BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013008
(451 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 180/387 (46%), Positives = 244/387 (63%), Gaps = 23/387 (5%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
L+ TY+R P GKG +YD +G YLD +SGIAVN LGH ++A+ DQA L H
Sbjct: 3 LMNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH 62
Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
SN++++ PQ+ELA+ L +F +VFF+NTGTEANEAAIK ARK E
Sbjct: 63 CSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARK----YGKKKSEKKYR 118
Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
+S NSFHGRT+G+L T + Y+ PFEP++PG + E+ N+E R+ + AVF+
Sbjct: 119 ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMSE-DVCAVFL 177
Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
EPIQGE GI ATKEFL+ R CD+ ALLVFDEVQCG+GRTG L+A++ YG+ PD++T
Sbjct: 178 EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLT 237
Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASKL 372
AK L GG+PIGA +V E+ A+ + GDHG+TF G+PL C A + V+ +++ FL
Sbjct: 238 TAKGLGGGVPIGAVIVNER-ANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVE 296
Query: 373 ARNPH--------------VKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLTAGKG 416
+ + V DVRG+GL+IGI+F +VS V C ++ LLV+ AG
Sbjct: 297 EKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCFENKLLVVPAGN- 355
Query: 417 NVVRLVPPLIISEQELDQAVEILCKTL 443
N +R +PPL + E+D AVE L K L
Sbjct: 356 NTIRFLPPLTVEYGEIDLAVETLKKVL 382
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 182/387 (47%), Positives = 238/387 (61%), Gaps = 23/387 (5%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
L TY+R P GKG +YD +G YLD +SGIAVN LGH ++A+ DQA L H
Sbjct: 15 LXNTYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH 74
Query: 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
SN++++ PQ ELA+ L +F +VFF+NTGTEANEAAIK ARK E
Sbjct: 75 CSNLFWNRPQXELAELLSKNTFGGKVFFANTGTEANEAAIKIARK----YGKKKSEKKYR 130
Query: 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252
+S NSFHGRT+G+L T + Y+ PFEP++PG + E+ N+E R+ AVF+
Sbjct: 131 ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKXSE-DVCAVFL 189
Query: 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312
EPIQGE GI ATKEFL+ R CD+ ALLVFDEVQCG GRTG L+A++ YG+ PD++T
Sbjct: 190 EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLFAYQKYGVVPDVLT 249
Query: 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF----- 367
AK L GG+PIGA +V E+ A+ + GDHG+TF G+PL C A + V+ +++ F
Sbjct: 250 TAKGLGGGVPIGAVIVNER-ANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVE 308
Query: 368 -----LASKLARNPH----VKDVRGLGLIIGIEF--DVSATPVVDACRDSGLLVLTAGKG 416
L KL V DVRG GL IGI+F +VS V C ++ LLV+ AG
Sbjct: 309 EKGNYLXKKLQEXKEEYDVVADVRGXGLXIGIQFREEVSNREVATKCFENKLLVVPAGN- 367
Query: 417 NVVRLVPPLIISEQELDQAVEILCKTL 443
N +R +PPL + E+D AVE L K L
Sbjct: 368 NTIRFLPPLTVEYGEIDLAVETLKKVL 394
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 300 bits (769), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 163/389 (41%), Positives = 239/389 (61%), Gaps = 34/389 (8%)
Query: 73 LVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH 132
L+ Y R PV GKG LYD EG+EYLD SGI VN+LGH +A+ +Q L H
Sbjct: 3 LMNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLH 62
Query: 133 VSNMYYSIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191
VSN+Y + Q ELA +LV + + +VFF+N+GTE+ EAAIK ARK+ R D +
Sbjct: 63 VSNLYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWR----DKGKNKW 118
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251
+F+SF NSFHGRT G+L+ T + + FEP++PG ++ + +I++ KL+ +TA +
Sbjct: 119 KFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLDE-ETAGII 177
Query: 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM 311
+E IQGEGG+ A+++FL L++ C + LL+ DEVQ G+GRTG +A++H+ + PD++
Sbjct: 178 IEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI 237
Query: 312 TLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLASK 371
LAK L GG+PIGA L E+VA + G HGSTF G+PL C A V+D++ K
Sbjct: 238 ALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV-------EK 290
Query: 372 LARNPHVKD----------------VRGLGLIIGIEFDVSATPVVDACRDSGLLV-LTAG 414
L PHV++ V+G GL++G+E + V + GLL+ TAG
Sbjct: 291 LL--PHVREVGNYFKEKLKELGKGKVKGRGLMLGLELERECKDYVLKALEKGLLINCTAG 348
Query: 415 KGNVVRLVPPLIISEQELDQAVEILCKTL 443
K V+R +PPLII ++ +D+A+ +L + L
Sbjct: 349 K--VLRFLPPLIIQKEHIDRAISVLREIL 375
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 286 bits (731), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 157/385 (40%), Positives = 224/385 (58%), Gaps = 23/385 (5%)
Query: 71 KLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL 130
+ ++ Y AP + G+G +L+D +G+EY+D + GIAVNALGH + +A+ +QA+
Sbjct: 12 EWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKF 71
Query: 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
H N Y + P + LAK+L+ +FADRVFF N+G EANEAA+K ARKF K
Sbjct: 72 WHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHK--- 128
Query: 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250
+ V+F N+FHGRT+ ++ + Y F P+ + Y +I + LI T AV
Sbjct: 129 SGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALIDD-STCAV 187
Query: 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDI 310
VEPIQGEGG+ A+ FLQ LR+ C+ ALL+FDEVQ G+GRTG L+A+ HYG+ PD+
Sbjct: 188 IVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDL 247
Query: 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370
+T AK L GG P+GA L TE+ A + G HG+T+ G+PL A VL+ I+ P L
Sbjct: 248 LTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNG 307
Query: 371 KLARNPH--------------VKDVRGLGLIIGI----EFDVSATPVVDACRDSGLLVLT 412
R+ +VRGLGL+IG ++ A + +G++VL
Sbjct: 308 VKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLI 367
Query: 413 AGKGNVVRLVPPLIISEQELDQAVE 437
AG GNVVR P L +SE+E+ ++
Sbjct: 368 AG-GNVVRFAPALNVSEEEVTTGLD 391
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 284 bits (726), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 154/393 (39%), Positives = 233/393 (59%), Gaps = 27/393 (6%)
Query: 71 KLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL 130
++++ Y A + GKG +++D +G+EY+D + GIAV ALGH ++A+ Q L
Sbjct: 30 EVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL 89
Query: 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ--RHSNPDSKE 188
H SN++ + P + L ++L+ +FA+RV F N+GTEANE A K AR + RHS +K
Sbjct: 90 WHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTK- 148
Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248
++F N+FHGR++ +++ + Y F P + V + ++ A K + T
Sbjct: 149 ----IIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAV-KAVMDDHTC 203
Query: 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP 308
AV VEPIQGEGG+ +AT EFL+ LRD CD+ ALLVFDEVQCG+GRTG L+A+ HYG+ P
Sbjct: 204 AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTP 263
Query: 309 DIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL 368
DI+T AK L GG P+ A L T+++ASA + G HGST+ G+PL C A A D I+ P L
Sbjct: 264 DILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVL 323
Query: 369 AS-KLARNPHVK-------------DVRGLGLIIGIE----FDVSATPVVDACRDSGLLV 410
R V+ D+RG+GL+IG E + A + A ++G++V
Sbjct: 324 QGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMV 383
Query: 411 LTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
L AG +V+R P L++ E ++ + ++ + +
Sbjct: 384 LNAG-ADVMRFAPSLVVEEADIHEGMQRFAQAV 415
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/392 (39%), Positives = 232/392 (59%), Gaps = 23/392 (5%)
Query: 69 EKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQAN 128
E+ ++ TY R +VL G+G L+D + ++YLD SSGI V ALG+ A + + Q +
Sbjct: 7 EQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVD 66
Query: 129 VLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188
L H SN+YY+ AK L S +RVFF+N+GTE+ E A K ARK+ +
Sbjct: 67 KLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAXKTARKYAFNKGV---- 122
Query: 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248
+F++F +SFHGRT+GAL+LT+ E Y+ PF+P++ GV F +Y +I + KL+ KT
Sbjct: 123 KGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVNE-KTC 181
Query: 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP 308
A+ +E +QGEGGI A K+F + LR CD+ LL+ DE+QCG GR+G +A+EH I P
Sbjct: 182 AIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEHAQILP 241
Query: 309 DIMTLAKPLAGGLPIGAALVTEKVAS-AINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF 367
DI T AK L GL +GA ++ +KVAS ++ GDHGST+ G+PLVC AV +
Sbjct: 242 DIXTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKI 301
Query: 368 LASKLARNPHV--------------KDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVL 411
L + P++ K +GLG G+ D V V+ C+++ LL++
Sbjct: 302 LENVNKLTPYLEQSLDELINEFDFCKKRKGLGFXQGLSLDKSVKVAKVIQKCQENALLLI 361
Query: 412 TAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
+ G+ N +R +PPLI+ ++ +D+ E L K L
Sbjct: 362 SCGE-NDLRFLPPLILQKEHIDEXSEKLRKAL 392
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 282 bits (721), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 240/396 (60%), Gaps = 26/396 (6%)
Query: 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
+ ++EAEK L G YN+ +++ G+G +++DAEG EY+D G V LGHG+ + ++A
Sbjct: 10 RALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEA 69
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVAC--SFADRVFFSNTGTEANEAAIKFARKFQR 180
V QA L + + + E + L A +RVF N+GTEANEAA+KFAR
Sbjct: 70 VKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA--- 126
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
H+ +FV+ F GRTMG+L++T + YR PF P++ V F+ Y ++EA ++
Sbjct: 127 HTG------RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKR 180
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
+ +TAAV +EP+QGEGG+ AT EFL+ R+ + GALL+ DE+Q G+GRTG +A
Sbjct: 181 AVDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA 239
Query: 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360
EH+GI PDI+TLAK L GG+P+G A++ E+VA ++ G HG+TF G+PL A +A +
Sbjct: 240 FEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIR 299
Query: 361 KISN-----------PAFLAS-KLARNPHVKDVRGLGLIIGIEFDVSATPVVDAC-RDSG 407
+ P F+ + +P +++VRG+GL++G+E A P + ++
Sbjct: 300 YLERTRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHR 359
Query: 408 LLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
+L L AG V+R +PPL+I +++L++ VE + L
Sbjct: 360 VLALQAGP-TVIRFLPPLVIEKEDLERVVEAVRAVL 394
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 227 bits (579), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 204/388 (52%), Gaps = 16/388 (4%)
Query: 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
K+++E Y+ P+V++ +G + D EG Y+DL S + GH I A
Sbjct: 1 KDIIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINA 60
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
++DQAN +T S ++S +++ + + V NTG EA E AIK AR++
Sbjct: 61 LIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDV 120
Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
A E + ++FHGRTMGA++++S E Y+ F P++PG+ + YG++EA + I
Sbjct: 121 KKVEANRA-EIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAI 179
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
P TAA +EPIQGE GI FL+ + C L V DE+Q GLGRTG ++A +
Sbjct: 180 TP-NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACD 238
Query: 303 HYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361
+ PD+ L L GG+ PI A + G HGSTF G+PL C +IA L+
Sbjct: 239 WDNVTPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEV 298
Query: 362 ISNPAF------LASKLA------RNPHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLL 409
+ L KL NP + +VRG GL IGIE + A P + + +GLL
Sbjct: 299 LEEEKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGLFIGIELNEPARPYCEQLKAAGLL 358
Query: 410 VLTAGKGNVVRLVPPLIISEQELDQAVE 437
+ NV+R+ PPL+ISE++L+ A +
Sbjct: 359 CKETHE-NVIRIAPPLVISEEDLEWAFQ 385
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 153/407 (37%), Positives = 217/407 (53%), Gaps = 54/407 (13%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS-NMYY 138
P+V+ G+G +YD +G +YLD +SGI VN LG + IK ++Q L H + N +Y
Sbjct: 25 PLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFY 84
Query: 139 SIPQIELAKRLVACS---FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
+IPQ+ELAK+LV S F +VFFSN+GTEA EA+IK + R ++
Sbjct: 85 NIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKY----------IIA 134
Query: 196 FTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGN-------------------- 234
F FHGRT G+++LT SK RS P MPGV V Y N
Sbjct: 135 FLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNR 194
Query: 235 -IEATR-----KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEV 288
IE L+ P + A +F EPIQGEGG K F L+ G LLV DEV
Sbjct: 195 VIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEV 254
Query: 289 QCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAG 347
Q GLGRTG L+A E++ PD++TLAK L GG +PIGA + + + G H +TF G
Sbjct: 255 QMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDL--DFKPGMHSNTFGG 312
Query: 348 SPLVCNAAIAVLDKISNPAFLASKLAR------NPHVKDVRGLGLIIGIEFDVSAT--PV 399
+ L C V+D + + +++ + DVRG+GL G+E++ +
Sbjct: 313 NALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGLADDVRGIGLAWGLEYNEKKVRDRI 372
Query: 400 VDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446
+ GLL+L AG+ + +R++PPL+ISE+E Q ++IL K + V+
Sbjct: 373 IGESFKRGLLLLPAGR-SAIRVIPPLVISEEEAKQGLDILKKVIKVV 418
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 224 bits (572), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 140/409 (34%), Positives = 212/409 (51%), Gaps = 22/409 (5%)
Query: 60 RNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+++++ M E Y+ PVVL GKG +YD E R Y D S + GH D
Sbjct: 8 KSSQDYMNNELTYGAHNYDPIPVVLKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDI 67
Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA-DRVFFSNTGTEANEAAIKFARKF 178
+ A+++QA LT S ++S + + +R + F D+V NTG EA+E A K RK+
Sbjct: 68 LNAMINQAKKLTICSRAFFS-DSLGVCERYLTNLFGYDKVLMMNTGAEASETAYKLCRKW 126
Query: 179 QRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEAT 238
+ E + + + N+F GRT+G ++ ++ + ++ F P +P V Y ++EA
Sbjct: 127 G-YEVKKIPENSAKIIVCNNNFSGRTLGCVSASTDKKCKNNFGPFVPNFLKVPYDDLEAL 185
Query: 239 RKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
K +Q A VEP+QGE G+ + + + C L V DEVQ GLGRTG L
Sbjct: 186 EKELQDPNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGKL 245
Query: 299 WAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPL---VCNA 354
HYG+ PD++ L K L+GG PI A L + V + G+HGST+ G+PL +C
Sbjct: 246 LCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYGGNPLAAAICVE 305
Query: 355 AIAVL---------DKISNPAF--LASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDAC 403
A+ VL DK+ P L +L + V++VRG GL+ IEF V D C
Sbjct: 306 ALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIEFKNDLVNVWDIC 365
Query: 404 ---RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 449
+++GL+ + VRL PPL I++++LD+ EI+ KT+ D N
Sbjct: 366 LKFKENGLITRSV-HDKTVRLTPPLCITKEQLDECTEIIVKTVKFFDDN 413
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/404 (34%), Positives = 205/404 (50%), Gaps = 20/404 (4%)
Query: 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKA 122
++ + E K Y+ PVVL KG +YD + Y D S + GH + + A
Sbjct: 30 EDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNA 89
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
+++QA LT S ++S+P + L D+V NTG EANE A K RK+ +
Sbjct: 90 MINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWG-YE 148
Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
E + V N+F GRT+G ++ ++ + S F P P + V Y ++EA + +
Sbjct: 149 VKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEEL 208
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
+ A VEPIQGE G+ + +LQ + D C L V DEVQ GLGRTG L
Sbjct: 209 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVH 268
Query: 303 HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPL---VCNAAIAV 358
HY + PD++ L K L+GG PI A L + + I G+HGST+ G+PL +C A+ V
Sbjct: 269 HYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNV 328
Query: 359 L---------DKISNPAF--LASKLARNPHVKDVRGLGLIIGIEFDVSATPVVDAC---R 404
L +K+ P L +L + V+DVRG GL+ IEF V+D C +
Sbjct: 329 LINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLK 388
Query: 405 DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448
++GL+ +RL PPL I++++LD+ EI+ KT+ D
Sbjct: 389 ENGLITRDV-HDKTIRLTPPLCITKEQLDECTEIIVKTVKFFDE 431
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 143/428 (33%), Positives = 214/428 (50%), Gaps = 54/428 (12%)
Query: 61 NNKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+NKE+M+ + + G P+ + C+++D EGREYLD + GIAV GH
Sbjct: 3 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV 62
Query: 120 IKAVVDQANVLTHVSNMYYSI-PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA 175
+ AV Q L+H + P +EL + + V FA + TG+EA E A+K A
Sbjct: 63 VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF------ 229
R + S ++F+ ++HGRT LALT K + S +MPG +
Sbjct: 123 RAATKRSGT---------IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173
Query: 230 -----VEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
E I + ++ + P AA+ +EP+QGEGG Y+++ F+Q LR CD+ G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
+L+ DEVQ G GRTG L+A E G+ PD+ T AK +AGG P+ +V A+ G
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAF------LASKLA--------RNPHVKDVRGLGL 386
G T+AG+P+ C AA+ VL L KL ++P + DVRGLG
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 353
Query: 387 IIGIEF---------DVSAT-PVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 435
+I IE D T +V RD GL++L+ G NV+R++ PL I + ++ Q
Sbjct: 354 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
Query: 436 VEILCKTL 443
+EI+ +
Sbjct: 414 LEIISQCF 421
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 142/428 (33%), Positives = 213/428 (49%), Gaps = 54/428 (12%)
Query: 61 NNKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+NKE+M+ + + G P+ + C+++D EGREYLD + GIAV GH
Sbjct: 3 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV 62
Query: 120 IKAVVDQANVLTHVSNMYYSI-PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA 175
+ AV Q L+H + P +EL + + V FA + TG+EA E A+K A
Sbjct: 63 VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF------ 229
R + S ++F+ ++HGRT LALT K + S +MPG +
Sbjct: 123 RAATKRSGT---------IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173
Query: 230 -----VEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
E I + ++ + P AA+ +EP+QGEGG Y+++ F+Q LR CD+ G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
+L+ DE Q G GRTG L+A E G+ PD+ T AK +AGG P+ +V A+ G
Sbjct: 234 IMLIADEAQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAF------LASKLA--------RNPHVKDVRGLGL 386
G T+AG+P+ C AA+ VL L KL ++P + DVRGLG
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 353
Query: 387 IIGIEF---------DVSAT-PVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 435
+I IE D T +V RD GL++L+ G NV+R++ PL I + ++ Q
Sbjct: 354 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
Query: 436 VEILCKTL 443
+EI+ +
Sbjct: 414 LEIISQCF 421
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 208 bits (529), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 142/428 (33%), Positives = 213/428 (49%), Gaps = 54/428 (12%)
Query: 61 NNKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+NKE+M+ + + G P+ + C+++D EGREYLD + GIAV GH
Sbjct: 3 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKV 62
Query: 120 IKAVVDQANVLTHVSNMYYSI-PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA 175
+ AV Q L+H + P +EL + + V FA + TG+EA E A+K A
Sbjct: 63 VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF------ 229
R + S ++F+ ++HGRT LALT K + S +MPG +
Sbjct: 123 RAATKRSGT---------IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173
Query: 230 -----VEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
E I + ++ + P AA+ +EP+QG GG Y+++ F+Q LR CD+ G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
+L+ DEVQ G GRTG L+A E G+ PD+ T AK +AGG P+ +V A+ G
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAF------LASKLA--------RNPHVKDVRGLGL 386
G T+AG+P+ C AA+ VL L KL ++P + DVRGLG
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 353
Query: 387 IIGIEF---------DVSAT-PVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 435
+I IE D T +V RD GL++L+ G NV+R++ PL I + ++ Q
Sbjct: 354 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
Query: 436 VEILCKTL 443
+EI+ +
Sbjct: 414 LEIISQCF 421
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 207 bits (528), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 142/428 (33%), Positives = 213/428 (49%), Gaps = 54/428 (12%)
Query: 61 NNKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119
+NKE+M+ + + G P+ + C+++D EGREYLD + G AV GH
Sbjct: 3 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGQAVLNTGHLHPKV 62
Query: 120 IKAVVDQANVLTHVSNMYYSI-PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA 175
+ AV Q L+H + P +EL + + V FA + TG+EA E A+K A
Sbjct: 63 VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122
Query: 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF------ 229
R + S ++F+ ++HGRT LALT K + S +MPG +
Sbjct: 123 RAATKRSGT---------IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173
Query: 230 -----VEYGNIEATRKLIQ----PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
E I + ++ + P AA+ +EP+QGEGG Y+++ F+Q LR CD+ G
Sbjct: 174 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 233
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD 340
+L+ DEVQ G GRTG L+A E G+ PD+ T AK +AGG P+ +V A+ G
Sbjct: 234 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 341 HGSTFAGSPLVCNAAIAVLDKISNPAF------LASKLA--------RNPHVKDVRGLGL 386
G T+AG+P+ C AA+ VL L KL ++P + DVRGLG
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA 353
Query: 387 IIGIEF---------DVSAT-PVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 435
+I IE D T +V RD GL++L+ G NV+R++ PL I + ++ Q
Sbjct: 354 MIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQG 413
Query: 436 VEILCKTL 443
+EI+ +
Sbjct: 414 LEIISQCF 421
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 200/400 (50%), Gaps = 19/400 (4%)
Query: 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
+ ++ E E K Y+ PV L GKG L+D EGR+Y D S I+ GH +
Sbjct: 39 TSDDIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIV 98
Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
A+ Q + LT S +Y+ E + + +V NTG EA E A K ARK+
Sbjct: 99 NALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGY 158
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
K A + V +F GRT+ A++ ++ F P MPG + + Y ++ A +
Sbjct: 159 TVKGIQKYKA-KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 217
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
+Q AA VEPIQGE G+ +L +R+ C L + DE+Q GL RTG A
Sbjct: 218 ALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLA 277
Query: 301 HEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
++ + PDI+ L K L+GGL P+ A L + + I G+HGST+ G+PL C AIA L
Sbjct: 278 VDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAAL 337
Query: 360 DKI--SNPAFLASKLA---RNPHVK-------DVRGLGLIIGIEF----DVSATPVVDAC 403
+ + N A A KL RN +K VRG GL+ I D A V
Sbjct: 338 EVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRL 397
Query: 404 RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
RD+GLL G+++R PPL+I E EL +++EI+ KT+
Sbjct: 398 RDNGLLA-KPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 144/401 (35%), Positives = 203/401 (50%), Gaps = 21/401 (5%)
Query: 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLD-LSSGIAVNALGHGDADW 119
+ ++ E E K Y+ PV L GKG L+D EGR+Y D LSS AVN GH
Sbjct: 39 TSDDIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQ-GHCHPKI 97
Query: 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ 179
+ A+ Q + LT S +Y+ E + + +V NTG EA E A K ARK+
Sbjct: 98 VNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 157
Query: 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239
K A + V +F GRT+ A++ ++ F P MPG + + Y ++ A
Sbjct: 158 YTVKGIQKYKA-KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALE 216
Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
+ +Q AA VEPIQGE G+ +L +R+ C L + DE+Q GL RTG
Sbjct: 217 RALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL 276
Query: 300 AHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAV 358
A ++ + PDI+ L K L+GGL P+ A L + + I G+HGST+ G+PL C AIA
Sbjct: 277 AVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAA 336
Query: 359 LDKI--SNPAFLASKLA---RNPHVK-------DVRGLGLIIGIEF----DVSATPVVDA 402
L+ + N A A KL RN +K VRG GL+ I D A V
Sbjct: 337 LEVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLR 396
Query: 403 CRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
RD+GLL G+++R PPL+I E EL +++EI+ KT+
Sbjct: 397 LRDNGLLA-KPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 144/398 (36%), Positives = 202/398 (50%), Gaps = 21/398 (5%)
Query: 64 EVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLD-LSSGIAVNALGHGDADWIKA 122
++ E E K Y+ PV L GKG L+D EGR+Y D LSS AVN GH + A
Sbjct: 5 DIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQ-GHCHPKIVNA 63
Query: 123 VVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS 182
+ Q + LT S +Y+ E + + +V NTG EA E A K ARK+
Sbjct: 64 LKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTV 123
Query: 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242
K A + V +F GRT+ A++ ++ F P MPG + + Y ++ A + +
Sbjct: 124 KGIQKYKA-KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERAL 182
Query: 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302
Q AA VEPIQGE G+ +L +R+ C L + DE+Q GL RTG A +
Sbjct: 183 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVD 242
Query: 303 HYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK 361
+ + PDI+ L K L+GGL P+ A L + + I G+HGST+ G+PL C AIA L+
Sbjct: 243 YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV 302
Query: 362 I--SNPAFLASKLA---RNPHVK-------DVRGLGLIIGIEF----DVSATPVVDACRD 405
+ N A A KL RN +K VRG GL+ I D A V RD
Sbjct: 303 LEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRD 362
Query: 406 SGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
+GLL G+++R PPL+I E EL +++EI+ KT+
Sbjct: 363 NGLLA-KPTHGDIIRFAPPLVIKEDELRESIEIINKTI 399
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 138/400 (34%), Positives = 198/400 (49%), Gaps = 19/400 (4%)
Query: 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120
+ ++ E E K + PV L GKG L+D EGR+Y D S I+ GH +
Sbjct: 39 TSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIV 98
Query: 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180
A+ Q + LT S +Y+ E + + +V NTG EA E A K ARK+
Sbjct: 99 NALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGY 158
Query: 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK 240
K A + V +F GRT+ A++ ++ F P MPG + + Y ++ A +
Sbjct: 159 TVKGIQKYKA-KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 217
Query: 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
+Q AA VEPIQGE G+ +L +R+ C L + DE+Q GL RTG A
Sbjct: 218 ALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLA 277
Query: 301 HEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
++ + PDI+ L K L+GGL P+ A L + + I G+H ST+ G+PL C AIA L
Sbjct: 278 VDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAAL 337
Query: 360 DKI--SNPAFLASKLA---RNPHVK-------DVRGLGLIIGIEF----DVSATPVVDAC 403
+ + N A A KL RN +K VRG GL+ I D A V
Sbjct: 338 EVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRL 397
Query: 404 RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
RD+GLL G+++R PPL+I E EL +++EI+ KT+
Sbjct: 398 RDNGLLA-KPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 177 bits (450), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 132/414 (31%), Positives = 189/414 (45%), Gaps = 60/414 (14%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PV + G + DA+G +DL SGIAV +G+ + AV DQ TH M
Sbjct: 61 PVFVVRAGGGIVEDADGNRLIDLGSGIAVTTIGNSAPRVVDAVRDQVEQFTHTCFMVTPY 120
Query: 141 PQI----ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
Q E R+ S R N+G EA E +IK AR R V+F
Sbjct: 121 EQYVAVAEQLNRITPGSGEKRTVLFNSGAEAVENSIKVARAHTRKQ---------AVVAF 171
Query: 197 TNSFHGRTMGALALTSKEH-YRSPFEPVMPGV----------------NFVEYGNIEATR 239
++HGRT +ALT+K Y+S F P P + + G + A R
Sbjct: 172 DYAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPVSYPYRDNLLDKDIATDGELAAER 231
Query: 240 ------KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
K I AAV +EPI GEGG FL L+ C D + + DEVQ G
Sbjct: 232 AINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGFA 291
Query: 294 RTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCN 353
RTG ++A +H + PD++ A +A G P+ A ++ A + G TF G+P+ C
Sbjct: 292 RTGAMFACDHENVEPDLIVTAXGIADGFPLSAVTGRAEIMDAPHTSGLGGTFGGNPVACA 351
Query: 354 AAIAVLDKISNPAFL--ASKLAR------------NPHVKDVRGLGLIIGIEFDVSATPV 399
AA+A ++ I + A ++ R + + DVRG G +I +E S T
Sbjct: 352 AALATIETIERDGMVERARQIERLVMDRLLRLQAADDRLGDVRGRGAMIAMELVKSGTAE 411
Query: 400 VDAC---------RDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTL 443
DA +G++VLT G GNV+RL+PPL IS++ L + ++ILC+ L
Sbjct: 412 PDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTISDELLSEGLDILCQIL 465
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 133/405 (32%), Positives = 187/405 (46%), Gaps = 54/405 (13%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM---Y 137
PV + + G L DA+G + +D SGIAV +G+ + AV Q TH M Y
Sbjct: 51 PVYVVAAGGGVLADADGNQLIDFGSGIAVTTVGNSAPAVVDAVTQQVAAFTHTCFMVTPY 110
Query: 138 YSIPQI-ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
++ E RL R N+G EA E A+K AR + R V F
Sbjct: 111 EGYVKVAEHLNRLTPGDHEKRTALFNSGAEAVENAVKIARAYTRRQ---------AVVVF 161
Query: 197 TNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEYG----------------NIEATR 239
+++HGRT +A+T+K Y+ F P V V ++
Sbjct: 162 DHAYHGRTNLTMAMTAKNQPYKHGFGPFANEVYRVPTSYPFRDGETDGAAAAAHALDLIN 221
Query: 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
K + AAV +EP+ GEGG FL L+ C D GA+ V DEVQ G RTG L+
Sbjct: 222 KQVGADNVAAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTGALF 281
Query: 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
A EH + PD++ AK +AGGLP+ A ++ G G T+ G+PL C AA+AV+
Sbjct: 282 ACEHENVVPDLIVTAKGIAGGLPLSAVTGRAEIMDGPQSGGLGGTYGGNPLACAAALAVI 341
Query: 360 DKISNPAFLA----------SKL----ARNPHVKDVRGLGLIIGIEFDVSATP------- 398
D I +A S+L A +P + +VRG G +I +E T
Sbjct: 342 DTIERENLVARARAIGETMLSRLGALAAADPRIGEVRGRGAMIAVELVKPGTTEPDADLT 401
Query: 399 --VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILC 440
V A GL+VLT G GNV+R +PPL + + LD+ ++IL
Sbjct: 402 KRVAAAAHAQGLVVLTCGTYGNVLRFLPPLSMPDHLLDEGLDILA 446
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 192/420 (45%), Gaps = 60/420 (14%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
G PV G + D +G +DL SGIAV +G+ ++AV Q TH
Sbjct: 38 GVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTC 97
Query: 135 NMYYS----IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
M + E RL R N+G+EA E A+K AR + +PA
Sbjct: 98 FMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSH-------THKPA 150
Query: 191 TEFVSFTNSFHGRTMGALALTSK-------------EHYRSP----FEPVMPGVNFVEYG 233
V+F +++HGRT +ALT+K E YR+P F G G
Sbjct: 151 V--VAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDG 208
Query: 234 NIEATR------KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287
+ A R K I AAV +EPIQGEGG FL L D C + + DE
Sbjct: 209 ELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADE 268
Query: 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAG 347
VQ G RTG ++A EH GI PD++ A +AGGLP+ A ++ + + G T+ G
Sbjct: 269 VQTGFARTGAMFACEHEGIDPDLIVTAXGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGG 328
Query: 348 SPLVCNAAIAVLDKISNPAFLA----------SKLAR----NPHVKDVRGLGLIIGIEFD 393
+P+ C AA+A ++ I + +A +L R + + DVRG G +I +E
Sbjct: 329 NPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELV 388
Query: 394 VSATPVVDA---------CRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTL 443
+ T DA +G++VL+ G GNVVR +PPL I + L++ +++L + L
Sbjct: 389 KAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVL 448
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 191/409 (46%), Gaps = 61/409 (14%)
Query: 82 VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP 141
V A +GC + D +G+ YLD SG+ G+G + +A Q L++ P
Sbjct: 33 TVGAKAEGCWVEDIQGKRYLDGXSGLWCVNSGYGRKELAEAAYKQLQTLSYFPXSQSHEP 92
Query: 142 QIELAKRLVACSFADRV-FFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSF 200
I+LA++L + V FFSN+G+EANE A K AR++ + +F S +
Sbjct: 93 AIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHR---YKFXSRYRGY 149
Query: 201 HGRTMGALALTSKEHYRSPFEPV--------------MPGVNFVEYGNIEATRKL----- 241
HG T A T + R +EP PG+ ++E +++
Sbjct: 150 HGNTXATXAATGQAQRRYQYEPFASGFLHVTPPDCYRXPGIERENIYDVECVKEVDRVXT 209
Query: 242 IQPGKTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
+ +T A F+ EPI GGI A +++ + + + C GALL+ DEV CG GRTG +
Sbjct: 210 WELSETIAAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFG 269
Query: 301 HEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN------YGDHGSTFAGSPLVCN 353
+Y + PDI+T AK + LP+ A V ++ A + H +TF G+P C
Sbjct: 270 FXNYDVKPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACA 329
Query: 354 AAIAVLDKISNPAF--------------LASKLARNPHVKDVRGLGLIIGIEF------- 392
A+ L+ I N L ++ +P V D+RG GL++GIE
Sbjct: 330 LALKNLEIIENENLIERSAQXGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETK 389
Query: 393 ----DVSATPVVDACRDSGLLV-----LTAGKGNVVRLVPPLIISEQEL 432
+ VV+AC++ GL++ TAG N++ L PPL+IS +E+
Sbjct: 390 EPIDNDKIASVVNACKEKGLIIGRNGXTTAGYNNILTLAPPLVISSEEI 438
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 205/415 (49%), Gaps = 55/415 (13%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
G + APV G + DA+G ++DL +GIAV +G A+ DQA TH
Sbjct: 41 GVGSTAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTC 100
Query: 135 NMYYSIPQ-IELAKRLVACSFAD---RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
M Q +++A+ L A + D R N+G EA E AIK AR + PA
Sbjct: 101 FMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARL-------ATGRPA 153
Query: 191 TEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFV--------EYG--NIEATR 239
V+F N++HGRT +ALT+K Y+S F P P V + E G EA R
Sbjct: 154 --VVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAAR 211
Query: 240 KLIQPGKT-------AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292
+ I +T AA+ +EPIQGEGG FL L + G + + DEVQ G
Sbjct: 212 RAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGF 271
Query: 293 GRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVC 352
RTG +A EH GI PDI+T+A +AGG+P+ A ++ A+ G G T+ G+P+ C
Sbjct: 272 ARTGAWFASEHEGIVPDIVTMAXGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTC 331
Query: 353 NAAIA---VLDKISNP-------AFLASKLARNPH----VKDVRGLGLIIGIEF------ 392
AA+A V+ ++ P A + S+L+ + +VRG G ++ IE
Sbjct: 332 AAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTL 391
Query: 393 --DVSATPVVDA-CRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTL 443
D + T + A G+L+LT G GNV+RL+PPL+I + LD+ + L +
Sbjct: 392 EPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDII 446
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 158 bits (399), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 126/423 (29%), Positives = 191/423 (45%), Gaps = 69/423 (16%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
GT+ P+++ KG +YDA+GR LD +SG LGH + + + + A L H+
Sbjct: 20 GTFE--PMIIERAKGSFVYDADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGKLDHLF 77
Query: 135 NMYYSIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
+ S P ++LA RL + DR +TG E+NEAAI+ A+ E
Sbjct: 78 SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGK---------YE 128
Query: 193 FVSFTNSFHGRT-------------------MGALALTSKEHYRSPFEP--VMPGVNFVE 231
V F S+HG T +G+ A+ + YR FE + ++
Sbjct: 129 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 188
Query: 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
Y R+ G AA EPI GGI ++ L+ C+ G LL+ DE Q G
Sbjct: 189 YAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTG 246
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT----EKVASAINYGDHGSTFAG 347
+GRTG ++A + G+ PDI+TL+K L GLP+ AA+VT E+ A + Y + +T
Sbjct: 247 VGRTGTMFACQRDGVTPDILTLSKTLGAGLPL-AAIVTSAAIEERAHELGYLFY-TTHVS 304
Query: 348 SPLVCNAAIAVLDKISNPAFLASK--------------LARNPHVKDVRGLGLIIGIEF- 392
PL + VLD + +A + R + DVRG GL++G+E
Sbjct: 305 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIV 364
Query: 393 ---------DVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILC 440
D + C + GL +V G G V R+ PPL +SE E+D + +L
Sbjct: 365 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG 424
Query: 441 KTL 443
+ +
Sbjct: 425 QAI 427
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 157 bits (398), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 126/423 (29%), Positives = 191/423 (45%), Gaps = 69/423 (16%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
GT+ P+++ KG +YDA+GR LD +SG LGH + + + + A L H+
Sbjct: 22 GTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF 79
Query: 135 NMYYSIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
+ S P ++LA RL + DR +TG E+NEAAI+ A+ E
Sbjct: 80 SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGK---------YE 130
Query: 193 FVSFTNSFHGRT-------------------MGALALTSKEHYRSPFEP--VMPGVNFVE 231
V F S+HG T +G+ A+ + YR FE + ++
Sbjct: 131 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 190
Query: 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
Y R+ G AA EPI GGI ++ L+ C+ G LL+ DE Q G
Sbjct: 191 YAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTG 248
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT----EKVASAINYGDHGSTFAG 347
+GRTG ++A + G+ PDI+TL+K L GLP+ AA+VT E+ A + Y + +T
Sbjct: 249 VGRTGTMFACQRDGVTPDILTLSKTLGAGLPL-AAIVTSAAIEERAHELGYLFY-TTHVS 306
Query: 348 SPLVCNAAIAVLDKISNPAFLASK--------------LARNPHVKDVRGLGLIIGIEF- 392
PL + VLD + +A + R + DVRG GL++G+E
Sbjct: 307 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIV 366
Query: 393 ---------DVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILC 440
D + C + GL +V G G V R+ PPL +SE E+D + +L
Sbjct: 367 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG 426
Query: 441 KTL 443
+ +
Sbjct: 427 QAI 429
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/423 (29%), Positives = 191/423 (45%), Gaps = 69/423 (16%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
GT+ P+++ KG +YDA+GR LD +SG LGH + + + + A L H+
Sbjct: 22 GTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF 79
Query: 135 NMYYSIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
+ S P ++LA RL + DR +TG E+NEAAI+ A+ E
Sbjct: 80 SGMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGK---------YE 130
Query: 193 FVSFTNSFHGRT-------------------MGALALTSKEHYRSPFEP--VMPGVNFVE 231
V F S+HG T +G+ A+ + YR FE + ++
Sbjct: 131 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 190
Query: 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
Y R+ G AA EPI GGI ++ L+ C+ G LL+ DE Q G
Sbjct: 191 YAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTG 248
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT----EKVASAINYGDHGSTFAG 347
+GRTG ++A + G+ PDI+TL+K L GLP+ AA+VT E+ A + Y + +T
Sbjct: 249 VGRTGTMFACQRDGVTPDILTLSKTLGAGLPL-AAIVTSAAIEERAHELGYLFY-TTHVS 306
Query: 348 SPLVCNAAIAVLDKISNPAFLASK--------------LARNPHVKDVRGLGLIIGIEF- 392
PL + VLD + +A + R + DVRG GL++G+E
Sbjct: 307 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIV 366
Query: 393 ---------DVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILC 440
D + C + GL +V G G V R+ PPL +SE E+D + +L
Sbjct: 367 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG 426
Query: 441 KTL 443
+ +
Sbjct: 427 QAI 429
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/423 (29%), Positives = 191/423 (45%), Gaps = 69/423 (16%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
GT+ P+++ KG +YDA+GR LD +SG LGH + + + + A L H+
Sbjct: 21 GTFE--PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF 78
Query: 135 NMYYSIPQIELAKRL--VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192
+ S P ++LA RL + DR +TG E+NEAAI+ A+ E
Sbjct: 79 SGMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGK---------YE 129
Query: 193 FVSFTNSFHGRT-------------------MGALALTSKEHYRSPFEP--VMPGVNFVE 231
V F S+HG T +G+ A+ + YR FE + ++
Sbjct: 130 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 189
Query: 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
Y R+ G AA EPI GGI ++ L+ C+ G LL+ DE Q G
Sbjct: 190 YAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTG 247
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVT----EKVASAINYGDHGSTFAG 347
+GRTG ++A + G+ PDI+TL+K L GLP+ AA+VT E+ A + Y + +T
Sbjct: 248 VGRTGTMFACQRDGVTPDILTLSKTLGAGLPL-AAIVTSAAIEERAHELGYLFY-TTHVS 305
Query: 348 SPLVCNAAIAVLDKISNPAFLASK--------------LARNPHVKDVRGLGLIIGIEF- 392
PL + VLD + +A + R + DVRG GL++G+E
Sbjct: 306 DPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIV 365
Query: 393 ---------DVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILC 440
D + C + GL +V G G V R+ PPL +SE E+D + +L
Sbjct: 366 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLG 425
Query: 441 KTL 443
+ +
Sbjct: 426 QAI 428
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 200/424 (47%), Gaps = 63/424 (14%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
Y+ P+++ SG G K+ D G+EY D S + +N GH + A+ Q + H + +
Sbjct: 23 YDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL 82
Query: 137 -YYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
++P +LA+ L+ S RVF+S++G EA E A+K A ++ ++ K+ +F
Sbjct: 83 GMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ---KF 139
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVM--------PGVNFVEYGNIEATR------ 239
++ N +HG T+GA+++ S E + + P+M P V E G+ + R
Sbjct: 140 IAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRE 199
Query: 240 --KLIQPG--KTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
+L++ + AA+ +E +QG G+ + +L +R+ C L++ DEV G GR
Sbjct: 200 LAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGR 259
Query: 295 TGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--------HGSTF 345
TG ++A EH + PD+M K + GG LPI TE + A Y D HG ++
Sbjct: 260 TGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAF-YDDYENLKTFFHGHSY 318
Query: 346 AGSPLVCNAAI-------------AVLDKISNPAFLASKLARNPHVKDVRGLGLIIGIEF 392
G+ L C A+ V +K FL L PHV D+R LG + G E
Sbjct: 319 TGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAEL 378
Query: 393 DVSAT-------------PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 439
S V R+ G+ LT G+V+ +PPL + +EL + V I+
Sbjct: 379 VRSKETKEPYPADRRIGYKVSLKMRELGM--LTRPLGDVIAFLPPLASTAEELSEMVAIM 436
Query: 440 CKTL 443
+ +
Sbjct: 437 KQAI 440
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 200/424 (47%), Gaps = 63/424 (14%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
Y+ P+++ SG G K+ D G+EY D S + +N GH + A+ Q + H + +
Sbjct: 23 YDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL 82
Query: 137 -YYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
++P +LA+ L+ S RVF+S++G EA E A+K A ++ ++ K+ +F
Sbjct: 83 GMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ---KF 139
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVM--------PGVNFVEYGNIEATR------ 239
++ N +HG T+GA+++ S E + + P+M P V E G+ + R
Sbjct: 140 IAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQXLRE 199
Query: 240 --KLIQPG--KTAAVFVEP-IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
+L++ + AA+ +E +QG G+ + +L +R+ C L++ DEV G GR
Sbjct: 200 LAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGR 259
Query: 295 TGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD--------HGSTF 345
TG ++A EH + PD+M K + GG LPI TE + A Y D HG ++
Sbjct: 260 TGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAF-YDDYENLKTFFHGHSY 318
Query: 346 AGSPLVCNAAI-------------AVLDKISNPAFLASKLARNPHVKDVRGLGLIIGIEF 392
G+ L C A+ V +K FL L PHV D+R LG + G E
Sbjct: 319 TGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAEL 378
Query: 393 DVSAT-------------PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEIL 439
S V R+ G+ LT G+V+ +PPL + +EL + V I+
Sbjct: 379 VRSKETKEPYPADRRIGYKVSLKMRELGM--LTRPLGDVIAFLPPLASTAEELSEMVAIM 436
Query: 440 CKTL 443
+ +
Sbjct: 437 KQAI 440
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 204/421 (48%), Gaps = 61/421 (14%)
Query: 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134
G + PV + G + D +G ++DL SGIAV ++G D + AV + A TH
Sbjct: 41 GVASGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTC 100
Query: 135 NMYYS----IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190
M + E RL A R N+G EA E A+K AR + D+
Sbjct: 101 FMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVAR---LATGRDA---- 153
Query: 191 TEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFV-----------EYGNIEAT 238
V+F +++HGRT +ALT+K Y++ F P P V + E EA
Sbjct: 154 --VVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAA 211
Query: 239 RKLI-----QPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291
++ I Q G + AA+ +EPIQGEGG + FL L + + G + + DEVQ G
Sbjct: 212 KRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSG 271
Query: 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLV 351
RTG +A +H G+ PDI+T+AK +AGGLP+ A + A++ G G T+ G+P+
Sbjct: 272 FCRTGEWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVA 331
Query: 352 CNAAIAVLDKISNPAF-----------------LASKLAR--NPHVKDVRGLGLIIGIEF 392
C AA+A +D + LA++L+ V D+RG G ++ IE
Sbjct: 332 CAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIEL 391
Query: 393 --DVSATP-------VVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKT 442
S P V AC G+++LT G GNV+RL+PPL+IS++ L +E+L
Sbjct: 392 VQPGSKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAA 451
Query: 443 L 443
+
Sbjct: 452 I 452
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 113/416 (27%), Positives = 191/416 (45%), Gaps = 59/416 (14%)
Query: 83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ 142
V+ G+G L+D+EG + +D +G+ +G+G D+ +A Q L + + +
Sbjct: 35 VMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHP 94
Query: 143 --IELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
+EL+ L + A DRVF++N+G+E+ + I+ R R+ + K + N
Sbjct: 95 AVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVR---RYWDVQGKPEKKTLIGRWN 151
Query: 199 SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE---------------YGNIEA---TRK 240
+HG T+G +L ++ + +PG+ +E +G + A K
Sbjct: 152 GYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEK 211
Query: 241 LIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL 298
+++ G K AA EPIQG GG+ + + C LLV DEV CG GRTG
Sbjct: 212 ILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEW 271
Query: 299 WAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG---DHGSTFAGSPLVCNA 354
+ H+H+G PD+ T AK L+ G LPIGA V ++VA + G +HG T++G P+
Sbjct: 272 FGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAV 331
Query: 355 AIAVLDKISNPAFLA---------------SKLARNPHVKDVRGLGLIIGI--------- 390
A A + + + + +R HV DVRG+G++
Sbjct: 332 AHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKR 391
Query: 391 EFDVSATPVVDACRDSGL---LVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
E + CRD L++ A ++V PPL+++ E+D+ + + + L
Sbjct: 392 ELFPDFGEIGTLCRDIFFRNNLIMRACGDHIVS-APPLVMTRAEVDEMLAVAERCL 446
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 114/413 (27%), Positives = 196/413 (47%), Gaps = 55/413 (13%)
Query: 83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS--I 140
V+ +G L D+EG E LD +G+ +G+G + + Q L + + + + +
Sbjct: 40 VITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHV 99
Query: 141 PQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
P I LA++L + D VFF+ G+EAN+ I+ R + ++ K T +S N
Sbjct: 100 PAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEK---TVIISRKN 156
Query: 199 SFHGRTMGALAL--TSKEHYRSPFEPVMPGVN----FVEYGNI-----------EATRKL 241
++HG T+ + AL + H +S P + +N + E G++ E +
Sbjct: 157 AYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAI 216
Query: 242 IQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299
++ G + AA EP+QG GG+ A + ++ CD LL+ DEV CG GRTG +
Sbjct: 217 LELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWF 276
Query: 300 AHEHYGIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAI 356
+ GI P IMT+AK L+ G PIG ++V ++VA I + HG T++G P+ A+
Sbjct: 277 GTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVAL 336
Query: 357 A---------VLDKISNPA--FLASK---LARNPHVKDVRGLGLIIGI----------EF 392
+LD + N A +L K L +P V + + +G++ I +F
Sbjct: 337 ENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKF 396
Query: 393 DVSATPVVDACRDSGLL--VLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443
+ CR+ ++ G+ + + PPL+I+ E+D+ + K+L
Sbjct: 397 ASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVITPAEIDEMFVRIRKSL 449
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 129/400 (32%), Positives = 195/400 (48%), Gaps = 61/400 (15%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F++
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
F N +HG T GA+++ ++ S ++ +P F V + + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
L+A EH I PDI+ L K L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIEFDVSAT 397
C AA A L + + + L +L AR+ V DVR LG I +E +
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVE---TTH 372
Query: 398 PVVDACRDSGLL---VLTAGKGNVVRLVPPLIISEQELDQ 434
PV A + V A G ++ L+PP II Q+L +
Sbjct: 373 PVNMAALQKFFVEQGVWIAPFGKLIYLMPPYIILPQQLQR 412
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 127/399 (31%), Positives = 196/399 (49%), Gaps = 59/399 (14%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F++
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
F N +HG T GA+++ ++ S ++ +P F V + + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
L+A EH I PDI+ L K L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIE--FDVS 395
C AA A L + + + L +L AR+ V DVR LG I +E V+
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
+ + G+ + GK ++ L+PP II Q+L +
Sbjct: 376 MAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 129/400 (32%), Positives = 198/400 (49%), Gaps = 61/400 (15%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGEI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSK-EPATEFV 194
P IEL ++LVA + + VF +++G+ A E A+K A ++ D+K E F+
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYW-----DAKGEARDRFL 138
Query: 195 SFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIE 236
+F N +HG T GA+++ ++ S ++ +P F V + +
Sbjct: 139 TFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLM 198
Query: 237 ATRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295
A + + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G GRT
Sbjct: 199 AAHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT 254
Query: 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSP 349
G L+A EH I PDI+ L K L GG + + A L T +VA I+ G+ HG TF G+P
Sbjct: 255 GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGPTFMGNP 314
Query: 350 LVCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIE--FDV 394
L C AA A L + + + L +L AR+ V DVR LG I +E V
Sbjct: 315 LACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPV 374
Query: 395 SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
+ + + G+ + GK ++ L+PP II Q+L +
Sbjct: 375 NMAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 116/427 (27%), Positives = 182/427 (42%), Gaps = 67/427 (15%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
+ R VV+ G+G + D GR YLD +SG+ G I+A Q +
Sbjct: 38 HQRGTVVVTHGEGPYIVDVHGRRYLDANSGLWNMVAGFDHKGLIEAAKAQYDRFPGYHAF 97
Query: 137 Y--YSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPAT 191
+ S + L+++LV S D RVF++N+G+EAN+ +K P ++ T
Sbjct: 98 FGRMSDQTVMLSEKLVEVSPFDNGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILT 157
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV------NFVEYGN----------- 234
+ N++HG T + ++T K Y S F +PG ++ YG
Sbjct: 158 RW----NAYHGVTAVSASMTGKP-YNSVFGLPLPGFIHLTCPHYWRYGEEGETEAQFVAR 212
Query: 235 ----IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
+E T A F EP+ G GG+ K + Q + ++ DEV C
Sbjct: 213 LARELEDTITREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVIC 272
Query: 291 GLGRTGYLWAHEHYGIFPD-IMTLAKPLAGGLPIGAALV-------TEKVASAINYGDHG 342
G GRTG W Y PD I++ AG P+GA ++ E AI HG
Sbjct: 273 GFGRTGNTWGCLTYDFMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHG 332
Query: 343 STFAGSPLVCNAAIAVLDKISN-----------PAFLA--SKLARNPHVKDVRGLGLIIG 389
T +G P+ C A+ +D + N P F A ++A P++ + RG+G +
Sbjct: 333 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEAGLKRIADRPNIGEYRGIGFMWA 392
Query: 390 IE----------FDVS---ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV 436
+E FD + + + + C D GL+ G+ V L PP I++E ++D+
Sbjct: 393 LEAVKDKPTKTPFDANLSVSERIANTCTDLGLICRPLGQSIV--LCPPFILTEAQMDEMF 450
Query: 437 EILCKTL 443
E L K L
Sbjct: 451 EKLEKAL 457
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 127/399 (31%), Positives = 195/399 (48%), Gaps = 59/399 (14%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F++
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
F N FHG T GA+++ ++ S ++ +P F V + + A
Sbjct: 140 FRNGFHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
L+A EH I PDI+ L L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIE--FDVS 395
C AA A L + + + L +L AR+ V DVR LG I +E V+
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
+ + G+ + GK ++ L+PP II Q+L +
Sbjct: 376 MAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/399 (31%), Positives = 195/399 (48%), Gaps = 59/399 (14%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F++
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
F N +HG T GA+++ ++ S ++ +P F V + + A
Sbjct: 140 FRNGYHGNTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
L+A EH I PDI+ L L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIE--FDVS 395
C AA A L + + + L +L AR+ V DVR LG I +E V+
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
+ + G+ + GK ++ L+PP II Q+L +
Sbjct: 376 MAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 126/399 (31%), Positives = 195/399 (48%), Gaps = 59/399 (14%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F++
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
F N +HG T GA+++ ++ S ++ +P F V + + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G GRTG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
L+A EH I PDI+ L L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIE--FDVS 395
C AA A L + + + L +L AR+ V DVR LG I +E V+
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
+ + G+ + GK ++ L+PP II Q+L +
Sbjct: 376 MAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 126/399 (31%), Positives = 195/399 (48%), Gaps = 59/399 (14%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F++
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
F N +HG T GA+++ ++ S ++ +P F V + + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G G TG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGATG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
L+A EH I PDI+ L K L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIE--FDVS 395
C AA A L + + + L +L AR+ V DVR LG I +E V+
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
+ + G+ + GK ++ L+PP II Q+L +
Sbjct: 376 MAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 125/399 (31%), Positives = 195/399 (48%), Gaps = 59/399 (14%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
PVV S +GC+L ++GR +D S G+ A+ Q + ++HV M+ I
Sbjct: 28 PVV--SAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHV--MFGGI 83
Query: 141 ---PQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P IEL ++LVA + + VF +++G+ A E A+K A ++ + E F++
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG----EARQRFLT 139
Query: 196 FTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNF-----------------VEYGNIEA 237
F N +HG T GA+++ ++ S ++ +P F V + + A
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA 199
Query: 238 TRKLIQPGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
+ + AAV +EPI QG GG+ E+L+ +R CD G LL+ DE+ G G+TG
Sbjct: 200 AHR----HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKTG 255
Query: 297 YLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPL 350
L+A EH I PDI+ L L GG + + A L T +VA I+ G+ HG TF G+PL
Sbjct: 256 KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPL 315
Query: 351 VCNAAIAVLDKISNPAF----------LASKL--ARNPH-VKDVRGLGLIIGIE--FDVS 395
C AA A L + + + L +L AR+ V DVR LG I +E V+
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQ 434
+ + G+ + GK ++ L+PP II Q+L +
Sbjct: 376 MAALQKFFVEQGVWIRPFGK--LIYLMPPYIILPQQLQR 412
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 169/381 (44%), Gaps = 50/381 (13%)
Query: 94 DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI---PQIELAKRLV 150
D + E LD S GHG +A+ Q V+ HV M+ + P LAK LV
Sbjct: 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHV--MFGGLTHEPAARLAKLLV 128
Query: 151 ACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL 208
+ A D VFFS++G+ + E A K A ++ R K +++ +HG T A+
Sbjct: 129 DITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR---RLMTWRGGYHGDTFLAM 185
Query: 209 A----------LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI-QG 257
+ L + F P +P Y + G+ AAV VEP+ QG
Sbjct: 186 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQG 245
Query: 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL 317
GG+ +L LRD C LL+FDE+ G GRTG L+A +H G+ PDIM + K L
Sbjct: 246 AGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKAL 305
Query: 318 AGG-LPIGAALVTEKVASAINYGD-----HGSTFAGSPLVCNAAIAVLDKISNPAF---- 367
GG L + A L T VA I+ G HG TF +PL C ++A ++ + +
Sbjct: 306 TGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRI 365
Query: 368 --LASKLARN-------PHVKDVRGLGLIIGIEFD-----VSATPVVDACRDSGLLVLTA 413
LA+ L P V DVR G I IE D ATP A D G V
Sbjct: 366 TELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLAVATP---AALDRG--VWLR 420
Query: 414 GKGNVVRLVPPLIISEQELDQ 434
N+V +PP I + E+ Q
Sbjct: 421 PFRNLVYAMPPYICTPAEITQ 441
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 125/422 (29%), Positives = 194/422 (45%), Gaps = 68/422 (16%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS- 139
P+ ++ G+G +L + GRE +DLS +LG+G + AV A + + S
Sbjct: 39 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 98
Query: 140 IPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P + LA+RL+A SF +++F ++G++ANEAA + K S ++
Sbjct: 99 APAVTLAERLLA-SFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSG---------VIA 148
Query: 196 FTNSFHGRTMGALALTSKE--------------HYRSPFEPVM--PGVNFVEYGNIEATR 239
F ++HG T+G++A + Y P+ P P + + T
Sbjct: 149 FAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAIL---TLLTE 205
Query: 240 KL--IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
KL + G A F+EPIQ +GG+ FL+ D C G L+V DEV+ GL R+G
Sbjct: 206 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR 265
Query: 298 LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKV---ASAINYGDHGSTFAGSPLVCNA 354
L EH G PDI+ L K L GGLP+ A + ++ ASA T G+P+ A
Sbjct: 266 LHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAM----QTLHGNPISAAA 321
Query: 355 AIAVLDKISN---PAF-----------LASKLARNPHVKDVRGLGLIIGIEF-------- 392
+AVL+ I PA L+ R+P + D+RG GL G+E
Sbjct: 322 GLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSRE 381
Query: 393 --DVSATPVVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 449
++ GL+V G GNV+ PPL I+E ++ +A+++L + L +
Sbjct: 382 PARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSAV 441
Query: 450 SN 451
SN
Sbjct: 442 SN 443
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/427 (27%), Positives = 180/427 (42%), Gaps = 67/427 (15%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM 136
+ R VV+ G+G + D GR YLD +SG+ G I A Q
Sbjct: 40 HQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAF 99
Query: 137 Y--YSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPAT 191
+ S + L+++LV S D RVF++N+G+EAN+ +K P ++ T
Sbjct: 100 FGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILT 159
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV------NFVEYGN----------- 234
+ N++HG T + ++T K Y S F +PG ++ YG
Sbjct: 160 RW----NAYHGVTAVSASMTGKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVAR 214
Query: 235 ----IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
+E T + A F EP+ G GG+ K + Q + ++ DEV C
Sbjct: 215 LARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVIC 274
Query: 291 GLGRTGYLWAHEHYGIFPDIMTLAKPL-AGGLPIGAALV-------TEKVASAINYGDHG 342
G GRTG W Y PD + +K L AG P+GA ++ E AI HG
Sbjct: 275 GFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHG 334
Query: 343 STFAGSPLVCNAAIAVLDKISNPAF------LASK-------LARNPHVKDVRGLGLIIG 389
T +G P+ C A+ +D + N LA + +A P++ + RG+G +
Sbjct: 335 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWA 394
Query: 390 IEF---DVSATP----------VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV 436
+E S TP + + C D GL+ G+ V L PP I++E ++D+
Sbjct: 395 LEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQS--VVLCPPFILTEAQMDEMF 452
Query: 437 EILCKTL 443
+ L K L
Sbjct: 453 DKLEKAL 459
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 125/422 (29%), Positives = 194/422 (45%), Gaps = 68/422 (16%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS- 139
P+ ++ G+G +L + GRE +DLS +LG+G + AV A + + S
Sbjct: 26 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 140 IPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P + LA+RL+A SF +++F ++G++ANEAA + K S ++
Sbjct: 86 APAVTLAERLLA-SFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSG---------VIA 135
Query: 196 FTNSFHGRTMGALALTSKE--------------HYRSPFEPVM--PGVNFVEYGNIEATR 239
F ++HG T+G++A + Y P+ P P + + T
Sbjct: 136 FAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAIL---TLLTE 192
Query: 240 KL--IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
KL + G A F+EPIQ +GG+ FL+ D C G L+V DEV+ GL R+G
Sbjct: 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR 252
Query: 298 LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKV---ASAINYGDHGSTFAGSPLVCNA 354
L EH G PDI+ L K L GGLP+ A + ++ ASA T G+P+ A
Sbjct: 253 LHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAM----QTLHGNPISAAA 308
Query: 355 AIAVLDKISN---PAF-----------LASKLARNPHVKDVRGLGLIIGIEF-------- 392
+AVL+ I PA L+ R+P + D+RG GL G+E
Sbjct: 309 GLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSRE 368
Query: 393 --DVSATPVVDACRDSGLLVLTAG-KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 449
++ GL+V G GNV+ PPL I+E ++ +A+++L + L +
Sbjct: 369 PARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSELSAV 428
Query: 450 SN 451
SN
Sbjct: 429 SN 430
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 169/381 (44%), Gaps = 50/381 (13%)
Query: 94 DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI---PQIELAKRLV 150
D + E LD S GHG +A+ Q V+ HV M+ + P LAK LV
Sbjct: 51 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHV--MFGGLTHEPAARLAKLLV 108
Query: 151 ACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL 208
+ A D VFFS++G+ + E A K A ++ R K +++ +HG T A+
Sbjct: 109 DITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR---RLMTWRGGYHGDTFLAM 165
Query: 209 A----------LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI-QG 257
+ L + F P +P Y + G+ AAV VEP+ QG
Sbjct: 166 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQG 225
Query: 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL 317
GG+ +L LRD C LL+FDE+ G GRTG L+A +H G+ PDIM + K L
Sbjct: 226 AGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKAL 285
Query: 318 AGG-LPIGAALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAF---- 367
GG L + A L T VA I+ G G+ TF +PL C ++A ++ + +
Sbjct: 286 TGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRI 345
Query: 368 --LASKLARN-------PHVKDVRGLGLIIGIEFD-----VSATPVVDACRDSGLLVLTA 413
LA+ L P V DVR G I IE D ATP A D G V
Sbjct: 346 TELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLAVATP---AALDRG--VWLR 400
Query: 414 GKGNVVRLVPPLIISEQELDQ 434
N+V +PP I + E+ Q
Sbjct: 401 PFRNLVYAMPPYICTPAEITQ 421
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 115/427 (26%), Positives = 178/427 (41%), Gaps = 67/427 (15%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVS 134
+ R VV+ G+G + D GR YLD +SG+ G I A Q H +
Sbjct: 46 HQRGTVVVTHGEGPYIVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAKAQYERFPGYHAA 105
Query: 135 NMYYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPAT 191
S + L+++LV S D RVF++N+G+EAN+ +K P ++ T
Sbjct: 106 FGKMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILT 165
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV------NFVEYGN----------- 234
+ N++HG T + ++T Y S F +PG ++ YG
Sbjct: 166 RW----NAYHGATAVSASMTGFP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVAR 220
Query: 235 ----IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
+E T + A F EP+ G GG+ K + Q + ++ DEV C
Sbjct: 221 LARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVC 280
Query: 291 GLGRTGYLWAHEHYGIFPD-IMTLAKPLAGGLPIGAALV-------TEKVASAINYGDHG 342
G GRTG W Y PD I++ AG P+GA ++ E AI HG
Sbjct: 281 GFGRTGNTWGCVTYDFTPDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHG 340
Query: 343 STFAGSPLVCNAAIAVLDKISN-----------PAF--LASKLARNPHVKDVRGLGLIIG 389
T +G P+ C A+ +D + N P F +A P++ + RG+G +
Sbjct: 341 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWA 400
Query: 390 IEF---DVSATP----------VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV 436
+E S TP + + C D GL+ G+ V L PP I++E ++D+
Sbjct: 401 LEAVKDKASKTPFDGNLSVSERIANTCTDLGLICFPLGQS--VVLCPPFILTEAQMDEMF 458
Query: 437 EILCKTL 443
+ L K L
Sbjct: 459 DKLEKAL 465
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 169/381 (44%), Gaps = 50/381 (13%)
Query: 94 DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI---PQIELAKRLV 150
D + E LD S GHG +A+ Q V+ HV M+ + P LAK LV
Sbjct: 76 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHV--MFGGLTHEPAARLAKLLV 133
Query: 151 ACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL 208
+ A D VFFS++G+ + E A K A ++ R K +++ +HG T A+
Sbjct: 134 DITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR---RLMTWRGGYHGDTFLAM 190
Query: 209 A----------LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPI-QG 257
+ L + F P +P Y + G+ AAV VEP+ QG
Sbjct: 191 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQG 250
Query: 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPL 317
GG+ +L LRD C LL+FDE+ G GRTG L+A +H G+ PDIM + K L
Sbjct: 251 AGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKAL 310
Query: 318 AGG-LPIGAALVTEKVASAINYGDHGS-----TFAGSPLVCNAAIAVLDKISNPAF---- 367
GG L + A L T VA I+ G G+ TF +PL C ++A ++ + +
Sbjct: 311 TGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRI 370
Query: 368 --LASKLARN-------PHVKDVRGLGLIIGIEFD-----VSATPVVDACRDSGLLVLTA 413
LA+ L P V DVR G I IE D ATP A D G V
Sbjct: 371 TELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLAVATP---AALDRG--VWLR 425
Query: 414 GKGNVVRLVPPLIISEQELDQ 434
N+V +PP I + E+ Q
Sbjct: 426 PFRNLVYAMPPYICTPAEITQ 446
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 122/410 (29%), Positives = 184/410 (44%), Gaps = 67/410 (16%)
Query: 83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ 142
V G+G LYD GR YLD SSG V +GHG A+ + + QA L V +S
Sbjct: 14 VAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDV 73
Query: 143 IE-----LAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT-EFVSF 196
+E LA+ + +F R + + G+EA E+A+K AR++ + + EP + ++
Sbjct: 74 LEEYAGRLARFVGLPTF--RFWAVSGGSEATESAVKLARQY----HVERGEPGRFKVITR 127
Query: 197 TNSFHGRTMGALALTSKEHYRSPFEPVM------------PGVNFVEYGNIEATRKLIQ- 243
S+HG ++G+LA + R + P+M P N E + E R L++
Sbjct: 128 VPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAE--DAEGLRALLER 185
Query: 244 --PGKTAAVFVEPIQGEG-GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300
P AA EP+ G + + + +RD CD+AG + + DEV G+GR G A
Sbjct: 186 EGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLA 245
Query: 301 HEHY-GIFPDIMTLAKPLAGGL-PIGAALVTEKVASAINYGD----HGSTFAGSPLVCNA 354
+ G+ PDI L K LA G P+ L +V + G HG T+AG P+ A
Sbjct: 246 LSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAA 305
Query: 355 AIAVLDKISNP--------------AFLASKLARNPHVKDVRGLG---------LIIGIE 391
++VLD + A L + AR P + VRG G L G
Sbjct: 306 GLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQA 365
Query: 392 FDVS--ATPVVDACRDSGLLVLTA------GKGNVVRLVPPLIISEQELD 433
F+ A+ + A GL+ G+G+ + L PPL I+ E+D
Sbjct: 366 FETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVD 415
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 117/427 (27%), Positives = 175/427 (40%), Gaps = 67/427 (15%)
Query: 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVS 134
+ R VV+ G+G + D GR YLD +SG+ G I A Q H
Sbjct: 46 HQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFPGYHAF 105
Query: 135 NMYYSIPQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPAT 191
S + L+++LV S D RVF++N+G+EAN+ +K P ++ T
Sbjct: 106 FGRXSDQTVXLSEKLVEVSPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILT 165
Query: 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV------NFVEYGN----------- 234
+ N++HG T + + T K Y S F +PG ++ YG
Sbjct: 166 RW----NAYHGVTAVSASXTGKP-YNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVAR 220
Query: 235 ----IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
+E T + A F EP+ G GG+ K + Q + ++ DEV C
Sbjct: 221 LARELEETIQREGADTIAGFFAEPVXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVIC 280
Query: 291 GLGRTGYLWAHEHYGIFPDIMTLAKPL-AGGLPIGAALV-------TEKVASAINYGDHG 342
G GRTG W Y PD + +K L AG P GA ++ E AI HG
Sbjct: 281 GFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHG 340
Query: 343 STFAGSPLVCNAAIAVLDKISN-----------PAF--LASKLARNPHVKDVRGLGLIIG 389
T +G P+ C A+ +D + N P F +A P++ + RG+G
Sbjct: 341 FTASGHPVGCAIALKAIDVVXNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFXWA 400
Query: 390 IEF---DVSATP----------VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAV 436
+E S TP + + C D GL+ G+ V L PP I++E + D+
Sbjct: 401 LEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQS--VVLCPPFILTEAQXDEXF 458
Query: 437 EILCKTL 443
+ L K L
Sbjct: 459 DKLEKAL 465
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 112/449 (24%), Positives = 201/449 (44%), Gaps = 63/449 (14%)
Query: 48 NDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGI 107
NDA +AG +G ++ + + + A VL +G ++ +GR +D +G+
Sbjct: 5 NDATN-AAGAVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGM 63
Query: 108 AVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELAKRLVACSFAD--RVFFSNTG 164
+G+G + + A+ QA VL + S Y + P LA+++ + D R+FF+ G
Sbjct: 64 WCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGG 123
Query: 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM 224
+ A ++A++F+ + ++N + + + +HG T A T + F+
Sbjct: 124 STAVDSALRFS---EFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQ 180
Query: 225 PGVNFVEYGN-------------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSAT 265
++F+ N E + + P AA EPI GG+
Sbjct: 181 DRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPP 240
Query: 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH-YGIFPDIMTLAKPLAGG-LPI 323
+ + C+ L + DEV G GR G +A E +G+ PDI+T AK + G +P+
Sbjct: 241 AGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPL 300
Query: 324 GAALVTEKVASAI-------NYGDHGSTFAGSPLVCNAAIA---------VLDKISNPA- 366
G ++E V + I ++ +G T++ P+ C AA+A ++D+ A
Sbjct: 301 GGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMAD 360
Query: 367 FLASKLA--RN-PHVKDVRGLGLI------------IGIEFDVSATPVVDA-CRDSGLLV 410
+ A+ LA R+ P V + R +GL+ G D + T +D C + GL+V
Sbjct: 361 YFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIV 420
Query: 411 LTAGKGNVVRLVPPLIISEQELDQAVEIL 439
G++ + PPLIIS ++D+ V I+
Sbjct: 421 RPL--GDLCVISPPLIISRAQIDEMVAIM 447
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 102/418 (24%), Positives = 181/418 (43%), Gaps = 57/418 (13%)
Query: 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY 138
R P ++ + +G L D +GR+ D SG+ GH + +AV Q + L + Y
Sbjct: 31 RDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQY 90
Query: 139 SIP-QIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P +LA+++ + + VFF+++G+E A+K R + R +K T+ +
Sbjct: 91 GHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATK---TKMIG 147
Query: 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---------------GNIEATRK 240
+HG + +L R F M V+ + + G I +
Sbjct: 148 RARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE 207
Query: 241 LIQ------PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294
L++ AAVFVEP+ G G+ + +L+ R+ C+ LLVFDEV G GR
Sbjct: 208 LLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGR 267
Query: 295 TGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVAS----------AINYGDHGS 343
TG ++ + +G+ PD+M +AK + G +P+GA + + ++ A+ + HG
Sbjct: 268 TGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEF-PHGY 326
Query: 344 TFAGSPLVCNAAIAVLDKISNPAFLASKLARNPH-------------VKDVRGLGLIIGI 390
T++ P+ C A +A L + + S PH V D+R GL I
Sbjct: 327 TYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAI 386
Query: 391 EFDVSATPVVDACRDSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTL 443
+ + ++G+ + AG G+ ++ P Q+LD+ + + + L
Sbjct: 387 QIAPRDGDAIVRPFEAGMALWKAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVL 444
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 110/417 (26%), Positives = 188/417 (45%), Gaps = 65/417 (15%)
Query: 83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSI 140
V+ + G + D +G + LD +G+ +G+G + +A+ DQA L + + + +
Sbjct: 35 VIKTASGVFIEDRDGTKLLDAFAGLYCVNVGYGRQEIAEAIADQARELAYYHSYVGHGTE 94
Query: 141 PQIELAKRLV--ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
I LAK ++ A +V+F G++ANE +K ++N + + +S
Sbjct: 95 ASITLAKXILDRAPKNXSKVYFGLGGSDANETNVKL---IWYYNNILGRPEKKKIISRWR 151
Query: 199 SFHGRTMGALALTSKEHYRSPFE-PVMPGVN------------------FVEYGNIEATR 239
+HG + +LT E + F+ PV ++ FV + E
Sbjct: 152 GYHGSGLVTGSLTGLELFHKKFDLPVEQVIHTEAPYYFRREDLNQTEEQFVAHCVAELEA 211
Query: 240 KLIQPG-KTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
+ + G T A F+ EPI G GGI + + ++ + LLV DEV G GR G
Sbjct: 212 LIEREGADTIAAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGT 271
Query: 298 LWAHEHYGIFPDIMTLA-KPLAGGL-PIGAALVTEKVASAINYGD-------HGSTFAGS 348
+ +HYG+ PDI+T+A K L P+ ++V++KV + G HG T++
Sbjct: 272 XFGSDHYGLEPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHGWTYSAH 331
Query: 349 PLVCNAAIA---VLDK---ISNP----AFL----ASKLARNPHVKDVRGLGLIIGIEF-- 392
P+ A +A +LD+ +SN A+L A L+++ +V DVRG GL+ +EF
Sbjct: 332 PIGAAAGVANLKLLDELNLVSNAGEVGAYLNATXAEALSQHANVGDVRGEGLLCAVEFVK 391
Query: 393 DVSATPVVDACRDSG------------LLVLTAGKGNVVRLVPPLIISEQELDQAVE 437
D + DA G ++ +G+++ PP ++ E DQ VE
Sbjct: 392 DRDSRTFFDAADKIGPQISAKLLEQDKIIARAXPQGDILGFAPPFCLTRAEADQVVE 448
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 119/416 (28%), Positives = 180/416 (43%), Gaps = 59/416 (14%)
Query: 84 LASGKGCKLYDA-EGREYLDLSSGIAVNALGHG-----DADWIKAVVDQANVLTHVSNMY 137
L G L DA GR YLD+ + +A +ALG D A + QA + ++
Sbjct: 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 138 YSIPQ---IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ-RHSNPDSKEPA--T 191
YS+ +E R++ +FF G A E A+K A ++ RH+ +PA T
Sbjct: 99 YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGT 158
Query: 192 EFVSFTNSFHGRTMGALALTSKE---HYRSP-FE------PVM-PGVN--FVEYGNIEAT 238
+ + +FHGR+ L+LT+ + R P F+ P M PG++ + EA
Sbjct: 159 QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEAL 218
Query: 239 RKL-----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
R+ +P A EPIQGEGG EF +R+ CD+ ALL+FDEVQ G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 294 RTGYLWAHEHYGIFPDIMTLAKP------LAGGLPIGAALVTEKVASAINYGDHGSTFAG 347
TG WA++ + PDI+ K +AG A V S +N ST+ G
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLN-----STWGG 333
Query: 348 SPLVCNAAIAVLDKISNPAFLASKLARNPHVK---------------DVRGLGLIIGIEF 392
+ A +L+ I + +++ D RG GL+
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSL 393
Query: 393 DVSA--TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446
+A ++ ++VL AG + VR PPL +S E+D A+ + LPV+
Sbjct: 394 PTTADRDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 176/411 (42%), Gaps = 49/411 (11%)
Query: 84 LASGKGCKLYDA-EGREYLDLSSGIAVNALGHG-----DADWIKAVVDQANVLTHVSNMY 137
L G L DA GR YLD+ + +A +ALG D A + QA + ++
Sbjct: 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 138 YSIPQ---IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ-RHSNPDSKEPA--T 191
YS+ +E R++ +FF G A E A+K A ++ RH+ +PA T
Sbjct: 99 YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGT 158
Query: 192 EFVSFTNSFHGRTMGALALTSKE---HYRSP-FE------PVM-PGVN--FVEYGNIEAT 238
+ + +FHGR+ L+LT+ + R P F+ P M PG++ + EA
Sbjct: 159 QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEAL 218
Query: 239 RKL-----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
R+ +P A EPIQGEGG EF +R+ CD+ ALL+FDEVQ G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 294 RTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDH-GSTFAGSPLVC 352
TG WA++ + PDI+ K + V E + ST+ G+
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLASTWGGNLTDM 338
Query: 353 NAAIAVLDKISNPAFLASKLARNPHVK---------------DVRGLGLIIGIEFDVSA- 396
A +L+ I + +++ D RG GL+ +A
Sbjct: 339 VRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTAD 398
Query: 397 -TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446
++ ++VL AG + VR PPL +S E+D A+ + LPV+
Sbjct: 399 RDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 180/416 (43%), Gaps = 59/416 (14%)
Query: 84 LASGKGCKLYDA-EGREYLDLSSGIAVNALGHG-----DADWIKAVVDQANVLTHVSNMY 137
L G L DA GR YLD+ + +A +ALG D A + QA + ++
Sbjct: 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 138 YSIPQ---IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ-RHSNPDSKEPA--T 191
YS+ +E R++ +FF G A E A+K A ++ RH+ +PA T
Sbjct: 99 YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGT 158
Query: 192 EFVSFTNSFHGRTMGALALTSKE---HYRSP-FE------PVM-PGVN--FVEYGNIEAT 238
+ + +FHGR+ L+LT+ + R P F+ P M PG++ + EA
Sbjct: 159 QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEAL 218
Query: 239 RKL-----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
R+ +P A EPIQGEGG EF +R+ CD+ ALL+FDEVQ G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 294 RTGYLWAHEHYGIFPDIMTLAKP------LAGGLPIGAALVTEKVASAINYGDHGSTFAG 347
TG WA++ + PDI+ K +AG A V S +N S++ G
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLN-----SSWGG 333
Query: 348 SPLVCNAAIAVLDKISNPAFLASKLARNPHVK---------------DVRGLGLIIGIEF 392
+ A +L+ I + +++ D RG GL+
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSL 393
Query: 393 DVSA--TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446
+A ++ ++VL AG + VR PPL +S E+D A+ + LPV+
Sbjct: 394 PTTADRDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 134/300 (44%), Gaps = 29/300 (9%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
P+V KG ++D +G +Y+D +GH + I A+ A + S +
Sbjct: 19 PIVFDHVKGAHIWDVDGNQYIDYVGSWGPAIVGHAHPEVIDAL--HAALEKGTSFGAPCL 76
Query: 141 PQIELAKRLVAC-SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199
+ LA+ ++A + V F N+GTEA A ++ R + + + + F
Sbjct: 77 LENILAEMVIAAVPSVEMVRFVNSGTEACMAVLRLMRAYTQRE---------KVIKFEGC 127
Query: 200 FHGRTMGALALTSKEHYRSPFEPVMPGV--------NFVEYGNIEATRKLIQ--PGKTAA 249
+HG + + + P PGV Y ++EA +L + P A
Sbjct: 128 YHGHA-DMFLVKAGSGVATLGLPDSPGVPKATTAATLTAPYNDLEAVSRLFEQYPNDIAG 186
Query: 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309
V +EP+ G G FL+ LR+ GALLVFDEV G R Y A E +G+ PD
Sbjct: 187 VILEPVVGNAGFIPPDAGFLEGLRELTKQYGALLVFDEVMTGF-RIAYGGAQEKFGVTPD 245
Query: 310 IMTLAKPLAGGLPIGA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
+ TL K + GGLP+GA A + + VA A G T +G+PL A I L+ +S P
Sbjct: 246 LTTLGKVIGGGLPVGAYGGRAEIMKMVAPAGPVYQAG-TLSGNPLAMTAGIKTLEILSRP 304
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/415 (25%), Positives = 184/415 (44%), Gaps = 64/415 (15%)
Query: 83 VLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVSNMYYSI 140
+ A G+G ++D GR+ +D +G+ +G+G A+ QA L H + +
Sbjct: 36 IXAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTE 95
Query: 141 PQIELAKRLV--ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198
I LAK ++ A RV+F +G++ANE IK ++N + + +S
Sbjct: 96 ASITLAKXIIDRAPKGXSRVYFGLSGSDANETNIKL---IWYYNNVLGRPEKKKIISRWR 152
Query: 199 SFHGRTMGALALTSKEHYRSPFE-PVMPGVN------------------FVEYGNIEATR 239
+HG + +LT + + + F+ P P ++ F ++ +
Sbjct: 153 GYHGSGVXTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSXSEEQFSQHCADKLEE 212
Query: 240 KLIQPG-KTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
++ G +T A F+ EPI G GGI + + ++ LLV DEV G GR G
Sbjct: 213 XILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT 272
Query: 298 LWAHEHYGIFPDIMTLA-KPLAGGL-PIGAALVTEKVASAINYGD-------HGSTFAGS 348
+ +HYGI PD++T+A K L P+ +V ++V + G HG T++
Sbjct: 273 XFGSDHYGIKPDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAH 332
Query: 349 PLVCNAAIAVL------DKISNP----AFLASKLAR----NPHVKDVRGLGLIIGIEF-- 392
P+ A +A L D ++N A+ ++LA+ + +V +VRG G + +EF
Sbjct: 333 PICVAAGVANLELIDEXDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGXLAAVEFVA 392
Query: 393 DVSATPVVDACRDSGLLVLTA-----------GKGNVVRLVPPLIISEQELDQAV 436
D DA + G V TA +G+++ PPL ++ ++ D V
Sbjct: 393 DKDDRVFFDASQKIGPQVATALAASGVIGRAXPQGDILGFAPPLCLTREQADIVV 447
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 179/416 (43%), Gaps = 59/416 (14%)
Query: 84 LASGKGCKLYDA-EGREYLDLSSGIAVNALGHG-----DADWIKAVVDQANVLTHVSNMY 137
L G L DA GR YLD+ + +A +ALG D A + QA + ++
Sbjct: 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDV 98
Query: 138 YSIPQ---IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQ-RHSNPDSKEPA--T 191
YS+ +E R++ +FF G A E A+K A ++ RH+ +PA T
Sbjct: 99 YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGT 158
Query: 192 EFVSFTNSFHGRTMGALALTSKE---HYRSP-FE------PVM-PGVN--FVEYGNIEAT 238
+ + +FHGR+ L+LT+ + R P F+ P M PG++ + EA
Sbjct: 159 QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEAL 218
Query: 239 RKL-----IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293
R+ +P A EPIQG GG EF +R+ CD+ ALL+FDEVQ G G
Sbjct: 219 RQARAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 294 RTGYLWAHEHYGIFPDIMTLAKP------LAGGLPIGAALVTEKVASAINYGDHGSTFAG 347
TG WA++ + PDI+ K +AG A V S +N ST+ G
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLN-----STWGG 333
Query: 348 SPLVCNAAIAVLDKISNPAFLASKLARNPHVK---------------DVRGLGLIIGIEF 392
+ A +L+ I + +++ D RG GL+
Sbjct: 334 NLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSL 393
Query: 393 DVSA--TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446
+A ++ ++VL AG + VR PPL +S E+D A+ + LPV+
Sbjct: 394 PTTADRDELIRQLWQRAVIVLPAG-ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 142/308 (46%), Gaps = 41/308 (13%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGD---ADWIKAVVDQANVL---THVS 134
P+ + GKG K++D +G EY+D LGH + + +K V + T V
Sbjct: 44 PIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTNDRVVESLKKVAEYGTSFGAPTEVE 103
Query: 135 NMYYSIPQIELAKRLV-ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193
N ELAK ++ + V ++GTEA +A++ AR + + +
Sbjct: 104 N--------ELAKLVIDRVPSVEIVRMVSSGTEATMSALRLARGYTGRN---------KI 146
Query: 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN--------FVEYGNIEATRKLIQP- 244
+ F +HG +L + + + P PGV V Y ++E+ + Q
Sbjct: 147 LKFEGCYHGHG-DSLLIKAGSGVATLGLPDSPGVPEGIAKNTITVPYNDLESVKLAFQQF 205
Query: 245 -GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH 303
A V VEP+ G G+ + FLQ LRD + G+LL+FDEV G R Y A +
Sbjct: 206 GEDIAGVIVEPVAGNMGVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGF-RVDYNCAQGY 264
Query: 304 YGIFPDIMTLAKPLAGGLPIGA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVL 359
+G+ PD+ L K + GGLP+GA A + E++A + G T +G+PL A + L
Sbjct: 265 FGVTPDLTCLGKVIGGGLPVGAYGGKAEIMEQIAPSGPIYQAG-TLSGNPLAMTAGLETL 323
Query: 360 DKISNPAF 367
+++ ++
Sbjct: 324 KQLTPDSY 331
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 130/298 (43%), Gaps = 27/298 (9%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANV-LTHVSNMYYS 139
P+ + G L+D +G+ Y+D LGH +AV++ L+ +
Sbjct: 36 PLFIERADGAYLFDVDGKAYIDYVGSWGPXILGHNHPAIRQAVIEAVERGLSFGAPTEXE 95
Query: 140 IPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199
+ +L LV D V N+GTEA +AI+ AR + + + F
Sbjct: 96 VKXAQLVTDLVPTX--DXVRXVNSGTEATXSAIRLARGYTGRD---------KIIKFEGC 144
Query: 200 FHGRTMGALALTSKEHYRSPFEPVMPGV--NFVE------YGNIEATRKLIQ--PGKTAA 249
+HG L + + + +P PGV +F + Y ++ + R+ + P + A
Sbjct: 145 YHGHA-DCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVAC 203
Query: 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309
+ VEP+ G EFL LR CD+ GALL+ DEV G R A ++Y + PD
Sbjct: 204 IIVEPVAGNXNCIPPLPEFLPGLRALCDEFGALLIIDEVXTGF-RVALAGAQDYYHVIPD 262
Query: 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGD---HGSTFAGSPLVCNAAIAVLDKISN 364
+ L K + GG P+GA +V +A+ T +G+P+ A A L +IS
Sbjct: 263 LTCLGKIIGGGXPVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAXAAGFACLTEISQ 320
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 139/308 (45%), Gaps = 37/308 (12%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140
P L G+G ++DA+G YLD LGH + V + T + +
Sbjct: 35 PPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRE-----TLERGLTFGA 89
Query: 141 P---QIELAKRLV-ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196
P ++ LAK++ A F D V F N+GTEA +A++ AR + V F
Sbjct: 90 PSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPY---------IVKF 140
Query: 197 TNSFHGRT--------MGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GK 246
++HG GAL L P E +EY + E R++++ +
Sbjct: 141 RGNYHGHADGLLVEAGSGALTLGVPSSAGVP-EEYAKLTLVLEYNDPEGLREVLKRRGEE 199
Query: 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI 306
AA+ EP+ G G+ T++FL+ L +A G LL+ DEV G R + A E G+
Sbjct: 200 IAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGL 257
Query: 307 FPDIMTLAKPLAGGLPIGAAL----VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362
PD++TL K L GGLP A + EKVA + T +G+PL A +A L+ +
Sbjct: 258 KPDLVTLGKILGGGLPAAAYAGRREIMEKVAP-LGPVYQAGTLSGNPLAMAAGLATLELL 316
Query: 363 -SNPAFLA 369
NP + A
Sbjct: 317 EENPGYYA 324
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 144/315 (45%), Gaps = 53/315 (16%)
Query: 81 PVVLASGKGCKLYDAEGREYLD--LSSGIAVNALGHGD---ADWIKAVVDQANVL---TH 132
P+ GKG K+YD +G EY+D LS G ++ GH + + +KAV ++ T
Sbjct: 36 PLFXERGKGSKVYDIDGNEYIDYVLSWGPLIH--GHANDRVVEALKAVAERGTSFGAPTE 93
Query: 133 VSN-----MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSK 187
+ N + +P IE+ + + N+GTEA +A++ AR + +
Sbjct: 94 IENKLAKLVIERVPSIEIVRXV------------NSGTEATXSALRLARGYTGRN----- 136
Query: 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN--------FVEYGNIEATR 239
+ + F +HG +L + + + P PGV V Y ++E+ +
Sbjct: 137 ----KILKFIGCYHGHG-DSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVK 191
Query: 240 KLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY 297
+ A V VEP+ G G+ FL+ LR+ + GALL+FDEV G R Y
Sbjct: 192 YAFEQFGDDIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGF-RVAY 250
Query: 298 LWAHEHYGIFPDIMTLAKPLAGGLPIGA----ALVTEKVASAINYGDHGSTFAGSPLVCN 353
+YG+ PD+ L K + GGLP+GA A + +VA + G T +G+PL
Sbjct: 251 NCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIYQAG-TLSGNPLAXA 309
Query: 354 AAIAVLDKISNPAFL 368
A L +++ +++
Sbjct: 310 AGYETLVQLTPESYV 324
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 120/282 (42%), Gaps = 49/282 (17%)
Query: 88 KGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELA 146
+G L D +G LDL S I+ +G+ +K V NV T ++ I P
Sbjct: 53 RGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFV 112
Query: 147 KRL------VACSFADRVFFSNTGTEANEAAIK----FARKFQRHSNPDSKE-------- 188
++L VA ++ G+ +NE A K + R +R + SKE
Sbjct: 113 EKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMIN 172
Query: 189 -----PATEFVSFTNSFHGRTMGALALTSKE--------HYRSPFEPV----MPGVNFVE 231
P +SF +FHGRTMG LA T + + P P P FV+
Sbjct: 173 QAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVK 232
Query: 232 YGNIEATR----------KLIQPGKT-AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG 280
E R K + KT A + VEPIQ EGG A+ +F + LRD G
Sbjct: 233 ENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHG 292
Query: 281 ALLVFDEVQCGLGRTGYLWAHEHYGIF--PDIMTLAKPLAGG 320
+ DEVQ G G TG WAHEH+G+ D+MT +K + G
Sbjct: 293 CAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTG 334
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 141/346 (40%), Gaps = 71/346 (20%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
+ E+ A +KL+ G + RA P+V K +D +G Y+D
Sbjct: 10 KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 69
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
GH + I+A+ NVL + N ++P IE+ +
Sbjct: 70 ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 117
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
F N+GTEA A ++ R + + + F +HG +
Sbjct: 118 --FVNSGTEACMAVLRLMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 166
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
L L S SP P N + Y ++EA + L PG+ A V +EPI G G
Sbjct: 167 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 221
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
FL+ LR+ + ALLVFDEV G R Y E +G+ PD+ TL K + GGLP+
Sbjct: 222 PDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 280
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
GA + + VA A G T +G+PL A I L+ + P
Sbjct: 281 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQP 325
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 141/346 (40%), Gaps = 71/346 (20%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
+ E+ A +KL+ G + RA P+V K +D +G Y+D
Sbjct: 10 KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 69
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
GH + I+A+ NVL + N ++P IE+ +
Sbjct: 70 ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 117
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
F N+GTEA A ++ R + + + F +HG +
Sbjct: 118 --FVNSGTEACMAVLRIMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 166
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
L L S SP P N + Y ++EA + L PG+ A V +EPI G G
Sbjct: 167 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 221
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
FL+ LR+ + ALLVFDEV G R Y E +G+ PD+ TL K + GGLP+
Sbjct: 222 PDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 280
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
GA + + VA A G T +G+PL A I L+ + P
Sbjct: 281 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQP 325
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 141/346 (40%), Gaps = 71/346 (20%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
+ E+ A +KL+ G + RA P+V K +D +G Y+D
Sbjct: 5 KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 64
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
GH + I+A+ NVL + N ++P IE+ +
Sbjct: 65 ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 112
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
F N+GTEA A ++ R + + + F +HG +
Sbjct: 113 --FVNSGTEACMAVLRIMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 161
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
L L S SP P N + Y ++EA + L PG+ A V +EPI G G
Sbjct: 162 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 216
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
FL+ LR+ + ALLVFDEV G R Y E +G+ PD+ TL K + GGLP+
Sbjct: 217 PDAGFLEGLREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 275
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
GA + + VA A G T +G+PL A I L+ + P
Sbjct: 276 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQP 320
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 141/346 (40%), Gaps = 71/346 (20%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
+ E+ A +KL+ G + RA P+V K +D +G Y+D
Sbjct: 5 KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 64
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
GH + I+A+ NVL + N ++P IE+ +
Sbjct: 65 ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 112
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
F N+GTEA A ++ R + + + F +HG +
Sbjct: 113 --FVNSGTEACMAVLRLMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 161
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
L L S SP P N + Y ++EA + L PG+ A V +EPI G G
Sbjct: 162 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 216
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
FL+ LR+ + ALLVFDEV G R Y E +G+ PD+ TL K + GGLP+
Sbjct: 217 PDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 275
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
GA + + VA A G T +G+PL A I L+ + P
Sbjct: 276 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQP 320
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 141/346 (40%), Gaps = 71/346 (20%)
Query: 61 NNKEVMEAEKKLLVGTYN---RA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
+ E+ A +KL+ G + RA P+V K +D +G Y+D
Sbjct: 5 KSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPA 64
Query: 111 ALGHGDADWIKAV-------------VDQANVLTHVSNMYYSIPQIELAKRLVACSFADR 157
GH + I+A+ NVL + N ++P IE+ +
Sbjct: 65 ICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVN--DAVPSIEMVR---------- 112
Query: 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT----------MGA 207
F N+GTEA A ++ R + + + F +HG +
Sbjct: 113 --FVNSGTEACMAVLRIMRAYTGRD---------KIIKFEGCYHGHADMFLVKAGSGVAT 161
Query: 208 LALTSKEHYRSPFEPVMPGVNFVE--YGNIEATRKLI--QPGKTAAVFVEPIQGEGGIYS 263
L L S SP P N + Y ++EA + L PG+ A V +EPI G G
Sbjct: 162 LGLPS-----SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIV 216
Query: 264 ATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323
FL+ LR+ + ALLVFDEV G R Y E +G+ PD+ TL K + GGLP+
Sbjct: 217 PDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPV 275
Query: 324 GA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNP 365
GA + + VA A G T +G+PL A I L+ + P
Sbjct: 276 GAYGGKREIMQLVAPAGPMYQAG-TLSGNPLAMTAGIKTLELLRQP 320
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 131/299 (43%), Gaps = 35/299 (11%)
Query: 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS 139
AP+ GKG +D +G +Y+D + GH KA+ A + + Y
Sbjct: 37 APIAXERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAE-----NGVLYG 91
Query: 140 IP---QIELAKRLVACSFA-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195
P +++ AK L A D+V F N+GTEA I+ AR + T+
Sbjct: 92 TPTALEVKFAKXLKEAXPALDKVRFVNSGTEAVXTTIRVARAYTGR---------TKIXK 142
Query: 196 FTNSFHGRT--------MGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-- 245
F +HG + G L + + P + + V V + N+E ++ +
Sbjct: 143 FAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVP-QSIAQEVITVPFNNVETLKEALDKWGH 201
Query: 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYG 305
+ AA+ VEPI G GI FL+ + + +AGAL+++DEV R Y A + G
Sbjct: 202 EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFXYGGAQDLLG 260
Query: 306 IFPDIMTLAKPLAGGLPIGA----ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLD 360
+ PD+ L + GGLPIGA + E+VA + T AG+P + IA L+
Sbjct: 261 VTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAP-LGPAYQAGTXAGNPASXASGIACLE 318
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 143/322 (44%), Gaps = 42/322 (13%)
Query: 62 NKEVMEAEKKLLVGTYNRA-------PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH 114
++ EA+ + + G +R+ P+ +A G+G L+DA+G Y D + GH
Sbjct: 44 SQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGH 103
Query: 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAI 172
+ AV++ +++ +++ + LA RL+ F +++ F+N+GTEAN A+
Sbjct: 104 SAPEIRDAVIEAMQGGINLTG--HNLLEGRLA-RLICERFPQIEQLRFTNSGTEANLMAL 160
Query: 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232
A F + V F+ +HG +G A S PF+ ++ + Y
Sbjct: 161 TAALHFTGRR---------KIVVFSGGYHGGVLGFGARPSPT--TVPFDFLV-----LPY 204
Query: 233 GNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290
+ + R I+ + A V VEP+QG G +FLQ LR++ GALLVFDEV
Sbjct: 205 NDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVM- 263
Query: 291 GLGRTGYLWAH---EHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD----HGS 343
T L H GI D+ TL K + GG+ GA V + + H
Sbjct: 264 ----TSRLAPHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSG 319
Query: 344 TFAGSPLVCNAAIAVLDKISNP 365
TF + + A A L K+ P
Sbjct: 320 TFNNNVMTMAAGYAGLTKLFTP 341
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 140/338 (41%), Gaps = 40/338 (11%)
Query: 59 GRNNKEVMEAEKKLLVGTYN---RA-----PVVLASGKGCKLYDAEGREYLDLSSGIAVN 110
G ++ + E K+L G N RA P + G+G LY +G +DL
Sbjct: 9 GEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPL 68
Query: 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIP---QIELAKRLVA-CSFADRVFFSNTGTE 166
LGH ++AV + Y P ++ LA++++ + F N+GTE
Sbjct: 69 ILGHKHPRVLEAVEEAL-----ARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTE 123
Query: 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVM 224
A AI+ AR + + F +HG L A ++ HY P +
Sbjct: 124 ATMTAIRLARGYTGRDL---------ILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGV 174
Query: 225 PG-----VNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD 277
P Y ++EA ++ + A V VEP+ G+ +EFL L+
Sbjct: 175 PEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSR 234
Query: 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAIN 337
++GALL+ DEV G R G A ++ I DI+ L K + GG P+GA + +V S +
Sbjct: 235 ESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLT 293
Query: 338 YGD---HGSTFAGSPLVCNAAIAVLDKI-SNPAFLASK 371
+ TF P+ A +A L + P + S+
Sbjct: 294 PQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSR 331
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 127/301 (42%), Gaps = 50/301 (16%)
Query: 81 PVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQA-----NVLTHVSN 135
P+V+A G G + D +G Y++ GH I+A V++A N+ T N
Sbjct: 83 PLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHP-VIRAAVERALAVGLNLSTQTEN 141
Query: 136 MYYSIPQIELAKRLVACSFADR------VFFSNTGTEANEAAIKFARKFQRHSNPDSKEP 189
+ L A + DR V F+N+GTEAN A+ A
Sbjct: 142 -----------EALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKT------ 184
Query: 190 ATEFVSFTNSFHGRTMGALALTSKEH-YRSPFEPVMPGVNFVEYGNIEATRKLIQPG--K 246
++F +HG G L S +P+ V+ GV Y ++E T L++
Sbjct: 185 ---VLAFDGGYHG---GLLNFASGHAPTNAPYHVVL-GV----YNDVEGTADLLKRHGHD 233
Query: 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI 306
AA+ VEP+ G GG A + FL LR GALL+FDEV R A E GI
Sbjct: 234 CAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT--SRLSGGGAQEMLGI 291
Query: 307 FPDIMTLAKPLAGGLPIGA----ALVTEKVASAINYG-DHGSTFAGSPLVCNAAIAVLDK 361
D+ TL K + GG+ GA + E+ A + H TF + L +A A L +
Sbjct: 292 SADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQ 351
Query: 362 I 362
I
Sbjct: 352 I 352
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 115/298 (38%), Gaps = 74/298 (24%)
Query: 141 PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA-RKFQRHSN-----PDSKEPAT 191
P ++ A+ L V +A RV+FS+ G+ A E A+K A RKF N + K
Sbjct: 425 PALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVV 484
Query: 192 EFVSFTNSFHGRTMGALALTSKEHY----RSPFEP-----VMPGVNFV------------ 230
+ ++ S+HG T+GA+ + Y + P+ + P F+
Sbjct: 485 KVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPES 544
Query: 231 ------EYGNIEATRKLI----------------------------QPGKTAAVFVEP-I 255
EYG + ++ Q A+ +EP I
Sbjct: 545 FSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 604
Query: 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315
G GG++ F + L + C + ++FDEV G R G E G PDI AK
Sbjct: 605 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 664
Query: 316 PLAGGL-PIGAALVTEKVASAINYGD-------HGSTFAGSPLVCNAAIAVLDKISNP 365
L GG+ P+ L T+ V + + GD HG +++ + C A + +P
Sbjct: 665 LLTGGMVPLAVTLATDAVFDSFS-GDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDP 721
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 113/298 (37%), Gaps = 74/298 (24%)
Query: 141 PQIELAKRL---VACSFADRVFFSNTGTEANEAAIKFA-RKFQRHSN-----PDSKEPAT 191
P ++ A+ L V +A RV+FS+ G+ A E A+K A RKF N + K
Sbjct: 425 PALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKXAFRKFCVDHNFCEATEEEKHIVV 484
Query: 192 EFVSFTNSFHGRTMGALALTSKEHY----RSPFEP-----VMPGVNFV------------ 230
+ ++ S+HG T+GA + Y + P+ + P F+
Sbjct: 485 KVIALRGSYHGDTLGAXEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPES 544
Query: 231 ------EYGNIEATRKLIQPGKTA----------------------------AVFVEP-I 255
EYG + ++ + A A+ +EP I
Sbjct: 545 FSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 604
Query: 256 QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315
G GG + F + L + C + ++FDEV G R G E G PDI AK
Sbjct: 605 HGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAK 664
Query: 316 PLAGG-LPIGAALVTEKVASAINYGD-------HGSTFAGSPLVCNAAIAVLDKISNP 365
L GG +P+ L T+ V + + GD HG +++ C A + +P
Sbjct: 665 LLTGGXVPLAVTLATDAVFDSFS-GDSKLKALLHGHSYSAHAXGCATAAKAIQWFKDP 721
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 111/281 (39%), Gaps = 26/281 (9%)
Query: 82 VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP 141
+ ++ +G D +G YLD G LGHG A+ A L+H S P
Sbjct: 41 LFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAI---AEALSHGVQYAASHP 97
Query: 142 -QIELAKRLVACSFADRVF-FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199
++ A+R+VA + R F+ +GTE A++ AR F + F
Sbjct: 98 LEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRR---------MILRFEGH 148
Query: 200 FHGRTMGALALTSKEHYRSPFEPVMPGVN----FVEYGNIEATRKLI--QPGKTAAVFVE 253
+HG + + + P V+P + +IE R++ AA E
Sbjct: 149 YHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAE 208
Query: 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL 313
P+ G+ + FL+ + GAL + DEV G R G + PD+ L
Sbjct: 209 PVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCL 267
Query: 314 AKPLAGGLPIGAALVTEKVASAINYGD-----HGSTFAGSP 349
AK AGGLP G E V ++ G H TF G+P
Sbjct: 268 AKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNP 308
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 344 TFAGSPLVCNAAIAVLDKISNPA---FLASKLARNPHVKDVRGLGLIIGIEFDVSATPVV 400
+F G +V +A DK++NPA + ++ +NP K++ G+G++ I + TP+
Sbjct: 253 SFQGPEVVASAG----DKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIP-PIEKTPIP 307
Query: 401 DACRDSGLLV 410
+G+++
Sbjct: 308 TGVPKTGMMI 317
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 9/122 (7%)
Query: 138 YSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197
YS P L+ A RV F NTG I + R +P+ + T F
Sbjct: 765 YSSPLFRLS---TANDIKQRVRFHNTGPSLVPGVIVMGIEDARGESPEMAQLDTNFSYVV 821
Query: 198 NSF----HGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA-TRKLIQPGKTAAVFV 252
F H +M AL S P + V V EA T + PG+T +VFV
Sbjct: 822 TVFNVCPHEVSMDIPALASMGFELHPVQ-VNSSDTLVRKSAYEAATGRFTVPGRTVSVFV 880
Query: 253 EP 254
EP
Sbjct: 881 EP 882
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 344 TFAGSPLVCNAAIAVLDKISNPA---FLASKLARNPHVKDVRGLGLIIGIEFDVSATPVV 400
+F G +V +A DK++NPA + ++ +NP K++ G+G++ I + TP+
Sbjct: 253 SFQGPEVVASAG----DKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIP-PIEKTPIP 307
Query: 401 DACRDSGLLV 410
+G+++
Sbjct: 308 TGVPKTGMMI 317
>pdb|3IWG|A Chain A, Acetyltransferase From Gnat Family From Colwellia
Psychrerythraea.
pdb|3IWG|B Chain B, Acetyltransferase From Gnat Family From Colwellia
Psychrerythraea
Length = 276
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 69 EKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117
E+K L G +++ + LA+G+ C+L+D EY DL +A + G G A
Sbjct: 178 ERKELFGYWHKGKL-LAAGE-CRLFDQYQTEYADLGXIVAQSNRGQGIA 224
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 262 YSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG 296
YS T + R+AC + ++F V CG G G
Sbjct: 1996 YSGTANLDRVTREACPELDYFVIFSSVSCGRGNAG 2030
>pdb|3FKJ|A Chain A, Crystal Structure Of A Putative Phosphosugar Isomerase
(Stm_0572) From Salmonella Typhimurium Lt2 At 2.12 A
Resolution
pdb|3FKJ|B Chain B, Crystal Structure Of A Putative Phosphosugar Isomerase
(Stm_0572) From Salmonella Typhimurium Lt2 At 2.12 A
Resolution
Length = 347
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 203 RTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262
+ + + ++ S E++ PFE PG F+ + TR L A F+E QG+ +
Sbjct: 238 QWINSASIHSGEYFHGPFEITEPGTPFILLQSSGRTRPL---DDRAIRFIERYQGKLQLI 294
Query: 263 SATKEFLQFLRDACDDAGALLVFDEVQCGL 292
A K +Q D D G E CGL
Sbjct: 295 DADKLGIQ---DLSTDVG------EYFCGL 315
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 23/117 (19%)
Query: 65 VMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVV 124
VMEA+ +L Y A G + Y G E++D++ IA+ D KA+
Sbjct: 42 VMEAQGSVLTNKY-------AEGYPGRRYYG-GCEFVDVTESIAI--------DRAKALF 85
Query: 125 DQANVLTHVSNMYYSIPQIELAKRLVACSFADRVF---FSNTGTEANEAAIKFARKF 178
HV+ +S PQ +A LVA D V S+ G + A + F+ KF
Sbjct: 86 GA----EHVNVQPHSGPQANMAVYLVALEMGDTVLGMNLSHGGHLTHGAPVNFSGKF 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,241,745
Number of Sequences: 62578
Number of extensions: 558830
Number of successful extensions: 1653
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1288
Number of HSP's gapped (non-prelim): 101
length of query: 451
length of database: 14,973,337
effective HSP length: 102
effective length of query: 349
effective length of database: 8,590,381
effective search space: 2998042969
effective search space used: 2998042969
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)