RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013007
(451 letters)
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 252 bits (645), Expect = 3e-83
Identities = 140/203 (68%), Positives = 164/203 (80%), Gaps = 9/203 (4%)
Query: 63 KLHVNVGTIGHVDHGKTTLTAAITKVL-AEEGKAKAIAFDEIDKAPEEKKRGITIATAHV 121
K HVNVGTIGHVDHGKTTLTAA+T V AE + + +IDKAPEE+ RGITI TAHV
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHV 60
Query: 122 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV 181
EYETAKRHY+HVDCPGHADY+KNMITGAAQMDG ILVVSA DGPMPQT+EHILLARQVGV
Sbjct: 61 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 120
Query: 182 PSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQ-------- 233
P +V F+NKVD+V+D ELL+LVEME+R+LL+ Y+FPGDE+P+IRGSA AL+
Sbjct: 121 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKT 180
Query: 234 GKNEEIGKKAILKLMDAVDEYIP 256
+ E I +L+DA+DEYIP
Sbjct: 181 RRGENEWVDKIWELLDAIDEYIP 203
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 239 bits (612), Expect = 2e-78
Identities = 132/196 (67%), Positives = 160/196 (81%)
Query: 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE 122
K HVNVGTIGHVDHGKTTLTAAITK+LAE G AK ++EID APEE+ RGITI AHVE
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE 60
Query: 123 YETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVP 182
Y TA RHYAH DCPGHADYVKNMITG A +DG ILVV+A DGPMPQT+EH+LLARQ+GV
Sbjct: 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE 120
Query: 183 SLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKK 242
+V ++NK D V+D E++ELVE+E+RELL+ + + G+E PII GSA AL+ ++ E+G K
Sbjct: 121 HVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLK 180
Query: 243 AILKLMDAVDEYIPDP 258
++ KL+DAVD YIP P
Sbjct: 181 SVQKLLDAVDTYIPVP 196
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 209 bits (532), Expect = 9e-66
Identities = 74/237 (31%), Positives = 107/237 (45%), Gaps = 38/237 (16%)
Query: 61 RTKLHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEEGKAKAIAFDEIDK 105
+ K H+NV IGHVD GK+T T + K AE GK +DK
Sbjct: 2 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDK 61
Query: 106 APEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP 165
E++RGITI A ++ET K +D PGH D++KNMITG +Q D IL+++ G
Sbjct: 62 LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE 121
Query: 166 M-------PQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLELVEMELRELLSFYKFP 217
QT+EH LLA +GV L+ +NK+D V+ DE + + E + +
Sbjct: 122 FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYN 181
Query: 218 GDEIPIIRGSA------------TSALQG--KNEEIGKKAILKLMDAVDEYIPDPER 260
+P + S +G K + G L++A+D I P R
Sbjct: 182 PKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSR 237
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 166 bits (422), Expect = 8e-50
Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 32/227 (14%)
Query: 63 KLHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEEGKAKAIAFDEIDKAP 107
K H+N+ IGHVDHGK+TL + + + GK +D+
Sbjct: 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLK 60
Query: 108 EEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-- 165
EE++RG+TI + +ET K + +D PGH D+VKNMITGA+Q D ILVVSA G
Sbjct: 61 EERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 120
Query: 166 -----MPQTKEHILLARQVGVPSLVCFLNKVDLVE---DEELLELVEMELRELLSFYKFP 217
QT+EHI+LA+ +G+ L+ +NK+DL E DE+ + + ++ + + Y F
Sbjct: 121 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFN 180
Query: 218 GDEIPIIRGSATSALQGKN----EEIGKKAILKLMDAVDEYIPDPER 260
+++ + A G N E K ++ + + P +
Sbjct: 181 TNKVRFVP---VVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPK 224
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 148 bits (373), Expect = 6e-43
Identities = 65/216 (30%), Positives = 96/216 (44%), Gaps = 29/216 (13%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT 118
+ + + VN+G +GHVDHGKTTL AIT + + + I E G+ +
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESC 61
Query: 119 AH---------------VEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVS-AP 162
+ R + +D PGH + M++GAA MDG ILVV+
Sbjct: 62 KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 121
Query: 163 DGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222
P PQT+EH + +GV +L+ NKVD+V EE L + + + +P
Sbjct: 122 PFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVP 178
Query: 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258
II SAL N I L++ ++EYI P
Sbjct: 179 IIPV---SALHKIN-------IDSLIEGIEEYIKTP 204
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2
{Escherichia coli [TaxId: 562]}
Length = 92
Score = 130 bits (329), Expect = 9e-38
Identities = 65/93 (69%), Positives = 82/93 (88%), Gaps = 2/93 (2%)
Query: 262 LDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKK 321
+DKPFL+PIEDVFSI GRGTV TGRVE+G IKVGEEVE++G+ + K+T TGVEMF+K
Sbjct: 2 IDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGI--KETQKSTCTGVEMFRK 59
Query: 322 ILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354
+LD G AG+NVG+LLRG+KRE+++RGQV+AKPG
Sbjct: 60 LLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 92
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2
{Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 98
Score = 129 bits (326), Expect = 3e-37
Identities = 59/98 (60%), Positives = 78/98 (79%), Gaps = 2/98 (2%)
Query: 260 RQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF 319
R L+KPFL+P+E V+SI GRGTV TG +E+G +K G+E E LG +++T VTG+EMF
Sbjct: 2 RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGH--SKNIRTVVTGIEMF 59
Query: 320 KKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVK 357
K LDR EAGDN+G L+RGLKRED++RG V+AKPGS++
Sbjct: 60 HKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQ 97
>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2
{Thermus thermophilus [TaxId: 274]}
Length = 100
Score = 127 bits (320), Expect = 2e-36
Identities = 65/100 (65%), Positives = 82/100 (82%), Gaps = 1/100 (1%)
Query: 258 PERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVE 317
P R +DKPFLMP+EDVF+I GRGTVATGR+E+G +KVG+EVE++G + KT VTGVE
Sbjct: 1 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVG-LAPETRKTVVTGVE 59
Query: 318 MFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVK 357
M +K L G AGDNVG+LLRG+ RE+V+RGQV+AKPGS+
Sbjct: 60 MHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSIT 99
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 130 bits (328), Expect = 4e-36
Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 29/216 (13%)
Query: 63 KLHVNVGTIGHVDHGKTTLTAAITK-----------VLAEEGKAKAIAFDEI------DK 105
K + T G+VD GK+TL + + + K D++ D
Sbjct: 7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDG 66
Query: 106 APEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP 165
E+++GITI A+ + TAKR + D PGH Y +NM TGA+ D I++V A G
Sbjct: 67 LQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV 126
Query: 166 MPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLELVEMELRELLSFYKFPGDEIPII 224
QT+ H +A +G+ +V +NK+DL DE + E ++ + + F + +
Sbjct: 127 QTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFV 186
Query: 225 RGSATSALQGKN--------EEIGKKAILKLMDAVD 252
SAL+G N ++++++++ V+
Sbjct: 187 PM---SALKGDNVVNKSERSPWYAGQSLMEILETVE 219
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos
taurus), mitochondrial [TaxId: 9913]}
Length = 103
Score = 125 bits (316), Expect = 9e-36
Identities = 36/92 (39%), Positives = 61/92 (66%)
Query: 359 YKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAF 418
++K EA++Y+LTK+EGGRH F S++ P ++ T D+ ++ L ++ MPG+++
Sbjct: 1 HQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTL 60
Query: 419 ELISPLPLQQGQRFALREGGRTVGAGVVSKVI 450
L P+ L++GQRF LR+G RT+G G+V+
Sbjct: 61 ILRQPMILEKGQRFTLRDGNRTIGTGLVTDTP 92
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 129 bits (324), Expect = 6e-35
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 3/144 (2%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEI--DKAPEEKKRGITIATAHVEYE 124
N+G H+D GKTT T I K + D +E++RGITI A
Sbjct: 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 67
Query: 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSL 184
+D PGH D+ + +DG I+V + G PQ++ A + VP +
Sbjct: 68 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 127
Query: 185 VCFLNKVDLVEDEELLELVEMELR 208
F NK+D + L + M+ R
Sbjct: 128 A-FANKMDKTGADLWLVIRTMQER 150
>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus
thermophilus [TaxId: 274]}
Length = 93
Score = 119 bits (299), Expect = 2e-33
Identities = 61/91 (67%), Positives = 72/91 (79%)
Query: 360 KKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFE 419
KFEA +YVL K+EGGRHT FFS YRPQ Y RT DVTG V+L V+MVMPGDNV E
Sbjct: 2 TKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMVMPGDNVTFTVE 61
Query: 420 LISPLPLQQGQRFALREGGRTVGAGVVSKVI 450
LI P+ L++G RFA+REGGRTVGAGVV+K++
Sbjct: 62 LIKPVALEEGLRFAIREGGRTVGAGVVTKIL 92
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 121 bits (304), Expect = 5e-33
Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 24/205 (11%)
Query: 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAK---------AIAFDEIDKAPEEKKRG 113
+ VN+G +GHVDHGKTTLT A+T V + + A EI + P +
Sbjct: 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYS 62
Query: 114 ITIATAHVEYE-TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD-GPMPQTKE 171
+ + +E R + +D PGH + M+ GA+ MDG ILV++A + P PQT+E
Sbjct: 63 TSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE 122
Query: 172 HILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSA 231
H++ + +G +++ NK++LV+ E+ +++E + + PII SA
Sbjct: 123 HLMALQIIGQKNIIIAQNKIELVDKEK-ALENYRQIKEFIE--GTVAENAPIIPI---SA 176
Query: 232 LQGKNEEIGKKAILKLMDAVDEYIP 256
L G N I L+ A++++IP
Sbjct: 177 LHGAN-------IDVLVKAIEDFIP 194
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 121 bits (303), Expect = 2e-32
Identities = 66/224 (29%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 63 KLHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEEGKAKAIAFDEIDKAP 107
K HVN+ IGHVD GK+TL I + E GK +D
Sbjct: 22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 81
Query: 108 EEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP 167
EE+++G T+ +ET R ++ +D PGH YV NMI GA+Q D G+LV+SA G
Sbjct: 82 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 141
Query: 168 -------QTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK----- 215
QT+EH +LAR G+ LV +NK+D + E + + +L F +
Sbjct: 142 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 201
Query: 216 FPGDEIPIIRGSATSALQGKN-EEIGKKAILK------LMDAVD 252
++ + SA G+N ++ ++ L++ +D
Sbjct: 202 NSKTDVKYMP---VSAYTGQNVKDRVDSSVCPWYQGPSLLEYLD 242
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 121 bits (305), Expect = 1e-31
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 19/162 (11%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET- 125
N+ I HVDHGK+TLT ++ + AKA D +E++RGITI + + +
Sbjct: 19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 78
Query: 126 ---------------AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTK 170
+D PGH D+ + DG ++VV +G QT+
Sbjct: 79 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE 138
Query: 171 EHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212
+ A + +V +NKVD E ++ + +L + +
Sbjct: 139 TVLRQALGERIKPVV-VINKVDRALLEL--QVSKEDLYQTFA 177
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and
4 {Methanococcus maripaludis [TaxId: 39152]}
Length = 92
Score = 110 bits (276), Expect = 3e-30
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Query: 260 RQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF 319
R + F MP++ F I+G GTV TG + +G +KVG+E++VL + T V ++ F
Sbjct: 1 RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINM----STKVRSIQYF 56
Query: 320 KKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS 355
K+ + +AGD VG+ ++G+ + + RG ++ +
Sbjct: 57 KESVMEAKAGDRVGMAIQGVDAKQIYRGCILTSKDT 92
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 94
Score = 109 bits (275), Expect = 5e-30
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 263 DKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKI 322
DKP +P++DV+ I G GTV GRVE G IK G V T V VEM +
Sbjct: 1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGV----TTEVKSVEMHHEQ 56
Query: 323 LDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS 355
L++G GDNVG ++ + ++++RG V +
Sbjct: 57 LEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKN 89
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 95
Score = 103 bits (259), Expect = 9e-28
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Query: 263 DKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKI 322
DKP +PI+DV+SI G GTV GRVE G +KVG+++ + + V +E
Sbjct: 3 DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGK----VGEVRSIETHHTK 58
Query: 323 LDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS 355
+D+ E GDN+G +RG++++D++RG V+ P +
Sbjct: 59 MDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNN 91
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 121
Score = 100 bits (251), Expect = 2e-26
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 19/119 (15%)
Query: 258 PERQLDKPFLMPIEDVFSI--------QGRGTVATGRVEQGTIKVGEEVEVLGL------ 303
P+R +KP M + F + + G V G + QG +KVG+E+E+
Sbjct: 1 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEH 60
Query: 304 --TQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLR---GLKREDVQRGQVIAKPGSVK 357
+ + T + ++ + ++ G VG+ + L + D+ G V+ KPG +
Sbjct: 61 GRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLP 119
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 97.2 bits (242), Expect = 2e-25
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 259 ERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGV-E 317
ER+++ PF+MPI + GT+ G++E G+IK V V+ + Q VT + +
Sbjct: 3 ERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQ----TLEVTAIYD 56
Query: 318 MFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS 355
+ + GD V L +RG DVQ G V+ +
Sbjct: 57 EADEEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN 93
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 118
Score = 97.0 bits (241), Expect = 6e-25
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 19/117 (16%)
Query: 260 RQLDKPFLMPIEDVFSIQG--------RGTVATGRVEQGTIKVGEEVEVLGL-------- 303
R D M + F I +G V G + QG KVG+E+E+
Sbjct: 1 RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNK 60
Query: 304 TQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLR---GLKREDVQRGQVIAKPGSVK 357
T L T + + IL + G +G+ L + D G V+ PG++
Sbjct: 61 TFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLP 117
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit,
domain II {Sulfolobus solfataricus [TaxId: 2287]}
Length = 114
Score = 88.5 bits (219), Expect = 6e-22
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 19/113 (16%)
Query: 260 RQLDKPFLMPIEDVFSIQG--------RGTVATGRVEQGTIKVGEEVEVL--------GL 303
R L + +M + F + +G V G + QG KV +E++VL G
Sbjct: 1 RDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGK 60
Query: 304 TQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLR---GLKREDVQRGQVIAKP 353
+ T ++ + + + G V + L + D G +I
Sbjct: 61 VSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLA 113
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 89.8 bits (221), Expect = 1e-21
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 22/195 (11%)
Query: 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE 124
++N+G GH+DHGKTTL+ +T++ + DK PE +KRGITI ++
Sbjct: 5 NINLGIFGHIDHGKTTLSKVLTEIASTSAH---------DKLPESQKRGITIDIGFSAFK 55
Query: 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSL 184
VD PGHAD ++ +++ A +D ++VV A +GP QT EH+L+ +P
Sbjct: 56 LENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP-- 113
Query: 185 VCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAI 244
+ + E ++ EM ++ +L + II SA G +
Sbjct: 114 IIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKN-SSIIP---ISAKTGFG-------V 162
Query: 245 LKLMDAVDEYIPDPE 259
+L + + + + E
Sbjct: 163 DELKNLIITTLNNAE 177
>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 91
Score = 84.5 bits (209), Expect = 7e-21
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 263 DKPFL-MPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKK 321
KP + +E+V +I G V G VE G I VG +V+ PS + +E ++
Sbjct: 6 KKPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKG------PSGIGGIVRIERNRE 58
Query: 322 ILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS 355
++ AGD +G+ + G K V++G V+ +
Sbjct: 59 KVEFAIAGDRIGISIEG-KIGKVKKGDVLEIYQT 91
>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 92
Score = 76.1 bits (187), Expect = 7e-18
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 265 PFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILD 324
P++ V G + G + G+E+ VL + + V + F+ L+
Sbjct: 6 DLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGK----SSRVKSIVTFEGELE 61
Query: 325 RGEAGDNVGLLLRGLKREDVQRGQVIAKPGSV 356
+ G V L + D+ RG ++ +V
Sbjct: 62 QAGPGQAVTLTMED--EIDISRGDLLVHADNV 91
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 79.6 bits (195), Expect = 2e-17
Identities = 35/241 (14%), Positives = 63/241 (26%), Gaps = 57/241 (23%)
Query: 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFD----------EIDK------------ 105
V +G GKTTLT + L + K + D ID
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 106 ----------APEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGG 155
+ + + + Y +D PG + G M+
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL 122
Query: 156 -----ILVVSAPDGPMPQTKEHILLAR-----QVGVPSLVCFLNKVDLVEDEELLELVEM 205
+ + P + ++G ++ LNKVDL+ +EE
Sbjct: 123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIP-ALNKVDLLSEEEKERH--R 179
Query: 206 ELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKA------------ILKLMDAVDE 253
+ E + + P ++G + E+ L E
Sbjct: 180 KYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE 239
Query: 254 Y 254
+
Sbjct: 240 H 240
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 78.8 bits (193), Expect = 4e-17
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 67 NVGTIGHVDHGKTTLTAAI---TKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY 123
V +GH GKTTLT A+ T G+ + D PE K T+ T
Sbjct: 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGT-TTTDYTPEAKLHRTTVRTGVAPL 62
Query: 124 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPS 183
+D PG+ D+V + D ++ VSA G T+ +A ++G+P
Sbjct: 63 LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPR 122
Query: 184 LVCFLNK 190
+V
Sbjct: 123 MVVVTKL 129
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 77.4 bits (189), Expect = 6e-17
Identities = 36/141 (25%), Positives = 51/141 (36%), Gaps = 3/141 (2%)
Query: 68 VGTIGHVDHGKTTLTAAITK--VLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125
V +GHVDHGKTTL I V + E + + +
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLV 185
+D PGH + G A D IL+V +G PQT+E + + R P V
Sbjct: 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FV 126
Query: 186 CFLNKVDLVEDEELLELVEME 206
NK+D + + E
Sbjct: 127 VAANKIDRIHGWRVHEGRPFM 147
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 60.1 bits (144), Expect = 3e-11
Identities = 38/191 (19%), Positives = 68/191 (35%), Gaps = 23/191 (12%)
Query: 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGIT---IATAHVE 122
+ V +G + GK+TL AI K +A+ + + V+
Sbjct: 9 IKVAIVGRPNVGKSTLFNAIL------NKERALVSPIPGTTRDPVDDEVFIDGRKYVFVD 62
Query: 123 YETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVP 182
+R ++ + D ++V+ A G Q + L + G
Sbjct: 63 TAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA 122
Query: 183 SLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKK 242
S+V F +V E+ + RE L F + P+I TSA +G N
Sbjct: 123 SVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY----SPLI---FTSADKGWN------ 169
Query: 243 AILKLMDAVDE 253
I +++DA++
Sbjct: 170 -IDRMIDAMNL 179
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 52.0 bits (123), Expect = 1e-08
Identities = 32/196 (16%), Positives = 66/196 (33%), Gaps = 21/196 (10%)
Query: 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK 127
+ G + GK+TL +T GK + I+ + K + +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 128 RHYAHVDCPGHADYVK------NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV 181
D H ++ + I+ G +P E R++ +
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122
Query: 182 PSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGK 241
P + +NK+D +++ + + + + + + + IPI SA G N
Sbjct: 123 P-TIVAVNKLDKIKNVQEV-INFLAEKFEVPLSEIDKVFIPI------SAKFGDN----- 169
Query: 242 KAILKLMDAVDEYIPD 257
I +L + + E I +
Sbjct: 170 --IERLKNRIFEVIRE 183
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 50.1 bits (118), Expect = 7e-08
Identities = 31/202 (15%), Positives = 55/202 (27%), Gaps = 32/202 (15%)
Query: 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK 127
V +G + GK+TL + G A + + +T + +
Sbjct: 8 VAIVGKPNVGKSTLLNNLL------GVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTP 61
Query: 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCF 187
+ +D G + A +V L VG ++
Sbjct: 62 GLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLV 121
Query: 188 LNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKL 247
NK+D + E E + Y E SAL + + +L
Sbjct: 122 GNKLDAAKYPE----------EAMKAYHELLPEAEPR---MLSALDERQ-------VAEL 161
Query: 248 MDAVDEYIPDPERQLDKPFLMP 269
+ +P + PF P
Sbjct: 162 KADLLALMP------EGPFFYP 177
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 47.8 bits (112), Expect = 4e-07
Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 18/190 (9%)
Query: 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK 127
+ +G + GK+TL + G+ +I + T Y
Sbjct: 8 IAIVGRPNVGKSTLLNKLL------GQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTP 61
Query: 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCF 187
+ + K + ++ I VV E +L + G ++
Sbjct: 62 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDD--EMVLNKLREGKAPVILA 119
Query: 188 LNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKL 247
+NKVD V+++ L L ++F +PI SA G N + + K
Sbjct: 120 VNKVDNVQEKADLLPHLQFLASQMNFLDI----VPI------SAETGLNVDTIAAIVRKH 169
Query: 248 MDAVDEYIPD 257
+ + P+
Sbjct: 170 LPEATHHFPE 179
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 47.1 bits (110), Expect = 8e-07
Identities = 22/184 (11%), Positives = 59/184 (32%), Gaps = 17/184 (9%)
Query: 68 VGTIGHVDHGKTTLTAAIT--KVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125
+ G + GK++ ++ K LA ++ + +
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDV------PGY 79
Query: 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLV 185
+ + ++ IT ++ + +V P + + G+P ++
Sbjct: 80 GFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP-VI 138
Query: 186 CFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAIL 245
K D + + + + +R+ L+ +I S+ K ++ AI
Sbjct: 139 VIATKADKIPKGKWDKHAK-VVRQTLNIDPED----ELI---LFSSETKKGKDEAWGAIK 190
Query: 246 KLMD 249
K+++
Sbjct: 191 KMIN 194
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 128
Score = 44.8 bits (106), Expect = 2e-06
Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 11/112 (9%)
Query: 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDR 325
+ + VF + V G I+ G + TV ++ + L
Sbjct: 7 IRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMNDDGET----VGTVESMQDKGENLKS 61
Query: 326 GEAGDNVGLLLRG-LKREDVQRGQVIAKP---GSVKTYKKFEAEIYVLTKDE 373
G V + ++ + + + G + K+ + LT +E
Sbjct: 62 ASRGQKVAMAIKDAVYGKTIHEGDTLYVDIPENHYHILKEQLSG--DLTDEE 111
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 44.7 bits (104), Expect = 4e-06
Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 29/196 (14%)
Query: 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK 127
V +G + GK+TL + K KAI DE + + + +
Sbjct: 3 VLIVGRPNVGKSTLFNKLV------KKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTC 56
Query: 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCF 187
+ + + + + D +L V + + E + + +
Sbjct: 57 GVFDNPQDIISQKMKEVTLNMIREAD-LVLFVVDGKRGITKEDESLADFLRKSTVDTILV 115
Query: 188 LNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKL 247
NK + + + E E+ G+ IP+ SA N + +
Sbjct: 116 ANKAENLREFEREVKPELYSLGF-------GEPIPV------SAEHNIN-------LDTM 155
Query: 248 MDAVDEYIPDPERQLD 263
++ + + + E+ LD
Sbjct: 156 LETIIKKL--EEKGLD 169
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 44.0 bits (102), Expect = 8e-06
Identities = 24/192 (12%), Positives = 56/192 (29%), Gaps = 23/192 (11%)
Query: 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125
+ V G + GK++ +T K++A + +A +
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQ-------KSLARTSKTPGRTQLINLFEVADGKRLVDL 69
Query: 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLV 185
YA V + + + + +V D P + ++
Sbjct: 70 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIA 129
Query: 186 CFL--NKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKA 243
+ K D + + M +L+F ++ + S+L+ +
Sbjct: 130 VLVLLTKADKLASGARKAQLNMVREAVLAF----NGDVQVE---TFSSLKKQG------- 175
Query: 244 ILKLMDAVDEYI 255
+ KL +D +
Sbjct: 176 VDKLRQKLDTWF 187
>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha,
C-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 107
Score = 41.5 bits (97), Expect = 2e-05
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 26/108 (24%)
Query: 362 FEAEIYVLTKDEGGRH-TAFFSNYRPQIYLRTADVTGKVELL-------------GDVKM 407
F A I V+ H TA + Y P +++ TA V +V L + +
Sbjct: 4 FTARIIVVW------HPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQF 57
Query: 408 VMPGDNVNAAFELISPLPL------QQGQRFALREGGRTVGAGVVSKV 449
+ GD F+ I PL + RFA+R+ G+TVG G++ V
Sbjct: 58 LKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV 105
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 41.1 bits (95), Expect = 9e-05
Identities = 31/211 (14%), Positives = 61/211 (28%), Gaps = 43/211 (20%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 126
+VG +G GK+TL + ++ + + +
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSS---------------AKPKIADYHFTTLVPNLGMVETDD 47
Query: 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGI---------LVVSAPDGPMPQTKEHILLAR 177
R + D PG + + Q I + +S +G P +
Sbjct: 48 GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQE 107
Query: 178 QVGVPS------LVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSA 231
+ NK+D+ E E LE + +L D+ P+ SA
Sbjct: 108 LSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT----------DDYPVF---PISA 154
Query: 232 LQGKNEEIGKKAILKLMDAVDEYIPDPERQL 262
+ + + ++ E+ E +L
Sbjct: 155 VTREGLRELLFEVANQLENTPEFPLYDEEEL 185
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 41.3 bits (96), Expect = 1e-04
Identities = 24/215 (11%), Positives = 48/215 (22%), Gaps = 38/215 (17%)
Query: 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE 122
+NV G GK++ + + EE A E H
Sbjct: 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVE------------VTMERHPY 101
Query: 123 YETAKRHYAHVDCPG---HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV 179
+ D PG + + ++ + + +
Sbjct: 102 KHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM 161
Query: 180 GVPSLVCFLNKVDLVED------------EELLELVEMELRELLSFYKFPGDEIPIIRGS 227
KVD E++L+ + + I ++
Sbjct: 162 KKEFYFVR-TKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNK 220
Query: 228 ATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQL 262
+ LMD + +P +R
Sbjct: 221 ----------NVCHYDFPVLMDKLISDLPIYKRHN 245
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 39.6 bits (91), Expect = 3e-04
Identities = 20/193 (10%), Positives = 48/193 (24%), Gaps = 17/193 (8%)
Query: 71 IGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHY 130
G + GKT+L +T + + T K Y
Sbjct: 9 AGPQNSGKTSLLTLLT-------TDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61
Query: 131 AHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNK 190
D + ++ + + + G+ L+ NK
Sbjct: 62 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI-ACNK 120
Query: 191 VDLVE---DEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKL 247
+L ++ + +E E+++++ K +E+ + E +
Sbjct: 121 SELFTARPPSKIKDALESEIQKVIERRKKSLNEVER------KINEEDYAENTLDVLQST 174
Query: 248 MDAVDEYIPDPER 260
+
Sbjct: 175 DGFKFANLEASVV 187
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 39.2 bits (90), Expect = 4e-04
Identities = 25/196 (12%), Positives = 48/196 (24%), Gaps = 27/196 (13%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 126
V +G D GKT L + I + A V
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLT------GQYRDTQTSI---------TDSSAIYKVNNNRG 46
Query: 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV------- 179
+ + + + + VV + L + +
Sbjct: 47 NSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALK 106
Query: 180 GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEI 239
PSL+ NK D+ + + + +EL + S + ++
Sbjct: 107 NSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAP-----STLDSSSTAPAQL 161
Query: 240 GKKAILKLMDAVDEYI 255
GKK + +
Sbjct: 162 GKKGKEFEFSQLPLKV 177
>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 107
Score = 36.7 bits (85), Expect = 7e-04
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 28/109 (25%)
Query: 362 FEAEIYVLTKDEGGRHTAFFSN-YRPQIYLRTADV--------------TGKVELLGDVK 406
F A + VL H S Y P + TA + +GK L K
Sbjct: 4 FNATVIVLN------HPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKK-LEDHPK 56
Query: 407 MVMPGDNVNAAFELISPLPLQ------QGQRFALREGGRTVGAGVVSKV 449
+ GD F P+ ++ RFA+R+ +TV GV+ V
Sbjct: 57 FLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSV 105
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 37.7 bits (86), Expect = 0.001
Identities = 40/212 (18%), Positives = 71/212 (33%), Gaps = 47/212 (22%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 126
+VG +G+ + GK++L AA+T+ V +
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTR---------------AHPKIAPYPFTTLSPNLGVVEVSE 47
Query: 127 KRHYAHVDCPGHAD-------YVKNMITGAAQMDGGILVVSAPDGPMPQTK----EHILL 175
+ + D PG + + A+ + V+ A D P+ + E
Sbjct: 48 EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAY 107
Query: 176 ARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGK 235
+ + LNKVDL+E+E + L + RE L+ SAL G
Sbjct: 108 DPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVL-------------PVSALTGA 154
Query: 236 NEEIGKKAILKLMDAVDEYIPD-PERQLDKPF 266
+ L +A+ + P ++ KP
Sbjct: 155 G-------LPALKEALHALVRSTPPPEMPKPV 179
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II
{Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 103
Score = 35.4 bits (81), Expect = 0.002
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 258 PERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVE 317
ER D P L + V G VA R+ +G +K G+ ++ G +
Sbjct: 2 TERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQVRLPHLYVPMGKD 61
Query: 318 MFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKT 358
+ ++ EAG +G+ K E + RG V+ + ++
Sbjct: 62 L--LEVEEAEAGFVLGV----PKAEGLHRGMVLWQGEKPES 96
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 35.9 bits (81), Expect = 0.004
Identities = 26/186 (13%), Positives = 49/186 (26%), Gaps = 29/186 (15%)
Query: 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125
+ V G + GK++L A+ G+ AI D I +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALA------GREAAIVTDIAG--TTRDVLREHIHIDGMPLHI 53
Query: 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILV---VSAPDGPMPQTKEHILLARQVGVP 182
+ +L + D P +AR
Sbjct: 54 IDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKL 113
Query: 183 SLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKK 242
+ NK D+ + + V + +IR SA G+ ++ +
Sbjct: 114 PITVVRNKADITGETLGMSEV---------------NGHALIR---LSARTGEGVDVLRN 155
Query: 243 AILKLM 248
+ + M
Sbjct: 156 HLKQSM 161
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 35.7 bits (81), Expect = 0.005
Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 23/180 (12%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 126
+ +G + GK+TL + + +AI D + I I
Sbjct: 2 RMVIVGKPNVGKSTLLNRLL------NEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDT 55
Query: 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVC 186
+ + ++ + + D + V+ A + ++ + + ++
Sbjct: 56 AGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVIN 115
Query: 187 FLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILK 246
++ V+ + +EE+ + G + ++ SAL+G+ E +++I +
Sbjct: 116 KVDVVEKINEEEIKNKL--------------GTDRHMV---KISALKGEGLEKLEESIYR 158
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 33.1 bits (75), Expect = 0.040
Identities = 11/53 (20%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 156 ILVVSAPDGPMPQTK---EHILLARQVGVPSLVCFLNKVDLVEDEELLELVEM 205
+++V P T + ++LA + + +++ NK+DL ++++L ++ E+
Sbjct: 14 VILVVTVKMPETSTYIIDKFLVLAEKNELETVMVI-NKMDLYDEDDLRKVREL 65
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 101
Score = 31.6 bits (72), Expect = 0.046
Identities = 6/59 (10%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 272 DVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGD 330
+V G G + G ++ + + + ++ + T + + + + + E+
Sbjct: 11 EVKEETGLGMTIDAVIYDGILRKDDTI-AMMTSKDV-ISTRIRSLLKPRPLEEMRESRK 67
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 32.8 bits (74), Expect = 0.059
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 149 AAQMDGGILVVSAPDGPMPQTK---EHILLARQVGVPSLVCFLNKVDLVEDEELLELVEM 205
+D +LV SA P T ++L + ++C K+DL+ED++ + ++
Sbjct: 8 ICNVDQAVLVFSAVQ-PSFSTALLDRFLVLVEANDIQPIICI-TKMDLIEDQDTEDTIQA 65
Query: 206 ELRELLSFY 214
+ +
Sbjct: 66 YAEDYRNIG 74
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 31.6 bits (70), Expect = 0.098
Identities = 31/176 (17%), Positives = 53/176 (30%), Gaps = 22/176 (12%)
Query: 71 IGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHY 130
+G GKTT I G+ F+E D P I +V +
Sbjct: 8 VGLQYSGKTTFVNVIAS-----GQ-----FNE-DMIPTVGFNMRKITKGNVTIKLWDIGG 56
Query: 131 AHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNK 190
Y + + +D + + + + G+P LV NK
Sbjct: 57 QPRFRSMWERYCRGVSAIVYMVDAAD--QEKIEASKNELHNLLDKPQLQGIPVLVLG-NK 113
Query: 191 VDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILK 246
DL + EL+E + EI S + N +I + +++
Sbjct: 114 RDLPGALDEKELIEKMNLSAIQDR-----EICCYS---ISCKEKDNIDITLQWLIQ 161
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase
MurC {Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 32.0 bits (71), Expect = 0.10
Identities = 12/61 (19%), Positives = 21/61 (34%)
Query: 76 HGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDC 135
GKTT TA + VL K+ + I + E E + ++ ++
Sbjct: 23 DGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKGNGPVVYELDESEEFFSEFSP 82
Query: 136 P 136
Sbjct: 83 N 83
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 30.8 bits (68), Expect = 0.29
Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 1/77 (1%)
Query: 77 GKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136
GKT + A+ + G + + + E+ G+ + A + +
Sbjct: 14 GKTVASCALLQAAKAAGY-RTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVN 72
Query: 137 GHADYVKNMITGAAQMD 153
+ + +
Sbjct: 73 PYTFAEPTSPHIISAQE 89
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 29.6 bits (65), Expect = 0.56
Identities = 21/183 (11%), Positives = 49/183 (26%), Gaps = 11/183 (6%)
Query: 77 GKTTLTAAITKVLAEEG-KAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDC 135
GKT ++ +T+ L G + + + + + E R +
Sbjct: 14 GKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAA 73
Query: 136 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVD--- 192
N + +GG + V + + I + +
Sbjct: 74 -------LNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPE 126
Query: 193 LVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVD 252
++ + + + D + I S E+ + +K+MD
Sbjct: 127 VIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMDVGQ 186
Query: 253 EYI 255
Y+
Sbjct: 187 SYV 189
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 138
Score = 28.1 bits (62), Expect = 1.3
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 263 DKPFLMPIEDVFSIQGRGT-VATGRVEQGTIKVGEEVEVLG 302
++ + + +G A GRV GT+K G++V + G
Sbjct: 32 KADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQG 72
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e)
{Archaeon Thermococcus celer [TaxId: 2264]}
Length = 98
Score = 27.0 bits (60), Expect = 1.7
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 157 LVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193
L++ A + ++ AR G+ V+L
Sbjct: 34 LIIVARNARPDIKEDIEYYARLSGIAVYEFEGTSVEL 70
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide
D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
[TaxId: 562]}
Length = 214
Score = 27.7 bits (60), Expect = 2.2
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 76 HGKTTLTAAITKVLAEEGK 94
GKT++ +L++ G
Sbjct: 11 SGKTSVKEMTAAILSQCGN 29
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.5 bits (60), Expect = 2.7
Identities = 33/189 (17%), Positives = 54/189 (28%), Gaps = 33/189 (17%)
Query: 71 IGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH--VEYETAKR 128
IG GK+ L + T+ ++ E K I + A ++ +
Sbjct: 10 IGDSGVGKSNLLSRFTR----------------NEFNLESKSTIGVEFATRSIQVDGKTI 53
Query: 129 HYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSLVCF 187
D G Y + G +LV + + R ++V
Sbjct: 54 KAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 113
Query: 188 L--NKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKN-EEIGKKAI 244
L NK DL + E + TSAL N EE K +
Sbjct: 114 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE-----------TSALDSTNVEEAFKNIL 162
Query: 245 LKLMDAVDE 253
++ V +
Sbjct: 163 TEIYRIVSQ 171
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 27.3 bits (59), Expect = 2.8
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 1/83 (1%)
Query: 77 GKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136
GKTTL ++VL G + E + + G + T R
Sbjct: 13 GKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGR-RIGFDVVTLSGTRGPLSRVGLEPPPG 71
Query: 137 GHADYVKNMITGAAQMDGGILVV 159
V + + L V
Sbjct: 72 KRECRVGQYVVDLTSFEQLALPV 94
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 27.4 bits (60), Expect = 3.2
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 1/78 (1%)
Query: 77 GKTTLTAAITKVLAEEGKAKA-IAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDC 135
GKTT A + +G+ +A D A E+ R + E
Sbjct: 22 GKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIR 81
Query: 136 PGHADYVKNMITGAAQMD 153
+ + +D
Sbjct: 82 RRVEEKARLEARDLILVD 99
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 27.1 bits (59), Expect = 3.5
Identities = 13/100 (13%), Positives = 24/100 (24%), Gaps = 4/100 (4%)
Query: 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAI----AFDEIDKAPEEKKRGITIATAHVEY 123
+G+ GKTTL EG PE V
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVAT 63
Query: 124 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD 163
+ + +++ A + +++V
Sbjct: 64 AVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYK 103
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 27.0 bits (58), Expect = 4.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 77 GKTTLTAAITKVLAEEGK 94
GKTT+TA + LA+ G
Sbjct: 14 GKTTITANLGVALAQLGH 31
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 27.0 bits (58), Expect = 4.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 77 GKTTLTAAITKVLAEEGK 94
GKTT+TA ++ L + G+
Sbjct: 15 GKTTVTANLSVALGDRGR 32
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.0 bits (58), Expect = 4.6
Identities = 17/82 (20%), Positives = 25/82 (30%)
Query: 71 IGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHY 130
IG GK++L AI L + K I DE K I R +
Sbjct: 29 IGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRF 88
Query: 131 AHVDCPGHADYVKNMITGAAQM 152
G +K ++ +
Sbjct: 89 LKGYSSGEIHAMKRLVGNEWKH 110
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 26.9 bits (58), Expect = 4.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 77 GKTTLTAAITKVLAEEGK 94
GKT+++ A LAE+GK
Sbjct: 20 GKTSISCATAIRLAEQGK 37
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 97
Score = 25.5 bits (56), Expect = 4.9
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 157 LVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193
L++ A + P+ + E A +L
Sbjct: 33 LIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNEL 69
>d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon
Thermococcus gorgonarius [TaxId: 71997]}
Length = 426
Score = 27.2 bits (59), Expect = 5.0
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 217 PGDEIP--IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVF 274
PG I +++GS IG +AI ++ D E ++ L +E +
Sbjct: 348 PGTVISYIVLKGSGR---------IGDRAIPFDEFDPAKHKYDAEYYIENQVLPAVERIL 398
Query: 275 SIQG 278
G
Sbjct: 399 RAFG 402
>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase
MurC {Haemophilus influenzae [TaxId: 727]}
Length = 215
Score = 26.3 bits (57), Expect = 5.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 76 HGKTTLTAAITKVLAEEGK 94
HGKTT TA I+ + +
Sbjct: 21 HGKTTTTAMISMIYTQAKL 39
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 25.5 bits (56), Expect = 6.1
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 270 IEDVFSIQGRGTVATGRVEQGTIKVGEEVEVL 301
+ F + GT+A V G I +V ++
Sbjct: 11 VRQTFKVSKVGTIAGCYVTDGKITRDSKVRLI 42
>d1m1ha1 b.114.1.1 (A:51-131) N-utilization substance G protein
NusG, insert domain {Aquifex aeolicus [TaxId: 63363]}
Length = 81
Score = 24.6 bits (53), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 275 SIQGRGTVATGRVEQGTIKVGEEVE 299
S+ G+ V T R+E G +KV E VE
Sbjct: 26 SVLGKKGVTTFRIENGEVKVVESVE 50
>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29
{African clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 196
Score = 25.8 bits (56), Expect = 9.7
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 72 GHVDHGKTTLTAAITKVLAEE 92
G VD +L + + L EE
Sbjct: 60 GFVDTRDISLEEGLKRELEEE 80
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 26.1 bits (56), Expect = 9.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 77 GKTTLTAAITKVLAEEGK 94
GKTT+ AAI LA+ G
Sbjct: 32 GKTTMAAAIAVRLADMGF 49
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 26.1 bits (56), Expect = 9.9
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 77 GKTTLTAAITKVLAEEGK 94
GK+T T +T L GK
Sbjct: 13 GKSTTTQNLTSGLHAMGK 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.386
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,670,422
Number of extensions: 81890
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 85
Length of query: 451
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,199,356
Effective search space: 435366228
Effective search space used: 435366228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.5 bits)