp ESCEETTEEEEETTTT----EEEEESSCBCCBTTCSSCCSEECTTCEEEEE----ESSSCCTTCEEESSC
T ss_pred cCeEcCCCEEEecCCC----ceEEEeeeEEEeCCCeeECCEECCCCEEEEc----CCCCCccCCEEcCCC
Confidence 9999999999997643 4678888865 35789999999999884 445789999999754
No 22
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=7.6e-40 Score=345.71 Aligned_cols=268 Identities=26% Similarity=0.350 Sum_probs=216.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH---HhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~---~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
.+||+++||+|||||||+++|+... .+.|..... ...+|..+.|++||+|+..+...+.+.++.++|||||||.||
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g-~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKG-TTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCS-CCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccC-CcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 5799999999999999999997543 233333221 346899999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC--hHHHHHHHHH--------------
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE--DEELLELVEM-------------- 205 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~--~~~~~~~~~~-------------- 205 (451)
..++.++++.+|+||+||||.+|++.||+.+|+++...++|. |+++||||+.. .....+++++
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~-i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~ 159 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT-IFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVEL 159 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSC-EECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCS
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCe-EEEEeccccccCCHHHHHHHHHHHhCCCccccceeEe
Confidence 999999999999999999999999999999999999999996 47999999865 2222222211
Q ss_pred --------------------HHHHHHHhc----CC--------------CCCCCCeeeccccccccCCCcccchhhHHHH
Q 013007 206 --------------------ELRELLSFY----KF--------------PGDEIPIIRGSATSALQGKNEEIGKKAILKL 247 (451)
Q Consensus 206 --------------------~~~~~l~~~----~~--------------~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~L 247 (451)
...++++.+ .+ .....|+++.||+++ .|++.|
T Consensus 160 ~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~----------~Gv~~L 229 (638)
T 3j25_A 160 YPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSN----------IGIDNL 229 (638)
T ss_dssp CGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTC----------CSHHHH
T ss_pred eccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccC----------CCchhH
Confidence 111111111 00 113479999999998 899999
Q ss_pred HHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec----ceec
Q 013007 248 MDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKIL 323 (451)
Q Consensus 248 l~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~----~~~v 323 (451)
|+.+.+++|+|..+.+.||.+.|++++.++++|+++++||.||+|+.||.|++... .+.+|..+... ..++
T Consensus 230 Ld~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~-----~~~~v~~l~~~~g~~~~~v 304 (638)
T 3j25_A 230 IEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEK-----EKIKVTEMYTSINGELCKI 304 (638)
T ss_dssp HHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCC-----CCSSBCCCCSSCCCCBSCC
T ss_pred hhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccC-----cceeEEeeecccccccccc
Confidence 99999999999888899999999999999999999999999999999999977542 23566666432 4689
Q ss_pred cEEecCCeEEEEeccccccCCCCCeEEecCC
Q 013007 324 DRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354 (451)
Q Consensus 324 ~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 354 (451)
++|.|||++++. + .+++.|+++++..
T Consensus 305 ~~a~aGdIv~i~--g---~~~~~~~tl~d~~ 330 (638)
T 3j25_A 305 DRAYSGEIVILQ--N---EFLKLNSVLGDTK 330 (638)
T ss_dssp CTTBCCCCSCCC--S---SSCSSEECSSSSS
T ss_pred cccccceEEEEe--c---cccccCceecCCC
Confidence 999999998763 3 4677888888764
No 23
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=2.9e-36 Score=310.92 Aligned_cols=274 Identities=24% Similarity=0.350 Sum_probs=198.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHH---HhcCccce---eeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecC
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKA---IAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~---~~~g~~~~---~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtP 136 (451)
+..++|+++||+|+|||||+++|+... ...|.... .....+|..+.|+.+|+|+......+.+.+..++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 346899999999999999999998531 11111110 012346778889999999998888888899999999999
Q ss_pred ChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh--HHHHHHHHHHHH------
Q 013007 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED--EELLELVEMELR------ 208 (451)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~--~~~~~~~~~~~~------ 208 (451)
||.+|...+.++++.+|++|+|+|++++...|+.+++..+...++| +++++||+|+... .+..+.+++.+.
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~ 169 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDPMELLDEVENELKIGCAPI 169 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCHHHHHHHHHHHHCCEEEES
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccHHHHHHHHHHHhCCCccce
Confidence 9999999999999999999999999999999999999999989999 7789999999763 222332222110
Q ss_pred --------------------------------------------------------HHHHh------cC--------CCC
Q 013007 209 --------------------------------------------------------ELLSF------YK--------FPG 218 (451)
Q Consensus 209 --------------------------------------------------------~~l~~------~~--------~~~ 218 (451)
++++. .. ..+
T Consensus 170 ~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~ 249 (529)
T 2h5e_A 170 TWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAG 249 (529)
T ss_dssp EEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTT
T ss_pred ecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhC
Confidence 00000 00 012
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcC---------CCCCeeEEEEEEEe---eCCCceEEEEE
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQ---------LDKPFLMPIEDVFS---IQGRGTVATGR 286 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~---------~~~p~~~~v~~~~~---~~~~G~v~~g~ 286 (451)
..+|++++||+++ .|+++||++|.+++|+|... .++||.+.|+++.. .+++|++++||
T Consensus 250 ~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~R 319 (529)
T 2h5e_A 250 EITPVFFGTALGN----------FGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMR 319 (529)
T ss_dssp SEEEEEECBTTTT----------BSHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEE
T ss_pred ceeEEEeeecccC----------CCHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEE
Confidence 2468999999888 89999999999999987532 15789999988864 45789999999
Q ss_pred EEeeeeecCCEEEEecccCCCCceeEEEEEeec----ceeccEEecCCeEEEEeccccccCCCCCeEEecCCC
Q 013007 287 VEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS 355 (451)
Q Consensus 287 v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 355 (451)
|.||+|++||.|++.+.+ ...+|.+|+.. ++++++|.|||+|++. ...+++.||+|++++.
T Consensus 320 V~sG~l~~g~~v~~~~~~----~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~----~l~~~~~Gdtl~~~~~ 384 (529)
T 2h5e_A 320 VVSGKYEKGMKLRQVRTA----KDVVISDALTFMAGDRSHVEEAYPGDILGLH----NHGTIQIGDTFTQGEM 384 (529)
T ss_dssp EEESCEETTCEEEETTTT----EEEECSCEECCCC-----CCEECTTCEEEEC----CSSCCCTTCEEESSCC
T ss_pred EecCeEcCCCEEEEeeCC----CEEEeceeeEEeCCCceEcceECCCCEEEEe----ccCCCccCCEeecCCc
Confidence 999999999999998743 46889999764 5789999999999884 4467899999998653
No 24
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=3.2e-35 Score=313.18 Aligned_cols=270 Identities=26% Similarity=0.369 Sum_probs=214.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHH---HhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC-------eeEEE
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-------RHYAH 132 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~---~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-------~~i~i 132 (451)
+..+||+++||+|+|||||+++|+... ...|.... ....+|..+.|+++|+|+......+.+.+ ..++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~-g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHD-GAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCC-CceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 346799999999999999999997532 12222111 12357888999999999998877777666 88999
Q ss_pred EecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHH-
Q 013007 133 VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELL- 211 (451)
Q Consensus 133 iDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l- 211 (451)
||||||.+|..++.++++.+|++|+|+|++++...|+.++|..+...++| +++|+||+|+.... ++.+.+++++.+
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip-~ilviNKiD~~~~~--~~~~~~~l~~~l~ 163 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVP-RIAFVNKMDRMGAN--FLKVVNQIKTRLG 163 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEeCCCccccc--HHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999 56899999987521 111112222111
Q ss_pred -----------------------------------------------------------------------Hhc----C-
Q 013007 212 -----------------------------------------------------------------------SFY----K- 215 (451)
Q Consensus 212 -----------------------------------------------------------------------~~~----~- 215 (451)
+.+ .
T Consensus 164 ~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l 243 (704)
T 2rdo_7 164 ANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEEL 243 (704)
T ss_pred CCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCC
Confidence 111 0
Q ss_pred -------------CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc--------------------CC
Q 013007 216 -------------FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER--------------------QL 262 (451)
Q Consensus 216 -------------~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~--------------------~~ 262 (451)
..+..+|++++||+++ .|++.||+.+.+++|+|.. +.
T Consensus 244 ~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~ 313 (704)
T 2rdo_7 244 TEAEIKGALRQRVLNNEIILVTCGSAFKN----------KGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASD 313 (704)
T ss_pred CHHHHHHHHHHHHHhCCeeEEEEeecccC----------ccHHHHHHHHHHHCCChhhcccccccCCcccccccccccCC
Confidence 0112368999999988 8999999999999998753 25
Q ss_pred CCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec----ceeccEEecCCeEEEEecc
Q 013007 263 DKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRG 338 (451)
Q Consensus 263 ~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~ 338 (451)
++||.+.|++++.++++|++++|||.||+|+.||+|++.+.+ .+.+|.+|... .+++++|.|||++++. |
T Consensus 314 ~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~----~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~--g 387 (704)
T 2rdo_7 314 DEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKA----ARERFGRIVQMHANKREEIKEVRAGDIAAAI--G 387 (704)
T ss_pred CCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCC----cEEEeceEEEEeCCCceEcceeCCCCEEEEe--C
Confidence 789999999999999999999999999999999999986632 46788888643 5789999999999985 4
Q ss_pred ccccCCCCCeEEecCC
Q 013007 339 LKREDVQRGQVIAKPG 354 (451)
Q Consensus 339 ~~~~~i~~G~vl~~~~ 354 (451)
+ .++++||+|++++
T Consensus 388 l--~~~~~GdTl~~~~ 401 (704)
T 2rdo_7 388 L--KDVTTGDTLCDPD 401 (704)
T ss_pred c--ccCccCCEEeCCC
Confidence 4 4789999999765
No 25
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=268.00 Aligned_cols=179 Identities=23% Similarity=0.410 Sum_probs=162.2
Q ss_pred CCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccc
Q 013007 262 LDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKR 341 (451)
Q Consensus 262 ~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~ 341 (451)
.++||+|+|+++|+ |.|+|++|+|++|++++||+|.++|.+ ..++|++|+.+++++++|.|||+|+++|+|++.
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~----~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~ 76 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK----HNVEVLGILSDDVETDTVAPGENLKIRLKGIEE 76 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTT----EEEEEEEECSSSSCBSEECTTSEEEEEEEESSS
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCC----CEEEEEEEEECCEEeEEECCCCEEEEEEcCCCH
Confidence 57899999999998 799999999999999999999999854 579999999999999999999999999999999
Q ss_pred cCCCCCeEEecCCCc-ccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEeC-------------Cccc
Q 013007 342 EDVQRGQVIAKPGSV-KTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLG-------------DVKM 407 (451)
Q Consensus 342 ~~i~~G~vl~~~~~~-~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-------------~~~~ 407 (451)
.++++||+|++++.+ +.+++|+|++.||+++ .+|.+||++++|+++.++.|+|..+. ++++
T Consensus 77 ~di~rG~vl~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~ 151 (204)
T 3e1y_E 77 EEILPGFILCDPNNLCHSGRTFDAQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRF 151 (204)
T ss_dssp SCCCTTCEEBCSSSCCCCCSEEEEEEECCSCC-----SCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSC
T ss_pred HHCccceEEECCCCCCchhEEEEEEEEEeCCC-----CccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcC
Confidence 999999999998864 6789999999999974 57999999999999999999998651 3478
Q ss_pred cCCCCEEEEEEEeCCeEeeecC------CeEEEeeCCcEEEEEEEEeecC
Q 013007 408 VMPGDNVNAAFELISPLPLQQG------QRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 408 l~~g~~~~v~~~~~~p~~~~~~------~rfvlr~~~~tig~G~I~~~~~ 451 (451)
|++||.+.|+|++.+|+|+++| +||+|||+++|+|+|+|+++++
T Consensus 152 l~~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~ 201 (204)
T 3e1y_E 152 VKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVP 201 (204)
T ss_dssp CCTTCEEEEEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC
T ss_pred cCCCCEEEEEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEec
Confidence 9999999999999999999997 8999999999999999999863
No 26
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=2.8e-34 Score=305.55 Aligned_cols=271 Identities=27% Similarity=0.362 Sum_probs=199.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHH---hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (451)
+..++|+++||+|+|||||+++|+.... ..|.... ....+|..+.|+++|+|+......+.+.+..++|||||||.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~-~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHE-GAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecC-CceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 4568999999999999999999985321 1121111 12356888899999999998888888889999999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHH-------
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS------- 212 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~------- 212 (451)
+|...+.++++.+|++|+|+|++++...++.++|..+...++| +++|+||+|+...+ .+.+.+++.+.+.
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~--~~~~~~~l~~~l~~~~~~~~ 165 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTGAD--LWLVIRTMQERLGARPVVMQ 165 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--HHHHHHHHHHTTCCCEEECE
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCcccCC--HHHHHHHHHHHhCCCcccee
Confidence 9999999999999999999999999999999999999999999 66899999997521 1111112221111
Q ss_pred ----------------------------------------------------------------hc----C---------
Q 013007 213 ----------------------------------------------------------------FY----K--------- 215 (451)
Q Consensus 213 ----------------------------------------------------------------~~----~--------- 215 (451)
.+ .
T Consensus 166 ~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~ 245 (691)
T 1dar_A 166 LPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245 (691)
T ss_dssp EEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred ccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHH
Confidence 00 0
Q ss_pred -----CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc------------------CCCCCeeEEEEE
Q 013007 216 -----FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER------------------QLDKPFLMPIED 272 (451)
Q Consensus 216 -----~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~------------------~~~~p~~~~v~~ 272 (451)
..+..+|++++||+++ .|+++|++.+.+++|+|.. +.++||.+.|++
T Consensus 246 ~~~~~~~~~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk 315 (691)
T 1dar_A 246 IRKGTIDLKITPVFLGSALKN----------KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFK 315 (691)
T ss_dssp HHHHHHTTSCEEEEECBGGGT----------BSHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEE
T ss_pred HHHHHHhCcEeEEEEeecccC----------cCHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEE
Confidence 0112368999999988 8999999999999998864 257899999999
Q ss_pred EEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEee----cceeccEEecCCeEEEEeccccccCCCCCe
Q 013007 273 VFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEM----FKKILDRGEAGDNVGLLLRGLKREDVQRGQ 348 (451)
Q Consensus 273 ~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~----~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 348 (451)
++.++++|+++++||.||+|+.||+|++... ....+|..|.. ...++++|.|||++++. |+ .+++.||
T Consensus 316 ~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~----~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~Gd 387 (691)
T 1dar_A 316 IMADPYVGRLTFIRVYSGTLTSGSYVYNTTK----GRKERVARLLRMHANHREEVEELKAGDLGAVV--GL--KETITGD 387 (691)
T ss_dssp EEEETTTEEEEEEEEEESEEESSCEEEETTT----TEEEECCEEEEECSSCEEEESEEETTCEEEEE--CC--SSCCTTC
T ss_pred EEEcCCCCcEEEEEEeeeeEecCCEEEecCC----CcEEEEceEEEEeCCCceEcceecCCCEEEEe--Cc--ccCccCC
Confidence 9999999999999999999999999998653 24567777754 35789999999999986 54 4678999
Q ss_pred EEecCCC
Q 013007 349 VIAKPGS 355 (451)
Q Consensus 349 vl~~~~~ 355 (451)
+|++++.
T Consensus 388 tl~~~~~ 394 (691)
T 1dar_A 388 TLVGEDA 394 (691)
T ss_dssp EEEETTC
T ss_pred EEecCCC
Confidence 9997653
No 27
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.4e-34 Score=302.41 Aligned_cols=270 Identities=26% Similarity=0.371 Sum_probs=200.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHh---cCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAE---EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (451)
+..++|+++||+|+|||||+++|+..... .|.... ....+|..+.|+++|+|+......+.+.+..++|||||||.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~-~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHE-GASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccC-CceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 34689999999999999999999854211 111110 12346788889999999998888888889999999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh------
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF------ 213 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~------ 213 (451)
+|...+.++++.+|++|+|+|++++...++...|..+...++| +++|+||+|+...+ .+.+.+++++.+..
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~--~~~~~~~l~~~l~~~~~~~~ 163 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVP-RIVFVNKMDKLGAN--FEYSVSTLHDRLQANAAPIQ 163 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--HHHHHHHHHHHHCCCEEESE
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCC-EEEEEECCCccccc--hHHHHHHHHHHhCCCceeEE
Confidence 9999999999999999999999999999999999999999999 66899999998631 11122222222211
Q ss_pred -----------------------------------------------------------------c----C---------
Q 013007 214 -----------------------------------------------------------------Y----K--------- 215 (451)
Q Consensus 214 -----------------------------------------------------------------~----~--------- 215 (451)
+ .
T Consensus 164 ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~ 243 (693)
T 2xex_A 164 LPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEA 243 (693)
T ss_dssp EEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHH
T ss_pred eecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHH
Confidence 0 0
Q ss_pred -----CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc--------------------CCCCCeeEEE
Q 013007 216 -----FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER--------------------QLDKPFLMPI 270 (451)
Q Consensus 216 -----~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~--------------------~~~~p~~~~v 270 (451)
..+..+|++++||+++ .|++.|++.+.+++|+|.. +.++||.+.|
T Consensus 244 l~~~~~~~~~~Pv~~gSA~~~----------~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~V 313 (693)
T 2xex_A 244 IRQATTNVEFYPVLCGTAFKN----------KGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALA 313 (693)
T ss_dssp HHHHHHTTSCEEEEECBTTTT----------BSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEE
T ss_pred HHHHHHhCCeeeEEEeecccC----------cCHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEE
Confidence 0011268999999988 8999999999999998854 2578999999
Q ss_pred EEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec----ceeccEEecCCeEEEEeccccccCCCC
Q 013007 271 EDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQR 346 (451)
Q Consensus 271 ~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~ 346 (451)
++++.++++|+++++||.||+|+.||+|++... ..+.+|..|... ..++++|.|||++++. |+ .+++.
T Consensus 314 fK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~----~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~ 385 (693)
T 2xex_A 314 FKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTK----GKRERVGRLLQMHANSRQEIDTVYSGDIAAAV--GL--KDTGT 385 (693)
T ss_dssp EEEEEETTTEEEEEEEEEESEEETTEEEEETTT----TEEEEECCEEEECSSCEEECSEEETTCEEEEE--SC--SSCCT
T ss_pred EEeeecCCCceEEEEEEEeeeEecCCEEEecCC----CceEEeceEEEEeCCCceEccccCcCCEEEEe--Cc--ccCcc
Confidence 999999999999999999999999999997542 246788888543 4789999999999986 44 47889
Q ss_pred CeEEecCC
Q 013007 347 GQVIAKPG 354 (451)
Q Consensus 347 G~vl~~~~ 354 (451)
||+|++++
T Consensus 386 GdTl~~~~ 393 (693)
T 2xex_A 386 GDTLCGEK 393 (693)
T ss_dssp TCEEEETT
T ss_pred CCEEecCC
Confidence 99999765
No 28
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=5.1e-34 Score=302.57 Aligned_cols=271 Identities=24% Similarity=0.275 Sum_probs=215.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHH---hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (451)
....+|+++||+|+|||||+++|++... ..|.. .......|..+.|+.+|+|+......+.+.+..++|||||||.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 3467999999999999999999986533 22322 1112346778889999999988888888888999999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC-hHHHHHHHHHHHH----------
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLELVEMELR---------- 208 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~~~~~~~~~~~~~---------- 208 (451)
+|...+..+++.+|++++|+|+.+++..|+.+++..+...++| +++|+||+|+.. ..+..+.+.+.+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~~~~~~~~~~l~~~l~~~~~~~~Pi~ 164 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP-RMVVVTKLDKGGDYYALLEDLRSTLGPILPIDLPLY 164 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECGGGCCCHHHHHHHHHHHHCSEEECEEEEE
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCC-EEEEecCCchhhhHHHHHHHHHHHhCCcceEEeeec
Confidence 9999999999999999999999999999999999999999999 568999999861 1222222221110
Q ss_pred ---------------------------------------------------------HHHHhcC--------------CC
Q 013007 209 ---------------------------------------------------------ELLSFYK--------------FP 217 (451)
Q Consensus 209 ---------------------------------------------------------~~l~~~~--------------~~ 217 (451)
.+++... ..
T Consensus 165 ~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~ 244 (665)
T 2dy1_A 165 EGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRR 244 (665)
T ss_dssp ETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred CCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence 0111000 00
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcC-CCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQ-LDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~-~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd 296 (451)
+..+|++++||+++ .|+++|+++|.+++|+|... .++||.+.|++++.++++|++++|||.+|+|++||
T Consensus 245 ~~~~pv~~~SA~~~----------~Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~ 314 (665)
T 2dy1_A 245 GLLYPVALASGERE----------IGVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGD 314 (665)
T ss_dssp TSCEEEEECBTTTT----------BSHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTE
T ss_pred CCeeEEEEeecccC----------cCHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCC
Confidence 12368999999998 89999999999999987654 78999999999999999999999999999999999
Q ss_pred EEEEecccCCCCceeEEEEEee----cceeccEEecCCeEEEEeccccccCCCCCeEEecCCC
Q 013007 297 EVEVLGLTQGPSLKTTVTGVEM----FKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS 355 (451)
Q Consensus 297 ~v~i~p~~~~~~~~~~V~~I~~----~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 355 (451)
+|++.+ ...+|.+|.. ..+++++|.|||++++. ++ .++++||+|++++.
T Consensus 315 ~v~~~~------~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~--gl--~~~~~Gdtl~~~~~ 367 (665)
T 2dy1_A 315 SLQSEA------GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVP--KA--EGLHRGMVLWQGEK 367 (665)
T ss_dssp EEBCTT------SCEEESSEEEEETTEEEEESCEETTCEEEES--SC--TTCCTTCEEESSSC
T ss_pred EEEcCC------CeEEEeEEEEEeCCCeeECCEECCCCEEEEe--CC--ccCccCCEEecCCC
Confidence 998754 2478888864 35789999999999884 44 47899999997653
No 29
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=1.4e-33 Score=293.85 Aligned_cols=258 Identities=24% Similarity=0.282 Sum_probs=192.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee------------------eC
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE------------------TA 126 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~------------------~~ 126 (451)
..+|+++||+|||||||+++|++....... .+|+|.+.....+. ..
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e----------------~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~ 68 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASRE----------------AGGITQHIGATEIPMDVIEGICGDFLKKFSIRET 68 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC--------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCcccc----------------CCceecccCeEEEeechhhhhccccccccccccc
Confidence 469999999999999999999865322111 02333332221111 11
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh----------
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED---------- 196 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~---------- 196 (451)
...++|||||||++|...+.++++.+|++|+|+|+++|+++||.+++..+...++| +++|+||||+.+.
T Consensus 69 ~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp CCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCCCCTTCCHH
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEecccccccccccccCCchH
Confidence 22599999999999999888889999999999999999999999999999999999 7799999999641
Q ss_pred -------HHH---HHHHHHHHHHHHHhcCCC----------CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 197 -------EEL---LELVEMELRELLSFYKFP----------GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 197 -------~~~---~~~~~~~~~~~l~~~~~~----------~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++. +.+...++.+.+...++. ...+|++++||++| .|+++|+++|..++|
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG----------~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG----------EGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC----------CCchhHHHHHHhhcc
Confidence 111 111122333344444442 23569999999999 999999999987665
Q ss_pred CC-----CcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec------------
Q 013007 257 DP-----ERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF------------ 319 (451)
Q Consensus 257 ~~-----~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~------------ 319 (451)
.+ ..+.+.|+++.|++++.++|.|++++|+|.+|+|++||.|.+++.+. ...++|++|...
T Consensus 218 ~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~--~~~~rV~~i~~~~~~~elr~~~~~ 295 (594)
T 1g7s_A 218 QYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKD--VISTRIRSLLKPRPLEEMRESRKK 295 (594)
T ss_dssp HHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSS--EEEEECCEEEEECCCC----CCCS
T ss_pred ccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCC--ceeEEEeEEEeccccchhhhccCC
Confidence 22 12457899999999999999999999999999999999999987442 245699999642
Q ss_pred ceeccEEe--cCCeEEEEeccccccCCCCCeEEecCCC
Q 013007 320 KKILDRGE--AGDNVGLLLRGLKREDVQRGQVIAKPGS 355 (451)
Q Consensus 320 ~~~v~~a~--aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 355 (451)
..++++|. +|+.+++ . +..++..||+|+..+.
T Consensus 296 ~~~v~ea~~~aG~~v~~--~--~l~~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 296 FQKVDEVVAAAGIKIVA--P--GIDDVMAGSPLRVVTD 329 (594)
T ss_dssp EEECSEEESSEEEEEEC--S--SCTTBCTTCEEEECSS
T ss_pred ceEccEEcCCCCcEEEE--c--ccCCCCCCCEEEecCC
Confidence 46788998 7766654 3 3456789999987653
No 30
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=1.1e-34 Score=295.19 Aligned_cols=248 Identities=30% Similarity=0.332 Sum_probs=197.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
.++|+++||+|||||||+++|.+.....+ ..+|+|++.....+++++..++|||||||++|..+
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~----------------e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~ 67 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASG----------------EAGGITQHIGAYHVETENGMITFLDTPGHAAFTSM 67 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBT----------------TBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccc----------------cCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHH
Confidence 46999999999999999999986532211 12578877766667777888999999999999999
Q ss_pred HHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC----CCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP----GDE 220 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 220 (451)
+.+++..+|+++||+|+++|.++||.+++..+...++| +|+++||+|+.+... +.+. ..+...++. +..
T Consensus 68 ~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~--~~v~----~~l~~~~~~~~~~~~~ 140 (501)
T 1zo1_I 68 RARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADP--DRVK----NELSQYGILPEEWGGE 140 (501)
T ss_dssp BCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCC--CCTT----CCCCCCCCCTTCCSSS
T ss_pred HHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEeccccccCH--HHHH----HHHHHhhhhHHHhCCC
Confidence 99999999999999999999999999999999999999 789999999975210 0011 111111111 124
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhC--CCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEE
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI--PDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEV 298 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l--p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v 298 (451)
+|++++||++| .|+++|+++|.... ..+..+.+.|+.+.|++++.++|+|++++|+|.+|++++||.+
T Consensus 141 ~~~v~vSAktG----------~gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v 210 (501)
T 1zo1_I 141 SQFVHVSAKAG----------TGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIV 210 (501)
T ss_dssp CEEEECCTTTC----------TTCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEE
T ss_pred ccEEEEeeeec----------cCcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEE
Confidence 79999999999 88999999987542 2334456788999999999999999999999999999999999
Q ss_pred EEecccCCCCceeEEEEEee-cceeccEEecCCeEEEEeccccccCCCCCeEEecCC
Q 013007 299 EVLGLTQGPSLKTTVTGVEM-FKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354 (451)
Q Consensus 299 ~i~p~~~~~~~~~~V~~I~~-~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 354 (451)
.+++ ...+|++|+. ++.++++|.||+.|.+. |++ .....||+++...
T Consensus 211 ~~g~------~~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~-~~~~~Gd~~~~~~ 258 (501)
T 1zo1_I 211 LCGF------EYGRVRAMRNELGQEVLEAGPSIPVEIL--GLS-GVPAAGDEVTVVR 258 (501)
T ss_dssp EEEB------SSCEEEEECCTTTTSEEEECCSSCSSSE--EEC-SCCCTTEEEEEEC
T ss_pred EEcc------ceeEEEEEEecCCCcCcEeccCCcEEEe--CCC-CCCCCCCEEEecC
Confidence 8855 2479999985 56899999999998765 444 2247899998543
No 31
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=8.6e-36 Score=305.76 Aligned_cols=254 Identities=26% Similarity=0.309 Sum_probs=198.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee-CCeeEEEEecCChHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-AKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~iiDtPG~~~~~~ 143 (451)
..+|+++||+|||||||+++|++...... ..+|+|.+.....+.. .+..++|||||||++|..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~----------------~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~ 67 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM----------------EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA 67 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHS----------------SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc----------------cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH
Confidence 35899999999999999999986643222 2336666665544544 456899999999999999
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPI 223 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv 223 (451)
.+.+++..+|+++||+|++++..+|+.+++..+...++| +|+|+||+|+.+... +.+.+++.++-......+..+|+
T Consensus 68 ~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~--~~v~~~l~~~~~~~e~~~~~~~i 144 (537)
T 3izy_P 68 MRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKAEADP--EKVKKELLAYDVVCEDYGGDVQA 144 (537)
T ss_dssp SBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSC--CSSSSHHHHTTSCCCCSSSSEEE
T ss_pred HHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEecccccccch--HHHHHHHHhhhhhHHhcCCCceE
Confidence 999999999999999999999999999999999999999 789999999975211 00111111110000011124789
Q ss_pred eeccccccccCCCcccchhhHHHHHHHHHhhCC--CCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEe
Q 013007 224 IRGSATSALQGKNEEIGKKAILKLMDAVDEYIP--DPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVL 301 (451)
Q Consensus 224 i~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp--~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~ 301 (451)
+++||++| .|+++|++.|...++ .+..+.+.|++++|++++.++++|++++|+|.+|+|++||.+..+
T Consensus 145 v~vSAktG----------~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g 214 (537)
T 3izy_P 145 VHVSALTG----------ENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAG 214 (537)
T ss_dssp CCCCSSSS----------CSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCS
T ss_pred EEEECCCC----------CCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEeC
Confidence 99999999 889999999877644 344567899999999999999999999999999999999987432
Q ss_pred cccCCCCceeEEEEEeecc-eeccEEecCCeEEEEeccccccCCCCCeEEecCCCc
Q 013007 302 GLTQGPSLKTTVTGVEMFK-KILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSV 356 (451)
Q Consensus 302 p~~~~~~~~~~V~~I~~~~-~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 356 (451)
....+|++|+.++ .++++|.||+.|++. |++ ....+||+|+.++..
T Consensus 215 ------~~~~kVr~i~~~~g~~v~~A~~G~~V~i~--g~~-~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 215 ------KSWAKVRLMFDENGRAVNEAYPSMPVGII--GWR-DLPSAGDEILEVESE 261 (537)
T ss_dssp ------SCCEEEEEEEECCCCCSCCSCCSTTCCCC--SSE-EEEEEESSCCSCCSS
T ss_pred ------CceEEEEEEEcCCCCCCcEEcCCCEEEEE--CCC-CCCCCCCEEEecCCh
Confidence 2358999999875 899999999999874 665 345899999977543
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.97 E-value=5.3e-31 Score=285.80 Aligned_cols=288 Identities=24% Similarity=0.330 Sum_probs=197.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC---------------
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--------------- 126 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--------------- 126 (451)
.+..+||+++||+|+|||||+++|+................+|..+.|+++|+|+......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 44578999999999999999999986522111111111235688889999999998765544443
Q ss_pred -CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC------hHHH
Q 013007 127 -KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE------DEEL 199 (451)
Q Consensus 127 -~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~------~~~~ 199 (451)
+..++|||||||.+|..++.++++.+|++|+|+|+.++...|+..+|..+...++| +++|+||+|+.. +++.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~ilviNK~D~~~~e~~~~~~e~ 174 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIK-PVVVINKVDRALLELQVSKEDL 174 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCE-EEEEEECHHHHHHTSCCCHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-eEEEEECCCcchhhhccCHHHH
Confidence 57899999999999999999999999999999999999999999999998888999 668999999862 2332
Q ss_pred ---HHHHHHHHHHHHHhc-----C---CCCCCCCeeeccccccccC--------------------------CC------
Q 013007 200 ---LELVEMELRELLSFY-----K---FPGDEIPIIRGSATSALQG--------------------------KN------ 236 (451)
Q Consensus 200 ---~~~~~~~~~~~l~~~-----~---~~~~~~pvi~~Sa~~g~~~--------------------------~~------ 236 (451)
++.+.+++...+..+ + +.+...++...|+++||.. +.
T Consensus 175 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~ 254 (842)
T 1n0u_A 175 YQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKT 254 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTT
T ss_pred HHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCC
Confidence 233334444444321 1 3222345777888665320 00
Q ss_pred --------cccc-----------------------------------hhh--------------------------HHHH
Q 013007 237 --------EEIG-----------------------------------KKA--------------------------ILKL 247 (451)
Q Consensus 237 --------~~~~-----------------------------------~~~--------------------------i~~L 247 (451)
+... ..| ++.|
T Consensus 255 ~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~L 334 (842)
T 1n0u_A 255 KKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADAL 334 (842)
T ss_dssp TEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHH
T ss_pred CeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHH
Confidence 0000 000 3789
Q ss_pred HHHHHhhCCCCCc-------------------------CCCCCeeEEEEEEEeeCCCce-EEEEEEEeeeeecCCEEEEe
Q 013007 248 MDAVDEYIPDPER-------------------------QLDKPFLMPIEDVFSIQGRGT-VATGRVEQGTIKVGEEVEVL 301 (451)
Q Consensus 248 l~~l~~~lp~~~~-------------------------~~~~p~~~~v~~~~~~~~~G~-v~~g~v~sG~l~~gd~v~i~ 301 (451)
|+.+.+++|+|.. +.++||.+.|++++.++++|+ ++++||.||+|+.||.|++.
T Consensus 335 Ld~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~ 414 (842)
T 1n0u_A 335 LEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQ 414 (842)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEE
T ss_pred HHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEec
Confidence 9999999998851 457899999999999999996 99999999999999999886
Q ss_pred ccc--CCCCc---eeEEEEEeec----ceeccEEecCCeEEEEeccccccCCCCC-eEEecCC
Q 013007 302 GLT--QGPSL---KTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQRG-QVIAKPG 354 (451)
Q Consensus 302 p~~--~~~~~---~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G-~vl~~~~ 354 (451)
..+ .+... ..+|..|... ..++++|.|||+|++. |++ +...| ++||+.+
T Consensus 415 ~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~--gl~--~~~~~t~Tl~~~~ 473 (842)
T 1n0u_A 415 GPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLV--GID--QFLLKTGTLTTSE 473 (842)
T ss_dssp CTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEE--SCT--TTCCSSEEEESCT
T ss_pred cccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEE--ccc--cceecceeecCCC
Confidence 532 11122 4788888654 4789999999999885 554 44333 5998754
No 33
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=9.1e-21 Score=182.28 Aligned_cols=158 Identities=19% Similarity=0.194 Sum_probs=114.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH---
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (451)
...+|+++|++|+|||||+|+|++... ... ....+.|.+.....+...+.+++||||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~------~iv---------s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKV------API---------SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCC------SCC---------CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCce------eee---------cCCCCceeEEEEEEEEeCCcEEEEecCccccchhh
Confidence 456899999999999999999985311 110 01112333322223445678999999999766
Q ss_pred -----HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 141 -----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 141 -----~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
|......++..+|++++|+|++++...++...+..+... ++| +++|+||+|+.+.... +.+.+ +.
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~---~~~~~----~~ 142 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDAAKYPEE---AMKAY----HE 142 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGGCSSHHH---HHHHH----HH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECcccCCchHH---HHHHH----HH
Confidence 677777889999999999999998877777777777766 788 6789999999864331 12222 22
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
+ . ...+++++||++| .|+++|++.|.+.+|.
T Consensus 143 ~-~--~~~~~~~iSA~~g----------~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 143 L-L--PEAEPRMLSALDE----------RQVAELKADLLALMPE 173 (301)
T ss_dssp T-S--TTSEEEECCTTCH----------HHHHHHHHHHHTTCCB
T ss_pred h-c--CcCcEEEEeCCCC----------CCHHHHHHHHHHhccc
Confidence 2 1 2357999999998 9999999999987763
No 34
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.85 E-value=5.7e-21 Score=175.56 Aligned_cols=169 Identities=18% Similarity=0.215 Sum_probs=118.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee-eCCeeEEEEecCCh----
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-TAKRHYAHVDCPGH---- 138 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~iiDtPG~---- 138 (451)
..++|+++|++|+|||||+++|++... ........|.|.......+. ..+..+.||||||+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~--------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 93 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKR--------------LAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAE 93 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSS--------------SSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc--------------ceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCccc
Confidence 457999999999999999999985310 00111223555555555454 45678999999995
Q ss_pred ------HHH---HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHH
Q 013007 139 ------ADY---VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRE 209 (451)
Q Consensus 139 ------~~~---~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~ 209 (451)
+.| ....+.....+|++++|+|++++......+.+..+...++| +++|+||+|+.+..+..+ ..+++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~Dl~~~~~~~~-~~~~~~~ 171 (223)
T 4dhe_A 94 VPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTKCDKLTRQESIN-ALRATQK 171 (223)
T ss_dssp CCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEECGGGSCHHHHHH-HHHHHHH
T ss_pred CChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEeccccCChhhHHH-HHHHHHH
Confidence 333 33444445558999999999998888888888888888888 779999999987544322 2233444
Q ss_pred HHHhc---CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCC
Q 013007 210 LLSFY---KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPE 259 (451)
Q Consensus 210 ~l~~~---~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~ 259 (451)
.+..+ +. ....+++++||+++ .|+.+|++.|.+.++.+.
T Consensus 172 ~l~~~~~~~~-~~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 172 SLDAYRDAGY-AGKLTVQLFSALKR----------TGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHHHHHHTC-CSCEEEEEEBTTTT----------BSHHHHHHHHHHHHC---
T ss_pred HHHhhhhccc-CCCCeEEEeecCCC----------cCHHHHHHHHHHhcCccC
Confidence 44432 11 13478999999998 899999999999887554
No 35
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.85 E-value=1.1e-20 Score=182.47 Aligned_cols=163 Identities=18% Similarity=0.219 Sum_probs=122.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-CeeEEEEecCChH-
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHA- 139 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~- 139 (451)
..+.-.|+++|++|+|||||+|+|++.. .. ......+.|.......+... +.+++||||||+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~------~~---------i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~ 71 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTK------VS---------IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSC------CS---------CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCC------cc---------ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCc
Confidence 3456799999999999999999998531 11 11222345555544555666 8899999999983
Q ss_pred ---------HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHH-HHHHHHcCCCeEEEEEeeccCC-ChHHHHHHHHHHHH
Q 013007 140 ---------DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEH-ILLARQVGVPSLVCFLNKVDLV-EDEELLELVEMELR 208 (451)
Q Consensus 140 ---------~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~-l~~~~~~~ip~iivviNK~D~~-~~~~~~~~~~~~~~ 208 (451)
.|...+..++..+|++++|+|++++...++... +..+...++| +++|+||+|+. +.+.. . +.+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~p-vilV~NK~Dl~~~~~~~-~---~~~~ 146 (308)
T 3iev_A 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKP-VIVVINKIDKIGPAKNV-L---PLID 146 (308)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCC-EEEEEECGGGSSSGGGG-H---HHHH
T ss_pred cccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCC-EEEEEECccCCCCHHHH-H---HHHH
Confidence 355677788889999999999999988888887 7777778888 77999999998 43322 2 2333
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
.+.+.++ ...+++++||++| .|+++|++.|.+.++.
T Consensus 147 ~l~~~~~---~~~~i~~vSA~~g----------~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 147 EIHKKHP---ELTEIVPISALKG----------ANLDELVKTILKYLPE 182 (308)
T ss_dssp HHHHHCT---TCCCEEECBTTTT----------BSHHHHHHHHHHHSCB
T ss_pred HHHHhcc---CCCeEEEEeCCCC----------CCHHHHHHHHHHhCcc
Confidence 4444442 2368999999999 8999999999998874
No 36
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.84 E-value=1.9e-20 Score=162.50 Aligned_cols=153 Identities=22% Similarity=0.195 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH-----
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD----- 140 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~----- 140 (451)
++|+++|+.|+|||||+++|.+... ...+...+.|.+.....+...+..+.+|||||+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 66 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRS---------------AVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWE 66 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCSSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCe---------------eeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchH
Confidence 5899999999999999999985410 01112224555555555666778899999999887
Q ss_pred --HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 141 --YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 141 --~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
+.......+..+|++++|+|++++...........+...++| +++|+||+|+.+.++ ++.++. .+++
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~-------~~~~~~-~~~~-- 135 (161)
T 2dyk_A 67 KKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDDPKHEL-------YLGPLY-GLGF-- 135 (161)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCSGGGGG-------GCGGGG-GGSS--
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECcccccchH-------hHHHHH-hCCC--
Confidence 556666778899999999999998777666777777777888 779999999975421 222333 3333
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||+++ .|++++++.|.+.+|
T Consensus 136 --~~~~~~Sa~~~----------~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 136 --GDPIPTSSEHA----------RGLEELLEAIWERLP 161 (161)
T ss_dssp --CSCEECBTTTT----------BSHHHHHHHHHHHCC
T ss_pred --CCeEEEecccC----------CChHHHHHHHHHhCc
Confidence 37999999998 899999999988765
No 37
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=6.6e-21 Score=168.37 Aligned_cols=161 Identities=30% Similarity=0.389 Sum_probs=116.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+...+|+++|.+|+|||||+++|++..... ....+++.+.....+...+..+.+|||||+++|.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 69 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE----------------QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFT 69 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC----------------SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc----------------CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHH
Confidence 345799999999999999999998542111 1112333333333455567889999999999987
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC----
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG---- 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~---- 218 (451)
.....++..+|++++|+|++++...++.+.+..+...++| +++|+||+|+.+... + ++...++......
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~~--~----~~~~~~~~~~~~~~~~~ 142 (178)
T 2lkc_A 70 TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDKPEANP--D----RVMQELMEYNLVPEEWG 142 (178)
T ss_dssp CSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTSSCSCH--H----HHHHHHTTTTCCBTTTT
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccCCcCCH--H----HHHHHHHhcCcChhHcC
Confidence 7777778889999999999998888888888887777888 779999999986311 1 1222222222111
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
...+++++||+++ .|++++++.|.+.+.
T Consensus 143 ~~~~~~~~Sa~~~----------~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 143 GDTIFCKLSAKTK----------EGLDHLLEMILLVSE 170 (178)
T ss_dssp SSEEEEECCSSSS----------HHHHHHHHHHHHHHH
T ss_pred CcccEEEEecCCC----------CCHHHHHHHHHHhhh
Confidence 1258999999999 999999999876543
No 38
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=1.9e-20 Score=189.66 Aligned_cols=150 Identities=21% Similarity=0.291 Sum_probs=107.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh-----
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH----- 138 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~----- 138 (451)
..++|+++|++|+|||||+|+|++.. ....+...|+|.+.....+...+..+.||||||+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~---------------~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 238 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEE---------------RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGK 238 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTST---------------TEEEC---------CCEEEEETTEEEEETTHHHHTCBTT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCC---------------ceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCcc
Confidence 45899999999999999999998531 1112234477777766677778889999999998
Q ss_pred -----HHHHHH-HHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHH-HHHHHHHHHHHHH
Q 013007 139 -----ADYVKN-MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE-LLELVEMELRELL 211 (451)
Q Consensus 139 -----~~~~~~-~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~-~~~~~~~~~~~~l 211 (451)
+.|... ...++..+|++++|+|++++...|+.+++..+...++| +|+|+||+|+.+..+ ..+++.+++.+.+
T Consensus 239 ~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l 317 (436)
T 2hjg_A 239 VYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDHF 317 (436)
T ss_dssp BCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCTTHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCc-EEEEEECccCCCcchHHHHHHHHHHHHhc
Confidence 556433 34578889999999999999999999888888888888 789999999986322 2334444444444
Q ss_pred HhcCCCCCCCCeeecccccccc
Q 013007 212 SFYKFPGDEIPIIRGSATSALQ 233 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~ 233 (451)
... ...|++++||++|.+
T Consensus 318 ~~~----~~~~~~~~SA~tg~~ 335 (436)
T 2hjg_A 318 QFL----DYAPILFMSALTKKR 335 (436)
T ss_dssp GGG----TTSCEEECCTTTCTT
T ss_pred ccC----CCCCEEEEecccCCC
Confidence 433 247899999999843
No 39
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.82 E-value=2.5e-20 Score=165.05 Aligned_cols=163 Identities=15% Similarity=0.183 Sum_probs=110.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
....++|+++|+.|+|||||+++|++....... ....+.+.......+......+.||||||+++|
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 74 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ--------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTS--------------CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcC--------------CCCceeEEEEEEEEECCEEEEEEEEeCCCChhh
Confidence 445689999999999999999999854111000 011122232333333333457899999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
.......+..+|++++|+|+++... ......+..+... ++| +++|+||+|+.+..+. ..+++.++.+..+
T Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 148 (181)
T 2efe_B 75 HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDARKV---TAEDAQTYAQENG-- 148 (181)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCS---CHHHHHHHHHHTT--
T ss_pred hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccccC---CHHHHHHHHHHcC--
Confidence 8888888899999999999987433 2233344444443 556 7899999999753221 1124445555543
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
++++++||+++ .|+++++++|.+.++.
T Consensus 149 ---~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 149 ---LFFMETSAKTA----------TNVKEIFYEIARRLPR 175 (181)
T ss_dssp ---CEEEECCSSSC----------TTHHHHHHHHHHTCC-
T ss_pred ---CEEEEEECCCC----------CCHHHHHHHHHHHHHh
Confidence 57999999998 9999999999987763
No 40
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.82 E-value=6.3e-20 Score=166.53 Aligned_cols=169 Identities=14% Similarity=0.086 Sum_probs=108.1
Q ss_pred cchhhhccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEE--EeeeCCeeEE
Q 013007 54 RSMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHV--EYETAKRHYA 131 (451)
Q Consensus 54 ~~~~~~~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~--~~~~~~~~i~ 131 (451)
..|..+....+.++|+++|.+|+|||||+++|++...... ....+.+.... .+......+.
T Consensus 19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~ 81 (204)
T 4gzl_A 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLG 81 (204)
T ss_dssp -----------CEEEEEEESTTSSHHHHHHHHHHSCCCC------------------CCCCSEEEEEEEEECC-CEEEEE
T ss_pred hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCC-----------------cCCeecceeEEEEEECCEEEEEE
Confidence 3444455566789999999999999999999985311100 00111111122 2222334566
Q ss_pred EEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHH--HHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHH---
Q 013007 132 HVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLELVE--- 204 (451)
Q Consensus 132 iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~--~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~--- 204 (451)
||||||+++|.......+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+.....+.+.
T Consensus 82 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~ 160 (204)
T 4gzl_A 82 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKK 160 (204)
T ss_dssp EEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHHTCHHHHHHHHHTT
T ss_pred EEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhccchhhhhhhhccc
Confidence 999999999988888888999999999999874332222 233344443 777 779999999987544333221
Q ss_pred ------HHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 205 ------MELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 205 ------~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
++...+.+.++. .+++++||++| .|++++++.|.+.
T Consensus 161 ~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g----------~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 161 LTPITYPQGLAMAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRA 202 (204)
T ss_dssp CCCCCHHHHHHHHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHhcCC----cEEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 244556666554 57999999999 9999999998764
No 41
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.82 E-value=3e-19 Score=159.97 Aligned_cols=159 Identities=23% Similarity=0.279 Sum_probs=114.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC------
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG------ 137 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG------ 137 (451)
..++|+++|+.|+|||||+++|++... .......+.|....... .+..+.+|||||
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~ 83 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKI---------------AFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKV 83 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCC---------------SCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCcc---------------ccccCCCCCccCeEEEE---ECCcEEEEECCCCccccC
Confidence 456999999999999999999985420 00111123343333222 245689999999
Q ss_pred ----hHHHHH---HHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHH
Q 013007 138 ----HADYVK---NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (451)
Q Consensus 138 ----~~~~~~---~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (451)
++.|.. ........+|++++|+|++.+........+..+...++| +++|+||+|+.++.+. +...+++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~-~~~~~~~~~~ 161 (195)
T 3pqc_A 84 SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIP-FTIVLTKMDKVKMSER-AKKLEEHRKV 161 (195)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGH-HHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEEChhcCChHHH-HHHHHHHHHH
Confidence 555544 344444556999999999988887777888888888999 7799999999864433 3334456666
Q ss_pred HHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+...+ ..+++++||+++ .|+++++++|.+.++
T Consensus 162 ~~~~~----~~~~~~~Sa~~~----------~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 162 FSKYG----EYTIIPTSSVTG----------EGISELLDLISTLLK 193 (195)
T ss_dssp HHSSC----CSCEEECCTTTC----------TTHHHHHHHHHHHHC
T ss_pred HhhcC----CCceEEEecCCC----------CCHHHHHHHHHHHhh
Confidence 66543 368999999999 999999999988765
No 42
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.81 E-value=3.3e-19 Score=160.01 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=110.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC-----
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG----- 137 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG----- 137 (451)
...++|+++|++|+|||||+++|++.... .......|.|.......+ +..+.+|||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNL--------------ARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAK 83 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEEE---TTTEEEEECCCBCCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--------------cccCCCCCceeeEEEEEE---CCcEEEEECCCCCccc
Confidence 34689999999999999999999854110 001112234444333333 34699999999
Q ss_pred -----hHHHHHHHHHhcccC---CEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHH
Q 013007 138 -----HADYVKNMITGAAQM---DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRE 209 (451)
Q Consensus 138 -----~~~~~~~~~~~~~~~---d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~ 209 (451)
++.|.......+..+ |++++|+|++++......+.+..+...++| +++|+||+|+.+..+. +...+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~-~~~~~~~~~ 161 (195)
T 1svi_A 84 VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP-VIVIATKADKIPKGKW-DKHAKVVRQ 161 (195)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGH-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChHHH-HHHHHHHHH
Confidence 677765555555555 999999999998877777777777778888 7799999999875432 222233333
Q ss_pred HHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 210 ~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+. . ....+++++||+++ .|+.++++.|.+.++
T Consensus 162 ~~~---~-~~~~~~~~~Sa~~~----------~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 162 TLN---I-DPEDELILFSSETK----------KGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHT---C-CTTSEEEECCTTTC----------TTHHHHHHHHHHHHT
T ss_pred HHc---c-cCCCceEEEEccCC----------CCHHHHHHHHHHHhc
Confidence 332 2 13478999999998 899999999987654
No 43
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=1.8e-19 Score=161.18 Aligned_cols=161 Identities=17% Similarity=0.115 Sum_probs=109.8
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
.+..++|+++|++|+|||||+++|.+...... ...|+......+...+..+.||||||+++|
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNED------------------MIPTVGFNMRKITKGNVTIKLWDIGGQPRF 80 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCS------------------CCCCCSEEEEEEEETTEEEEEEEECCSHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCc------------------cCCCCceeEEEEEeCCEEEEEEECCCCHhH
Confidence 45578999999999999999999985411100 011222223335567888999999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
.......+..+|++++|+|+++... ....+.+..+.. .++| +++|+||+|+.+..+. + ++.+.+.....
T Consensus 81 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~~~~~~~~~~~ 154 (188)
T 1zd9_A 81 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGALDE-K----ELIEKMNLSAI 154 (188)
T ss_dssp HTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCCH-H----HHHHHTTGGGC
T ss_pred HHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCccCCCH-H----HHHHHhChhhh
Confidence 8888888899999999999987432 222233333322 4677 7899999999763211 1 11111211112
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.....+++++||+++ .|+++++++|.+.+.
T Consensus 155 ~~~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 155 QDREICCYSISCKEK----------DNIDITLQWLIQHSK 184 (188)
T ss_dssp CSSCEEEEECCTTTC----------TTHHHHHHHHHHTCC
T ss_pred ccCCeeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 223568999999999 899999999988765
No 44
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.81 E-value=4.9e-20 Score=187.71 Aligned_cols=161 Identities=22% Similarity=0.301 Sum_probs=117.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC-----
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG----- 137 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG----- 137 (451)
....+|+++|++|+|||||+++|++. ... ..+...|+|.+.....++..+..++||||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~------~~~---------~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~ 257 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGE------ERV---------IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKG 257 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS------TTE---------EECC------CTTSEEEEETTEEEEETTGGGTTTBT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCC------Ccc---------ccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCc
Confidence 34689999999999999999999843 111 1122336676665566777788999999999
Q ss_pred -----hHHHHHH-HHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh-HHHHHHHHHHHHHH
Q 013007 138 -----HADYVKN-MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED-EELLELVEMELREL 210 (451)
Q Consensus 138 -----~~~~~~~-~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~-~~~~~~~~~~~~~~ 210 (451)
+++|... ...++..+|++++|+|++++...++.+++..+...++| +|+|+||+|+.+. +...+++.+.+++.
T Consensus 258 ~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 258 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDH 336 (456)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChhcCCCchHHHHHHHHHHHHh
Confidence 6777554 44578899999999999999999999999999999988 7799999999862 23344455555555
Q ss_pred HHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
+...+ ..|++++||++| .|+++|++.+.+
T Consensus 337 ~~~~~----~~~~~~~SA~~g----------~gv~~l~~~i~~ 365 (456)
T 4dcu_A 337 FQFLD----YAPILFMSALTK----------KRIHTLMPAIIK 365 (456)
T ss_dssp CGGGT----TSCEEECCTTTC----------TTGGGHHHHHHH
T ss_pred cccCC----CCCEEEEcCCCC----------cCHHHHHHHHHH
Confidence 54433 379999999998 555555555544
No 45
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=3.9e-20 Score=161.74 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=107.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
+.++|+++|+.|+|||||+++|.+...... .....|.+.......+......+.+|||||+++|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 67 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAEN--------------KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT--------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh
Confidence 357999999999999999999985421100 001113333333333333345789999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
.....+..+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.+.....+...++..++.+..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~---- 142 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXLQEGGERKVAREEGEKLAEEKG---- 142 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT----
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccccCCCHHHHHHHHHHcC----
Confidence 88888999999999999987432222 222223332 2566 77999999987531100001123344455443
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||+++ .|++++++.|.+.++
T Consensus 143 -~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 143 -LLFFETSAKTG----------ENVNDVFLGIGEKIP 168 (170)
T ss_dssp -CEEEECCTTTC----------TTHHHHHHHHHTTSC
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 47999999998 999999999988664
No 46
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=7.2e-20 Score=164.34 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=113.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+..++|+++|..|+|||||+++|++..... ......|.+.......+......+.||||||+++|.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDH--------------NISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH 86 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCT--------------TCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCC--------------CcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH
Confidence 456899999999999999999998542110 011122444444444455456789999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
......+..+|++++|+|+++....+ ....+..+... ++| +++|+||+|+.+..+. ..+++.++++.++
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~v---~~~~~~~~~~~~~--- 159 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV-MAIAGNKCDLSDIREV---PLKDAKEYAESIG--- 159 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHTTT---
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcC---
Confidence 88888889999999999998743322 23333334433 566 7899999999642111 1124455565543
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
.+++++||+++ .|++++++.|.+.++.
T Consensus 160 --~~~~~~Sa~~~----------~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 160 --AIVVETSAKNA----------INIEELFQGISRQIPP 186 (192)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHTCC-
T ss_pred --CEEEEEeCCCC----------cCHHHHHHHHHHHHHh
Confidence 57999999998 8999999999987763
No 47
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.81 E-value=6.4e-20 Score=164.64 Aligned_cols=167 Identities=19% Similarity=0.221 Sum_probs=110.4
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEE-----EeeeCCeeEEEEec
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHV-----EYETAKRHYAHVDC 135 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~-----~~~~~~~~i~iiDt 135 (451)
.....++|+++|++|+|||||++.|.+........... ........|+..... .+......+.+|||
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt 81 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMV--------SLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTV 81 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCE--------EEECSSCEEEEEEECCSSCCCSSSCEEEEEEEEC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhcccccccccc--------ccccccccceeeeecccccccccCCceEEEEEeC
Confidence 35567899999999999999998776532111100000 000001122222111 12223457899999
Q ss_pred CChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHH---------cCCCeEEEEEeeccCCChHHHHHHHHHH
Q 013007 136 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ---------VGVPSLVCFLNKVDLVEDEELLELVEME 206 (451)
Q Consensus 136 PG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~---------~~ip~iivviNK~D~~~~~~~~~~~~~~ 206 (451)
||+++|......+++.+|++++|+|++++...+..+.+..+.. .++| +++|+||+|+.+... .++
T Consensus 82 ~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~~-----~~~ 155 (198)
T 3t1o_A 82 PGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDLPDALP-----VEM 155 (198)
T ss_dssp CSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTSTTCCC-----HHH
T ss_pred CChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhcccccC-----HHH
Confidence 9999998888889999999999999986554444444433322 3677 779999999976311 124
Q ss_pred HHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 207 ~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+.++++..++ .+++++||+++ .|+.++++.|.+.+
T Consensus 156 ~~~~~~~~~~----~~~~~~Sa~~~----------~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 156 VRAVVDPEGK----FPVLEAVATEG----------KGVFETLKEVSRLV 190 (198)
T ss_dssp HHHHHCTTCC----SCEEECBGGGT----------BTHHHHHHHHHHHH
T ss_pred HHHHHHhcCC----ceEEEEecCCC----------cCHHHHHHHHHHHH
Confidence 5556665443 38999999998 89999999887654
No 48
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.81 E-value=1.7e-19 Score=160.35 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=109.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
..++|+++|++|+|||||+++|++......... ..+... .....+......+.+|||||+++|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~--------------t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 68 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP--------------TVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDR 68 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCC--------------CSCCEE-EEEEEETTEEEEEEEECCCCSGGGTT
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCC--------------ccccee-EEEEEECCEEEEEEEEECCCCHhHHH
Confidence 468999999999999999999985421100000 001111 11122222234677999999999987
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHH--HHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHH---------HHHHHH
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLELVE---------MELREL 210 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~--~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~---------~~~~~~ 210 (451)
.....+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+.....+.+. ++..++
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 147 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEcccccccchhhhhhcccccccCCHHHHHHH
Confidence 777788899999999999874332222 233344433 677 779999999976443322221 234455
Q ss_pred HHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCC
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~ 258 (451)
.+.++. .+++++||++| .|++++++.|.+.+..+
T Consensus 148 ~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 148 AKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHHHSCC
T ss_pred HHhcCC----cEEEEecCCCc----------cCHHHHHHHHHHHHhcc
Confidence 555543 48999999999 99999999998877644
No 49
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.81 E-value=1.1e-19 Score=174.90 Aligned_cols=159 Identities=21% Similarity=0.190 Sum_probs=112.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH-HHH-
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA-DYV- 142 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~-~~~- 142 (451)
..+|+++|++|+|||||+|+|++.. .... .+ ..+.|.......+...+.+++|+||||+. ++.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~------~~i~---s~------~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~ 72 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK------ISIT---SR------KAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 72 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS------EEEC---CC------CSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------cccc---CC------CCCcceeeEEEEEEECCeeEEEEECcCCCccchh
Confidence 4589999999999999999999541 1110 01 11223222222345567889999999987 322
Q ss_pred -------HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 143 -------KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 143 -------~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
.....++..+|++++|+|+++ +..++.+.+..+...+.| +++++||+|+....+. +.+.+.++.+.++
T Consensus 73 ~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P-~ilvlNK~D~~~~~~~---~~~~l~~l~~~~~ 147 (301)
T 1ega_A 73 AINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAP-VILAVNKVDNVQEKAD---LLPHLQFLASQMN 147 (301)
T ss_dssp HHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSC-EEEEEESTTTCCCHHH---HHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCC-EEEEEECcccCccHHH---HHHHHHHHHHhcC
Confidence 222445678999999999988 888888888777777889 6689999999862222 2233444544444
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
+ .+++++||+++ .++.+|++.+...+|.
T Consensus 148 ~----~~~i~iSA~~g----------~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 148 F----LDIVPISAETG----------LNVDTIAAIVRKHLPE 175 (301)
T ss_dssp C----SEEEECCTTTT----------TTHHHHHHHHHTTCCB
T ss_pred c----CceEEEECCCC----------CCHHHHHHHHHHhCCc
Confidence 3 36899999998 8999999999988763
No 50
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.80 E-value=1.1e-19 Score=158.98 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=109.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|+++|++|+|||||+++|++..... ..+...+.+.......+......+.+|||||+++|.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 69 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHE--------------FQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH 69 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh
Confidence 346899999999999999999998531110 001112333333334444345678999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
......+..+|++++|+|+++... ......+..+... ++| +++|.||+|+.++.... .++..++.+..+
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 142 (170)
T 1r2q_A 70 SLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV-IALSGNKADLANKRAVD---FQEAQSYADDNS--- 142 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT---
T ss_pred hhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccccC---HHHHHHHHHHcC---
Confidence 888888899999999999987432 2222333333332 455 77889999986421110 123344555543
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||++| .|+++++++|.+.++
T Consensus 143 --~~~~~~Sa~~g----------~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 143 --LLFMETSAKTS----------MNVNEIFMAIAKKLP 168 (170)
T ss_dssp --CEEEECCTTTC----------TTHHHHHHHHHHTSC
T ss_pred --CeEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 57999999999 999999999988765
No 51
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.80 E-value=1.3e-19 Score=160.00 Aligned_cols=161 Identities=14% Similarity=0.054 Sum_probs=109.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC---eeEEEEecCChH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK---RHYAHVDCPGHA 139 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~---~~i~iiDtPG~~ 139 (451)
++.++|+++|++|+|||||+++|++... ..+....++.+.....+...+ ..+.+|||||++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF----------------GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT----------------THHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC----------------CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCc
Confidence 4568999999999999999999985421 111111222222222333333 678999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHH-----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
+|.......+..+|++++|+|+++.... .....+..+.. .+.|.+++|+||+|+.+..... .++..++.+.
T Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~---~~~~~~~~~~ 144 (178)
T 2hxs_A 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK---PEKHLRFCQE 144 (178)
T ss_dssp TTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC---HHHHHHHHHH
T ss_pred cccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC---HHHHHHHHHH
Confidence 9887778888999999999999874322 22233333333 2677678899999996521110 1234445555
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
++ ++++++||+++ .|++++++.|.+.+..
T Consensus 145 ~~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 145 NG-----FSSHFVSAKTG----------DSVFLCFQKVAAEILG 173 (178)
T ss_dssp HT-----CEEEEECTTTC----------TTHHHHHHHHHHHHTT
T ss_pred cC-----CcEEEEeCCCC----------CCHHHHHHHHHHHHHh
Confidence 43 57999999998 8999999999887653
No 52
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.80 E-value=5.6e-19 Score=155.75 Aligned_cols=161 Identities=16% Similarity=0.082 Sum_probs=108.2
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCCh
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGH 138 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~ 138 (451)
.....++|+++|++|+|||||+++|.+.... .+....++.+.....+..++ ..+.+|||||+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFD----------------TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCC----------------C----CCSEEEEEEEEEETTEEEEEEEEECCCC
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCc
Confidence 3456789999999999999999999854111 11112233333333333444 57899999999
Q ss_pred HHHHHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH-------cCCCeEEEEEeeccCCChHHHHHHHHHHHHHH
Q 013007 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-------VGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (451)
Q Consensus 139 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~-------~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (451)
++|.......+..+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.+.+... +++.++
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~----~~~~~~ 141 (177)
T 1wms_A 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDISERQVST----EEAQAW 141 (177)
T ss_dssp GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCSSCSSCH----HHHHHH
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCcccccccCH----HHHHHH
Confidence 9999888888999999999999987432221 222222221 4567 77999999997422111 233444
Q ss_pred HHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+.. ...+++++||+++ .|++++++.|.+.+.
T Consensus 142 ~~~~----~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 142 CRDN----GDYPYFETSAKDA----------TNVAAAFEEAVRRVL 173 (177)
T ss_dssp HHHT----TCCCEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred HHhc----CCceEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 4432 2468999999998 899999999877553
No 53
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.1e-19 Score=160.50 Aligned_cols=162 Identities=17% Similarity=0.121 Sum_probs=105.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+..++|+++|+.|+|||||+++|.+.... .. ..|+......+...+..+.+|||||+++|.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~------~~-------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 74 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV------HT-------------SPTIGSNVEEIVINNTRFLMWDIGGQESLR 74 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE------EE-------------ECCSCSSCEEEEETTEEEEEEECCC----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC------cC-------------cCCCccceEEEEECCEEEEEEECCCCHhHH
Confidence 45689999999999999999999843110 00 011111122334467889999999999988
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......+..+|++++|+|+++... ......+..+.. .++| +++|+||+|+.+... .+ ++.+.+....+.
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~ 148 (187)
T 1zj6_A 75 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMT-VA----EISQFLKLTSIK 148 (187)
T ss_dssp GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHHTGGGCC
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCCCC-HH----HHHHHhChhhhc
Confidence 777778889999999999988643 223333333332 3566 789999999976311 11 222233221122
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPE 259 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~ 259 (451)
...++++++||++| .|+++++++|.+.++.+.
T Consensus 149 ~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 149 DHQWHIQACCALTG----------EGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp SSCEEEEECBTTTT----------BTHHHHHHHHHHHHCC--
T ss_pred CCCcEEEEccCCCC----------cCHHHHHHHHHHHHHHHh
Confidence 23468999999999 899999999988776443
No 54
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=1.6e-19 Score=161.87 Aligned_cols=160 Identities=14% Similarity=0.098 Sum_probs=112.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|+++|+.|+|||||+++|++........ ...|.+.......+......+.||||||+++|.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV--------------STVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR 86 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE--------------EEETTTEEEEEEEETTTTEEEEEECHHHHHHCH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccC--------------CCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 456899999999999999999998652211110 111444444455555566789999999999999
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
......+..+|++++|+|+++... ......+..+.. .++| +++|+||+|+.+..... .++...+.+.++
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 159 (191)
T 3dz8_A 87 TITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEERVVP---TEKGQLLAEQLG--- 159 (191)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT---
T ss_pred HHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC---HHHHHHHHHHcC---
Confidence 999899999999999999986322 223334444444 3566 78999999986422111 123444555544
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||+++ .|+.++++.|.+.+
T Consensus 160 --~~~~~~Sa~~~----------~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 --FDFFEASAKEN----------ISVRQAFERLVDAI 184 (191)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 47999999998 88999998887654
No 55
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.80 E-value=1.7e-19 Score=157.76 Aligned_cols=161 Identities=18% Similarity=0.185 Sum_probs=110.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
.+.++|+++|++|+|||||+++|.+..... ......|.+.......+......+.+|||||+++|.
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 69 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDP--------------NINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR 69 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh
Confidence 346899999999999999999998542110 001122444444444444344678999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
......+..+|++++|+|+++....+. ...+..+... ++| +++|+||+|+.+..+.. .++...+.+..+
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~--- 142 (170)
T 1z0j_A 70 ALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVREVM---ERDAKDYADSIH--- 142 (170)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGCCSC---HHHHHHHHHHTT---
T ss_pred cccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECCccccccccC---HHHHHHHHHHcC---
Confidence 888888899999999999987433222 2333444433 345 77899999997532211 123444555543
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||+++ .|++++++.|.+.++
T Consensus 143 --~~~~~~Sa~~~----------~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 143 --AIFVETSAKNA----------ININELFIEISRRIP 168 (170)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHHCC
T ss_pred --CEEEEEeCCCC----------cCHHHHHHHHHHHHh
Confidence 57999999998 899999999988765
No 56
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.80 E-value=1.9e-20 Score=187.30 Aligned_cols=159 Identities=21% Similarity=0.262 Sum_probs=116.4
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCe-eEEEEecCChHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKR-HYAHVDCPGHAD 140 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~i~iiDtPG~~~ 140 (451)
....++|+++|++|+|||||+++|++.. ....+...|+|++.....++..+. .++|||||||.+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~---------------~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d 95 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQN---------------VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD 95 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSSTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCC---------------CCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc
Confidence 3456899999999999999999997431 112234457777777666666654 899999999987
Q ss_pred H-------HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 141 Y-------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 141 ~-------~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
| ...+...+..+|++++|+|+ +...++.+.+..+...++| +++|+||+|+.+.... +..+++.+.
T Consensus 96 ~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~p-iIvV~NK~Dl~~~~~~-----~~~~~l~~~ 167 (423)
T 3qq5_A 96 VGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIP-FVVVVNKIDVLGEKAE-----ELKGLYESR 167 (423)
T ss_dssp CCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCC-EEEECCCCTTTTCCCT-----HHHHHSSCC
T ss_pred ccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCC-EEEEEeCcCCCCccHH-----HHHHHHHHH
Confidence 6 34466678889999999999 7788899999999999999 7799999999864321 122222222
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCC
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~ 258 (451)
+ .++++++||++| .|++++++.|.+.++.+
T Consensus 168 ~-----g~~v~~vSAktg----------~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 168 Y-----EAKVLLVSALQK----------KGFDDIGKTISEILPGD 197 (423)
T ss_dssp T-----TCCCCCCSSCCT----------TSTTTHHHHHHHHSCCC
T ss_pred c-----CCCEEEEECCCC----------CCHHHHHHHHHHhhhhh
Confidence 2 368999999998 88999999999988644
No 57
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.80 E-value=6.3e-20 Score=174.32 Aligned_cols=155 Identities=25% Similarity=0.337 Sum_probs=112.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH--
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV-- 142 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~-- 142 (451)
.++|+++|++|+|||||+|+|++... . .....|+|++.....+...+..+.+|||||+.+|.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-------~---------v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 66 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-------R---------VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-------E---------EEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC-
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-------c---------cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccc
Confidence 57999999999999999999985421 1 11223778877777777778899999999987754
Q ss_pred ----------HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHH
Q 013007 143 ----------KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (451)
Q Consensus 143 ----------~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~ 212 (451)
.........+|++++|+|+++ ..........+...++| +++|+||+|+.+.... ......+.+
T Consensus 67 ~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p-~ivv~NK~Dl~~~~~~----~~~~~~l~~ 139 (274)
T 3i8s_A 67 SSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIP-CIVALNMLDIAEKQNI----RIEIDALSA 139 (274)
T ss_dssp ---CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCC-EEEEEECHHHHHHTTE----EECHHHHHH
T ss_pred cccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCC-EEEEEECccchhhhhH----HHHHHHHHH
Confidence 111122368999999999987 23444555666777999 7799999998642111 112233444
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
.++ +|++++||++| .|+++|+++|.+.++.
T Consensus 140 ~lg-----~~~i~~SA~~g----------~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 140 RLG-----CPVIPLVSTRG----------RGIEALKLAIDRYKAN 169 (274)
T ss_dssp HHT-----SCEEECCCGGG----------HHHHHHHHHHHTCCCC
T ss_pred hcC-----CCEEEEEcCCC----------CCHHHHHHHHHHHHhc
Confidence 443 58999999999 9999999999987763
No 58
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=3.8e-19 Score=157.28 Aligned_cols=160 Identities=14% Similarity=0.111 Sum_probs=101.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
+..++|+++|++|+|||||+++|.+.... ..+....++.+.....+...+ ..+.+|||||+++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFL---------------AGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 72 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC---------------CCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC---------------CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 45689999999999999999999854211 001111233333222233333 4789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
|.......+..+|++++|+|+++.... .....+..+.. .++| +++|+||+|+.++.+.. .++..++.+.++
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 147 (180)
T 2g6b_A 73 FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAHERVVK---REDGEKLAKEYG- 147 (180)
T ss_dssp ------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTSCCCSC---HHHHHHHHHHHT-
T ss_pred HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccCcccccC---HHHHHHHHHHcC-
Confidence 988888889999999999999874322 22333333333 3566 78999999998532111 123334455543
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++++||+++ .|+++++++|.+.+.
T Consensus 148 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 148 ----LPFMETSAKTG----------LNVDLAFTAIAKELK 173 (180)
T ss_dssp ----CCEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 47999999998 899999999987654
No 59
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.79 E-value=2.9e-19 Score=160.80 Aligned_cols=161 Identities=18% Similarity=0.179 Sum_probs=108.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
..+..+|+++|+.|+|||||+++|++...... + ...|+......++.....+.||||||+++|
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---------------~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 76 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK---------------H--ITATVGYNVETFEKGRVAFTVFDMGGAKKF 76 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC-------------------C--CCCCSSEEEEEEEETTEEEEEEEECCSGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccc---------------c--cccccceeEEEEEeCCEEEEEEECCCCHhH
Confidence 45578999999999999999999984321110 0 011222223334567889999999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc-----------CCCeEEEEEeeccCCChHHHHHHHHHHHH-
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV-----------GVPSLVCFLNKVDLVEDEELLELVEMELR- 208 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~-----------~ip~iivviNK~D~~~~~~~~~~~~~~~~- 208 (451)
.......+..+|++|+|+|+++... ....+.+..+... ++| +++|+||+|+.+... .+++.+.+.
T Consensus 77 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~~~~~~~~ 154 (199)
T 4bas_A 77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDAAGAKT-AAELVEILDL 154 (199)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTSTTCCC-HHHHHHHHTH
T ss_pred HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCCCCCCC-HHHHHHHhcc
Confidence 8888888999999999999997542 2233333333332 777 779999999986421 111222221
Q ss_pred -HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 209 -ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 209 -~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+.+. ..++++++||+++ .|++++++.|.+.+.
T Consensus 155 ~~~~~~-----~~~~~~~~Sa~~g----------~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 155 TTLMGD-----HPFVIFASNGLKG----------TGVHEGFSWLQETAS 188 (199)
T ss_dssp HHHHTT-----SCEEEEECBTTTT----------BTHHHHHHHHHHHHH
T ss_pred hhhccC-----CeeEEEEeeCCCc----------cCHHHHHHHHHHHHH
Confidence 11122 3468999999998 899999999987654
No 60
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=161.25 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=107.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|+++|+.|+|||||+++|.+...... + ...|+......+...+..+.+|||||+++|.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---------------~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ---------------N--ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR 81 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCS---------------S--CCCCSSEEEEEEECSSCEEEEEEECCSTTTG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCC---------------C--cCCccceeEEEEEECCEEEEEEECCCCHHHH
Confidence 3468999999999999999999985421000 0 1122222333345557889999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH------cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~------~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
......+..+|++++|+|+++... ......+..+.. .++| +++|+||+|+.+... .+ ++.+.++...
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~ 155 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLRDAVT-SV----KVSQLLCLEN 155 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTSTTCCC-HH----HHHHHHTGGG
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcccCCC-HH----HHHHHhChhh
Confidence 877788899999999999987421 222233333332 3677 779999999976321 11 2333332111
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+....++++++||+++ .|+++++++|.+.+.
T Consensus 156 ~~~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 156 IKDKPWHICASDAIKG----------EGLQEGVDWLQDQIQ 186 (190)
T ss_dssp CCSSCEEEEECBTTTT----------BTHHHHHHHHHHHC-
T ss_pred ccCCceEEEEccCCCC----------cCHHHHHHHHHHHHH
Confidence 2223568999999998 899999999988664
No 61
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=159.17 Aligned_cols=159 Identities=17% Similarity=0.111 Sum_probs=110.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
...++|+++|++|+|||||+++|++... ..+...+++.+.....+...+ ..+.||||||+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 77 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTY----------------TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC----------------CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC----------------CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 4568999999999999999999985311 111122344444444444444 5789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
|.......+..+|++++|+|+++... ......+..+... ++| +++|+||+|+.+..... .++..++.+.++
T Consensus 78 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 152 (196)
T 3tkl_A 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVD---YTTAKEFADSLG- 152 (196)
T ss_dssp GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSC---HHHHHHHHHHTT-
T ss_pred hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccC---HHHHHHHHHHcC-
Confidence 98888888999999999999987432 2223333334333 566 77899999997632211 123445555554
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++++||+++ .|++++++.|.+.+.
T Consensus 153 ----~~~~~~Sa~~g----------~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 153 ----IPFLETSAKNA----------TNVEQSFMTMAAEIK 178 (196)
T ss_dssp ----CCEEEECTTTC----------TTHHHHHHHHHHHHH
T ss_pred ----CcEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999998 889988888876553
No 62
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.79 E-value=2.5e-19 Score=158.08 Aligned_cols=160 Identities=15% Similarity=0.135 Sum_probs=108.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|+++|+.|+|||||+++|.+...... .....+.+.......+......+.+|||||+++|.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 78 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMAD--------------CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR 78 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSS--------------CTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEEEEEEECCeEEEEEEEECCCChHhh
Confidence 4568999999999999999999985421100 00111333333333333334578999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
......+..+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.+..+. ..+++.++++..+
T Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 151 (179)
T 1z0f_A 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDV---TYEEAKQFAEENG--- 151 (179)
T ss_dssp HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT---
T ss_pred hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcC---
Confidence 888888999999999999987533222 223333333 3566 7899999999642211 0124445566543
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||+++ .|+++++++|.+.+
T Consensus 152 --~~~~~~Sa~~~----------~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 152 --LLFLEASAKTG----------ENVEDAFLEAAKKI 176 (179)
T ss_dssp --CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 89999999987654
No 63
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.79 E-value=2.2e-19 Score=156.31 Aligned_cols=158 Identities=20% Similarity=0.147 Sum_probs=103.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
+.++|+++|++|+|||||+++|.+....... . ...+ +.......+......+.+|||||+++|..
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~---~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKY-----------D---PTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFAS 66 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----------C---TTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccC-----------C---CCcc-eeEEEEEEECCEEEEEEEEECCCchhhHH
Confidence 3579999999999999999999854111000 0 0001 11112222222234589999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMP-QTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.....+..+|++++|+|+++.... .....+..+. ..++| +++|+||+|+.+..+.. .++..++.+.++
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 139 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREVS---SSEGRALAEEWG--- 139 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCSC---HHHHHHHHHHHT---
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccCC---HHHHHHHHHHhC---
Confidence 888888999999999999873221 1222222222 23677 77999999986532211 123344555543
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||+++ .|++++++.|.+.+
T Consensus 140 --~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 140 --CPFMETSAKSK----------TMVDELFAEIVRQM 164 (167)
T ss_dssp --SCEEEECTTCH----------HHHHHHHHHHHHHH
T ss_pred --CCEEEecCCCC----------cCHHHHHHHHHHHH
Confidence 47999999999 99999999987653
No 64
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.79 E-value=3.5e-19 Score=156.06 Aligned_cols=158 Identities=18% Similarity=0.095 Sum_probs=106.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
..++|+++|++|+|||||+++|.+.... . ...|+......+......+.+|||||+++|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~------------~-------~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 66 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV------------T-------TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRP 66 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC------------C-------CCCCSSEEEEEEEETTEEEEEEEECCCGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC------------C-------cCCcCccceEEEEECCEEEEEEECCCChhhhH
Confidence 3579999999999999999999753110 0 01122222333445678899999999999888
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.....+..+|++++|+|+++...- ...+.+..+.. .++| +++|+||+|+.+.... +.+. +.+.......
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~~~~----~~~~~~~~~~ 140 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQAMTS-SEMA----NSLGLPALKD 140 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-HHHH----HHHTGGGCTT
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCCCCH-HHHH----HHhCchhccC
Confidence 877888899999999999875432 22233333322 3666 7899999999864221 1122 2221111222
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
..++++++||+++ .|+++++++|.+.++
T Consensus 141 ~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 141 RKWQIFKTSATKG----------TGLDEAMEWLVETLK 168 (171)
T ss_dssp SCEEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred CceEEEECcCCCC----------cCHHHHHHHHHHHHh
Confidence 3468999999999 899999999987654
No 65
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=162.48 Aligned_cols=160 Identities=16% Similarity=0.109 Sum_probs=106.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHA 139 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~ 139 (451)
....++|+++|..|+|||||+++|++.... .+....++.+.....+...+ ..+.+|||||++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFC----------------EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCC----------------cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 345689999999999999999999743211 11111222333333333333 578999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
+|.......+..+|++++|+|+++....+. ...+..+... ++| +++|+||+|+.+..+.. .++..++.+.+.
T Consensus 87 ~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~~~~~v~---~~~~~~~~~~~~ 162 (192)
T 2il1_A 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREIT---RQQGEKFAQQIT 162 (192)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHTST
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC---HHHHHHHHHhcC
Confidence 999888888999999999999987433222 2233344332 566 78999999987532211 123444555431
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
..+++++||++| .|++++++.|.+.+
T Consensus 163 ----~~~~~~~SA~~g----------~gi~~l~~~l~~~i 188 (192)
T 2il1_A 163 ----GMRFCEASAKDN----------FNVDEIFLKLVDDI 188 (192)
T ss_dssp ----TCEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ----CCeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 368999999998 89999999887654
No 66
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.79 E-value=5.5e-19 Score=157.99 Aligned_cols=159 Identities=19% Similarity=0.141 Sum_probs=107.4
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEee-EEEeeeC-----------Cee
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA-HVEYETA-----------KRH 129 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~-----------~~~ 129 (451)
....++|+++|++|+|||||+++|.+...... ....+..+.. ...+... ...
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSK----------------FITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS----------------CCCCCSEEEEEEEEEECTTSCCCSSCCCEEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcC----------------cccccceeeeeEEEEEecCCcccccccCcEEE
Confidence 34568999999999999999999985421110 0011111211 1122222 357
Q ss_pred EEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHH
Q 013007 130 YAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVE 204 (451)
Q Consensus 130 i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~ 204 (451)
+.+|||||+++|.......+..+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.+..... .
T Consensus 72 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~ 147 (195)
T 3bc1_A 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRAVK---E 147 (195)
T ss_dssp EEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGCCSC---H
T ss_pred EEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccC---H
Confidence 8999999999999999999999999999999987433222 333333333 4677 78999999997522110 1
Q ss_pred HHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 205 MELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 205 ~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+++.++.+.++ ++++++||+++ .|++++++.|.+.+
T Consensus 148 ~~~~~~~~~~~-----~~~~~~Sa~~~----------~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 148 EEARELAEKYG-----IPYFETSAANG----------TNISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHHHHHHT-----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-----CCEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 23445555544 47999999998 89999998887654
No 67
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.79 E-value=1.1e-18 Score=151.84 Aligned_cols=156 Identities=18% Similarity=0.128 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|++|+|||||+++|.+.... +. ..|+......+...+..+.+|||||+++|....
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~------------~~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 61 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV------------TT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS------------CC-------CCCSSCCEEEEECSSCEEEEEECCCCGGGHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC------------cc-------cCcCceeEEEEEECCEEEEEEEcCCChhhHHHH
Confidence 48999999999999999999864211 00 011112223344567889999999999998888
Q ss_pred HHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
...+..+|++++|+|+++... ....+.+..+.. .++| +++|+||+|+.+... .+.+. +.+.........
T Consensus 62 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~~~----~~~~~~~~~~~~ 135 (164)
T 1r8s_A 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMN-AAEIT----DKLGLHSLRHRN 135 (164)
T ss_dssp HHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HHHHH----HHTTGGGCSSCC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCCC-HHHHH----HHhCcccccCcc
Confidence 888999999999999987432 122223332222 2566 789999999976321 11121 111111122234
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||+++ .|+++++++|.+.+.
T Consensus 136 ~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 136 WYIQATCATSG----------DGLYEGLDWLSNQLR 161 (164)
T ss_dssp EEEEECBTTTT----------BTHHHHHHHHHHHC-
T ss_pred EEEEEcccCCC----------cCHHHHHHHHHHHHh
Confidence 68999999998 899999999988764
No 68
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.78 E-value=4e-19 Score=157.82 Aligned_cols=157 Identities=17% Similarity=0.119 Sum_probs=104.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|+++|+.|+|||||+++|.+... .... ...|.+ ...+...+..+.+|||||+++|.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~------~~~~---------~t~~~~----~~~~~~~~~~~~i~Dt~G~~~~~ 79 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV------VHTS---------PTIGSN----VEEIVINNTRFLMWDIGGQESLR 79 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC------EEEE---------CCSSSS----CEEEEETTEEEEEEEESSSGGGT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC------CccC---------CcCcee----eEEEEECCEEEEEEECCCCHhHH
Confidence 4468999999999999999999985411 0000 001221 12234467889999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......+..+|++++|+|+++...- ...+.+..+.. .++| +++|+||+|+.+... .+ ++.+.+......
T Consensus 80 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~ 153 (181)
T 2h17_A 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMT-VA----EISQFLKLTSIK 153 (181)
T ss_dssp CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCcccCCC-HH----HHHHHhCccccc
Confidence 8777888999999999999886432 23333333332 4566 789999999976311 11 222222211122
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
...++++++||+++ .|+++++++|.+.
T Consensus 154 ~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~ 180 (181)
T 2h17_A 154 DHQWHIQACCALTG----------EGLCQGLEWMMSR 180 (181)
T ss_dssp SSCEEEEECBTTTT----------BTHHHHHHHHHTC
T ss_pred CCceEEEEccCCCC----------cCHHHHHHHHHhh
Confidence 23468999999998 8999999998753
No 69
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.78 E-value=4.5e-19 Score=157.95 Aligned_cols=159 Identities=19% Similarity=0.144 Sum_probs=107.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
++.++|+++|++|+|||||+++|++.. .. . . ..|+......+..++..+.+|||||+++|.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~-----------~-----~--~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VD-----------T-----I--SPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 76 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CS-----------S-----C--CCCSSEEEEEEEETTEEEEEEEECCSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CC-----------c-----c--cccCccceEEEEECCEEEEEEECCCCHhHH
Confidence 456899999999999999999998531 00 0 0 112222223344467889999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......+..+|++++|+|+++... ....+.+..+.. .++| +++|+||+|+.+... .+ ++.+.+......
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~~~~~~~~~~~~ 150 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPGALS-CN----AIQEALELDSIR 150 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCC
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCCCC-HH----HHHHHhChhhcc
Confidence 888888899999999999987532 222233333322 3566 789999999976322 11 222222211122
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
....+++++||+++ .|++++++.|.+.++
T Consensus 151 ~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 151 SHHWRIQGCSAVTG----------EDLLPGIDWLLDDIS 179 (186)
T ss_dssp SSCEEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred CCceEEEEeeCCCC----------CCHHHHHHHHHHHHH
Confidence 23568999999998 899999999987664
No 70
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.78 E-value=2.8e-19 Score=157.78 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=107.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
.+.++|+++|+.|+|||||+++|++.... ......++.+.....+...+ ..+.+|||||+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 75 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCC----------------SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHH
Confidence 34689999999999999999999843111 11112333333333333333 5789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
|.......+..+|++++|+|+++... ......+..+.. .++| +++|+||+|+.++.+.. .++...+.+..+
T Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 150 (179)
T 2y8e_A 76 FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVS---TEEGERKAKELN- 150 (179)
T ss_dssp GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGGGGCCSC---HHHHHHHHHHHT-
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccCcCC---HHHHHHHHHHcC-
Confidence 98888888889999999999986322 222233333322 3566 78999999987532110 122334444443
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++++||+++ .|++++++.|.+.++
T Consensus 151 ----~~~~~~Sa~~~----------~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 151 ----VMFIETSAKAG----------YNVKQLFRRVAAALP 176 (179)
T ss_dssp ----CEEEEEBTTTT----------BSHHHHHHHHHHTCC
T ss_pred ----CeEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 57999999998 899999999988765
No 71
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=3.3e-19 Score=161.52 Aligned_cols=160 Identities=18% Similarity=0.091 Sum_probs=107.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHA 139 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~ 139 (451)
....++|+++|.+|+|||||+++|.+..... +....++.+.....+..++ ..+.||||||++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPP----------------GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCT----------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 3457899999999999999999998542111 1111222333223333333 578999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
+|......+++.+|++++|+|+++.... .....+..+.. .++| +++|+||+|+.+..+.. .++..++.+..+
T Consensus 87 ~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~~ 162 (201)
T 2ew1_A 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLAERREVS---QQRAEEFSEAQD 162 (201)
T ss_dssp GGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCSSC---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC---HHHHHHHHHHcC
Confidence 9998888889999999999999874321 12233333333 2456 77899999997422110 123334444443
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++++||++| .|++++++.|.+.+.
T Consensus 163 -----~~~~~~Sa~~g----------~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 163 -----MYYLETSAKES----------DNVEKLFLDLACRLI 188 (201)
T ss_dssp -----CCEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred -----CEEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999998 899999988876553
No 72
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.78 E-value=2.7e-19 Score=160.53 Aligned_cols=161 Identities=19% Similarity=0.136 Sum_probs=108.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
....++|+++|++|+|||||+++|++....... ....|.+.......+......+.||||||+++|
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS--------------RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY 87 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC--------------CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEeCCCchhh
Confidence 345689999999999999999999854211000 011133333333333334567899999999998
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
.......+..+|++++|+|+++... ......+..+... ++| +++|+||+|+.+.... ..++...+.+..+
T Consensus 88 ~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 161 (193)
T 2oil_A 88 RAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIV-VMLVGNKSDLSQAREV---PTEEARMFAENNG-- 161 (193)
T ss_dssp CTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCE-EEEEEECGGGGGGCCS---CHHHHHHHHHHTT--
T ss_pred hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECCCccccccc---CHHHHHHHHHHcC--
Confidence 8878888899999999999987432 1223333344332 556 7899999999753211 0123445555543
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||+++ .|++++++.|.+.+
T Consensus 162 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~i 186 (193)
T 2oil_A 162 ---LLFLETSALDS----------TNVELAFETVLKEI 186 (193)
T ss_dssp ---CEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 89999999887643
No 73
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.78 E-value=1.4e-18 Score=156.43 Aligned_cols=163 Identities=13% Similarity=0.144 Sum_probs=103.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEE--ee-eCCeeEEEEecCCh
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE--YE-TAKRHYAHVDCPGH 138 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~--~~-~~~~~i~iiDtPG~ 138 (451)
.+..++|+++|..|+|||||++.|.+.... +...+.+....... +. .....+.+|||||+
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 79 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSP-----------------NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 79 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCG-----------------GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCC-----------------cceeeeccccceeeeeccCCCeeEEEEEECCCC
Confidence 455789999999999999999988742110 01112222222222 22 34478999999999
Q ss_pred HHHHHHH---HHhcccCCEEEEEEeCCCCCCccHHHHHHHHHH-----cCCCeEEEEEeeccCCChHHHH---HHHHHH-
Q 013007 139 ADYVKNM---ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELL---ELVEME- 206 (451)
Q Consensus 139 ~~~~~~~---~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~-----~~ip~iivviNK~D~~~~~~~~---~~~~~~- 206 (451)
++|.... ...++.+|++|+|+|+++............+.. .++| +++|.||+|+.+++... ..+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~v~~~~ 158 (196)
T 3llu_A 80 MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKVDGLSDDHKIETQRDIHQRA 158 (196)
T ss_dssp CCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEeccccCchhhhhHHHhHHHHHH
Confidence 9987666 677888999999999998633332333333332 2666 78999999998744322 222222
Q ss_pred HHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 207 ~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
..++.+ .......++++++||++ .|+.++++.|.+.
T Consensus 159 ~~~~~~-~~~~~~~~~~~e~Sa~~-----------~~v~~~f~~l~~~ 194 (196)
T 3llu_A 159 NDDLAD-AGLEKLHLSFYLTSIYD-----------HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHHHH-TTCTTSCEEEEEECTTS-----------THHHHHHHHHHHH
T ss_pred HHHHHH-hhhhcCCcceEEEEech-----------hhHHHHHHHHHHH
Confidence 233333 22222357899999976 4788888888764
No 74
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.78 E-value=4.2e-19 Score=160.53 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=106.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
..++|+++|++|+|||||+++|++...... .....|.+.......+......+.||||||+++|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 72 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPA--------------FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT 72 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSC--------------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC--------------cCCccceeEEEEEEEECCeEEEEEEEECCCchhhcc
Confidence 468999999999999999999985311100 001113333333333333346789999999999999
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
.....+..+|++++|+|+++.... .....+..+.. .++| +++|+||+|+.+..... .++..++.+.++
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 144 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDERVVS---SERGRQLADHLG---- 144 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSCCSC---HHHHHHHHHHHT----
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCcccccC---HHHHHHHHHHCC----
Confidence 888899999999999999874321 12233333333 2566 78999999997532211 123445555554
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||+++ .|+.+++++|.+.+
T Consensus 145 -~~~~~~Sa~~~----------~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 145 -FEFFEASAKDN----------INVKQTFERLVDVI 169 (203)
T ss_dssp -CEEEECBTTTT----------BSSHHHHHHHHHHH
T ss_pred -CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 47999999998 77777777766543
No 75
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.78 E-value=9.8e-20 Score=171.10 Aligned_cols=151 Identities=22% Similarity=0.221 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH--
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK-- 143 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~-- 143 (451)
++|+++|++|+|||||+|+|++.... .....|+|++.....+...+..+.||||||+.++..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~----------------v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 65 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR----------------VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE----------------EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC----------------ccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccc
Confidence 48999999999999999999854211 111237787777777777888999999999877643
Q ss_pred --------HHHHhc--ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 144 --------NMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 144 --------~~~~~~--~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
.....+ ..+|++++|+|+++ ..........+...++| +++|+||+|+.+.... ......+.+.
T Consensus 66 ~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~Dl~~~~~~----~~~~~~l~~~ 138 (256)
T 3iby_A 66 EGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMDIAEHRGI----SIDTEKLESL 138 (256)
T ss_dssp ---CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHHHHHHTTC----EECHHHHHHH
T ss_pred cCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChhcCCcCCc----HHHHHHHHHH
Confidence 122233 67999999999987 23334445556667889 7799999998642211 1112233444
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
++ +|++++||++| .|+++|++.|.+.
T Consensus 139 lg-----~~vi~~SA~~g----------~gi~el~~~i~~~ 164 (256)
T 3iby_A 139 LG-----CSVIPIQAHKN----------IGIPALQQSLLHC 164 (256)
T ss_dssp HC-----SCEEECBGGGT----------BSHHHHHHHHHTC
T ss_pred cC-----CCEEEEECCCC----------CCHHHHHHHHHhh
Confidence 43 58999999999 9999999999876
No 76
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.78 E-value=5.2e-19 Score=154.18 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=104.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEE-eeEEEeeeCCeeEEEEecCChHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA-TAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+.++|+++|++|+|||||+++|.+....... ...+... .....+......+.+|||||+++|.
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKY----------------DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSC----------------CCCSEEEEEEEEESSSCEEEEEEEEECSSCSST
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCCccceEEEEEEECCEEEEEEEEECCChHHHH
Confidence 3579999999999999999999853111000 0011111 1122233334578999999999988
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......+..+|++++|+|+++... ......+..+.. .++| +++|+||+|+.++.... .++..++.+.++
T Consensus 66 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 139 (167)
T 1c1y_A 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVG---KEQGQNLARQWC-- 139 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHTT--
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccccCC---HHHHHHHHHHcc--
Confidence 888888889999999999987321 122223322222 3677 77999999997532110 123444555542
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
..+++++||++| .|++++++.|.+.+
T Consensus 140 --~~~~~~~Sa~~~----------~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 140 --NCAFLESSAKSK----------INVNEIFYDLVRQI 165 (167)
T ss_dssp --SCEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CCcEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 368999999998 89999999987654
No 77
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.78 E-value=1.8e-19 Score=161.10 Aligned_cols=160 Identities=14% Similarity=0.114 Sum_probs=109.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+..++|+++|.+|+|||||+++|++....... ....|.+.......+......+.+|||||+++|.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 85 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAF--------------VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR 85 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--------------CCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCc--------------CCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh
Confidence 34689999999999999999999854211000 0111334433333333334678999999999988
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
......+..+|++++|+|+++... ......+..+... ++| +++|+||+|+.+..... .++..++.+.++
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 158 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDERVVP---AEDGRRLADDLG--- 158 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT---
T ss_pred hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccCCC---HHHHHHHHHHcC---
Confidence 777788889999999999987432 2233344444443 566 78999999997532110 123445555554
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||+++ .|++++++.|.+.+
T Consensus 159 --~~~~~~Sa~~g----------~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 159 --FEFFEASAKEN----------INVKQVFERLVDVI 183 (189)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 47999999998 89999999987754
No 78
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.78 E-value=8.7e-19 Score=155.90 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=107.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
...++|+++|++|+|||||+++|.+.... ......++.+.....+..++ ..+.+|||||+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 71 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFK----------------DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC----------------TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 44689999999999999999999854211 11112233333333333444 5789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
|.......+..+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.+..... .++..++.+..+
T Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 146 (186)
T 2bme_A 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLDADREVT---FLEASRFAQENE- 146 (186)
T ss_dssp GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC---HHHHHHHHHHcC-
Confidence 99988889999999999999987432222 222322222 3566 78999999996421110 123344555543
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++++||+++ .|+.++++.|.+.+.
T Consensus 147 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 147 ----LMFLETSALTG----------ENVEEAFVQCARKIL 172 (186)
T ss_dssp ----CEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred ----CEEEEecCCCC----------CCHHHHHHHHHHHHH
Confidence 58999999998 889999988876543
No 79
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.78 E-value=5.9e-19 Score=155.21 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=98.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH--
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY-- 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~-- 141 (451)
..++|+++|++|+|||||+++|.+..... .....|.+.......+......+.+|||||++++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 67 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERD---------------LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDK 67 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC--------------------CCCSSSSEEEEEEEETTEEEEEEEECCC-------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcc---------------ccCccccceeEEEEEECCEEEEEEEEecCCCCccch
Confidence 46799999999999999999998532110 0111244443333333333357889999999884
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHHc----CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV----GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~~----~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
.......++.+|++++|+|+++...- ...+.+..+... ++| +++|+||+|+.+..+.. .++...+...++
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~~- 142 (175)
T 2nzj_A 68 SWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLARCREVS---VEEGRACAVVFD- 142 (175)
T ss_dssp CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCTTTCCSC---HHHHHHHHHHHT-
T ss_pred hhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhccccccC---HHHHHHHHHHcC-
Confidence 34444566789999999999863221 222333334433 677 77999999997532211 112334444443
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||++| .|++++++.|.+.+
T Consensus 143 ----~~~~~~Sa~~g----------~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 143 ----CKFIETSATLQ----------HNVAELFEGVVRQL 167 (175)
T ss_dssp ----SEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ----CeEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 89999999987755
No 80
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.78 E-value=8.7e-19 Score=157.93 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=77.7
Q ss_pred eeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH-cCCCeEEEEEeeccCCChHHHHHHHHH
Q 013007 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-VGVPSLVCFLNKVDLVEDEELLELVEM 205 (451)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~-~~ip~iivviNK~D~~~~~~~~~~~~~ 205 (451)
..+.||||||+++|...+...+..+|++++|+|++++...+. ...+..+.. .+.| +++|+||+|+...... .+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~~----~~ 167 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI-IILVANKIDKNKFQVD----IL 167 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCSC----HH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc-EEEEEECCCcccccCC----HH
Confidence 678999999999998888888999999999999987543222 223333333 4555 8899999994221111 12
Q ss_pred HHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 206 ELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 206 ~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++.++++..+ ++++++||+++ .|+.+++++|.+.+
T Consensus 168 ~~~~~~~~~~-----~~~~~~Sa~~~----------~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 168 EVQKYAQDNN-----LLFIQTSAKTG----------TNIKNIFYMLAEEI 202 (208)
T ss_dssp HHHHHHHHTT-----CEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----CcEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 4455666543 58999999998 89999999887654
No 81
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.78 E-value=2.1e-18 Score=159.17 Aligned_cols=164 Identities=12% Similarity=0.100 Sum_probs=106.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh----
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH---- 138 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~---- 138 (451)
...++|+++|.+|+|||||+++|++.... . ....+.|.+.....+...+..+.||||||+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-------~---------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 90 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-------V---------QSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-------E---------ECC-----CEEEEEEEETTEEEEEEECTTTTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------c---------CCCCCcceeeeeeeeecCCCeEEEEECCCCcCcc
Confidence 34579999999999999999999853110 0 011234444444445556788999999998
Q ss_pred --HHH---HHHHHHhcccCCEEEEEEeCCCCCCccH---HHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHHHHHH
Q 013007 139 --ADY---VKNMITGAAQMDGGILVVSAPDGPMPQT---KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELR 208 (451)
Q Consensus 139 --~~~---~~~~~~~~~~~d~~ilVvda~~g~~~~t---~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~~~~~ 208 (451)
+.. ...+......+|++++|+|+++...... .+.+..+... ++| +++|+||+|+.+..+......+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~ 169 (228)
T 2qu8_A 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFNKIDKCNMDSLSIDNKLLIK 169 (228)
T ss_dssp GGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEECGGGCC--CCCHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEeCcccCCchhhHHHHHHHHH
Confidence 331 1222334567899999999998654332 2344444444 677 7899999999864332222233455
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++.+..+ ...+++++||++| .|++++++.|.+.+.
T Consensus 170 ~~~~~~~---~~~~~~~~SA~~g----------~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 170 QILDNVK---NPIKFSSFSTLTG----------VGVEQAKITACELLK 204 (228)
T ss_dssp HHHHHCC---SCEEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred HHHHhcC---CCceEEEEecccC----------CCHHHHHHHHHHHHH
Confidence 5555543 1268999999999 899999998877553
No 82
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.78 E-value=2.2e-19 Score=156.72 Aligned_cols=159 Identities=15% Similarity=0.174 Sum_probs=104.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
..++|+++|++|+|||||+++|.+....... ....+.+.......+......+.+|||||+++|..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 69 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDY--------------KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCS--------------SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCC--------------CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH
Confidence 4679999999999999999999854211000 00012222222222222235789999999999877
Q ss_pred HHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH--cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
.....+..+|++++|+|+++... ......+..+.. .+.| +++|+||+|+.++.+.. .+++.++.+.++
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~----- 140 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSCIK---NEEAEGLAKRLK----- 140 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCSSC---HHHHHHHHHHHT-----
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCcccccC---HHHHHHHHHHcC-----
Confidence 77778889999999999987432 222233333322 3677 77999999987532110 123445555544
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||+++ .|++++++.|.+.+
T Consensus 141 ~~~~~~Sa~~~----------~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 141 LRFYRTSVKED----------LNVSEVFKYLAEKH 165 (168)
T ss_dssp CEEEECBTTTT----------BSSHHHHHHHHHHH
T ss_pred CeEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 47999999998 88899998887643
No 83
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.78 E-value=1.7e-19 Score=162.81 Aligned_cols=165 Identities=13% Similarity=0.115 Sum_probs=105.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
.+..++|+++|++|+|||||+++|++..... ......|.+.......+......+.||||||+++|
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 90 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE--------------NISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF 90 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEEEEEETTEEEEEEEEECTTCTTC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCc--------------cCCCCccceeEEEEEEECCEEEEEEEEECCCCcch
Confidence 3456899999999999999999998541100 00011133333333334333466899999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHH---cCCCeEEEEEeeccCCChHHH--HH-HHHHHHHHHHHhc
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVCFLNKVDLVEDEEL--LE-LVEMELRELLSFY 214 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~--~~-~~~~~~~~~l~~~ 214 (451)
.......+..+|++++|+|+++....+ ....+..+.. .++| +++|+||+|+.+.... .. ...++..++.+.+
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~ 169 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTY 169 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccccccccCHHHHHHHHHHc
Confidence 988888899999999999998743322 2233333333 2677 7899999998632110 00 0112334455554
Q ss_pred CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 215 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+ ++++++||+++ .|++++++.|.+.+.
T Consensus 170 ~-----~~~~~~SA~~g----------~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 170 G-----ALFCETSAKDG----------SNIVEAVLHLAREVK 196 (199)
T ss_dssp T-----CEEEECCTTTC----------TTHHHHHHHHHHHHT
T ss_pred C-----CeEEEeeCCCC----------CCHHHHHHHHHHHHH
Confidence 3 57999999998 899999999987653
No 84
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.78 E-value=2.2e-19 Score=160.89 Aligned_cols=161 Identities=16% Similarity=0.107 Sum_probs=106.3
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
....++|+++|+.|+|||||+++|.+...... .....|.+.......+......+.||||||+++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 83 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------HDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 83 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCSSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCC--------------CCCcccceeEEEEEEECCEEEEEEEEECCCchhh
Confidence 34568999999999999999999985411000 0011122333333333222357899999999998
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
.......+..+|++++|+|+++... ......+..+... ++| +++|+||+|+.+..+.. .++..++.+..+
T Consensus 84 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~-- 157 (191)
T 2a5j_A 84 RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRDVK---REEGEAFAREHG-- 157 (191)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT--
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCCccccC---HHHHHHHHHHcC--
Confidence 7777778889999999999987432 2223333344432 566 78999999996422110 123444555543
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||+++ .|++++++.|.+.+
T Consensus 158 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 158 ---LIFMETSAKTA----------CNVEEAFINTAKEI 182 (191)
T ss_dssp ---CEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 47999999998 89999998887654
No 85
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=7.2e-19 Score=157.81 Aligned_cols=163 Identities=18% Similarity=0.124 Sum_probs=108.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+..++|+++|+.|+|||||+++|.+........ +. .+... .....+......+.+|||||+++|.
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~-----------~t---~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~ 80 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYV-----------PT---VFDHY-AVSVTVGGKQYLLGLYDTAGQEDYD 80 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCC-----------CS---SCCCE-EEEEESSSCEEEEEEECCCCSSSST
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC-----------Cc---cccee-EEEEEECCEEEEEEEEECCCCcchh
Confidence 456899999999999999999998542110000 00 01111 1112222223578999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccH-H-HHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHH---------HHHHHH
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQT-K-EHILLARQV--GVPSLVCFLNKVDLVEDEELLELV---------EMELRE 209 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t-~-~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~---------~~~~~~ 209 (451)
......+..+|++++|+|+++...-+. . ..+..+... ++| +++|+||+|+.+.....+.+ .++..+
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (194)
T 2atx_A 81 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcccccchhhcccccCcccCHHHHHH
Confidence 777788889999999999987432222 2 233444443 677 77999999998643322111 234455
Q ss_pred HHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 210 ~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+.+.+++ .+++++||++| .|++++++.|.+.+
T Consensus 160 ~~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 191 (194)
T 2atx_A 160 LAKEIGA----CCYVECSALTQ----------KGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHTC----SCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred HHHHcCC----cEEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 6666543 48999999999 89999999987754
No 86
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.78 E-value=3.1e-19 Score=158.54 Aligned_cols=158 Identities=15% Similarity=0.073 Sum_probs=83.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
...++|+++|++|+|||||+++|++.... .+...+++.+.....+..++ ..+.||||||+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN----------------STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp SEEEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 35689999999999999999999843211 11122333333333333444 6789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
|.......+..+|++++|+|+++... ......+..+... ++| +++|+||+|+.+..... .++..++.+.++
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~- 144 (183)
T 2fu5_C 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKRQVS---KERGEKLALDYG- 144 (183)
T ss_dssp ----CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCCCSC---HHHHHHHHHHHT-
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCCccCcCC---HHHHHHHHHHcC-
Confidence 98877778889999999999987432 2222333334332 566 78999999997532110 123445555544
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||+++ .|++++++.|.+.+
T Consensus 145 ----~~~~~~Sa~~~----------~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 145 ----IKFMETSAKAN----------INVENAFFTLARDI 169 (183)
T ss_dssp ----CEEEECCC-------------CCHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 88999998887654
No 87
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.78 E-value=9e-19 Score=152.56 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=101.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
+.++|+++|++|+|||||+++|.+...... ..+ ..+.+. .....+......+.+|||||+++|..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----------~~~---t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVED-----------YEP---TKADSY-RKKVVLDGEEVQIDILDTAGQEDYAA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSC-----------CCT---TCCEEE-EEEEEETTEEEEEEEEECCC---CHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCC-----------CCC---CcceEE-EEEEEECCEEEEEEEEECCCcchhHH
Confidence 458999999999999999999985421000 000 001111 11122222235789999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.....+..+|++++|+|+++..... ....+..+.. .++| +++|+||+|+.+..+. ..++..++++.++
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 140 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRADQWN--- 140 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGGCCS---CHHHHHHHHHHHT---
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccccccCcc---CHHHHHHHHHHcC---
Confidence 8888899999999999998632211 1222222222 2677 7799999998753221 0123445555543
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||+++ .|+++++++|.+.+
T Consensus 141 --~~~~~~Sa~~~----------~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 141 --VNYVETSAKTR----------ANVDKVFFDLMREI 165 (168)
T ss_dssp --CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred --CeEEEeCCCCC----------CCHHHHHHHHHHHH
Confidence 47999999998 89999999987654
No 88
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.78 E-value=5.5e-19 Score=156.29 Aligned_cols=161 Identities=19% Similarity=0.141 Sum_probs=95.8
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC---CeeEEEEecCCh
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA---KRHYAHVDCPGH 138 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~i~iiDtPG~ 138 (451)
.+..++|+++|+.|+|||||+++|.+.... .+....++.+.....+... ...+.+|||||+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYS----------------QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCC----------------TTC---CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCC----------------cccCCccceEEEEEEEEEcCCcEEEEEEEECCCC
Confidence 345789999999999999999999854211 0111112222222223322 457899999999
Q ss_pred HHHHHHHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHH-------cCCCeEEEEEeeccCCChHHHHHHHHHHHHHH
Q 013007 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ-------VGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (451)
Q Consensus 139 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~-------~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (451)
++|.......+..+|++++|+|+++....+ ....+..+.. .++| +++|+||+|+.+.+... ..++..++
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~v--~~~~~~~~ 145 (182)
T 1ky3_A 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDAEESKKIV--SEKSAQEL 145 (182)
T ss_dssp --------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTSCGGGCCS--CHHHHHHH
T ss_pred hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCccccccccC--CHHHHHHH
Confidence 999888888889999999999998743222 2222222222 4667 77999999996432110 01233444
Q ss_pred HHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+.. ...+++++||++| .|++++++.|.+.+
T Consensus 146 ~~~~----~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 146 AKSL----GDIPLFLTSAKNA----------INVDTAFEEIARSA 176 (182)
T ss_dssp HHHT----TSCCEEEEBTTTT----------BSHHHHHHHHHHHH
T ss_pred HHhc----CCCeEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 4432 2468999999998 89999999887654
No 89
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.78 E-value=4.2e-19 Score=157.66 Aligned_cols=158 Identities=19% Similarity=0.188 Sum_probs=104.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHA 139 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~ 139 (451)
..+.++|+++|++|+|||||+++|++....... ...+.... ...+...+ ..+.+|||||++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~----------------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY----------------DPTIEDSY-LKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----------------CTTCCEEE-EEEEEETTEEEEEEEEECCSCG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC----------------CCCcccee-EEEEEeCCcEEEEEEEECCCch
Confidence 456789999999999999999999843111000 00111111 12222333 446779999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHH----HHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhc
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLA----RQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~----~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~ 214 (451)
+|.......+..+|++++|+|+++.... .....+..+ ...++| +++|+||+|+.+..... .++..++.+.+
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~v~---~~~~~~~~~~~ 153 (183)
T 3kkq_A 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLRKVT---RDQGKEMATKY 153 (183)
T ss_dssp GGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTCCSC---HHHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhccCcC---HHHHHHHHHHh
Confidence 9887777888899999999999874221 122222222 234677 77999999987522211 12344555655
Q ss_pred CCCCCCCCeeecccc-ccccCCCcccchhhHHHHHHHHHhhC
Q 013007 215 KFPGDEIPIIRGSAT-SALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 215 ~~~~~~~pvi~~Sa~-~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+ .+++++||+ ++ .|++++++.|.+.+
T Consensus 154 ~-----~~~~~~Sa~~~~----------~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 154 N-----IPYIETSAKDPP----------LNVDKTFHDLVRVI 180 (183)
T ss_dssp T-----CCEEEEBCSSSC----------BSHHHHHHHHHHHH
T ss_pred C-----CeEEEeccCCCC----------CCHHHHHHHHHHHH
Confidence 4 579999999 88 89999999987653
No 90
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.78 E-value=4.1e-19 Score=155.47 Aligned_cols=160 Identities=19% Similarity=0.126 Sum_probs=99.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|+++|++|+|||||+++|++....... ....+.+.......+......+.+|||||+++|.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 69 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKH--------------ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH 69 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSC--------------CCCCSCEEEEEEEESSSCEEEEEEEECCCC----
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCC--------------CCccceEEEEEEEEECCEEEEEEEEECCCcHhhh
Confidence 45689999999999999999999854211000 0001222222222232233578899999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
......+..+|++++|+|+++....+ ....+..+.. .++| +++|+||+|+.++.... .++..++.+.++
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 142 (170)
T 1z08_A 70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERHVS---IQEAESYAESVG--- 142 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT---
T ss_pred hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccccC---HHHHHHHHHHcC---
Confidence 88777888999999999998743212 2222223322 3566 77999999997532110 123445555543
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||+++ .|++++++.|.+.+
T Consensus 143 --~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 143 --AKHYHTSAKQN----------KGIEELFLDLCKRM 167 (170)
T ss_dssp --CEEEEEBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 89999999987754
No 91
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=157.11 Aligned_cols=160 Identities=17% Similarity=0.140 Sum_probs=107.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
...++|+++|.+|+|||||+++|.+.... .+....++.+.....+..++ ..+.||||||+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFS----------------ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------CEEEEEEEETTEEEEEEEECCTTCGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCC----------------CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 45689999999999999999999854111 01111122222223333344 5789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
|.......+..+|++++|+|+++... ......+..+.. .++| +++|+||+|+.+.... -.+++.++++.+++
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v---~~~~~~~~~~~~~~ 166 (201)
T 2hup_A 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDLSELREV---SLAEAQSLAEHYDI 166 (201)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCS---CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCcccccccc---CHHHHHHHHHHcCC
Confidence 99888888999999999999986322 222333334433 3466 7799999999752111 01244556666543
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||+++ .|++++++.|.+.+.
T Consensus 167 ----~~~~~~SA~~g----------~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 167 ----LCAIETSAKDS----------SNVEEAFLRVATELI 192 (201)
T ss_dssp ----SEEEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 38999999998 899999999887654
No 92
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=1.7e-18 Score=175.41 Aligned_cols=154 Identities=21% Similarity=0.209 Sum_probs=111.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH-----
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD----- 140 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~----- 140 (451)
.+|+++|.+|+|||||+|+|++.. .+ ..+...|+|.+.....+.+.+..+.+|||||++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~------~~---------~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 66 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKK------KA---------IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI 66 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC------Cc---------eecCCCCCccceeeEEEEECCeEEEEEECCCccccccch
Confidence 379999999999999999998531 11 1122347787776677777889999999999653
Q ss_pred ----HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHH-HHHHHhcC
Q 013007 141 ----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMEL-RELLSFYK 215 (451)
Q Consensus 141 ----~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~-~~~l~~~~ 215 (451)
+...+..++..+|++++|+|++++......+...+++..++| +++|+||+|+.+. . ..+. .++. .++
T Consensus 67 ~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p-~ilv~NK~D~~~~--~----~~~~~~~~~-~lg 138 (439)
T 1mky_A 67 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVD-TILVANKAENLRE--F----EREVKPELY-SLG 138 (439)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCC-EEEEEESCCSHHH--H----HHHTHHHHG-GGS
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCCccc--c----HHHHHHHHH-hcC
Confidence 455566778899999999999998887777777777777888 7799999998521 1 1122 2332 344
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+ .+++++||++| .|+.+|++.+.+.++
T Consensus 139 ~----~~~~~iSA~~g----------~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 139 F----GEPIPVSAEHN----------INLDTMLETIIKKLE 165 (439)
T ss_dssp S----CSCEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred C----CCEEEEeccCC----------CCHHHHHHHHHHhcc
Confidence 4 36899999999 899999999988776
No 93
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.77 E-value=9.4e-19 Score=155.90 Aligned_cols=156 Identities=16% Similarity=0.109 Sum_probs=100.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADY 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~ 141 (451)
..++|+++|++|+|||||+++|.+...... ..+.+.+.....+...+ ..+.||||||+++|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 65 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDE-----------------YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCC-----------------CCTTCCEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------CCCCchheEEEEEEECCcEEEEEEEECCCcHHH
Confidence 468999999999999999999985421000 00111111112222333 45778999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
.......+..+|++++|+|+++....+ ....+..+.. .++| +++|+||+|+.+..... +...++.+.++
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~----~~~~~~~~~~~- 139 (189)
T 4dsu_A 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRTVDT----KQAQDLARSYG- 139 (189)
T ss_dssp CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCSSCH----HHHHHHHHHHT-
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccccCH----HHHHHHHHHcC-
Confidence 888888888999999999998742211 1222222222 3677 77999999997532211 23344555543
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||++| .|++++++.|.+.+.
T Consensus 140 ----~~~~~~Sa~~g----------~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 140 ----IPFIETSAKTR----------QGVDDAFYTLVREIR 165 (189)
T ss_dssp ----CCEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 47999999998 899999988877553
No 94
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.77 E-value=5.3e-19 Score=154.72 Aligned_cols=153 Identities=22% Similarity=0.231 Sum_probs=100.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH--
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV-- 142 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~-- 142 (451)
..+|+++|++|+|||||+++|++..... +...++|++.....+...+..+.+|||||+.+|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 66 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYI----------------GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN 66 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSC----------------C-----CCCCCEEEEEETTEEEEEEECCCCSCSSSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeec----------------cCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCc
Confidence 4799999999999999999998531110 1112445544444455567889999999987763
Q ss_pred ----HHHHHhc--ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 143 ----KNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 143 ----~~~~~~~--~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
.....++ ..+|++++|+|+++. ......+..+...++| +++|.||+|+...... ..+..++.+.++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~- 138 (165)
T 2wji_A 67 SIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGAN-LLLALNKMDLAKSLGI----EIDVDKLEKILG- 138 (165)
T ss_dssp SHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCC-EEEEEECHHHHHHTTC----CCCHHHHHHHHT-
T ss_pred chhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCC-EEEEEEchHhccccCh----hhHHHHHHHHhC-
Confidence 1112233 379999999999762 2233344455556888 7799999998532110 012233444443
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||++| .|++++++.|.+.+
T Consensus 139 ----~~~~~~SA~~~----------~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 ----VKVVPLSAAKK----------MGIEELKKAISIAV 163 (165)
T ss_dssp ----SCEEECBGGGT----------BSHHHHHHHHHHHT
T ss_pred ----CCEEEEEcCCC----------CCHHHHHHHHHHHh
Confidence 57999999999 89999999998754
No 95
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1e-18 Score=152.96 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=105.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
.++|+++|++|+|||||+++|.+........ ...+.+.. ...........+.+|||||+++|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------------~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~ 67 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYI--------------PTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAM 67 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCC--------------CCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------------CCccccEE-EEEEECCEEEEEEEEECCCchhhHHH
Confidence 5799999999999999999998531110000 00011111 11222222356899999999999888
Q ss_pred HHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH-----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
....+..+|++++|+|+++... ......+..+.. .++| +++|+||+|+.+..+.. ..+...+.+.++
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~~v~---~~~~~~~~~~~~--- 140 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSREVQ---SSEAEALARTWK--- 140 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGCCSC---HHHHHHHHHHHT---
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccccccC---HHHHHHHHHHhC---
Confidence 8888899999999999986422 223333433333 2577 77999999987532211 112334444443
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
.+++++||+++ .|+++++++|.+.+..
T Consensus 141 --~~~~~~Sa~~~----------~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 141 --CAFMETSAKLN----------HNVKELFQELLNLEKR 167 (172)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHTCCS
T ss_pred --CeEEEecCCCC----------cCHHHHHHHHHHHHhh
Confidence 57999999998 8999999999987653
No 96
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.77 E-value=4.1e-19 Score=159.54 Aligned_cols=165 Identities=16% Similarity=0.098 Sum_probs=107.2
Q ss_pred ccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe-eEEEeeeCCeeEEEEecCCh
Q 013007 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT-AHVEYETAKRHYAHVDCPGH 138 (451)
Q Consensus 60 ~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~i~iiDtPG~ 138 (451)
...+..++|+++|.+|+|||||+++|++....... ...+.... ....+......+.+|||||+
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~ 81 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAY----------------VPTVFENFSHVMKYKNEEFILHLWDTAGQ 81 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC----------------CCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCcc----------------CCeeeeeeEEEEEECCEEEEEEEEECCCc
Confidence 34556789999999999999999999854211000 00111111 11222222345699999999
Q ss_pred HHHHHHHHHhcccCCEEEEEEeCCCCCCccH--HHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhc
Q 013007 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (451)
Q Consensus 139 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t--~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~ 214 (451)
++|.......+..+|++++|+|+++...... ...+..+... ++| +++|+||+|+.++... ....++..++.+.+
T Consensus 82 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~ 159 (194)
T 3reg_A 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDGSD-DVTKQEGDDLCQKL 159 (194)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTTTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCCCC-cccHHHHHHHHHhc
Confidence 9998888888999999999999987432222 2223333332 566 7899999999752111 01123455666666
Q ss_pred CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 215 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++ .+++++||++| .|++++++.|.+.+.
T Consensus 160 ~~----~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 160 GC----VAYIEASSVAK----------IGLNEVFEKSVDCIF 187 (194)
T ss_dssp TC----SCEEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred CC----CEEEEeecCCC----------CCHHHHHHHHHHHHH
Confidence 54 34999999999 899999999887653
No 97
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.77 E-value=5.3e-19 Score=160.19 Aligned_cols=160 Identities=18% Similarity=0.102 Sum_probs=104.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC--CeeEEEEecCChH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--KRHYAHVDCPGHA 139 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~iiDtPG~~ 139 (451)
.+..++|+++|++|+|||||+++|++..... .....++.+.....+... ...+.||||||++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSN----------------QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCS----------------SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 3457899999999999999999998542110 011122333333333333 3578999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHH-H------cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHH
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLAR-Q------VGVPSLVCFLNKVDLVEDEELLELVEMELRELL 211 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~-~------~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l 211 (451)
+|.......+..+|++++|+|+++....+. ...+..+. . .++| +++|+||+|+.+..... +++..+.
T Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~ 143 (207)
T 1vg8_A 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLENRQVAT----KRAQAWC 143 (207)
T ss_dssp GGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSSCCCSCH----HHHHHHH
T ss_pred HHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCCcccccCH----HHHHHHH
Confidence 988777778889999999999987432222 22222222 1 3677 77999999997422111 2333444
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+.. ...+++++||++| .|+++++++|.+.+.
T Consensus 144 ~~~----~~~~~~~~Sa~~g----------~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 144 YSK----NNIPYFETSAKEA----------INVEQAFQTIARNAL 174 (207)
T ss_dssp HHT----TSCCEEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred Hhc----CCceEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 322 2468999999998 889998888876553
No 98
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.77 E-value=5e-19 Score=156.45 Aligned_cols=159 Identities=15% Similarity=0.074 Sum_probs=107.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
...++|+++|++|+|||||+++|.+... ..+...+++.+.....+...+ ..+.+|||||+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 70 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTF----------------SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC----------------CCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh
Confidence 4568999999999999999999974311 111222344444444444445 6789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
|.......+..+|++++|+|+++....+. ...+..+... ++| +++|+||+|+.+..... .++...+....+
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 144 (181)
T 3tw8_B 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC-RILVGNKNDDPERKVVE---TEDAYKFAGQMG-- 144 (181)
T ss_dssp CSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSE-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT--
T ss_pred hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCCCchhcccC---HHHHHHHHHHcC--
Confidence 88877788889999999999987432222 1222222222 356 77999999987532111 123344455543
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||++| .|++++++.|.+.+.
T Consensus 145 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 145 ---IQLFETSAKEN----------VNVEEMFNCITELVL 170 (181)
T ss_dssp ---CCEEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred ---CeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 47999999998 899999999877553
No 99
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=157.86 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=93.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEE-eeEEEeeeCCeeEEEEecCChHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA-TAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
...++|+++|.+|+|||||+++|.+....... ...+... .....+......+.||||||+++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 95 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESY----------------TPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY 95 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-----------------------CCCCCEEEEEEEEETTEEEEEEEEEC------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCC----------------CCccceeEEEEEEECCEEEEEEEEECCCchhh
Confidence 45689999999999999999999853211000 0001000 111222222346899999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHH--HHHHHHHH--cCCCeEEEEEeeccCCChHHHHHHH---------HHHHH
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQ--VGVPSLVCFLNKVDLVEDEELLELV---------EMELR 208 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~--~~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~~---------~~~~~ 208 (451)
.......+..+|++++|+|+++...-+.. ..+..+.. .++| +++|+||+|+.+.....+.+ .++..
T Consensus 96 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 174 (214)
T 2j1l_A 96 DRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQ 174 (214)
T ss_dssp ---------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHH
T ss_pred hHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhhccchhhhhhcccccCcccHHHHH
Confidence 88888888999999999999874322221 12233332 2677 78999999998754432222 12445
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++.+.+++ .+++++||++| .|++++++.|.+.+
T Consensus 175 ~~~~~~~~----~~~~~~SA~~g----------~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 175 EMARSVGA----VAYLECSARLH----------DNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHHTTC----SEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred HHHHhcCC----CEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 56666543 48999999998 89999999987754
No 100
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=5.6e-19 Score=178.87 Aligned_cols=154 Identities=20% Similarity=0.191 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH------
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA------ 139 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~------ 139 (451)
.+|+++|.+|+|||||+|+|++. .. ...+...|+|.+.....+++.+..+.+|||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~------~~---------~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 68 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGE------RI---------SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPF 68 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEE------EC---------C-----------CEEEECTTCSSCCEEEC---------CH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC------Cc---------eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhH
Confidence 58999999999999999999743 11 1122344788877777777788899999999985
Q ss_pred --HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 140 --DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 140 --~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
.|...+..++..+|++|+|+|+.++......+....++..++| +++|+||+|+.+... +..++. .+++
T Consensus 69 ~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~p-vilv~NK~D~~~~~~-------~~~~~~-~lg~- 138 (436)
T 2hjg_A 69 LAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDNTEMRA-------NIYDFY-SLGF- 138 (436)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSC-EEEEEECCCC------------CCCSSG-GGSS-
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCccchh-------hHHHHH-HcCC-
Confidence 5667777788899999999999999988888877878778888 779999999875311 111222 2333
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
.+++++||++| .|+.+|++++.+.++.
T Consensus 139 ---~~~~~iSA~~g----------~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 139 ---GEPYPISGTHG----------LGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ---CCCEECBTTTT----------BTHHHHHHHHHHTGGG
T ss_pred ---CCeEEEeCcCC----------CChHHHHHHHHHhcCc
Confidence 36899999999 9999999999988763
No 101
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=7.5e-19 Score=157.47 Aligned_cols=160 Identities=16% Similarity=0.094 Sum_probs=108.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
.+.++|+++|++|+|||||+++|++...... .....+.+.......+......+.||||||+++|.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPE--------------LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTT--------------CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCcc--------------CCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh
Confidence 3468999999999999999999985421100 00111333333334444344678999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......+..+|++++|+|+++.... .....+..+.. .++| +++|+||+|+.+.+.. .++..++.+..+
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~-- 151 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV-NMLVGNKIDKENREVD----RNEGLKFARKHS-- 151 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSSCCSC----HHHHHHHHHHTT--
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEEECCcCcccccC----HHHHHHHHHHcC--
Confidence 8788888999999999999874322 22223333333 2455 7799999999642111 123344555543
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++++||+++ .|+++++++|.+.+.
T Consensus 152 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 152 ---MLFIEASAKTC----------DGVQCAFEELVEKII 177 (195)
T ss_dssp ---CEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred ---CEEEEecCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999998 899999999987665
No 102
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.77 E-value=1.5e-18 Score=156.88 Aligned_cols=161 Identities=17% Similarity=0.156 Sum_probs=107.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe-eEEEeeeCCeeEEEEecCChHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT-AHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
...++|+++|.+|+|||||+++|.+....... ...++... ....+......+.||||||+++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 86 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY----------------VPTVFENYIADIEVDGKQVELALWDTAGQEDY 86 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC----------------CCSSCCCCEEEEEETTEEEEEEEECCCCSGGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCccc----------------CCcccceEEEEEEECCEEEEEEEEECCCchhH
Confidence 34689999999999999999999854211000 00111111 11222222347899999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccH--HHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHH---------HHHHH
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELV---------EMELR 208 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t--~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~---------~~~~~ 208 (451)
.......+..+|++++|+|+++....+. ...+..+... ++| +++|+||+|+.+.....+.+ .++..
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 165 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGR 165 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcCccchhhhcccccCcCCHHHHH
Confidence 8777778889999999999986322111 2233444443 778 77999999998754333222 12445
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
++.+.++. .+++++||+++ .|++++++.|.+.
T Consensus 166 ~~~~~~~~----~~~~~~SA~~g----------~gi~~l~~~i~~~ 197 (201)
T 2gco_A 166 DMANRISA----FGYLECSAKTK----------EGVREVFEMATRA 197 (201)
T ss_dssp HHHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred HHHHhCCC----cEEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 55666543 47999999999 8999999998764
No 103
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.77 E-value=7.5e-19 Score=165.32 Aligned_cols=155 Identities=19% Similarity=0.214 Sum_probs=110.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
..++|+++|++|+|||||+|+|++.... .....|+|++.....+...+..+.||||||+.+|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~----------------~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY----------------VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE----------------EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc----------------ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCC
Confidence 4579999999999999999999854211 111237888877777777788999999999876532
Q ss_pred -----HH-HHhc--ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 144 -----NM-ITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 144 -----~~-~~~~--~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
.+ ...+ ..+|++++|+|+++. ......+..+...++| +++|+||+|+.+.... ..+..++.+.++
T Consensus 68 ~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~p-vilv~NK~Dl~~~~~i----~~~~~~l~~~lg 140 (258)
T 3a1s_A 68 SSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKK-VILAMTAIDEAKKTGM----KIDRYELQKHLG 140 (258)
T ss_dssp SSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCC-EEEEEECHHHHHHTTC----CBCHHHHHHHHC
T ss_pred CCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCC-EEEEEECcCCCCccch----HHHHHHHHHHcC
Confidence 11 1222 579999999999873 2334455566667899 7799999998532111 112344555554
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+|++++||++| .|+++|++.+.+..+
T Consensus 141 -----~~vi~~SA~~g----------~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 141 -----IPVVFTSSVTG----------EGLEELKEKIVEYAQ 166 (258)
T ss_dssp -----SCEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred -----CCEEEEEeeCC----------cCHHHHHHHHHHHhh
Confidence 58999999999 899999999987653
No 104
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.77 E-value=7.9e-19 Score=160.52 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=104.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe--eEEEeeeC----------CeeE
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYETA----------KRHY 130 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~~~----------~~~i 130 (451)
...++|+++|+.|+|||||+++|++.... .+....++.+. ..+.+... ...+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN----------------PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCC----------------CEEEEEEEEEEEEEEEEEEC-------CCEEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCC----------------cCCCCceeEEEEEEEEEECCccccccccCceeEEE
Confidence 45689999999999999999999843110 00011112222 22222222 4678
Q ss_pred EEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHH-HHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHH
Q 013007 131 AHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKE-HILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEM 205 (451)
Q Consensus 131 ~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~-~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~ 205 (451)
.||||||+++|.......+..+|++++|+|+++....+... .+..+.. .++| +++|+||+|+.+..+.. .+
T Consensus 87 ~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v~---~~ 162 (217)
T 2f7s_A 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKADLPDQREVN---ER 162 (217)
T ss_dssp EEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE-EEEEEECTTCGGGCCSC---HH
T ss_pred EEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCC-EEEEEECCccccccccC---HH
Confidence 99999999999998888999999999999998732222111 1111111 3455 78999999997522210 12
Q ss_pred HHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 206 ELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 206 ~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++.++.+.++ ++++++||+++ .|+++++++|.+.+
T Consensus 163 ~~~~~~~~~~-----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 163 QARELADKYG-----IPYFETSAATG----------QNVEKAVETLLDLI 197 (217)
T ss_dssp HHHHHHHHTT-----CCEEEEBTTTT----------BTHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-----CcEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 4455555554 57999999998 88888888887654
No 105
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.77 E-value=3.9e-19 Score=157.47 Aligned_cols=164 Identities=21% Similarity=0.149 Sum_probs=101.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+..++|+++|++|+|||||+++|.+.......... . +.... ....+......+.+|||||+++|.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t---------~-----~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~ 70 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPT---------V-----FDNFS-ANVVVNGATVNLGLWDTAGQEDYN 70 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------CB-CCCC-------CEEECCCC-CTTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCe---------e-----eeeEE-EEEEECCEEEEEEEEECCCChhhh
Confidence 34679999999999999999999854210000000 0 00000 001112223456799999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHH--HHHHHHHHc--CCCeEEEEEeeccCCChHHHHHH-------HHHHHHHHH
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLEL-------VEMELRELL 211 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~--~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~-------~~~~~~~~l 211 (451)
......+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+....... ..++..++.
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~ 149 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhhcCcccccccccCCCCCHHHHHHHH
Confidence 8777888899999999999874322221 233333332 677 7799999998764332100 123445566
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+.++. .+++++||+++ .|++++++.|.+.+.
T Consensus 150 ~~~~~----~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 150 KLIGA----PAYIECSSKSQ----------ENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHTC----SEEEECCTTTC----------TTHHHHHHHHHHHHS
T ss_pred HHcCC----CEEEEEECCCC----------CCHHHHHHHHHHHHh
Confidence 65543 58999999999 999999999987654
No 106
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.77 E-value=4.8e-18 Score=150.95 Aligned_cols=159 Identities=19% Similarity=0.134 Sum_probs=106.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+...+|+++|++|+|||||+++|.+.. ...+ ....|.+ ...+...+..+.+|||||+++|.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~------~~~~---------~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~~~ 74 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASED------ISHI---------TPTQGFN----IKSVQSQGFKLNVWDIGGQRKIR 74 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC------CEEE---------EEETTEE----EEEEEETTEEEEEEECSSCGGGH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC------CCcc---------cCcCCeE----EEEEEECCEEEEEEECCCCHHHH
Confidence 446899999999999999999997430 0000 0011222 22334457889999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
.....++..+|++++|+|+++...- ...+.+..+. ..++| +++|+||+|+.+... .+ ++.+.+......
T Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~~~~~~~~~~~~ 148 (181)
T 1fzq_A 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTAAP-AS----EIAEGLNLHTIR 148 (181)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCC
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcccCCC-HH----HHHHHhCchhcc
Confidence 8888889999999999999874321 2222333221 23677 779999999976322 11 222222111112
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
....+++++||++| .|+++++++|.+.+.
T Consensus 149 ~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 149 DRVWQIQSCSALTG----------EGVQDGMNWVCKNVN 177 (181)
T ss_dssp SSCEEEEECCTTTC----------TTHHHHHHHHHHTC-
T ss_pred CCceEEEEccCCCC----------CCHHHHHHHHHHHHH
Confidence 23468999999999 999999999988765
No 107
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1.8e-18 Score=155.55 Aligned_cols=163 Identities=15% Similarity=0.079 Sum_probs=107.0
Q ss_pred ccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH
Q 013007 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (451)
Q Consensus 60 ~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (451)
+.....++|+++|++|+|||||+++|++........ ...+.+.. ....+......+.||||||++
T Consensus 3 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~ 67 (199)
T 2gf0_A 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYI--------------PTIEDTYR-QVISCDKSVCTLQITDTTGSH 67 (199)
T ss_dssp --CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTS--------------CCCCEEEE-EEEEETTEEEEEEEEECCGGG
T ss_pred ccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCccc--------------Ccccccee-EEEEECCEEEEEEEEeCCChH
Confidence 344567899999999999999999998631110000 00011111 112222233578999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH-----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
+|.......+..+|++++|+|+++... ......+..+.. .++| +++|+||+|+.+.+... ++...+...
T Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~ 142 (199)
T 2gf0_A 68 QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQREVDT----REAQAVAQE 142 (199)
T ss_dssp SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSCSSCH----HHHHHHHHH
T ss_pred HhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCccccCH----HHHHHHHHH
Confidence 998888888899999999999986322 222223333322 2577 78999999997522111 223344444
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
++ ++++++||+++ .|+++++++|.+.+..
T Consensus 143 ~~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 143 WK-----CAFMETSAKMN----------YNVKELFQELLTLETR 171 (199)
T ss_dssp HT-----CEEEECBTTTT----------BSHHHHHHHHHHHCSS
T ss_pred hC-----CeEEEEecCCC----------CCHHHHHHHHHHHHhh
Confidence 43 47999999998 8999999999987753
No 108
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.77 E-value=1.1e-18 Score=152.26 Aligned_cols=156 Identities=22% Similarity=0.155 Sum_probs=89.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
.++|+++|++|+|||||+++|.+.... ......|.+.. ....+......+.+|||||+++|...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG---------------PEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE-EEEEETTEEEEEEEEECC--------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc---------------CCCCccccceE-EEEEECCEEEEEEEEECCCCccchhh
Confidence 469999999999999999999733110 01111233332 22223333456889999999999888
Q ss_pred HHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
....+..+|++++|+|.++... ......+..+.. .++| +++|+||+|+.+..+.. .++...+....+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 137 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSREVS---VDEGRACAVVFD---- 137 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCCSC---HHHHHHHHHHTT----
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccccccccccC---HHHHHHHHHHhC----
Confidence 8888899999999999986322 122223333333 3677 77999999997532211 112334444443
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||++| .|++++++.|.+.+
T Consensus 138 -~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 138 -CKFIETSAALH----------HNVQALFEGVVRQI 162 (166)
T ss_dssp -CEEEECBGGGT----------BSHHHHHHHHHHHH
T ss_pred -CcEEEeccCCC----------CCHHHHHHHHHHHH
Confidence 58999999999 89999999987654
No 109
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.77 E-value=1.7e-18 Score=153.89 Aligned_cols=157 Identities=17% Similarity=0.079 Sum_probs=104.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
.+.++|+++|+.|+|||||+++|.+...... ....+.......+...+ ..+.||||||+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 78 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVED-----------------YEPTKADSYRKKVVLDGEEVQIDILDTAGQED 78 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCS-----------------CCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCc-----------------CCCccceEEEEEEEECCEEEEEEEEECCCCcc
Confidence 4568999999999999999999985421000 00111111111222333 4789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
|.......+..+|++++|+|+++....+ ....+..+.. .++| +++|+||+|+.+..+. ..+++.++++.++
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 154 (187)
T 2a9k_A 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRAEQWN 154 (187)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGGGCCS---CHHHHHHHHHHTT
T ss_pred cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCcc---CHHHHHHHHHHcC
Confidence 9888888899999999999998632211 1222222222 2677 7799999998652211 1124445556543
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||+++ .|+++++++|.+.+
T Consensus 155 -----~~~~~~Sa~~~----------~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 155 -----VNYVETSAKTR----------ANVDKVFFDLMREI 179 (187)
T ss_dssp -----CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred -----CeEEEeCCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 89999999987754
No 110
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.76 E-value=4.1e-19 Score=157.43 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=102.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|+++|++|+|||||+++|.+..... +. ....+.+. .....+......+.+|||||+++|.
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-----------~~---~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~ 68 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVD-----------SY---DPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYS 68 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCS-----------CC---CTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCC-----------CC---CCCccccE-EEEEEECCEEEEEEEEeCCCchhhh
Confidence 356899999999999999999998431100 00 00112222 1222222223567899999999986
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHH----HHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLA----RQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~----~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......+..+|++++|+|+++....+. ...+..+ ...++| +++|+||+|+.+..... .++..++.+.++
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 142 (181)
T 3t5g_A 69 IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERVIS---YEEGKALAESWN-- 142 (181)
T ss_dssp CCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCCSC---HHHHHHHHHHTT--
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcceec---HHHHHHHHHHhC--
Confidence 666677788999999999986322111 1111122 223677 77999999986532211 124455666654
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||+++ .|+.++++.|.+.+.
T Consensus 143 ---~~~~~~Sa~~~----------~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 143 ---AAFLESSAKEN----------QTAVDVFRRIILEAE 168 (181)
T ss_dssp ---CEEEECCTTSH----------HHHHHHHHHHHHHHH
T ss_pred ---CcEEEEecCCC----------CCHHHHHHHHHHHHH
Confidence 47999999999 999999999987654
No 111
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.76 E-value=4.8e-19 Score=154.85 Aligned_cols=156 Identities=17% Similarity=0.108 Sum_probs=103.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC--CeeEEEEecCChHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--KRHYAHVDCPGHADYV 142 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~iiDtPG~~~~~ 142 (451)
.++|+++|++|+|||||+++|.+.... .+....++.+.....+... ...+.+|||||+++|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 66 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN----------------PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR 66 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC----------------C-------CCEEEEEEESSSCEEEEEEECCTTGGGTS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC----------------CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh
Confidence 579999999999999999999853110 0111122222222233333 3578999999999988
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
..+...+..+|++++|+|+++... ......+..+... ++| +++|+||+|+.+..... ++..++.+.++
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~--- 138 (170)
T 1g16_A 67 TITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTA----DQGEALAKELG--- 138 (170)
T ss_dssp CCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCCSCH----HHHHHHHHHHT---
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCccCH----HHHHHHHHHcC---
Confidence 777778889999999999987432 2223333334332 566 78999999995422111 23344555544
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++++||+++ .|++++++.|.+.+.
T Consensus 139 --~~~~~~Sa~~~----------~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 139 --IPFIESSAKND----------DNVNEIFFTLAKLIQ 164 (170)
T ss_dssp --CCEEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 47999999998 889999998877654
No 112
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=2.3e-18 Score=156.45 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=106.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|+++|.+|+|||||+++|.+....... ....+.... ....+......+.||||||+++|.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~ 87 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVY--------------VPTVFENYV-ADIEVDGKQVELALWDTAGQEDYD 87 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEE-EEEEETTEEEEEEEEECTTCTTCT
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcC--------------CCcccceEE-EEEEECCEEEEEEEEECCCcHHHH
Confidence 34679999999999999999999853110000 000011111 112222223578999999999988
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCcc-H-HHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHH---------HHHHH
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQ-T-KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVE---------MELRE 209 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~-t-~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~---------~~~~~ 209 (451)
......+..+|++++|+|+++....+ . ...+..+... ++| +++|+||+|+.+.....+.+. ++..+
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (207)
T 2fv8_A 88 RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA 166 (207)
T ss_dssp TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhccccchhhhhhcccCCCCHHHHHH
Confidence 77777888999999999998632211 1 2233444443 778 779999999986443332221 12334
Q ss_pred HHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 210 ~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+...++. .+++++||++| .|++++++.|.+.+.
T Consensus 167 ~~~~~~~----~~~~~~SA~~g----------~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 167 MAVRIQA----YDYLECSAKTK----------EGVREVFETATRAAL 199 (207)
T ss_dssp HHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred HHHhcCC----CEEEEeeCCCC----------CCHHHHHHHHHHHHH
Confidence 4445433 47999999999 899999999987654
No 113
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.76 E-value=2.7e-18 Score=161.83 Aligned_cols=167 Identities=13% Similarity=0.147 Sum_probs=110.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH-
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY- 141 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~- 141 (451)
...++|+++|++|+|||||+++|++.. .+.. .....++|.......+.+.+..++||||||+.++
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~------~~~~--------~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQ------AFES--------KLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSC------CSCC--------CTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCC------Cccc--------CCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 446899999999999999999998431 1110 0011124555544556667889999999998764
Q ss_pred ----------HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHc-----CCCeEEEEEe-eccCCChHHHHHHHH-
Q 013007 142 ----------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-----GVPSLVCFLN-KVDLVEDEELLELVE- 204 (451)
Q Consensus 142 ----------~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~-----~ip~iivviN-K~D~~~~~~~~~~~~- 204 (451)
...+..++..+|++++|+|++. +..+....+..+... +.|.+ +++| |+|+.+. ...+.+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i-~vv~nK~Dl~~~-~~~~~i~~ 162 (260)
T 2xtp_A 86 DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTI-VLFTHKEDLNGG-SLMDYMHD 162 (260)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEE-EEEECGGGGTTC-CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEE-EEEEcccccCCc-cHHHHHHh
Confidence 3333446778999999999985 666666666666654 56744 6666 9999853 2222121
Q ss_pred ---HHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 205 ---MELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 205 ---~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+++.++++.++..-..+..+++||+++ .|+.+|++.|.+.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~----------~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 163 SDNKALSKLVAACGGRICAFNNRAEGSNQD----------DQVKELMDCIEDLLM 207 (260)
T ss_dssp CCCHHHHHHHHHTTTCEEECCTTCCHHHHH----------HHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhCCeEEEecCcccccccH----------HHHHHHHHHHHHHHH
Confidence 234455665542100011288999998 999999999988765
No 114
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.76 E-value=2.2e-18 Score=154.49 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=105.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
.+..+|+++|++|+|||||+++|.+.... ....|+......+..++..+.+|||||+++|.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-------------------TLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-------------------CCCCCCSCEEEEEEETTEEEEEEECCCSGGGT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-------------------ccccCCCCCeEEEEECCEEEEEEECCCCHHHH
Confidence 44579999999999999999999853110 00112222233455567889999999999988
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC--
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK-- 215 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~-- 215 (451)
.....+++.+|++++|+|+++... ......+..+. ..++| +++|+||+|+.+... . +++.+.++...
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~----~~~~~~~~~~~~~ 155 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNAVS-E----AELRSALGLLNTT 155 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCC-H----HHHHHHTTCSSCC
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCCCC-H----HHHHHHhCCcccc
Confidence 777778889999999999987532 22223333332 24677 789999999975211 1 12333333221
Q ss_pred -----CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 216 -----FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 216 -----~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
......+++++||++| .|++++++.|.+.
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~g----------~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 156 GSQRIEGQRPVEVFMCSVVMR----------NGYLEAFQWLSQY 189 (190)
T ss_dssp C---CCSSCCEEEEECBTTTT----------BSHHHHHHHHHTT
T ss_pred ccccccccceEEEEEeECCcC----------CCHHHHHHHHHhh
Confidence 0113468999999999 9999999998764
No 115
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.76 E-value=2.3e-18 Score=154.61 Aligned_cols=159 Identities=18% Similarity=0.143 Sum_probs=101.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
++.++|+++|++|+|||||+++|.+.. +.. . ..|+......++..+..+.+|||||+++|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~-------~~~--------~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 87 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE-------IVT--------T----IPTIGFNVETVEYKNICFTVWDVGGQDKIR 87 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC-------CEE--------E----EEETTEEEEEEEETTEEEEEEECC-----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC-------ccc--------c----CCcCceeEEEEEECCEEEEEEECCCCHhHH
Confidence 456899999999999999999997321 000 0 012222233345567889999999999987
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......+..+|++++|+|+++... ....+.+..+.. .++| +++|+||+|+.+... .+ ++.+.+......
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~ 161 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNAMP-VS----ELTDKLGLQHLR 161 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCS
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCCCC-HH----HHHHHhCccccc
Confidence 777778889999999999987532 222223332222 2566 789999999976321 11 122222111122
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
....+++++||+++ .|+++++++|.+.+.
T Consensus 162 ~~~~~~~~~SA~~g----------~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 162 SRTWYVQATCATQG----------TGLYDGLDWLSHELS 190 (192)
T ss_dssp SCCEEEEECBTTTT----------BTHHHHHHHHHHHTT
T ss_pred CCceEEEECcCCCc----------CCHHHHHHHHHHHHh
Confidence 23468999999998 899999999987654
No 116
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.76 E-value=4.7e-19 Score=168.12 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=110.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
+.++|+++|++|+|||||+++|++..... ....|+|++.....+...+..+.+|||||+.+|..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHV----------------GNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEE----------------EECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCccc----------------CCCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 35799999999999999999998542111 12336777777777777888899999999877533
Q ss_pred ------HHHHh--cccCCEEEEEEeCCCCCCccHHHHHHHHHHcC-CCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhc
Q 013007 144 ------NMITG--AAQMDGGILVVSAPDGPMPQTKEHILLARQVG-VPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (451)
Q Consensus 144 ------~~~~~--~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~-ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~ 214 (451)
..... ...+|++++|+|+++. .+....+..+...+ +| +++|+||+|+.+.... ......+.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~----~~~~~~l~~~l 138 (271)
T 3k53_A 66 HSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLLKKKGA----KIDIKKMRKEL 138 (271)
T ss_dssp SCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHHHHHTC----CCCHHHHHHHH
T ss_pred CCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcCccccc----HHHHHHHHHHc
Confidence 12222 2579999999999874 34455555666677 88 7799999997642211 11133344444
Q ss_pred CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 215 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+ +|++++||++| .|+.++++.+.+.+.
T Consensus 139 g-----~~~~~~Sa~~g----------~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 139 G-----VPVIPTNAKKG----------EGVEELKRMIALMAE 165 (271)
T ss_dssp S-----SCEEECBGGGT----------BTHHHHHHHHHHHHH
T ss_pred C-----CcEEEEEeCCC----------CCHHHHHHHHHHHHh
Confidence 4 58999999998 899999999887653
No 117
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.76 E-value=8.2e-19 Score=159.84 Aligned_cols=166 Identities=19% Similarity=0.150 Sum_probs=107.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|+++|++|+|||||+++|.+....... .+ ..+... .....+......+.||||||+++|.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~-----------~~---t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 71 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-----------IP---TVFDNF-SANVAVDGQIVNLGLWDTAGQEDYS 71 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC-----------CC---SSCCCE-EEEEECSSCEEEEEEECCCCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccC-----------CC---ccceeE-EEEEEECCEEEEEEEEECCCcHHHH
Confidence 45689999999999999999999854211000 00 001111 1112222233578999999999988
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHH--HHHHHHHHc--CCCeEEEEEeeccCCChHHHHHH-----HHHHHHHHHHh
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLEL-----VEMELRELLSF 213 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~--~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~-----~~~~~~~~l~~ 213 (451)
.....++..+|++++|+|+++...-+.. ..+..+... ++| +++|+||+|+.+....... ..++..++.+.
T Consensus 72 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (212)
T 2j0v_A 72 RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ 150 (212)
T ss_dssp C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH
Confidence 7777788899999999999874322221 233344433 677 7799999998764332000 12344556666
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCC
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~ 258 (451)
++. .+++++||+++ .|++++++.|.+.+...
T Consensus 151 ~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 151 IGA----AAYIECSSKTQ----------QNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HTC----SEEEECCTTTC----------TTHHHHHHHHHHHHHCC
T ss_pred cCC----ceEEEccCCCC----------CCHHHHHHHHHHHHhhh
Confidence 553 58999999999 89999999998766533
No 118
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.76 E-value=1.7e-18 Score=154.79 Aligned_cols=164 Identities=13% Similarity=0.128 Sum_probs=102.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
++.++|+++|++|+|||||+++|.+....... ....+.+.......+......+.||||||+++|.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT--------------EATIGVDFRERAVDIDGERIKIQLWDTAGQERFR 83 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC--------------CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCCcceEEEEEEEEECCEEEEEEEEECCCchhhh
Confidence 45689999999999999999999853111000 0111222222233332223578999999999998
Q ss_pred -HHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 143 -KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 143 -~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
......++.+|++++|+|+++.... .....+..+. ..++| +++|+||+|+.+..+.. .++..++.+..+
T Consensus 84 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~- 158 (189)
T 1z06_A 84 KSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAIQVP---TDLAQKFADTHS- 158 (189)
T ss_dssp TTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHTT-
T ss_pred hhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceeC---HHHHHHHHHHcC-
Confidence 6666778899999999999873221 2222223222 23677 78999999996532111 123444555543
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++++||+++.. ..++.++++.|.+.++
T Consensus 159 ----~~~~~~Sa~~~~~-------~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 159 ----MPLFETSAKNPND-------NDHVEAIFMTLAHKLK 187 (189)
T ss_dssp ----CCEEECCSSSGGG-------GSCHHHHHHHHC----
T ss_pred ----CEEEEEeCCcCCc-------ccCHHHHHHHHHHHHh
Confidence 5799999998621 2578899988876554
No 119
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.76 E-value=4e-18 Score=152.32 Aligned_cols=156 Identities=17% Similarity=0.110 Sum_probs=94.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
.+.++|+++|..|+|||||+++|++..... .. . +.+.......+...+ ..+.||||||+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~------------~~----~-~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVD------------EY----D-PTIEDSYRKQVVIDGETCLLDILDTAGQEE 81 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCS------------CC----C-TTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCcc------------cc----C-CccceEEEEEEEECCEEEEEEEEECCChHH
Confidence 346899999999999999999998541100 00 0 111111111222333 4589999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
|.......+..+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.+.... .+++.++.+.++
T Consensus 82 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~ 156 (190)
T 3con_A 82 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTRTVD----TKQAHELAKSYG 156 (190)
T ss_dssp --------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCSC----HHHHHHHHHHHT
T ss_pred HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCcccCC----HHHHHHHHHHcC
Confidence 98888888999999999999987432222 222223332 2677 7799999998752211 123445555554
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||+++ .|+.++++.|.+.+
T Consensus 157 -----~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 181 (190)
T 3con_A 157 -----IPFIETSAKTR----------QGVEDAFYTLVREI 181 (190)
T ss_dssp -----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred -----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 47999999998 89999999887654
No 120
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.76 E-value=3e-18 Score=148.78 Aligned_cols=156 Identities=18% Similarity=0.162 Sum_probs=102.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
.++|+++|+.|+|||||+++|.+....... .+ ..+... .....+......+.+|||||+++|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----------~~---~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~ 67 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEC-----------DP---TIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCC-----------CT---TCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcccc-----------CC---ccceEE-EEEEEECCEEEEEEEEECCCchhhhHH
Confidence 469999999999999999999854111000 00 001111 111222222356789999999998887
Q ss_pred HHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHHc----CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV----GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~~----~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
....+..+|++++|+|+++.... ...+.+..+... ++| +++|+||+|+.+.+.. .++..++.+.++
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~~~----~~~~~~~~~~~~---- 138 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAARTVE----SRQAQDLARSYG---- 138 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCSC----HHHHHHHHHHHT----
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhcccC----HHHHHHHHHHcC----
Confidence 77888899999999999864221 122233333322 677 7799999998762211 123445555544
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||+++ .|+.++++.|.+.+
T Consensus 139 -~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 139 -IPYIETSAKTR----------QGVEDAFYTLVREI 163 (166)
T ss_dssp -CCEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred -CeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 47999999998 89999999987654
No 121
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.76 E-value=9.2e-19 Score=158.24 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=103.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
...++|+++|..|+|||||+++|++...... ....++.+.....+...+ ..+.||||||+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 86 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD----------------SNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEETTEEEEEEEECCTTHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCcc----------------CCCcccceeEEEEEEECCeeeEEEEEcCCCcHh
Confidence 4568999999999999999999985421111 111222222222233333 6789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
|.......+..+|++++|+|+++....+ ....+..+.. .++| +++|+||+|+.+..... .++..++.+..+
T Consensus 87 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~- 161 (200)
T 2o52_A 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLDPEREVT---FLEASRFAQENE- 161 (200)
T ss_dssp HSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT-
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccccC---HHHHHHHHHHcC-
Confidence 8777777888999999999998743222 2223333332 2566 78999999986421110 123344555543
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||++| .|++++++.|.+.+
T Consensus 162 ----~~~~~~SA~~g----------~gi~~l~~~l~~~i 186 (200)
T 2o52_A 162 ----LMFLETSALTG----------ENVEEAFLKCARTI 186 (200)
T ss_dssp ----CEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 88999998887654
No 122
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=155.05 Aligned_cols=157 Identities=17% Similarity=0.079 Sum_probs=104.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
.+.++|+++|++|+|||||+++|.+...... ....+.......+...+ ..+.||||||+++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVED-----------------YEPTKADSYRKKVVLDGEEVQIDILDTAGQED 74 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTT-----------------CCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------CCCccceEEEEEEEECCEEEEEEEEcCCChhh
Confidence 4568999999999999999999985421000 00111111112223333 4789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
|.......+..+|++++|+|+++.... .....+..+.. .++| +++|+||+|+.+..+. ..+++.++++.++
T Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 150 (206)
T 2bov_A 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQV---SVEEAKNRAEQWN 150 (206)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGGGCCS---CHHHHHHHHHHHT
T ss_pred hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCccccccc---cHHHHHHHHHHhC
Confidence 988888888999999999999873221 11222222222 2677 7799999999753211 0123445555544
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||++| .|+++++++|.+.+
T Consensus 151 -----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 175 (206)
T 2bov_A 151 -----VNYVETSAKTR----------ANVDKVFFDLMREI 175 (206)
T ss_dssp -----CEEEEECTTTC----------TTHHHHHHHHHHHH
T ss_pred -----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 47999999998 88999998887655
No 123
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.76 E-value=7.9e-19 Score=159.19 Aligned_cols=158 Identities=16% Similarity=0.087 Sum_probs=105.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
...++|+++|++|+|||||+++|.+.... .+....++.+.....+...+ ..+.||||||+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYT----------------NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCC----------------TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence 34689999999999999999999854211 11111222222222333333 4789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
|.......+..+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.+..... .++...+.+..+
T Consensus 70 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 144 (206)
T 2bcg_Y 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLKDKRVVE---YDVAKEFADANK- 144 (206)
T ss_dssp TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSC---HHHHHHHHHHTT-
T ss_pred HHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC---HHHHHHHHHHcC-
Confidence 88777778889999999999987432222 222333333 2456 77999999997632211 123344555543
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||++| .|++++++.|.+.+
T Consensus 145 ----~~~~~~Sa~~g----------~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 145 ----MPFLETSALDS----------TNVEDAFLTMARQI 169 (206)
T ss_dssp ----CCEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 88999888887654
No 124
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.75 E-value=5.8e-19 Score=156.01 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=102.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
...++|+++|+.|+|||||+++|++..... + ....+.... ...+..++ ..+.+|||||+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------~-----~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVS-----------D-----YDPTIEDSY-TKICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCS-----------S-----CCTTCCEEE-EEEEEETTEEEEEEEEECCCTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCcc-----------c-----cCCCcCceE-EEEEEECCEEEEEEEEECCCchh
Confidence 446899999999999999999998541100 0 000111111 12223333 5688999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHH-H---HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA-R---QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~-~---~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
|.......+..+|++++|+|+++... ......+..+ . ..++| +++|+||+|+.+..+.. .++...+....
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~- 144 (181)
T 2fn4_A 70 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLESQRQVP---RSEASAFGASH- 144 (181)
T ss_dssp TSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGGGCCSC---HHHHHHHHHHT-
T ss_pred hHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccC---HHHHHHHHHHc-
Confidence 87777777888999999999987322 1122222222 2 23677 77999999997532211 12333444443
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
..+++++||+++ .|++++++.|.+.+.
T Consensus 145 ----~~~~~~~Sa~~~----------~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 145 ----HVAYFEASAKLR----------LNVDEAFEQLVRAVR 171 (181)
T ss_dssp ----TCEEEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred ----CCeEEEecCCCC----------CCHHHHHHHHHHHHH
Confidence 358999999998 889999988877653
No 125
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=1.4e-18 Score=158.05 Aligned_cols=156 Identities=17% Similarity=0.098 Sum_probs=104.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADY 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~ 141 (451)
..++|+++|++|+|||||+++|++.... .+....++.+.....+...+ ..+.||||||+++|
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 82 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN----------------PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF 82 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC----------------CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC----------------cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 4589999999999999999999853110 01111233333333344444 57899999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
...+...+..+|++++|+|+++... ......+..+... ++| +++|+||+|+....... ++..++.+.++
T Consensus 83 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~-- 155 (213)
T 3cph_A 83 RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTA----DQGEALAKELG-- 155 (213)
T ss_dssp TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTCSSCCSCH----HHHHHHHHHHT--
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccCH----HHHHHHHHHcC--
Confidence 8777778889999999999987432 2223333444332 566 78999999995422111 23344555544
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||+++ .|+.+++++|.+.+
T Consensus 156 ---~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 156 ---IPFIESSAKND----------DNVNEIFFTLAKLI 180 (213)
T ss_dssp ---CCEEECBTTTT----------BSSHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 47999999998 78888888776654
No 126
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.75 E-value=4.4e-18 Score=151.49 Aligned_cols=162 Identities=15% Similarity=0.066 Sum_probs=104.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|+++|++|+|||||+++|.+......... ..+... .....+......+.+|||||+++|.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~--------------t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 69 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVP--------------TVFENY-TASFEIDTQRIELSLWDTSGSPYYD 69 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCC--------------CSEEEE-EEEEECSSCEEEEEEEEECCSGGGT
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--------------ccceeE-EEEEEECCEEEEEEEEECCCChhhh
Confidence 4568999999999999999999985421100000 001111 1112223334578999999999987
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHH--HHHHHHHH--cCCCeEEEEEeeccCCChHHHHHHH---------HHHHHH
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQ--VGVPSLVCFLNKVDLVEDEELLELV---------EMELRE 209 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~--~~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~~---------~~~~~~ 209 (451)
......+..+|++++|+|+++....+.. ..+..+.. .++| +++|.||+|+.++.....++ .++..+
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 148 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH
Confidence 7777778899999999999873222211 12233333 2566 88999999997533222111 124555
Q ss_pred HHHhcCCCCCCCCeeecccc-ccccCCCcccchhhHHHHHHHHHhh
Q 013007 210 LLSFYKFPGDEIPIIRGSAT-SALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 210 ~l~~~~~~~~~~pvi~~Sa~-~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
+.+.++. .+++++||+ ++ .|++++++.+.+.
T Consensus 149 ~~~~~~~----~~~~e~Sa~~~~----------~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 149 MAKQIGA----ATYIECSALQSE----------NSVRDIFHVATLA 180 (184)
T ss_dssp HHHHHTC----SEEEECBTTTBH----------HHHHHHHHHHHHH
T ss_pred HHHHcCC----cEEEEeeecCCC----------cCHHHHHHHHHHH
Confidence 6666543 689999998 67 8999999988764
No 127
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.75 E-value=6.3e-18 Score=154.15 Aligned_cols=169 Identities=18% Similarity=0.163 Sum_probs=98.3
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-CeeEEEEecCChHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHAD 140 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~ 140 (451)
++..++|+++|++|+|||||+++|++.... +....++.+.....+... ...+.+|||||+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 66 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYR-----------------DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES 66 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCC-----------------CBCCCCSCEEEEEECSSTTCCEEEEEECCCCHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcc-----------------cccCCcceeeEEEEecCCCccEEEEEECCCChh
Confidence 445689999999999999999999854210 000112222222223222 56799999999999
Q ss_pred HHH-HHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHH---------HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHH
Q 013007 141 YVK-NMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR---------QVGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (451)
Q Consensus 141 ~~~-~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~---------~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (451)
|.. .....+..+|++++|+|+++ ...+..+....+. ..++| +++|+||+|+.+... .+.+.+.+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~~~~~l~~~ 143 (214)
T 2fh5_B 67 LRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIAMAKS-AKLIQQQLEKE 143 (214)
T ss_dssp HHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTSTTCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECCCCCCccc-HHHHHHHHHHH
Confidence 987 45566889999999999976 1112222222211 12466 789999999986322 12233333333
Q ss_pred HHh---------------------cCCCC---------CCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 211 LSF---------------------YKFPG---------DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 211 l~~---------------------~~~~~---------~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
+.. .+-.+ ..++++++||++|.... ...|+++++++|.+.
T Consensus 144 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~----~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 144 LNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDT----GSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----------CCBCHHHHHHHHHH
T ss_pred HHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccc----cccChHHHHHHHHHh
Confidence 331 11000 15679999999872211 115788888888754
No 128
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=1.1e-18 Score=154.77 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=102.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+..++|+++|++|+|||||+++|++... .. . ..|+......+...+..+.+|||||+++|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~------~~----~---------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV------VT----T---------KPTIGFNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE------EE----E---------CSSTTCCEEEEEETTEEEEEEEEC----CC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc------Cc----c---------CCcCccceEEEEECCEEEEEEECCCCHhHH
Confidence 4568999999999999999999973211 00 0 011111222344457889999999999987
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......+..+|++++|+|+++... ....+.+..+.. .++| +++|+||+|+.+... .+ ++.+.+......
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~i~~~~~~~~~~ 150 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQPGALS-AS----EVSKELNLVELK 150 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTCCC-HH----HHHHHTTTTTCC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCCCC-HH----HHHHHhCccccc
Confidence 777778889999999999987543 222333333332 4566 789999999976321 11 222333222222
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
....+++++||+++ .|+++++++|.+.+
T Consensus 151 ~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 151 DRSWSIVASSAIKG----------EGITEGLDWLIDVI 178 (183)
T ss_dssp SSCEEEEEEBGGGT----------BTHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCC----------cCHHHHHHHHHHHH
Confidence 23468999999999 89999999997754
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.75 E-value=2.6e-18 Score=174.65 Aligned_cols=156 Identities=16% Similarity=0.111 Sum_probs=94.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
..++|+++|++|+|||||+|+|++.. ....+...|+|.+.....+...+..+.||||||+.++..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~---------------~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~ 296 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQE---------------RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE 296 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---------------CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh
Confidence 35789999999999999999998541 111122346777766666677888999999999987643
Q ss_pred H--------HHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHHc-CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 144 N--------MITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV-GVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 144 ~--------~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~~-~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
. +...+..+|++++|+|++++...+ ..+...++... ++| +++|+||+|+.+.... +. +++.+.
T Consensus 297 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~p-iIvV~NK~Dl~~~~~~-~~-----~~l~~~ 369 (476)
T 3gee_A 297 EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAK-FLTVANKLDRAANADA-LI-----RAIADG 369 (476)
T ss_dssp -----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSE-EEEEEECTTSCTTTHH-HH-----HHHHHH
T ss_pred HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCC-EEEEEECcCCCCccch-hH-----HHHHhc
Confidence 2 344677899999999999877652 11222333333 556 7899999999874432 11 112221
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++ .+++++||++| .|+++|+++|.+.++
T Consensus 370 -~~----~~~i~vSAktg----------~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 370 -TG----TEVIGISALNG----------DGIDTLKQHMGDLVK 397 (476)
T ss_dssp -HT----SCEEECBTTTT----------BSHHHHHHHHTHHHH
T ss_pred -CC----CceEEEEECCC----------CCHHHHHHHHHHHHh
Confidence 22 57999999999 999999999988775
No 130
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.75 E-value=7.3e-19 Score=158.92 Aligned_cols=160 Identities=21% Similarity=0.159 Sum_probs=104.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
.+.++|+++|.+|+|||||+++|++........ ...+.+. .....+......+.||||||+++|.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~ 86 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD--------------PTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYS 86 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC--------------CCSEEEE-EEEEC----CEEEEEEEECCCCTTC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC--------------CccceEE-EEEEEECCEEEEEEEEECCCccchH
Confidence 457899999999999999999998542111000 0001111 2222233345778999999999988
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......+..+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.+..... .++...+.+.++
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~-- 160 (201)
T 3oes_A 87 ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPEREVQ---AVEGKKLAESWG-- 160 (201)
T ss_dssp CCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT--
T ss_pred HHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCccccccC---HHHHHHHHHHhC--
Confidence 777778889999999999986322221 222222222 3677 77999999987532211 123344555543
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||+++ .|++++++.|.+.+.
T Consensus 161 ---~~~~~~Sa~~~----------~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 161 ---ATFMESSAREN----------QLTQGIFTKVIQEIA 186 (201)
T ss_dssp ---CEEEECCTTCH----------HHHHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 47999999999 999999999987654
No 131
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.75 E-value=2.9e-18 Score=151.21 Aligned_cols=152 Identities=17% Similarity=0.159 Sum_probs=103.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH--
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY-- 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~-- 141 (451)
+..+|+++|.+|+|||||+++|++... .. .....++|.+.....+...+..+.+|||||+.++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~------~~---------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 67 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREA------AI---------VTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD 67 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCC------SC---------CCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc------ce---------eeCCCCceeceeeEEEEECCeEEEEEECCCcccchh
Confidence 346999999999999999999985310 00 0112244544444445556778999999997542
Q ss_pred ------HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHH
Q 013007 142 ------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (451)
Q Consensus 142 ------~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~ 212 (451)
.......+..+|++++|+|+++....+..+.+..+... ++| +++|+||+|+.+... ++.+
T Consensus 68 ~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~----------~~~~ 136 (172)
T 2gj8_A 68 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP-ITVVRNKADITGETL----------GMSE 136 (172)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCC-EEEEEECHHHHCCCC----------EEEE
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCC-EEEEEECccCCcchh----------hhhh
Confidence 12233457889999999999987665555555444433 577 779999999853210 0000
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
. ...+++++||+++ .|++++++.|.+.+.
T Consensus 137 ~-----~~~~~~~~SA~~g----------~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 137 V-----NGHALIRLSARTG----------EGVDVLRNHLKQSMG 165 (172)
T ss_dssp E-----TTEEEEECCTTTC----------TTHHHHHHHHHHHC-
T ss_pred c-----cCCceEEEeCCCC----------CCHHHHHHHHHHHhh
Confidence 1 2368999999999 999999999988765
No 132
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.75 E-value=5.1e-19 Score=161.92 Aligned_cols=163 Identities=16% Similarity=0.091 Sum_probs=101.8
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC-eeEEEEecCChH
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHA 139 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~ 139 (451)
.....++|+++|.+|+|||||+++|++..... . .....+.+............ ..+.+|||||++
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----~---------~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEK-----N---------YNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTC-----E---------EETTTTEEEEEEEEEBTTSCEEEEEEEEECSGG
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCC-----C---------CCCccceeeEEEEEEeCCCcEEEEEEEecCCch
Confidence 34567899999999999999999997431110 0 00011222211111111111 568999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCccHH-HHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~-~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
+|.......+..+|++++|+|++++...+.. ..+..+.. .++| +++|+||+|+.+..+.. .+...++.+..
T Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~- 147 (218)
T 4djt_A 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAP-IVVCANKIDIKNRQKIS---KKLVMEVLKGK- 147 (218)
T ss_dssp GTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSC-EEEEEECTTCC----CC---HHHHHHHTTTC-
T ss_pred hhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccC---HHHHHHHHHHc-
Confidence 9877777778889999999999975433322 22233332 3577 77999999997532211 12333343332
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
..+++++||++| .|++++++.|.+.+.
T Consensus 148 ----~~~~~~~Sa~~g----------~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 148 ----NYEYFEISAKTA----------HNFGLPFLHLARIFT 174 (218)
T ss_dssp ----CCEEEEEBTTTT----------BTTTHHHHHHHHHHH
T ss_pred ----CCcEEEEecCCC----------CCHHHHHHHHHHHHh
Confidence 468999999998 888888888877654
No 133
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=2.1e-18 Score=153.80 Aligned_cols=156 Identities=22% Similarity=0.250 Sum_probs=107.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH-
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV- 142 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~- 142 (451)
..++|+++|+.|+|||||+++|++.. +. .+...++|.+.....+...+..+.+|||||+.+|.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~-------~~---------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 69 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN-------VY---------IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTA 69 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC-------EE---------EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-------cc---------ccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccc
Confidence 35799999999999999999998531 10 11123566666555666678899999999988762
Q ss_pred -----HHHHHhc--ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 143 -----KNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 143 -----~~~~~~~--~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
......+ ..+|++++|+|+++ .......+..+...+.| +++|+||+|+...... ..+..++.+.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~----~~~~~~~~~~~~ 142 (188)
T 2wjg_A 70 NSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGAN-LLLALNKMDLAKSLGI----EIDVDKLEKILG 142 (188)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCC-EEEEEECHHHHHHTTC----CCCHHHHHHHHT
T ss_pred ccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCC-EEEEEEhhhccccccc----hHHHHHHHHHhC
Confidence 1122223 34899999999875 23334455555666788 7789999998532111 112344444443
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
.+++++||+++ .|++++++.+.+.++.
T Consensus 143 -----~~~~~~Sa~~~----------~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 143 -----VKVVPLSAAKK----------MGIEELKKAISIAVKD 169 (188)
T ss_dssp -----SCEEECBGGGT----------BSHHHHHHHHHHHHTT
T ss_pred -----CCeEEEEecCC----------CCHHHHHHHHHHHHHh
Confidence 47999999998 8999999999887764
No 134
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.74 E-value=3.2e-18 Score=154.52 Aligned_cols=158 Identities=20% Similarity=0.203 Sum_probs=101.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
.+..+|+++|++|+|||||+++|.+.... . ...|+......+..++..+.+|||||+++|.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~------~-------------~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 83 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG------Q-------------HVPTLHPTSEELTIAGMTFTTFDLGGHIQAR 83 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEETTEEEEEEEECC----C
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC------c-------------cCCCCCceeEEEEECCEEEEEEECCCcHhhH
Confidence 44579999999999999999999743110 0 0011111222344566889999999999987
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC--
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK-- 215 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~-- 215 (451)
.....++..+|++++|+|+++... ......+..+. ..++| +++|+||+|+.+... . +++.+++....
T Consensus 84 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~----~~~~~~~~~~~~~ 157 (198)
T 1f6b_A 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDRPEAIS-E----ERLREMFGLYGQT 157 (198)
T ss_dssp CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTCCC-H----HHHHHHHTCTTTC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCccccCC-H----HHHHHHhCccccc
Confidence 777777889999999999987432 22223333332 24677 789999999975211 1 23334443221
Q ss_pred -------CC---CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 216 -------FP---GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 216 -------~~---~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+. ....+++++||++| +|+++++++|.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~SA~~g----------~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 158 TGKGSVSLKELNARPLEVFMCSVLKR----------QGYGEGFRWMAQYI 197 (198)
T ss_dssp CCSSCCCTTTCCSCCEEEEECBTTTT----------BSHHHHHHHHHTTC
T ss_pred ccccccccccccCceEEEEEEECCCC----------CCHHHHHHHHHHhc
Confidence 10 12468999999999 99999999997653
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=8.8e-18 Score=170.25 Aligned_cols=162 Identities=27% Similarity=0.283 Sum_probs=109.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
..++|+++|++|+|||||+|+|++.. ... .....|+|.+.....+...+..+.+|||||+.++..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~------~~~---------v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~ 243 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE------RAL---------VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 243 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST------TEE---------ECCCC------CCEEEEETTEEEEESSCSCC-----
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc------ccc---------cCCCCCCcCCceEEEEEECCEEEEEEECCCCccccc
Confidence 35899999999999999999998541 111 112236666665556677788899999999855432
Q ss_pred H------------HHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHH-HHHHHHHHHHHH
Q 013007 144 N------------MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE-LLELVEMELREL 210 (451)
Q Consensus 144 ~------------~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~-~~~~~~~~~~~~ 210 (451)
. ....+..+|++++|+|+.++...+....+..+...+.| +++|+||+|+.+..+ ..+++.+++.+.
T Consensus 244 ~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 322 (439)
T 1mky_A 244 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA-SVVVFNKWDLVVHREKRYDEFTKLFREK 322 (439)
T ss_dssp ------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSTTGGGCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCCchhhHHHHHHHHHHHH
Confidence 2 23456779999999999998887777777777778888 779999999986322 123333333333
Q ss_pred HHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+... ...|++++||++| .|+.+|++.+.+.+
T Consensus 323 ~~~~----~~~~~~~~SA~~g----------~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 323 LYFI----DYSPLIFTSADKG----------WNIDRMIDAMNLAY 353 (439)
T ss_dssp CGGG----TTSCEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred hccC----CCCcEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 3332 2368999999999 77888887776543
No 136
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.74 E-value=1.8e-18 Score=156.67 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=80.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC----CeeEEEEecCCh
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA----KRHYAHVDCPGH 138 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~----~~~i~iiDtPG~ 138 (451)
+..++|+++|+.|+|||||+++|.+.... + ..+....+..+.....+... ...+.||||||+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-----~---------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 83 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSK-----F---------LKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS 83 (208)
T ss_dssp EEEEEEEEC------------------------------------------------CEEEECTTSSEEEEEEEEETTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCc-----c---------cCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc
Confidence 45689999999999999999999854100 0 00000111112222223333 457899999999
Q ss_pred HHHHHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH------cCCCeEEEEEeeccCCC-hHHHHHHHHHHHHHH
Q 013007 139 ADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ------VGVPSLVCFLNKVDLVE-DEELLELVEMELREL 210 (451)
Q Consensus 139 ~~~~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~------~~ip~iivviNK~D~~~-~~~~~~~~~~~~~~~ 210 (451)
++|.......+..+|++++|+|+++... ......+..+.. .++| +++|+||+|+.+ .... ..+++.++
T Consensus 84 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~v---~~~~~~~~ 159 (208)
T 2yc2_C 84 DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLPPQRHQV---RLDMAQDW 159 (208)
T ss_dssp HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC-------CC---CHHHHHHH
T ss_pred HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccchhhccC---CHHHHHHH
Confidence 9999888888999999999999987432 222333334433 3566 789999999975 2211 11345566
Q ss_pred HHhcCCCCCCCCeeeccccc-cccCCCcccchhhHHHHHHHHHhhC
Q 013007 211 LSFYKFPGDEIPIIRGSATS-ALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~-g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+.++ .+++++||++ + .|+.++++.|.+.+
T Consensus 160 ~~~~~-----~~~~~~Sa~~~~----------~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 160 ATTNT-----LDFFDVSANPPG----------KDADAPFLSIATTF 190 (208)
T ss_dssp HHHTT-----CEEEECCC-----------------CHHHHHHHHHH
T ss_pred HHHcC-----CEEEEeccCCCC----------cCHHHHHHHHHHHH
Confidence 66654 5899999999 8 78888888776643
No 137
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.74 E-value=3.3e-18 Score=149.56 Aligned_cols=158 Identities=19% Similarity=0.144 Sum_probs=94.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
.++|+++|++|+|||||+++|++....... +...+.........+......+.+|||||+++|...
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 67 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH--------------EMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW 67 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------------------CEEEEEEEETTEEEEEEEECCCCC------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc--------------cCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh
Confidence 469999999999999999999743111100 000011111222223323356789999999988653
Q ss_pred -HHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc----CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 145 -MITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV----GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 145 -~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~----~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
....+..+|++++|+|+++... ....+.+..+... ++| +++|+||+|+.+..+. ..++..++.+.++
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 140 (169)
T 3q85_A 68 LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREV---SLEEGRHLAGTLS--- 140 (169)
T ss_dssp --CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGCCS---CHHHHHHHHHHTT---
T ss_pred hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhcccC---CHHHHHHHHHHcC---
Confidence 3344677999999999987322 1222333333322 677 7799999998742221 1123445555553
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||+++ .|++++++.|.+.+
T Consensus 141 --~~~~~~Sa~~~----------~~v~~l~~~l~~~i 165 (169)
T 3q85_A 141 --CKHIETSAALH----------HNTRELFEGAVRQI 165 (169)
T ss_dssp --CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CcEEEecCccC----------CCHHHHHHHHHHHH
Confidence 57999999998 89999999987654
No 138
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.74 E-value=4.3e-17 Score=157.29 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=102.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee-CCeeEEEEecCChHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-AKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~iiDtPG~~~~~~ 143 (451)
.++|+++|.+|+|||||+++|++.. ........+.|++.....+.. ++..+.+|||||+++|..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~---------------~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY---------------SAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC---------------CTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC---------------CCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhh
Confidence 4799999999999999999998431 111122346666665555543 467899999999999843
Q ss_pred -----HHHHhcccCCEEEEEEeCCCCCCccHHHHH-HHHHH-----cCCCeEEEEEeeccCCChHHHH---HHHHHHHHH
Q 013007 144 -----NMITGAAQMDGGILVVSAPDGPMPQTKEHI-LLARQ-----VGVPSLVCFLNKVDLVEDEELL---ELVEMELRE 209 (451)
Q Consensus 144 -----~~~~~~~~~d~~ilVvda~~g~~~~t~~~l-~~~~~-----~~ip~iivviNK~D~~~~~~~~---~~~~~~~~~ 209 (451)
.....+..+|++++|+|+++....+..+.| ..+.. .++| +++|+||+|+.+++++. +...+++.+
T Consensus 68 ~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~~~~~r~~~~~v~~~~~~~ 146 (307)
T 3r7w_A 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLVQLDKREELFQIMMKNLSE 146 (307)
T ss_dssp HHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEecccccchhhhhHHHHHHHHHHHH
Confidence 334455789999999999885443333222 22222 1677 78999999998733322 234456777
Q ss_pred HHHhcCCCCCCCCeeecccccc
Q 013007 210 LLSFYKFPGDEIPIIRGSATSA 231 (451)
Q Consensus 210 ~l~~~~~~~~~~pvi~~Sa~~g 231 (451)
+.+.+|+ ..++++++||++.
T Consensus 147 ~~~~~g~--~~~~~~~tSa~~~ 166 (307)
T 3r7w_A 147 TSSEFGF--PNLIGFPTSIWDE 166 (307)
T ss_dssp HHHTTTC--CSCEEEECCTTSS
T ss_pred HHHHcCC--CCeEEEEeeecCC
Confidence 8887765 2478999999873
No 139
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=1.7e-17 Score=157.52 Aligned_cols=167 Identities=17% Similarity=0.217 Sum_probs=97.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChH--
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHA-- 139 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~-- 139 (451)
..++|+++|++|+|||||+|+|++.. .+.... .........+++++.....+...+ ..+++|||||+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~------~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTD------LYSPEY--PGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSC------C-----------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCC------ccccCC--CCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 46899999999999999999997431 111000 000011123344444444444444 479999999972
Q ss_pred -------------------HHHHHHHHh------cccCCEEEEEEeCCC-CCCccHHHHHHHHHHcCCCeEEEEEeeccC
Q 013007 140 -------------------DYVKNMITG------AAQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (451)
Q Consensus 140 -------------------~~~~~~~~~------~~~~d~~ilVvda~~-g~~~~t~~~l~~~~~~~ip~iivviNK~D~ 193 (451)
.|+...... -..+|+++++++... +......+.+..+.. ++| +|+|+||+|+
T Consensus 79 ~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~p-vi~V~nK~D~ 156 (274)
T 3t5d_A 79 VDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKADT 156 (274)
T ss_dssp SCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSC-EEEEESSGGG
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCC-EEEEEeccCC
Confidence 222221111 012779999997654 778888888877776 788 7799999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 194 VEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
....+ .+..++.+.+.++..+ ++++++||.++ +++.++++.|.+.+|
T Consensus 157 ~~~~e-~~~~~~~i~~~l~~~~-----i~v~~~sa~~~----------~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 157 LTPEE-CQQFKKQIMKEIQEHK-----IKIYEFPETDD----------EEENKLVKKIKDRLP 203 (274)
T ss_dssp SCHHH-HHHHHHHHHHHHHHTT-----CCCCCC---------------------CHHHHHTCS
T ss_pred CCHHH-HHHHHHHHHHHHHHcC-----CeEEcCCCCCC----------hhHHHHHHHHhcCCC
Confidence 87544 3344455666666543 57899999988 889999999988766
No 140
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.74 E-value=5.8e-18 Score=154.73 Aligned_cols=163 Identities=16% Similarity=0.078 Sum_probs=107.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEE-eeEEEeeeCCeeEEEEecCChHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA-TAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
...++|+++|..|+|||||+++|++....... ...+... .....+......+.||||||+++|
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 88 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETY----------------VPTVFENYTACLETEEQRVELSLWDTSGSPYY 88 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSC----------------CCCSEEEEEEEEEC--CEEEEEEEEECCSGGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCc----------------CCeeeeeEEEEEEECCEEEEEEEEECCCCHhH
Confidence 45689999999999999999999854211000 0011111 112223334467899999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccH--HHHHHHHHHc--CCCeEEEEEeeccCCChHHHHH---------HHHHHHH
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVCFLNKVDLVEDEELLE---------LVEMELR 208 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t--~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~---------~~~~~~~ 208 (451)
.......++.+|++|+|+|+++...-.. ...+..+... ++| +++|.||+|+.++..... ...++..
T Consensus 89 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 167 (214)
T 3q3j_B 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC 167 (214)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence 8877788899999999999987433222 2333444443 666 779999999975321111 0112445
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhh-HHHHHHHHHhhCC
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKA-ILKLMDAVDEYIP 256 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~-i~~Ll~~l~~~lp 256 (451)
++.+.+++ .+++++||+++ .| +.++++.|.+.+.
T Consensus 168 ~~~~~~~~----~~~~e~SA~~g----------~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 168 AIAKQLGA----EIYLEGSAFTS----------EKSIHSIFRTASMLCL 202 (214)
T ss_dssp HHHHHHTC----SEEEECCTTTC----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC----CEEEEeccCCC----------cccHHHHHHHHHHHHh
Confidence 56666543 38999999999 88 9999999987654
No 141
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=150.86 Aligned_cols=162 Identities=19% Similarity=0.063 Sum_probs=103.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
...++|+++|+.|+|||||+++|.+....... . ..+.+.....+..++ ..+.+|||||+++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~----------------~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEY----------------I-PTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-------------------------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCC----------------C-CcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence 45689999999999999999999854211000 0 111111112233334 4677999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccHH--HHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHH---------HHHH
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLELV---------EMEL 207 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t~--~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~---------~~~~ 207 (451)
|.......+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+.....+.+ .++.
T Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp CSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred HHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 877666778899999999999874322221 222333332 677 77999999997533221111 1234
Q ss_pred HHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 208 RELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 208 ~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
..+.+.++. .+++++||+++ .|++++++.|.+.+.
T Consensus 160 ~~~~~~~~~----~~~~~~Sa~~g----------~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 160 KLLAEEIKA----ASYIECSALTQ----------KNLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHHHHHTC----SEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred HHHHHhcCC----cEEEEEecCCC----------CCHHHHHHHHHHHHh
Confidence 455555543 48999999999 899999999877553
No 142
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.74 E-value=3.9e-18 Score=173.64 Aligned_cols=154 Identities=21% Similarity=0.194 Sum_probs=112.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC-------
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG------- 137 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG------- 137 (451)
..+|+++|.+|+|||||+|+|++. ... ..+...|+|.+......++.+..+.+|||||
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~------~~~---------~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~ 87 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGE------RIS---------IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP 87 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEE------EEC--------------------CEEEECTTCSSCCEEECCCC------C
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC------CCc---------ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchH
Confidence 469999999999999999999743 111 1122347888777777777888999999999
Q ss_pred -hHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 138 -HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 138 -~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
+++|...+..++..+|++|+|+|+.++......+.+..+...++| +++|+||+|+.+... ...++. .+++
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~p-vilV~NK~D~~~~~~-------~~~e~~-~lg~ 158 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDNTEMRA-------NIYDFY-SLGF 158 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSC-EEEEEECC----------------CCSG-GGSS
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCC-EEEEEECccchhhhh-------hHHHHH-HcCC
Confidence 788888888889999999999999999999999988888888998 779999999864211 111221 2233
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
-+++++||.+| .|+.+|++.+.+.++
T Consensus 159 ----~~~~~iSA~~g----------~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 159 ----GEPYPISGTHG----------LGLGDLLDAVAEHFK 184 (456)
T ss_dssp ----SSEEECCTTTC----------TTHHHHHHHHHTTGG
T ss_pred ----CceEEeecccc----------cchHHHHHHHHhhcc
Confidence 34679999998 899999999988775
No 143
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.74 E-value=9.8e-18 Score=152.22 Aligned_cols=162 Identities=15% Similarity=0.076 Sum_probs=104.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe-eEEEeeeCCeeEEEEecCChHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT-AHVEYETAKRHYAHVDCPGHAD 140 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~i~iiDtPG~~~ 140 (451)
.+..++|+++|..|+|||||+++|.+....... ...+.... ....+......+.||||||+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 88 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENY----------------VPTVFENYTASFEIDTQRIELSLWDTSGSPY 88 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----------------CCCSEEEEEEEEESSSSEEEEEEEEECCSGG
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----------------CCccceeEEEEEEECCEEEEEEEEeCCCcHh
Confidence 345689999999999999999999854211000 00111111 1122233346789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccH--HHHHHHHHH--cCCCeEEEEEeeccCCChHHHHHHH---------HHHH
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQ--VGVPSLVCFLNKVDLVEDEELLELV---------EMEL 207 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t--~~~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~~---------~~~~ 207 (451)
|.......+..+|++++|+|+++...... ...+..+.. .++| +++|.||+|+.++......+ .++.
T Consensus 89 ~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 167 (205)
T 1gwn_A 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQG 167 (205)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred hhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhccchhhhhhhcccccCCCCHHHH
Confidence 87777777889999999999987322111 122233333 2566 78999999997533222111 1245
Q ss_pred HHHHHhcCCCCCCCCeeecccc-ccccCCCcccchhhHHHHHHHHHhh
Q 013007 208 RELLSFYKFPGDEIPIIRGSAT-SALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 208 ~~~l~~~~~~~~~~pvi~~Sa~-~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.++.+.++. .+++++||+ ++ .|++++++.|.+.
T Consensus 168 ~~~~~~~~~----~~~~e~SAk~~~----------~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 168 ANMAKQIGA----ATYIECSALQSE----------NSVRDIFHVATLA 201 (205)
T ss_dssp HHHHHHHTC----SEEEECCTTTCH----------HHHHHHHHHHHHH
T ss_pred HHHHHHcCC----CEEEEeeeccCC----------cCHHHHHHHHHHH
Confidence 566666542 579999998 57 8999999988764
No 144
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.74 E-value=5e-18 Score=151.35 Aligned_cols=157 Identities=18% Similarity=0.155 Sum_probs=100.4
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
..+.++|+++|..|+|||||+++|++...... ..+. +... .....+......+.||||||+++|
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-----------~~~t----~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 80 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQE-----------ESPE----GGRF-KKEIVVDGQSYLLLIRDEGGPPEL 80 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-----------CCTT----CEEE-EEEEEETTEEEEEEEEECSSSCCH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------cCCC----cceE-EEEEEECCEEEEEEEEECCCChhh
Confidence 45678999999999999999999985411100 0000 1111 112222222356788999999987
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
. .++.+|++++|+|+++....+. ...+..+.. .++| +++|.||+|+.+.... ..-.++..++.+.++.
T Consensus 81 ~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~-~v~~~~~~~~~~~~~~ 153 (184)
T 3ihw_A 81 Q-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISAANPR-VIDDSRARKLSTDLKR 153 (184)
T ss_dssp H-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBTTBCC-CSCHHHHHHHHHHTTT
T ss_pred h-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc-ccCHHHHHHHHHHcCC
Confidence 6 5667999999999987433222 233333333 3567 7799999998521100 0011244556666542
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||+++ .|++++++.|.+.+
T Consensus 154 ----~~~~e~Sa~~~----------~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 154 ----CTYYETCATYG----------LNVERVFQDVAQKV 178 (184)
T ss_dssp ----CEEEEEBTTTT----------BTHHHHHHHHHHHH
T ss_pred ----CeEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 68999999998 89999999887643
No 145
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.74 E-value=3.1e-18 Score=153.02 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=105.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
++.++|+++|++|+|||||+++|.+.. +. .. ..|+......+...+..+.+|||||+++|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~-------~~-----~~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGD-------VV-----TT-------VPTVGVNLETLQYKNISFEVWDLGGQTGVR 80 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSC-------CE-----EE-------CSSTTCCEEEEEETTEEEEEEEECCSSSSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCC-------CC-----Cc-------CCCCceEEEEEEECCEEEEEEECCCCHhHH
Confidence 456899999999999999999996321 00 00 001111222344467889999999999887
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......+..+|++++|+|+++...- ...+.+..+.. .++| +++|+||+|+.+.... + ++.+.+......
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~----~~~~~~~~~~~~ 154 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDLPDAASE-A----EIAEQLGVSSIM 154 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTCCCH-H----HHHHHTTGGGCC
T ss_pred HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCCCCH-H----HHHHHhChhhcc
Confidence 7666678899999999999875432 22233333322 2566 7899999999764221 1 122222111122
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
...++++++||+++ .|++++++.|.+.++
T Consensus 155 ~~~~~~~~~Sa~~~----------~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 155 NRTWTIVKSSSKTG----------DGLVEGMDWLVERLR 183 (189)
T ss_dssp SSCEEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred CCceEEEEccCCCc----------cCHHHHHHHHHHHHH
Confidence 23468999999998 899999999987654
No 146
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.1e-18 Score=157.45 Aligned_cols=160 Identities=18% Similarity=0.128 Sum_probs=104.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
...++|+++|++|+|||||+++|.+..... +....++.+.....+...+ ..+.||||||+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM----------------DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC----------------CCCCcccceeEEEEEEECCEEEEEEEEECCCccc
Confidence 456899999999999999999998541110 0111122222222233334 5789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
|.......+..+|++|+|+|+++....+. ...+..+... ++| +++|+||+|+.+..+.. .++..++.+..+
T Consensus 75 ~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~- 149 (223)
T 3cpj_B 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDLAHLRAVP---TEESKTFAQENQ- 149 (223)
T ss_dssp TTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGGGGGCCSC---HHHHHHHHHHTT-
T ss_pred hhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccC---HHHHHHHHHHcC-
Confidence 98777778889999999999987433222 2233333332 566 78999999997522110 123444555543
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
++++++||+++ .|+++++++|.+.+..
T Consensus 150 ----~~~~~~Sa~~~----------~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 150 ----LLFTETSALNS----------ENVDKAFEELINTIYQ 176 (223)
T ss_dssp ----CEEEECCCC-C----------CCHHHHHHHHHHHHTT
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHHHHH
Confidence 58999999998 8999999999877653
No 147
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.73 E-value=8.9e-19 Score=160.78 Aligned_cols=160 Identities=14% Similarity=0.048 Sum_probs=108.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
....++|+++|.+|+|||||+++|+....... .....|.+.......+......+.||||||+++|
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 77 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKK--------------YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCE--------------EETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceeEEEEEEEECCEEEEEEEEeCCChHHH
Confidence 44568999999999999999999654321110 0112245555555555445567899999999998
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.......+..+|++++|+|+++....+. ...+..+... ++| +++|+||+|+.+.... .+...+.+..+
T Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~--- 148 (221)
T 3gj0_A 78 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKVK-----AKSIVFHRKKN--- 148 (221)
T ss_dssp SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSSCSSC-----GGGCCHHHHHT---
T ss_pred hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCcccccccc-----HHHHHHHHHcC---
Confidence 7777778889999999999987433222 2223333322 677 7799999999753211 12223333333
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++++||+++ .|+.+++++|.+.+.
T Consensus 149 --~~~~~~Sa~~~----------~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 149 --LQYYDISAKSN----------YNFEKPFLWLARKLI 174 (221)
T ss_dssp --CEEEECBGGGT----------BTTTHHHHHHHHHHH
T ss_pred --CEEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999998 888888888877653
No 148
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.73 E-value=5e-18 Score=155.24 Aligned_cols=158 Identities=17% Similarity=0.126 Sum_probs=105.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEee--EEEeeeCCeeEEEEecCChHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA--HVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
+.++|+++|..++|||||+++++.... ..+....+..+.. ..........+.||||+|+++|
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f----------------~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~ 75 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSF----------------DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERF 75 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC----------------C----------CEEEEEECSSCEEEEEEECCSCTTTC
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCC----------------CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhh
Confidence 357999999999999999999984311 1111111222222 2223333456789999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......+++.+|++++|+|.++... ......+..+.. .++| +|+|.||+|+.+.... -.++..++.+.++
T Consensus 76 ~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~r~V---~~~e~~~~a~~~~-- 149 (216)
T 4dkx_A 76 RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADKRQV---SIEEGERKAKELN-- 149 (216)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGGCCS---CHHHHHHHHHHHT--
T ss_pred hhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHhcCcc---cHHHHhhHHHHhC--
Confidence 8888888999999999999987322 222333333332 3566 8899999998753211 1134556666665
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++++||++| .|++++++.|.+.++
T Consensus 150 ---~~~~e~SAktg----------~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 150 ---VMFIETSAKAG----------YNVKQLFRRVAAALP 175 (216)
T ss_dssp ---CEEEEEBTTTT----------BSHHHHHHHHHHHC-
T ss_pred ---CeeEEEeCCCC----------cCHHHHHHHHHHHHH
Confidence 47999999999 999999999988775
No 149
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.58 E-value=2e-19 Score=163.02 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=104.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
.+..++|+++|.+|+|||||+++|++........... +... .....+......+.+|||||+++|
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 91 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDNY-SANVMVDGKPVNLGLWDTAGQEDY 91 (204)
Confidence 4567899999999999999999998542211000000 0000 011122223455779999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHH--HHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHH---------HHHHH
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLELV---------EMELR 208 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~--~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~---------~~~~~ 208 (451)
.......+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+.....+.+ .++..
T Consensus 92 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 3th5_A 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
Confidence 88888888999999999999875433322 233333333 677 77999999997643221111 11223
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
++.+.++. .+++++||++| .|++++++.|.+.
T Consensus 171 ~~~~~~~~----~~~~~vSA~~g----------~gi~~l~~~l~~~ 202 (204)
T 3th5_A 171 AMAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRA 202 (204)
Confidence 33333322 38999999999 8999999888653
No 150
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.73 E-value=2.1e-18 Score=163.28 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=105.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH--
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV-- 142 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~-- 142 (451)
.++|+++|++|+|||||+|+|++..... ....|+|++.....+.. +..+.+|||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v----------------~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~ 65 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRV----------------GNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPY 65 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCC----------------CSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcc----------------cCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCC
Confidence 4699999999999999999998531111 11126777665555655 6789999999987763
Q ss_pred ----HHHHHhc--ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 143 ----KNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 143 ----~~~~~~~--~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
......+ ..+|++++|+|+++. ......+..+...++| +++|+||+|+.+.... ..+...+.+.++
T Consensus 66 ~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~----~~~~~~l~~~lg- 137 (272)
T 3b1v_A 66 SPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIP-VTIALNMIDVLDGQGK----KINVDKLSYHLG- 137 (272)
T ss_dssp SHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSC-EEEEEECHHHHHHTTC----CCCHHHHHHHHT-
T ss_pred ChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCC-EEEEEEChhhCCcCCc----HHHHHHHHHHcC-
Confidence 1122233 369999999999762 2233344455567899 7799999997532111 112334444443
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+|++++||++| .|+++|++.+.+.+.
T Consensus 138 ----~~vi~~SA~~g----------~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 138 ----VPVVATSALKQ----------TGVDQVVKKAAHTTT 163 (272)
T ss_dssp ----SCEEECBTTTT----------BSHHHHHHHHHHSCT
T ss_pred ----CCEEEEEccCC----------CCHHHHHHHHHHHHh
Confidence 58999999999 999999999988654
No 151
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.73 E-value=1.8e-17 Score=154.92 Aligned_cols=167 Identities=17% Similarity=0.124 Sum_probs=108.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh----
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH---- 138 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~---- 138 (451)
.+.++|+++|++|+|||||+|+|++... +.. .....++|.......+...+..++||||||.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~------~~~--------~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 84 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRR------FFS--------RLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQ 84 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCC------C-----------------CCSCEEEEEEETTEEEEEEECCSCSSTT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCC------ccc--------cCCCCCccccEEEEEEEECCcEEEEEECCCCCCCC
Confidence 4568999999999999999999985411 100 0011235555555556677899999999996
Q ss_pred ----HHHHHHHHHhc----ccCCEEEEEEeCCCCCCccHHHHHHHHHHc------CCCeEEEEEeeccCCChHHHHHHHH
Q 013007 139 ----ADYVKNMITGA----AQMDGGILVVSAPDGPMPQTKEHILLARQV------GVPSLVCFLNKVDLVEDEELLELVE 204 (451)
Q Consensus 139 ----~~~~~~~~~~~----~~~d~~ilVvda~~g~~~~t~~~l~~~~~~------~ip~iivviNK~D~~~~~~~~~~~~ 204 (451)
+++...+..++ ..+|++|+|+|++. ....+...+..+... +.| +|++.||+|+.+. ...+.+.
T Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~-iilv~nK~Dl~~~-~~~~~l~ 161 (247)
T 3lxw_A 85 VSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWM-VIVFTRKEDLAGG-SLHDYVS 161 (247)
T ss_dssp HHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGE-EEEEECGGGGTTC-CHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccE-EEEEEchHhcCCC-CHHHHHh
Confidence 55666666555 88999999999975 556666666666553 566 7799999999752 1112221
Q ss_pred ----HHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 205 ----MELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 205 ----~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+.++.+++.++. .+.++..++.+.. ...++.+|++.+.+.++
T Consensus 162 ~~~~~~l~~l~~~~g~---~~~~~~~~~~~~~-------~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 162 NTENRALRELVAECGG---RVCAFDNRATGRE-------QEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp HCCCHHHHHHHHHTTT---CEEECCTTCCHHH-------HHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHcCC---eEEEEeCCCCccc-------cHHHHHHHHHHHHHHHH
Confidence 346777777654 2223333332210 12789999999988775
No 152
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.73 E-value=5.9e-18 Score=151.22 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=98.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
....++|+++|..|+|||||+++|.+....... .+ ..+.+. .....+......+.||||||+++|
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~-----------~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEY-----------DP---NLEDTY-SSEETVDHQPVHLRVMDTADLDTP 82 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCC-----------CT---TCCEEE-EEEEEETTEEEEEEEEECCC---C
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCccc-----------CC---Ccccee-eEEEEECCEEEEEEEEECCCCCcc
Confidence 455789999999999999999999854211000 00 001111 111222223356889999999887
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHH------cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhc
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~------~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~ 214 (451)
.. +...+..+|++++|+|+++...- .....+..+.. .++| +++|+||+|+.+.... ..++..++.+.+
T Consensus 83 ~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~~~~~ 157 (187)
T 3c5c_A 83 RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYRQV---TKAEGVALAGRF 157 (187)
T ss_dssp CC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGCSS---CHHHHHHHHHHH
T ss_pred hh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcCcc---CHHHHHHHHHHc
Confidence 54 34577889999999999863221 12223333332 3677 7899999998642211 112344555555
Q ss_pred CCCCCCCCeeeccc-cccccCCCcccchhhHHHHHHHHHhhC
Q 013007 215 KFPGDEIPIIRGSA-TSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 215 ~~~~~~~pvi~~Sa-~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+ ++++++|| +++ .|++++++.|.+.+
T Consensus 158 ~-----~~~~e~Sa~~~g----------~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 158 G-----CLFFEVSACLDF----------EHVQHVFHEAVREA 184 (187)
T ss_dssp T-----CEEEECCSSSCS----------HHHHHHHHHHHHHH
T ss_pred C-----CcEEEEeecCcc----------ccHHHHHHHHHHHH
Confidence 4 47999999 888 99999999987654
No 153
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.73 E-value=4.1e-18 Score=165.98 Aligned_cols=159 Identities=19% Similarity=0.154 Sum_probs=104.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+..++|+++|++|+|||||+++|++.. +. . . ..|+......+...+..+.||||||+++|.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~-------~~-----~-----~--~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGE-------IV-----T-----T--IPTIGFNVETVEYKNISFTVWDVGGQDKIR 223 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSC-------CE-----E-----E--EEETTEEEEEEEETTEEEEEEECC-----C
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCC-------CC-----C-----c--ccccceEEEEEecCcEEEEEEECCCCHhHH
Confidence 345799999999999999999997421 00 0 0 013333344456678899999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCc-cHHHHH-HHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMP-QTKEHI-LLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l-~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
.....++..+|++|+|+|+++...- ...+.+ .++... ++| +|+|+||+|+.+.... + ++...+......
T Consensus 224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~-~----~i~~~~~~~~~~ 297 (329)
T 3o47_A 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLR 297 (329)
T ss_dssp CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHHTCTTCC
T ss_pred HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCcccCH-H----HHHHHhchhhhh
Confidence 8888888999999999999864332 222222 222222 666 7899999999863221 1 222222222222
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
...++++++||++| .|+++|++.|.+.+.
T Consensus 298 ~~~~~~~~vSAk~g----------~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 298 HRNWYIQATCATSG----------DGLYEGLDWLSNQLR 326 (329)
T ss_dssp SSCEEEEECBTTTT----------BTHHHHHHHHHHHHT
T ss_pred cCCCEEEEEECCCC----------cCHHHHHHHHHHHHH
Confidence 34578999999999 899999999987654
No 154
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.72 E-value=5.5e-17 Score=144.60 Aligned_cols=154 Identities=23% Similarity=0.319 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC--------
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG-------- 137 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG-------- 137 (451)
++|+++|++|+|||||+++|.+... ..+...++|.......+. .+.+|||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV----------------RRGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC----------------SSSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC----------------ccCCCCCccceeEEEecC----CEEEEECCCccccccCC
Confidence 5899999999999999999985311 111122444443333332 689999999
Q ss_pred ---hHHHHHHHHHh----cccCCEEEEEEeCCC-----------CCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHH
Q 013007 138 ---HADYVKNMITG----AAQMDGGILVVSAPD-----------GPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEEL 199 (451)
Q Consensus 138 ---~~~~~~~~~~~----~~~~d~~ilVvda~~-----------g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~ 199 (451)
++.|....... ...+++++.|+|+.. +...++.+.+..+...++| +++|+||+|+.+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-- 138 (190)
T 2cxx_A 62 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDKIKNV-- 138 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGGCSCH--
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-eEEEeehHhccCcH--
Confidence 66665554443 445778888888764 2223344455556667888 77999999998743
Q ss_pred HHHHHHHHHHHHHhcCCCC--CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 200 LELVEMELRELLSFYKFPG--DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 200 ~~~~~~~~~~~l~~~~~~~--~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+...++.+.++..- ...+++++||++| .|++++++.|.+.+.
T Consensus 139 ----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~----------~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 139 ----QEVINFLAEKFEVPLSEIDKVFIPISAKFG----------DNIERLKNRIFEVIR 183 (190)
T ss_dssp ----HHHHHHHHHHHTCCGGGHHHHEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhhhhhhccCCcEEEEecCCC----------CCHHHHHHHHHHhcc
Confidence 123445555555410 0236899999999 899999999987654
No 155
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=149.94 Aligned_cols=160 Identities=19% Similarity=0.130 Sum_probs=101.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe--eEEEeeeCCeeEEEEecCChH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYETAKRHYAHVDCPGHA 139 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~~~~~~i~iiDtPG~~ 139 (451)
....++|+++|.+|+|||||+++|++.... .. ...+++.+. ..+.+......+.+|||||++
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~--------------~~--~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGD--------------SA--HEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECC--------------GG--GTTTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCC--------------cc--CCCCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence 345689999999999999999999632100 00 011122222 222232223467899999998
Q ss_pred HHHH-HHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 140 DYVK-NMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 140 ~~~~-~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
+|.. .....++.+|++++|+|+++... ......+..+.. .++| +++|.||+|+.+..... .++..++.+.
T Consensus 84 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~a~~ 159 (195)
T 3cbq_A 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREVS---LEEGRHLAGT 159 (195)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCTTTCCSC---HHHHHHHHHH
T ss_pred cchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhccccCCcC---HHHHHHHHHH
Confidence 7654 33445678999999999986322 222333333332 3677 77999999997532110 1233445555
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++ .+++++||+++ .|++++++.|.+.+.
T Consensus 160 ~~-----~~~~e~Sa~~~----------~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 160 LS-----CKHIETSAALH----------HNTRELFEGAVRQIR 187 (195)
T ss_dssp TT-----CEEEEEBTTTT----------BSHHHHHHHHHHHHH
T ss_pred hC-----CEEEEEcCCCC----------CCHHHHHHHHHHHHH
Confidence 43 57999999998 899999999987665
No 156
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.7e-17 Score=149.22 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=100.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
++.++|+++|++|+|||||+++|.+....... . ...+... .....+......+.||||||+++ .
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-----------~---~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~ 89 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-----------D---PTLESTY-RHQATIDDEVVSMEILDTAGQED-T 89 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-----------C---TTCCEEE-EEEEEETTEEEEEEEEECCCCCC-C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccc-----------C---CCCCceE-EEEEEECCEEEEEEEEECCCCCc-c
Confidence 45689999999999999999999854111000 0 0001111 11122222345689999999987 5
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......+..+|++++|+|+++... ......+..+.. .++| +++|+||+|+.+..+.. .++..++.+.++
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~~-- 163 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQVS---TEEGEKLATELA-- 163 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCSC---HHHHHHHHHHHT--
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECcccccccccC---HHHHHHHHHHhC--
Confidence 555566788999999999987321 222223333322 4677 77999999997521110 123334444443
Q ss_pred CCCCCeeeccccccccCCCcccchh-hHHHHHHHHHhhC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKK-AILKLMDAVDEYI 255 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~-~i~~Ll~~l~~~l 255 (451)
++++++||+++ . |+.++++.|.+.+
T Consensus 164 ---~~~~~~Sa~~g----------~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 164 ---CAFYECSACTG----------EGNITEIFYELCREV 189 (196)
T ss_dssp ---SEEEECCTTTC----------TTCHHHHHHHHHHHH
T ss_pred ---CeEEEECCCcC----------CcCHHHHHHHHHHHH
Confidence 57999999998 8 8999999887654
No 157
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.71 E-value=3.8e-19 Score=160.56 Aligned_cols=159 Identities=17% Similarity=0.109 Sum_probs=99.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
...++|+++|++|+|||||+++|++. ....+...+++.+.....+...+ ..+.||||||+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADD----------------TYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCC----------------CCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC----------------CCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 45689999999999999999998732 11112222333333333333444 5789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
|.......+..+|++++|+|+++....+. ...+..+... ++| +++|+||+|+.+..... .++...+.+.++
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~v~---~~~~~~~~~~~~- 169 (199)
T 3l0i_B 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVD---YTTAKEFADSLG- 169 (199)
T ss_dssp CCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC--CCCC---SCC-CHHHHTTT-
T ss_pred HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC-EEEEEECccCCccccCC---HHHHHHHHHHcC-
Confidence 87777777889999999999987433222 2233333333 566 77899999997532110 012334444443
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++++||+++ .|+++++++|.+.+.
T Consensus 170 ----~~~~~vSA~~g----------~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 170 ----IPFLETSAKNA----------TNVEQSFMTMAAEIK 195 (199)
T ss_dssp ----CCBCCCCC-------------HHHHHHHHHHTTTTT
T ss_pred ----CeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 57999999999 999999999987654
No 158
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.71 E-value=2e-17 Score=168.36 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=110.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH-HH--
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA-DY-- 141 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~-~~-- 141 (451)
..+|+++|.+|+|||||+|+|++... .......++|.+.....+..++..+.||||||+. ++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~---------------a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~ 307 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDR---------------AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETND 307 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTB---------------CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCT
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCC---------------CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchh
Confidence 37999999999999999999996511 0111223566666555566678899999999988 54
Q ss_pred ------HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 142 ------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 142 ------~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
...+...+..+|++|+|+|++++...+..+.+..+ .++| +++|+||+|+.+... .+ ++.+++ +
T Consensus 308 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~p-iivV~NK~DL~~~~~-~~----~~~~~~---~ 376 (482)
T 1xzp_A 308 LVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKR-YLVVINKVDVVEKIN-EE----EIKNKL---G 376 (482)
T ss_dssp TCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSS-EEEEEEECSSCCCCC-HH----HHHHHH---T
T ss_pred hHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCC-EEEEEECcccccccC-HH----HHHHHh---c
Confidence 24456678889999999999987766666555544 3677 779999999975311 11 222322 1
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
...|++++||+++ .|+++|+++|.+.+.
T Consensus 377 ---~~~~~i~iSAktg----------~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 377 ---TDRHMVKISALKG----------EGLEKLEESIYRETQ 404 (482)
T ss_dssp ---CSTTEEEEEGGGT----------CCHHHHHHHHHHHTH
T ss_pred ---CCCcEEEEECCCC----------CCHHHHHHHHHHHHh
Confidence 2368999999999 889999998887543
No 159
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.70 E-value=4.2e-17 Score=145.17 Aligned_cols=166 Identities=16% Similarity=0.140 Sum_probs=99.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee-----eCCeeEEEEecCChH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-----TAKRHYAHVDCPGHA 139 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-----~~~~~i~iiDtPG~~ 139 (451)
.++|+++|.+|+|||||+++|.+.... + ..+....+.++.....+. .....+.+|||||++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~-----~---------~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKS-----D---------LGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-------------------------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCc-----c---------CCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 369999999999999999999853100 0 000011122222222221 134678999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCC--CccHHHHHHHHHH--cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~--~~~t~~~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
+|.......++.+|++++|+|.+++. .......+..+.. .+.| +++|.||+|+.+.....+...+...++.+.++
T Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T 2zej_A 68 EFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTHLDVSDEKQRKACMSKITKELLNKRG 146 (184)
T ss_dssp HHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCE-EEEEEECGGGCCHHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCc-EEEEEECCCcccchhhHHHHHHHHHHHHHhcC
Confidence 98776666677899999999998752 1222333333332 2566 77889999998643322112222233333333
Q ss_pred CCCCCCCeeeccccccccCCCcccchh-hHHHHHHHHHhhCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKK-AILKLMDAVDEYIP 256 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~-~i~~Ll~~l~~~lp 256 (451)
+. ...+++++||+++ . ++.+|++.|.+.++
T Consensus 147 ~~-~~~~~~~~Sa~~~----------~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 147 FP-AIRDYHFVNATEE----------SDALAKLRKTIINESL 177 (184)
T ss_dssp SC-EEEEEEECCTTSC----------CHHHHHHHHHHHHHHH
T ss_pred Cc-chhheEEEecccC----------chhHHHHHHHHHHHHh
Confidence 21 0113899999988 5 89999999877655
No 160
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=147.95 Aligned_cols=169 Identities=11% Similarity=0.131 Sum_probs=101.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh---
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH--- 138 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~--- 138 (451)
....++|+++|++|+|||||+|+|++..... ......++|.......+...+..+.||||||+
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~ 91 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFH--------------SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDT 91 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSC--------------C-------CCSCEEEEEEETTEEEEEEECCSCC--
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCc--------------cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCC
Confidence 3456899999999999999999999541100 00111245555555566677889999999993
Q ss_pred --------HHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHH-----HcCCCeEEEEEeeccCCChHHHHHHH--
Q 013007 139 --------ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR-----QVGVPSLVCFLNKVDLVEDEELLELV-- 203 (451)
Q Consensus 139 --------~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~-----~~~ip~iivviNK~D~~~~~~~~~~~-- 203 (451)
..+...+......+|++|+|+|++. ......+.+..+. ....| +++|+||+|+.+.....+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~i~~ 169 (239)
T 3lxx_A 92 EVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSF-MILIFTRKDDLGDTNLHDYLRE 169 (239)
T ss_dssp ---CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGG-EEEEEECGGGC-----------
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccce-EEEEEeCCccCCcccHHHHHHh
Confidence 3455666666678899999999974 3334444444332 22346 77899999998643322222
Q ss_pred -HHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 204 -EMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 204 -~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+.++++++.++. .+++.++..+. .....++.+|++.+...+.
T Consensus 170 ~~~~l~~l~~~~~~-----~~~~~~~~~~~-----~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 170 APEDIQDLMDIFGD-----RYCALNNKATG-----AEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp -CHHHHHHHHHHSS-----SEEECCTTCCH-----HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCC-----EEEEEECCCCc-----cccHHHHHHHHHHHHHHHH
Confidence 2356777777653 34444433110 0112678889988877653
No 161
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.69 E-value=2.7e-17 Score=145.18 Aligned_cols=154 Identities=15% Similarity=0.093 Sum_probs=95.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
.+.++|+++|..|+|||||+++|.+..... . ....+... .....+......+.+|||||++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~--------------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~- 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-L--------------EKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA- 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-C--------------SSCSSSEE-EEEEEETTEEEEEEEEECSSSCCH-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-c--------------CCCcceeE-EEEEEECCEEEEEEEEECCCCchh-
Confidence 456899999999999999999998642110 0 00001111 112222222356889999999873
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHHH-HHHHHH------cCCCeEEEEEeeccCCC--hHHHHHHHHHHHHHHHHh
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEH-ILLARQ------VGVPSLVCFLNKVDLVE--DEELLELVEMELRELLSF 213 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~~-l~~~~~------~~ip~iivviNK~D~~~--~~~~~~~~~~~~~~~l~~ 213 (451)
..++.+|++++|+|+++....+.... +..+.. .++| +++|.||+|+.+ .... ..++..++.+.
T Consensus 68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~v---~~~~~~~~~~~ 139 (178)
T 2iwr_A 68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQDRISASSPRVV---GDARARALXAD 139 (178)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCE-EEEEEECTTCBTTBCCCS---CHHHHHHHHHH
T ss_pred ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccCcC---CHHHHHHHHHh
Confidence 34567999999999987432222222 112222 2566 789999999842 1110 01233444444
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++ ..+++++||++| .|++++++.|.+.+
T Consensus 140 ~~----~~~~~~~Sa~~~----------~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 140 MK----RCSYYETXATYG----------LNVDRVFQEVAQKV 167 (178)
T ss_dssp HS----SEEEEEEBTTTT----------BTHHHHHHHHHHHH
T ss_pred hc----CCeEEEEecccc----------CCHHHHHHHHHHHH
Confidence 32 368999999998 88999998887654
No 162
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.69 E-value=6.7e-17 Score=157.55 Aligned_cols=155 Identities=17% Similarity=0.197 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC-eeEEEEecCChHH----
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHAD---- 140 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~---- 140 (451)
.+|+++|.+|+|||||+++|++..... +.....|.......+...+ ..+.||||||+.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i----------------~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~ 222 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKI----------------ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 222 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEE----------------SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCcc----------------ccCCccccCceEEEEEeCCCceEEEecCCCCcccccc
Confidence 479999999999999999997431100 0111233333333344444 7899999999754
Q ss_pred ---HHHHHHHhcccCCEEEEEEeCCCCC----CccHHHHHHHHHH-----cCCCeEEEEEeeccCCChHHHHHHHHHHHH
Q 013007 141 ---YVKNMITGAAQMDGGILVVSAPDGP----MPQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELR 208 (451)
Q Consensus 141 ---~~~~~~~~~~~~d~~ilVvda~~g~----~~~t~~~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~~~~~~~ 208 (451)
+....++.+..+|++|+|+|+++.. ..+....+..+.. .++| +++|+||+|+.+..+ .+.
T Consensus 223 ~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV~NK~Dl~~~~e-------~~~ 294 (342)
T 1lnz_A 223 GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVANKMDMPEAAE-------NLE 294 (342)
T ss_dssp TTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEECTTSTTHHH-------HHH
T ss_pred cchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEEEECccCCCCHH-------HHH
Confidence 3455566667799999999998621 1222333344444 3677 668999999986432 233
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
++.+.+.. ..+++++||+++ .++++|+++|.+.+..
T Consensus 295 ~l~~~l~~---~~~v~~iSA~tg----------~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 295 AFKEKLTD---DYPVFPISAVTR----------EGLRELLFEVANQLEN 330 (342)
T ss_dssp HHHHHCCS---CCCBCCCSSCCS----------STTHHHHHHHHHHHTS
T ss_pred HHHHHhhc---CCCEEEEECCCC----------cCHHHHHHHHHHHHhh
Confidence 34444432 268999999998 8999999999887753
No 163
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.69 E-value=7.6e-17 Score=166.12 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=109.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+..++|+++|.+|+|||||+++|++.. +. .. ..|+......++..+..+.||||||+++|.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~-------~~-----~~-------~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQ-------SV-----TT-------IPTVGFNVETVTYKNVKFNVWDVGGQDKIR 380 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSS-------CC-----CC-------CCCSSEEEEEEESSSCEEEEEEECCCGGGS
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCC-------CC-----Cc-------CCccceeEEEEEeCCEEEEEEECCCcHHHH
Confidence 456899999999999999999998541 00 00 113333444466677899999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
.....++..+|++|+|+|+++...-+. ...+..+.. .++| +|+|+||+|+.+.... + ++.+.+......
T Consensus 381 ~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~-~----~~~~~~~~~~~~ 454 (497)
T 3lvq_E 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKP-H----EIQEKLGLTRIR 454 (497)
T ss_dssp GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSCCCH-H----HHHHHTTCTTCC
T ss_pred HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcCCCH-H----HHHHHhchhhhh
Confidence 888888999999999999987432221 222222221 3677 7799999999753211 1 122222211112
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
....+++++||++| .|+++++++|.+.+.
T Consensus 455 ~~~~~~~~~SA~~g----------~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 455 DRNWYVQPSCATSG----------DGLYEGLTWLTSNYK 483 (497)
T ss_dssp SSCEEEEECBTTTT----------BTHHHHHHHHHHHCC
T ss_pred cCCeEEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 23467999999999 999999999998775
No 164
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.69 E-value=3.7e-17 Score=165.63 Aligned_cols=154 Identities=21% Similarity=0.236 Sum_probs=101.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
..++|+++|++|+|||||+|+|++.... . .....|+|.+.....+..++..+.||||||+.++..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a------~---------v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~ 287 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRA------I---------VTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD 287 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBS------C---------CSCCTTCCHHHHHHEEEETTEEEEECC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcc------c---------ccCCCCeeEEEEEEEEEECCEEEEEEECCccccchh
Confidence 4578999999999999999999865210 0 011124444443334455778899999999877532
Q ss_pred --------HHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 144 --------NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 144 --------~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
.....+..+|++++|+|++++...+..+.+..+. ..| +++|+||+|+.+.... + .++.+.
T Consensus 288 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~p-iivV~NK~Dl~~~~~~-~--------~~~~~~ 355 (462)
T 3geh_A 288 QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRP-LILVMNKIDLVEKQLI-T--------SLEYPE 355 (462)
T ss_dssp -----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSC-EEEEEECTTSSCGGGS-T--------TCCCCT
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCc-EEEEEECCCCCcchhh-H--------HHHHhc
Confidence 2334567899999999999988777766665554 356 7799999999864321 0 111111
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
...+++++||++| .|+++|++.|.+.+..
T Consensus 356 ---~~~~~i~iSAktg----------~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 356 ---NITQIVHTAAAQK----------QGIDSLETAILEIVQT 384 (462)
T ss_dssp ---TCCCEEEEBTTTT----------BSHHHHHHHHHHHHTT
T ss_pred ---cCCcEEEEECCCC----------CCHHHHHHHHHHHHhc
Confidence 3468999999999 8999999999887654
No 165
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.68 E-value=1.1e-16 Score=155.77 Aligned_cols=161 Identities=14% Similarity=0.074 Sum_probs=107.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADY 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~ 141 (451)
..++|+++|.+|+|||||+++|.+...... ..+.+.+.....+..++ ..+.||||||+++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 216 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCS-----------------CCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcc-----------------cCCcccceeEEEEEECCEEEEEEEEeCCCchhh
Confidence 458999999999999999999985421100 00112122222233334 34569999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHH--HHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHH---------HHHHH
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVCFLNKVDLVEDEELLELV---------EMELR 208 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~--~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~---------~~~~~ 208 (451)
.......+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+.....+.+ .++..
T Consensus 217 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 295 (332)
T 2wkq_A 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 295 (332)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred hHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhcccccchhhhccccccccccHHHHH
Confidence 88777788899999999999874332222 222334333 677 77999999997643322221 12345
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++.+.+++ .+++++||++| .|++++++.|.+.+.
T Consensus 296 ~~~~~~~~----~~~~~~Sa~~~----------~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 296 AMAKEIGA----VKYLECSALTQ----------RGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHTTC----SEEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred HHHHHcCC----cEEEEecCCCC----------cCHHHHHHHHHHHHh
Confidence 55665543 48999999999 899999999887653
No 166
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=6.4e-16 Score=140.74 Aligned_cols=161 Identities=18% Similarity=0.126 Sum_probs=96.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH-
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY- 141 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~- 141 (451)
...++|+++|.+|+|||||+++|.+.. ..+. ... ..-|.+.....+.+......+.+|||+|.+..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~-----~~~~-----~~~---~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~ 101 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVH-----DSMD-----SDC---EVLGEDTYERTLMVDGESATIILLDMWENKGEN 101 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCC-----CTTC-----CC------CCTTEEEEEEEETTEEEEEEEECCTTTTHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC-----CCCC-----CcC---CccceeeEEEEEEECCeeeEEEEeecCCCcchh
Confidence 345899999999999999999998421 0000 000 00122222222222222245689999998773
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
.......++.+|++++|+|.++... ....+.+..+.. .++| +|+|.||+|+.+..... .++...+...++
T Consensus 102 ~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~r~v~---~~e~~~~a~~~~- 176 (211)
T 2g3y_A 102 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRCREVS---VSEGRACAVVFD- 176 (211)
T ss_dssp HHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCGGGCCSC---HHHHHHHHHHHT-
T ss_pred hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHhcCceEe---HHHHHHHHHHcC-
Confidence 2223334567999999999986321 112222233332 2677 78999999996421110 112223333433
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||++| .|++++++.|.+.+
T Consensus 177 ----~~~~e~SAk~g----------~~v~elf~~l~~~i 201 (211)
T 2g3y_A 177 ----CKFIETSAAVQ----------HNVKELFEGIVRQV 201 (211)
T ss_dssp ----CEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 89999999987754
No 167
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.64 E-value=1.5e-15 Score=149.45 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh-------
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH------- 138 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~------- 138 (451)
..|+++|++|+|||||+|+|++... ..+...+.|.+.....+...+..+.++||||+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~----------------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~ 243 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQ----------------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQ 243 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBCSSCCGG
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCc----------------cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHH
Confidence 3599999999999999999985421 11112245555544555666788999999996
Q ss_pred --HHHHHHHHHhcccCCEEEEEEeCCCCC---CccHHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHH
Q 013007 139 --ADYVKNMITGAAQMDGGILVVSAPDGP---MPQTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (451)
Q Consensus 139 --~~~~~~~~~~~~~~d~~ilVvda~~g~---~~~t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (451)
+.| ..+...+..+|++++|+|+++.. ..+.......+.. .+.| +++|.||+|+.+... ....+.+..+
T Consensus 244 lve~f-~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~Dl~~~~~--~~~~~~~~~l 319 (364)
T 2qtf_A 244 IVDAF-FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKP-ILVTLNKIDKINGDL--YKKLDLVEKL 319 (364)
T ss_dssp GHHHH-HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC-EEEEEECGGGCCSCH--HHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC-EEEEEECCCCCCchH--HHHHHHHHHH
Confidence 223 34556788999999999998753 1222222333333 3567 779999999986321 1111223333
Q ss_pred HHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
...+.. ...+++++||+++ .|+++|++.|.+.++
T Consensus 320 ~~~l~~--~~~~~~~~SA~~g----------~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 320 SKELYS--PIFDVIPISALKR----------TNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHCS--CEEEEEECBTTTT----------BSHHHHHHHHHHHHH
T ss_pred HHHhcC--CCCcEEEEECCCC----------cCHHHHHHHHHHHhc
Confidence 344311 2346899999998 899999999987664
No 168
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=7.1e-16 Score=140.89 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=87.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
....++|+++|++|+|||||+++|.+..... .. ... ..++. .......+.+|||||+++|
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~----~~---------~~~--~~~~~-----~~~~~~~~~l~Dt~G~~~~ 68 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TV---------VSQ--EPLSA-----ADYDGSGVTLVDFPGHVKL 68 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCC----BC---------CCS--SCEEE-----TTGGGSSCEEEECCCCGGG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCC----ee---------eec--CceEE-----EEeeCceEEEEECCCcHHH
Confidence 3456799999999999999999998642110 00 000 11111 1114567899999999998
Q ss_pred HHHHHHhccc----CCEEEEEEeCC-CC-CCccHHHHHHHHH-H------cCCCeEEEEEeeccCCCh---HHHHHHHHH
Q 013007 142 VKNMITGAAQ----MDGGILVVSAP-DG-PMPQTKEHILLAR-Q------VGVPSLVCFLNKVDLVED---EELLELVEM 205 (451)
Q Consensus 142 ~~~~~~~~~~----~d~~ilVvda~-~g-~~~~t~~~l~~~~-~------~~ip~iivviNK~D~~~~---~~~~~~~~~ 205 (451)
.......+.. +|++++|+|++ +. ......+.+..+. . .++| +++|+||+|+.+. .+..+.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~l~~ 147 (218)
T 1nrj_B 69 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFTARPPSKIKDALES 147 (218)
T ss_dssp THHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCC-EEEEEEchHhcccCCHHHHHHHHHH
Confidence 7777776665 89999999998 32 2222333332222 1 3677 7899999999863 233334444
Q ss_pred HHHHHHHhcCCCCCCCCeeecccccc
Q 013007 206 ELRELLSFYKFPGDEIPIIRGSATSA 231 (451)
Q Consensus 206 ~~~~~l~~~~~~~~~~pvi~~Sa~~g 231 (451)
++..+....+ .+++++||+++
T Consensus 148 ~~~~~~~~~~-----~~~~~~Sa~~~ 168 (218)
T 1nrj_B 148 EIQKVIERRK-----KSLNEVERKIN 168 (218)
T ss_dssp HHHHHHHHHH-----HHHHC------
T ss_pred HHHHHHHHHh-----ccccccccccc
Confidence 5555554432 47899999887
No 169
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.62 E-value=4.6e-15 Score=146.16 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=102.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH-
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY- 141 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~- 141 (451)
....+|+++|.+|+|||||+++|++.....+ ...+.|.......+...+..+.+|||||+.++
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 228 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIA----------------SYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRP 228 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEE----------------CCTTCSSCEEEEEEEETTEEEEEEECTTTSSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC----------------CCCCeeeceeEEEEEecCceEEEEeCCCccccc
Confidence 3457999999999999999999985321100 11133333333444555778999999997542
Q ss_pred -------HHHHHHhc-ccCCEEEEEEeCCCCC--CccH-HHHHHHHHH-c-CCCeEEEEEeeccCCChHHHHHHHHHHHH
Q 013007 142 -------VKNMITGA-AQMDGGILVVSAPDGP--MPQT-KEHILLARQ-V-GVPSLVCFLNKVDLVEDEELLELVEMELR 208 (451)
Q Consensus 142 -------~~~~~~~~-~~~d~~ilVvda~~g~--~~~t-~~~l~~~~~-~-~ip~iivviNK~D~~~~~~~~~~~~~~~~ 208 (451)
.......+ ..+|.+++|+|++... ..+. .+.+..+.. . +.| +++|+||+|+.+..+. + +..
T Consensus 229 ~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~Dl~~~~~~-~----~~~ 302 (357)
T 2e87_A 229 ISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKIDVADEENI-K----RLE 302 (357)
T ss_dssp STTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTTTCCHHHH-H----HHH
T ss_pred hhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcccCChHHH-H----HHH
Confidence 12222233 3599999999987643 2222 233333332 3 677 7799999999874432 2 233
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++.. ..|++++||++| +|+++|+++|.+.+
T Consensus 303 ~~~~~~-----~~~~~~iSA~~g----------~gi~~l~~~i~~~l 334 (357)
T 2e87_A 303 KFVKEK-----GLNPIKISALKG----------TGIDLVKEEIIKTL 334 (357)
T ss_dssp HHHHHT-----TCCCEECBTTTT----------BTHHHHHHHHHHHH
T ss_pred HHHHhc-----CCCeEEEeCCCC----------cCHHHHHHHHHHHH
Confidence 344433 368999999999 89999999987765
No 170
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=5.2e-15 Score=134.20 Aligned_cols=161 Identities=16% Similarity=0.194 Sum_probs=103.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH----
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA---- 139 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~---- 139 (451)
+..+|+++|++|+|||||+++|++.... .......|.+.......+. + .+.++||||+.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~--------------~~~~~~~G~~~~~~~~~~~--~-~~~l~Dt~G~~~~~~ 87 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSL--------------ARTSKTPGRTQLINLFEVA--D-GKRLVDLPGYGYAEV 87 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEEEEEEE--T-TEEEEECCCCC----
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc--------------ccccCCCccceeeEEEEec--C-CEEEEECcCCccccc
Confidence 3469999999999999999999754210 0001122444433333232 2 68899999973
Q ss_pred ------HHHHH---HHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHH
Q 013007 140 ------DYVKN---MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (451)
Q Consensus 140 ------~~~~~---~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (451)
.|... .......+|.+++++|+..+......+....+...++| ++++.||+|+.+..+.. .....+..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~nK~D~~s~~~~~-~~~~~~~~~ 165 (210)
T 1pui_A 88 PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIA-VLVLLTKADKLASGARK-AQLNMVREA 165 (210)
T ss_dssp --CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCHHHHH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEecccCCCchhHH-HHHHHHHHH
Confidence 23222 22233568999999999987665555566667778899 56789999998743321 112345555
Q ss_pred HHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+...+. ..+++|+||+++ .++.++++.|.+.++
T Consensus 166 ~~~~~~---~~~~~~~Sal~~----------~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 166 VLAFNG---DVQVETFSSLKK----------QGVDKLRQKLDTWFS 198 (210)
T ss_dssp HGGGCS---CEEEEECBTTTT----------BSHHHHHHHHHHHHC
T ss_pred HHhcCC---CCceEEEeecCC----------CCHHHHHHHHHHHHh
Confidence 555432 367899999998 889999999887654
No 171
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.60 E-value=3.3e-15 Score=159.03 Aligned_cols=127 Identities=18% Similarity=0.222 Sum_probs=77.2
Q ss_pred eeEEEEecCChHHH---HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHH-HHHHcCCCeEEEEEeeccCCChH------
Q 013007 128 RHYAHVDCPGHADY---VKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL-LARQVGVPSLVCFLNKVDLVEDE------ 197 (451)
Q Consensus 128 ~~i~iiDtPG~~~~---~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~-~~~~~~ip~iivviNK~D~~~~~------ 197 (451)
..++||||||+.+. ...+..++..+|++|+|+|++++......+.+. .+...+.| +++|+||+|+..+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGGCSSTTC
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccccccccChhh
Confidence 46999999997763 455556778899999999999887776666654 44456778 77999999987532
Q ss_pred -HHHHHHHHHH----HHHHHhc-C---CCCCCCCeeeccccccccC----CCcccchhhHHHHHHHHHhhC
Q 013007 198 -ELLELVEMEL----RELLSFY-K---FPGDEIPIIRGSATSALQG----KNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 198 -~~~~~~~~~~----~~~l~~~-~---~~~~~~pvi~~Sa~~g~~~----~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+.++...+.+ ...+..+ + +.....+++++||+.++.. ........|+++|.+.|.+.+
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 1122222222 2223222 1 1112357999999922111 000001166777777766544
No 172
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.60 E-value=2.8e-15 Score=143.66 Aligned_cols=160 Identities=13% Similarity=0.141 Sum_probs=97.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH---
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK--- 143 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~--- 143 (451)
||+++|..|+|||||++++.+.... ......+.|+......+. ...++.||||||+++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~---------------~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQP---------------LDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSY 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCS---------------GGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCC---------------CccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhh
Confidence 5899999999999999887632100 000112333333322232 346799999999999953
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHHHHH----HHHH--cCCCeEEEEEeeccCCChHHHH---HHHHHHHHHHHHhc
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHIL----LARQ--VGVPSLVCFLNKVDLVEDEELL---ELVEMELRELLSFY 214 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~----~~~~--~~ip~iivviNK~D~~~~~~~~---~~~~~~~~~~l~~~ 214 (451)
....+++.++++|+|+|+++. .......|. .+.. -++| ++++.||+|+.+++++. ..+..+..+-+.+.
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~ 142 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL 142 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCc-EEEEEECcccCchhhhhhHHHHhhHHHHHHHHhh
Confidence 345678899999999999987 444444432 2221 3567 77899999998754432 22322222222222
Q ss_pred CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 215 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++..++++.+||++ .++.+.+..+.+.+
T Consensus 143 ~~~~~~i~f~eTSAkd-----------~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 143 GLDGVQVSFYLTSIFD-----------HSIYEAFSRIVQKL 172 (331)
T ss_dssp SCSCCCEEEECCCSSS-----------SHHHHHHHHHHTTS
T ss_pred cccccCceEEEeccCC-----------CcHHHHHHHHHHHH
Confidence 2222357899999975 35666666555544
No 173
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.59 E-value=4.1e-16 Score=161.92 Aligned_cols=159 Identities=14% Similarity=0.164 Sum_probs=100.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEee------EEEe--eeCCeeEEEEe
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA------HVEY--ETAKRHYAHVD 134 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~------~~~~--~~~~~~i~iiD 134 (451)
...++|+++|.+|+|||||+++|++......... ..|.++... .+.+ ......+.+||
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~--------------t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~D 104 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQ--------------THGLNVVTKQAPNIKGLENDDELKECLFHFWD 104 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEEC
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--------------ccceEEEEeccccccceeecCCCceEEEEEEE
Confidence 4568999999999999999999986532111100 011222111 0001 12256799999
Q ss_pred cCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcC--CCeEEEEEeeccCCChHHHHHHHHHHHHHHHH
Q 013007 135 CPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG--VPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (451)
Q Consensus 135 tPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~--ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~ 212 (451)
|||++.|.......++.+|++++|+|+++. ......+..+...+ .| +|+|+||+|+.+..+.. .+++++++.
T Consensus 105 t~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~~v~---~~~~~~~~~ 178 (535)
T 3dpu_A 105 FGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSP-VIVVMNKIDENPSYNIE---QKKINERFP 178 (535)
T ss_dssp CCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCC-EEEEECCTTTCTTCCCC---HHHHHHHCG
T ss_pred CCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCC-EEEEEECCCcccccccC---HHHHHHHHH
Confidence 999988877666677889999999999864 44555556666654 78 77999999997632211 123444555
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.++ .+++++||++| .|+++|++.|.+.+.
T Consensus 179 ~~~-----~~~~~vSA~~g----------~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 179 AIE-----NRFHRISCKNG----------DGVESIAKSLKSAVL 207 (535)
T ss_dssp GGT-----TCEEECCC---------------CTTHHHHHHHHHT
T ss_pred hcC-----CceEEEecCcc----------cCHHHHHHHHHHHHh
Confidence 443 57999999998 777888887776554
No 174
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.59 E-value=2.4e-15 Score=145.52 Aligned_cols=119 Identities=15% Similarity=0.084 Sum_probs=75.1
Q ss_pred CCeeEEEEecCChHH-------------HHHHHHHhcccCCEEEEEEeC-CCCCCccH-HHHHHHHHHcCCCeEEEEEee
Q 013007 126 AKRHYAHVDCPGHAD-------------YVKNMITGAAQMDGGILVVSA-PDGPMPQT-KEHILLARQVGVPSLVCFLNK 190 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~-------------~~~~~~~~~~~~d~~ilVvda-~~g~~~~t-~~~l~~~~~~~ip~iivviNK 190 (451)
....++||||||+.+ +...+..++..+|++++|+|+ +.+...+. ...+..+...+.| +++|+||
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~-~i~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKR-TIGVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSS-EEEEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCc-EEEEEcC
Confidence 346899999999753 566677788899999999997 55555444 3566666667888 7789999
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 191 VDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 191 ~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
+|+.+.... ..+.++.. +.....+++++|+.++.+.+ ...|+.++++.+.++++.
T Consensus 208 ~Dl~~~~~~-------~~~~~~~~-~~~~~~~~~~v~~~sa~~~~----~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTD-------AMEVLTGR-VIPLTLGFIGVINRSQEDII----AKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCC-------CHHHHTTS-SSCCTTCEEECCCCCHHHHS----SSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchH-------HHHHHhCC-CccCCCCeEEEecCChhhhc----cCCCHHHHHHHHHHHHhC
Confidence 999864321 11122211 10111345666665553310 015778888888777653
No 175
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.59 E-value=3.3e-15 Score=143.38 Aligned_cols=109 Identities=14% Similarity=0.133 Sum_probs=70.9
Q ss_pred CeeEEEEecCChH-------------HHHHHHHHhcccCCEEE-EEEeCCCCCCccHH-HHHHHHHHcCCCeEEEEEeec
Q 013007 127 KRHYAHVDCPGHA-------------DYVKNMITGAAQMDGGI-LVVSAPDGPMPQTK-EHILLARQVGVPSLVCFLNKV 191 (451)
Q Consensus 127 ~~~i~iiDtPG~~-------------~~~~~~~~~~~~~d~~i-lVvda~~g~~~~t~-~~l~~~~~~~ip~iivviNK~ 191 (451)
...++||||||+. .+...+..++..+|.++ +|+|++.+...+.. ..+..+...+.| +++|+||+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~-~i~V~NK~ 202 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQR-TIGVITKL 202 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSS-EEEEEECG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCe-EEEEEEcc
Confidence 4689999999963 35555666777888776 69999988777664 455556556788 77999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHh--cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 192 DLVEDEELLELVEMELRELLSF--YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
|+.+.... .. +.++. ..+.....+++++||+++ .|+++|++.|.+
T Consensus 203 Dl~~~~~~---~~----~~~~~~~~~~~~~~~~v~~~SA~~~----------~gi~~l~~~l~~ 249 (299)
T 2aka_B 203 DLMDEGTD---AR----DVLENKLLPLRRGYIGVVNRSQKDI----------DGKKDITAALAA 249 (299)
T ss_dssp GGSCTTCC---CH----HHHTTCSSCCTTCEEECCCCCCBCT----------TSCBCHHHHHHH
T ss_pred ccCCCCch---HH----HHHhCCcCcCCCCcEEEECCChhhc----------cccccHHHHHHH
Confidence 99863221 01 11221 111111257999999998 555555555543
No 176
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.58 E-value=3.8e-15 Score=133.55 Aligned_cols=160 Identities=18% Similarity=0.130 Sum_probs=92.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH-H
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY-V 142 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~-~ 142 (451)
..++|+++|.+|+|||||+++|.+... .+. ... ..-|.+.......+......+.+|||+|.+.. .
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~-----~~~-----~~~---~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~ 71 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHD-----SMD-----SDX---EVLGEDTYERTLMVDGESATIILLDMWENKGENE 71 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSC-----CC------------GGGCTTEEEEEEEETTEEEEEEEECCCCC----C
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcC-----CcC-----ccc---cccceeEEEEEEEECCeEEEEEEEEeccCcchhh
Confidence 458999999999999999999985310 000 000 00122222222222222235678999997652 1
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......++.+|++++|+|.++...-+ ..+.+..+.. .++| +++|.||+|+.+..... .++...+....
T Consensus 72 ~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~r~v~---~~~~~~~a~~~--- 144 (192)
T 2cjw_A 72 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRXREVS---VSEGRAXAVVF--- 144 (192)
T ss_dssp TTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHT---
T ss_pred hHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe-EEEEEechhhhcccccc---HHHHHHHHHHh---
Confidence 11222345699999999998632211 1222222322 2677 78999999986421110 11222333333
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
..+++++||++| .|++++++.|.+.+
T Consensus 145 --~~~~~e~SA~~g----------~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 145 --DXKFIETSAAVQ----------HNVKELFEGIVRQV 170 (192)
T ss_dssp --TCEEEECBTTTT----------BSHHHHHHHHHHHH
T ss_pred --CCceEEeccccC----------CCHHHHHHHHHHHH
Confidence 257999999998 88999998887654
No 177
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.58 E-value=1.1e-14 Score=143.40 Aligned_cols=176 Identities=20% Similarity=0.154 Sum_probs=107.3
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch------hh--------hhcCceEEeeE-------
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP------EE--------KKRGITIATAH------- 120 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~------~e--------~~~g~t~~~~~------- 120 (451)
.....+|+++|++|+|||||+++|.......|.............. .+ ...+..+....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 3456799999999999999999999887666655443321110000 00 00111111000
Q ss_pred ---------EEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeec
Q 013007 121 ---------VEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKV 191 (451)
Q Consensus 121 ---------~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~ 191 (451)
..+...+..+.||||||..+-.. ..+..+|++++|+|+..+...+... .....+| +++|+||+
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~---~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p-~ivVlNK~ 227 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQSEV---AVANMVDTFVLLTLARTGDQLQGIK----KGVLELA-DIVVVNKA 227 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSHHH---HHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGC-SEEEEECC
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcHHH---HHHHhCCEEEEEECCCCCccHHHHH----HhHhhcC-CEEEEECC
Confidence 01133567899999999544222 2247799999999987654433221 1112457 56899999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCC--CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 192 DLVEDEELLELVEMELRELLSFYKFP--GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
|+.+..+ .+...+++.+.+..+... .+..|++++||++| .|+++|+++|.++++
T Consensus 228 Dl~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g----------~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 228 DGEHHKE-ARLAARELSAAIRLIYPREALWRPPVLTMSAVEG----------RGLAELWDTVERHRQ 283 (355)
T ss_dssp CGGGHHH-HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGT----------BSHHHHHHHHHHHHH
T ss_pred CCcChhH-HHHHHHHHHHHHhhccccccCCCCceEEEEcCCC----------CCHHHHHHHHHHHHH
Confidence 9975333 333344555555444211 12478999999999 899999999887654
No 178
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.58 E-value=4.9e-15 Score=139.61 Aligned_cols=117 Identities=12% Similarity=0.050 Sum_probs=78.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH-
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY- 141 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~- 141 (451)
...++|+++|++|+|||||+|+|++.. . .......+.|.......+...+..++||||||+.+|
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~------~---------~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQ------V---------VRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSC------C---------SCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC------C---------cccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 457899999999999999999998531 0 011122345555555666778889999999998764
Q ss_pred ------HHHHHHhc--ccCCEEEEEEeCCCC-CCccHHHHHHHHHHc-C----CCeEEEEEeeccCCC
Q 013007 142 ------VKNMITGA--AQMDGGILVVSAPDG-PMPQTKEHILLARQV-G----VPSLVCFLNKVDLVE 195 (451)
Q Consensus 142 ------~~~~~~~~--~~~d~~ilVvda~~g-~~~~t~~~l~~~~~~-~----ip~iivviNK~D~~~ 195 (451)
.......+ ..+|++++|+|.+.. ......+.+..+... + .| +++|+||+|+.+
T Consensus 99 ~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nK~Dl~~ 165 (262)
T 3def_A 99 YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCK-TLLVLTHAQFSP 165 (262)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGG-EEEEEECTTCCC
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcC-EEEEEeCcccCC
Confidence 33333333 268999999888653 333344555555442 2 25 789999999963
No 179
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.57 E-value=4.4e-15 Score=133.77 Aligned_cols=157 Identities=18% Similarity=0.129 Sum_probs=99.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADY 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~ 141 (451)
..++|+++|+.|+|||||+++|++..... +....++.+.....+...+ ..+.+|||||+++|
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~----------------~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~ 67 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL----------------ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 67 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC----------------CCCCccceeEEEEEEEECCEEEEEEEEECCCchhh
Confidence 35799999999999999999998642110 0011111222222233334 45788999999988
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
.......+..+|++++|+|..+.... .....+..+.. .+.| +++++||+|+.+..... .++...++...+
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~---~~~a~~l~~~~~-- 141 (199)
T 2f9l_A 68 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVP---TDEARAFAEKNN-- 141 (199)
T ss_dssp TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHTT--
T ss_pred hhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCcC---HHHHHHHHHHcC--
Confidence 65555566789999999998864322 22223333332 2455 78999999986421110 123445555543
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++.+||+++ .++.++++.|.+.+
T Consensus 142 ---~~~~d~Sal~~----------~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 142 ---LSFIETSALDS----------TNVEEAFKNILTEI 166 (199)
T ss_dssp ---CEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57899999988 78888888876654
No 180
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.57 E-value=1.1e-14 Score=142.58 Aligned_cols=174 Identities=17% Similarity=0.132 Sum_probs=101.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCC-----------chhhh----hcCceEEee--------
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDK-----------APEEK----KRGITIATA-------- 119 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~-----------~~~e~----~~g~t~~~~-------- 119 (451)
.....|+++|++|+|||||+++|.+.....|............ ...+. .++.-....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 3457899999999999999999998766555433322211100 00000 011100000
Q ss_pred -------EEEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeecc
Q 013007 120 -------HVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (451)
Q Consensus 120 -------~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D 192 (451)
...+...+..++||||||+.++...+ ...+|++++|+|+..+...+.... ...++| .++|+||+|
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p-~ivv~NK~D 205 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDDLQGIKK----GLMEVA-DLIVINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC------CCCCH----HHHHHC-SEEEECCCC
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHHHHHHHH----hhhccc-CEEEEECCC
Confidence 00112456789999999987765443 478999999999986543222111 112457 458999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCC--CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 193 LVEDEELLELVEMELRELLSFYKF--PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+.+..+ .....+++.+.+..++. ..+..+++++||++| .|+++|++.|.+.+
T Consensus 206 l~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g----------~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 206 GDNHTN-VAIARHMYESALHILRRKYDEWQPRVLTCSALEK----------RGIDEIWHAIIDFK 259 (341)
T ss_dssp TTCHHH-HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGT----------BSHHHHHHHHHHHH
T ss_pred CCChHH-HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 986433 22233345554544331 111357899999998 88999888887754
No 181
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=7.5e-15 Score=144.58 Aligned_cols=174 Identities=18% Similarity=0.203 Sum_probs=86.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
...++|+++|++|+|||||+++|.+...-... ..+....+...++++......+...+ ..+++|||||+.+
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~-------~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPER-------VIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC----------------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCC-------cccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 44689999999999999999998743110000 00111111122333333222233333 3689999999943
Q ss_pred HHH-----------------HHHHhcc----------cCCEEEEEEeC-CCCCCccHHHHHHHHHHcCCCeEEEEEeecc
Q 013007 141 YVK-----------------NMITGAA----------QMDGGILVVSA-PDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (451)
Q Consensus 141 ~~~-----------------~~~~~~~----------~~d~~ilVvda-~~g~~~~t~~~l~~~~~~~ip~iivviNK~D 192 (451)
+.. ....... .+|+++++|+. .++......+.+..+ ..++| +|+|+||+|
T Consensus 108 ~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~p-iIlV~NK~D 185 (361)
T 2qag_A 108 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVN-IVPVIAKAD 185 (361)
T ss_dssp --------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SC-EEEEEECCS
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCC-EEEEEECCC
Confidence 321 1111111 13578888886 445555444444444 35678 789999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCC
Q 013007 193 LVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (451)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~ 258 (451)
+.+..+. ..+++++.++++.. .++++++||+++.+. +.+.++++.|.+.+|.+
T Consensus 186 l~~~~ev-~~~k~~i~~~~~~~-----~i~~~~~Sa~~~~~~-------e~~~~l~~~i~~~ip~~ 238 (361)
T 2qag_A 186 TLTLKER-ERLKKRILDEIEEH-----NIKIYHLPDAESDED-------EDFKEQTRLLKASIPFS 238 (361)
T ss_dssp SSCHHHH-HHHHHHHHHHTTCC------CCSCCCC----------------CHHHHHHHHHTCSCE
T ss_pred CCCHHHH-HHHHHHHHHHHHHC-----CCCEEeCCCcCCCcc-------hhHHHHHHHHHhcCCCC
Confidence 9875443 33334555555443 468999999987331 44667778887777643
No 182
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.56 E-value=1.7e-14 Score=136.56 Aligned_cols=118 Identities=12% Similarity=0.014 Sum_probs=78.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH-
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY- 141 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~- 141 (451)
...++|+++|++|+|||||+|+|++... . ......+.|.......+...+..++||||||+.++
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERV------V---------SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCC------S---------CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc------c---------cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 3578999999999999999999985311 0 01111244444444556667888999999998654
Q ss_pred ------HHHHHHh--cccCCEEEEEEeCCC-CCCccHHHHHHHHHHc-C----CCeEEEEEeeccCCCh
Q 013007 142 ------VKNMITG--AAQMDGGILVVSAPD-GPMPQTKEHILLARQV-G----VPSLVCFLNKVDLVED 196 (451)
Q Consensus 142 ------~~~~~~~--~~~~d~~ilVvda~~-g~~~~t~~~l~~~~~~-~----ip~iivviNK~D~~~~ 196 (451)
...+..+ ...+|++++|+|.+. .......+.+..+... + .| +++|+||+|+.++
T Consensus 102 ~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~-iivV~nK~Dl~~~ 169 (270)
T 1h65_A 102 YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK-AIVALTHAQFSPP 169 (270)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGG-EEEEEECCSCCCG
T ss_pred cchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccC-EEEEEECcccCCc
Confidence 2333222 236999999998865 3333444555555432 4 35 7899999999763
No 183
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=1.2e-14 Score=144.69 Aligned_cols=83 Identities=22% Similarity=0.139 Sum_probs=45.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEE--Eee-------------------
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHV--EYE------------------- 124 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~--~~~------------------- 124 (451)
++|+++|.+|+|||||+|+|++.....+. ..+.|++.... .+.
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~----------------~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~ 64 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIAN----------------YPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEY 64 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC----------------CCCcccCCceEEEeeccCCchHHhhhhcccccccc
Confidence 48999999999999999999965311111 11122221111 000
Q ss_pred eC---CeeEEEEecCChHHHH-------HHHHHhcccCCEEEEEEeCCCC
Q 013007 125 TA---KRHYAHVDCPGHADYV-------KNMITGAAQMDGGILVVSAPDG 164 (451)
Q Consensus 125 ~~---~~~i~iiDtPG~~~~~-------~~~~~~~~~~d~~ilVvda~~g 164 (451)
.. ...+.||||||+.+.. ......++.+|++++|+|++++
T Consensus 65 ~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 65 RNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred cCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 01 2468999999986531 2222446789999999999875
No 184
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=134.80 Aligned_cols=85 Identities=15% Similarity=0.168 Sum_probs=56.9
Q ss_pred cCCEEEEEEeCCCC--CC-ccHHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 013007 151 QMDGGILVVSAPDG--PM-PQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPI 223 (451)
Q Consensus 151 ~~d~~ilVvda~~g--~~-~~t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv 223 (451)
.+|++++|+|+++. .. ......+..+. ..++| +++|.||+|+.+.... ++..++.+.. ...++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v-----~~~~~~~~~~----~~~~~ 231 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGVERYI-----RDAHTFALSK----KNLQV 231 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBCHHHH-----HHHHHHHHTS----SSCCE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCC-EEEEEEcccccccHHH-----HHHHHHHHhc----CCCeE
Confidence 69999999999875 22 22223333332 24677 7799999999754332 2444555442 13689
Q ss_pred eeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 224 IRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 224 i~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+++||+++ .|++++++.|.+.+
T Consensus 232 ~e~SAk~g----------~gv~elf~~l~~~l 253 (255)
T 3c5h_A 232 VETSARSN----------VNVDLAFSTLVQLI 253 (255)
T ss_dssp EECBTTTT----------BSHHHHHHHHHHHH
T ss_pred EEEECCCC----------CCHHHHHHHHHHHh
Confidence 99999998 89999999987643
No 185
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.50 E-value=2.4e-14 Score=128.19 Aligned_cols=157 Identities=17% Similarity=0.111 Sum_probs=99.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCe--eEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKR--HYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~--~i~iiDtPG~~~ 140 (451)
...++|+++|+.|+|||||+++|.+...... ....++.+.....+...+. .+.+|||||+++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~----------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE----------------SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCS----------------CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC----------------CCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 3468999999999999999999986421110 0112222222223333443 456799999988
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
|.......+..+|++++|+|..+... ......+..+.. .+.| +++++||+|+.+..... .+....+....+
T Consensus 91 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~---~~~a~~l~~~~~- 165 (191)
T 1oix_A 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVP---TDEARAFAEKNG- 165 (191)
T ss_dssp SSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT-
T ss_pred hhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC---HHHHHHHHHHcC-
Confidence 76655566677899999999876322 122222332332 2445 78999999986421110 123445555543
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
++++.+||+++ .++.++++.|.+.
T Consensus 166 ----~~~ld~Sald~----------~~v~~l~~~l~~~ 189 (191)
T 1oix_A 166 ----LSFIETSALDS----------TNVEAAFQTILTE 189 (191)
T ss_dssp ----CEEEECCTTTC----------TTHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 57889999998 8899999988754
No 186
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.2e-14 Score=127.07 Aligned_cols=112 Identities=19% Similarity=0.211 Sum_probs=68.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|+++|+.|+|||||+++|.+..... . ......+++. ......+.+|||||+.+|.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~----~---------~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~ 105 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP----T---------VVSQEPLSAA-------DYDGSGVTLVDFPGHVKLR 105 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CCCCTTCSEEEETTCCBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc----c---------cccCCCceee-------eecCCeEEEEECCCCchHH
Confidence 456799999999999999999998542100 0 0000111111 1145678999999988764
Q ss_pred HHHHHhcc----cCCEEEEEEeCC-CCC-CccHHHHHHHH-HH------cCCCeEEEEEeeccCCC
Q 013007 143 KNMITGAA----QMDGGILVVSAP-DGP-MPQTKEHILLA-RQ------VGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 143 ~~~~~~~~----~~d~~ilVvda~-~g~-~~~t~~~l~~~-~~------~~ip~iivviNK~D~~~ 195 (451)
......+. .+|++++|+|++ +.. .......+..+ .. .++| +++|+||+|+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 170 (193)
T 2ged_A 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFT 170 (193)
T ss_dssp CCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTT
T ss_pred HHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEchHhcC
Confidence 44444333 489999999998 311 11111222222 11 3677 779999999986
No 187
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=134.35 Aligned_cols=171 Identities=19% Similarity=0.170 Sum_probs=93.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhh----------------hhcCceEEe-e---E---
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEE----------------KKRGITIAT-A---H--- 120 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e----------------~~~g~t~~~-~---~--- 120 (451)
....|+++|.+|+|||||+|+|++.....+........ |..... .....-+.. . .
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~--dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg 150 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV--DPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGG 150 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC--CC----------------CCSTTCTTEEEECC--------
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee--cCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCcccccc
Confidence 36799999999999999999999876554433222211 110000 000000000 0 0
Q ss_pred ---------EEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeec
Q 013007 121 ---------VEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKV 191 (451)
Q Consensus 121 ---------~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~ 191 (451)
..++..+..+.|+||||..+-. ......+|++++|+|+..+...+. +.. ..+..|. ++|+||+
T Consensus 151 ~tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~---i~~-~il~~~~-ivVlNK~ 222 (349)
T 2www_A 151 VTRTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQG---IKR-GIIEMAD-LVAVTKS 222 (349)
T ss_dssp -CTTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCS-EEEECCC
T ss_pred chHHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHH---hHH-HHHhcCC-EEEEeee
Confidence 0112356789999999964221 222457999999999987643221 111 2245674 5789999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCC--CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 192 DLVEDEELLELVEMELRELLSFYKF--PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
|+.+.... +....++...++.... .....|++++||+++ .|+++|+++|.+.+
T Consensus 223 Dl~~~~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g----------~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 223 DGDLIVPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSG----------EGISEMWDKMKDFQ 277 (349)
T ss_dssp SGGGHHHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred cCCCchhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 99753221 1112233333332211 012467999999998 88999988887754
No 188
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.44 E-value=7.2e-14 Score=127.79 Aligned_cols=168 Identities=16% Similarity=0.153 Sum_probs=97.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCc--hhh-hhcCceEEe-eE---EEe----------ee
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA--PEE-KKRGITIAT-AH---VEY----------ET 125 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~--~~e-~~~g~t~~~-~~---~~~----------~~ 125 (451)
....+|+++|++|+|||||+++|++......+ ........... ... ...|.+... .. ..+ ..
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~-~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVK-IGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSC-EEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCe-EEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 34579999999999999999999977533211 11111111000 000 111332111 00 001 23
Q ss_pred CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChH-HHHHHHH
Q 013007 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE-ELLELVE 204 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~-~~~~~~~ 204 (451)
.+..+.+|||||+.+--. ......+.+++|+|+..+... .+......+.| +++|+||+|+.+.. ...+
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~--- 175 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV----VEKHPEIFRVA-DLIVINKVALAEAVGADVE--- 175 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTC-SEEEEECGGGHHHHTCCHH---
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh----hhhhhhhhhcC-CEEEEecccCCcchhhHHH---
Confidence 456799999999411000 001246889999999876432 22223345678 55899999986321 1122
Q ss_pred HHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 205 MELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 205 ~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++.+.++.++ ...+++++||++| .|+.+++++|.+.+.
T Consensus 176 -~~~~~~~~~~---~~~~i~~~Sa~~g----------~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 176 -KMKADAKLIN---PRAKIIEMDLKTG----------KGFEEWIDFLRGILN 213 (221)
T ss_dssp -HHHHHHHHHC---TTSEEEECBTTTT----------BTHHHHHHHHHHHHC
T ss_pred -HHHHHHHHhC---CCCeEEEeecCCC----------CCHHHHHHHHHHHHH
Confidence 2333344332 2468999999998 899999999987654
No 189
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.44 E-value=3.2e-13 Score=126.88 Aligned_cols=175 Identities=20% Similarity=0.195 Sum_probs=102.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccC--------------Cchhhh--hcCceEEeeEEE------
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEID--------------KAPEEK--KRGITIATAHVE------ 122 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d--------------~~~~e~--~~g~t~~~~~~~------ 122 (451)
...+++.|..|+|||||+++|..... .|+.......... ....+. .++.........
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 46889999999999999999997776 6655443321110 000000 000000000000
Q ss_pred ---------e-e-eCCeeEEEEecCChHHHHH------HHHHhcccCCEEEEEEeCCCCCCccHHHH-----HHHHHHcC
Q 013007 123 ---------Y-E-TAKRHYAHVDCPGHADYVK------NMITGAAQMDGGILVVSAPDGPMPQTKEH-----ILLARQVG 180 (451)
Q Consensus 123 ---------~-~-~~~~~i~iiDtPG~~~~~~------~~~~~~~~~d~~ilVvda~~g~~~~t~~~-----l~~~~~~~ 180 (451)
+ . ..+..+.||||||..++.. .+...+.. +++++++|+........... +......+
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLG 171 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccC
Confidence 0 0 0134799999999887632 23345566 89999999876554433221 12233457
Q ss_pred CCeEEEEEeeccCCChHHHHHHHHHHH---HH---------------------HHHhcCCCCCCCCeeeccccccccCCC
Q 013007 181 VPSLVCFLNKVDLVEDEELLELVEMEL---RE---------------------LLSFYKFPGDEIPIIRGSATSALQGKN 236 (451)
Q Consensus 181 ip~iivviNK~D~~~~~~~~~~~~~~~---~~---------------------~l~~~~~~~~~~pvi~~Sa~~g~~~~~ 236 (451)
+| +++|+||+|+.+..+ .+.+.+.+ .. +++.++. ..+++++||+++
T Consensus 172 ~p-~~iv~NK~D~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~SA~~~----- 241 (262)
T 1yrb_A 172 AT-TIPALNKVDLLSEEE-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP---PVRVLYLSAKTR----- 241 (262)
T ss_dssp SC-EEEEECCGGGCCHHH-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC---CCCCEECCTTTC-----
T ss_pred CC-eEEEEeccccccccc-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC---cccceEEEecCc-----
Confidence 88 668999999986432 12122111 11 1233322 257999999998
Q ss_pred cccchhhHHHHHHHHHhhCC
Q 013007 237 EEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 237 ~~~~~~~i~~Ll~~l~~~lp 256 (451)
.|+++|+++|.+.++
T Consensus 242 -----~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 242 -----EGFEDLETLAYEHYC 256 (262)
T ss_dssp -----TTHHHHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHhc
Confidence 899999999987654
No 190
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.43 E-value=4.3e-13 Score=138.88 Aligned_cols=71 Identities=25% Similarity=0.229 Sum_probs=58.5
Q ss_pred eeEEEEecCChHH-----------HHHHHHHhcccCCEEEEEEeCCC-CCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 128 RHYAHVDCPGHAD-----------YVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 128 ~~i~iiDtPG~~~-----------~~~~~~~~~~~~d~~ilVvda~~-g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
..++||||||+.+ |...+..++..+|++++|+|+++ +...+..+++..+...+.| +++|+||+|+.+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-vilVlNK~Dl~~ 232 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-IRVVLNKADMVE 232 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-EEEEEECGGGSC
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-EEEEEECCCccC
Confidence 3689999999875 66777778889999999999988 5777778888777777778 779999999997
Q ss_pred hHHH
Q 013007 196 DEEL 199 (451)
Q Consensus 196 ~~~~ 199 (451)
.++.
T Consensus 233 ~~el 236 (550)
T 2qpt_A 233 TQQL 236 (550)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.42 E-value=1.7e-13 Score=134.63 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=88.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH-hcCccc----ee-e---------eec--------cCCc--hhh------hh--
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLA-EEGKAK----AI-A---------FDE--------IDKA--PEE------KK-- 111 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~-~~g~~~----~~-~---------~~~--------~d~~--~~e------~~-- 111 (451)
..+|+++|.+|+|||||+|+|++... ..+.+. .. . ... .+.. ..+ +.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 46999999999999999999986432 111100 00 0 000 0000 000 11
Q ss_pred --cCceEEeeEEEeee-CCeeEEEEecCChH-------------HHHHHHHHhcccC-CEEEEEEeCCCCCCccHHH-HH
Q 013007 112 --RGITIATAHVEYET-AKRHYAHVDCPGHA-------------DYVKNMITGAAQM-DGGILVVSAPDGPMPQTKE-HI 173 (451)
Q Consensus 112 --~g~t~~~~~~~~~~-~~~~i~iiDtPG~~-------------~~~~~~~~~~~~~-d~~ilVvda~~g~~~~t~~-~l 173 (451)
.|+......+.+.. ....++||||||.. .+...+..++..+ +++++|+|++.++..+... .+
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 23332222222222 24689999999952 3444444555554 5666678887766666543 55
Q ss_pred HHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh--cCCCCCCCCeeecccccc
Q 013007 174 LLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF--YKFPGDEIPIIRGSATSA 231 (451)
Q Consensus 174 ~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~pvi~~Sa~~g 231 (451)
..+...+.| +++|+||+|+.+..... .++++. +.+.....+++++||+++
T Consensus 191 ~~~~~~~~~-~i~V~NK~Dl~~~~~~~-------~~~~~~~~~~l~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 191 KEVDPQGQR-TIGVITKLDLMDEGTDA-------RDVLENKLLPLRRGYIGVVNRSQKDI 242 (353)
T ss_dssp HHHCTTCTT-EEEEEECGGGSCTTCCC-------HHHHTTCSSCCTTCEEECCCCCHHHH
T ss_pred HHhCcCCCc-eEEEeccccccCcchhH-------HHHHhCCcccccCCceEEEeCCcccc
Confidence 555556788 77899999998632210 111211 111111257899999988
No 192
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.38 E-value=1.4e-13 Score=145.62 Aligned_cols=161 Identities=12% Similarity=0.096 Sum_probs=95.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHH-hcCcccee--------------eeeccC--------C--chh------hh--
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAI--------------AFDEID--------K--APE------EK-- 110 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~-~~g~~~~~--------------~~~~~d--------~--~~~------e~-- 110 (451)
...+|+++|..++|||||+|+|++... ..|.+... +..... . ... ..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 456999999999999999999997532 11211000 000000 0 000 00
Q ss_pred --hcCceEEeeEEEeee-CCeeEEEEecCChH-------------HHHHHHHHhc-ccCCEEEEEEeCCCCCCccHH-HH
Q 013007 111 --KRGITIATAHVEYET-AKRHYAHVDCPGHA-------------DYVKNMITGA-AQMDGGILVVSAPDGPMPQTK-EH 172 (451)
Q Consensus 111 --~~g~t~~~~~~~~~~-~~~~i~iiDtPG~~-------------~~~~~~~~~~-~~~d~~ilVvda~~g~~~~t~-~~ 172 (451)
..+++.+.....+.. ....++|+||||.. .+...+..++ ..+|++++|+|++.++..+.. ..
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 122332222333322 34579999999942 2333344444 368999999999998887776 67
Q ss_pred HHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh--cCCCCCCCCeeeccccccc
Q 013007 173 ILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF--YKFPGDEIPIIRGSATSAL 232 (451)
Q Consensus 173 l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~pvi~~Sa~~g~ 232 (451)
+..+...+.| +|+|+||+|+.+...... .+++. +.+.....+++++||++|.
T Consensus 210 l~~L~~~g~p-vIlVlNKiDlv~~~~~~~-------~il~~~~~~l~lg~~~VV~iSA~~G~ 263 (772)
T 3zvr_A 210 AKEVDPQGQR-TIGVITKLDLMDEGTDAR-------DVLENKLLPLRRGYIGVVNRSQKDID 263 (772)
T ss_dssp HHHHCTTCSS-EEEEEECTTSSCTTCCSH-------HHHTTCSSCCSSCEEECCCCCCEESS
T ss_pred HHHHHhcCCC-EEEEEeCcccCCcchhhH-------HHHHHHhhhhhccCCceEEecccccc
Confidence 7777777888 678999999986432111 11111 1111123578999999883
No 193
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.37 E-value=1.5e-12 Score=129.75 Aligned_cols=154 Identities=23% Similarity=0.297 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC-eeEEEEecCChHH----
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHAD---- 140 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~---- 140 (451)
-.|+++|++|+|||||+++|++...... +. ...|.......+...+ ..++++|+||+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~----------~~------~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~ 221 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIA----------PY------PFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 221 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEEC----------CC------TTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGG
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCcccc----------Cc------ccceecceeeEEEecCcceEEEEeccccccchhh
Confidence 4689999999999999999985421100 00 0112222222233333 6789999999732
Q ss_pred ---HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHH-----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHH
Q 013007 141 ---YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR-----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (451)
Q Consensus 141 ---~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~-----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~ 212 (451)
+.......+..+|.+++|+|++.....+.......+. ....|. ++++||+|+... +.++ .+.+.++
T Consensus 222 ~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~-ILVlNKlDl~~~-~~~~----~l~~~l~ 295 (416)
T 1udx_A 222 GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPS-LVALNKVDLLEE-EAVK----ALADALA 295 (416)
T ss_dssp SCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCE-EEEEECCTTSCH-HHHH----HHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCE-EEEEECCChhhH-HHHH----HHHHHHH
Confidence 1223334456799999999997111111111111111 135684 578899999864 3222 3334444
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.. ..+++++||+++ +++++|++.|.+.+.
T Consensus 296 ~~-----g~~vi~iSA~~g----------~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 296 RE-----GLAVLPVSALTG----------AGLPALKEALHALVR 324 (416)
T ss_dssp TT-----TSCEEECCTTTC----------TTHHHHHHHHHHHHH
T ss_pred hc-----CCeEEEEECCCc----------cCHHHHHHHHHHHHH
Confidence 32 357999999998 899999999988765
No 194
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.37 E-value=5.9e-13 Score=131.23 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=61.0
Q ss_pred CeeEEEEecCChHHH-------------HHHHHHhcccCCEEEEEEeCCCC-CC-ccHHHHHHHHHHcCCCeEEEEEeec
Q 013007 127 KRHYAHVDCPGHADY-------------VKNMITGAAQMDGGILVVSAPDG-PM-PQTKEHILLARQVGVPSLVCFLNKV 191 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~-------------~~~~~~~~~~~d~~ilVvda~~g-~~-~~t~~~l~~~~~~~ip~iivviNK~ 191 (451)
...++||||||..++ ...+..++..+|++|+|+|+... .. ......+..+...+.| +|+|+||+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDR-TFGVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT-EEEEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCC-EEEEEeCC
Confidence 457999999997665 55566678899999999987542 22 2223333444445677 77899999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeecccccc
Q 013007 192 DLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSA 231 (451)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g 231 (451)
|+.+..... .+.++.... ....+++++|+.++
T Consensus 214 Dl~~~~~~~-------~~~~~~~~~-~~~~~~~~v~~~s~ 245 (360)
T 3t34_A 214 DLMDKGTDA-------VEILEGRSF-KLKYPWVGVVNRSQ 245 (360)
T ss_dssp GGCCTTCCS-------HHHHTTSSS-CCSSCCEEECCCCH
T ss_pred ccCCCcccH-------HHHHcCccc-cccCCeEEEEECCh
Confidence 998633211 112222211 13467888888876
No 195
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.29 E-value=1.1e-11 Score=120.81 Aligned_cols=174 Identities=18% Similarity=0.134 Sum_probs=93.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch------hhhhc-Cc-eEEeeEE--------------
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP------EEKKR-GI-TIATAHV-------------- 121 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~------~e~~~-g~-t~~~~~~-------------- 121 (451)
+...++++|++|+|||||++.|.+.....+.............. ..+.+ +. ..+....
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 44689999999999999999999876554332222211110000 00000 00 0000000
Q ss_pred --------EeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccC
Q 013007 122 --------EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (451)
Q Consensus 122 --------~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~ 193 (451)
.++..+..+.|+||||..+-.. .....+|.+++|+|+..+...+... ... ..++.+ +++||+|+
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~--~~i--~~~~~i-vvlNK~Dl 205 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIK--KGI--FELADM-IAVNKADD 205 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CC--TTH--HHHCSE-EEEECCST
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHH--HHH--hccccE-EEEEchhc
Confidence 0233577899999999643211 1235799999999986542211000 000 123534 67899998
Q ss_pred CChHHHHHHHHHHHHHHHHhcCC--CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 194 VEDEELLELVEMELRELLSFYKF--PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~--~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
....+......+++...+..+.- ..+..|++++||+++ .|+++|++.|.+..
T Consensus 206 ~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g----------~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 206 GDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHG----------KGLDSLWSRIEDHR 259 (337)
T ss_dssp TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTT----------BSHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 65333222223333333332221 011368999999998 78888888877654
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.27 E-value=3e-11 Score=120.42 Aligned_cols=165 Identities=16% Similarity=0.196 Sum_probs=83.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHH-hcCccceeeeeccCCchhhhhcCceEEeeEEEe--eeC--CeeEEEEecCC
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY--ETA--KRHYAHVDCPG 137 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~--~~~--~~~i~iiDtPG 137 (451)
.-.++|+++|+.|+|||||++.|++... ..|..... .+ . ..|+......+ ... ...+++|||||
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~----~~-----~--~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g 97 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPS----HR-----I--KKTVQVEQSKVLIKEGGVQLLLTIVDTPG 97 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC----------------CCEEEEEECC------CEEEEEEECC-
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcc----cC-----C--ccceeeeeEEEEEecCCcccceeeeechh
Confidence 3457899999999999999999986532 11110000 00 0 01111111111 111 23689999999
Q ss_pred hHHHHH------HH--------HHh-----------cc--cCCEEEEEEeCC-CCCCccHHHHHHHHHHcCCCeEEEEEe
Q 013007 138 HADYVK------NM--------ITG-----------AA--QMDGGILVVSAP-DGPMPQTKEHILLARQVGVPSLVCFLN 189 (451)
Q Consensus 138 ~~~~~~------~~--------~~~-----------~~--~~d~~ilVvda~-~g~~~~t~~~l~~~~~~~ip~iivviN 189 (451)
..++.. .+ ..+ +. .+++++++++++ +++.+...+.+..+.. +++ +|+|+|
T Consensus 98 ~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~-iIlVin 175 (418)
T 2qag_C 98 FGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIA 175 (418)
T ss_dssp ----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSE-EEEEEE
T ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCc-EEEEEE
Confidence 876531 11 011 11 245577777776 5777777666666653 677 889999
Q ss_pred eccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 190 KVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 190 K~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
|+|+....+ ....++++.+.++..+ ++++.+|+.++ .++.+++..+.+.+|
T Consensus 176 K~Dll~~~e-v~~~k~~i~~~~~~~~-----i~~~~~sa~~~----------~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 176 KADTLTPEE-CQQFKKQIMKEIQEHK-----IKIYEFPETDD----------EEENKLVKKIKDRLP 226 (418)
T ss_dssp STTSSCHHH-HHHHHHHHHHHHHHHT-----CCCCCCC---------------------------CC
T ss_pred cccCccHHH-HHHHHHHHHHHHHHcC-----CeEEeCCCCCC----------cCHHHHHHHHHhhCC
Confidence 999987544 4445567777777654 57889999877 666666666654443
No 197
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.21 E-value=1.9e-11 Score=119.48 Aligned_cols=131 Identities=20% Similarity=0.188 Sum_probs=85.4
Q ss_pred ceEEeeEEEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCC-----------ccHHHHHHHHHH----
Q 013007 114 ITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-----------PQTKEHILLARQ---- 178 (451)
Q Consensus 114 ~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~-----------~~t~~~l~~~~~---- 178 (451)
.|+......+...+..+.+|||+|+++|......++..++++|+|+|.++-.+ ......+..+..
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 34444444566678889999999999999999999999999999999987321 222223333322
Q ss_pred cCCCeEEEEEeeccCCChH----------------HHHHHHHHHHHHHHHhcCCC--CCCCCeeeccccccccCCCcccc
Q 013007 179 VGVPSLVCFLNKVDLVEDE----------------ELLELVEMELRELLSFYKFP--GDEIPIIRGSATSALQGKNEEIG 240 (451)
Q Consensus 179 ~~ip~iivviNK~D~~~~~----------------~~~~~~~~~~~~~l~~~~~~--~~~~pvi~~Sa~~g~~~~~~~~~ 240 (451)
.++| +|++.||+|+.+.. ...++..+.+...+..+... ...++++++||+++
T Consensus 259 ~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~--------- 328 (353)
T 1cip_A 259 TDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT--------- 328 (353)
T ss_dssp TTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCH---------
T ss_pred cCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCc---------
Confidence 2566 88999999985211 00122222222222232211 23577899999998
Q ss_pred hhhHHHHHHHHHhhC
Q 013007 241 KKAILKLMDAVDEYI 255 (451)
Q Consensus 241 ~~~i~~Ll~~l~~~l 255 (451)
.|+.++++++.+.+
T Consensus 329 -~nV~~vF~~v~~~i 342 (353)
T 1cip_A 329 -KNVQFVFDAVTDVI 342 (353)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHH
Confidence 89999998887644
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.21 E-value=4.5e-11 Score=116.61 Aligned_cols=82 Identities=22% Similarity=0.171 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-----------------Ce
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-----------------KR 128 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-----------------~~ 128 (451)
++|+++|.+|+|||||+|+|++.....+. ..+.|++.....+... ..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~----------------~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN----------------YPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC----------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC----------------CCCceECceEEEEecCCcccceeeeeecccceeee
Confidence 58999999999999999999965211111 1112222211111112 24
Q ss_pred eEEEEecCChHHHHH-------HHHHhcccCCEEEEEEeCCC
Q 013007 129 HYAHVDCPGHADYVK-------NMITGAAQMDGGILVVSAPD 163 (451)
Q Consensus 129 ~i~iiDtPG~~~~~~-------~~~~~~~~~d~~ilVvda~~ 163 (451)
.+.||||||+.++.. .....++.+|++++|+|+++
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 689999999876542 23445678999999999986
No 199
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.20 E-value=6.1e-11 Score=113.68 Aligned_cols=151 Identities=19% Similarity=0.229 Sum_probs=77.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHH-HH-hcCccceeeeeccCCchhhhhcCceEEeeEEEeee--CCeeEEEEecCCh-
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKV-LA-EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET--AKRHYAHVDCPGH- 138 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~-~~-~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~--~~~~i~iiDtPG~- 138 (451)
..++|+++|+.|+|||||+++|.+. .. ..| .... .. +.. .++........+.. ....+++|||||+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~-g~--~~~-----~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGA-AE--KIE-----RTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC---------------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccC-Cc--ccC-----CcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 4579999999999999999999854 22 112 0000 00 000 01111111111111 2356899999998
Q ss_pred ------HHH---HH-------HHHHhcc----------cCCEEEEEEeCCC-CCCccHHHHHHHHHHcCCCeEEEEEeec
Q 013007 139 ------ADY---VK-------NMITGAA----------QMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNKV 191 (451)
Q Consensus 139 ------~~~---~~-------~~~~~~~----------~~d~~ilVvda~~-g~~~~t~~~l~~~~~~~ip~iivviNK~ 191 (451)
+.| .. .....+. .+++++++++.+. ++.+...+.+..+. .+++ +++|+||.
T Consensus 88 ~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~-iilV~~K~ 165 (301)
T 2qnr_A 88 DAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKA 165 (301)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSC-EEEEECCG
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCC-EEEEEEeC
Confidence 322 11 1222221 2345677776654 47666655444443 2456 77999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeecccccc
Q 013007 192 DLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSA 231 (451)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g 231 (451)
|+.+..+ ....++++.++++..+ ++++++||+++
T Consensus 166 Dl~~~~e-~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~ 199 (301)
T 2qnr_A 166 DTLTLKE-RERLKKRILDEIEEHN-----IKIYHLPDAES 199 (301)
T ss_dssp GGSCHHH-HHHHHHHHHHHHHHTT-----CCCCCCC----
T ss_pred CCCCHHH-HHHHHHHHHHHHHHcC-----CeEEecCCccc
Confidence 9987544 2334456777777754 57999999876
No 200
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.16 E-value=5e-11 Score=121.32 Aligned_cols=171 Identities=18% Similarity=0.130 Sum_probs=98.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch-------hhhhcCceEEeeEE-------------Ee
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-------EEKKRGITIATAHV-------------EY 123 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~-------~e~~~g~t~~~~~~-------------~~ 123 (451)
+..+|+++|++|+||||++++|.......|+............. .....++.+..... .+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999887776765544432211110 11222343222100 01
Q ss_pred eeCCeeEEEEecCChH----HHHHHHHHh--cccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChH
Q 013007 124 ETAKRHYAHVDCPGHA----DYVKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE 197 (451)
Q Consensus 124 ~~~~~~i~iiDtPG~~----~~~~~~~~~--~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~ 197 (451)
...++.+.||||||.. .+..++... +..+|.+++|+|+..+.. ....+..+... +|..++|+||+|.....
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~~ 256 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHAKG 256 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCCCC
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCccccch
Confidence 1256789999999964 344443322 226899999999998753 33333333321 45225789999987532
Q ss_pred HHHHHHHHHHHHHHHhcCCC------C-------CCCCeeeccccccccCCCcccchhh-HHHHHHHHHhh
Q 013007 198 ELLELVEMELRELLSFYKFP------G-------DEIPIIRGSATSALQGKNEEIGKKA-ILKLMDAVDEY 254 (451)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~------~-------~~~pvi~~Sa~~g~~~~~~~~~~~~-i~~Ll~~l~~~ 254 (451)
...-.+ .+.++.+ + ...|.+++|++.| .| +.+|++++.+.
T Consensus 257 g~~l~~-------~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G----------~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 257 GGALSA-------VAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLG----------MGDIEGLIDKVNEL 310 (504)
T ss_dssp THHHHH-------HHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCT----------TTTTTTTHHHHTTT
T ss_pred HHHHHH-------HHHhCCCeEEeccccchhhhhccCcceeeehhcC----------CCcHHHHHHHHHHH
Confidence 211111 1122211 0 0124566777776 66 88888888765
No 201
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.15 E-value=4.6e-11 Score=117.14 Aligned_cols=113 Identities=19% Similarity=0.116 Sum_probs=78.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH---
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (451)
...+|+++|.+|+|||||+|+|++.... .....+.|++.....+...+.++.|+||||..+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~----------------v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~ 134 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESE----------------AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK 134 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCC----------------GGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC--
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCc----------------ccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch
Confidence 4469999999999999999999954211 122336777776666778899999999999532
Q ss_pred ----HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHc-----CCCeEEEEEeeccCC
Q 013007 141 ----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-----GVPSLVCFLNKVDLV 194 (451)
Q Consensus 141 ----~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~-----~ip~iivviNK~D~~ 194 (451)
.....+..++.+|++++|+|++++.. +.......+... ..| .++++||+|..
T Consensus 135 ~~~~~g~~~l~~i~~ad~il~vvD~~~p~~-~~~~i~~EL~~~~~~l~~k~-~~i~~nK~d~~ 195 (376)
T 4a9a_A 135 DGRGRGKQVIAVARTCNLLFIILDVNKPLH-HKQIIEKELEGVGIRLNKTP-PDILIKKKEKG 195 (376)
T ss_dssp ---CHHHHHHHHHHHCSEEEEEEETTSHHH-HHHHHHHHHHHTTEEETCCC-CCEEEEECSSS
T ss_pred hhhHHHHHHHHHHHhcCccccccccCccHH-HHHHHHHHHHHhhHhhccCC-hhhhhhHhhhh
Confidence 34556667788999999999986321 111111223322 345 45789999974
No 202
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.14 E-value=6.6e-10 Score=88.09 Aligned_cols=83 Identities=28% Similarity=0.362 Sum_probs=70.4
Q ss_pred CCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccc
Q 013007 262 LDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKR 341 (451)
Q Consensus 262 ~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~ 341 (451)
...|..+.|..++..-+ |+++.|+|++|+|++|+.| |.+ ....+|+||+++++++++|.+||.|+++++|...
T Consensus 31 ~~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~---~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~ 103 (116)
T 1xe1_A 31 KKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGP---SGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG 103 (116)
T ss_dssp SSCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECS---SCEEEEEEEEETTEEESEEETTCEEEEEEESCCC
T ss_pred ecCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCC---ceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc
Confidence 34677888888665555 8999999999999999998 532 0468999999999999999999999999999877
Q ss_pred cCCCCCeEEec
Q 013007 342 EDVQRGQVIAK 352 (451)
Q Consensus 342 ~~i~~G~vl~~ 352 (451)
++++||+|..
T Consensus 104 -~I~~GdVLyv 113 (116)
T 1xe1_A 104 -KVKKGDVLEI 113 (116)
T ss_dssp -CCCTTCEEEE
T ss_pred -ccCCCcEEEE
Confidence 8999999863
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.11 E-value=3e-10 Score=111.45 Aligned_cols=84 Identities=21% Similarity=0.226 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee-------------------eC
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-------------------TA 126 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-------------------~~ 126 (451)
++|+++|.+|+|||||+|+|++.........+ .. ....+. ...+. ..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~--------~T--i~pn~g----~~~v~~~~l~~~~~~~~~~~~~~~~~ 67 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPF--------AT--IDKNVG----VVPLEDERLYALQRTFAKGERVPPVV 67 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCG--------GG--GSTTEE----EEECCCHHHHHHHHHHCBTTBCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCC--------ce--ecccee----eEecChHHHHHHHHHhcccccccccC
Confidence 47999999999999999999976321111100 00 000010 11110 12
Q ss_pred CeeEEEEecCChHHH-------HHHHHHhcccCCEEEEEEeCCC
Q 013007 127 KRHYAHVDCPGHADY-------VKNMITGAAQMDGGILVVSAPD 163 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~-------~~~~~~~~~~~d~~ilVvda~~ 163 (451)
...+.||||||+.++ .......++.+|++++|+|+.+
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 356899999997653 2445566788999999999986
No 204
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.07 E-value=1.3e-09 Score=104.97 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=83.8
Q ss_pred ceEEeeEEEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCC-------CCCCcc----HHHHHHHHHH----
Q 013007 114 ITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAP-------DGPMPQ----TKEHILLARQ---- 178 (451)
Q Consensus 114 ~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~-------~g~~~~----t~~~l~~~~~---- 178 (451)
.|+......+...+..+.+|||+|++.|......++..++++|+|+|.+ +..... ....+..+..
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 3444445556677889999999999999999999999999999999876 221111 2223332222
Q ss_pred cCCCeEEEEEeeccCCChH-----------------HHHHHHHHHHHHHHHhcCC-CCCCCCeeeccccccccCCCcccc
Q 013007 179 VGVPSLVCFLNKVDLVEDE-----------------ELLELVEMELRELLSFYKF-PGDEIPIIRGSATSALQGKNEEIG 240 (451)
Q Consensus 179 ~~ip~iivviNK~D~~~~~-----------------~~~~~~~~~~~~~l~~~~~-~~~~~pvi~~Sa~~g~~~~~~~~~ 240 (451)
.++| ++++.||+|+.+.. ...++..+-+......... ....+.+..+||+++
T Consensus 233 ~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~--------- 302 (327)
T 3ohm_A 233 QNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDT--------- 302 (327)
T ss_dssp TTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCH---------
T ss_pred CCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecC---------
Confidence 2566 88999999985311 0122222222222222221 123456788999998
Q ss_pred hhhHHHHHHHHHhhC
Q 013007 241 KKAILKLMDAVDEYI 255 (451)
Q Consensus 241 ~~~i~~Ll~~l~~~l 255 (451)
.++..+++.+.+.+
T Consensus 303 -~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 303 -ENIRFVFAAVKDTI 316 (327)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHH
Confidence 89998888876643
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.01 E-value=1e-09 Score=100.23 Aligned_cols=168 Identities=17% Similarity=0.185 Sum_probs=90.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeecc---CCchhhhh--cCceEEee-EEE------------ee
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEI---DKAPEEKK--RGITIATA-HVE------------YE 124 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~---d~~~~e~~--~g~t~~~~-~~~------------~~ 124 (451)
...++|+++|+.|+|||||+++|........+......... |....+.. ..+.++.. ... +.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 34689999999999999999999977543322222111110 00000000 00011100 000 00
Q ss_pred eCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHH-HHHHH
Q 013007 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE-LLELV 203 (451)
Q Consensus 125 ~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~-~~~~~ 203 (451)
..+..+.++|++|...- ....-...+..+.|+|+..+...... .....+.| .++|+||+|+.+..+ ..+
T Consensus 116 ~~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~-~iiv~NK~Dl~~~~~~~~~-- 185 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIEK----HPGIMKTA-DLIVINKIDLADAVGADIK-- 185 (226)
T ss_dssp GGGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTC-SEEEEECGGGHHHHTCCHH--
T ss_pred cCCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHhh----hhhHhhcC-CEEEEeccccCchhHHHHH--
Confidence 11236889999993110 00111235677888887543322111 11224677 558999999864211 122
Q ss_pred HHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 204 EMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++.+.++.++ ...+++++||++| .|++++++.|.+.+
T Consensus 186 --~~~~~~~~~~---~~~~~~~~Sa~~g----------~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 186 --KMENDAKRIN---PDAEVVLLSLKTM----------EGFDKVLEFIEKSV 222 (226)
T ss_dssp --HHHHHHHHHC---TTSEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred --HHHHHHHHhC---CCCeEEEEEecCC----------CCHHHHHHHHHHHH
Confidence 3334444432 2468999999999 89999999987654
No 206
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.01 E-value=2.4e-09 Score=103.50 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=58.2
Q ss_pred ceEEeeEEEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCC--------CC---ccHHHHHHHHHH----
Q 013007 114 ITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG--------PM---PQTKEHILLARQ---- 178 (451)
Q Consensus 114 ~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g--------~~---~~t~~~l~~~~~---- 178 (451)
.|+......+...+..+.+|||+|++.|......++..++++|+|+|.++- .. ......+..+..
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 344445555666788899999999999999999999999999999999721 11 112223332222
Q ss_pred cCCCeEEEEEeeccCCC
Q 013007 179 VGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 179 ~~ip~iivviNK~D~~~ 195 (451)
.++| ++++.||+|+..
T Consensus 227 ~~~p-iiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAV-KLIFLNKMDLFE 242 (340)
T ss_dssp TTSE-EEEEEECHHHHH
T ss_pred CCCe-EEEEEECchhhh
Confidence 3566 889999999863
No 207
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.94 E-value=6.9e-09 Score=97.62 Aligned_cols=143 Identities=18% Similarity=0.229 Sum_probs=83.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHh-cCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH---
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAE-EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (451)
.++++++|+.|+|||||++.|++.... .|....... +.......+++..-... ..-...++++|+||..+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~---~i~~~~~~~~i~~v~q~---~~~~~~ltv~d~~~~g~~~~ 75 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREE---KIPKTVEIKAIGHVIEE---GGVKMKLTVIDTPGFGDQIN 75 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC-------CCEEEEECCCC--CCSB
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCc---ccCcceeeeeeEEEeec---CCCcCCceEEechhhhhhcc
Confidence 368999999999999999999986532 232211100 00000111111111110 00123679999999422
Q ss_pred ----------HH-----HHHHHh----------cccCCEEEEEEeCC-CCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 141 ----------YV-----KNMITG----------AAQMDGGILVVSAP-DGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 141 ----------~~-----~~~~~~----------~~~~d~~ilVvda~-~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
|. ...... ++.+++.++++|.. ++..+...+.+..+... ++ +|+|+||+|..
T Consensus 76 ~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~-vI~Vi~K~D~l 153 (270)
T 3sop_A 76 NENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VN-IIPVIAKADTM 153 (270)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SE-EEEEETTGGGS
T ss_pred cHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-Cc-EEEEEeccccC
Confidence 11 111111 22368889999965 78888888888888776 66 88999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCC
Q 013007 195 EDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
...+ ....++.+.+.++..+.
T Consensus 154 t~~e-~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 154 TLEE-KSEFKQRVRKELEVNGI 174 (270)
T ss_dssp CHHH-HHHHHHHHHHHHHHTTC
T ss_pred CHHH-HHHHHHHHHHHHHHcCc
Confidence 8655 34456677777776554
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.93 E-value=6e-09 Score=103.49 Aligned_cols=144 Identities=13% Similarity=0.226 Sum_probs=80.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH--
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD-- 140 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~-- 140 (451)
.++++++|+.|+|||||++.|.+.... |... . ....+.+.....+.+.... ..++++|+||..+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~-g~~~-------~----~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~ 109 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFE-GEPA-------T----HTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQI 109 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-C
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcccc-CCcC-------C----CCCccceEeeEEEEeecCccccccchhhhhhhhhcc
Confidence 467999999999999999999865210 1100 0 0011222221111122222 2689999999532
Q ss_pred -----------HHHH----HHHhc---c-------c--CC-EEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeecc
Q 013007 141 -----------YVKN----MITGA---A-------Q--MD-GGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (451)
Q Consensus 141 -----------~~~~----~~~~~---~-------~--~d-~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D 192 (451)
|+.. .+... . . +| ++++++|+.+++.....+.+..+. .++| +|+|+||+|
T Consensus 110 ~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~-vI~Vi~KtD 187 (427)
T 2qag_B 110 NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVN-IIPIIAKAD 187 (427)
T ss_dssp CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSE-EEEEESCGG
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCC-EEEEEcchh
Confidence 1111 11111 1 1 23 366678888888888777776665 5666 889999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccc
Q 013007 193 LVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSA 228 (451)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa 228 (451)
...+++. ..+.+.+.+.++. ..++++.+|.
T Consensus 188 ~Lt~~E~-~~l~~~I~~~L~~-----~gi~I~~is~ 217 (427)
T 2qag_B 188 AISKSEL-TKFKIKITSELVS-----NGVQIYQFPT 217 (427)
T ss_dssp GSCHHHH-HHHHHHHHHHHBT-----TBCCCCCCC-
T ss_pred ccchHHH-HHHHHHHHHHHHH-----cCCcEEecCC
Confidence 9986553 4444455554443 3467887774
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.91 E-value=1.4e-08 Score=100.78 Aligned_cols=166 Identities=19% Similarity=0.104 Sum_probs=96.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH-hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-CeeEEEEecCChHH--
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHAD-- 140 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~-- 140 (451)
...++++|+.|+|||||+|.|.+... +.|..... ..+..+ .+. .+... ...++++|+||...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~------g~~~t~-~~~-------v~q~~~~~~ltv~D~~g~~~~~ 134 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTG------VVEVTM-ERH-------PYKHPNIPNVVFWDLPGIGSTN 134 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCC------C----C-CCE-------EEECSSCTTEEEEECCCGGGSS
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEEC------Ceecce-eEE-------eccccccCCeeehHhhcccchH
Confidence 34899999999999999999997532 22322111 111101 111 12212 23689999999532
Q ss_pred -HHHHHHH--hcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC-h-------HHHHHHHHHHHHH
Q 013007 141 -YVKNMIT--GAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-D-------EELLELVEMELRE 209 (451)
Q Consensus 141 -~~~~~~~--~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~-------~~~~~~~~~~~~~ 209 (451)
-..+.+. ++...|..++ ++... .+.|....+..+...+.| +++|+||.|+.- + ....+.+.+.+.+
T Consensus 135 ~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p-~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~ 211 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKE-FYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRL 211 (413)
T ss_dssp CCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCE-EEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCC-eEEEEecCcccccCcccccCCHHHHHHHHHHHHH
Confidence 1222222 3444566555 77654 456666666777777887 779999999751 0 0011222333334
Q ss_pred HH----HhcCCCCCCCCeeeccc--cccccCCCcccchhhHHHHHHHHHhhCCCCC
Q 013007 210 LL----SFYKFPGDEIPIIRGSA--TSALQGKNEEIGKKAILKLMDAVDEYIPDPE 259 (451)
Q Consensus 210 ~l----~~~~~~~~~~pvi~~Sa--~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~ 259 (451)
+. ...+. +...+|++|+ ..+ +++++|.+.+.+.+|...
T Consensus 212 l~~~~l~~~g~--~~~~iiliSsh~l~~----------~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 212 NCVNTFRENGI--AEPPIFLLSNKNVCH----------YDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHHTTC--SSCCEEECCTTCTTS----------TTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhcCC--CCCcEEEEecCcCCc----------cCHHHHHHHHHHhCccch
Confidence 33 33332 2246899998 443 679999999999888543
No 210
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.90 E-value=2.9e-09 Score=103.89 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=48.0
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCC-------CCCcc----HHHHHHHHHH----cCCCeEEEEEeec
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD-------GPMPQ----TKEHILLARQ----VGVPSLVCFLNKV 191 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~-------g~~~~----t~~~l~~~~~----~~ip~iivviNK~ 191 (451)
...+.+|||+|+++|......++..++++|+|+|.++ ..... ....+..+.. .++| +|+|.||+
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiLvgNK~ 260 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNKF 260 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE-EEEEEECH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe-EEEEEECc
Confidence 4678999999999999999999999999999999872 11112 2223322222 2566 88999999
Q ss_pred cCC
Q 013007 192 DLV 194 (451)
Q Consensus 192 D~~ 194 (451)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 984
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.87 E-value=3.5e-09 Score=104.27 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=48.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-----------------
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA----------------- 126 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~----------------- 126 (451)
...+|+++|.+|+|||||+|+|++....... ..+.|++.....+...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~----------------~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~ 84 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAEN----------------FPFCTIDPNESRVPVPDERFDFLCQYHKPASKI 84 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccC----------------CCccccCceeEEEEECCccceeeccccCccccc
Confidence 3468999999999999999999965221111 1122322221111111
Q ss_pred CeeEEEEecCChHHHHH-------HHHHhcccCCEEEEEEeCCC
Q 013007 127 KRHYAHVDCPGHADYVK-------NMITGAAQMDGGILVVSAPD 163 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~-------~~~~~~~~~d~~ilVvda~~ 163 (451)
...+.||||||+.++.. .....++.+|++++|+|+.+
T Consensus 85 ~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 23589999999877543 45567789999999999975
No 212
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.79 E-value=6.1e-09 Score=101.98 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=76.2
Q ss_pred eEEeeEEEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCC-----------ccHHHHHHHHHH----c
Q 013007 115 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-----------PQTKEHILLARQ----V 179 (451)
Q Consensus 115 t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~-----------~~t~~~l~~~~~----~ 179 (451)
|+......+...+..+.+|||+|++.|......++..++++|+|+|.++-.+ ......+..... .
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 3333444566678889999999999999999999999999999999987321 112223333222 2
Q ss_pred CCCeEEEEEeeccCCChH-----------------HHHHHHHHHHHHHHHhcCCC--CCCCCeeeccccccccCCCcccc
Q 013007 180 GVPSLVCFLNKVDLVEDE-----------------ELLELVEMELRELLSFYKFP--GDEIPIIRGSATSALQGKNEEIG 240 (451)
Q Consensus 180 ~ip~iivviNK~D~~~~~-----------------~~~~~~~~~~~~~l~~~~~~--~~~~pvi~~Sa~~g~~~~~~~~~ 240 (451)
++| +|+++||+|+.+.. ...++..+-+...+..+.-. ...+.++++||+++
T Consensus 268 ~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~--------- 337 (362)
T 1zcb_A 268 NVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINT--------- 337 (362)
T ss_dssp TSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCH---------
T ss_pred CCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCc---------
Confidence 566 88999999985211 11122222221112222111 23467889999998
Q ss_pred hhhHHHHHHHHHhhC
Q 013007 241 KKAILKLMDAVDEYI 255 (451)
Q Consensus 241 ~~~i~~Ll~~l~~~l 255 (451)
.++.++++.+.+.+
T Consensus 338 -~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 338 -ENIRLVFRDVKDTI 351 (362)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHH
Confidence 89999988886643
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.78 E-value=7.5e-09 Score=103.72 Aligned_cols=128 Identities=18% Similarity=0.175 Sum_probs=73.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeecc------CCchh-hhhcCceEEeeE--------E----Eeee
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEI------DKAPE-EKKRGITIATAH--------V----EYET 125 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~------d~~~~-e~~~g~t~~~~~--------~----~~~~ 125 (451)
...|+++|.+|+||||+++.|.......|+......... +.... ....|+.+.... . --..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999987776665443322111 00000 001111111100 0 0001
Q ss_pred CCeeEEEEecCChHH----HHHHHHHh--cccCCEEEEEEeCCCCCCccHHHHHHHHHHcCC-CeEEEEEeeccCCC
Q 013007 126 AKRHYAHVDCPGHAD----YVKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLARQVGV-PSLVCFLNKVDLVE 195 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~----~~~~~~~~--~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~i-p~iivviNK~D~~~ 195 (451)
.++.+.|+||||... +...+... +..+|.+++|+|+..+. .....+.... .++ +...+|+||+|...
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~-~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK-EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH-TTSCSCEEEEEECSSSCS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh-hcccCCeEEEEeCCCCcc
Confidence 456799999999543 34433222 23589999999998763 2222222222 235 54568999999865
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.78 E-value=3.8e-10 Score=111.15 Aligned_cols=121 Identities=12% Similarity=0.188 Sum_probs=69.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH----
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD---- 140 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~---- 140 (451)
..+|+++|.+|+|||||+|+|++....... +........|+|.......+. ..+.++||||..+
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~---------~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~ 227 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETE---------NVITTSHFPGTTLDLIDIPLD---EESSLYDTPGIINHHQM 227 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCS---------SCCEEECCC----CEEEEESS---SSCEEEECCCBCCTTSG
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccc---------cceecCCCCCeecceEEEEec---CCeEEEeCCCcCcHHHH
Confidence 368999999999999999999976321100 011112233666655444332 2389999999432
Q ss_pred --H-HHHHHHh---cccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHH
Q 013007 141 --Y-VKNMITG---AAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE 198 (451)
Q Consensus 141 --~-~~~~~~~---~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~ 198 (451)
+ ..+.+.. ....+..++++|+...........+..+...+.| +++++||+|.....+
T Consensus 228 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~-~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 228 AHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRA-FTCHFSNRLTIHRTK 290 (368)
T ss_dssp GGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEEEE
T ss_pred HHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCce-EEEEecCcccccccc
Confidence 1 1222222 3567899999998542211111112223344667 789999999987433
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.75 E-value=3.6e-10 Score=111.39 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=72.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH----
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD---- 140 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~---- 140 (451)
..+|+++|.+|+|||||+|+|++....... .......+|+|.+.....+. ..+.++||||..+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~----------~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~ 228 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGN----------VITTSYFPGTTLDMIEIPLE---SGATLYDTPGIINHHQM 228 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTC----------CCEEEECTTSSCEEEEEECS---TTCEEEECCSCCCCSSG
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCcc----------ceeecCCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHH
Confidence 368999999999999999999976432211 11112233666665544332 2489999999432
Q ss_pred --H-HHHHHHhc---ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh
Q 013007 141 --Y-VKNMITGA---AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (451)
Q Consensus 141 --~-~~~~~~~~---~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~ 196 (451)
+ .......+ ...|.+++++++...........+..+...+.| +++++||+|....
T Consensus 229 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~-~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 229 AHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRS-FVCYMANELTVHR 289 (369)
T ss_dssp GGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEE
T ss_pred HHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCce-EEEEecCCccccc
Confidence 1 11222222 568999999998542211111112333344667 7899999998863
No 216
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.65 E-value=2.3e-08 Score=95.70 Aligned_cols=103 Identities=23% Similarity=0.252 Sum_probs=74.3
Q ss_pred eEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCC-Cc-cHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHH
Q 013007 129 HYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-MP-QTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEME 206 (451)
Q Consensus 129 ~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~-~~-~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~ 206 (451)
.+.+||| +++|......+++.+|++++|+|+++.. .. .....+..+...++| +++|+||+|+.++... ++
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~p-iilv~NK~DL~~~~~v-----~~ 135 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELE-TVMVINKMDLYDEDDL-----RK 135 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHHH-----HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEeHHHcCCchhH-----HH
Confidence 7899999 8887666667889999999999999754 22 223344445556788 6789999999864332 23
Q ss_pred HHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHH
Q 013007 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (451)
Q Consensus 207 ~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~ 252 (451)
..++++.+.. . .+++++||++| .|++++++.+.
T Consensus 136 ~~~~~~~~~~--~-~~~~~~SAktg----------~gv~~lf~~l~ 168 (301)
T 1u0l_A 136 VRELEEIYSG--L-YPIVKTSAKTG----------MGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHHTT--T-SCEEECCTTTC----------TTHHHHHHHHS
T ss_pred HHHHHHHHhh--h-CcEEEEECCCC----------cCHHHHHHHhc
Confidence 4445554432 1 68999999999 88888888763
No 217
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.61 E-value=3.4e-07 Score=91.29 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=84.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCc-------hhhhhcCceEEeeEE-------------Eee
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-------PEEKKRGITIATAHV-------------EYE 124 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~-------~~e~~~g~t~~~~~~-------------~~~ 124 (451)
...|+++|.+|+||||++..|...+...|+............ ......|+.+..... .+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999988877776554433221111 011122332221100 011
Q ss_pred eCCeeEEEEecCChH----HHHHHHH--HhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHH
Q 013007 125 TAKRHYAHVDCPGHA----DYVKNMI--TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE 198 (451)
Q Consensus 125 ~~~~~i~iiDtPG~~----~~~~~~~--~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~ 198 (451)
..+..+.||||||.. ....++. ..+..+|.++||+|+..|- .....+..... .++...+|+||+|......
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~-~~~i~gVIlTKlD~~~~gG 256 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKE-ATPIGSIIVTKLDGSAKGG 256 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHH-SCTTEEEEEECCSSCSSHH
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHh-hCCCeEEEEECCCCccccc
Confidence 234789999999932 2333322 2234589999999998742 22333333332 2333457899999876433
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCeeeccc
Q 013007 199 LLELVEMELRELLSFYKFPGDEIPIIRGSA 228 (451)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa 228 (451)
. +......+ ..|+.+++.
T Consensus 257 ~-------~ls~~~~~-----g~PI~fig~ 274 (443)
T 3dm5_A 257 G-------ALSAVAAT-----GAPIKFIGT 274 (443)
T ss_dssp H-------HHHHHHTT-----CCCEEEEEC
T ss_pred H-------HHHHHHHH-----CCCEEEEEc
Confidence 2 11223333 357877775
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.54 E-value=1.2e-06 Score=83.47 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=75.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch-h------hhhcCceEEeeE-------------EEee
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-E------EKKRGITIATAH-------------VEYE 124 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~-~------e~~~g~t~~~~~-------------~~~~ 124 (451)
...|+++|..|+||||++..|.......|.............. . ....|+.+-... ..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999999887766654433322111110 0 111233221110 0011
Q ss_pred eCCeeEEEEecCChHH--HHHHHH------HhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 125 TAKRHYAHVDCPGHAD--YVKNMI------TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 125 ~~~~~i~iiDtPG~~~--~~~~~~------~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
..++.+.||||||... ....+. ..+..+|.+++|+|+..+ .+....+..... .++...+|+||+|...
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTA 253 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCT
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCc
Confidence 2567899999999655 211111 234568999999999764 333334433332 4564557899999764
No 219
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.49 E-value=2.6e-07 Score=91.29 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=56.4
Q ss_pred eEEeeEEEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCC-------CCc----cHHHHHHHHHH----c
Q 013007 115 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-------PMP----QTKEHILLARQ----V 179 (451)
Q Consensus 115 t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g-------~~~----~t~~~l~~~~~----~ 179 (451)
|+......+...+..+.+|||+|+++|......++..++++|+|+|.++- ... .....+..+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 33333445566678899999999999999999999999999999999861 111 12223333322 2
Q ss_pred CCCeEEEEEeeccCC
Q 013007 180 GVPSLVCFLNKVDLV 194 (451)
Q Consensus 180 ~ip~iivviNK~D~~ 194 (451)
++| +|+|.||+|+.
T Consensus 284 ~~p-iiLvgNK~DL~ 297 (402)
T 1azs_C 284 TIS-VILFLNKQDLL 297 (402)
T ss_dssp SCC-EEEEEECHHHH
T ss_pred CCe-EEEEEEChhhh
Confidence 567 88999999985
No 220
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.48 E-value=1.1e-06 Score=87.65 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=75.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch-------hhhhcCceEEeeEE-------------Eee
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-------EEKKRGITIATAHV-------------EYE 124 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~-------~e~~~g~t~~~~~~-------------~~~ 124 (451)
...|+++|+.|+||||++..|.......|.............. .....|+....... .+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887777665443322111100 00111322211100 011
Q ss_pred eCCeeEEEEecCChHH------HHHHHHHh--cccCCEEEEEEeCCCCCCccHHHHHHHHH-HcCCCeEEEEEeeccCCC
Q 013007 125 TAKRHYAHVDCPGHAD------YVKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 125 ~~~~~i~iiDtPG~~~------~~~~~~~~--~~~~d~~ilVvda~~g~~~~t~~~l~~~~-~~~ip~iivviNK~D~~~ 195 (451)
..+..+.|+||||... +..++... ....|.++||+|+..|. .....+.... ..++ ..+++||+|...
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~~--~gVIlTKlD~~a 252 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQASPI--GSVIITKMDGTA 252 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHCSS--EEEEEECGGGCS
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhcccCC--cEEEEecccccc
Confidence 2367899999999533 44444332 22469999999998752 2233333333 3333 347899999875
Q ss_pred h
Q 013007 196 D 196 (451)
Q Consensus 196 ~ 196 (451)
.
T Consensus 253 ~ 253 (433)
T 3kl4_A 253 K 253 (433)
T ss_dssp C
T ss_pred c
Confidence 3
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.46 E-value=4.6e-07 Score=85.65 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=65.7
Q ss_pred EEecCChH-HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHH
Q 013007 132 HVDCPGHA-DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (451)
Q Consensus 132 iiDtPG~~-~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (451)
+-+.|||. +..+.+...+..+|+++.|+||+++........-.++ .++| .++|+||+|+.+.+. . +...++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp-~ilVlNK~DL~~~~~-~----~~~~~~ 74 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKP-RIMLLNKADKADAAV-T----QQWKEH 74 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSC-EEEEEECGGGSCHHH-H----HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCC-EEEEEECcccCCHHH-H----HHHHHH
Confidence 44679987 5778888899999999999999987665532222222 3566 668999999997422 1 223344
Q ss_pred HHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++..+ .+++++||.++ .|+.+|++.+.+.+
T Consensus 75 ~~~~g-----~~~i~iSA~~~----------~gi~~L~~~i~~~l 104 (282)
T 1puj_A 75 FENQG-----IRSLSINSVNG----------QGLNQIVPASKEIL 104 (282)
T ss_dssp HHTTT-----CCEEECCTTTC----------TTGGGHHHHHHHHH
T ss_pred HHhcC-----CcEEEEECCCc----------ccHHHHHHHHHHHH
Confidence 44332 47999999988 67777776665544
No 222
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.44 E-value=2.7e-07 Score=90.92 Aligned_cols=84 Identities=21% Similarity=0.234 Sum_probs=54.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHH-hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC---------------
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--------------- 127 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--------------- 127 (451)
...+++++|++|+|||||+|+|++... ..+. ..++|++.....+...+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~----------------~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~ 82 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPAN----------------YPYATIDPEEAKVAVPDERFDWLCEAYKPKSR 82 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTC----------------CSSCCCCTTEEEEEECCHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccC----------------CCceeecceeeeeeeCCcchhhhhhhcccccc
Confidence 356999999999999999999997422 1111 11223222221122221
Q ss_pred --eeEEEEecCChHH-------HHHHHHHhcccCCEEEEEEeCCC
Q 013007 128 --RHYAHVDCPGHAD-------YVKNMITGAAQMDGGILVVSAPD 163 (451)
Q Consensus 128 --~~i~iiDtPG~~~-------~~~~~~~~~~~~d~~ilVvda~~ 163 (451)
..+.++|+||... +.......++.+|.+++|+|+.+
T Consensus 83 v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 83 VPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp ECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3579999999533 33345566778999999999975
No 223
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.38 E-value=1e-06 Score=88.17 Aligned_cols=128 Identities=18% Similarity=0.148 Sum_probs=74.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhc-CccceeeeeccCCc-h------hhhhcCceEEeeE-------------EE
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEE-GKAKAIAFDEIDKA-P------EEKKRGITIATAH-------------VE 122 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~-~------~e~~~g~t~~~~~-------------~~ 122 (451)
+...|+++|+.|+||||++..|...+... |+............ . .....++.+-... ..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34688999999999999999999888777 76554432221111 0 0112233222110 01
Q ss_pred eeeCCeeEEEEecCChHHH----HHHHH--HhcccCCEEEEEEeCCCCCCccHHHHHHHHH-HcCCCeEEEEEeeccCCC
Q 013007 123 YETAKRHYAHVDCPGHADY----VKNMI--TGAAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 123 ~~~~~~~i~iiDtPG~~~~----~~~~~--~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~-~~~ip~iivviNK~D~~~ 195 (451)
+...++.+.||||||...+ ...+. ..+..+|.+++|+|+..+. .....+.... ..++. -+++||+|...
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~~~l~i~--gvVlnK~D~~~ 254 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFNEALPLT--GVVLTKVDGDA 254 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHHHHSCCC--CEEEECTTSSS
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHhccCCCe--EEEEecCCCCc
Confidence 1124678999999995443 22211 1234689999999998762 2223332222 23443 35899999764
No 224
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.31 E-value=7.3e-07 Score=87.65 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=69.6
Q ss_pred EEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHH
Q 013007 130 YAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRE 209 (451)
Q Consensus 130 i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~ 209 (451)
+.-+|+| +++|.+........+|++++|+|+++.......+....+ .+.| +++|+||+|+.+.+...+.+.+.+.+
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~p-iilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNP-ILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSC-EEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCC-EEEEEEChhcCCCccCHHHHHHHHHH
Confidence 3444554 778888777777889999999999975432221111111 2567 77899999998643222334445555
Q ss_pred HHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 210 ~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+++..|+. ..+++++||++| .|+.+|++.+.++.
T Consensus 127 ~~~~~g~~--~~~v~~iSA~~g----------~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 127 MAEELGLC--PVDVCLVSAAKG----------IGMAKVMEAINRYR 160 (369)
T ss_dssp HHHTTTCC--CSEEEECBTTTT----------BTHHHHHHHHHHHH
T ss_pred HHHHcCCC--cccEEEEECCCC----------CCHHHHHHHHHhhc
Confidence 66666652 246899999998 88999998887654
No 225
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.23 E-value=3.7e-06 Score=80.29 Aligned_cols=87 Identities=20% Similarity=0.180 Sum_probs=60.2
Q ss_pred HhcccCCEEEEEEeCCCCC-Ccc-HHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCee
Q 013007 147 TGAAQMDGGILVVSAPDGP-MPQ-TKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPII 224 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~-~~~-t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi 224 (451)
..++.+|.+++|+|+++.. ... ..+.+..+...++| +++|+||+|+.++.+ .+. .++..++.+.++ .+++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~~~-v~~-~~~~~~~~~~~g-----~~~~ 146 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVE-PVIVFNKIDLLNEEE-KKE-LERWISIYRDAG-----YDVL 146 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHH-HHH-HHHHHHHHHHTT-----CEEE
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCC-EEEEEEcccCCCccc-cHH-HHHHHHHHHHCC-----CeEE
Confidence 4688999999999999754 322 23455566667888 568999999987432 111 123445555544 4799
Q ss_pred eccccccccCCCcccchhhHHHHHHHH
Q 013007 225 RGSATSALQGKNEEIGKKAILKLMDAV 251 (451)
Q Consensus 225 ~~Sa~~g~~~~~~~~~~~~i~~Ll~~l 251 (451)
++||+++ .|+++|++.+
T Consensus 147 ~~SA~~g----------~gi~~L~~~l 163 (302)
T 2yv5_A 147 KVSAKTG----------EGIDELVDYL 163 (302)
T ss_dssp ECCTTTC----------TTHHHHHHHT
T ss_pred EEECCCC----------CCHHHHHhhc
Confidence 9999998 7777777665
No 226
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.21 E-value=1.3e-06 Score=85.74 Aligned_cols=102 Identities=16% Similarity=0.067 Sum_probs=68.3
Q ss_pred ChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHH--cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhc
Q 013007 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (451)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~ 214 (451)
..++|.+......+.+|++++|+|+++.. ......+.. .+.| +++|+||+|+.+.+...+.+++.+..+++..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p-~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNK-VLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSC-EEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCc-EEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 35778877777777889999999998721 111111111 2667 6789999999864322233444455566666
Q ss_pred CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 215 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++. ..+++.+||++| .|+++|++.|.++.
T Consensus 130 g~~--~~~v~~iSA~~g----------~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 130 GLK--PEDVFLISAAKG----------QGIAELADAIEYYR 158 (368)
T ss_dssp TCC--CSEEEECCTTTC----------TTHHHHHHHHHHHH
T ss_pred CCC--cccEEEEeCCCC----------cCHHHHHhhhhhhc
Confidence 652 246899999999 88999999887653
No 227
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=98.13 E-value=2.1e-06 Score=66.16 Aligned_cols=82 Identities=20% Similarity=0.356 Sum_probs=70.9
Q ss_pred eEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCC
Q 013007 267 LMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQR 346 (451)
Q Consensus 267 ~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 346 (451)
.+.|.++|+++..|+++..+|.+|.++.+..+++...+.. -.+.++.|+..+..++.++.+|.-|++.+.+. .|++.
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~v-I~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~ 84 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIV-VYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKE 84 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSE-EEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSS
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEE-EEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCC
Confidence 3567788999999999999999999999999999885431 24568999999999999999999999998754 59999
Q ss_pred CeEEe
Q 013007 347 GQVIA 351 (451)
Q Consensus 347 G~vl~ 351 (451)
||+|-
T Consensus 85 GD~Ie 89 (99)
T 1d1n_A 85 GDVIE 89 (99)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 99985
No 228
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.09 E-value=2.1e-05 Score=70.14 Aligned_cols=124 Identities=15% Similarity=0.060 Sum_probs=77.1
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee-----------eCCeeEEEEe
Q 013007 67 NVGTI-GHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-----------TAKRHYAHVD 134 (451)
Q Consensus 67 ~I~vi-G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-----------~~~~~i~iiD 134 (451)
.|++. +..|+||||+.-.|...+...|+...............-.............. ...+.+.++|
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD 82 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVD 82 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEE
Confidence 56677 56889999999999888877776554432211111000000000001111111 1346799999
Q ss_pred cCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcC-----CCeEEEEEeeccCC
Q 013007 135 CPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG-----VPSLVCFLNKVDLV 194 (451)
Q Consensus 135 tPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~-----ip~iivviNK~D~~ 194 (451)
||+... ......+..+|.+++++.++... ..+...+..+...+ ++ +.+|+||+|..
T Consensus 83 ~~~~~~--~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~~ 143 (206)
T 4dzz_A 83 GAGSLS--VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVE-ARFLITRKIEM 143 (206)
T ss_dssp CCSSSS--HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCE-EEEEECSBCTT
T ss_pred CCCCCC--HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCc-EEEEEeccCCC
Confidence 998653 34445566799999999998766 77777777777553 45 57899999954
No 229
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.08 E-value=8.5e-07 Score=91.72 Aligned_cols=101 Identities=17% Similarity=0.098 Sum_probs=56.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEE--Ee-eeCCeeEEEEecCCh
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHV--EY-ETAKRHYAHVDCPGH 138 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~--~~-~~~~~~i~iiDtPG~ 138 (451)
..+...|+++|.+|+|||||+|+|++... + +. . .... ++.|.....+ .+ ...+..+.|+||||.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~--~---~~---~-~~tt----~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKK--G---FS---L-GSTV----QSHTKGIWMWCVPHPKKPGHILVLLDTEGL 101 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSS--C---SC---C-CCSS----SCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCC--c---cc---c-CCCC----CCceeEEEEeecccccCCCceEEEecCCCc
Confidence 34568999999999999999999985411 0 00 0 0000 1122111111 11 124578999999995
Q ss_pred HHHHH------HHHHhcc--cCCEEEEEEeCCCCCCccHHHHHHHHH
Q 013007 139 ADYVK------NMITGAA--QMDGGILVVSAPDGPMPQTKEHILLAR 177 (451)
Q Consensus 139 ~~~~~------~~~~~~~--~~d~~ilVvda~~g~~~~t~~~l~~~~ 177 (451)
.+..+ ..+.++. .++ ++|+|+..++..+....+..+.
T Consensus 102 ~~~~~~~~~~~~~~fala~llss--~lv~n~~~~i~~~dl~~l~~v~ 146 (592)
T 1f5n_A 102 GDVEKGDNQNDSWIFALAVLLSS--TFVYNSIGTINQQAMDQLYYVT 146 (592)
T ss_dssp CCGGGCCCTTHHHHHHHHHHHCS--EEEEEEESCSSHHHHHTTHHHH
T ss_pred CcccccchhHHHHHHHHHHHhcC--eEEEECCCCccHHHHHHHHHHH
Confidence 43211 1111111 133 6778888888877776665543
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.08 E-value=2.3e-06 Score=79.90 Aligned_cols=94 Identities=13% Similarity=0.091 Sum_probs=61.4
Q ss_pred cCChHHH-HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 135 CPGHADY-VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 135 tPG~~~~-~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
-|||... .+.+...+..+|+++.|+||+++........ .++ ++| .++|+||+|+.+++. .+ ...++++.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~-~iivlNK~DL~~~~~-~~----~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKE-TIILLNKVDIADEKT-TK----KWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSE-EEEEEECGGGSCHHH-HH----HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCC-cEEEEECccCCCHHH-HH----HHHHHHHH
Confidence 4898764 4577788899999999999998665432111 112 777 568999999997432 22 23344444
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.+ .++ ++||.++ .|+.+|++.+...
T Consensus 74 ~g-----~~v-~iSa~~~----------~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QG-----KRV-ITTHKGE----------PRKVLLKKLSFDR 98 (262)
T ss_dssp TT-----CCE-EECCTTS----------CHHHHHHHHCCCT
T ss_pred cC-----CeE-EEECCCC----------cCHHHHHHHHHHh
Confidence 43 467 9999988 8899998887654
No 231
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.08 E-value=2.6e-06 Score=80.50 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=34.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (451)
..++++++|.+|+|||||+|+|++. .. .......|+|........ +..+.++||||.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~------~~---------~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~ 175 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKK------NI---------AKTGDRPGITTSQQWVKV---GKELELLDTPGI 175 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTS------CC---------C------------CCEEE---TTTEEEEECCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcC------ce---------eecCCCCCeeeeeEEEEe---CCCEEEEECcCc
Confidence 4579999999999999999999843 11 111223355555443322 346899999995
No 232
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.07 E-value=1.1e-05 Score=64.33 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=70.9
Q ss_pred eEEEEEEEeeCCCce---EEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEecccccc-
Q 013007 267 LMPIEDVFSIQGRGT---VATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRE- 342 (451)
Q Consensus 267 ~~~v~~~~~~~~~G~---v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~- 342 (451)
.+.|.++|+++..|+ |+..+|..|.++.+..+++...+.. -.+.++.|+..+..++.++..|.-|++.+.+ .+
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~v-I~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~--fni 88 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQV-IWKGSLTSLKHHKDDISVIKTGMDCGLSLDE--EKV 88 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEE-EEEECCSEEESSSSCCSEECTTCEEEEECSC--TTS
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEE-EEEeEehhhcccccccceecCCCEEEEEEcc--CCC
Confidence 467889999988888 9999999999999999999885431 2456889999999999999999999999874 35
Q ss_pred CCCCCeEEec
Q 013007 343 DVQRGQVIAK 352 (451)
Q Consensus 343 ~i~~G~vl~~ 352 (451)
|++.||+|-.
T Consensus 89 Dik~GDiIE~ 98 (120)
T 2crv_A 89 EFKPGDQVIC 98 (120)
T ss_dssp CCCTTEEEEE
T ss_pred CCCCCCEEEE
Confidence 8999999953
No 233
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.03 E-value=1e-05 Score=81.54 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=69.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchh---------hhhcCceEEeeEEE-------------
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPE---------EKKRGITIATAHVE------------- 122 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~---------e~~~g~t~~~~~~~------------- 122 (451)
.-.++++|..|+|||||++.|.+.....+....... .|.... ...+++.+-.....
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g--~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA--GDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC--CCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEec--CcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 347899999999999999999987665433222211 121110 01223333211100
Q ss_pred eeeCCeeEEEEecCChHH----HHHH---HHHhcc-----cCCEEEEEEeCCCCCCccHHHHHHHH-HHcCCCeEEEEEe
Q 013007 123 YETAKRHYAHVDCPGHAD----YVKN---MITGAA-----QMDGGILVVSAPDGPMPQTKEHILLA-RQVGVPSLVCFLN 189 (451)
Q Consensus 123 ~~~~~~~i~iiDtPG~~~----~~~~---~~~~~~-----~~d~~ilVvda~~g~~~~t~~~l~~~-~~~~ip~iivviN 189 (451)
....+..+.|+||+|... +..+ +...++ ..+-++||+|+..|- .....+... ...++. . +++|
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~it-g-vIlT 446 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVGLT-G-ITLT 446 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTCCS-E-EEEE
T ss_pred HHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcCCC-E-EEEE
Confidence 012456789999999422 2222 222111 256789999988652 222233332 345777 4 5899
Q ss_pred eccCCC
Q 013007 190 KVDLVE 195 (451)
Q Consensus 190 K~D~~~ 195 (451)
|+|-..
T Consensus 447 KLD~ta 452 (503)
T 2yhs_A 447 KLDGTA 452 (503)
T ss_dssp CGGGCS
T ss_pred cCCCcc
Confidence 999753
No 234
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.00 E-value=9.9e-06 Score=77.83 Aligned_cols=126 Identities=19% Similarity=0.177 Sum_probs=69.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch-----hhh-----hcCceEE-eeEE------------
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-----EEK-----KRGITIA-TAHV------------ 121 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~-----~e~-----~~g~t~~-~~~~------------ 121 (451)
...|+++|..|+||||++..|.+.....|.............. ..- ..++.+- ....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l 184 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAI 184 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHHH
Confidence 4578999999999999999999877766544333221111111 000 1233222 0000
Q ss_pred -EeeeCCeeEEEEecCChHHHH----HHHH---Hhc-----ccCCEEEEEEeCCCCCCccHHHHHHHHHHcC--CCeEEE
Q 013007 122 -EYETAKRHYAHVDCPGHADYV----KNMI---TGA-----AQMDGGILVVSAPDGPMPQTKEHILLARQVG--VPSLVC 186 (451)
Q Consensus 122 -~~~~~~~~i~iiDtPG~~~~~----~~~~---~~~-----~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~--ip~iiv 186 (451)
.....++.+.||||||..... ..+. ..+ ..+|.+++|+|+..+ ..+ +..++.+. .+..=+
T Consensus 185 ~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~---l~~~~~~~~~~~i~Gv 259 (320)
T 1zu4_A 185 KKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNG---VIQAEEFSKVADVSGI 259 (320)
T ss_dssp HHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHH---HHHHHHHTTTSCCCEE
T ss_pred HHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHH---HHHHHHHhhcCCCcEE
Confidence 001246789999999954432 1111 111 237899999999854 222 22233221 232236
Q ss_pred EEeeccCCC
Q 013007 187 FLNKVDLVE 195 (451)
Q Consensus 187 viNK~D~~~ 195 (451)
++||+|...
T Consensus 260 Vltk~d~~~ 268 (320)
T 1zu4_A 260 ILTKMDSTS 268 (320)
T ss_dssp EEECGGGCS
T ss_pred EEeCCCCCC
Confidence 899999754
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.00 E-value=1.4e-05 Score=77.00 Aligned_cols=128 Identities=20% Similarity=0.184 Sum_probs=72.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCC-chhh------hhcCceEEeeEEEe-------------
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDK-APEE------KKRGITIATAHVEY------------- 123 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~-~~~e------~~~g~t~~~~~~~~------------- 123 (451)
+.-.++++|+.|+|||||++.|.+.....+............ ...+ +..|+.+.......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 346899999999999999999998776554433222221111 1111 12233221110000
Q ss_pred eeCCeeEEEEecCChHH----HHHHHHH--hcccCCEEEEEEeCCCCCCccHHHHHHHHH-HcCCCeEEEEEeeccCCC
Q 013007 124 ETAKRHYAHVDCPGHAD----YVKNMIT--GAAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 124 ~~~~~~i~iiDtPG~~~----~~~~~~~--~~~~~d~~ilVvda~~g~~~~t~~~l~~~~-~~~ip~iivviNK~D~~~ 195 (451)
...+..+.++||+|... +..++.. ..-.+|-.++++|+..+ .+..+.+.... ..++. . +++||+|...
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~it-~-iilTKlD~~a 282 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKID-G-IILTKLDADA 282 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCC-E-EEEECGGGCS
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCC-E-EEEeCcCCcc
Confidence 01245678899999532 3333322 12247999999998775 23333443333 45666 4 6899999754
No 236
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.91 E-value=2.8e-05 Score=69.05 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHH----HH-H---cCCCeEEEEEeec-cCCChHHHHHHHHHHH
Q 013007 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILL----AR-Q---VGVPSLVCFLNKV-DLVEDEELLELVEMEL 207 (451)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~----~~-~---~~ip~iivviNK~-D~~~~~~~~~~~~~~~ 207 (451)
|+..+......++..+|++|||||+++......++.+.. +. . .++| ++|+.||. |+...-. ..++.+.+
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~Ams-~~EI~e~L 188 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMP-CFYLAHEL 188 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCBCC-HHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCCCC-HHHHHHHc
Confidence 777777777788889999999999987543345554422 11 1 3678 76788996 6654211 11122111
Q ss_pred HHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 208 RELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 208 ~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
. |..+ . ....|.++||++| +|+.+-+++|.+.+.
T Consensus 189 ~--L~~l--~-R~W~Iq~csA~TG----------eGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 189 H--LNLL--N-HPWLVQDTEAETL----------TGFLNGIEWILEEVE 222 (227)
T ss_dssp T--GGGG--C-SCEEEEEEETTTC----------TTHHHHHHHHTTTTT
T ss_pred C--CcCC--C-CCEEEEEeECCCC----------cCHHHHHHHHHHHHH
Confidence 1 1122 1 3466899999999 999999999987654
No 237
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.89 E-value=2.4e-05 Score=74.59 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=68.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch-------hhhhcCceEEeeE-------E------Eee
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-------EEKKRGITIATAH-------V------EYE 124 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~-------~e~~~g~t~~~~~-------~------~~~ 124 (451)
...|+++|..|+||||++..|.+.....|.............. .-...|+.+-... . ...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~ 183 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHAL 183 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHH
Confidence 3578999999999999999999887665543332221111100 0011132221100 0 001
Q ss_pred eCCeeEEEEecCChHHH-------HHHHHHhc-----ccCCEEEEEEeCCCCCCccHHHHHH-HHHHcCCCeEEEEEeec
Q 013007 125 TAKRHYAHVDCPGHADY-------VKNMITGA-----AQMDGGILVVSAPDGPMPQTKEHIL-LARQVGVPSLVCFLNKV 191 (451)
Q Consensus 125 ~~~~~i~iiDtPG~~~~-------~~~~~~~~-----~~~d~~ilVvda~~g~~~~t~~~l~-~~~~~~ip~iivviNK~ 191 (451)
..+..+.|+||||.... +......+ ..+|.+++|+|+..+ ........ +....++. -+++||+
T Consensus 184 ~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~~i~--gvVlTk~ 259 (306)
T 1vma_A 184 ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVNVT--GIILTKL 259 (306)
T ss_dssp HTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSCCC--EEEEECG
T ss_pred hcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcCCCC--EEEEeCC
Confidence 23567999999994221 22222222 237889999999743 11222222 22235555 3578999
Q ss_pred cCCC
Q 013007 192 DLVE 195 (451)
Q Consensus 192 D~~~ 195 (451)
|...
T Consensus 260 D~~~ 263 (306)
T 1vma_A 260 DGTA 263 (306)
T ss_dssp GGCS
T ss_pred CCcc
Confidence 9764
No 238
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.84 E-value=4.4e-05 Score=75.91 Aligned_cols=127 Identities=20% Similarity=0.206 Sum_probs=71.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCc-hhh------hhcCceEEeeEE-------------Eee
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-PEE------KKRGITIATAHV-------------EYE 124 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~-~~e------~~~g~t~~~~~~-------------~~~ 124 (451)
...|+++|..|+||||++..|.......|............. ..+ ...|+.+-.... .+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~ 177 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999988776655443322111110 001 112332211100 001
Q ss_pred eCCeeEEEEecCChHH----HHHHHH--HhcccCCEEEEEEeCCCCCCccHHHHHHHHH-HcCCCeEEEEEeeccCCC
Q 013007 125 TAKRHYAHVDCPGHAD----YVKNMI--TGAAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 125 ~~~~~i~iiDtPG~~~----~~~~~~--~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~-~~~ip~iivviNK~D~~~ 195 (451)
..++.+.|+||||... ...++. ..+..+|.++||+|+..+ ......+.... ..++. -+++||+|...
T Consensus 178 ~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~~l~i~--GVIlTKlD~~~ 251 (425)
T 2ffh_A 178 LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVT--GLVLTKLDGDA 251 (425)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHTCCC--EEEEESGGGCS
T ss_pred HCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHhcCCce--EEEEeCcCCcc
Confidence 2456799999999532 233322 222358999999999764 22222222222 23443 46899999754
No 239
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.82 E-value=5.2e-05 Score=72.26 Aligned_cols=127 Identities=19% Similarity=0.179 Sum_probs=68.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch-hh------hhcCceEEeeEE------------Ee-e
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP-EE------KKRGITIATAHV------------EY-E 124 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~-~e------~~~g~t~~~~~~------------~~-~ 124 (451)
.-.|+++|+.|+|||||++.|.+.....+.............. .+ +..++.+-.... .+ .
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999876654332222111111110 00 112332211100 00 0
Q ss_pred eCCeeEEEEecCChHH----HHHHH---H----Hhc-ccCCEEEEEEeCCCCCCccHHHHHHHH-HHcCCCeEEEEEeec
Q 013007 125 TAKRHYAHVDCPGHAD----YVKNM---I----TGA-AQMDGGILVVSAPDGPMPQTKEHILLA-RQVGVPSLVCFLNKV 191 (451)
Q Consensus 125 ~~~~~i~iiDtPG~~~----~~~~~---~----~~~-~~~d~~ilVvda~~g~~~~t~~~l~~~-~~~~ip~iivviNK~ 191 (451)
..+..+.++||+|... +..+. . +.+ ..++.+++++|+..+. +..+.+..+ ...++. + +++||.
T Consensus 182 ~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~~t-~-iivTh~ 257 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVGLT-G-VIVTKL 257 (304)
T ss_dssp HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHCCS-E-EEEECT
T ss_pred hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcCCc-E-EEEECC
Confidence 1234578999999432 22211 1 111 2468889999987653 233333333 345776 4 689999
Q ss_pred cCCC
Q 013007 192 DLVE 195 (451)
Q Consensus 192 D~~~ 195 (451)
|...
T Consensus 258 d~~a 261 (304)
T 1rj9_A 258 DGTA 261 (304)
T ss_dssp TSSC
T ss_pred cccc
Confidence 9764
No 240
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.81 E-value=9e-06 Score=75.87 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (451)
.+++++|.+|+|||||+|+|.+... . ......|+|........ +..+.+|||||..+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~------~---------~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA------S---------SVGAQPGITKGIQWFSL---ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-------------------------CCSCEEEC---TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc------c---------ccCCCCCCccceEEEEe---CCCEEEEECCCccc
Confidence 5999999999999999999985411 0 01112245544332222 34689999999654
No 241
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.79 E-value=5.3e-05 Score=79.26 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=39.8
Q ss_pred CeeEEEEecCChHH------------HHHHHHHh-ccc-CCEEEEEEeCCCCCCccH-HHHHHHHHHcCCCeEEEEEeec
Q 013007 127 KRHYAHVDCPGHAD------------YVKNMITG-AAQ-MDGGILVVSAPDGPMPQT-KEHILLARQVGVPSLVCFLNKV 191 (451)
Q Consensus 127 ~~~i~iiDtPG~~~------------~~~~~~~~-~~~-~d~~ilVvda~~g~~~~t-~~~l~~~~~~~ip~iivviNK~ 191 (451)
...+.++|.||... -+..++.. +.. ...++++++++.....+. ...+..+...+.+ .|+|+||.
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~r-tI~VlTK~ 224 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDR-TIGILTKP 224 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCS-EEEEEECG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCc-eEEEecch
Confidence 34689999997322 23344443 343 356777777665544322 2333333344667 56899999
Q ss_pred cCCC
Q 013007 192 DLVE 195 (451)
Q Consensus 192 D~~~ 195 (451)
|+++
T Consensus 225 Dlv~ 228 (608)
T 3szr_A 225 DLVD 228 (608)
T ss_dssp GGSS
T ss_pred hhcC
Confidence 9985
No 242
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.78 E-value=1.8e-05 Score=75.13 Aligned_cols=128 Identities=16% Similarity=0.096 Sum_probs=68.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHh-cCccceeeeeccCCc-hhh------hhcCceEEeeE----E---EeeeCCee
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAE-EGKAKAIAFDEIDKA-PEE------KKRGITIATAH----V---EYETAKRH 129 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~-~~e------~~~g~t~~~~~----~---~~~~~~~~ 129 (451)
...|+++|+.|+||||++..|.+.... .|+............ ..+ ...|+...... . --...+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 358999999999999999999988764 674333222111110 000 01122111000 0 00114567
Q ss_pred EEEEecCChHHH----HHHHHHhcc--cCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 130 YAHVDCPGHADY----VKNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 130 i~iiDtPG~~~~----~~~~~~~~~--~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
+.|+||||.... +.++...+. ..|.+++|+|++.+.. ...+........++. -+++||+|...
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~--giVltk~D~~~ 253 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVN--QYIFTKIDETT 253 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCC--EEEEECTTTCS
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCC--EEEEeCCCccc
Confidence 999999995432 333333333 3677899999876421 111111222223444 35679999765
No 243
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.78 E-value=3e-05 Score=71.34 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=47.8
Q ss_pred CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeecc
Q 013007 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D 192 (451)
..+.+.|||||+.... .....+..+|.+++|++++.............+...+++.+.+++||.+
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 4678999999885443 3344567899999999886543444555566677778877889999999
No 244
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.76 E-value=0.0001 Score=74.78 Aligned_cols=105 Identities=22% Similarity=0.275 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceec
Q 013007 244 ILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKIL 323 (451)
Q Consensus 244 i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v 323 (451)
++++.+++...+++ .....---...|..+|+.+..|.|+..+|..|+++.|..+++...+.. -...+|.||+.+++++
T Consensus 388 ~~~~~~~~~~~~~~-~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~-i~~g~i~sl~~~k~~v 465 (501)
T 1zo1_I 388 IDEVKAAMSGMLSP-ELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVV-IYEGELESLRRFKDDV 465 (501)
T ss_dssp HHHTHHHHTTTSST-TCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCC-CEEEEBCCEEETTEEE
T ss_pred HHHHHHHHHhhcCc-eeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeE-EEEEEEehhcccCccc
Confidence 44555555555543 322222334557789998888999999999999999999999764321 2467999999999999
Q ss_pred cEEecCCeEEEEeccccccCCCCCeEEec
Q 013007 324 DRGEAGDNVGLLLRGLKREDVQRGQVIAK 352 (451)
Q Consensus 324 ~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 352 (451)
+++..|+-|++.+.+. .+++.||+|-.
T Consensus 466 ~e~~~g~ecgi~~~~~--~~~~~gd~~~~ 492 (501)
T 1zo1_I 466 NEVRNGMECGIGVKNY--NDVRTGDVIEV 492 (501)
T ss_dssp SEEETTCCEEEEBCCC--TTCCTTCEEEE
T ss_pred cEECCCCEEEEEEcCc--CCCCCCCEEEE
Confidence 9999999999998865 49999999954
No 245
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.67 E-value=4.2e-05 Score=72.76 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=51.2
Q ss_pred hcccCCEEEEEEeCCCCCCccH--HHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeee
Q 013007 148 GAAQMDGGILVVSAPDGPMPQT--KEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (451)
Q Consensus 148 ~~~~~d~~ilVvda~~g~~~~t--~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~ 225 (451)
.++++|.+++|+|+..+..... .+.+..+...++|. ++|+||+|+.++.+..+.+ +++.+.++..| .++++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~-vivlnK~DL~~~~~~~~~~-~~~~~~y~~~g-----~~v~~ 155 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQP-IICITKMDLIEDQDTEDTI-QAYAEDYRNIG-----YDVYL 155 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEE-EEEEECGGGCCCHHHHHHH-HHHHHHHHHHT-----CCEEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCE-EEEEECCccCchhhhHHHH-HHHHHHHHhCC-----CeEEE
Confidence 4788999999999997665443 33334445678884 5899999999754311112 23344455544 36899
Q ss_pred cccccc
Q 013007 226 GSATSA 231 (451)
Q Consensus 226 ~Sa~~g 231 (451)
+||.++
T Consensus 156 ~sa~~~ 161 (307)
T 1t9h_A 156 TSSKDQ 161 (307)
T ss_dssp CCHHHH
T ss_pred EecCCC
Confidence 999877
No 246
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.59 E-value=0.00055 Score=63.56 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=47.1
Q ss_pred CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccC
Q 013007 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~ 193 (451)
..+.+.|||||+...........+..+|.+++|+.+.......+...+..++..+++.+-+|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 45679999999854321111122336899999998876655666777777777888854489999874
No 247
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.48 E-value=0.00015 Score=68.78 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=68.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchh-------hhhcCceEEeeE-------E------Eee
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPE-------EKKRGITIATAH-------V------EYE 124 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~-------e~~~g~t~~~~~-------~------~~~ 124 (451)
...++++|..|+||||++..|.+.....|............... ....+..+-... . ...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34788999999999999999998776655433322211111000 011122221100 0 001
Q ss_pred eCCeeEEEEecCChH--H--HHHHHHHh--cccCCEEEEEEeCCCCCCccHHHHHHHHH-HcCCCeEEEEEeeccCCC
Q 013007 125 TAKRHYAHVDCPGHA--D--YVKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 125 ~~~~~i~iiDtPG~~--~--~~~~~~~~--~~~~d~~ilVvda~~g~~~~t~~~l~~~~-~~~ip~iivviNK~D~~~ 195 (451)
..++.+.|+||||.. + ....+... ...+|.+++|+|+..+ ....+.+.... ..++. -+++||+|...
T Consensus 178 ~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~i~--givlnk~d~~~ 251 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVT--GLVLTKLDGDA 251 (295)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCC--EEEEECGGGCS
T ss_pred hCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCCCC--EEEEECCCCCc
Confidence 135679999999842 2 22222221 1258999999998753 22223332222 23333 36899999764
No 248
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.48 E-value=0.00085 Score=68.72 Aligned_cols=184 Identities=17% Similarity=0.164 Sum_probs=122.8
Q ss_pred EecCChHHHHHHHHHhccc-CCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEe-eccCCChHHHHHHHHHHHHHH
Q 013007 133 VDCPGHADYVKNMITGAAQ-MDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLN-KVDLVEDEELLELVEMELREL 210 (451)
Q Consensus 133 iDtPG~~~~~~~~~~~~~~-~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviN-K~D~~~~~~~~~~~~~~~~~~ 210 (451)
-|+-|..+-+...+..+.. -.+-+=|+.+ ++-+-|+.-..++...+- +|+.+| |.| .. .+++
T Consensus 346 ~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~--~vG~i~~~Dv~~a~~~~a--~i~~fnv~~~----~~--------~~~~ 409 (537)
T 3izy_P 346 GDVDGSVEAILNVMDTYDASHECELDLVHF--GVGDISENDVNLAETFHG--VIYGFNVNAG----NV--------IQQL 409 (537)
T ss_dssp BCCHHHHHHHHHHHHHCCCCSSCCCCBSCC--CBSCBCHHHHHHHHHHSC--CEEESSCCBC----HH--------HHHH
T ss_pred eCCcchHHHHHHHHHhcCCCCcEEEEEEEe--cCCCCCHHHHHHHHhcCC--eEEEecCCCC----HH--------HHHH
Confidence 4898987777777776654 2233334433 344555556666665543 456777 222 22 2233
Q ss_pred HHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCC---CceEEEEEE
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQG---RGTVATGRV 287 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~---~G~v~~g~v 287 (451)
.+..+. .+..-+-.. .-++++-+++...+++ .....-.-.+.|..+|.++. .|+|+..+|
T Consensus 410 a~~~~v-----~i~~~~iiy-----------~l~~~~~~~~~~~l~~-~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v 472 (537)
T 3izy_P 410 AAKKGV-----KIKLHKIIY-----------RLIEDLQEELSSRLPC-IVEEHPIGEASILATFSITEGKKKVPVAGCRV 472 (537)
T ss_dssp HHHHTC-----CCBCSCSSC-----------CSHHHHHHHHSSSSSC-SSSCCCSSEEEEEEEESSCSSSCCSCEEEEEE
T ss_pred HHHcCC-----eEEEeChHH-----------HHHHHHHHHHHhccCC-ceEEEEEEEEEEcCcEEECCCCccCcEEEEEE
Confidence 333333 333322221 3467777777777664 33333445778899998874 679999999
Q ss_pred EeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEe
Q 013007 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIA 351 (451)
Q Consensus 288 ~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 351 (451)
..|+++.|..+++...+.. -...++.||+.++.++.++..|.-|++.+.+ ...|++.||+|-
T Consensus 473 ~~G~i~~~~~~r~~r~~~~-i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~-~~~~~~~gd~ie 534 (537)
T 3izy_P 473 QKGQIEKQKKFKLIRNGHV-IWKGSLISLKHHKDDTSVVKTGMDCGLSLDE-EKIEFKVGDAII 534 (537)
T ss_dssp CSSEEESSSEEEEESSSSE-EEEEECCCCCCSSCCCSEEETTCEEEEESSS-SCSSCSCCCEEE
T ss_pred EeCeEeeCCeEEEecCCEE-EEEEEEehhcccCcccceEcCCCEEEEEEcC-cccCCCCCCEEE
Confidence 9999999999999874321 2467888999999999999999999999886 135999999984
No 249
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.47 E-value=0.00056 Score=61.26 Aligned_cols=124 Identities=12% Similarity=0.038 Sum_probs=73.3
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCc-eEEeeEEE---e--eeCCeeEEEEecCCh-
Q 013007 67 NVGTI-GHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGI-TIATAHVE---Y--ETAKRHYAHVDCPGH- 138 (451)
Q Consensus 67 ~I~vi-G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~-t~~~~~~~---~--~~~~~~i~iiDtPG~- 138 (451)
.|+++ +..|+||||+.-.|...+...| ........... ....-.+. ........ + -...+.+.++|||+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~-~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~ 79 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNR-SATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARP 79 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTC-HHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCC-CHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCc
Confidence 45565 6689999999999998888777 43332211111 00000000 00000000 0 013467999999986
Q ss_pred HHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHc-CCCeEEEEEeeccCCC
Q 013007 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GVPSLVCFLNKVDLVE 195 (451)
Q Consensus 139 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~-~ip~iivviNK~D~~~ 195 (451)
... .+...+..+|.+++++.++......+...+..+... +.+ +.+++|++|...
T Consensus 80 ~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~ 134 (209)
T 3cwq_A 80 EDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYP 134 (209)
T ss_dssp SSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTT
T ss_pred CcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCcc
Confidence 432 233446679999999988754445556666666664 566 678999999753
No 250
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.45 E-value=0.00035 Score=66.44 Aligned_cols=128 Identities=18% Similarity=0.172 Sum_probs=69.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch------hh-hhcCceEEeeEEE-e-------------
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP------EE-KKRGITIATAHVE-Y------------- 123 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~------~e-~~~g~t~~~~~~~-~------------- 123 (451)
.-.++++|+.|+|||||++.|.+.....+.............. .- ...++.+-..... .
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~ 179 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 179 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHH
Confidence 3488999999999999999999876654322222111111110 00 1123333221111 0
Q ss_pred eeCCeeEEEEecCChHHH----HHHH---HHhc-----ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeec
Q 013007 124 ETAKRHYAHVDCPGHADY----VKNM---ITGA-----AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKV 191 (451)
Q Consensus 124 ~~~~~~i~iiDtPG~~~~----~~~~---~~~~-----~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~ 191 (451)
...+....++||.|...+ ..+. ...+ ..++-.++|+|++.|...... ...+....++. + ++++|+
T Consensus 180 ~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~~g~t-~-iiiThl 256 (302)
T 3b9q_A 180 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGIT-G-LILTKL 256 (302)
T ss_dssp HHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCCC-E-EEEECC
T ss_pred HHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHhcCCC-E-EEEeCC
Confidence 012344679999994332 1111 1111 236777999998776554332 22223345776 4 689999
Q ss_pred cCCC
Q 013007 192 DLVE 195 (451)
Q Consensus 192 D~~~ 195 (451)
|...
T Consensus 257 D~~~ 260 (302)
T 3b9q_A 257 DGSA 260 (302)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 9764
No 251
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.44 E-value=0.00022 Score=66.44 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=66.5
Q ss_pred CChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHH----HH---H-HcCCCeEEEEEee-ccCCChHHHHHHHHHH
Q 013007 136 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL----LA---R-QVGVPSLVCFLNK-VDLVEDEELLELVEME 206 (451)
Q Consensus 136 PG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~----~~---~-~~~ip~iivviNK-~D~~~~~~~~~~~~~~ 206 (451)
.|+..+......++..+|++|+|||+++......++.+. ++ . ..++| ++|+.|| -|+...-. ..++.+.
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Ams-~~EI~e~ 272 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMP-CFYLAHE 272 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBCC-HHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCCC-HHHHHHH
Confidence 567777777778888999999999998754333444332 22 1 14788 6678897 57765211 1112211
Q ss_pred HHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 207 ~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+. +..+ . ....|.++||++| +|+.+-+++|.+.+.
T Consensus 273 L~--L~~l--~-r~W~Iq~csA~tG----------eGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 273 LH--LNLL--N-HPWLVQDTEAETL----------TGFLNGIEWILEEVE 307 (312)
T ss_dssp TT--GGGG--C-SCEEEEEEETTTC----------TTHHHHHHHHHHHSC
T ss_pred cC--CccC--C-CcEEEEecccCCC----------cCHHHHHHHHHHHHH
Confidence 11 1122 1 3456899999999 999999999988765
No 252
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.42 E-value=0.00045 Score=63.99 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=48.2
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
.+.+.|||||+... ......+..+|.+|+|+.+.......+...+..+...+.+.+-+|+|++|...
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 176 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLG 176 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCccc
Confidence 46799999997544 33445567799999999876544445556666666667776778999999654
No 253
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.31 E-value=0.00071 Score=61.51 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=48.9
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
.+.+.++|||+... ......+..+|.+++|+.+.......+...+..+...+.+.+-+|+||+|...
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 35789999988544 33445667899999999876544445566666777777777778999999654
No 254
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.28 E-value=0.00054 Score=66.61 Aligned_cols=128 Identities=18% Similarity=0.173 Sum_probs=68.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch------h-hhhcCceEEeeEEE--e------------
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP------E-EKKRGITIATAHVE--Y------------ 123 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~------~-e~~~g~t~~~~~~~--~------------ 123 (451)
.-.++++|+.|+|||||++.|.+.....+.............. . ....++.+-..... +
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~ 236 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 236 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHH
Confidence 3479999999999999999999876654322222111111110 0 01123333211100 0
Q ss_pred eeCCeeEEEEecCChHHH----HHHH---HH----h-cccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeec
Q 013007 124 ETAKRHYAHVDCPGHADY----VKNM---IT----G-AAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKV 191 (451)
Q Consensus 124 ~~~~~~i~iiDtPG~~~~----~~~~---~~----~-~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~ 191 (451)
...+....++||.|...+ ..+. .. . ...++-++||+|++.|...... ...+....++. + ++++|+
T Consensus 237 ~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~~g~t-~-iiiThl 313 (359)
T 2og2_A 237 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGIT-G-LILTKL 313 (359)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCCC-E-EEEESC
T ss_pred HhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHhcCCe-E-EEEecC
Confidence 012344689999994332 1111 11 1 1246778999998776544332 22233345776 4 689999
Q ss_pred cCCC
Q 013007 192 DLVE 195 (451)
Q Consensus 192 D~~~ 195 (451)
|...
T Consensus 314 D~~~ 317 (359)
T 2og2_A 314 DGSA 317 (359)
T ss_dssp TTCS
T ss_pred cccc
Confidence 9764
No 255
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.28 E-value=0.00047 Score=65.49 Aligned_cols=66 Identities=17% Similarity=0.054 Sum_probs=50.4
Q ss_pred eeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
+.+.|||||+..... ........+|.+++|+.+......+..+.+..+...+++.+-+|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 468999999865432 222234679999999999888788888888888888887555789999964
No 256
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.26 E-value=0.001 Score=61.75 Aligned_cols=65 Identities=14% Similarity=0.183 Sum_probs=43.7
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcC--CCeEEEEEeeccCC
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG--VPSLVCFLNKVDLV 194 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~--ip~iivviNK~D~~ 194 (451)
.+.+.|+|||+.... .....+..+|.+++++.+...-.......+..+...+ .+ +.+|+|+++..
T Consensus 144 ~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~-~~vv~N~~~~~ 210 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLP-IFLIITRFKKN 210 (267)
T ss_dssp TCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCC-EEEEEEEECTT
T ss_pred CCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCC-EEEEEecccCc
Confidence 467999999885432 2344566799999999986543344445556666654 45 56899999543
No 257
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.23 E-value=0.0017 Score=60.55 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=48.0
Q ss_pred eeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
+.+.|||||+..... .....+..+|.+++|+.+.........+.+..+...+.+.+-+|+|++|..
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 568999999864422 112223468999999999876667777777788878888555899999964
No 258
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.22 E-value=0.00037 Score=69.61 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
..+..-|+|+|..++|||||+|+|.+..
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~ 91 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYM 91 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhc
Confidence 4567789999999999999999999764
No 259
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.22 E-value=0.002 Score=60.79 Aligned_cols=67 Identities=10% Similarity=0.004 Sum_probs=44.1
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHH------cCCCeEEEEEeeccCCC
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ------VGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~------~~ip~iivviNK~D~~~ 195 (451)
.+.+.|||||+..... ....+..+|.+++++.+...........+..+.. .+++.+-+|+|+.|...
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 3578999998865432 2233446999999998876544444444444443 25664558899999754
No 260
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.18 E-value=0.00059 Score=64.33 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=51.1
Q ss_pred eeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
+.+.|||||...... ........+|.+|+|+.+.........+.+..+...+.+.+-+|+||+|...
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 468999999865432 1233356699999999988766677777888888888887778999999653
No 261
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.15 E-value=0.00058 Score=64.95 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=41.7
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHH----cCCCeEEEEEeeccC
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ----VGVPSLVCFLNKVDL 193 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~----~~ip~iivviNK~D~ 193 (451)
.+.+.|+|||+..... .+...+..+|.+++|+.+...........+..+.. .+++.+-+|+||++.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 4679999998853311 12234677999999998764333444445555554 345533479999994
No 262
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.12 E-value=0.0013 Score=60.65 Aligned_cols=65 Identities=8% Similarity=0.076 Sum_probs=43.1
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCC--------CeEEEEEeeccC
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV--------PSLVCFLNKVDL 193 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~i--------p~iivviNK~D~ 193 (451)
.+.+.++|||+.... .....+..+|.+++|+++...........+..+...+. ..+-+|+|+.|.
T Consensus 113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 578999999985432 44455668999999998764333344444455444331 346789999984
No 263
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.11 E-value=0.0021 Score=62.25 Aligned_cols=83 Identities=23% Similarity=0.310 Sum_probs=50.3
Q ss_pred cccCCEEEEEEeCCCCCCc--cHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeec
Q 013007 149 AAQMDGGILVVSAPDGPMP--QTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRG 226 (451)
Q Consensus 149 ~~~~d~~ilVvda~~g~~~--~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~ 226 (451)
++++|.+++| |+..+... ...+.+..+...++|. ++|+||+|+.++++ .+.+. +....++..| ++++++
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~-iivlNK~DL~~~~~-~~~~~-~~~~~y~~~G-----~~v~~~ 198 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEP-LIVLNKIDLLDDEG-MDFVN-EQMDIYRNIG-----YRVLMV 198 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEE-EEEEECGGGCCHHH-HHHHH-HHHHHHHTTT-----CCEEEC
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCE-EEEEECccCCCchh-HHHHH-HHHHHHHhCC-----CcEEEE
Confidence 5789999976 45443221 1223334455678885 68999999997543 12122 2333344444 469999
Q ss_pred cccccccCCCcccchhhHHHHHHH
Q 013007 227 SATSALQGKNEEIGKKAILKLMDA 250 (451)
Q Consensus 227 Sa~~g~~~~~~~~~~~~i~~Ll~~ 250 (451)
||.++ .++.+|...
T Consensus 199 Sa~~~----------~gl~~L~~~ 212 (358)
T 2rcn_A 199 SSHTQ----------DGLKPLEEA 212 (358)
T ss_dssp BTTTT----------BTHHHHHHH
T ss_pred ecCCC----------cCHHHHHHh
Confidence 99887 566655543
No 264
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.09 E-value=0.0036 Score=65.01 Aligned_cols=86 Identities=16% Similarity=0.168 Sum_probs=71.0
Q ss_pred CCCeeEEEE--EEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEecccc
Q 013007 263 DKPFLMPIE--DVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLK 340 (451)
Q Consensus 263 ~~p~~~~v~--~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~ 340 (451)
-.|..+.|. .+|+.+. |.|+..+|..|+|+.|..+.+ +.+ ....+|.||+.++++++++..|+-|++.+.+..
T Consensus 461 ~~~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~---~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~ 535 (594)
T 1g7s_A 461 IKPASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDG---ETVGTVESMQDKGENLKSASRGQKVAMAIKDAV 535 (594)
T ss_dssp CCCEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TTS---CEEEEEEEEEETTEEESEEETTCCEEEEEETCC
T ss_pred eeeEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cCC---cEEEEEehhcccCccccccCCCCEEEEEEeCcc
Confidence 345566555 6888776 899999999999999999988 433 267899999999999999999999999988643
Q ss_pred -ccCCCCCeEEecC
Q 013007 341 -REDVQRGQVIAKP 353 (451)
Q Consensus 341 -~~~i~~G~vl~~~ 353 (451)
-.+++.||+|-.-
T Consensus 536 ~~~~~~~~d~~~~~ 549 (594)
T 1g7s_A 536 YGKTIHEGDTLYVD 549 (594)
T ss_dssp BTTTBCTTCEEEEC
T ss_pred cCCCCCCCCEEEEE
Confidence 2689999999643
No 265
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.91 E-value=0.0065 Score=55.96 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=42.0
Q ss_pred CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHH------cCCCeEEEEEeeccCCC
Q 013007 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ------VGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~------~~ip~iivviNK~D~~~ 195 (451)
..+.+.|||||+..... ....+..+|.+++++.+...........+..+.. .+++.+-+|+|+.|...
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 45679999999854432 2344567999999999865333333333333332 24553347899998654
No 266
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.84 E-value=0.0011 Score=60.64 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=47.4
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcC--CCeEEEEEeeccCCC
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG--VPSLVCFLNKVDLVE 195 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~--ip~iivviNK~D~~~ 195 (451)
.+.+.|+|||+.... .....+..+|.+++++.+.......+...+..+...+ .+.+-+|+|++|...
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 457899999885432 3344577899999999876544455566667777666 445778999999654
No 267
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.82 E-value=0.0036 Score=57.98 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=39.4
Q ss_pred CeeEEEEecCChHH---HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHc----CCCeEEEEEeeccCC
Q 013007 127 KRHYAHVDCPGHAD---YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV----GVPSLVCFLNKVDLV 194 (451)
Q Consensus 127 ~~~i~iiDtPG~~~---~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~----~ip~iivviNK~D~~ 194 (451)
.+.+.||||||... +... .....+|.+++++.+...........+..+... +++.+-+|+|+.+..
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~--~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~ 187 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMP--IREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA 187 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHH--HHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS
T ss_pred CCCEEEEeCCchhhhhhhhhh--hhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc
Confidence 46799999998432 1111 112469999999987643223333334444432 556456889999753
No 268
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.80 E-value=0.0015 Score=61.46 Aligned_cols=65 Identities=11% Similarity=-0.047 Sum_probs=38.4
Q ss_pred CeeEEEEecCChHH---HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHH----cCCCeEEEEEeeccC
Q 013007 127 KRHYAHVDCPGHAD---YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ----VGVPSLVCFLNKVDL 193 (451)
Q Consensus 127 ~~~i~iiDtPG~~~---~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~----~~ip~iivviNK~D~ 193 (451)
.+.+.||||||... +... .....+|.+++++.+...........+..+.. .+.+.+-+|+|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~--~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMP--IRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHH--HHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhh--hhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 56799999998531 1111 11256999999998754222223333333333 256645578999874
No 269
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.66 E-value=0.044 Score=52.92 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=35.1
Q ss_pred CCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 152 MDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 152 ~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
.+.+++|.-+..-....++..+..+...++|..-+|+|++...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 4678888877665567778888899999999878899999865
No 270
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.43 E-value=0.01 Score=55.68 Aligned_cols=94 Identities=13% Similarity=0.128 Sum_probs=53.8
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCccceeeeecc-CC-----chhhh------hcCceEEe-eEEEe-e-------
Q 013007 67 NVGTI-GHVDHGKTTLTAAITKVLAEEGKAKAIAFDEI-DK-----APEEK------KRGITIAT-AHVEY-E------- 124 (451)
Q Consensus 67 ~I~vi-G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~-d~-----~~~e~------~~g~t~~~-~~~~~-~------- 124 (451)
.|+|. +..|+||||+.-.|...+...|+......... .. ...+. ........ ..+.. .
T Consensus 6 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~~~ 85 (286)
T 2xj4_A 6 VIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNLSDNDVALAERP 85 (286)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCCCCEEECSSSCHHHHTTSC
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCCCchheEeeCCCCCCcChh
Confidence 56666 45789999999999888777776544332211 00 00000 00000000 00000 0
Q ss_pred ---------------eCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCC
Q 013007 125 ---------------TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAP 162 (451)
Q Consensus 125 ---------------~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~ 162 (451)
...+.+.|||||+.. .......+..+|.+|+++.+.
T Consensus 86 ~~~~~~~l~~~l~~l~~~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 86 EEEQVAGFEAAFARAMAECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred hhhhHHHHHHHHHHHHhcCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 023578999999864 234455677899999999876
No 271
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.34 E-value=0.12 Score=49.30 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=34.1
Q ss_pred CEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 153 DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 153 d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
+.+++|.-+..-....++..+..+...|++..-+|+|++.-.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 488888877655557778888889999999878899999865
No 272
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.08 E-value=0.022 Score=59.22 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=32.9
Q ss_pred CEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 153 DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 153 d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
+.+++|+.+.......+...+..+...+++..-+|+|+++-.
T Consensus 199 t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 199 TRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 368899987765556777778888888988777889999854
No 273
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=95.96 E-value=0.18 Score=45.91 Aligned_cols=65 Identities=9% Similarity=-0.032 Sum_probs=43.3
Q ss_pred CeeEEEEecCChHH-------HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 127 KRHYAHVDCPGHAD-------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 127 ~~~i~iiDtPG~~~-------~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
...+.+||.+|.-. ....+... ...-+|+|+++..+...++...+..+...+++ .=+|+|+++-.
T Consensus 131 ~~D~vlIEGagGl~~pl~~~~~~adlA~~--l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~ 202 (242)
T 3qxc_A 131 TYDLVIVEGAGGLCVPITLEENMLDFALK--LKAKMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNN 202 (242)
T ss_dssp TCSEEEEECCSCTTCBSSSSCBHHHHHHH--HTCEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTC
T ss_pred cCCEEEEECCCCccccccccchHHHHHHH--cCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCc
Confidence 45689999987211 11122111 13347889998877556666666777778999 88899999854
No 274
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.95 E-value=0.0019 Score=61.38 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..++++|++|+|||||+|.|.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 48999999999999999999854
No 275
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=95.95 E-value=0.1 Score=49.82 Aligned_cols=41 Identities=12% Similarity=-0.019 Sum_probs=32.7
Q ss_pred CEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccC
Q 013007 153 DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (451)
Q Consensus 153 d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~ 193 (451)
+.+++|..+.......+...+..+...|++..-+|+|++..
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~ 262 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLL 262 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 47888888765555677888888888999977789999983
No 276
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.85 E-value=0.0052 Score=53.39 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
++++++|+.|+|||||++.|.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999775
No 277
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=95.71 E-value=0.12 Score=49.94 Aligned_cols=42 Identities=10% Similarity=-0.059 Sum_probs=34.4
Q ss_pred cCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeecc
Q 013007 151 QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (451)
Q Consensus 151 ~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D 192 (451)
.+|.+++|+.+.......+...+..+...+++..-+|+|++.
T Consensus 234 ~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 578899999876555567777888888899998888999998
No 278
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.64 E-value=0.23 Score=45.52 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCc
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~ 94 (451)
..|+++|.+|+||||+.+.|...+...|.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~ 33 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNI 33 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCC
Confidence 47999999999999999999876544443
No 279
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.60 E-value=0.0049 Score=62.30 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=56.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH--H
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY--V 142 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~--~ 142 (451)
..+|.++|.+|+||||+.+.|.......+...... ..|....+.. |. .....++|..|.+.+ .
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~--~~d~~r~~~~-g~------------~~~~~ifd~~g~~~~r~r 103 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREF--NVGQYRRDMV-KT------------YKSFEFFLPDNEEGLKIR 103 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--EHHHHHHHHH-CS------------CCCGGGGCTTCHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEE--ecchhhhhhc-cC------------CCcccccCCCCHHHHHHH
Confidence 46899999999999999999986644222111100 0000001100 10 112356888887332 2
Q ss_pred HHH--------HHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCC
Q 013007 143 KNM--------ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVP 182 (451)
Q Consensus 143 ~~~--------~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip 182 (451)
... ...+...++.++|+|+++.....-...+..++..+.+
T Consensus 104 e~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~ 151 (469)
T 1bif_A 104 KQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYK 151 (469)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCc
Confidence 221 3334446788999999875333333344556666665
No 280
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.55 E-value=0.0061 Score=53.89 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
..++++|++|+|||||++.|.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998764
No 281
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.54 E-value=0.0089 Score=56.63 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAIT 86 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~ 86 (451)
..++++|++|+|||||+|.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999998
No 282
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=95.46 E-value=0.051 Score=48.46 Aligned_cols=68 Identities=16% Similarity=0.049 Sum_probs=40.6
Q ss_pred CeeEEEEecCChHH--HH--HHHHHhccc-CCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 127 KRHYAHVDCPGHAD--YV--KNMITGAAQ-MDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 127 ~~~i~iiDtPG~~~--~~--~~~~~~~~~-~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
.+.+.||||||... .. ......+.. .+.+++|+.+..+...++...++.++..+++.+-+|+|++|..
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 56799999997432 10 000111111 2347888887554344555566666667888555789999964
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.43 E-value=0.0078 Score=52.22 Aligned_cols=24 Identities=8% Similarity=0.160 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
..++++|++|+|||||++.|.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 378999999999999999998764
No 284
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.35 E-value=0.03 Score=55.70 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++..-|+|+|..++|||+|+|.|++..
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~ 91 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYM 91 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHh
Confidence 4577899999999999999999887543
No 285
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.28 E-value=0.0098 Score=50.56 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=24.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCc
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~ 94 (451)
--.++++|+.|+|||||++.|.+.....|.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~ 62 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGIGHQGN 62 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCCCe
Confidence 347999999999999999999987633343
No 286
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.23 E-value=0.013 Score=52.03 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=24.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhc
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEE 92 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~ 92 (451)
+...|+++|++|+|||||++.|.+.....
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 44689999999999999999998876543
No 287
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.20 E-value=0.01 Score=52.77 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.++++|+.|+|||||++.|.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 378999999999999999999765
No 288
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.15 E-value=0.011 Score=51.57 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
.++++|+.|+|||||++.|.+...
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999997654
No 289
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.12 E-value=0.011 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
..++++|+.|+|||||++.|.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 378999999999999999998763
No 290
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.07 E-value=0.012 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|+++|++|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999864
No 291
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.99 E-value=0.18 Score=52.21 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=33.9
Q ss_pred cCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 151 QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 151 ~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
.+|.+++|+.+.......+...+..+...|++..-+|+|+++-.
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 45888999876655556667777888888988777899999864
No 292
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.97 E-value=0.3 Score=46.68 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=32.3
Q ss_pred CEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccC
Q 013007 153 DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (451)
Q Consensus 153 d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~ 193 (451)
+.+++|..+..-....+++.+..+...|++..-+|+|++..
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~ 263 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLF 263 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcC
Confidence 36777776655455677888888999999988899999874
No 293
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.95 E-value=0.095 Score=47.07 Aligned_cols=34 Identities=15% Similarity=-0.114 Sum_probs=26.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCcccee
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAI 98 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~ 98 (451)
-.-+.+.|++|+||||++-.+.......|.....
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli 45 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLV 45 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 3467889999999999988887776666655443
No 294
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.94 E-value=0.013 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
..++++|+.|+|||||++.|.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999999865
No 295
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.82 E-value=0.14 Score=49.41 Aligned_cols=28 Identities=29% Similarity=0.270 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
..+.+.|++|+|||||+.++.......|
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~g 89 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMG 89 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4789999999999999999987655443
No 296
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.79 E-value=0.017 Score=51.21 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
...|+++|+.|+|||||++.|.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998754
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.78 E-value=0.015 Score=52.25 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
..++++|+.|+|||||++.|.+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4889999999999999999998654
No 298
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.75 E-value=0.026 Score=48.70 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
..++++|..|+|||||+++|.+.....|
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g 34 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG 34 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC
Confidence 4789999999999999999997755444
No 299
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.74 E-value=0.019 Score=50.34 Aligned_cols=27 Identities=37% Similarity=0.399 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
.++++|+.|+|||||++.|.+...+.|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 589999999999999999998776545
No 300
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.74 E-value=0.029 Score=48.12 Aligned_cols=29 Identities=28% Similarity=0.228 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCc
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~ 94 (451)
..++++|..|+|||||+.+|...+...|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~ 33 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGW 33 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCC
Confidence 47899999999999999999987666554
No 301
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.70 E-value=0.12 Score=49.84 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCc
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~ 94 (451)
..+.+.|++|+|||||+..+.......|.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~ 90 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGG 90 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 47899999999999999999866555443
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.63 E-value=0.021 Score=50.25 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
...|+++|.+|+|||||++.|.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998654
No 303
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.59 E-value=0.39 Score=46.18 Aligned_cols=42 Identities=12% Similarity=-0.059 Sum_probs=33.3
Q ss_pred CEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 153 DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 153 d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
+.+++|..+..-....+...+..+...|++..-+|+|++.-.
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~ 273 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFA 273 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 467888877655556778888889999999878899999864
No 304
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.54 E-value=0.02 Score=50.44 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
...|+++|++|+|||||++.|.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998653
No 305
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.53 E-value=0.022 Score=50.80 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCcc
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKA 95 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~ 95 (451)
-.++++|+.|+|||||++.|.+...+.|..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl~p~~G~I 52 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQALQSKQV 52 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcCCee
Confidence 378999999999999999999873344554
No 306
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.53 E-value=0.018 Score=49.48 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAIT 86 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~ 86 (451)
.++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 78999999999999999754
No 307
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.52 E-value=0.016 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++++|+.|+|||||++.|.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7899999999999999999864
No 308
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.43 E-value=0.023 Score=49.93 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
..|+++|++|+|||||++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999998764
No 309
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.43 E-value=0.018 Score=55.66 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..++++|++|+|||||+|.|.+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999999965
No 310
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.42 E-value=0.033 Score=49.00 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=25.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCc
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~ 94 (451)
...|+++|.+|+|||||.+.|.+.+...|.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~ 54 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGK 54 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 458999999999999999999887664454
No 311
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.42 E-value=0.017 Score=49.75 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
.++++|.+|+|||||++.|.+.....|
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g 30 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERG 30 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 789999999999999999998765543
No 312
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.38 E-value=0.28 Score=47.51 Aligned_cols=29 Identities=31% Similarity=0.275 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCc
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~ 94 (451)
..+.+.|.+++|||||+-.+.......|.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~ 103 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGG 103 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCC
Confidence 36788999999999999998766554443
No 313
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.37 E-value=0.017 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++++|+.|+|||||++.|.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999865
No 314
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.36 E-value=0.028 Score=48.07 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
...|+++|.+|+||||+.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 357999999999999999999765
No 315
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.36 E-value=0.022 Score=52.02 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.++++|+.|+|||||++.|.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998653
No 316
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.34 E-value=0.021 Score=48.68 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|+++|.+|+|||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999764
No 317
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.31 E-value=0.026 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
...|+++|++|+|||||++.|.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3479999999999999999998654
No 318
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.28 E-value=0.027 Score=53.19 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.-.++++|++|+|||||++.|.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3589999999999999999999876
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.21 E-value=0.027 Score=48.91 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITK 87 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~ 87 (451)
.++++|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999975
No 320
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.14 E-value=0.022 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++++|+.|+|||||++.|.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999854
No 321
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.11 E-value=0.022 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++++|+.|+|||||++.|.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999865
No 322
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.09 E-value=0.046 Score=47.34 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=25.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
+...|+++|.+|+||||+.+.|.......|
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~ 41 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEG 41 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 346899999999999999999987765444
No 323
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.07 E-value=0.027 Score=51.72 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++++|+.|+|||||++.|.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999964
No 324
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.07 E-value=0.023 Score=52.46 Aligned_cols=23 Identities=39% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998653
No 325
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.06 E-value=0.029 Score=51.81 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=23.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHh
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAE 91 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~ 91 (451)
+.-.++++|+.|+|||||++.|.+....
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 3458999999999999999999987543
No 326
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.06 E-value=0.033 Score=47.32 Aligned_cols=22 Identities=23% Similarity=0.028 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.|+++|.+|+||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999754
No 327
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.05 E-value=0.023 Score=51.95 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.++++|+.|+|||||++.|.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998754
No 328
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.04 E-value=0.022 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.314 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++++|+.|+|||||++.|.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 329
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=94.03 E-value=0.81 Score=41.74 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=72.2
Q ss_pred eEEEEEcC-CCCcHHHHHHHHHHHHHhcCccceeeee----c----cCCchhhhhcCceEEeeEEEee------------
Q 013007 66 VNVGTIGH-VDHGKTTLTAAITKVLAEEGKAKAIAFD----E----IDKAPEEKKRGITIATAHVEYE------------ 124 (451)
Q Consensus 66 ~~I~viG~-~~~GKSTLi~~L~~~~~~~g~~~~~~~~----~----~d~~~~e~~~g~t~~~~~~~~~------------ 124 (451)
..+.|.|- +|+|||++.-.|.....+.|........ . .|..-.....|.......+.|.
T Consensus 27 ~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa~~~ 106 (251)
T 3fgn_A 27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQLAGLARYPQPMAPAAAAEHA 106 (251)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCCCEEEEEEECSSSSCHHHHHHHT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCCCCCCCCeeECCCCChHHHHHHc
Confidence 46777776 6999999999999888877765332211 0 0110011111221111111110
Q ss_pred -----------------eCCeeEEEEecCChH-----H---HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHc
Q 013007 125 -----------------TAKRHYAHVDCPGHA-----D---YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV 179 (451)
Q Consensus 125 -----------------~~~~~i~iiDtPG~~-----~---~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~ 179 (451)
.....+.+||.||-- + ....... ....-+|+|+|+..+...++...+..+...
T Consensus 107 ~~~~~~~~~i~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~~adla~--~l~~pVILV~~~~~g~i~~~~lt~~~l~~~ 184 (251)
T 3fgn_A 107 GMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGVTLRDVAV--DVAAAALVVVTADLGTLNHTKLTLEALAAQ 184 (251)
T ss_dssp TCCCCCHHHHHHHHHTTCCTTCEEEEECSSSTTCEEETTTEEHHHHHH--HTTCEEEEEECSSTTHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHhcCCEEEEECCCCCcCCcCcccchHHHHHH--HcCCCEEEEEcCCCccHHHHHHHHHHHHhC
Confidence 124578999998721 1 1112211 124568899999876555666666667777
Q ss_pred CCCeEEEEEeecc
Q 013007 180 GVPSLVCFLNKVD 192 (451)
Q Consensus 180 ~ip~iivviNK~D 192 (451)
+++..=+++||+.
T Consensus 185 g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 185 QVSCAGLVIGSWP 197 (251)
T ss_dssp TCCEEEEEEEEEC
T ss_pred CCCEEEEEEECCC
Confidence 8886678899985
No 330
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=94.02 E-value=0.82 Score=41.00 Aligned_cols=67 Identities=15% Similarity=0.016 Sum_probs=43.9
Q ss_pred CCeeEEEEecCChH-----H--HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 126 AKRHYAHVDCPGHA-----D--YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 126 ~~~~i~iiDtPG~~-----~--~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
..+.+.+||+||.- + ........ ...-+|+|+++..+-..++...+..+...+++..=+++|++|-.
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~--l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKA--LQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHH--HTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHH--cCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 35679999998721 1 11111111 12448899999876666666666777788888666889999753
No 331
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.01 E-value=0.024 Score=52.00 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998653
No 332
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.01 E-value=0.023 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++++|+.|+|||||++.|.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999999864
No 333
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.99 E-value=0.2 Score=48.41 Aligned_cols=29 Identities=38% Similarity=0.402 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCc
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~ 94 (451)
..+.+.|.+|+|||||+-.|.......|.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~ 92 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGK 92 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 47899999999999999999866555443
No 334
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.99 E-value=0.024 Score=52.49 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++++|+.|+|||||++.|.+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999865
No 335
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.98 E-value=0.023 Score=52.75 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.++++|+.|+|||||++.|.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 378999999999999999998653
No 336
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.97 E-value=0.63 Score=43.97 Aligned_cols=26 Identities=8% Similarity=0.006 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEE 92 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~ 92 (451)
.+.+.|++|+|||||+-.+.......
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~ 55 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ 55 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999988887655543
No 337
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.96 E-value=0.03 Score=47.55 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAI 85 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L 85 (451)
+.|+++|.+|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 338
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.91 E-value=0.031 Score=49.13 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITK 87 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~ 87 (451)
.+|+++|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999986
No 339
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.91 E-value=0.025 Score=51.53 Aligned_cols=23 Identities=39% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998653
No 340
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.90 E-value=0.035 Score=52.76 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=24.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHh
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAE 91 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~ 91 (451)
++...|+++|+.|+|||||++.|.+....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 44568999999999999999999887643
No 341
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.87 E-value=0.026 Score=52.17 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
.++++|+.|+|||||++.|.+...
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 789999999999999999987643
No 342
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.86 E-value=0.031 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++++|+.|+|||||++.|.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999964
No 343
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.84 E-value=0.026 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++++|+.|+|||||++.|.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 7899999999999999999865
No 344
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.79 E-value=0.027 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999998664
No 345
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.78 E-value=0.035 Score=48.98 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
..|+++|.+|+|||||++.|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999998654
No 346
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.78 E-value=0.027 Score=51.86 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++++|+.|+|||||++.|.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999865
No 347
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.77 E-value=0.047 Score=47.22 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
..|++.|.+|+||||+.+.|.......|
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 29 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQG 29 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3699999999999999999987655433
No 348
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.77 E-value=0.036 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|+++|.+|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 349
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.75 E-value=0.042 Score=47.29 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
...++++|++|+|||||+.++.+...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999987754
No 350
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.68 E-value=0.042 Score=48.04 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.|+++|.+|+||||+.+.|.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999865
No 351
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.68 E-value=0.038 Score=48.69 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITK 87 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~ 87 (451)
+.|+++|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 352
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.68 E-value=0.042 Score=48.49 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
+...|+++|.+|+|||||.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999864
No 353
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.65 E-value=0.029 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++++|+.|+|||||++.|.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999865
No 354
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.65 E-value=0.041 Score=50.12 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
..|+++|+.|+|||||++.|.+..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998754
No 355
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.64 E-value=0.03 Score=52.08 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998653
No 356
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.64 E-value=0.037 Score=50.47 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITK 87 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~ 87 (451)
..|+++|++|+|||||++.|..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999983
No 357
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.63 E-value=0.037 Score=48.65 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
..|+++|.+|+||||+.+.|.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997653
No 358
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.62 E-value=0.03 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++++|+.|+|||||++.|.+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999865
No 359
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.62 E-value=0.04 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-|+++|++|+|||||+++|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38899999999999999998653
No 360
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.61 E-value=0.053 Score=47.75 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHh
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAE 91 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~ 91 (451)
...|+++|..|+|||||++.|.+....
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 458999999999999999999876543
No 361
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.60 E-value=0.041 Score=46.12 Aligned_cols=27 Identities=22% Similarity=0.115 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHh
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAE 91 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~ 91 (451)
...++++|++|+|||||++.+.+....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999877554
No 362
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.54 E-value=0.046 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
++|+++|.+|+||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999643
No 363
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.54 E-value=0.032 Score=51.32 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++++|+.|+|||||++.|.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 364
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.51 E-value=0.047 Score=46.69 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITK 87 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~ 87 (451)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 365
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.48 E-value=0.049 Score=47.81 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
..|+++|.+|+||||+...|.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 489999999999999999997653
No 366
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.46 E-value=0.055 Score=46.76 Aligned_cols=28 Identities=29% Similarity=0.215 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
..|++.|.+|+||||+.+.|.......|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4799999999999999999987654333
No 367
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.39 E-value=0.027 Score=50.79 Aligned_cols=24 Identities=25% Similarity=0.151 Sum_probs=15.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-HHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAIT-KVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~-~~~ 89 (451)
..++++|+.|+|||||++.|. +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998 654
No 368
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.36 E-value=0.066 Score=48.43 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
-.++++|+.|+|||||++.|...
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 37899999999999999999853
No 369
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.36 E-value=0.033 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..++++|++|+|||||+|.|.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 47899999999999999999854
No 370
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.34 E-value=0.028 Score=53.21 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.++++|+.|+|||||++.|.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 478999999999999999998653
No 371
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.33 E-value=0.05 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
++|+++|.+|+||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999643
No 372
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.28 E-value=0.064 Score=46.24 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|+++|.+|+||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.27 E-value=0.064 Score=46.44 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
.|++.|.+|+||||+.+.|.......|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKG 28 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 689999999999999999987654334
No 374
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.26 E-value=0.055 Score=51.50 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
..+.|+++|++|+|||||++.|.+...
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999976654
No 375
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.23 E-value=0.056 Score=50.72 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=25.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhc
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEE 92 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~ 92 (451)
+....|+++|.+|+|||||++.|.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 345689999999999999999998766543
No 376
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.21 E-value=0.059 Score=52.15 Aligned_cols=27 Identities=30% Similarity=0.231 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhc
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEE 92 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~ 92 (451)
-.++++|+.|+|||||++.|.+.....
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 489999999999999999999876554
No 377
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.20 E-value=0.046 Score=53.12 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
..+++++|+.|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 378
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.19 E-value=0.045 Score=48.89 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
-.++++|++|+|||||++.|.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
No 379
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.17 E-value=0.039 Score=51.00 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998765
No 380
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.17 E-value=0.038 Score=54.15 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
.++++|+.|+|||||++.|.+...
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 789999999999999999997654
No 381
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.14 E-value=0.06 Score=46.41 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.+|+++|.+|+||||+...|...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999754
No 382
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.13 E-value=0.043 Score=53.15 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 68999999999999999998653
No 383
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.11 E-value=0.17 Score=45.20 Aligned_cols=30 Identities=23% Similarity=0.095 Sum_probs=25.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
....+.+.|++|+|||||+..+.......+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~ 80 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELE 80 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 456899999999999999999987765543
No 384
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.11 E-value=0.069 Score=46.40 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCc
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~ 94 (451)
.|++.|..|+||||+++.|.......|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~ 29 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGK 29 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 5899999999999999999876544443
No 385
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.09 E-value=0.068 Score=46.99 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
..|++.|.+|+||||+.+.|.......|
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5899999999999999999987654433
No 386
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.06 E-value=0.19 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITK 87 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~ 87 (451)
.-|+++|.+|+||||+...|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999874
No 387
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.03 E-value=0.067 Score=46.30 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|.++|.+|+||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 388
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.01 E-value=0.041 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
-.++++|+.|+|||||++.|.+.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 37899999999999999999865
No 389
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.97 E-value=0.073 Score=46.96 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=23.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
...|++.|.+|+||||+.+.|.......+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35899999999999999999987654433
No 390
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.96 E-value=0.2 Score=44.89 Aligned_cols=33 Identities=15% Similarity=-0.030 Sum_probs=28.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccc
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAK 96 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~ 96 (451)
..++|.+.|.+|+||||++-++.......|...
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V 37 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRV 37 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCE
Confidence 357999999999999999999888877777654
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.95 E-value=0.031 Score=49.44 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEE 92 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~ 92 (451)
.|++.|.+|+||||+++.|.......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999998765443
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.88 E-value=0.086 Score=45.23 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
...|+++|..|+||||+.+.|.+.+...|
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g 33 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHG 33 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 35789999999999999999987654433
No 393
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.86 E-value=0.073 Score=51.88 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=24.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhc
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEE 92 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~ 92 (451)
+.-.++++|++|+|||||++.|.+.....
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 34579999999999999999999876543
No 394
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.85 E-value=0.065 Score=50.73 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
....|+++|+.|+|||||++.|.+...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999987653
No 395
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.84 E-value=0.068 Score=47.62 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.++|+++|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999754
No 396
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.83 E-value=0.068 Score=45.70 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|.++|.+|+||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999865
No 397
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.82 E-value=0.045 Score=53.12 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.-.++++|+.|+|||||++.|.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3589999999999999999998754
No 398
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.75 E-value=0.041 Score=53.68 Aligned_cols=34 Identities=24% Similarity=0.049 Sum_probs=26.2
Q ss_pred ceeEEEEEc-CCCCcHHHHHHHHHHHHHhcCccce
Q 013007 64 LHVNVGTIG-HVDHGKTTLTAAITKVLAEEGKAKA 97 (451)
Q Consensus 64 ~~~~I~viG-~~~~GKSTLi~~L~~~~~~~g~~~~ 97 (451)
....|++.+ ..|+||||+.-.|...+...|+...
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVl 176 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVF 176 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEE
Confidence 446788886 7899999999999877776665443
No 399
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.73 E-value=0.081 Score=46.60 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHh
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAE 91 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~ 91 (451)
...|++.|.+|+||||+.+.|......
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999866543
No 400
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.73 E-value=0.051 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68999999999999999998754
No 401
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.72 E-value=0.076 Score=44.89 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
+|++.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999754
No 402
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.71 E-value=0.078 Score=45.85 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|+++|.+|+||||+.+.|...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998754
No 403
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.68 E-value=0.072 Score=46.53 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
...|+++|.+|+||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 358999999999999999999753
No 404
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.65 E-value=0.08 Score=45.78 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.+|+++|.+|+||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999754
No 405
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.57 E-value=0.058 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999998764
No 406
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.54 E-value=0.042 Score=52.62 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.++++|+.|+|||||++.|.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998764
No 407
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.51 E-value=0.059 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 68999999999999999998764
No 408
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.47 E-value=0.078 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
+|+++|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999754
No 409
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.42 E-value=0.061 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 68999999999999999998764
No 410
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.39 E-value=0.062 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 78999999999999999998764
No 411
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.38 E-value=0.083 Score=45.82 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|+++|.+|+||||+.+.|...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999754
No 412
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.35 E-value=0.077 Score=45.34 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
+|+++|.+|+||||+...|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
No 413
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.34 E-value=0.074 Score=48.72 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITK 87 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~ 87 (451)
...|+++|+.|+||||+++.|..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999973
No 414
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.32 E-value=0.084 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
..|++.|.+|+||||+.+.|....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998653
No 415
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.31 E-value=0.089 Score=45.14 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|+++|.+|+||||+...|...
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 416
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.29 E-value=0.065 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 68999999999999999998764
No 417
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.28 E-value=0.08 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|+++|.+|+||||+.+.|...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999743
No 418
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.23 E-value=0.59 Score=40.68 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
.+.+.|++|+|||||+..+.....
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 599999999999999999986643
No 419
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.23 E-value=0.067 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 78999999999999999998764
No 420
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.22 E-value=0.094 Score=47.70 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
+.++|+++|.+|+||||+...|...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999754
No 421
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.19 E-value=0.089 Score=46.10 Aligned_cols=26 Identities=23% Similarity=0.509 Sum_probs=22.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..+..|+++|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 34689999999999999999998753
No 422
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.15 E-value=0.11 Score=45.56 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.+.|+++|.+|+||||+.+.|...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999754
No 423
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.13 E-value=0.13 Score=49.18 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCc
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~ 94 (451)
--+.+.|.+|+|||||+-.+.......|.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~ 75 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDR 75 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 36889999999999999998766555443
No 424
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.05 E-value=0.057 Score=52.07 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 78999999999999999998764
No 425
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.02 E-value=0.1 Score=46.49 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhc
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEE 92 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~ 92 (451)
-.++++|++|+|||||+..|.+.....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~ 50 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD 50 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 378999999999999999998665443
No 426
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.00 E-value=0.092 Score=51.94 Aligned_cols=28 Identities=25% Similarity=0.153 Sum_probs=23.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
.+.-.++++|+.|+|||||+++|++...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3445799999999999999999997653
No 427
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.95 E-value=0.061 Score=54.74 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.+++++|++|||||||+++|++..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 469999999999999999998653
No 428
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.94 E-value=0.12 Score=45.28 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|+++|.+|+||||+.+.|...
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999754
No 429
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.94 E-value=0.1 Score=46.31 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
++|.++|++||||+|....|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999754
No 430
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.88 E-value=0.086 Score=50.14 Aligned_cols=24 Identities=29% Similarity=0.206 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
...++++|..|||||||++.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 347899999999999999999975
No 431
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.81 E-value=0.11 Score=45.27 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|+++|.+|+||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999754
No 432
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.65 E-value=0.12 Score=43.69 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
-+|++.|.+|+||||+...|...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999998654
No 433
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.63 E-value=0.12 Score=46.05 Aligned_cols=23 Identities=35% Similarity=0.261 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
++|+++|.+|+||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999754
No 434
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.59 E-value=0.12 Score=46.29 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.|++.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 435
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.59 E-value=0.11 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITK 87 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~ 87 (451)
+.|++.|..||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999964
No 436
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.56 E-value=0.14 Score=44.09 Aligned_cols=23 Identities=30% Similarity=0.218 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|+++|.+|+||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 437
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.51 E-value=0.056 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999998754
No 438
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.48 E-value=0.097 Score=44.94 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
..+++|+.|+|||||+++|...+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999997654
No 439
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.44 E-value=0.08 Score=47.67 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
-..|++.|..|+|||||++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999764
No 440
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.44 E-value=0.11 Score=43.98 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.|++.|.+|+||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
No 441
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.31 E-value=0.11 Score=46.35 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|+++|.+|+||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 442
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.28 E-value=0.11 Score=44.61 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.|+++|.+|+||||+...|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
No 443
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.20 E-value=0.12 Score=47.21 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.+.|++.|.+|+||||+.+.|...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 444
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.19 E-value=0.17 Score=44.69 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH-hcC
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLA-EEG 93 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~-~~g 93 (451)
...|+++|.+|+||||+.+.|.+... ..|
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 45899999999999999999987654 344
No 445
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.18 E-value=0.13 Score=48.02 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
...|.++|.+|+||||+...|...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999754
No 446
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.14 E-value=0.14 Score=46.92 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.|+++|.+|+|||||...|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999754
No 447
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.07 E-value=0.47 Score=45.93 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
-.+++|+.|+|||||+++|+..+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 356999999999999999986654
No 448
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.01 E-value=0.1 Score=52.33 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
--.++++|+.|+|||||++.|.+...
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCccc
Confidence 35899999999999999999988654
No 449
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.92 E-value=0.11 Score=44.58 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=16.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|.+.|.+|+||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999754
No 450
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.90 E-value=0.49 Score=44.82 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.+.+.|++|+|||||..++...
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4689999999999999998754
No 451
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.86 E-value=0.12 Score=47.32 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
...|.++|.+|+||||+...|....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999997653
No 452
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.84 E-value=1 Score=38.82 Aligned_cols=29 Identities=21% Similarity=0.119 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCcc
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKA 95 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~ 95 (451)
-+.+.|+.|+||||++-.+.......|..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~ 33 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKK 33 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 57899999999999987776655555543
No 453
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.84 E-value=0.13 Score=47.66 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
-++++|++|+|||||+++|.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4999999999999999999865
No 454
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.84 E-value=0.15 Score=47.68 Aligned_cols=27 Identities=11% Similarity=0.021 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhc
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEE 92 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~ 92 (451)
--++++|++|+|||||+..|.+.....
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 378999999999999999998876544
No 455
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.83 E-value=0.13 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
-+++++|+.|+|||||++.|.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999876
No 456
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.75 E-value=0.18 Score=45.41 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=23.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHh
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAE 91 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~ 91 (451)
...|++.|.+|+||||+++.|......
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999877654
No 457
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=90.73 E-value=0.39 Score=46.39 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=21.7
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCccc
Q 013007 67 NVGTI-GHVDHGKTTLTAAITKVLAEEGKAK 96 (451)
Q Consensus 67 ~I~vi-G~~~~GKSTLi~~L~~~~~~~g~~~ 96 (451)
.|+|+ +..|+||||+.-.|...+...|+..
T Consensus 3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rV 33 (361)
T 3pg5_A 3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRV 33 (361)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcE
Confidence 46666 5688999999999876665555443
No 458
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.69 E-value=0.14 Score=46.84 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..+|+++|.+|+||||+.+.|.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 348999999999999999999764
No 459
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.65 E-value=0.17 Score=45.80 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.+.|++.|++|+||||+.+.|.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999754
No 460
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.64 E-value=0.25 Score=46.85 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
--+.+.|.+|+|||||+-.+.......|
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g 96 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND 96 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999876554444
No 461
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.50 E-value=0.14 Score=51.38 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.++++|+.|+|||||++.|.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 478999999999999999998764
No 462
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.50 E-value=0.15 Score=42.56 Aligned_cols=23 Identities=35% Similarity=0.274 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.+++|+.|+||||++++|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999997544
No 463
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.48 E-value=0.13 Score=52.64 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.++++|+.|+|||||++.|.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999764
No 464
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.45 E-value=0.17 Score=45.44 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.+|+++|.+|+||||+...|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999754
No 465
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.42 E-value=0.15 Score=46.37 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|++|+|||||+++|.+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999998653
No 466
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.12 E-value=0.44 Score=48.52 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
..|.++|.+|+||||+...|...+.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999976543
No 467
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.08 E-value=0.42 Score=48.43 Aligned_cols=27 Identities=4% Similarity=-0.157 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhc
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEE 92 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~ 92 (451)
--+.+.|.+|+|||||+-.+.......
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~ 269 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTA 269 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTT
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHh
Confidence 367899999999999999887655443
No 468
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.07 E-value=1 Score=44.74 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCc
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~ 94 (451)
--+.+.|.+|+|||||+-.+.......|.
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~ 226 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDD 226 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCC
Confidence 47899999999999999988766554443
No 469
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.00 E-value=0.14 Score=52.41 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=22.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
++--.++++|+.|+|||||++.|.+..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 334588999999999999999998754
No 470
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=89.91 E-value=1.1 Score=43.40 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccce
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKA 97 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~ 97 (451)
.+.+.|..|+||||+.-+|.......|+...
T Consensus 4 i~~~~gkGG~GKTt~a~~la~~la~~g~~vl 34 (374)
T 3igf_A 4 ILTFLGKSGVARTKIAIAAAKLLASQGKRVL 34 (374)
T ss_dssp EEEEECSBHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCeE
Confidence 4567888999999999999877766666443
No 471
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.88 E-value=0.25 Score=44.09 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..|.++|++||||+|....|...
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999754
No 472
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.85 E-value=0.18 Score=46.89 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAIT 86 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~ 86 (451)
.+.|+++|.+|+||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 473
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.82 E-value=0.25 Score=43.09 Aligned_cols=26 Identities=38% Similarity=0.342 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAE 91 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~ 91 (451)
..+.+.|++|+|||||+.++......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999876543
No 474
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.75 E-value=0.16 Score=52.67 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.++++|+.|+|||||++.|.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998754
No 475
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.56 E-value=0.23 Score=44.66 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.+++++++|.+|+||||+...|...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999754
No 476
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.53 E-value=0.18 Score=50.10 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
-+++++|+.|+|||||++.|.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999865
No 477
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.48 E-value=0.2 Score=47.79 Aligned_cols=24 Identities=38% Similarity=0.303 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.+++.|++|+|||||++.|.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999998764
No 478
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.47 E-value=0.2 Score=46.36 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|++|+|||||+++|.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 49999999999999999998653
No 479
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.43 E-value=0.15 Score=52.90 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.++++|+.|+|||||++.|.+..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 378999999999999999998653
No 480
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.42 E-value=0.18 Score=52.38 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.++++|+.|+|||||++.|.+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 479999999999999999998754
No 481
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.37 E-value=1.4 Score=38.19 Aligned_cols=33 Identities=9% Similarity=-0.033 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCcccee
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAI 98 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~ 98 (451)
.-..+.|+.|+||||.+-.+.......|.....
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v 41 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQV 41 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 467899999999999988887776666655443
No 482
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.32 E-value=0.22 Score=48.51 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
+...++++|++|+|||||++.|.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3458999999999999999999864
No 483
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.30 E-value=0.21 Score=44.05 Aligned_cols=22 Identities=32% Similarity=0.256 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITK 87 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~ 87 (451)
-.++++|++|+|||||+..|..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 484
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.29 E-value=0.26 Score=44.36 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
....|+++|.+|+||||+.+.|.+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999998753
No 485
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.21 E-value=0.26 Score=43.05 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.|++.|.+|+||||+.+.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999754
No 486
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.13 E-value=0.27 Score=41.84 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
....+.+.|++|+|||||+..+.....
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999986644
No 487
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.04 E-value=0.28 Score=46.17 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.-|+++|++++|||||...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46899999999999999999755
No 488
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.94 E-value=0.2 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999753
No 489
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.91 E-value=0.23 Score=44.59 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
-.++++|++|+|||||+..|...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 37899999999999999999864
No 490
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.86 E-value=0.98 Score=42.75 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
+...|.+.|++|+|||+|+.++.+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 4468999999999999999999865
No 491
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.69 E-value=0.18 Score=52.31 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.++++|+.|+|||||++.|.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 478999999999999999998754
No 492
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.58 E-value=0.15 Score=52.98 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.++++|+.|+|||||++.|.+..
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 378999999999999999998653
No 493
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.50 E-value=0.15 Score=47.73 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
...|++.|.+|+||||+.+.|.....
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35799999999999999999976543
No 494
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.49 E-value=0.16 Score=52.80 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.++++|+.|+|||||++.|.+..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 488999999999999999998653
No 495
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.47 E-value=0.43 Score=42.80 Aligned_cols=27 Identities=22% Similarity=0.075 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
.++++|++|+|||||+..+.......|
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~ 51 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMG 51 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 789999999999999888875544433
No 496
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.46 E-value=1.4 Score=42.14 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=23.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
.....+.+.|++|+|||||+..+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446899999999999999999986653
No 497
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.41 E-value=0.2 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998653
No 498
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.36 E-value=0.29 Score=45.75 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITK 87 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~ 87 (451)
..|.++|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 499
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.31 E-value=0.24 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
.++++|+.|+|||||++.|.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999753
No 500
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.21 E-value=0.84 Score=46.45 Aligned_cols=127 Identities=9% Similarity=0.085 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcHHHHHHH--HHHHHHhcCccceeeeeccCCchhhhhcCceEE---------eeEEEeeeCCeeEEEEec
Q 013007 67 NVGTIGHVDHGKTTLTAA--ITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA---------TAHVEYETAKRHYAHVDC 135 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~--L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~---------~~~~~~~~~~~~i~iiDt 135 (451)
.++++|++|+|||||++. +.+.....................+..+.+... ..............+++.
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~ 120 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGG 120 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCCSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhhcc
Q ss_pred CChHHHHHHHHHhcccCCEEEEEEeCCCCCC----------ccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 136 PGHADYVKNMITGAAQMDGGILVVSAPDGPM----------PQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 136 PG~~~~~~~~~~~~~~~d~~ilVvda~~g~~----------~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
-|..++.......++.-+.-++++|.-.... .+..+.+..+...|+. +|++-..+|..
T Consensus 121 ~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~t-vl~itH~~~~~ 188 (525)
T 1tf7_A 121 FDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGAT-TVMTTERIEEY 188 (525)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCE-EEEEEECSSSS
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCE-EEEEecCCCCc
Done!