Query 013008
Match_columns 451
No_of_seqs 348 out of 2562
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 20:29:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atq_A 4-aminobutyrate transam 100.0 6.6E-73 2.3E-77 573.0 40.7 376 61-445 26-454 (456)
2 4ao9_A Beta-phenylalanine amin 100.0 4.2E-72 1.4E-76 564.6 30.0 374 33-448 39-448 (454)
3 4e3q_A Pyruvate transaminase; 100.0 8.6E-71 3E-75 559.5 39.5 381 62-448 24-470 (473)
4 3i5t_A Aminotransferase; pyrid 100.0 2.2E-63 7.5E-68 510.0 38.6 379 64-447 13-455 (476)
5 3hmu_A Aminotransferase, class 100.0 6.9E-63 2.4E-67 505.6 37.4 381 61-447 11-453 (472)
6 4ffc_A 4-aminobutyrate aminotr 100.0 6.6E-62 2.3E-66 496.4 40.2 379 61-448 26-451 (453)
7 3tfu_A Adenosylmethionine-8-am 100.0 1.3E-61 4.3E-66 494.5 36.9 385 61-450 29-457 (457)
8 3oks_A 4-aminobutyrate transam 100.0 2.5E-61 8.6E-66 491.9 38.5 376 61-445 23-450 (451)
9 3gju_A Putative aminotransfera 100.0 3.3E-61 1.1E-65 492.4 39.1 381 65-448 9-458 (460)
10 4a6r_A Omega transaminase; tra 100.0 1.5E-60 5.2E-65 487.3 35.0 363 80-447 32-450 (459)
11 3dod_A Adenosylmethionine-8-am 100.0 4.7E-60 1.6E-64 482.3 37.2 382 64-450 4-447 (448)
12 4a0g_A Adenosylmethionine-8-am 100.0 8E-61 2.7E-65 516.2 32.5 380 65-446 334-828 (831)
13 1z7d_A Ornithine aminotransfer 100.0 3.2E-59 1.1E-63 474.0 39.9 384 61-447 28-430 (433)
14 3n5m_A Adenosylmethionine-8-am 100.0 2.7E-59 9.1E-64 477.2 38.1 380 62-445 9-451 (452)
15 2oat_A Ornithine aminotransfer 100.0 7.1E-59 2.4E-63 472.2 40.6 382 61-445 39-438 (439)
16 3l44_A Glutamate-1-semialdehyd 100.0 1.8E-58 6E-63 468.6 37.1 385 39-448 5-432 (434)
17 3nx3_A Acoat, acetylornithine 100.0 3.6E-58 1.2E-62 460.5 38.1 370 70-445 8-394 (395)
18 3k28_A Glutamate-1-semialdehyd 100.0 1.3E-58 4.5E-63 469.0 35.2 385 37-447 2-428 (429)
19 2yky_A Beta-transaminase; tran 100.0 7.5E-63 2.6E-67 500.6 0.0 371 40-448 55-462 (465)
20 4e77_A Glutamate-1-semialdehyd 100.0 2.6E-57 9E-62 459.4 35.3 380 41-445 6-428 (429)
21 2pb2_A Acetylornithine/succiny 100.0 1.5E-56 5E-61 452.7 38.3 380 63-447 22-419 (420)
22 3fq8_A Glutamate-1-semialdehyd 100.0 9.5E-57 3.2E-61 455.0 35.4 381 40-445 4-426 (427)
23 3i4j_A Aminotransferase, class 100.0 7.2E-57 2.4E-61 456.3 34.2 372 72-446 3-428 (430)
24 3dxv_A Alpha-amino-epsilon-cap 100.0 6.6E-56 2.3E-60 450.4 34.9 358 80-447 25-426 (439)
25 2epj_A Glutamate-1-semialdehyd 100.0 1.6E-54 5.3E-59 439.7 34.1 380 41-447 11-432 (434)
26 2e7u_A Glutamate-1-semialdehyd 100.0 3.1E-54 1.1E-58 436.2 34.3 379 39-443 3-424 (424)
27 1zod_A DGD, 2,2-dialkylglycine 100.0 6.7E-54 2.3E-58 434.8 36.5 374 63-446 7-432 (433)
28 2cjg_A L-lysine-epsilon aminot 100.0 1.6E-54 5.5E-59 441.4 32.0 379 62-446 17-448 (449)
29 3ruy_A Ornithine aminotransfer 100.0 7.7E-53 2.6E-57 421.3 38.4 375 65-443 3-391 (392)
30 4adb_A Succinylornithine trans 100.0 2.5E-52 8.6E-57 419.2 41.8 374 70-448 11-402 (406)
31 1ohv_A 4-aminobutyrate aminotr 100.0 9.8E-54 3.3E-58 438.0 30.2 377 61-446 26-471 (472)
32 3a8u_X Omega-amino acid--pyruv 100.0 8.7E-53 3E-57 428.7 34.1 362 80-446 32-447 (449)
33 2cy8_A D-phgat, D-phenylglycin 100.0 5.6E-53 1.9E-57 430.6 32.1 378 39-448 11-437 (453)
34 2eo5_A 419AA long hypothetical 100.0 3.2E-52 1.1E-56 420.9 37.1 369 62-446 3-418 (419)
35 1s0a_A Adenosylmethionine-8-am 100.0 1.2E-50 4.1E-55 410.5 40.2 372 70-447 10-425 (429)
36 1sff_A 4-aminobutyrate aminotr 100.0 1E-49 3.5E-54 402.9 38.2 376 63-447 5-425 (426)
37 2ord_A Acoat, acetylornithine 100.0 2.6E-48 9E-53 389.1 37.1 363 76-445 18-396 (397)
38 1vef_A Acetylornithine/acetyl- 100.0 1.2E-47 4.2E-52 383.9 36.5 368 65-443 9-394 (395)
39 2eh6_A Acoat, acetylornithine 100.0 2.6E-46 9.1E-51 371.4 40.4 361 74-443 4-375 (375)
40 3l8a_A METC, putative aminotra 100.0 1.6E-39 5.6E-44 328.0 21.5 343 76-444 37-420 (421)
41 2w8t_A SPT, serine palmitoyltr 100.0 9.7E-37 3.3E-41 308.3 33.5 352 61-448 26-417 (427)
42 3tqx_A 2-amino-3-ketobutyrate 100.0 4.6E-35 1.6E-39 292.5 27.9 338 75-447 21-397 (399)
43 1fc4_A 2-amino-3-ketobutyrate 100.0 3.1E-34 1.1E-38 287.1 29.7 340 77-450 24-401 (401)
44 3dzz_A Putative pyridoxal 5'-p 100.0 2.1E-34 7.3E-39 286.9 24.9 340 82-447 11-390 (391)
45 3fdb_A Beta C-S lyase, putativ 100.0 2.3E-34 7.9E-39 285.4 21.8 328 85-445 10-375 (377)
46 1d2f_A MALY protein; aminotran 100.0 5.9E-33 2E-37 276.8 29.5 338 83-446 8-389 (390)
47 3kax_A Aminotransferase, class 100.0 3.4E-33 1.2E-37 277.4 26.3 338 81-443 6-382 (383)
48 3kki_A CAI-1 autoinducer synth 100.0 5E-34 1.7E-38 286.6 19.7 325 86-446 47-404 (409)
49 3a2b_A Serine palmitoyltransfe 100.0 1.5E-32 5.2E-37 274.6 29.4 331 79-446 25-392 (398)
50 1c7n_A Cystalysin; transferase 100.0 2.7E-33 9.2E-38 280.1 22.7 341 83-448 9-395 (399)
51 4dq6_A Putative pyridoxal phos 100.0 1.8E-33 6.1E-38 280.2 21.1 337 82-443 11-390 (391)
52 1bs0_A Protein (8-amino-7-oxon 100.0 3.6E-32 1.2E-36 270.5 30.2 337 70-442 12-383 (384)
53 3nra_A Aspartate aminotransfer 100.0 6.1E-33 2.1E-37 278.0 18.4 341 83-447 21-406 (407)
54 3aow_A Putative uncharacterize 100.0 1.1E-31 3.9E-36 272.8 27.2 324 97-447 75-446 (448)
55 2zc0_A Alanine glyoxylate tran 100.0 8.9E-32 3.1E-36 269.8 25.6 324 97-447 33-405 (407)
56 3b1d_A Betac-S lyase; HET: PLP 100.0 1.3E-34 4.3E-39 289.4 0.0 338 82-444 13-391 (392)
57 3ly1_A Putative histidinol-pho 100.0 4.5E-31 1.5E-35 259.6 25.3 316 87-445 5-351 (354)
58 2zyj_A Alpha-aminodipate amino 100.0 9.7E-32 3.3E-36 268.8 20.5 323 97-447 31-394 (397)
59 1yiz_A Kynurenine aminotransfe 100.0 6.8E-31 2.3E-35 265.3 26.8 323 99-444 38-427 (429)
60 1vp4_A Aminotransferase, putat 100.0 1.7E-31 5.7E-36 269.7 22.1 325 97-448 42-420 (425)
61 3euc_A Histidinol-phosphate am 100.0 5.2E-31 1.8E-35 260.5 24.3 309 97-444 29-366 (367)
62 3h14_A Aminotransferase, class 100.0 7.9E-31 2.7E-35 261.6 25.6 316 95-447 28-383 (391)
63 1j32_A Aspartate aminotransfer 100.0 3E-30 1E-34 257.0 28.5 324 96-446 28-387 (388)
64 3jtx_A Aminotransferase; NP_28 100.0 4.4E-31 1.5E-35 263.7 22.1 335 79-443 11-395 (396)
65 2x5d_A Probable aminotransfera 100.0 2.6E-30 8.9E-35 259.8 26.8 327 95-448 34-400 (412)
66 3dyd_A Tyrosine aminotransfera 100.0 3E-30 1E-34 260.7 27.4 323 94-447 50-425 (427)
67 3b46_A Aminotransferase BNA3; 100.0 8.3E-31 2.9E-35 266.4 23.3 323 96-441 55-442 (447)
68 3ftb_A Histidinol-phosphate am 100.0 3.1E-30 1.1E-34 254.1 26.6 324 81-445 8-360 (361)
69 3ezs_A Aminotransferase ASPB; 100.0 1E-30 3.5E-35 259.2 23.1 315 95-446 21-375 (376)
70 3ffh_A Histidinol-phosphate am 100.0 3.4E-30 1.2E-34 254.3 26.6 304 97-443 31-363 (363)
71 2z61_A Probable aspartate amin 100.0 2.6E-30 9E-35 255.8 24.7 311 96-444 27-369 (370)
72 1lc5_A COBD, L-threonine-O-3-p 100.0 1.7E-30 5.9E-35 256.7 23.0 310 94-447 20-361 (364)
73 2dou_A Probable N-succinyldiam 100.0 9.4E-31 3.2E-35 259.6 20.6 316 96-443 23-375 (376)
74 3g0t_A Putative aminotransfera 100.0 2.3E-30 7.7E-35 262.0 21.7 331 86-445 32-436 (437)
75 1gd9_A Aspartate aminotransfer 100.0 9.2E-30 3.1E-34 253.6 25.6 324 98-447 26-387 (389)
76 1o4s_A Aspartate aminotransfer 100.0 1.7E-29 5.7E-34 252.0 26.7 322 96-444 39-387 (389)
77 1xi9_A Putative transaminase; 100.0 1.4E-29 5E-34 253.8 25.3 328 95-447 35-404 (406)
78 3ele_A Amino transferase; RER0 100.0 2E-29 6.8E-34 251.9 26.1 325 97-447 34-397 (398)
79 1v2d_A Glutamine aminotransfer 100.0 1.1E-29 3.7E-34 252.4 23.8 317 100-449 27-374 (381)
80 3fvs_A Kynurenine--oxoglutarat 100.0 3.1E-29 1.1E-33 252.4 26.7 329 98-445 28-421 (422)
81 3piu_A 1-aminocyclopropane-1-c 100.0 4.6E-30 1.6E-34 259.8 20.7 326 93-448 31-434 (435)
82 1u08_A Hypothetical aminotrans 100.0 5.9E-29 2E-33 247.5 27.7 316 99-441 31-385 (386)
83 2gb3_A Aspartate aminotransfer 100.0 5.1E-29 1.7E-33 250.1 27.4 316 96-448 41-404 (409)
84 2o1b_A Aminotransferase, class 100.0 4.6E-30 1.6E-34 257.4 19.3 321 96-445 45-402 (404)
85 3cq5_A Histidinol-phosphate am 100.0 3.6E-29 1.2E-33 247.7 25.0 312 101-444 33-366 (369)
86 3op7_A Aminotransferase class 100.0 5.5E-29 1.9E-33 246.7 25.8 277 142-448 65-373 (375)
87 3hdo_A Histidinol-phosphate am 100.0 2.5E-29 8.4E-34 248.0 23.0 310 95-444 23-353 (360)
88 2o0r_A RV0858C (N-succinyldiam 100.0 4.4E-29 1.5E-33 250.7 23.6 321 100-447 27-397 (411)
89 2bwn_A 5-aminolevulinate synth 100.0 4.6E-28 1.6E-32 242.3 30.5 318 96-446 44-400 (401)
90 3e2y_A Kynurenine-oxoglutarate 100.0 1.7E-28 6E-33 245.9 25.7 325 98-441 23-408 (410)
91 3fkd_A L-threonine-O-3-phospha 100.0 1.8E-28 6.1E-33 240.8 23.6 316 85-445 2-341 (350)
92 3qgu_A LL-diaminopimelate amin 100.0 7.4E-29 2.5E-33 252.0 21.4 328 96-445 67-439 (449)
93 3get_A Histidinol-phosphate am 100.0 2.5E-28 8.5E-33 241.1 22.5 307 98-443 30-364 (365)
94 1bw0_A TAT, protein (tyrosine 100.0 5.2E-28 1.8E-32 243.1 23.1 327 98-447 33-414 (416)
95 1kmj_A Selenocysteine lyase; p 100.0 5.3E-27 1.8E-31 234.3 30.0 322 96-446 20-405 (406)
96 2q7w_A Aspartate aminotransfer 100.0 3.1E-28 1.1E-32 242.9 20.9 319 92-443 20-396 (396)
97 2x5f_A Aspartate_tyrosine_phen 100.0 3.9E-29 1.3E-33 252.6 12.9 322 98-446 47-429 (430)
98 1iay_A ACC synthase 2, 1-amino 100.0 8.4E-28 2.9E-32 242.6 22.3 323 99-446 37-427 (428)
99 1b5p_A Protein (aspartate amin 100.0 4.1E-27 1.4E-31 234.3 26.7 319 97-444 30-383 (385)
100 1fg7_A Histidinol phosphate am 100.0 7.7E-28 2.6E-32 237.1 21.0 302 98-441 29-353 (356)
101 2r2n_A Kynurenine/alpha-aminoa 100.0 4.9E-27 1.7E-31 236.9 26.4 287 138-446 80-424 (425)
102 1ajs_A Aspartate aminotransfer 100.0 3.2E-28 1.1E-32 244.4 17.4 324 96-446 28-411 (412)
103 3ei9_A LL-diaminopimelate amin 100.0 9.6E-28 3.3E-32 242.5 19.9 327 96-443 54-425 (432)
104 3ez1_A Aminotransferase MOCR f 100.0 2.8E-28 9.6E-33 245.7 15.7 329 100-447 27-416 (423)
105 1elu_A L-cysteine/L-cystine C- 100.0 2.9E-27 9.8E-32 235.1 21.7 313 96-441 15-387 (390)
106 3f9t_A TDC, L-tyrosine decarbo 100.0 2.4E-26 8.3E-31 228.5 26.7 312 114-444 41-396 (397)
107 3rq1_A Aminotransferase class 99.9 3.8E-27 1.3E-31 237.0 20.4 326 97-447 37-416 (418)
108 3d6k_A Putative aminotransfera 99.9 1.3E-27 4.6E-32 240.9 16.9 338 100-448 34-420 (422)
109 1t3i_A Probable cysteine desul 99.9 3.5E-26 1.2E-30 229.5 27.1 323 96-448 25-415 (420)
110 3ppl_A Aspartate aminotransfer 99.9 7.3E-28 2.5E-32 243.1 14.8 334 100-447 35-421 (427)
111 3t18_A Aminotransferase class 99.9 6.8E-27 2.3E-31 234.8 21.4 323 97-447 36-411 (413)
112 3asa_A LL-diaminopimelate amin 99.9 7.2E-27 2.5E-31 233.8 21.5 316 97-446 32-393 (400)
113 2ay1_A Aroat, aromatic amino a 99.9 1E-27 3.6E-32 239.1 15.3 314 97-442 25-392 (394)
114 3g7q_A Valine-pyruvate aminotr 99.9 1.6E-26 5.3E-31 232.2 22.4 282 142-448 81-415 (417)
115 2dr1_A PH1308 protein, 386AA l 99.9 5E-26 1.7E-30 225.8 25.3 309 98-449 20-382 (386)
116 3lvm_A Cysteine desulfurase; s 99.9 5.6E-26 1.9E-30 228.6 23.9 316 95-448 20-401 (423)
117 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 7.2E-27 2.5E-31 230.8 17.0 309 98-446 9-370 (371)
118 1eg5_A Aminotransferase; PLP-d 99.9 2.3E-25 7.8E-30 220.8 25.6 318 99-449 3-379 (384)
119 3if2_A Aminotransferase; YP_26 99.9 5.3E-26 1.8E-30 230.5 21.1 284 142-448 89-442 (444)
120 1qz9_A Kynureninase; kynurenin 99.9 1E-24 3.5E-29 218.9 29.2 320 96-447 27-403 (416)
121 3ke3_A Putative serine-pyruvat 99.9 1.3E-25 4.6E-30 223.0 21.7 320 91-447 5-377 (379)
122 1vjo_A Alanine--glyoxylate ami 99.9 6.7E-26 2.3E-30 225.8 19.0 310 96-443 32-392 (393)
123 3p1t_A Putative histidinol-pho 99.9 8.6E-25 2.9E-29 213.1 25.3 299 96-443 14-334 (337)
124 1ax4_A Tryptophanase; tryptoph 99.9 2.8E-25 9.7E-30 226.6 22.3 328 96-448 41-443 (467)
125 3mad_A Sphingosine-1-phosphate 99.9 2.6E-24 8.9E-29 222.3 29.4 316 114-450 107-473 (514)
126 4f4e_A Aromatic-amino-acid ami 99.9 8.4E-25 2.9E-29 220.2 25.0 315 98-443 49-419 (420)
127 3cai_A Possible aminotransfera 99.9 7E-24 2.4E-28 212.1 30.9 307 97-441 26-404 (406)
128 3zrp_A Serine-pyruvate aminotr 99.9 3.3E-25 1.1E-29 219.6 21.0 296 115-447 13-364 (384)
129 1svv_A Threonine aldolase; str 99.9 2E-25 6.9E-30 219.1 19.1 306 100-446 15-358 (359)
130 1v72_A Aldolase; PLP-dependent 99.9 5.3E-25 1.8E-29 215.9 21.8 313 98-447 7-354 (356)
131 3f6t_A Aspartate aminotransfer 99.9 1.9E-25 6.4E-30 231.6 18.6 322 110-447 111-526 (533)
132 3f0h_A Aminotransferase; RER07 99.9 5.3E-25 1.8E-29 217.9 20.8 301 115-445 30-373 (376)
133 3kgw_A Alanine-glyoxylate amin 99.9 1.5E-25 5.1E-30 222.8 16.4 304 115-449 34-391 (393)
134 2rfv_A Methionine gamma-lyase; 99.9 1.4E-24 4.8E-29 217.0 23.1 298 116-442 39-396 (398)
135 1cs1_A CGS, protein (cystathio 99.9 2.9E-24 9.9E-29 213.8 25.1 280 134-442 46-383 (386)
136 1m32_A 2-aminoethylphosphonate 99.9 1.2E-24 4.3E-29 213.9 21.6 312 99-446 4-365 (366)
137 3fsl_A Aromatic-amino-acid ami 99.9 1.8E-24 6.3E-29 215.7 22.9 315 98-443 26-397 (397)
138 1yaa_A Aspartate aminotransfer 99.9 5.7E-25 1.9E-29 220.7 18.7 324 96-445 27-410 (412)
139 2dkj_A Serine hydroxymethyltra 99.9 5.5E-25 1.9E-29 220.1 18.3 316 98-445 23-387 (407)
140 3nnk_A Ureidoglycine-glyoxylat 99.9 2E-24 6.9E-29 216.1 20.4 299 115-447 24-391 (411)
141 4hvk_A Probable cysteine desul 99.9 1.3E-23 4.4E-28 207.7 25.3 310 100-448 3-375 (382)
142 1uu1_A Histidinol-phosphate am 99.9 8.5E-25 2.9E-29 213.4 15.6 296 98-442 19-334 (335)
143 3qhx_A Cystathionine gamma-syn 99.9 6.4E-24 2.2E-28 211.9 22.2 277 132-439 58-391 (392)
144 4eb5_A Probable cysteine desul 99.9 5.3E-23 1.8E-27 203.7 28.5 311 100-448 3-375 (382)
145 2z9v_A Aspartate aminotransfer 99.9 1E-23 3.5E-28 209.8 23.2 314 97-447 8-372 (392)
146 2oqx_A Tryptophanase; lyase, p 99.9 9.6E-25 3.3E-29 222.7 15.9 332 97-448 40-444 (467)
147 1jg8_A L-ALLO-threonine aldola 99.9 2.3E-23 7.9E-28 203.9 25.2 317 98-446 3-346 (347)
148 3e9k_A Kynureninase; kynurenin 99.9 1.4E-24 4.8E-29 221.5 17.0 324 96-447 66-462 (465)
149 1e5e_A MGL, methionine gamma-l 99.9 2.3E-23 7.9E-28 208.7 25.2 279 136-447 58-396 (404)
150 2oga_A Transaminase; PLP-depen 99.9 9.9E-24 3.4E-28 210.9 22.2 309 98-448 30-398 (399)
151 2ez2_A Beta-tyrosinase, tyrosi 99.9 1.3E-23 4.4E-28 213.7 23.2 326 96-448 40-433 (456)
152 2huf_A Alanine glyoxylate amin 99.9 5.5E-24 1.9E-28 211.8 20.0 317 95-448 16-385 (393)
153 2cb1_A O-acetyl homoserine sul 99.9 6.8E-23 2.3E-27 205.8 27.7 296 111-441 29-411 (412)
154 1gc0_A Methionine gamma-lyase; 99.9 5.5E-23 1.9E-27 205.5 26.7 279 135-442 60-397 (398)
155 3vax_A Putative uncharacterize 99.9 6.8E-24 2.3E-28 211.7 17.6 317 92-445 15-399 (400)
156 2yrr_A Aminotransferase, class 99.9 1.1E-23 3.6E-28 206.2 18.5 293 115-445 11-352 (353)
157 3acz_A Methionine gamma-lyase; 99.9 8.2E-23 2.8E-27 203.7 24.9 296 112-444 32-387 (389)
158 1iug_A Putative aspartate amin 99.9 2E-23 6.9E-28 204.4 20.1 293 115-447 12-349 (352)
159 3isl_A Purine catabolism prote 99.9 2.6E-23 9E-28 208.4 21.3 303 112-447 15-391 (416)
160 3lws_A Aromatic amino acid bet 99.9 7.9E-24 2.7E-28 208.1 16.3 314 99-443 4-356 (357)
161 2ch1_A 3-hydroxykynurenine tra 99.9 2.3E-23 7.9E-28 207.5 19.5 302 115-447 29-384 (396)
162 3mc6_A Sphingosine-1-phosphate 99.9 5.3E-23 1.8E-27 211.6 22.7 318 114-450 75-441 (497)
163 3ndn_A O-succinylhomoserine su 99.9 2.3E-23 7.8E-28 209.1 18.8 279 132-443 73-413 (414)
164 2vi8_A Serine hydroxymethyltra 99.9 7.1E-23 2.4E-27 204.6 21.2 318 98-447 24-388 (405)
165 1pff_A Methionine gamma-lyase; 99.9 1.5E-22 5.1E-27 196.9 22.7 269 144-442 2-330 (331)
166 3a9z_A Selenocysteine lyase; P 99.9 1.5E-22 5.1E-27 204.3 23.2 331 96-448 17-430 (432)
167 3nmy_A Xometc, cystathionine g 99.9 1E-22 3.6E-27 203.4 19.7 233 132-393 59-321 (400)
168 3tcm_A Alanine aminotransferas 99.9 8.5E-23 2.9E-27 210.2 19.3 314 115-448 107-496 (500)
169 3pj0_A LMO0305 protein; struct 99.9 3.5E-23 1.2E-27 203.5 15.4 299 115-442 27-358 (359)
170 3uwc_A Nucleotide-sugar aminot 99.9 7E-23 2.4E-27 202.5 17.6 285 119-446 21-371 (374)
171 2fnu_A Aminotransferase; prote 99.9 4.5E-22 1.5E-26 196.6 23.2 298 114-447 10-373 (375)
172 4eu1_A Mitochondrial aspartate 99.9 3.2E-23 1.1E-27 207.8 15.0 317 98-443 41-408 (409)
173 1mdo_A ARNB aminotransferase; 99.9 7.1E-22 2.4E-26 196.6 24.2 292 116-446 19-386 (393)
174 2po3_A 4-dehydrase; external a 99.9 2.5E-21 8.4E-26 195.1 28.1 303 102-447 20-387 (424)
175 2bkw_A Alanine-glyoxylate amin 99.9 1E-22 3.6E-27 201.8 17.5 298 115-446 16-384 (385)
176 3meb_A Aspartate aminotransfer 99.9 1.1E-22 3.7E-27 206.5 17.5 322 100-446 51-444 (448)
177 3ihj_A Alanine aminotransferas 99.9 1E-21 3.6E-26 201.8 24.0 310 115-448 102-495 (498)
178 2zy4_A L-aspartate beta-decarb 99.9 1.3E-22 4.6E-27 210.4 17.1 328 100-447 106-523 (546)
179 3ecd_A Serine hydroxymethyltra 99.9 8.9E-22 3E-26 197.8 22.4 315 100-446 34-397 (425)
180 1ibj_A CBL, cystathionine beta 99.9 2.1E-22 7.4E-27 204.7 17.9 297 113-445 102-461 (464)
181 7aat_A Aspartate aminotransfer 99.9 6.9E-22 2.4E-26 197.4 21.2 318 100-443 30-400 (401)
182 1wyu_B Glycine dehydrogenase s 99.9 7.3E-21 2.5E-25 194.5 29.1 305 112-445 75-440 (474)
183 3frk_A QDTB; aminotransferase, 99.9 6.9E-22 2.4E-26 195.5 20.8 290 111-444 7-366 (373)
184 1b9h_A AHBA synthase, protein 99.9 1.8E-21 6.1E-26 193.5 23.8 299 116-445 16-387 (388)
185 3h7f_A Serine hydroxymethyltra 99.9 5.9E-22 2E-26 201.1 19.9 306 115-446 57-414 (447)
186 2aeu_A Hypothetical protein MJ 99.9 8.6E-22 2.9E-26 195.2 19.9 304 97-447 26-372 (374)
187 3gbx_A Serine hydroxymethyltra 99.9 1.1E-21 3.6E-26 196.9 20.3 304 115-446 42-396 (420)
188 1qgn_A Protein (cystathionine 99.9 1.9E-21 6.3E-26 196.5 20.7 280 132-445 106-444 (445)
189 3nyt_A Aminotransferase WBPE; 99.9 1.9E-21 6.5E-26 192.1 20.0 293 112-442 7-360 (367)
190 3dr4_A Putative perosamine syn 99.9 1.3E-21 4.3E-26 194.9 18.5 285 116-443 35-390 (391)
191 1n8p_A Cystathionine gamma-lya 99.9 1.9E-21 6.4E-26 194.1 19.3 276 134-442 49-391 (393)
192 3n0l_A Serine hydroxymethyltra 99.9 1.1E-20 3.7E-25 189.5 24.3 310 100-446 27-389 (417)
193 2c81_A Glutamine-2-deoxy-scyll 99.9 1.8E-20 6.2E-25 188.3 25.3 303 115-447 14-415 (418)
194 3cog_A Cystathionine gamma-lya 99.9 8.3E-21 2.8E-25 190.0 21.8 276 135-442 62-398 (403)
195 2ctz_A O-acetyl-L-homoserine s 99.9 1.8E-20 6.1E-25 188.7 24.0 278 132-443 50-420 (421)
196 3k7y_A Aspartate aminotransfer 99.9 4E-21 1.4E-25 192.1 19.1 318 99-445 30-404 (405)
197 3ffr_A Phosphoserine aminotran 99.9 1.7E-20 5.8E-25 184.1 20.3 290 115-443 15-361 (362)
198 2qma_A Diaminobutyrate-pyruvat 99.9 1.2E-19 4.1E-24 186.6 25.9 326 96-446 99-496 (497)
199 1o69_A Aminotransferase; struc 99.8 8.9E-20 3E-24 181.9 22.5 293 116-444 11-385 (394)
200 3b8x_A WBDK, pyridoxamine 5-ph 99.8 1.1E-18 3.7E-23 173.6 28.5 299 111-439 7-389 (390)
201 2fq6_A Cystathionine beta-lyas 99.8 1.5E-19 5.1E-24 181.3 20.9 280 131-441 73-413 (415)
202 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.8 1.8E-18 6E-23 174.9 27.1 312 96-444 29-434 (437)
203 4h51_A Aspartate aminotransfer 99.8 7.8E-19 2.7E-23 175.8 21.6 308 117-448 65-419 (420)
204 3ri6_A O-acetylhomoserine sulf 99.8 7.9E-19 2.7E-23 176.6 20.0 166 133-327 75-242 (430)
205 3ht4_A Aluminum resistance pro 99.8 1.1E-17 3.6E-22 168.5 25.4 205 115-337 36-257 (431)
206 2okj_A Glutamate decarboxylase 99.8 1.5E-17 5.3E-22 171.1 26.8 289 142-446 134-502 (504)
207 2x3l_A ORN/Lys/Arg decarboxyla 99.8 2E-19 6.7E-24 182.3 12.2 275 138-446 55-353 (446)
208 2dgk_A GAD-beta, GADB, glutama 99.8 1.4E-17 4.9E-22 169.0 25.6 315 115-449 54-437 (452)
209 1w23_A Phosphoserine aminotran 99.8 1.8E-18 6.1E-23 169.8 16.0 297 114-445 13-359 (360)
210 3hbx_A GAD 1, glutamate decarb 99.8 5.5E-17 1.9E-21 166.8 27.3 320 114-450 67-448 (502)
211 2jis_A Cysteine sulfinic acid 99.8 3.8E-17 1.3E-21 168.7 26.0 289 142-445 150-514 (515)
212 3bwn_A AT1G70560, L-tryptophan 99.8 6E-19 2E-23 175.8 10.7 259 143-445 71-386 (391)
213 2z67_A O-phosphoseryl-tRNA(SEC 99.8 2.6E-17 8.9E-22 167.3 20.5 278 142-443 135-455 (456)
214 2hox_A ALLIIN lyase 1; cystein 99.8 1.5E-18 5.1E-23 174.9 10.4 312 96-444 54-423 (427)
215 2c0r_A PSAT, phosphoserine ami 99.8 2.3E-17 7.9E-22 162.2 18.4 294 114-446 14-361 (362)
216 1rv3_A Serine hydroxymethyltra 99.7 1.5E-17 5.2E-22 170.2 16.5 304 114-445 55-430 (483)
217 3ju7_A Putative PLP-dependent 99.7 7.6E-17 2.6E-21 159.7 20.9 298 115-445 14-374 (377)
218 2a7v_A Serine hydroxymethyltra 99.7 3E-17 1E-21 167.1 16.8 303 115-445 66-440 (490)
219 3vp6_A Glutamate decarboxylase 99.7 1.9E-16 6.7E-21 163.0 21.5 315 115-446 107-505 (511)
220 2fyf_A PSAT, phosphoserine ami 99.7 2.7E-17 9.1E-22 164.1 14.4 293 115-445 51-397 (398)
221 3jzl_A Putative cystathionine 99.7 2E-15 6.8E-20 150.7 25.5 200 115-338 30-252 (409)
222 3i16_A Aluminum resistance pro 99.7 3.1E-15 1.1E-19 149.9 24.9 201 116-338 45-269 (427)
223 3hvy_A Cystathionine beta-lyas 99.7 1.7E-15 5.6E-20 151.9 22.8 202 115-338 45-269 (427)
224 1js3_A DDC;, DOPA decarboxylas 99.7 1.2E-15 4.2E-20 156.1 20.9 315 119-448 90-476 (486)
225 4e1o_A HDC, histidine decarbox 99.7 9.8E-15 3.3E-19 149.2 26.9 289 142-447 120-479 (481)
226 3k40_A Aromatic-L-amino-acid d 99.7 9E-15 3.1E-19 149.2 23.4 294 142-448 115-473 (475)
227 1c4k_A Protein (ornithine deca 99.7 1E-14 3.6E-19 154.9 23.6 286 140-447 173-567 (730)
228 1wyu_A Glycine dehydrogenase ( 99.6 1.1E-14 3.7E-19 147.1 19.7 268 141-443 109-437 (438)
229 2vyc_A Biodegradative arginine 99.5 4.4E-13 1.5E-17 143.6 20.9 284 141-447 206-606 (755)
230 3e77_A Phosphoserine aminotran 99.4 2.7E-12 9.4E-17 126.2 15.7 300 112-445 21-374 (377)
231 3n75_A LDC, lysine decarboxyla 99.4 6E-12 2.1E-16 132.8 16.5 279 141-445 196-559 (715)
232 3m5u_A Phosphoserine aminotran 99.3 6.2E-11 2.1E-15 116.0 20.3 285 115-445 16-359 (361)
233 3qm2_A Phosphoserine aminotran 99.3 6.5E-12 2.2E-16 124.1 12.8 307 98-445 27-384 (386)
234 3bc8_A O-phosphoseryl-tRNA(SEC 99.2 2.3E-10 7.8E-15 114.1 17.0 179 142-337 100-289 (450)
235 3hl2_A O-phosphoseryl-tRNA(SEC 99.2 2.3E-09 7.8E-14 105.9 20.9 272 155-448 134-463 (501)
236 3ou5_A Serine hydroxymethyltra 98.9 1.3E-07 4.5E-12 93.0 19.2 305 115-444 66-439 (490)
237 1vhx_A Putative holliday junct 61.7 13 0.00046 30.4 5.6 57 234-290 43-101 (150)
238 1tks_A 3,4-dihydroxy-2-butanon 55.8 13 0.00044 32.2 4.5 38 244-285 157-194 (204)
239 3mio_A DHBP synthase, 3,4-dihy 50.8 20 0.00068 31.1 5.0 38 244-285 156-194 (206)
240 4gqr_A Pancreatic alpha-amylas 43.5 38 0.0013 33.1 6.6 54 236-289 26-99 (496)
241 1g57_A DHBP synthase, 3,4-dihy 43.1 28 0.00097 30.4 4.8 37 244-285 165-201 (217)
242 1snn_A DHBP synthase, 3,4-dihy 42.9 28 0.00094 30.6 4.7 37 244-285 176-212 (227)
243 3v7e_A Ribosome-associated pro 40.8 75 0.0026 22.8 6.2 50 235-292 16-65 (82)
244 3bzy_B ESCU; auto cleavage pro 35.4 21 0.00072 26.0 2.3 21 269-289 29-49 (83)
245 1k4i_A 3,4-dihydroxy-2-butanon 34.4 47 0.0016 29.3 4.8 38 244-285 165-212 (233)
246 3io5_A Recombination and repai 33.2 2.5E+02 0.0085 26.2 9.8 48 242-289 107-172 (333)
247 3t7y_A YOP proteins translocat 30.3 28 0.00097 26.2 2.3 22 268-289 43-64 (97)
248 2vt1_B Surface presentation of 29.6 30 0.001 25.8 2.3 22 268-289 28-49 (93)
249 1ht6_A AMY1, alpha-amylase iso 29.4 48 0.0017 31.8 4.6 45 246-290 34-92 (405)
250 3c01_E Surface presentation of 28.8 31 0.0011 26.0 2.3 22 268-289 28-49 (98)
251 1jae_A Alpha-amylase; glycosid 26.9 82 0.0028 30.9 5.8 49 242-290 32-98 (471)
252 3rcm_A TATD family hydrolase; 26.8 3.5E+02 0.012 24.3 10.0 101 154-286 30-133 (287)
253 3o63_A Probable thiamine-phosp 26.5 45 0.0015 29.7 3.4 51 235-287 46-103 (243)
254 1k7c_A Rhamnogalacturonan acet 24.2 90 0.0031 27.0 5.0 39 246-284 125-167 (233)
255 1zja_A Trehalulose synthase; s 23.1 69 0.0024 32.2 4.5 59 234-292 30-105 (557)
256 2aif_A Ribosomal protein L7A; 22.9 1.4E+02 0.0049 23.7 5.5 44 236-286 47-90 (135)
257 3bh0_A DNAB-like replicative h 22.2 1.1E+02 0.0038 28.0 5.5 52 234-285 163-226 (315)
258 2lbw_A H/ACA ribonucleoprotein 21.9 78 0.0027 24.6 3.7 47 236-289 26-72 (121)
259 1gff_3 Bacteriophage G4 capsid 21.8 37 0.0013 18.0 1.1 15 86-100 11-25 (26)
260 3pzt_A Endoglucanase; alpha/be 21.8 58 0.002 30.3 3.4 22 266-287 104-125 (327)
261 3jyw_G 60S ribosomal protein L 21.6 81 0.0028 24.3 3.6 51 235-292 30-80 (113)
262 3e2i_A Thymidine kinase; Zn-bi 21.2 2.8E+02 0.0096 24.1 7.4 51 234-292 90-140 (219)
263 2afr_A Cobalamin biosynthesis 21.1 78 0.0027 27.8 3.8 50 305-361 157-216 (231)
264 4aee_A Alpha amylase, catalyti 20.8 63 0.0022 33.6 3.7 56 234-289 263-334 (696)
265 7a3h_A Endoglucanase; hydrolas 20.2 66 0.0023 29.4 3.4 23 266-288 79-101 (303)
266 3vup_A Beta-1,4-mannanase; TIM 20.1 65 0.0022 29.1 3.3 22 267-288 90-111 (351)
No 1
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=6.6e-73 Score=573.00 Aligned_cols=376 Identities=34% Similarity=0.566 Sum_probs=324.8
Q ss_pred chHHHHHHHHhcccccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CC
Q 013008 61 NNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YY 138 (451)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~ 138 (451)
+++++.++..++...++. ++|+++++++|+||||.|||+||||++++++.++||+||+|++|+.+|++++.+.... .+
T Consensus 26 ~s~~l~~r~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~ 105 (456)
T 4atq_A 26 KSQALAERRSAVVAAGVASGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTP 105 (456)
T ss_dssp HHHHHHHHHHHHBCTTCCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccC
Confidence 455555555555444433 4799999999999999999999999999999999999999999999999998775443 35
Q ss_pred CHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC
Q 013008 139 SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH 215 (451)
Q Consensus 139 ~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (451)
++...+|+++|++..+ .++++|+|||+|||+.|||+||.+|+ |++||.|+++|||++.+++++++...
T Consensus 106 ~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~---------r~~ii~~~~~yHG~t~~als~t~~~~ 176 (456)
T 4atq_A 106 YEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATG---------RDAVVAFDHAYHGRTNLTMALTAKAM 176 (456)
T ss_dssp CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred cHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhc---------CCeEEEEecccCCccccccccccCcc
Confidence 6778899999999985 67899999999999999999999984 88999999999999999998876543
Q ss_pred -cCCCCcCCCCCeeEeeCC-----------CHHH-------HHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHH
Q 013008 216 -YRSPFEPVMPGVNFVEYG-----------NIEA-------TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (451)
Q Consensus 216 -~~~~~~~~~~~~~~~~~~-----------d~~~-------le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (451)
+...+.|..+++..+|++ +.+. +++.+.++++++||+||+++++|.++|+++||++|+++|
T Consensus 177 ~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc 256 (456)
T 4atq_A 177 PYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWA 256 (456)
T ss_dssp TTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred ccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHH
Confidence 455566777888777654 2333 333344568999999999999999999999999999999
Q ss_pred HHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHH
Q 013008 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAI 356 (451)
Q Consensus 277 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~ 356 (451)
++||++||+|||+|||||+|++|+++++|+.||++|+||+++||+|+|++++++++++.+.+..|++||++||++|+|++
T Consensus 257 ~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaal 336 (456)
T 4atq_A 257 KEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAAL 336 (456)
T ss_dssp HHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHH
T ss_pred hhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHhcChHHHHH--------------HHhC-----CCCcceecccceeEEEEecC---------ChHHHHHHHHHCCc
Q 013008 357 AVLDKISNPAFLAS--------------KLAR-----NPHVKDVRGLGLIIGIEFDV---------SATPVVDACRDSGL 408 (451)
Q Consensus 357 aal~~~~~~~~~~~--------------~~~~-----~~~~~~v~g~G~~~~~~~~~---------~~~~~~~~l~~~Gv 408 (451)
++|++++++++.++ +.++ ++.+.+|||.|+|+++++.. ...++.+.|+++|+
T Consensus 337 a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gv 416 (456)
T 4atq_A 337 AAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGV 416 (456)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTE
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988777655 3333 35788999999999999931 13568899999999
Q ss_pred eeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 409 LVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 409 ~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
++.+++. ++++||+||+++|+|+||+++++|+++|+.
T Consensus 417 l~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 417 IILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp ECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 9988765 689999999999999999999999999975
No 2
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=4.2e-72 Score=564.63 Aligned_cols=374 Identities=26% Similarity=0.352 Sum_probs=325.9
Q ss_pred cCCcchhhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccC
Q 013008 33 KRRPMVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNAL 112 (451)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~l 112 (451)
.++| .|.++ |++|++++|||++++++. |.++|+++++|+|+||||+|||+||||++++++.+|
T Consensus 39 ~~~p----~s~~~-~~~a~~~~pgg~~~~~~~------------~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~l 101 (454)
T 4ao9_A 39 DANP----ASQRQ-FEAQARYMPGANSRSVLF------------YAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVY 101 (454)
T ss_dssp HHCH----HHHHH-HHHHTTTSGGGCSSGGGC------------CSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTT
T ss_pred hcCc----HhHHH-HHHHhhhCCCCCCCCccc------------cCCCCccEEEeecCEEEECCCCEEEEccccHHhhcc
Confidence 6667 55666 999999999999888763 468899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008 113 GHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (451)
Q Consensus 113 G~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~ 191 (451)
||+||+|++|+.+|+++..+. ..++....+|+++|+++++ .++|+|+|||+|||+.|||++|.||+ |+
T Consensus 102 GH~hp~v~~Av~~q~~~~~~~--~~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tg---------r~ 170 (454)
T 4ao9_A 102 GHSAPEIRDAVIEAMQGGINL--TGHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTG---------RR 170 (454)
T ss_dssp CSCCHHHHHHHHHHHHTCSCC--CSEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHT---------CC
T ss_pred cCCCHHHHHHHHHHHhcCCCc--cCCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhccc---------CC
Confidence 999999999999999886543 2344557899999999986 89999999999999999999999985 88
Q ss_pred eEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHHH
Q 013008 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFL 269 (451)
Q Consensus 192 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l 269 (451)
+||.|+++|||++....+.++... ...++..+|+||+++++++++ .+++++||+||+++++|+++|+++||
T Consensus 171 ~ii~~~~~yHG~t~~~~~~~~~~~-------~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL 243 (454)
T 4ao9_A 171 KIVVFSGGYHGGVLGFGARPSPTT-------VPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFL 243 (454)
T ss_dssp EEEEETTCBCSTTCBBSSSBCTTS-------CCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHH
T ss_pred eEEEEeCCcCCccccccccccCcc-------CCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhH
Confidence 999999999999877655443211 123456789999999999997 45799999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCC----CccCCC
Q 013008 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG----DHGSTF 345 (451)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~----~~~~t~ 345 (451)
++|+++|++||++||+|||+| ||+|.+++++++|+.||++|++|++|||+|+|++++++++++.+.+. .|++||
T Consensus 244 ~~lr~lc~~~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~ 321 (454)
T 4ao9_A 244 QALRESATQVGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTF 321 (454)
T ss_dssp HHHHHHHHHHTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTT
T ss_pred HHHHHHHhhcCCEEEEECCCc--CCCccccchhccCCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCC
Confidence 999999999999999999999 59999999999999999999999999999999999999999998653 588999
Q ss_pred CCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC------------C---h
Q 013008 346 AGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV------------S---A 396 (451)
Q Consensus 346 ~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~------------~---~ 396 (451)
++||++|+|++++|+.+++++++++ +.++++.+..+++.|+|++++|.. + .
T Consensus 322 ~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~ 401 (454)
T 4ao9_A 322 NNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLR 401 (454)
T ss_dssp TTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHH
Confidence 9999999999999999998887765 345567778899999999998820 1 2
Q ss_pred HHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 397 TPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 397 ~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
..++..|+++||++.|.+ ++.+++.+|++|||+++++|++++++...
T Consensus 402 ~~~~~~ll~~Gv~~~p~~-----~~~~s~~~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 402 QLLFFHLLNEDIYSSPRG-----FVVLSLPLTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp HHHHHHHHHTTEECCTTC-----EEECCTTCCHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHCCEEEcCCC-----CEEEeCCCCHHHHHHHHHHHHHHHHhccc
Confidence 357788999999998764 34578889999999999999999998754
No 3
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=8.6e-71 Score=559.49 Aligned_cols=381 Identities=26% Similarity=0.454 Sum_probs=329.1
Q ss_pred hHHHHHHHHhcccccCCC-------CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc
Q 013008 62 NKEVMEAEKKLLVGTYNR-------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS 134 (451)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~-------~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~ 134 (451)
.+.+.+++.++.+++|.. .|++++||+|+||||.|||+||||.++++++++||+||+|.+|+.+|++++.+..
T Consensus 24 ~~~~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~ 103 (473)
T 4e3q_A 24 PQSWEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYH 103 (473)
T ss_dssp CCSHHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCC
T ss_pred cccHHHHHhhhcCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccc
Confidence 445667788888887764 4899999999999999999999999999999999999999999999999976542
Q ss_pred C--CCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc
Q 013008 135 N--MYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL 210 (451)
Q Consensus 135 ~--~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~ 210 (451)
. ...+++..+|+++|++..+ .++|+|++||+|||+.|+|+||.|+..++.+ ++.+||.++++|||.+.+++++
T Consensus 104 ~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~---~r~~ii~~~~~yHG~t~~a~s~ 180 (473)
T 4e3q_A 104 AFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKP---QKRKILTRWNAYHGVTAVSASM 180 (473)
T ss_dssp CCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHH
T ss_pred ccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CcceEEEeeceECCCccccccc
Confidence 2 2356778999999999986 7799999999999999999999998776654 5889999999999999999998
Q ss_pred cCCCCcCCCCcCCCCCeeEeeCCC------------------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHH
Q 013008 211 TSKEHYRSPFEPVMPGVNFVEYGN------------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFL 269 (451)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l 269 (451)
++.+. +..+.+..+++..++.++ .+++++.+. ++++|+||+||+++++|+++|+++||
T Consensus 181 tg~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl 259 (473)
T 4e3q_A 181 TGKPY-NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYF 259 (473)
T ss_dssp SCCGG-GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHH
T ss_pred ccccc-ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHH
Confidence 87543 334445556666555432 345555554 45799999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhcc-------CCCc
Q 013008 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN-------YGDH 341 (451)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~-------~~~~ 341 (451)
++|+++|++||++||+|||+|||||+|++|+++++|+.||++|++|+++|| +|+|++++++++++.+. ...|
T Consensus 260 ~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~h 339 (473)
T 4e3q_A 260 QAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPH 339 (473)
T ss_dssp HHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhcccccccccccc
Confidence 999999999999999999999999999999999999999999999999998 99999999999998763 3468
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcChHHHHH-------------HHhCCCCcceecccceeEEEEec-------------CC
Q 013008 342 GSTFAGSPLVCNAAIAVLDKISNPAFLAS-------------KLARNPHVKDVRGLGLIIGIEFD-------------VS 395 (451)
Q Consensus 342 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------------~~~~~~~~~~v~g~G~~~~~~~~-------------~~ 395 (451)
++||++||++|+|++++|+++++++++++ -+..+|.+.++||.|+|+++++. ..
T Consensus 340 g~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~ 419 (473)
T 4e3q_A 340 GFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSV 419 (473)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCH
T ss_pred CCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHH
Confidence 99999999999999999999988877766 12345788999999999999982 11
Q ss_pred hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 396 ~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
...+.+.|+++|+++.+.+ +.+||.||+++|++|+|+++++|+++++++.+
T Consensus 420 ~~~~~~~~~~~Gll~~~~g--~~i~l~PPL~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 420 SERIANTCTDLGLICRPLG--QSVVLCPPFILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp HHHHHHHHHHTTEECEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEEecC--CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999875 78999999999999999999999999988753
No 4
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=2.2e-63 Score=510.02 Aligned_cols=379 Identities=25% Similarity=0.453 Sum_probs=328.8
Q ss_pred HHHHHHHhcccccCC-------CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-
Q 013008 64 EVMEAEKKLLVGTYN-------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN- 135 (451)
Q Consensus 64 ~~~~~~~~~~~~~~~-------~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~- 135 (451)
++.+.+.++.+++|. ..|+++++|+|+++||.||++||||++|+++++|||+||+|++|+.++++++.+++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~ 92 (476)
T 3i5t_A 13 AVGAAMRDHILLPAQEMAKLGKSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW 92 (476)
T ss_dssp CHHHHHHHHBCCTTEEGGGTTTCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT
T ss_pred HHHhhcccccccCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC
Confidence 345555666666543 258999999999999999999999999999999999999999999999998766544
Q ss_pred CCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008 136 MYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (451)
Q Consensus 136 ~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (451)
.+.++...+|+++|+++++ .++|+|++||+||++.|+++++.++..++.. ++++||+++++|||++..++++++.
T Consensus 93 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~---~~~~vi~~~~~yHg~~~~~~~~~~~ 169 (476)
T 3i5t_A 93 YMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRP---QKKRIIVRYDGYHGSTALTAACTGR 169 (476)
T ss_dssp TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHTCCC
T ss_pred ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEcCCcCcCChhhccccCC
Confidence 5677889999999999985 7899999999999999999999885444332 5889999999999999999999888
Q ss_pred CCcCCCCcCCCCCeeEeeCCC----------------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHH
Q 013008 214 EHYRSPFEPVMPGVNFVEYGN----------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274 (451)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d----------------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~ 274 (451)
+.++..+.+..+++.+++++. +++|+++++ ++++++||+||+++++|.++++++||++|++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~ 249 (476)
T 3i5t_A 170 TGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKA 249 (476)
T ss_dssp GGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred hhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence 877777777778887766332 789999886 2579999999999999999999999999999
Q ss_pred HHHHhCCEEEEeccccCCCccccccccc-ccCCCcceeeecccccCC-cccccccccHHHHhhccCC-------CccCCC
Q 013008 275 ACDDAGALLVFDEVQCGLGRTGYLWAHE-HYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-------DHGSTF 345 (451)
Q Consensus 275 l~~~~g~llI~DEv~tg~gr~G~~~~~~-~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-------~~~~t~ 345 (451)
+|++||++||+||||+||||+|.+++++ ++++.||++||||++++| +|+|++++++++++.+... .+++||
T Consensus 250 lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~ 329 (476)
T 3i5t_A 250 ICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTY 329 (476)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTT
T ss_pred HHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCC
Confidence 9999999999999999999999988888 999999999999999999 9999999999999998753 677899
Q ss_pred CCcHHHHHHHHHHHHHhcChHHHHH-----------HH--hCCCCcceecccceeEEEEecCC-------------hHHH
Q 013008 346 AGSPLVCNAAIAVLDKISNPAFLAS-----------KL--ARNPHVKDVRGLGLIIGIEFDVS-------------ATPV 399 (451)
Q Consensus 346 ~~~~~~~aaa~aal~~~~~~~~~~~-----------~~--~~~~~~~~v~g~G~~~~~~~~~~-------------~~~~ 399 (451)
++||++|+|++++|+.++++++.++ +. .++|.+..+++.|+|+++++... ...+
T Consensus 330 ~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~ 409 (476)
T 3i5t_A 330 SNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKI 409 (476)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHH
Confidence 9999999999999998865555544 22 24567788999999999998422 5578
Q ss_pred HHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 400 VDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 400 ~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
++.|+++||++.|.+ +++||+||+++|+++|++++++|+++++++.
T Consensus 410 ~~~l~~~Gv~v~~~g--~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~ 455 (476)
T 3i5t_A 410 DERCFELGLIVRPLG--DLCVISPPLIISRAQIDEMVAIMRQAITEVS 455 (476)
T ss_dssp HHHHHHTTEECEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEecC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999975 7899999999999999999999999998765
No 5
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=6.9e-63 Score=505.62 Aligned_cols=381 Identities=27% Similarity=0.472 Sum_probs=326.3
Q ss_pred chHHHHHHHHhcccccCCC-------CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc
Q 013008 61 NNKEVMEAEKKLLVGTYNR-------APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV 133 (451)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~-------~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~ 133 (451)
+.+++.+.+.++.+++|.. .|+++++++|+++||.||++||||++|+++++|||+||+|++|+.++++++.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~ 90 (472)
T 3hmu_A 11 PTAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYY 90 (472)
T ss_dssp CHHHHHHHHHHHEECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCC
T ss_pred CHHHHHHHHHhhccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccc
Confidence 4566677777788877653 689999999999999999999999999999999999999999999999986532
Q ss_pred --cCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh
Q 013008 134 --SNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA 209 (451)
Q Consensus 134 --~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~ 209 (451)
...+.++...+|+++|+++++ .++|+|++||+||++.|+++++.++..++.+ ++++||+++++|||++..+++
T Consensus 91 ~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~---~~~~ii~~~~~yHg~t~~~~~ 167 (472)
T 3hmu_A 91 NTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQP---EKTVIISRKNAYHGSTVASSA 167 (472)
T ss_dssp CSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEcCcCCCccHHhhh
Confidence 234567789999999999985 7899999999999999999999988655543 588999999999999999999
Q ss_pred ccCCCCcCCCCcCCCCCeeEeeCC------C-----------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHH
Q 013008 210 LTSKEHYRSPFEPVMPGVNFVEYG------N-----------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFL 269 (451)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~------d-----------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l 269 (451)
+++.+.++..+. ..+++..++.+ | +++|+++++ ++++++||+||+++++|.++++++||
T Consensus 168 ~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l 246 (472)
T 3hmu_A 168 LGGMAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYW 246 (472)
T ss_dssp HSCCHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHH
T ss_pred ccCChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHH
Confidence 888766555555 55677666532 2 788998886 35799999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCC--CccCCCC
Q 013008 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG--DHGSTFA 346 (451)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~--~~~~t~~ 346 (451)
++|+++|++||++||+||||+||||+|++++++++++.||++||||++++| +|+|++++++++++.+... .+++||+
T Consensus 247 ~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~ 326 (472)
T 3hmu_A 247 PEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYS 326 (472)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTT
T ss_pred HHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCC
Confidence 999999999999999999999999999988899999999999999999987 8999999999999998433 6788999
Q ss_pred CcHHHHHHHHHHHHHhcChHHHHH------------H--HhCCCCcceecccceeEEEEecCC--------------hHH
Q 013008 347 GSPLVCNAAIAVLDKISNPAFLAS------------K--LARNPHVKDVRGLGLIIGIEFDVS--------------ATP 398 (451)
Q Consensus 347 ~~~~~~aaa~aal~~~~~~~~~~~------------~--~~~~~~~~~v~g~G~~~~~~~~~~--------------~~~ 398 (451)
+||++|+|++++|+.++++++.++ + +.++|.+..+++.|+|+++++..+ ...
T Consensus 327 ~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~ 406 (472)
T 3hmu_A 327 GHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYI 406 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHH
Confidence 999999999999998754433222 1 123567788999999999998421 557
Q ss_pred HHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 399 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 399 ~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
+++.|+++||++.+++ +++||+|++++|+|++++++++|+++++++.
T Consensus 407 ~~~~l~~~Gv~v~~~g--~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 407 CRERCFANNLIMRHVG--DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp HHHHHHHTTBCCEEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcEEEecC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999986 7899999999999999999999999987754
No 6
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=6.6e-62 Score=496.39 Aligned_cols=379 Identities=34% Similarity=0.532 Sum_probs=329.7
Q ss_pred chHHHHHHHHhcccccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC
Q 013008 61 NNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY 138 (451)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~ 138 (451)
.++++.++..++...++. +.|+++++|+|++|||.||++||||.+++++++|||+||+|++|+.++++++.+.. ..++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~ 105 (453)
T 4ffc_A 26 RSGALAERRRAAVSAGVGSTAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTP 105 (453)
T ss_dssp HHHHHHHHHHHHBCTTTCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSC
T ss_pred CHHHHHHHHHHhcCCCcCCCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccCcCC
Confidence 455666666666666554 67999999999999999999999999999999999999999999999999876543 3467
Q ss_pred CHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC-
Q 013008 139 SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE- 214 (451)
Q Consensus 139 ~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~- 214 (451)
++...+|+++|++.++ .++|+|++||+||++.|+++++.++ ++++||+++++|||++..++++++..
T Consensus 106 ~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~---------g~~~ii~~~~~yhg~~~~~~~~~~~~~ 176 (453)
T 4ffc_A 106 YEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLAT---------GRPAVVAFDNAYHGRTNLTMALTAKSM 176 (453)
T ss_dssp CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred CHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhc---------CCCEEEEEcCccCCcchHHHhhcCCCc
Confidence 7789999999999986 5799999999999999999999876 47899999999999999999988764
Q ss_pred CcCCCCcCCCCCeeEeeCC----C-------------HHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHH
Q 013008 215 HYRSPFEPVMPGVNFVEYG----N-------------IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD 277 (451)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~----d-------------~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~ 277 (451)
.++..+.+..+++..++++ | ++.|++.+.++++++||+||+++++|.++++++||++|+++|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~ 256 (453)
T 4ffc_A 177 PYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWAS 256 (453)
T ss_dssp TTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred ccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 5666777777788777765 4 4667777766689999999999999999999999999999999
Q ss_pred HhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHH
Q 013008 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIA 357 (451)
Q Consensus 278 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~a 357 (451)
+||++||+||||+||||+|.+++++++++.||++||||++++|+|+|++++++++++.+.+..+.+||++||++|+|+++
T Consensus 257 ~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~a 336 (453)
T 4ffc_A 257 ENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVA 336 (453)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHH
T ss_pred HcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999877889999999999999999
Q ss_pred HHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC---------ChHHHHHHHHHCCceeeecC
Q 013008 358 VLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV---------SATPVVDACRDSGLLVLTAG 414 (451)
Q Consensus 358 al~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~---------~~~~~~~~l~~~Gv~~~~~~ 414 (451)
+|+.++++++.++ ++++++.+..+++.|+++++++.. ...++.+.|+++||++.|++
T Consensus 337 al~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~ 416 (453)
T 4ffc_A 337 ALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCG 416 (453)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEEC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCC
Confidence 9998755554443 334567778889999999998832 25678899999999999876
Q ss_pred C-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 415 K-GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 415 ~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
. ++.+||+|++++|+|++++++++|+++++++..
T Consensus 417 ~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (453)
T 4ffc_A 417 TFGNVIRLLPPLVIGDDLLDEGITALSDIIRAKAS 451 (453)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4 578999999999999999999999999988653
No 7
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=1.3e-61 Score=494.46 Aligned_cols=385 Identities=31% Similarity=0.471 Sum_probs=326.4
Q ss_pred chHHHHHHHHhcccccCCCC------ceEEEeecccEEEec-CCC--EEEeeccCcccccCCCCCHHHHHHHHHHHhhcc
Q 013008 61 NNKEVMEAEKKLLVGTYNRA------PVVLASGKGCKLYDA-EGR--EYLDLSSGIAVNALGHGDADWIKAVVDQANVLT 131 (451)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~------p~~~~~~~G~~l~d~-~G~--~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 131 (451)
..+++++.+.++.+++|.+. |+++++++|+++||. ||+ +||||++++++++|||+||+|++|+.++++++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~ 108 (457)
T 3tfu_A 29 TPEQIIAVDGAHLWHPYSSIGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN 108 (457)
T ss_dssp CHHHHHHHHHHHBCCTTCCSSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHhhcCcccccccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhcc
Confidence 45677888889999998875 999999999999999 999 999999999999999999999999999999876
Q ss_pred ccc-CCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhh
Q 013008 132 HVS-NMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL 208 (451)
Q Consensus 132 ~~~-~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~ 208 (451)
+.+ ..++++...+|+++|++.++ .++|+|++||+||++.|+++++.++..++.+ ++++||+++++|||++..++
T Consensus 109 ~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~---g~~~ii~~~~~yhg~~~~~~ 185 (457)
T 3tfu_A 109 HVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLP---GKRRLMTWRGGYHGDTFLAM 185 (457)
T ss_dssp CCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHH
T ss_pred CccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC---CCceEEEEcCCcCCccHHhh
Confidence 654 44567889999999999985 7899999999999999999999886544322 47799999999999999998
Q ss_pred hccC-CCCcCCCCcCCCCCeeEeeC-------CCHHHHHHhcC--CCCeEEEEEcc-ccCCCCccccCHHHHHHHHHHHH
Q 013008 209 ALTS-KEHYRSPFEPVMPGVNFVEY-------GNIEATRKLIQ--PGKTAAVFVEP-IQGEGGIYSATKEFLQFLRDACD 277 (451)
Q Consensus 209 ~~~~-~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~--~~~~aavi~ep-~~~~~G~~~~~~~~l~~l~~l~~ 277 (451)
++++ ...+...+.+..+++.+++. +|+++|+++++ .+++++|++|| +++++|.++++++||++|+++|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~ 265 (457)
T 3tfu_A 186 SICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICR 265 (457)
T ss_dssp TTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHH
T ss_pred cccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHH
Confidence 8853 44455556666677776665 58999999997 35799999999 99999999999999999999999
Q ss_pred HhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhcc---CC--CccCCCCCcHHH
Q 013008 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN---YG--DHGSTFAGSPLV 351 (451)
Q Consensus 278 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~---~~--~~~~t~~~~~~~ 351 (451)
+||++||+||||+||||+|.+++++++++.||++||||+++|| +|+|++++++++++.+. .. .+++||++||++
T Consensus 266 ~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a 345 (457)
T 3tfu_A 266 RYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLA 345 (457)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHH
T ss_pred HcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHH
Confidence 9999999999999999999988999999999999999999998 69999999999999884 33 678999999999
Q ss_pred HHHHHHHHHHhcChHHHHH----------HH---hCCCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCCC
Q 013008 352 CNAAIAVLDKISNPAFLAS----------KL---ARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKG 416 (451)
Q Consensus 352 ~aaa~aal~~~~~~~~~~~----------~~---~~~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~~ 416 (451)
|+|++++|+.++++++.++ .+ .+++.+..+++.|+++++++.. +..++++.|+++||++.|.+
T Consensus 346 ~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~~-- 423 (457)
T 3tfu_A 346 CAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPFR-- 423 (457)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEESSCCCHHHHHHHHHHTTEECCCBT--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEECCcccHHHHHHHHHHCCeEEEecC--
Confidence 9999999998876655544 11 2356677889999999999843 46889999999999999864
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 013008 417 NVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS 450 (451)
Q Consensus 417 ~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~~ 450 (451)
+.+||+|++++|+|++++++++|+++++++..+|
T Consensus 424 ~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~~~p 457 (457)
T 3tfu_A 424 NLVYAMPPYICTPAEITQITSAMVEVARLVGSLP 457 (457)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHhccCC
Confidence 7899999999999999999999999998876543
No 8
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=2.5e-61 Score=491.94 Aligned_cols=376 Identities=31% Similarity=0.520 Sum_probs=325.2
Q ss_pred chHHHHHHHHhcccccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCC
Q 013008 61 NNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYY 138 (451)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~ 138 (451)
.++++.++..++...++. +.|+++++|+|++|||.||++||||.+++++++|||+||+|++|+.++++++.+.+ ..+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~ 102 (451)
T 3oks_A 23 RSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTP 102 (451)
T ss_dssp HHHHHHHHHHHHBCTTBCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSC
T ss_pred cHHHHHHHHHhhccCCcCCCCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccC
Confidence 456666666666666654 67999999999999999999999999999999999999999999999998876543 3467
Q ss_pred CHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC-
Q 013008 139 SIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE- 214 (451)
Q Consensus 139 ~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~- 214 (451)
++...+|+++|++.++ .++|+|++||+||++.|+++++.++ ++++||+++++|||++..++++++..
T Consensus 103 ~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~---------g~~~ii~~~~~yhG~~~~~~~~~~~~~ 173 (451)
T 3oks_A 103 YEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHT---------HKPAVVAFDHAYHGRTNLTMALTAKVM 173 (451)
T ss_dssp CHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred CHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhc---------CCCeEEEEcCCcCCccHHHHHhcCCCc
Confidence 7788999999999985 5799999999999999999999876 47899999999999999999988764
Q ss_pred CcCCCCcCCCCCeeEeeCC------------------CHHHHHHhc----CCCCeEEEEEccccCCCCccccCHHHHHHH
Q 013008 215 HYRSPFEPVMPGVNFVEYG------------------NIEATRKLI----QPGKTAAVFVEPIQGEGGIYSATKEFLQFL 272 (451)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~------------------d~~~le~~l----~~~~~aavi~ep~~~~~G~~~~~~~~l~~l 272 (451)
.++..+.+..+++..++++ +++.+++.+ .++++++|++||+++++|.++++++||++|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l 253 (451)
T 3oks_A 174 PYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTL 253 (451)
T ss_dssp TTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred ccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHH
Confidence 5666777777888888776 233343443 346799999999999999999999999999
Q ss_pred HHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHH
Q 013008 273 RDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVC 352 (451)
Q Consensus 273 ~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~ 352 (451)
+++|++||++||+||||+||||+|.+++++++++.||++||||++++|+|+|++++++++++.+.+..+.+||++||++|
T Consensus 254 ~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~ 333 (451)
T 3oks_A 254 LDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIAC 333 (451)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHH
T ss_pred HHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999998778899999999999
Q ss_pred HHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC---------ChHHHHHHHHHCCce
Q 013008 353 NAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV---------SATPVVDACRDSGLL 409 (451)
Q Consensus 353 aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~---------~~~~~~~~l~~~Gv~ 409 (451)
+|++++|+.++++++.++ ++++++.+..+++.|+++++++.. ...++.+.|+++||+
T Consensus 334 aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 413 (451)
T 3oks_A 334 AAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVI 413 (451)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcE
Confidence 999999998765555443 334567778899999999999832 246788999999999
Q ss_pred eeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 410 VLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 410 ~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
+.|++. ++.+||+|++++|++++++++++|++++++
T Consensus 414 v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 414 VLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp CEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 998764 578999999999999999999999998864
No 9
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=3.3e-61 Score=492.37 Aligned_cols=381 Identities=25% Similarity=0.411 Sum_probs=326.4
Q ss_pred HHHHHHhcccccCC---------CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc--
Q 013008 65 VMEAEKKLLVGTYN---------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-- 133 (451)
Q Consensus 65 ~~~~~~~~~~~~~~---------~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-- 133 (451)
+.+.+.++.+++|. ++|+++++|+|+++||.||++||||.+++++++|||+||+|++|+.+++++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~ 88 (460)
T 3gju_A 9 LNAWDRDHFFHPSTHMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHA 88 (460)
T ss_dssp HHHHHHHHCCCTTSCHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHhhhcccccCccccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccccc
Confidence 44455556666553 3469999999999999999999999999999999999999999999999886532
Q ss_pred cCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008 134 SNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (451)
Q Consensus 134 ~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (451)
...+.++...+|+++|+++++ .++|+|++||+||++.|+++++.++..++.+ ++++||+++++|||++..+++++
T Consensus 89 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~ 165 (460)
T 3gju_A 89 YVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRP---EKKKIISRWRGYHGSGVMTGSLT 165 (460)
T ss_dssp CTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHHC
T ss_pred ccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCCCHHHhhcc
Confidence 234567779999999999874 7899999999999999999999887655433 58999999999999999999988
Q ss_pred CCCCcCCCCcCCCCCeeEeeC------CC------------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHH
Q 013008 212 SKEHYRSPFEPVMPGVNFVEY------GN------------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (451)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~------~d------------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~ 270 (451)
+...++..+.+..+++..++. +| +++|+++++ ++++++|++||+++++|.++++++||+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~ 245 (460)
T 3gju_A 166 GLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWE 245 (460)
T ss_dssp CCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred CCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHH
Confidence 877777777777777776652 33 689999886 257999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhcc-------CCCcc
Q 013008 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN-------YGDHG 342 (451)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~-------~~~~~ 342 (451)
+|+++|++||++||+||||+||||+|++++.+++++.||++||||++++| +|+|++++++++++.+. ...+.
T Consensus 246 ~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~ 325 (460)
T 3gju_A 246 KIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHG 325 (460)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCC
T ss_pred HHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccC
Confidence 99999999999999999999999999988889999999999999999988 89999999999999883 34678
Q ss_pred CCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC-------------
Q 013008 343 STFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS------------- 395 (451)
Q Consensus 343 ~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~------------- 395 (451)
+||++||++|+|++++|+.++++++.++ .+++++.+..+++.|+++++++...
T Consensus 326 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (460)
T 3gju_A 326 WTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKI 405 (460)
T ss_dssp CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHH
Confidence 9999999999999999998755554443 2345677888999999999988311
Q ss_pred hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 396 ~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
..++++.|+++||++.|.+.++++||+|++++|+|++++++++|+++++++..
T Consensus 406 ~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 406 GPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp HHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999999764478999999999999999999999999988753
No 10
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=1.5e-60 Score=487.33 Aligned_cols=363 Identities=28% Similarity=0.483 Sum_probs=312.7
Q ss_pred CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCCCCHHHHHHHHHHhhccC--C
Q 013008 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMYYSIPQIELAKRLVACSF--A 155 (451)
Q Consensus 80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~--~ 155 (451)
.|+++++|+|+++||.||++||||++++++++|||+||+|++|+.++++++.+. ...+.++...+|+++|+++++ .
T Consensus 32 ~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 111 (459)
T 4a6r_A 32 GARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGF 111 (459)
T ss_dssp --CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTC
T ss_pred CCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 589999999999999999999999999999999999999999999999886522 234667889999999999985 7
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC--
Q 013008 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-- 233 (451)
Q Consensus 156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 233 (451)
++|+|++||+||++.|+++++.++..++.+ ++++||+++++|||++..+.++++...++..+.+..+++..++.+
T Consensus 112 ~~v~~~~ggseA~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 188 (459)
T 4a6r_A 112 DRVFYTNSGSESVDTMIRMVRRYWDVQGKP---EKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWW 188 (459)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCH
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCcc
Confidence 899999999999999999999887655543 589999999999999999999988777776677777777766633
Q ss_pred -------C--------HHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Q 013008 234 -------N--------IEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (451)
Q Consensus 234 -------d--------~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~ 295 (451)
| +++|+++++ ++++++|++||+++++|.++++++||++|+++|++||++||+||||+||||+
T Consensus 189 ~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~ 268 (459)
T 4a6r_A 189 YKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRT 268 (459)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc
Confidence 2 788999886 2578999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCcceeeecccccCC-cccccccccHHHHhhcc---CCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-
Q 013008 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAIN---YGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS- 370 (451)
Q Consensus 296 G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~---~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~- 370 (451)
|.+++.+++++.||++||||++++| +|+|++++++++++.+. ...+++||++||++|+|++++|+.++++++.++
T Consensus 269 G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 348 (459)
T 4a6r_A 269 GEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRV 348 (459)
T ss_dssp SSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHH
Confidence 9988889999999999999999987 89999999999999886 456778999999999999999997654332221
Q ss_pred -----------H---HhCCCCcceecccceeEEEEecCC-------------hHHHHHHHHHCCceeeecCCCCEEEEeC
Q 013008 371 -----------K---LARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVDACRDSGLLVLTAGKGNVVRLVP 423 (451)
Q Consensus 371 -----------~---~~~~~~~~~v~g~G~~~~~~~~~~-------------~~~~~~~l~~~Gv~~~~~~~~~~iri~~ 423 (451)
+ +..++.+..+++.|+++++++... ...+++.|+++||++.|++ +++||+|
T Consensus 349 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~iRi~~ 426 (459)
T 4a6r_A 349 KDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG--DHIVSAP 426 (459)
T ss_dssp HHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET--TEEEECC
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC--CEEEEEC
Confidence 2 245567788999999999988321 5678899999999999976 7899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 424 PLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 424 ~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
++++|+|++++++++|+++++++.
T Consensus 427 ~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 427 PLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 11
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=4.7e-60 Score=482.26 Aligned_cols=382 Identities=29% Similarity=0.492 Sum_probs=302.9
Q ss_pred HHHHHHHhcccccCC------CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc-cCC
Q 013008 64 EVMEAEKKLLVGTYN------RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNM 136 (451)
Q Consensus 64 ~~~~~~~~~~~~~~~------~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~ 136 (451)
++.+.+.++.++.+. ..|+++++|+|+++||.||++||||++++++.++||+||+|++|+.+++++..++ ...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~ 83 (448)
T 3dod_A 4 DLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLG 83 (448)
T ss_dssp HHHHHHHHHBCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSS
T ss_pred HHHHhhhhcccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccc
Confidence 345556666665543 3589999999999999999999999999999999999999999999999887553 234
Q ss_pred CCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008 137 YYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214 (451)
Q Consensus 137 ~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~ 214 (451)
+.++...+|+++|+++++ .++|+|++||+||++.|+++++.++...+.+ .+++||+++++|||++..++++++..
T Consensus 84 ~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~---~~~~vi~~~~~yhg~~~~~~~~~~~~ 160 (448)
T 3dod_A 84 MTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKP---EKQKFIAMKNGYHGDTIGAVSVGSIE 160 (448)
T ss_dssp SEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEEC-----------------
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCC---CCCEEEEECCCCCCccHHHHHhcCCc
Confidence 566778999999999984 6899999999999999999999873322211 37999999999999999998888777
Q ss_pred CcCCCCcCCCCCeeEeeCCC----------------HHHHHHhcC--CCCeEEEEEcccc-CCCCccccCHHHHHHHHHH
Q 013008 215 HYRSPFEPVMPGVNFVEYGN----------------IEATRKLIQ--PGKTAAVFVEPIQ-GEGGIYSATKEFLQFLRDA 275 (451)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~d----------------~~~le~~l~--~~~~aavi~ep~~-~~~G~~~~~~~~l~~l~~l 275 (451)
.++..+.|..+++..+++++ +++|+++++ ++++++|++||++ +++|.++++++||++|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l 240 (448)
T 3dod_A 161 LFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVREL 240 (448)
T ss_dssp ------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHH
T ss_pred cccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHH
Confidence 66666667667777777654 899999997 4579999999998 9999999999999999999
Q ss_pred HHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccC-------CCccCCCCC
Q 013008 276 CDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY-------GDHGSTFAG 347 (451)
Q Consensus 276 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~-------~~~~~t~~~ 347 (451)
|++||++||+||||+|||++|.+++++++++.||++||||++++| +|+|++++++++++.+.. ..+++||++
T Consensus 241 ~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 320 (448)
T 3dod_A 241 CTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTG 320 (448)
T ss_dssp HHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTT
T ss_pred HHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCc
Confidence 999999999999999999999988899999999999999999999 599999999999999876 567899999
Q ss_pred cHHHHHHHHHHHHHhcChHHHHH-----------HH--hCCCCcceecccceeEEEEecCC-------------hHHHHH
Q 013008 348 SPLVCNAAIAVLDKISNPAFLAS-----------KL--ARNPHVKDVRGLGLIIGIEFDVS-------------ATPVVD 401 (451)
Q Consensus 348 ~~~~~aaa~aal~~~~~~~~~~~-----------~~--~~~~~~~~v~g~G~~~~~~~~~~-------------~~~~~~ 401 (451)
||++|+|++++|+.++++++.++ +. ..+|.+..+++.|+++++++... +.++++
T Consensus 321 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (448)
T 3dod_A 321 NQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSL 400 (448)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHH
Confidence 99999999999998755554443 22 24566777889999999998421 367999
Q ss_pred HHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 013008 402 ACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS 450 (451)
Q Consensus 402 ~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~~ 450 (451)
.|+++||++.|++ +.+||+|++++|+|+|++++++|+++++++...+
T Consensus 401 ~l~~~Gv~~~~~~--~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~~ 447 (448)
T 3dod_A 401 KMRELGMLTRPLG--DVIAFLPPLASTAEELSEMVAIMKQAIHEVTSLE 447 (448)
T ss_dssp HHHHTTEECCEET--TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCcEEeccC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999874 7899999999999999999999999999887554
No 12
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=8e-61 Score=516.21 Aligned_cols=380 Identities=23% Similarity=0.352 Sum_probs=314.1
Q ss_pred HHHHHHhcccccCCC-------CceEEEeeccc--EEEecCCC----EEEeeccCcccccCCCC-CHHHHHHHHHHHhhc
Q 013008 65 VMEAEKKLLVGTYNR-------APVVLASGKGC--KLYDAEGR----EYLDLSSGIAVNALGHG-DADWIKAVVDQANVL 130 (451)
Q Consensus 65 ~~~~~~~~~~~~~~~-------~p~~~~~~~G~--~l~d~~G~----~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~ 130 (451)
+.+.+.++.+++|.. .|+++++|+|. ||||.||+ +|||++++++++++||+ ||+|++|+.+|++++
T Consensus 334 ~~~~~~~~~whp~t~~~~~~~~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l 413 (831)
T 4a0g_A 334 MAKLAGEVFWWPFTQHKLVHQETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARF 413 (831)
T ss_dssp HHHHHHHHBCCTTCCGGGCCGGGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCccCcccccCCCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhc
Confidence 334455677776642 37899999995 99999999 99999999999999999 999999999999998
Q ss_pred ccccC-CCCCHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHH-HHHhhhcCCCC-----CCCCceEEEEcCCc
Q 013008 131 THVSN-MYYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFA-RKFQRHSNPDS-----KEPATEFVSFTNSF 200 (451)
Q Consensus 131 ~~~~~-~~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a-~~~~~~~~~~~-----~~~~~~ii~~~~~y 200 (451)
.+..+ .+.+++..+|+++|++..+ .++|+|++||+|||+.|||++ +.|++.++... .++|.+||.++++|
T Consensus 414 ~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~sy 493 (831)
T 4a0g_A 414 GHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSY 493 (831)
T ss_dssp SSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCC
T ss_pred ccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCc
Confidence 77643 3567889999999999987 689999999999999999999 67876544210 01377999999999
Q ss_pred cCChhhhhhccCCCCcCC--------CCcCCC--------CCeeEee--------------CCC----------------
Q 013008 201 HGRTMGALALTSKEHYRS--------PFEPVM--------PGVNFVE--------------YGN---------------- 234 (451)
Q Consensus 201 hg~~~~~~~~~~~~~~~~--------~~~~~~--------~~~~~~~--------------~~d---------------- 234 (451)
||.+.+++++++...++. ++.+.. +++..++ ++|
T Consensus 494 HG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (831)
T 4a0g_A 494 HGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLAR 573 (831)
T ss_dssp CCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHH
T ss_pred ccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhH
Confidence 999999999987654432 111100 1222222 233
Q ss_pred --HHHHHHhcC-------CCCeEEEEEccc-cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccccc
Q 013008 235 --IEATRKLIQ-------PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY 304 (451)
Q Consensus 235 --~~~le~~l~-------~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~ 304 (451)
+++|++.|+ .+++++||+||+ ++++|+++++++||++|+++|++||++||+|||++||||+|++|+++++
T Consensus 574 ~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~ 653 (831)
T 4a0g_A 574 IYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653 (831)
T ss_dssp HHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhc
Confidence 267888875 357999999997 9999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeecccccCC-cccccccccHHHHhhccCC------CccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------
Q 013008 305 GIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG------DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS------- 370 (451)
Q Consensus 305 ~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~------- 370 (451)
|+.||++||||+|+|| +|+|++++++++++.+... .|++||++||++|+|++++|++++++++.++
T Consensus 654 gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~ 733 (831)
T 4a0g_A 654 GCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKT 733 (831)
T ss_dssp SSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSB
T ss_pred CCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999 7999999999999998653 3889999999999999999999866543322
Q ss_pred -----------HHhCCCCcceecccceeEEEEecC----------ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCH
Q 013008 371 -----------KLARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISE 429 (451)
Q Consensus 371 -----------~~~~~~~~~~v~g~G~~~~~~~~~----------~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~ 429 (451)
.++++|.+..+++.|+|+++++.. .+.++.+.|+++||++.|.+ +.+||+||+.+|+
T Consensus 734 l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~g--~~lrl~pp~~~t~ 811 (831)
T 4a0g_A 734 LRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPLG--NVIYLMCGPCTSP 811 (831)
T ss_dssp BCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCBT--TEEEEECCTTCCH
T ss_pred HHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEecC--CEEEEECCCCCCH
Confidence 234578888999999999999832 14568889999999999875 7999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013008 430 QELDQAVEILCKTLPVL 446 (451)
Q Consensus 430 e~i~~~l~~l~~~l~~~ 446 (451)
++|++++++|+++++++
T Consensus 812 e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 812 EICRRLLTKLYKRLGEF 828 (831)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998765
No 13
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=3.2e-59 Score=474.00 Aligned_cols=384 Identities=34% Similarity=0.570 Sum_probs=310.5
Q ss_pred chHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 013008 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140 (451)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~ 140 (451)
.++++.+...++....|.+.|+++++++|+++||.||++||||.+|+++.+|||+||+|++|+.++++++.+.+..+.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~~~~ 107 (433)
T 1z7d_A 28 TPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 107 (433)
T ss_dssp CHHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEH
T ss_pred cHHHHHHHHHHhcccccCCCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCcCCH
Confidence 45567777777777778888999999999999999999999999999999999999999999999998865544445666
Q ss_pred HHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhh-cCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008 141 PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRH-SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (451)
Q Consensus 141 ~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~-~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (451)
...+|+++|+++++.++|+|++||+||++.|+++++.|+.. ++.. +++++||+++++|||++..++.+++.+.++..
T Consensus 108 ~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~--~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~ 185 (433)
T 1z7d_A 108 PLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIP--ENMAKIVVCKNNFSGRTLGCISASTTKKCTSN 185 (433)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCC--TTCCEEEEETTC--------------------
T ss_pred HHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCC--CCCCeEEEEeCCcCCcchhhhcccCCcccccc
Confidence 78999999999999999999999999999999999865321 1100 13589999999999999887777665444445
Q ss_pred CcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008 220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (451)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~ 299 (451)
+.|..+++..+|++|+++|+++++.+++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||++|.++
T Consensus 186 ~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~ 265 (433)
T 1z7d_A 186 FGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL 265 (433)
T ss_dssp ------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred CCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcch
Confidence 55666788889999999999999645799999999999999888999999999999999999999999999999999988
Q ss_pred cccccCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------
Q 013008 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------- 370 (451)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------- 370 (451)
+++++++.||++||||++++| +|+|++++++++++.+.+..+.+||++||++++++.++|+.++++++.++
T Consensus 266 ~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l 345 (433)
T 1z7d_A 266 CVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPF 345 (433)
T ss_dssp GGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888899999999999999999 99999999999999988767889999999999999999998765444433
Q ss_pred ---H---HhCCCCcceecccceeEEEEecC---ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008 371 ---K---LARNPHVKDVRGLGLIIGIEFDV---SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 441 (451)
Q Consensus 371 ---~---~~~~~~~~~v~g~G~~~~~~~~~---~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~ 441 (451)
+ .+++|.+..+++.|+++++++.. ...++++.|+++||++.|++. +.+|++|++.+|+|++++++++|++
T Consensus 346 ~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~ 424 (433)
T 1z7d_A 346 LENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHD-KTIRLTPPLCITKEQLDECTEIIVK 424 (433)
T ss_dssp HHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETT-TEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecCCC-CEEEEECCcCCCHHHHHHHHHHHHH
Confidence 2 12556666788999999999853 367899999999999998754 7899999999999999999999999
Q ss_pred HHHHHh
Q 013008 442 TLPVLD 447 (451)
Q Consensus 442 ~l~~~~ 447 (451)
+++++.
T Consensus 425 ~l~~~~ 430 (433)
T 1z7d_A 425 TVKFFD 430 (433)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998764
No 14
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=2.7e-59 Score=477.23 Aligned_cols=380 Identities=32% Similarity=0.557 Sum_probs=323.2
Q ss_pred hHHHHHHHHhcccc---cCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCC
Q 013008 62 NKEVMEAEKKLLVG---TYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY 137 (451)
Q Consensus 62 ~~~~~~~~~~~~~~---~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~ 137 (451)
.+++.+.+.++.++ .|. +.|+++++|+|+++||.||++||||++++++++|||+||+|++|+.++++++.+....+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~ 88 (452)
T 3n5m_A 9 TDELLAKDEQYVWHGMRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQ 88 (452)
T ss_dssp HHHHHHHHHHHBCCTTSCSCGGGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTTS
T ss_pred HHHHHHHhhhhccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCccccc
Confidence 45566677777777 443 46999999999999999999999999999999999999999999999998876533446
Q ss_pred CCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCc
Q 013008 138 YSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY 216 (451)
Q Consensus 138 ~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~ 216 (451)
.++...+|+++|++.++ ...|+|++||+||++.|+++++.++...+.+ ++++||+++++|||++..++++++...+
T Consensus 89 ~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 165 (452)
T 3n5m_A 89 SHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEP---HRYKFMSRYRGYHGNTMATMAATGQAQR 165 (452)
T ss_dssp EEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCT---TCCEEEEETTCCCCSSHHHHHSCCCGGG
T ss_pred CCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCCCHHHHhcCCchhh
Confidence 67779999999999986 2239999999999999999999874332221 4789999999999999999998887776
Q ss_pred CCCCcCCCCCeeEeeC--------CC---------HHHHHHhcC---CCCeEEEEEccc-cCCCCccccCHHHHHHHHHH
Q 013008 217 RSPFEPVMPGVNFVEY--------GN---------IEATRKLIQ---PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDA 275 (451)
Q Consensus 217 ~~~~~~~~~~~~~~~~--------~d---------~~~le~~l~---~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l 275 (451)
+..+.+..+++.+++. +| +++|+++++ ++++++|++||+ ++ +|.++|+++||++|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l 244 (452)
T 3n5m_A 166 RYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHET 244 (452)
T ss_dssp TTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHH
T ss_pred ccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHH
Confidence 6667776677666553 55 899999986 457999999999 88 99889999999999999
Q ss_pred HHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccC------CCccCCCCCc
Q 013008 276 CDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINY------GDHGSTFAGS 348 (451)
Q Consensus 276 ~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~------~~~~~t~~~~ 348 (451)
|++||++||+||||+||||+|.+++++++++.||++||||++++| +|+|++++++++++.+.. ..+++|+++|
T Consensus 245 ~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~ 324 (452)
T 3n5m_A 245 CQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGN 324 (452)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTC
T ss_pred HHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCC
Confidence 999999999999999999999988899999999999999999999 999999999999999843 2467899999
Q ss_pred HHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec--CC---------hHHHHHHH
Q 013008 349 PLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD--VS---------ATPVVDAC 403 (451)
Q Consensus 349 ~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~--~~---------~~~~~~~l 403 (451)
|++|+|++++|+.++++++.++ +++++|.+..+++.|+++++++. .. ..++++.|
T Consensus 325 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 404 (452)
T 3n5m_A 325 PAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNAC 404 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHH
Confidence 9999999999998765554443 33566777889999999999882 11 24688999
Q ss_pred HHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 404 RDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 404 ~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
+++||++.|++. ++++||+|++++|+|+|++++++|++++++
T Consensus 405 ~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 405 KEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp HHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999998762 478999999999999999999999998864
No 15
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=7.1e-59 Score=472.17 Aligned_cols=382 Identities=34% Similarity=0.538 Sum_probs=327.1
Q ss_pred chHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH
Q 013008 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI 140 (451)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~ 140 (451)
..+++.+...++..+.|.+.|+++++++|+++||.||++||||.+|+++.+|||+||+|++|+.++++++.+.+..+.++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~~~~ 118 (439)
T 2oat_A 39 TSDDIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 118 (439)
T ss_dssp CHHHHHHHHHHHBCCCCCCCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEES
T ss_pred CHHHHHHHHHHhcccccCCCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCccCCH
Confidence 45667777777788888888999999999999999999999999999999999999999999999998865543334455
Q ss_pred HHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhc-CCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008 141 PQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHS-NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (451)
Q Consensus 141 ~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~-~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (451)
...+++++|+++++.++++|++||+||++.|+++++.|+... +.. +++++||+++++|||++..++.+++.+.++..
T Consensus 119 ~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~--~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~ 196 (439)
T 2oat_A 119 VLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQ--KYKAKIVFAAGNFWGRTLSAISSSTDPTSYDG 196 (439)
T ss_dssp SHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCC--TTCCEEEEETTCCCCSSHHHHTTCCCHHHHTT
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCC--CCCCeEEEEcCCCCCCCHhHhhcCCChhcccC
Confidence 688999999999999999999999999999999998764211 100 13489999999999999888777765444455
Q ss_pred CcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008 220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (451)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~ 299 (451)
+.|..+++..+|++|+++|+++++.+++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||++|.++
T Consensus 197 ~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~ 276 (439)
T 2oat_A 197 FGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL 276 (439)
T ss_dssp SCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred CCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcch
Confidence 66777888889999999999999645799999999999999889999999999999999999999999999999999988
Q ss_pred cccccCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------
Q 013008 300 AHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------- 370 (451)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------- 370 (451)
+++++++.||++||||++++| +|+|++++++++++.+....+.+||++||++++++.++|+.++++++.++
T Consensus 277 ~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l 356 (439)
T 2oat_A 277 AVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIIL 356 (439)
T ss_dssp GGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 888999999999999999999 99999999999999988777889999999999999999998765544444
Q ss_pred --HHhC--CCCcceecccceeEEEEecC----ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008 371 --KLAR--NPHVKDVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 442 (451)
Q Consensus 371 --~~~~--~~~~~~v~g~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~ 442 (451)
.++. ++.+..+++.|+++++++.. ...++++.|+++||++.|.+. +.+|++|++.+|+|++++++++|+++
T Consensus 357 ~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~ 435 (439)
T 2oat_A 357 RNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHG-DIIRFAPPLVIKEDELRESIEIINKT 435 (439)
T ss_dssp HHHHTTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBSSS-SEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecCCC-CEEEEECccCCCHHHHHHHHHHHHHH
Confidence 1222 34444578899999999843 367899999999999998755 88999999999999999999999998
Q ss_pred HHH
Q 013008 443 LPV 445 (451)
Q Consensus 443 l~~ 445 (451)
+++
T Consensus 436 l~~ 438 (439)
T 2oat_A 436 ILS 438 (439)
T ss_dssp HHT
T ss_pred HHh
Confidence 864
No 16
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=1.8e-58 Score=468.63 Aligned_cols=385 Identities=23% Similarity=0.346 Sum_probs=322.3
Q ss_pred hhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCC-CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCH
Q 013008 39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYN-RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDA 117 (451)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p 117 (451)
.+.|.++ ++++.+++|+|++++.+.+. .+. +.|+++++++|+++||.||++||||.+++++++|||+||
T Consensus 5 ~~~s~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p 74 (434)
T 3l44_A 5 FTKSEAL-HKEALEHIVGGVNSPSRSFK---------AVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHP 74 (434)
T ss_dssp CHHHHHH-HHHHHHHBGGGCSSGGGSSG---------GGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCH
T ss_pred ChhHHHH-HHHHHhhCCCCcCccccccc---------cccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCH
Confidence 4467777 99999999999987766432 122 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q 013008 118 DWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSF 196 (451)
Q Consensus 118 ~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~ 196 (451)
+|++|+.+++++... ..++++...+|+++|++.+ +.++|+|++||+||++.|+++++.++ ++++||++
T Consensus 75 ~v~~a~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~---------~~~~vi~~ 143 (434)
T 3l44_A 75 HITKAITTAAENGVL--YGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYT---------GRTKIMKF 143 (434)
T ss_dssp HHHHHHHHHHHHCSC--CSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEE
T ss_pred HHHHHHHHHHHhCcC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhh---------CCCEEEEE
Confidence 999999999987532 3466778999999999998 48999999999999999999999876 47899999
Q ss_pred cCCccCChhhhhhccCCCCcCCCC--cC-----CCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHH
Q 013008 197 TNSFHGRTMGALALTSKEHYRSPF--EP-----VMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKE 267 (451)
Q Consensus 197 ~~~yhg~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~ 267 (451)
+++|||++..++..++........ .+ ..+++..+|++|+++|+++++ ++++++|++||+++++|.++++++
T Consensus 144 ~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~ 223 (434)
T 3l44_A 144 AGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPG 223 (434)
T ss_dssp TTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTT
T ss_pred cCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHH
Confidence 999999998887766543211110 01 112567889999999999997 357999999999999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC---CCccCC
Q 013008 268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---GDHGST 344 (451)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~~~~~t 344 (451)
|+++|+++|++||++||+||||+|| ++|.+++++++++.||++||||++++|+|+|++++++++++.+.. ..+.+|
T Consensus 224 ~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t 302 (434)
T 3l44_A 224 FLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGT 302 (434)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCT
T ss_pred HHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCC
Confidence 9999999999999999999999999 999888889999999999999999999999999999999998865 247789
Q ss_pred CCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC---------------C
Q 013008 345 FAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV---------------S 395 (451)
Q Consensus 345 ~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~---------------~ 395 (451)
|++||++++|++++|+.++++++.++ +...++.+..+++.|.++++++.. .
T Consensus 303 ~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (434)
T 3l44_A 303 MAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEM 382 (434)
T ss_dssp TTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHH
T ss_pred CCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHH
Confidence 99999999999999998876655544 222355566788999999998831 1
Q ss_pred hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 396 ~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
..++.+.|+++||++.+++. +.+|+ ++.+|+|++++++++|++++++++.
T Consensus 383 ~~~~~~~l~~~Gv~v~~~~~-~~~rl--~~~~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 383 FGKFFKLMLQEGVNLAPSKY-EAWFL--TTEHTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp HHHHHHHHHHTTEECCSSTT-CCEEC--CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeEEeecCC-CcEEE--ecccCHHHHHHHHHHHHHHHHHHHh
Confidence 25688899999999998865 55666 7899999999999999999988764
No 17
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=3.6e-58 Score=460.51 Aligned_cols=370 Identities=41% Similarity=0.752 Sum_probs=327.2
Q ss_pred HhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH
Q 013008 70 KKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRL 149 (451)
Q Consensus 70 ~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l 149 (451)
.++..+.|.+.|+++++++|+++||.||++||||.+++++++|||+||+|++|+.+++++..+.+..++.+...++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l 87 (395)
T 3nx3_A 8 QSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNL 87 (395)
T ss_dssp CCSCBCGGGSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHH
T ss_pred hhhhhhccCCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHH
Confidence 34566778889999999999999999999999999999999999999999999999998876655556778899999999
Q ss_pred hhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeE
Q 013008 150 VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF 229 (451)
Q Consensus 150 ~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (451)
++.++.++++|++||+||++.|+++++.++...+. ++++||+++++|||++..+..+++.+.+...+.+...++..
T Consensus 88 a~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (395)
T 3nx3_A 88 AKASALERVFFTNSGTESIEGAMKTARKYAFNKGV----KGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKF 163 (395)
T ss_dssp HHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTC----TTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEE
T ss_pred HHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhccCC----CCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEE
Confidence 99999999999999999999999999877543321 47899999999999999988888766655556677778889
Q ss_pred eeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcc
Q 013008 230 VEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309 (451)
Q Consensus 230 ~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pd 309 (451)
++++|+++|+++++ +++++|++||+++++|.++++++++++|+++|++||++||+||+|+|||++|..++.+++++.||
T Consensus 164 ~~~~d~~~l~~~l~-~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d 242 (395)
T 3nx3_A 164 AKYNDISSVEKLVN-EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPD 242 (395)
T ss_dssp ECTTCHHHHHTTCC-TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred eCCCCHHHHHHhcc-CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCC
Confidence 99999999999997 47899999999999999999999999999999999999999999999999998888889999999
Q ss_pred eeeecccccCCcccccccccHHH-HhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhC
Q 013008 310 IMTLAKPLAGGLPIGAALVTEKV-ASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLAR 374 (451)
Q Consensus 310 i~t~sK~lg~G~~iG~v~~~~~i-~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~ 374 (451)
++||||++++|+|+|++++++++ ++.+.+..+.+|+++||++++++.++|+.++++++.++ +..+
T Consensus 243 ~~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (395)
T 3nx3_A 243 IMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINE 322 (395)
T ss_dssp EEEECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccCCCceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 88888777889999999999999999997754444433 2234
Q ss_pred CCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 375 NPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 375 ~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
+|.+..+++.|.++++++.. ...++.+.|+++||++.+++. +.+||+|++.+|+|++++++++|++++++
T Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 323 FDFCKKRKGLGFMQGLSLDKSVKVAKVIQKCQENALLLISCGE-NDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp CTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeEEEEEEEEeCCcchHHHHHHHHHHCCCEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 66677788999999999853 678899999999999999875 89999999999999999999999998864
No 18
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=1.3e-58 Score=469.01 Aligned_cols=385 Identities=23% Similarity=0.363 Sum_probs=324.1
Q ss_pred chhhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCC
Q 013008 37 MVAAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGD 116 (451)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~ 116 (451)
|+.+.|.++ ++++.+++|+|+++..+.+. .+.+.|+++++++|+++||.||++||||++++++++|||+|
T Consensus 2 ~~~~~s~~~-~~~~~~~~~~g~~~~~~~~~---------~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~ 71 (429)
T 3k28_A 2 RKFDKSIAA-FEEAQDLMPGGVNSPVRAFK---------SVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHAN 71 (429)
T ss_dssp CCCHHHHHH-HHHHTTTSGGGSSSGGGGCG---------GGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSC
T ss_pred CCChhHHHH-HHHHHhhcCCCcCccccccc---------ccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCC
Confidence 345567888 99999999999988776532 23468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 013008 117 ADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195 (451)
Q Consensus 117 p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~ 195 (451)
|+|++|+.+++++..+ ..++++...+|+++|++.+ +.++++|++||+||++.|+++++.++ ++++||+
T Consensus 72 p~v~~A~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~---------~~~~vi~ 140 (429)
T 3k28_A 72 DRVVEALKAVAERGTS--FGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYT---------GRNKILK 140 (429)
T ss_dssp HHHHHHHHHHHHHCSC--CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH---------TCCEEEE
T ss_pred HHHHHHHHHHHhhCcC--cCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhh---------CCCEEEE
Confidence 9999999999988543 3466778999999999998 58999999999999999999999876 4789999
Q ss_pred EcCCccCChhhhhhccCCCCcCCCC--cCC-----CCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCH
Q 013008 196 FTNSFHGRTMGALALTSKEHYRSPF--EPV-----MPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATK 266 (451)
Q Consensus 196 ~~~~yhg~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~ 266 (451)
++++|||++..++..++........ .+. ...+..++++|+++|+++++ ++++++|++||+++++|.+++++
T Consensus 141 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~ 220 (429)
T 3k28_A 141 FIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQP 220 (429)
T ss_dssp EETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCT
T ss_pred ECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCH
Confidence 9999999998887766533211111 111 12566789999999999997 35799999999999999999999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCC---CccC
Q 013008 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGS 343 (451)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~ 343 (451)
+|+++|+++|++||++||+||||+|| ++|.+++.+++++.||++||||++++|+|+|++++++++++.+... .+.+
T Consensus 221 ~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~ 299 (429)
T 3k28_A 221 GFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAG 299 (429)
T ss_dssp THHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCC
T ss_pred HHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccC
Confidence 99999999999999999999999999 9998888889999999999999999899999999999999988643 3678
Q ss_pred CCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC--------------
Q 013008 344 TFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS-------------- 395 (451)
Q Consensus 344 t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~-------------- 395 (451)
|+++||++++|++++|+.++ +++.++ +...++.+..+++.|+++++++...
T Consensus 300 t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 378 (429)
T 3k28_A 300 TLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQ 378 (429)
T ss_dssp TTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHH
T ss_pred CCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHH
Confidence 99999999999999999765 554444 2234566677899999999987311
Q ss_pred -hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 396 -ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 396 -~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
..++++.|+++||++.|++. +.+|+ ++.+|++++++++++|++++++++
T Consensus 379 ~~~~~~~~l~~~Gv~v~~~~~-~~~r~--~~~~t~e~i~~~l~~l~~~l~~~~ 428 (429)
T 3k28_A 379 FFAAYYREMVEQGVFLPPSQF-EGLFL--STVHSDADIEATIAAAEIAMSKLK 428 (429)
T ss_dssp HHHHHHHHHHHTTEECCSSTT-SCBCC--CTTCCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCeEEecCCC-CCEEE--ECCCCHHHHHHHHHHHHHHHHHHh
Confidence 26788999999999998765 45565 789999999999999999998654
No 19
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=7.5e-63 Score=500.63 Aligned_cols=371 Identities=26% Similarity=0.313 Sum_probs=316.3
Q ss_pred hccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHH
Q 013008 40 AASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119 (451)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v 119 (451)
..|.++ ++++++++|+|+++..+.+ .++|+++++++|+++||+||++||||++++++.+|||+||+|
T Consensus 55 ~~s~~l-~~~~~~~~~~g~~~~~~~~------------~~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V 121 (465)
T 2yky_A 55 PVSAGH-HERARRSMPGGNTRSILFH------------RPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVI 121 (465)
Confidence 366777 9999999999998877654 256999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 013008 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198 (451)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~ 198 (451)
++|+.+++++... ..++++...+|+++|++++ +.++++|++||+||++.|+++++.++ +|++||++++
T Consensus 122 ~~Av~~q~~~~~~--~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~t---------gr~~ii~~~~ 190 (465)
T 2yky_A 122 RAAVERALAVGLN--LSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAIT---------GRKTVLAFDG 190 (465)
Confidence 9999999987432 3456777899999999999 58999999999999999999999876 4889999999
Q ss_pred CccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHH
Q 013008 199 SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC 276 (451)
Q Consensus 199 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~ 276 (451)
+|||++..++ ++ +. ..+. + ..+..+|+||+++|+++++. +++++|++||+++++|.++++++|+++|+++|
T Consensus 191 ~yHG~~~~~~--sg-~~-~~g~-~--~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~ 263 (465)
T 2yky_A 191 GYHGGLLNFA--SG-HA-PTNA-P--YHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEA 263 (465)
Confidence 9999998776 32 10 1111 1 14556788999999999973 57999999999999998899999999999999
Q ss_pred HHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC-----CCccCCCCCcHHH
Q 013008 277 DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY-----GDHGSTFAGSPLV 351 (451)
Q Consensus 277 ~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~-----~~~~~t~~~~~~~ 351 (451)
++||++||+||||+ | |+|.+++++++++.||++||||++++|+|+|++++++++++.+.+ ..+.+||++||++
T Consensus 264 ~~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla 341 (465)
T 2yky_A 264 SRCGALLIFDEVMT-S-RLSGGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILT 341 (465)
Confidence 99999999999999 7 899888899999999999999999999999999999999999876 2477899999999
Q ss_pred HHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecC---------------ChHHHHHH
Q 013008 352 CNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDV---------------SATPVVDA 402 (451)
Q Consensus 352 ~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~---------------~~~~~~~~ 402 (451)
|+|++++|+.++++++.++ +.++++.+..+++.|+|+++++.. ....+++.
T Consensus 342 ~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ 421 (465)
T 2yky_A 342 MSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFH 421 (465)
Confidence 9999999999877766655 222344455688999999998732 13568889
Q ss_pred HHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 403 CRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 403 l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
|+++||++.|++. .. |++++|++||++++++|+++++++++
T Consensus 422 ll~~GV~v~p~~~-~~----~s~~~t~edid~~l~~l~~~l~~~~~ 462 (465)
T 2yky_A 422 MLRKGIYLAPRGM-YA----LSLEIADAGRDAFAEALADFIGEQRA 462 (465)
Confidence 9999999998764 22 78999999999999999999987753
No 20
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=2.6e-57 Score=459.37 Aligned_cols=380 Identities=23% Similarity=0.350 Sum_probs=309.9
Q ss_pred ccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHH
Q 013008 41 ASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120 (451)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~ 120 (451)
.|.++ ++++.+++|+|+++..+.+ ..|.+.|+++++++|+++||.||++||||.+++++++|||+||+|+
T Consensus 6 ~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~ 75 (429)
T 4e77_A 6 KSENL-YAQAQQLIPGGVNSPVRAF---------TGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIR 75 (429)
T ss_dssp HHHHH-HHHHHHHSGGGCSSGGGGT---------TTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHH
T ss_pred hhHHH-HHHHHhhcCCCcCcccccc---------cccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHH
Confidence 45667 8999999999987665432 2345689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCC
Q 013008 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199 (451)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~ 199 (451)
+|+.+++++..+ ..++++...+|+++|++.++ .++++|++||+||++.|+++++.++ ++++||+++++
T Consensus 76 ~A~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~---------~~~~ii~~~~~ 144 (429)
T 4e77_A 76 QAVIEAVERGLS--FGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYT---------GRDKIIKFEGC 144 (429)
T ss_dssp HHHHHHHTTCSC--CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEETTC
T ss_pred HHHHHHHHhCcc--cCCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhh---------CCCEEEEEcCc
Confidence 999999987543 33567789999999999984 8999999999999999999999876 47899999999
Q ss_pred ccCChhhhhhccCCCCc--CC----CC-cCCCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCHHHHH
Q 013008 200 FHGRTMGALALTSKEHY--RS----PF-EPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (451)
Q Consensus 200 yhg~~~~~~~~~~~~~~--~~----~~-~~~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~ 270 (451)
|||++...+...+.... .. .+ ......+..++++|+++|+++++ ++++++|++||+++++|.+.++++|++
T Consensus 145 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~ 224 (429)
T 4e77_A 145 YHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLP 224 (429)
T ss_dssp CCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHH
T ss_pred cCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHH
Confidence 99999765543321110 00 00 11223456788999999999997 357999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCC---CccCCCCC
Q 013008 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGSTFAG 347 (451)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~t~~~ 347 (451)
+|+++|++||++||+||||+|| |+|..++.+++++.||++||||++++|+|+|++++++++++.+... .+.+||++
T Consensus 225 ~l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~ 303 (429)
T 4e77_A 225 GLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSG 303 (429)
T ss_dssp HHHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCC
T ss_pred HHHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCC
Confidence 9999999999999999999999 9998888899999999999999999999999999999999998753 47789999
Q ss_pred cHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC----------------hH
Q 013008 348 SPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS----------------AT 397 (451)
Q Consensus 348 ~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~----------------~~ 397 (451)
||++++++.++|+.++++++.++ +...++....+++.|+++++++... ..
T Consensus 304 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (429)
T 4e77_A 304 NPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFK 383 (429)
T ss_dssp CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHH
Confidence 99999999999998866655544 2233465667889999999998432 16
Q ss_pred HHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 398 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 398 ~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
++++.|+++||++.+++. . |+++++.+|+|++++++++|++++++
T Consensus 384 ~~~~~l~~~Gi~v~~~~~-~--~~~~~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 384 RFFHLMLEEGVYLAPSAF-E--AGFMSLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp HHHHHHHHTTEECCSSTT-S--CEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCeEEeecCC-C--CEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 789999999999998865 3 34568999999999999999998864
No 21
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=1.5e-56 Score=452.74 Aligned_cols=380 Identities=39% Similarity=0.707 Sum_probs=312.4
Q ss_pred HHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHH
Q 013008 63 KEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQ 142 (451)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~ 142 (451)
..+++...++.++.|.+.|+++++++|+++||.||++||||.+++++.++||+||+|++|+.++++++.+.+..+..+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~ 101 (420)
T 2pb2_A 22 AITRATFDEVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPA 101 (420)
T ss_dssp -----------------CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHH
T ss_pred HHHHHHHHHhhhccccCCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHHH
Confidence 34445556667777888899999999999999999999999999999999999999999999999886554444567779
Q ss_pred HHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcC
Q 013008 143 IELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEP 222 (451)
Q Consensus 143 ~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 222 (451)
.+|+++|+++++.++|+|++||+||++.|+++++.++..++.+ ++++||+++++|||++..++.+++...+..++.|
T Consensus 102 ~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~---g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p 178 (420)
T 2pb2_A 102 LRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSP---FKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGP 178 (420)
T ss_dssp HHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCT---TCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSS
T ss_pred HHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCC---CCCEEEEEeCCcCCcCHHHHHhcCCccccccCCC
Confidence 9999999999999999999999999999999998764332221 3568999999999999888777665544455667
Q ss_pred CCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccc
Q 013008 223 VMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE 302 (451)
Q Consensus 223 ~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~ 302 (451)
..+++..++++|+++|++++++ ++++|++||+++++|.++++.+++++|+++|++||++||+||+|+|||++|.+++++
T Consensus 179 ~~~~~~~~~~~d~~~le~~i~~-~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~ 257 (420)
T 2pb2_A 179 KPADIIHVPFNDLHAVKAVMDD-HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYM 257 (420)
T ss_dssp CCSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHH
T ss_pred CCCCeEEecCCCHHHHHHHhcc-CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHH
Confidence 7788888999999999999974 799999999999888888999999999999999999999999999999999877778
Q ss_pred ccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------H
Q 013008 303 HYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------K 371 (451)
Q Consensus 303 ~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~ 371 (451)
.+++.||++||||++++|+|+|++++++++++.+....+..||++|+++++++.++|+.++++++.++ +
T Consensus 258 ~~~~~~diit~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L 337 (420)
T 2pb2_A 258 HYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHL 337 (420)
T ss_dssp HHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCeEEecccccCCCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999887666788999999999999999998876655544 1
Q ss_pred Hh---CCCCcceecccceeEEEEecC----ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008 372 LA---RNPHVKDVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 444 (451)
Q Consensus 372 ~~---~~~~~~~v~g~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~ 444 (451)
.+ ++|.+..+++.|.++++++.. ...++.+.|+++||++.+++. +.+|++|++.+++|++++++++|+++++
T Consensus 338 ~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~-~~iRl~~~~~~t~eei~~~~~~l~~~l~ 416 (420)
T 2pb2_A 338 QAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGA-DVMRFAPSLVVEEADIHEGMQRFAQAVG 416 (420)
T ss_dssp HHHHHHHCCEEEEEEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESST-TEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 11 345556678899999999842 467899999999999999864 8899999999999999999999999988
Q ss_pred HHh
Q 013008 445 VLD 447 (451)
Q Consensus 445 ~~~ 447 (451)
++.
T Consensus 417 ~~~ 419 (420)
T 2pb2_A 417 KVV 419 (420)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 22
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=9.5e-57 Score=454.96 Aligned_cols=381 Identities=23% Similarity=0.330 Sum_probs=320.1
Q ss_pred hccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHH
Q 013008 40 AASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADW 119 (451)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v 119 (451)
..|.++ ++++.++.|+|+++..+.+ ..+.+.|+++++|+|+++||.||++||||.++++++++||+||+|
T Consensus 4 ~~s~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v 73 (427)
T 3fq8_A 4 IKSDEI-FAAAQKLMPGGVSSPVRAF---------KSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEV 73 (427)
T ss_dssp HHHHHH-HHHHTTTSGGGSSSGGGGC---------TTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHH
T ss_pred chHHHH-HHHHHhhcCCCcccccccc---------cccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHH
Confidence 456777 9999999999987765532 134578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 013008 120 IKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198 (451)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~ 198 (451)
++|+.+++++..+ ..++++...+|+++|++.++ .++|+|++||+||++.|+++++.++ ++++||++++
T Consensus 74 ~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~---------~~~~vi~~~~ 142 (427)
T 3fq8_A 74 IEALKVAMEKGTS--FGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYT---------GRDKIIKFEG 142 (427)
T ss_dssp HHHHHHHHTTCSC--CSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEEET
T ss_pred HHHHHHHHHhCCC--cCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh---------CCCEEEEECC
Confidence 9999999987644 22467779999999999984 8899999999999999999999886 3789999999
Q ss_pred CccCChhhhhhccCCCCcCC--CCcCC-----CCCeeEeeCCCHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHHH
Q 013008 199 SFHGRTMGALALTSKEHYRS--PFEPV-----MPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFL 269 (451)
Q Consensus 199 ~yhg~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l 269 (451)
+|||++..+...++...... +..+. ..++..++++|+++|+++++. +++++|++||+++++|.+.++++|+
T Consensus 143 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l 222 (427)
T 3fq8_A 143 CYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFL 222 (427)
T ss_dssp CCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHH
T ss_pred CcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHH
Confidence 99999987766654322110 11111 123667899999999999973 4799999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCC---CccCCCC
Q 013008 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYG---DHGSTFA 346 (451)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~---~~~~t~~ 346 (451)
++|+++|++||++||+||+|+|| ++|..++.+++++.||++||||++++|+|+|++++++++++.+... .+.+|++
T Consensus 223 ~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~ 301 (427)
T 3fq8_A 223 EGLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLS 301 (427)
T ss_dssp HHHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTT
T ss_pred HHHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCC
Confidence 99999999999999999999999 9998888889999999999999999999999999999999988753 4778999
Q ss_pred CcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEecCC---------------hH
Q 013008 347 GSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFDVS---------------AT 397 (451)
Q Consensus 347 ~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~~~---------------~~ 397 (451)
+||++++++.++|+.++++++.++ +...++....+++.|+++++++... ..
T Consensus 302 ~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (427)
T 3fq8_A 302 GNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFS 381 (427)
T ss_dssp TCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHH
Confidence 999999999999998866655544 2223444456788999999988321 35
Q ss_pred HHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 398 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 398 ~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
++++.|+++||++.+++. .|+++++.+|+|++++++++|++++++
T Consensus 382 ~l~~~l~~~Gi~v~~~~~---~r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 382 RFHRGMLEQGIYLAPSQF---EAGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp HHHHHHHHTTEECCSSTT---SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcEEecCCC---CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 788999999999998765 267789999999999999999999875
No 23
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=7.2e-57 Score=456.27 Aligned_cols=372 Identities=31% Similarity=0.474 Sum_probs=296.6
Q ss_pred cccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHh
Q 013008 72 LLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLV 150 (451)
Q Consensus 72 ~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~ 150 (451)
+.++.|.+.|+++++|+|+++||.||++||||.+++++++|||+||+|++|+.+++++..+++. .++++...+|+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la 82 (430)
T 3i4j_A 3 NVFYRSSKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLA 82 (430)
T ss_dssp CBCCSSSSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHH
T ss_pred ccccCCCCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHH
Confidence 3455666789999999999999999999999999999999999999999999999988665433 456677999999999
Q ss_pred hccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC--C
Q 013008 151 ACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--G 226 (451)
Q Consensus 151 ~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~ 226 (451)
+.++ .++|+|++||+||++.|+++++.+...++.. ++++||+++++|||++..+..+++...+...+.+..+ +
T Consensus 83 ~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (430)
T 3i4j_A 83 RFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEP---GRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEA 159 (430)
T ss_dssp HHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTC-------------------------CGGG
T ss_pred HhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCC
Confidence 9985 7899999999999999999998775443322 5789999999999999888887776655555666666 7
Q ss_pred eeEeeCC--------CHHHHHHhcCC---CCeEEEEEccccC-CCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Q 013008 227 VNFVEYG--------NIEATRKLIQP---GKTAAVFVEPIQG-EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294 (451)
Q Consensus 227 ~~~~~~~--------d~~~le~~l~~---~~~aavi~ep~~~-~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr 294 (451)
+..++++ |+++|+++++. +++++|++||+++ ++|.++++++++++|+++|++||++||+||||+|||+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~ 239 (430)
T 3i4j_A 160 WPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGR 239 (430)
T ss_dssp SCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred ceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence 7777776 45899998862 6789999999999 9999999999999999999999999999999999999
Q ss_pred cccccccccc-CCCcceeeecccccCC-cccccccccHHHHhhccCC----CccCCCCCcHHHHHHHHHHHHHhcChHHH
Q 013008 295 TGYLWAHEHY-GIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG----DHGSTFAGSPLVCNAAIAVLDKISNPAFL 368 (451)
Q Consensus 295 ~G~~~~~~~~-~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~----~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 368 (451)
+|..++.+++ ++.||++||||++++| +|+|++++++++++.+... .+.+||++||++|+|++++|+.++++++.
T Consensus 240 ~g~~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 319 (430)
T 3i4j_A 240 CGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLT 319 (430)
T ss_dssp TSSSSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred ccchhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHH
Confidence 9998888999 9999999999999999 9999999999999988653 57789999999999999999977555444
Q ss_pred HH--------------HHhCCCCcceecccceeEEEEec-----------CChHHHHHHHHHCCceeeec-----CC-CC
Q 013008 369 AS--------------KLARNPHVKDVRGLGLIIGIEFD-----------VSATPVVDACRDSGLLVLTA-----GK-GN 417 (451)
Q Consensus 369 ~~--------------~~~~~~~~~~v~g~G~~~~~~~~-----------~~~~~~~~~l~~~Gv~~~~~-----~~-~~ 417 (451)
++ +.+++|.+..+++.|+++++++. ....++++.|+++||++.|+ +. ++
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~ 399 (430)
T 3i4j_A 320 GAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGD 399 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC-----------C
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCC
Confidence 33 23356777788999999999883 11367899999999999886 11 47
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 418 VVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 418 ~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
.+||+|++.+|+|++++++++|+++++++
T Consensus 400 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 400 HLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999865
No 24
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=6.6e-56 Score=450.38 Aligned_cols=358 Identities=30% Similarity=0.526 Sum_probs=304.5
Q ss_pred CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHhhccC--C-
Q 013008 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF--A- 155 (451)
Q Consensus 80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~--~- 155 (451)
.|+++++++|.++||.+|++||||.+++++.+|||+||+|++|+.+++++..+.+ ..+.++.+.+++++|+++++ .
T Consensus 25 ~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 104 (439)
T 3dxv_A 25 FPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGT 104 (439)
T ss_dssp SCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTT
T ss_pred CCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 6899999999999999999999999999999999999999999999998865433 34566779999999999984 5
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC--cCCCCcCCCCCeeEeeCC
Q 013008 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH--YRSPFEPVMPGVNFVEYG 233 (451)
Q Consensus 156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 233 (451)
++++|++||++|++.|+++++.++ ++++||+++++|||++..++.+++... ++..+.+..+++..++++
T Consensus 105 ~~v~~~~ggsea~~~al~~~~~~~---------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (439)
T 3dxv_A 105 HKIWFGHSGSDANEAAYRAIVKAT---------GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR 175 (439)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHH---------SCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHh---------CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC
Confidence 799999999999999999988776 378899999999999999888876554 555555555556666766
Q ss_pred ----------CHHHHHHhcC---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc
Q 013008 234 ----------NIEATRKLIQ---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300 (451)
Q Consensus 234 ----------d~~~le~~l~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~ 300 (451)
|+++|+++++ .+++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+|||++|.+++
T Consensus 176 ~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~ 255 (439)
T 3dxv_A 176 PYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHC 255 (439)
T ss_dssp CBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSG
T ss_pred cccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhH
Confidence 6999999993 457999999999999999999999999999999999999999999999999998888
Q ss_pred ccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------
Q 013008 301 HEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---------- 370 (451)
Q Consensus 301 ~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---------- 370 (451)
.+++++.||++||||++++|+|+|++++++++++.+....+.+|+ +||+++++++++|+.++++++.++
T Consensus 256 ~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 3dxv_A 256 FEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRD 334 (439)
T ss_dssp GGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999877778899 999999999999997755544433
Q ss_pred ----HHhCCCCcceecccceeEEEEec----------CChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHH
Q 013008 371 ----KLARNPHVKDVRGLGLIIGIEFD----------VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQA 435 (451)
Q Consensus 371 ----~~~~~~~~~~v~g~G~~~~~~~~----------~~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~ 435 (451)
+...++.+..+++.|.++++++. ....++.+.|+++||++.+++. ++.+||+|++.+|+++++++
T Consensus 335 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~ 414 (439)
T 3dxv_A 335 GLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKA 414 (439)
T ss_dssp HHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHH
T ss_pred HHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHH
Confidence 22346767778899999999872 1246788999999999998764 47899999999999999999
Q ss_pred HHHHHHHHHHHh
Q 013008 436 VEILCKTLPVLD 447 (451)
Q Consensus 436 l~~l~~~l~~~~ 447 (451)
+++|+++++++.
T Consensus 415 l~~l~~~l~~~~ 426 (439)
T 3dxv_A 415 LDLLDRAFSELS 426 (439)
T ss_dssp HHHHHHHHHTGG
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 25
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=1.6e-54 Score=439.70 Aligned_cols=380 Identities=23% Similarity=0.332 Sum_probs=310.1
Q ss_pred ccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHH
Q 013008 41 ASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWI 120 (451)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~ 120 (451)
.|.++ ++++.++.++|+.+..+.+ +.++|+++++++|+++||.||++||||.++++++++||+||+|+
T Consensus 11 ~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~ 78 (434)
T 2epj_A 11 KSRML-FERTKELFPGGVNSPVRAA-----------VKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVL 78 (434)
T ss_dssp HHHHH-HHHHTTTSGGGSSSGGGGG-----------CSSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHH
T ss_pred chHHH-HHHHHhhcCCCcCcccccc-----------cCCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHH
Confidence 45556 8888888888876655432 02569999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCC
Q 013008 121 KAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNS 199 (451)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~ 199 (451)
+|+.+++++..+ ..+..+...+++++|++++ +.++|+|++||+||++.|+++++.++ ++++||+++++
T Consensus 79 ~a~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~---------~~~~vi~~~~~ 147 (434)
T 2epj_A 79 EAVEEALARGWL--YGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYT---------GRDLILKFDGC 147 (434)
T ss_dssp HHHHHHHHTCSC--CSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHH---------CCCEEEEEETC
T ss_pred HHHHHHHHhCCC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh---------CCCeEEEEcCC
Confidence 999999987432 3356777899999999998 68999999999999999999988776 37889999999
Q ss_pred ccCChhhhhhccCCCCcC--CCCcC-C----CCCeeEeeCCCHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHHHH
Q 013008 200 FHGRTMGALALTSKEHYR--SPFEP-V----MPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQ 270 (451)
Q Consensus 200 yhg~~~~~~~~~~~~~~~--~~~~~-~----~~~~~~~~~~d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~ 270 (451)
|||++..++..++..... .+... . ...+..++++|+++|+++++. +++++|++||+++++|.++++++|++
T Consensus 148 yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~ 227 (434)
T 2epj_A 148 YHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLA 227 (434)
T ss_dssp CCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHH
T ss_pred cCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHH
Confidence 999988776554321100 00000 0 124667888999999999973 47999999999999998888999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC-C--CccCCCCC
Q 013008 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY-G--DHGSTFAG 347 (451)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~-~--~~~~t~~~ 347 (451)
+|+++|++||++||+||+|+|| ++|..++++++++.||++||||++++|+|+|++++++++++.+.. . .+.+||++
T Consensus 228 ~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~ 306 (434)
T 2epj_A 228 ALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNA 306 (434)
T ss_dssp HHHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred HHHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCc
Confidence 9999999999999999999999 788777788889999999999999999999999999999998875 2 35689999
Q ss_pred cHHHHHHHHHHHHHhcChHHHHH-----------HH---hCCCCcceecccceeEEEEecC---------------ChHH
Q 013008 348 SPLVCNAAIAVLDKISNPAFLAS-----------KL---ARNPHVKDVRGLGLIIGIEFDV---------------SATP 398 (451)
Q Consensus 348 ~~~~~aaa~aal~~~~~~~~~~~-----------~~---~~~~~~~~v~g~G~~~~~~~~~---------------~~~~ 398 (451)
||++++++.++|+.++++++.++ +. .+++....+++.|.++++++.. ...+
T Consensus 307 ~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 386 (434)
T 2epj_A 307 HPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVK 386 (434)
T ss_dssp CHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHH
Confidence 99999999999998754444433 11 1224444578899999999843 1457
Q ss_pred HHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 399 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 399 ~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
+.+.|+++||++.+++. . |+++++.+|++++++++++|+++++++.
T Consensus 387 ~~~~l~~~Gv~v~~~~~-~--~~~~~~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 387 LHEEMLRRGVFIAPSNL-E--AVFTGLPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp HHHHHHHTTEECCSSTT-S--CEECCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEeccCC-C--cEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 88999999999998765 3 4567899999999999999999998764
No 26
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=3.1e-54 Score=436.21 Aligned_cols=379 Identities=27% Similarity=0.398 Sum_probs=311.0
Q ss_pred hhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHH
Q 013008 39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD 118 (451)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~ 118 (451)
...|.++ ++++.+++++|++++.+.+. .|...|+++++++|+++||.||++||||.++.+++++||+||+
T Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~ 72 (424)
T 2e7u_A 3 RPISEAY-FQEAKRHIPGGVSSPVRAFK---------AVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPK 72 (424)
T ss_dssp CHHHHHH-HHHHHHHSGGGSSSGGGGCT---------TTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHH
T ss_pred CchHHHH-HHHHHHhcCCCcCCcceecc---------ccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHH
Confidence 3456677 89999999999887776431 2345699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 013008 119 WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197 (451)
Q Consensus 119 v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~ 197 (451)
|++|+.+++++..+ ..+.++...+++++|++++ +.++|+|++||+||++.|+++++.+++ +++||+++
T Consensus 73 v~~a~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~---------~~~vi~~~ 141 (424)
T 2e7u_A 73 VLARVRETLERGLT--FGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTG---------RPYIVKFR 141 (424)
T ss_dssp HHHHHHHHHHTCSC--CSSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHC---------CCEEEEET
T ss_pred HHHHHHHHHHhCCC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC---------CCEEEEEC
Confidence 99999999987432 2356777899999999999 689999999999999999999888773 78899999
Q ss_pred CCccCChhhhhhccCCCC--cCCCCcCC-----CCCeeEeeCCCHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHH
Q 013008 198 NSFHGRTMGALALTSKEH--YRSPFEPV-----MPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEF 268 (451)
Q Consensus 198 ~~yhg~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~ 268 (451)
|+|||++..++...+... +..+.... ...+..++++|+++|+++++. +++++|++||+++++|.++++++|
T Consensus 142 ~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~ 221 (424)
T 2e7u_A 142 GNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDF 221 (424)
T ss_dssp TCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHH
T ss_pred CCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHH
Confidence 999999887765543211 10001000 124567788999999999862 478999999999999988899999
Q ss_pred HHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC-C--CccCCC
Q 013008 269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY-G--DHGSTF 345 (451)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~-~--~~~~t~ 345 (451)
+++|+++ ++||++||+||+|+|| ++|..++++++++.||++||||++++|+|+|++++++++++.+.. . .+.+||
T Consensus 222 l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~ 299 (424)
T 2e7u_A 222 LKALHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTL 299 (424)
T ss_dssp HHHHHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTT
T ss_pred HHHHHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCC
Confidence 9999999 9999999999999999 888777788889999999999999999999999999999998875 2 367799
Q ss_pred CCcHHHHHHHHHHHHHhcC-hHHHHH-----------H---HhCCCCcceecccceeEEEEecC---------------C
Q 013008 346 AGSPLVCNAAIAVLDKISN-PAFLAS-----------K---LARNPHVKDVRGLGLIIGIEFDV---------------S 395 (451)
Q Consensus 346 ~~~~~~~aaa~aal~~~~~-~~~~~~-----------~---~~~~~~~~~v~g~G~~~~~~~~~---------------~ 395 (451)
++||++++++.++|+.+++ +++.++ + .++++.+..+++.|+++++++.. .
T Consensus 300 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 379 (424)
T 2e7u_A 300 SGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTEL 379 (424)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHH
T ss_pred CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHH
Confidence 9999999999999998755 555444 1 12245444578899999999842 1
Q ss_pred hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 396 ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 396 ~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
..++++.|+++||++.+++. . |+++++.+|++++++++++|++++
T Consensus 380 ~~~~~~~l~~~Gv~v~~~~~-~--~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 380 FKRFFHGLLDRGIYWPPSNF-E--AAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp HHHHHHHHHTTTEECCSSSS-S--CEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCeEEeccCC-C--ceEeeccCCHHHHHHHHHHHHHhC
Confidence 34688899999999998764 3 456789999999999999998763
No 27
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=6.7e-54 Score=434.77 Aligned_cols=374 Identities=31% Similarity=0.516 Sum_probs=306.8
Q ss_pred HHHHHHHHhcccccCCC-CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH
Q 013008 63 KEVMEAEKKLLVGTYNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP 141 (451)
Q Consensus 63 ~~~~~~~~~~~~~~~~~-~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 141 (451)
+++.++..++....+.. .|+++.+++|+++||.+|++||||.++.++.+|||+||+|++|+.+++++..+.+..+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 86 (433)
T 1zod_A 7 ATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRP 86 (433)
T ss_dssp HHHHHHHHHHCCCCSSCCCSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHH
T ss_pred HHHHHHHHHhhcccccccCCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcccccccCCHH
Confidence 33444444444434433 48899999999999999999999999999999999999999999999988654334556777
Q ss_pred HHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008 142 QIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (451)
Q Consensus 142 ~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (451)
..+++++|+++++ .++|+|++||+||++.|+++++.++ ++++||+++|+|||++..++..++... ...
T Consensus 87 ~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~---------~~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~ 156 (433)
T 1zod_A 87 VVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVT---------GKYEIVGFAQSWHGMTGAAASATYSAG-RKG 156 (433)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHH---------TCCEEEEETTCCCCSSHHHHHTCCSSC-CSS
T ss_pred HHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhh---------CCCeEEEECCCcCCCChhHHhhcCCcc-ccc
Confidence 8999999999986 7899999999999999999888665 367899999999999988887765432 223
Q ss_pred CcCCCCCeeEee--------CC---------CHHHHHHhcCC---CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHh
Q 013008 220 FEPVMPGVNFVE--------YG---------NIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA 279 (451)
Q Consensus 220 ~~~~~~~~~~~~--------~~---------d~~~le~~l~~---~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 279 (451)
+.+...++..++ ++ |+++|+++++. +++++|++||+++++|.++++++++++|+++|++|
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~ 236 (433)
T 1zod_A 157 VGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR 236 (433)
T ss_dssp SCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH
T ss_pred cCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh
Confidence 334444554443 33 38999998862 57899999999999898889999999999999999
Q ss_pred CCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHH
Q 013008 280 GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIA 357 (451)
Q Consensus 280 g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~a 357 (451)
|++||+||||+|||++|..++++.+++.||+++|||++++|+|+|++++++++++.+.... +++|+++|+++++|+.+
T Consensus 237 ~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a 316 (433)
T 1zod_A 237 GMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLR 316 (433)
T ss_dssp TCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHH
T ss_pred CCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHH
Confidence 9999999999999999987777888999999999999999999999999999998886533 44899999999999999
Q ss_pred HHHHhcChHHHHH-----------H---HhCCCCcceecccceeEEEEecC----------ChHHHHHHHHHCCceeeec
Q 013008 358 VLDKISNPAFLAS-----------K---LARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTA 413 (451)
Q Consensus 358 al~~~~~~~~~~~-----------~---~~~~~~~~~v~g~G~~~~~~~~~----------~~~~~~~~l~~~Gv~~~~~ 413 (451)
+|+.++++++.++ + ..+++.+..+++.|+++++++.. ...++.+.|+++||++.++
T Consensus 317 al~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 396 (433)
T 1zod_A 317 VLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIV 396 (433)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEE
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEecc
Confidence 9987755444433 2 12356566678899999998731 2567999999999999987
Q ss_pred CC-C--CEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 414 GK-G--NVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 414 ~~-~--~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
+. + +++||+|++.+|++++++++++|+++++++
T Consensus 397 ~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 397 QLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp CCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence 53 3 789999999999999999999999998764
No 28
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=1.6e-54 Score=441.41 Aligned_cols=379 Identities=27% Similarity=0.396 Sum_probs=308.7
Q ss_pred hHHHHHHHHhcc-cccCCCCceEEEeecccEEEe-cCCCEEEeeccCcccccCCCCCHHHH-H-HHHH---HHhhccccc
Q 013008 62 NKEVMEAEKKLL-VGTYNRAPVVLASGKGCKLYD-AEGREYLDLSSGIAVNALGHGDADWI-K-AVVD---QANVLTHVS 134 (451)
Q Consensus 62 ~~~~~~~~~~~~-~~~~~~~p~~~~~~~G~~l~d-~~G~~~iD~~~~~~~~~lG~~~p~v~-~-a~~~---~~~~~~~~~ 134 (451)
.+.+.+...++. ...| +.++.+++++|+++|| .||++||||++++++++|||+||+|+ + |+.+ ++++..+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~ 95 (449)
T 2cjg_A 17 PDRVHEVLGRSMLVDGL-DIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN 95 (449)
T ss_dssp GGGHHHHHHTTSCCCSC-SSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHhhcccCC-CeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344554555554 3333 3444456999999999 99999999999999999999999999 9 9999 888765443
Q ss_pred CCCCCHHHHHHHHHHhhcc---CCCeEEecCCHHHHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEcCCccCChhhhh
Q 013008 135 NMYYSIPQIELAKRLVACS---FADRVFFSNTGTEANEAAIKFARKFQRHS---NPDSKEPATEFVSFTNSFHGRTMGAL 208 (451)
Q Consensus 135 ~~~~~~~~~~l~~~l~~~~---~~e~v~~~~sG~eA~~~al~~a~~~~~~~---~~~~~~~~~~ii~~~~~yhg~~~~~~ 208 (451)
..+.++...+++++|++++ +.++|+|++||+||++.|+++++.+++.. .+.+.+++++||+++++|||++..++
T Consensus 96 ~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~ 175 (449)
T 2cjg_A 96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTL 175 (449)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGG
T ss_pred cccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchh
Confidence 4466777899999999987 37899999999999999999998877521 00000137899999999999999888
Q ss_pred hccCC-CCcCCCCcCCCCCeeEeeCCC--HH-------------HHHHhcC--CCCeEEEEEccccCCCCccccCHHHHH
Q 013008 209 ALTSK-EHYRSPFEPVMPGVNFVEYGN--IE-------------ATRKLIQ--PGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (451)
Q Consensus 209 ~~~~~-~~~~~~~~~~~~~~~~~~~~d--~~-------------~le~~l~--~~~~aavi~ep~~~~~G~~~~~~~~l~ 270 (451)
.+++. +.++..+.|..+++..+|++| .+ +|+++++ .+++++|++||+++++|.++++++|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~ 255 (449)
T 2cjg_A 176 SLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFA 255 (449)
T ss_dssp GTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHH
T ss_pred hhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHH
Confidence 87765 333445556667788888877 43 3888885 357899999999999998899999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhc-----cCCCccCCC
Q 013008 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAI-----NYGDHGSTF 345 (451)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~-----~~~~~~~t~ 345 (451)
+|+++|++||++||+||||+|||++|.+++++++++.||++||||++ |+|++++++++++.+ ....+.+|+
T Consensus 256 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~ 331 (449)
T 2cjg_A 256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLNSTW 331 (449)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSCCSS
T ss_pred HHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccccCC
Confidence 99999999999999999999999999887888889999999999999 899999999999863 334567899
Q ss_pred CCcHHHHHHHHHHHHHhcChHHHHH-----------HH---hCCCC-cceecccceeEEEEecC--ChHHHHHHHHHCCc
Q 013008 346 AGSPLVCNAAIAVLDKISNPAFLAS-----------KL---ARNPH-VKDVRGLGLIIGIEFDV--SATPVVDACRDSGL 408 (451)
Q Consensus 346 ~~~~~~~aaa~aal~~~~~~~~~~~-----------~~---~~~~~-~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv 408 (451)
++|+++++|+.++|+.++++++.++ +. .+++. +..+++.|+++++++.. ...++++.|+++||
T Consensus 332 ~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gv 411 (449)
T 2cjg_A 332 GGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTADRDELIRQLWQRAV 411 (449)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSSHHHHHHHHHHHHHTTE
T ss_pred CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECChHHHHHHHHHHHHCCe
Confidence 9999999999999997755544443 21 24565 66788999999998842 35679999999999
Q ss_pred eeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 409 LVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 409 ~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
++.+++. +++|++|++.+|+++|++++++|+++++++
T Consensus 412 ~v~~~g~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 412 IVLPAGA-DTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp ECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999875 899999999999999999999999998764
No 29
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=7.7e-53 Score=421.25 Aligned_cols=375 Identities=35% Similarity=0.609 Sum_probs=323.7
Q ss_pred HHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHH
Q 013008 65 VMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIE 144 (451)
Q Consensus 65 ~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
+++.+.++..+.|.+.|+++++++|+++||.+|++||||.+++++.++||+||+|.+++.+++++..+.+..+..+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~ 82 (392)
T 3ruy_A 3 IIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGP 82 (392)
T ss_dssp HHHHHHHHBCTTCCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHH
T ss_pred HHHHHHhhhhccCCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHH
Confidence 44556677778888999999999999999999999999999999999999999999999999988766554455666899
Q ss_pred HHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhh-hcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC
Q 013008 145 LAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR-HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV 223 (451)
Q Consensus 145 l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~-~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 223 (451)
++++|++.++.++++|++||++|++.++++++.+.. .++.+ +++++||+++++|||.+..+..+++...+...+.+.
T Consensus 83 l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~--~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (392)
T 3ruy_A 83 WYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVE--ANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPM 160 (392)
T ss_dssp HHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCC--TTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSC
T ss_pred HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCC--CCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCC
Confidence 999999999999999999999999999998876521 11110 146799999999999999988887776666667777
Q ss_pred CCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccc
Q 013008 224 MPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEH 303 (451)
Q Consensus 224 ~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~ 303 (451)
.+++..++++|+++|+++++ .++++|+++|+++++|.+.++++++++|+++|++||++||+||+|++||++|..++.+.
T Consensus 161 ~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~ 239 (392)
T 3ruy_A 161 LPGIIVIPYGDLEALKAAIT-PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDW 239 (392)
T ss_dssp CSSEEEECTTCHHHHHHHCC-TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred CCCCeeeCcccHHHHHHHhc-cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhc
Confidence 77888889999999999997 57999999999999999888999999999999999999999999999999998888888
Q ss_pred cCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HH
Q 013008 304 YGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KL 372 (451)
Q Consensus 304 ~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~ 372 (451)
+++.||+++|||+++|| +|+|++++++++++.+....+..+++.|+++++++.++|+.++.+++.++ .+
T Consensus 240 ~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L 319 (392)
T 3ruy_A 240 DNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQL 319 (392)
T ss_dssp GTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 89999999999999999 99999999999999998777888999999999999999997754433333 22
Q ss_pred hCC--CCcceecccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 373 ARN--PHVKDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 373 ~~~--~~~~~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
+.+ +.+..+++.|.++++.+.....++.+.|.++||++.|++. +.+|++|++.++++++++++++|++++
T Consensus 320 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 320 KEIDNPMITEVRGKGLFIGIELNEPARPYCEQLKAAGLLCKETHE-NVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp TTCCCTTEEEEEEETTEEEEEESSCSHHHHHHHHTTTEECCCBTT-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCceEEEeeeeEEEEEEcchHHHHHHHHHHCCcEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 333 4466677889999998855678899999999999998875 899999999999999999999999876
No 30
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=2.5e-52 Score=419.18 Aligned_cols=374 Identities=42% Similarity=0.723 Sum_probs=324.4
Q ss_pred HhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH
Q 013008 70 KKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRL 149 (451)
Q Consensus 70 ~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l 149 (451)
.++..+.|.+.|+++++++|+++||.+|++||||.++.++.++||+||++.+++.+++++..+.+..+..+...+++++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l 90 (406)
T 4adb_A 11 DEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKL 90 (406)
T ss_dssp HHHBCSSCCCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHH
T ss_pred HHHhhhhcCCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHH
Confidence 34566778888999999999999999999999999999999999999999999999998865544556677799999999
Q ss_pred hhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeE
Q 013008 150 VACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF 229 (451)
Q Consensus 150 ~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (451)
+++++.+++++++||++|++.++++++.+...++.+ ++++||+++|+||++...+...++...+...+.+...++..
T Consensus 91 a~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~---g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (406)
T 4adb_A 91 IDATFADRVFFCNSGAEANEAALKLARKFAHDRYGS---HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRH 167 (406)
T ss_dssp HHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCT---TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEE
T ss_pred HhhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceE
Confidence 999999999999999999999999888653322221 46899999999999998888888766666566677778889
Q ss_pred eeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcc
Q 013008 230 VEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD 309 (451)
Q Consensus 230 ~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pd 309 (451)
+|++|+++|+++++ +++++|+++|+++++|+++++.+++++|+++|++||++||+||+|+||+++|..++.+.+++.||
T Consensus 168 ~~~~d~~~l~~~l~-~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d 246 (406)
T 4adb_A 168 AAYNDINSASALID-DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPD 246 (406)
T ss_dssp ECTTCHHHHHTTCS-TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCS
T ss_pred eCCCcHHHHHHHhc-CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCC
Confidence 99999999999997 47899999999999998888999999999999999999999999999999998877888899999
Q ss_pred eeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------HH---hCC
Q 013008 310 IMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------KL---ARN 375 (451)
Q Consensus 310 i~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~~---~~~ 375 (451)
++||||++++|+|+|++++++++++.+....+..+++.++++++++.++|+.++.+++.++ +. ..+
T Consensus 247 ~~t~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 326 (406)
T 4adb_A 247 LLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRY 326 (406)
T ss_dssp EEEECGGGGTTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEechhhcCCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999998899999999999999998777888999999999999999998766555444 11 112
Q ss_pred CCcceecccceeEEEEecC----ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 376 PHVKDVRGLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 376 ~~~~~v~g~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
+....+++.|.++++.+.. ...++++.|+++||++.+++. +.+|+++++.++++++++++++|++++++++.
T Consensus 327 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~-~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 327 GLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGG-NVVRFAPALNVSEEEVTTGLDRFAAACEHFVS 402 (406)
T ss_dssp CCEEEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESST-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCceEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecCC-CeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3455577889999999853 578899999999999999875 88999999999999999999999999988764
No 31
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=9.8e-54 Score=437.96 Aligned_cols=377 Identities=26% Similarity=0.368 Sum_probs=289.2
Q ss_pred chHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhc--ccccCCC-
Q 013008 61 NNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL--THVSNMY- 137 (451)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~~~- 137 (451)
..+++.++..++......+.|+.+++++|+++||.||++||||++|+++.+|||+||+|++|+.+++... .+.+..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~ 105 (472)
T 1ohv_A 26 RSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI 105 (472)
T ss_dssp HHHHHHHHHHHHSCCTTCCCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT
T ss_pred cHHHHHHHHHhhhccccccCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc
Confidence 3455555555544333344677889999999999999999999999999999999999999999987543 2221111
Q ss_pred --CCHHHHHHHHHHhhcc--CCCeEEecCCHHHHHHHHHHHHHHHhhh--cC----------------CCCCCCCceEEE
Q 013008 138 --YSIPQIELAKRLVACS--FADRVFFSNTGTEANEAAIKFARKFQRH--SN----------------PDSKEPATEFVS 195 (451)
Q Consensus 138 --~~~~~~~l~~~l~~~~--~~e~v~~~~sG~eA~~~al~~a~~~~~~--~~----------------~~~~~~~~~ii~ 195 (451)
..+...+++++|+++. +.++|+|++||+|||+.|+++++.|+.. ++ .++ .++++||+
T Consensus 106 ~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g-~~r~~ii~ 184 (472)
T 1ohv_A 106 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPG-CPDYSILS 184 (472)
T ss_dssp SCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTT-SCCCEEEE
T ss_pred ccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCccccccccccccccccccc-CCCCeEEE
Confidence 2344666666677776 4789999999999999999999877521 11 010 01589999
Q ss_pred EcCCccCChhhhhhccCCCCcCCCCcCCCCCeeE-------------eeCC------CHHHHHHhcCC-----CCeEEEE
Q 013008 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNF-------------VEYG------NIEATRKLIQP-----GKTAAVF 251 (451)
Q Consensus 196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~------d~~~le~~l~~-----~~~aavi 251 (451)
++++|||++.+++.+++...++....+. .++.+ .++| |+++|+++|++ .++++|+
T Consensus 185 ~~~~yHg~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vi 263 (472)
T 1ohv_A 185 FMGAFHGRTMGCLATTHSKAIHKIDIPS-FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGII 263 (472)
T ss_dssp ETTCCCCSSHHHHHHCCSCHHHHTTSCC-CCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ECCCcccccHHHHhcCCCccccccCCCC-CCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 9999999999998887643221101111 01000 1122 68899999863 1799999
Q ss_pred EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCC--cceeeeccc-ccCCcccccccc
Q 013008 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIF--PDIMTLAKP-LAGGLPIGAALV 328 (451)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~--pdi~t~sK~-lg~G~~iG~v~~ 328 (451)
+||+++++|.++++++||++|+++|++||++||+||||+|||++|.+++++++++. ||++||||+ ++||++ +
T Consensus 264 ve~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~~----~- 338 (472)
T 1ohv_A 264 VEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFF----H- 338 (472)
T ss_dssp ECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEEE----E-
T ss_pred EcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCcc----C-
Confidence 99999999999999999999999999999999999999999999988888889987 999999999 776544 3
Q ss_pred cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------H---HhCCC-CcceecccceeEEEEec
Q 013008 329 TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------K---LARNP-HVKDVRGLGLIIGIEFD 393 (451)
Q Consensus 329 ~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~---~~~~~-~~~~v~g~G~~~~~~~~ 393 (451)
++++. .+....+.+|+++||++|++++++|+.++++++.++ + ..++| .+..+++.|+++++++.
T Consensus 339 ~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~ 417 (472)
T 1ohv_A 339 KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTP 417 (472)
T ss_dssp CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECS
T ss_pred chhhc-ccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeC
Confidence 55552 344456788999999999999999998765544443 1 12456 36668899999999874
Q ss_pred C--ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 394 V--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 394 ~--~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
. ....+++.|+++||++.|++. +.+||+|++.+|+++|++++++|+++++++
T Consensus 418 ~~~~~~~~~~~l~~~Gv~~~~~g~-~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 418 DESIRNKLISIARNKGVMLGGCGD-KSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp SHHHHHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred ChhHHHHHHHHHHHCCeEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 2 356799999999999998765 789999999999999999999999998764
No 32
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=8.7e-53 Score=428.70 Aligned_cols=362 Identities=27% Similarity=0.464 Sum_probs=300.9
Q ss_pred CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC--CC
Q 013008 80 APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF--AD 156 (451)
Q Consensus 80 ~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~e 156 (451)
.|+++++++|+++||.+|++||||.++++++++||+||+|++|+.+++++...... .+..+...+++++|+++++ .+
T Consensus 32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 111 (449)
T 3a8u_X 32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLN 111 (449)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEE
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 48899999999999999999999999999999999999999999999987541112 4566778999999999984 78
Q ss_pred eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC---
Q 013008 157 RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG--- 233 (451)
Q Consensus 157 ~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 233 (451)
+|+|++||++|++.|+++++.++..++.+ ++++||+++++|||++..++..++.+.++..+.+..+++..++.+
T Consensus 112 ~v~~~~ggsea~~~al~~~~~~~~~~g~~---~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~ 188 (449)
T 3a8u_X 112 HVFFTDSGSECALTAVKMVRAYWRLKGQA---TKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLA 188 (449)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCT---TCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCG
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCC---CCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccc
Confidence 99999999999999999998877544332 478999999999999887777766444344444444555444321
Q ss_pred -------C--------HHHHHHhcCC---CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Q 013008 234 -------N--------IEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (451)
Q Consensus 234 -------d--------~~~le~~l~~---~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~ 295 (451)
| +++|+++++. +++++|++||+++++|.++++++++++|+++|++||++||+||||+|||++
T Consensus 189 ~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~ 268 (449)
T 3a8u_X 189 SNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRT 268 (449)
T ss_dssp GGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred cCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc
Confidence 5 8999999862 478999999999999988999999999999999999999999999999999
Q ss_pred cccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCC---------CccCCCCCcHHHHHHHHHHHHHhcCh
Q 013008 296 GYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG---------DHGSTFAGSPLVCNAAIAVLDKISNP 365 (451)
Q Consensus 296 G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~---------~~~~t~~~~~~~~aaa~aal~~~~~~ 365 (451)
|..+.++.+++.||++++||++++| +|+|++++++++++.+... .+.+|+++|+++++++.++|+.++++
T Consensus 269 g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~ 348 (449)
T 3a8u_X 269 GSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKE 348 (449)
T ss_dssp SSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred CcchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhc
Confidence 9877778889999999999999988 9999999999999888653 35678999999999999999987654
Q ss_pred HHHHH-----------HHh--CCCCcceecccceeEEEEecCC-------hHHHHHHHHHCCceeeecCCCCEEEEeCCC
Q 013008 366 AFLAS-----------KLA--RNPHVKDVRGLGLIIGIEFDVS-------ATPVVDACRDSGLLVLTAGKGNVVRLVPPL 425 (451)
Q Consensus 366 ~~~~~-----------~~~--~~~~~~~v~g~G~~~~~~~~~~-------~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~ 425 (451)
++.++ +.+ +++.+..+++.|.++++++... ..++.+.|+++||++.+++ +.+|++|++
T Consensus 349 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--~~iRis~~~ 426 (449)
T 3a8u_X 349 NLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG--DTLQFGPTF 426 (449)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET--TEEEECCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC--CEEEEECCC
Confidence 44443 222 2455555788899999998421 1268999999999999875 789999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 013008 426 IISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 426 ~~t~e~i~~~l~~l~~~l~~~ 446 (451)
.+|++++++++++|+++++++
T Consensus 427 ~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 427 NSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 33
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=5.6e-53 Score=430.64 Aligned_cols=378 Identities=22% Similarity=0.273 Sum_probs=290.4
Q ss_pred hhccccccchhhhccCCCCCCcchHHHHHHHHhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHH
Q 013008 39 AAASVNVEVNDAARGSAGGLGRNNKEVMEAEKKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDAD 118 (451)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~ 118 (451)
...|.++ ++++.+++|+|+++..+. |.++|+++++++|+++||.+|++||||.++.++.++||+||+
T Consensus 11 ~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~ 77 (453)
T 2cy8_A 11 TEGSVFW-AQRARSVMPDGVTADTRA------------FDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPR 77 (453)
T ss_dssp CHHHHHH-HHHHHHHSCCC------C------------CSSCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHH
T ss_pred CchhHHH-HHHHHhhcCCCCCccccc------------cCCCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHH
Confidence 3456677 888999999987665442 235799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEc
Q 013008 119 WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFT 197 (451)
Q Consensus 119 v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~ 197 (451)
|++|+.+++++..+ ..+..+.+.++++++++.+ +.++|+|++||+||++.|+++++.+++ +++||+++
T Consensus 78 v~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~---------~~~vi~~~ 146 (453)
T 2cy8_A 78 VNAAIAEALSHGVQ--YAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTG---------RRMILRFE 146 (453)
T ss_dssp HHHHHHHHHTTTCS--SCSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHC---------CCEEEEEC
T ss_pred HHHHHHHHHHhCCC--CCCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC---------CCEEEEEc
Confidence 99999999987432 2456777999999999888 588999999999999999999887763 67899999
Q ss_pred CCccCChhhhhhccCC----CCcCCCCc-CCCCCeeEeeCCCHHHHHHhcCC--CCeEEEEEccccCCCCccccCHHHHH
Q 013008 198 NSFHGRTMGALALTSK----EHYRSPFE-PVMPGVNFVEYGNIEATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQ 270 (451)
Q Consensus 198 ~~yhg~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~d~~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~ 270 (451)
|+|||++...+..++. +.. .+.. ...+++..++++|+++|+++++. +++++|++||+++++|.++++++|++
T Consensus 147 ~~yhg~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~ 225 (453)
T 2cy8_A 147 GHYHGWHDFSASGYNSHFDGQPA-PGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLR 225 (453)
T ss_dssp C-----------------------------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHH
T ss_pred CCcCCCchhhHhhcCCccCCCcC-CCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHH
Confidence 9999998776654432 110 0110 11134567788999999999973 47899999999988888889999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccC---C--CccCCC
Q 013008 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINY---G--DHGSTF 345 (451)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~---~--~~~~t~ 345 (451)
+|+++|++||++||+||+|+|| ++|..++++++++.||++++||++++|+|+|++++++++++.+.. . .+.+||
T Consensus 226 ~l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~ 304 (453)
T 2cy8_A 226 EGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTF 304 (453)
T ss_dssp HHHHHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------C
T ss_pred HHHHHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCC
Confidence 9999999999999999999999 888877788889999999999999999999999999999998875 1 356789
Q ss_pred CCcHHHHHHHHHHHHH-hcChHHHHH-----------H---HhCCCCcceecccceeEEEEecC-----C----------
Q 013008 346 AGSPLVCNAAIAVLDK-ISNPAFLAS-----------K---LARNPHVKDVRGLGLIIGIEFDV-----S---------- 395 (451)
Q Consensus 346 ~~~~~~~aaa~aal~~-~~~~~~~~~-----------~---~~~~~~~~~v~g~G~~~~~~~~~-----~---------- 395 (451)
++||++++++.++|+. + .+++.++ + ..+++....+++.|.++++++.. .
T Consensus 305 ~~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 383 (453)
T 2cy8_A 305 TGNPITAAAAIAAIDTIL-EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVA 383 (453)
T ss_dssp CCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSC
T ss_pred CCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccc
Confidence 9999999999999997 6 3433333 1 12245445578899999999853 1
Q ss_pred ------hHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 396 ------ATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 396 ------~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
..++++.|+++||++.|. . ++++++.++++++++++++|++++++++.
T Consensus 384 ~~~~~~~~~l~~~l~~~Gv~v~~~---~--~~~l~~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 384 RPDVKMIAAMRMALILEGVDIGGR---G--SVFLSAQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp CCCHHHHHHHHHHHHHTTEECBTT---T--EEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCCeEEeCC---C--CEEeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999653 2 34568999999999999999999987753
No 34
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.2e-52 Score=420.86 Aligned_cols=369 Identities=41% Similarity=0.689 Sum_probs=301.2
Q ss_pred hHHHHHHHHhc-ccccCCC--CceEEEeecccEEEecCCCEEEeeccCcccccCCCC-CHHHHHHHHHHHhhcccc-cCC
Q 013008 62 NKEVMEAEKKL-LVGTYNR--APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHG-DADWIKAVVDQANVLTHV-SNM 136 (451)
Q Consensus 62 ~~~~~~~~~~~-~~~~~~~--~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~-~~~ 136 (451)
.++++++..++ ..+.|.+ .|+++.+++|+++||.+|++||||.++.+++++||+ ||+|++|+.+++++..+. ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~ 82 (419)
T 2eo5_A 3 SRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAND 82 (419)
T ss_dssp HHHHHHHHHHHSCCCCCSSCCCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSC
T ss_pred hHHHHHHHHhhhccccccccCCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccc
Confidence 45566666666 6677776 799999999999999999999999999999999999 999999999999875432 234
Q ss_pred CCCHHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008 137 YYSIPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (451)
Q Consensus 137 ~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (451)
+.++...+++++|+++++ .++|+|++||+||++.|+++++.+ .+++||+++|+|||++..+..+++.
T Consensus 83 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~----------~~~~vi~~~p~yh~~~~~~~~~~~~ 152 (419)
T 2eo5_A 83 FYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT----------GRKYIIAFLGGFHGRTFGSISLTAS 152 (419)
T ss_dssp SCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTT----------SCCEEEEETTCCCCSSHHHHHHCCS
T ss_pred cCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHh----------hCCcEEEECCCcCCCCHhhHhhcCC
Confidence 566778999999999987 469999999999999999988754 2678999999999999888877665
Q ss_pred C-CcCCCCcCCCCCeeEeeCC---------------------CHHHHH-HhcCC----CCeEEEEEccccCCCCccccCH
Q 013008 214 E-HYRSPFEPVMPGVNFVEYG---------------------NIEATR-KLIQP----GKTAAVFVEPIQGEGGIYSATK 266 (451)
Q Consensus 214 ~-~~~~~~~~~~~~~~~~~~~---------------------d~~~le-~~l~~----~~~aavi~ep~~~~~G~~~~~~ 266 (451)
. .++..+.+...++..+|++ |+++|+ ++++. +++++|++||+++++|.+++++
T Consensus 153 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~ 232 (419)
T 2eo5_A 153 KAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPK 232 (419)
T ss_dssp CGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCT
T ss_pred ccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCH
Confidence 3 3333444444566666654 367888 88762 4789999999999889888999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCCCccCCC
Q 013008 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYGDHGSTF 345 (451)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~~~~~t~ 345 (451)
+++++|+++|++||++||+||+|++||++|..++.+.+++.||++||||++++| +|+|+++++++++ .+ ...+.+|+
T Consensus 233 ~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~~t~ 310 (419)
T 2eo5_A 233 NFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-PGMHSNTF 310 (419)
T ss_dssp THHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------CC
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-CcccCCCC
Confidence 999999999999999999999999999999877778889999999999999999 9999999999988 77 44677899
Q ss_pred CCcHHHHHHHHHHHHHhcChHHHHH-------HHhCCCC-cceecccceeEEEEec---CChHHHHHHHHHCCceeeecC
Q 013008 346 AGSPLVCNAAIAVLDKISNPAFLAS-------KLARNPH-VKDVRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTAG 414 (451)
Q Consensus 346 ~~~~~~~aaa~aal~~~~~~~~~~~-------~~~~~~~-~~~v~g~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~~ 414 (451)
++|+++++|+.++|+.+++ +.++ +.+.+.. +..+++.|.++++++. .... +++.|+++||++.+++
T Consensus 311 ~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~ 387 (419)
T 2eo5_A 311 GGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGLADDVRGIGLAWGLEYNEKKVRDR-IIGESFKRGLLLLPAG 387 (419)
T ss_dssp CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTSSSEEEEETTEEEEECSCHHHHHH-HHHHHHHTTEECEEET
T ss_pred CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhheEeeeEEEEEEEecCccHHH-HHHHHHHCCCEEecCC
Confidence 9999999999999987543 3332 2222221 4567888999999883 2245 8889999999999986
Q ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 415 KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 415 ~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
. +.+||+|++.+|++++++++++|+++++++
T Consensus 388 ~-~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 388 R-SAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred C-CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4 789999999999999999999999998764
No 35
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=1.2e-50 Score=410.47 Aligned_cols=372 Identities=32% Similarity=0.527 Sum_probs=300.2
Q ss_pred HhcccccCC----CCceE-EEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCHHHH
Q 013008 70 KKLLVGTYN----RAPVV-LASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSIPQI 143 (451)
Q Consensus 70 ~~~~~~~~~----~~p~~-~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~ 143 (451)
.++.++.+. +.|++ +.+++|+++||.+|++|||+.++.+++++||+||+|++|+.+++++..+.+ ..+.++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~ 89 (429)
T 1s0a_A 10 QRHILHPFTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAI 89 (429)
T ss_dssp HHHBCCTTCCSSSCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHH
T ss_pred HHhhccccccccccCCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHH
Confidence 344454433 34665 899999999999999999999999999999999999999999998754322 234566688
Q ss_pred HHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC-cCCCC
Q 013008 144 ELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH-YRSPF 220 (451)
Q Consensus 144 ~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~-~~~~~ 220 (451)
+++++++++++ .++|+|++||+||++.++++++.+++.++. ++++||+++|+||++...++.+++... ++..+
T Consensus 90 ~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~----~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~ 165 (429)
T 1s0a_A 90 ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE----ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLW 165 (429)
T ss_dssp HHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC----CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGG
T ss_pred HHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCC----CCCeEEEECCCCCCCchhhhhhcCCchhhcccc
Confidence 99999999984 889999999999999999988876642221 378999999999999887776654321 12222
Q ss_pred cCCCCCeeEee-----------CCCHHHHHHhcCC--CCeEEEEEccc-cCCCCccccCHHHHHHHHHHHHHhCCEEEEe
Q 013008 221 EPVMPGVNFVE-----------YGNIEATRKLIQP--GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFD 286 (451)
Q Consensus 221 ~~~~~~~~~~~-----------~~d~~~le~~l~~--~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D 286 (451)
.+..+++..++ ..|+++|+++++. +++++|++||+ ++++|.++++++++++|+++|++||++||+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~D 245 (429)
T 1s0a_A 166 KGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIAD 245 (429)
T ss_dssp TTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEE
T ss_pred cCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 22223333332 2478999998862 57899999999 8889988999999999999999999999999
Q ss_pred ccccCCCcccccccccccCCCcceeeecccccCC-cccccccccHHHHhhccCC-----CccCCCCCcHHHHHHHHHHHH
Q 013008 287 EVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG-LPIGAALVTEKVASAINYG-----DHGSTFAGSPLVCNAAIAVLD 360 (451)
Q Consensus 287 Ev~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G-~~iG~v~~~~~i~~~~~~~-----~~~~t~~~~~~~~aaa~aal~ 360 (451)
|+|+|||++|..++++.+++.||+++|||++++| +|+|++++++++++.+... .+.+|+++|+++++++.++|+
T Consensus 246 e~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~ 325 (429)
T 1s0a_A 246 EIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA 325 (429)
T ss_dssp CTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHH
T ss_pred ehhhCCcccchHHHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHH
Confidence 9999999998877777888999999999999999 9999999999999888653 256799999999999999999
Q ss_pred HhcChHHHHH----------HHhC---CCCcceecccceeEEEEec--CChHHHHHHHHHCCceeeecCCCCEEEEeCCC
Q 013008 361 KISNPAFLAS----------KLAR---NPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPL 425 (451)
Q Consensus 361 ~~~~~~~~~~----------~~~~---~~~~~~v~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~ 425 (451)
.++++++.++ .++. +|.+..+++.|.++++++. .+..++.+.|+++||++.+.+ +.+|++|++
T Consensus 326 ~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~--~~iRis~~~ 403 (429)
T 1s0a_A 326 ILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFG--KLIYLMPPY 403 (429)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBCHHHHHHHHHHTTEECCCBT--TEEEECCCT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEeeEEEEEEECCcccHHHHHHHHHHCCCEEeccC--CEEEEECCC
Confidence 8766555444 1222 3555557788999999885 357789999999999998863 789999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q 013008 426 IISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 426 ~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
.+|+|++++++++|++++++++
T Consensus 404 ~~t~e~i~~~~~~l~~~~~~~~ 425 (429)
T 1s0a_A 404 IILPQQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp TCCHHHHHHHHHHHHHHTSSGG
T ss_pred CCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999886654
No 36
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=1e-49 Score=402.86 Aligned_cols=376 Identities=35% Similarity=0.592 Sum_probs=306.5
Q ss_pred HHHHHHHHhcccccCCC-CceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc-CCCCCH
Q 013008 63 KEVMEAEKKLLVGTYNR-APVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS-NMYYSI 140 (451)
Q Consensus 63 ~~~~~~~~~~~~~~~~~-~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~ 140 (451)
+++.++..++..+.+.. .|+++.+++|+++||.+|++||||.++.++.++||+||+|.+++.+++++..+.+ ..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~ 84 (426)
T 1sff_A 5 KELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYE 84 (426)
T ss_dssp HHHHHHHHHHSCTTBCCSEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECH
T ss_pred HHHHHHHHHhcCccccccCCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCH
Confidence 44555556666665554 5889999999999999999999999999988999999999999999998754432 334567
Q ss_pred HHHHHHHHHhhcc-C-C-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC-Cc
Q 013008 141 PQIELAKRLVACS-F-A-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HY 216 (451)
Q Consensus 141 ~~~~l~~~l~~~~-~-~-e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~ 216 (451)
...+|+++|++++ + . ++|++++||++|++.++++++.+++ +++||+++|+||++...++.+++.. .+
T Consensus 85 ~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~---------~~~vi~~~p~y~~~~~~~~~~~g~~~~~ 155 (426)
T 1sff_A 85 PYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATK---------RSGTIAFSGAYHGRTHYTLALTGKVNPY 155 (426)
T ss_dssp HHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHT---------CCEEEEETTCCCCSSHHHHHHSSCCTTT
T ss_pred HHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhC---------CCeEEEECCCcCCCchHhhhhcCCcccc
Confidence 7899999999998 5 4 8999999999999999998776653 3489999999999987776665432 22
Q ss_pred CCCCcCCCCCeeEeeCC----------CHHHHHHhcCC----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCE
Q 013008 217 RSPFEPVMPGVNFVEYG----------NIEATRKLIQP----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGAL 282 (451)
Q Consensus 217 ~~~~~~~~~~~~~~~~~----------d~~~le~~l~~----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l 282 (451)
+..+.+...++..++.+ |+++|+++++. .++++|+++|+++++|.++++++++++|+++|++||++
T Consensus 156 ~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~ 235 (426)
T 1sff_A 156 SAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIM 235 (426)
T ss_dssp TTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCE
T ss_pred ccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 33344444456555542 68899988862 47899999999888887899999999999999999999
Q ss_pred EEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh
Q 013008 283 LVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362 (451)
Q Consensus 283 lI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~ 362 (451)
||+||+|+||++.|..++++.+++.||+++|||++++|+|+|++++++++++.+....+..|++.|+++++++.++|+.+
T Consensus 236 li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~ 315 (426)
T 1sff_A 236 LIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVF 315 (426)
T ss_dssp EEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHH
T ss_pred EEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999988877777888899999999999999999999999999998876567788999999999999999877
Q ss_pred cChHHHHH-----------H---HhCCCCcceecccceeEEEEecC----------ChHHHHHHHHHCCceeeecCC-CC
Q 013008 363 SNPAFLAS-----------K---LARNPHVKDVRGLGLIIGIEFDV----------SATPVVDACRDSGLLVLTAGK-GN 417 (451)
Q Consensus 363 ~~~~~~~~-----------~---~~~~~~~~~v~g~G~~~~~~~~~----------~~~~~~~~l~~~Gv~~~~~~~-~~ 417 (451)
+++++.++ + ...++.+..+++.|.++++++.. ...++++.|+++||++.|+.. .+
T Consensus 316 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~ 395 (426)
T 1sff_A 316 EQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYN 395 (426)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSC
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCCCC
Confidence 54444333 1 12355555567789999999831 246788999999999998763 47
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 418 VVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 418 ~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
.+|+++++.++++++++++++|++++++++
T Consensus 396 ~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~ 425 (426)
T 1sff_A 396 VLRILVPLTIEDAQIRQGLEIISQCFDEAK 425 (426)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999998765
No 37
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=2.6e-48 Score=389.15 Aligned_cols=363 Identities=49% Similarity=0.854 Sum_probs=300.3
Q ss_pred cCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC
Q 013008 76 TYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA 155 (451)
Q Consensus 76 ~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 155 (451)
.+...|+.+.+++|+++||.+|++||||.++.++.++||++|++.+++.+++++..+.+..+..+...+++++|+++++.
T Consensus 18 ~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~ 97 (397)
T 2ord_A 18 TYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFG 97 (397)
T ss_dssp CCCCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTTS
T ss_pred cccCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcCC
Confidence 45567999999999999999999999999998888999999999999999998765443334456789999999999999
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCH
Q 013008 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI 235 (451)
Q Consensus 156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (451)
+++++++||++|++.++++++.+..... +++++||+++++||+....++...+...+..++.|...++..++++|+
T Consensus 98 ~~v~~~~gg~~a~~~al~~~~~~~~~~~----~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~ 173 (397)
T 2ord_A 98 GKVFFANTGTEANEAAIKIARKYGKKKS----EKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNV 173 (397)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHC----TTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCH
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCC----CCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCH
Confidence 9999999999999999998875421100 035789999999999987666655543223334455667888888999
Q ss_pred HHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecc
Q 013008 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAK 315 (451)
Q Consensus 236 ~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK 315 (451)
++|++++++ ++++|+++|+++++|.++++.+++++|+++|++||++||+||+|+||++.|..+....+++.||+++|||
T Consensus 174 ~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~sK 252 (397)
T 2ord_A 174 EDLRRKMSE-DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAK 252 (397)
T ss_dssp HHHHHHCCT-TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECG
T ss_pred HHHHHHhhc-CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeeeecc
Confidence 999999974 7899999999999888688999999999999999999999999999988887666667788899999999
Q ss_pred cccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------HHh---CCCCccee
Q 013008 316 PLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------KLA---RNPHVKDV 381 (451)
Q Consensus 316 ~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~~~---~~~~~~~v 381 (451)
++++|+|+|+++++++++ .+....+..+++.|+++++++.++|+.+.++++.++ +.+ +++.+..+
T Consensus 253 ~~~~G~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 331 (397)
T 2ord_A 253 GLGGGVPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADV 331 (397)
T ss_dssp GGGTTSCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred ccCCCcCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 999999999999998887 776555678899999999999999998765443333 211 24544446
Q ss_pred cccceeEEEEecC--ChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 382 RGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 382 ~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
++.|.++++.+.. ...++.+.|+++||++.+++. +.+|+++++.++++++++++++|++++++
T Consensus 332 ~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 332 RGMGLMIGIQFREEVSNREVATKCFENKLLVVPAGN-NTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp EEETTEEEEEECTTSCHHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEeEEEEEEECChHHHHHHHHHHHHCCCEEccCCC-CEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 7788999998843 478899999999999999865 78999999999999999999999998864
No 38
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=1.2e-47 Score=383.93 Aligned_cols=368 Identities=40% Similarity=0.716 Sum_probs=301.8
Q ss_pred HHHHHHhccc---ccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH
Q 013008 65 VMEAEKKLLV---GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP 141 (451)
Q Consensus 65 ~~~~~~~~~~---~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~ 141 (451)
+.+.+.+|.+ ..|.+.|+++.+++|+++||.+|++||||.++.+++++||.+|++.+++.+++++..+.+..+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~ 88 (395)
T 1vef_A 9 WRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPM 88 (395)
T ss_dssp CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHH
T ss_pred HHHHHHhhhhhcccccCCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCCHH
Confidence 3344444443 6677889999999999999999999999999988889999999999999999987654333345677
Q ss_pred HHHHHHHHhhcc--CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008 142 QIELAKRLVACS--FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (451)
Q Consensus 142 ~~~l~~~l~~~~--~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (451)
..++++++++++ +.+++++++||++|++.++++++.++ ++++||+++++||+....++...+.......
T Consensus 89 ~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~---------~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~ 159 (395)
T 1vef_A 89 RGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT---------GRKKFVAAMRGFSGRTMGSLSVTWEPKYREP 159 (395)
T ss_dssp HHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH---------SCCEEEEETTCCCCSSHHHHHTCCCHHHHGG
T ss_pred HHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHh---------CCCeEEEEcCCcCCCchhhhhhcCCcccccc
Confidence 899999999999 57899999999999999999876444 4788999999999988766665543322222
Q ss_pred CcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc
Q 013008 220 FEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW 299 (451)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~ 299 (451)
+.|...++..++++|+++|++++++ ++++|+++|+++++|.+.++++++++|+++|++||++||+||+|+||++.|..+
T Consensus 160 ~~p~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~ 238 (395)
T 1vef_A 160 FLPLVEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF 238 (395)
T ss_dssp GCSCSSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred cCCCCCCeeEeCCCcHHHHHHHhcc-CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchh
Confidence 3355556777788899999999974 689999999998889888899999999999999999999999999998888766
Q ss_pred cccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---------
Q 013008 300 AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------- 370 (451)
Q Consensus 300 ~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------- 370 (451)
..+..++.+|+++|||++++|+|+|++++++++++.+....+..+++.|+++++++.++|+.+.++++.++
T Consensus 239 ~~~~~~~~~d~~s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~ 318 (395)
T 1vef_A 239 AFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFM 318 (395)
T ss_dssp THHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HhhhcCCCCCEEEEcccccCCCceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777888999999999999999999999999998887655677889999999999999987653322222
Q ss_pred -HHhCCC--CcceecccceeEEEEecCChHHHHHHHH-HCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 371 -KLARNP--HVKDVRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 371 -~~~~~~--~~~~v~g~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
.++.++ .+..+++.|.++++.+.....++.+.|+ ++||.+.+++. +.+|+++++.++++++++++++|++++
T Consensus 319 ~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~-~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 319 EKLRAIPSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGP-TVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp HHHHTSCCTTEEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESST-TEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCceEEEEEEEEEEEEEEcChHHHHHHHHHHHCCeEEecCCC-CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 223332 2334567788999988545778999999 99999998765 789999999999999999999999876
No 39
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=2.6e-46 Score=371.36 Aligned_cols=361 Identities=43% Similarity=0.764 Sum_probs=297.2
Q ss_pred cccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc
Q 013008 74 VGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS 153 (451)
Q Consensus 74 ~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 153 (451)
.+.+.+.|+.+.+++|.++||.+|+.||||.++.+++.+||.+|++.+++.+++++..+....++.....+++++|++++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~ 83 (375)
T 2eh6_A 4 MNNYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHF 83 (375)
T ss_dssp CSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTS
T ss_pred cccCcCCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhc
Confidence 44566789999999999999999999999999998888999999999999999987543333345666889999999999
Q ss_pred CC-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008 154 FA-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232 (451)
Q Consensus 154 ~~-e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (451)
+. +++++++||++|++.++++++.++.. +. +++++||+.+|+||++...+...++...+...+.+..+++..+++
T Consensus 84 g~~~~v~~~~g~t~a~~~~~~~~~~~~~~-~~---~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (375)
T 2eh6_A 84 WTEGKVFFANSGTESVEAAIKLARKYWRD-KG---KNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL 159 (375)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHHHHHH-TT---CCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT
T ss_pred CCCCeEEEeCchHHHHHHHHHHHHHHhcc-CC---CCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC
Confidence 86 99999999999999999987655410 00 124899999999999988776666554333344455567788888
Q ss_pred CCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee
Q 013008 233 GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT 312 (451)
Q Consensus 233 ~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t 312 (451)
+|+++|++++++ ++++|+++|+++++|.+.++++++++|.++|++||++||+||+|++||+.+..+..+.++..+|+++
T Consensus 160 ~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s 238 (375)
T 2eh6_A 160 NDIDSVYKLLDE-ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIA 238 (375)
T ss_dssp TCHHHHHTTCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE
T ss_pred chHHHHHHHhcC-CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEE
Confidence 899999999974 7899999999999898888999999999999999999999999999988876555667788899999
Q ss_pred ecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceec
Q 013008 313 LAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVR 382 (451)
Q Consensus 313 ~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~ 382 (451)
|||.+++|+|+|++++++++++.+....+..+++.+++.++++.++|+.+. ++.++ .+++++. ..++
T Consensus 239 ~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~-~~~~ 315 (375)
T 2eh6_A 239 LAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKELGK-GKVK 315 (375)
T ss_dssp ECGGGGTTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTS-SEEE
T ss_pred EcccccCCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc-CCce
Confidence 999999899999999999999988765567788899999999999998764 22222 2233432 3456
Q ss_pred ccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 383 GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 383 g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
+.|.++++++..+..++++.|+++||.+.+++. +.+|+++++.++++++++++++|++++
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~-~~iRi~~~~~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 316 GRGLMLGLELERECKDYVLKALEKGLLINCTAG-KVLRFLPPLIIQKEHIDRAISVLREIL 375 (375)
T ss_dssp EETTEEEEECSSCCHHHHHHHHHTTEECEEETT-TEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEEEcCcHHHHHHHHHHCCCEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 778999998865577899999999999998765 789999999999999999999998753
No 40
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=1.6e-39 Score=327.97 Aligned_cols=343 Identities=11% Similarity=0.092 Sum_probs=258.4
Q ss_pred cCCCCceEEEeecccEEEecC--CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc
Q 013008 76 TYNRAPVVLASGKGCKLYDAE--GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS 153 (451)
Q Consensus 76 ~~~~~p~~~~~~~G~~l~d~~--G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 153 (451)
.|...+++..+++|+++||.+ |++||||..+.. .+ +.+|+|++|+.+++++..+.+.....+...++++++.+.+
T Consensus 37 ~y~~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~ 113 (421)
T 3l8a_A 37 RYDFTTRPDRLNQFTYKWKTSENNPELLQMWVADM--DF-LPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEH 113 (421)
T ss_dssp -CCCSCCCCCTTTTBTTTGGGTTCTTCEECCSSCC--CS-CCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHH
T ss_pred hccCCcccccCCCCCccccccCCCCCeeecccCCC--CC-CCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHh
Confidence 456667888999999999999 899999987743 34 5899999999999987544433334455778888888776
Q ss_pred C----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC--CCe
Q 013008 154 F----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGV 227 (451)
Q Consensus 154 ~----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~ 227 (451)
+ .++|+|++||++|++.+++++. .++++||+++|+||++.......+.... . .+.. .+.
T Consensus 114 g~~~~~~~v~~~~g~~ea~~~a~~~~~-----------~~gd~Vi~~~~~y~~~~~~~~~~g~~~~-~---~~~~~~~~~ 178 (421)
T 3l8a_A 114 DYAVVKEDILFIDGVVPAISIALQAFS-----------EKGDAVLINSPVYYPFARTIRLNDHRLV-E---NSLQIINGR 178 (421)
T ss_dssp CCCCCGGGEEEESCHHHHHHHHHHHHS-----------CTEEEEEEEESCCHHHHHHHHHTTEEEE-E---EECEEETTE
T ss_pred CCCCCHHHEEEcCCHHHHHHHHHHHhc-----------CCCCEEEECCCCcHHHHHHHHHCCCEEE-e---ccccccCCC
Confidence 5 6789999999999999999764 1578999999999998765544322111 1 1110 110
Q ss_pred eEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cc-----
Q 013008 228 NFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AH----- 301 (451)
Q Consensus 228 ~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~----- 301 (451)
.. .|+++|+++++..++++|+++++++++| .+++++++++|+++|++||++||+||+|++|+++|..+ .+
T Consensus 179 ~~---~d~~~le~~i~~~~~~~vil~~p~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 254 (421)
T 3l8a_A 179 FE---IDFEQLEKDIIDNNVKIYLLCSPHNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDA 254 (421)
T ss_dssp EE---CCHHHHHHHHHHTTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCT
T ss_pred ee---eCHHHHHHHhhccCCeEEEECCCCCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCc
Confidence 00 2899999999744788999998888888 57889999999999999999999999999998887521 11
Q ss_pred cccCCCcceeeeccccc-CCccccccccc-HHHHhhccCCC-ccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------
Q 013008 302 EHYGIFPDIMTLAKPLA-GGLPIGAALVT-EKVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------- 370 (451)
Q Consensus 302 ~~~~~~pdi~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------- 370 (451)
+..+..+++.++||+++ +|+|+|+++++ +++++.+.... ...++++|+++++++.++++. .++++++
T Consensus 255 ~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~--~~~~~~~~~~~~~~~ 332 (421)
T 3l8a_A 255 SYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQY--GKPWLEELKTVIEGN 332 (421)
T ss_dssp TGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHH
T ss_pred hhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhc--cHHHHHHHHHHHHHH
Confidence 22355677889999998 78999999998 89998886543 334568899999999999984 2333322
Q ss_pred ------HHhCCCCcceecccceeEE-EEec---CChHHHHHHHHH-CCceeeecC-----CCCEEEEeCCCCCCHHHHHH
Q 013008 371 ------KLARNPHVKDVRGLGLIIG-IEFD---VSATPVVDACRD-SGLLVLTAG-----KGNVVRLVPPLIISEQELDQ 434 (451)
Q Consensus 371 ------~~~~~~~~~~v~g~G~~~~-~~~~---~~~~~~~~~l~~-~Gv~~~~~~-----~~~~iri~~~~~~t~e~i~~ 434 (451)
.++++|.+..+++.|.++. +++. .+..++.+.|++ +||++.++. ..+++||+++ +++++|++
T Consensus 333 ~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~ 410 (421)
T 3l8a_A 333 IKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQE 410 (421)
T ss_dssp HHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHH
T ss_pred HHHHHHHHHhCCCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHH
Confidence 2233366666777776655 7774 256789999985 599998752 1378999877 69999999
Q ss_pred HHHHHHHHHH
Q 013008 435 AVEILCKTLP 444 (451)
Q Consensus 435 ~l~~l~~~l~ 444 (451)
++++|+++++
T Consensus 411 ~l~~l~~~l~ 420 (421)
T 3l8a_A 411 ALSRIISVFG 420 (421)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 41
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=9.7e-37 Score=308.30 Aligned_cols=352 Identities=15% Similarity=0.072 Sum_probs=262.2
Q ss_pred chHHHHHHHHhccccc-CCCCceEEE-eecccEEEecCCCEEEeeccCcccccCC-CCCHHHHHHHHHHHhhcccccC--
Q 013008 61 NNKEVMEAEKKLLVGT-YNRAPVVLA-SGKGCKLYDAEGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLTHVSN-- 135 (451)
Q Consensus 61 ~~~~~~~~~~~~~~~~-~~~~p~~~~-~~~G~~l~d~~G~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~-- 135 (451)
..+.+.++..+....+ ..+.+..+. +++|+++|| ||++||||.+|.+ +| +.||++.+++.++++++...+.
T Consensus 26 ~~~~~~~~~~~~~~~g~~~r~~~~~~~~~~g~~~~~-~g~~~id~~~~~~---lg~~~~~~v~~a~~~~~~~~~~~~~~~ 101 (427)
T 2w8t_A 26 KFDGLIAERQKLLDSGVTDPFAIVMEQVKSPTEAVI-RGKDTILLGTYNY---MGMTFDPDVIAAGKEALEKFGSGTCGS 101 (427)
T ss_dssp GGHHHHHHHHHHHHTTCCCTTCCCCSEEEETTEEEE-TTEEEEECSCCCT---TCGGGCHHHHHHHHHHHHHHCSCCCSC
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeccccCCCceEee-CCceEEEEECccc---ccCCCCHHHHHHHHHHHHHhCCCCccc
Confidence 3344444444333333 334455677 999999999 9999999999853 88 6899999999999987442211
Q ss_pred ---CCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008 136 ---MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (451)
Q Consensus 136 ---~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (451)
.+..+...+|+++|+++++.+.+++++||++|+..+++++. + +++.|++..+. |+.....+...+
T Consensus 102 ~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~---~--------~gd~vl~~~~~-h~~~~~~~~~~g 169 (427)
T 2w8t_A 102 RMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLA---G--------KGEYVILDADS-HASIYDGCQQGN 169 (427)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHS---C--------TTCEEEEETTC-CHHHHHHHHHSC
T ss_pred ccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhc---C--------CCCEEEECCcc-cHHHHHHHHHcC
Confidence 12356689999999999998889999999999999988653 2 46777776665 455544444332
Q ss_pred CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC---CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc
Q 013008 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG---KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ 289 (451)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (451)
..+..++++|+++|+++++.. ++++|+++++++++|.+.+ +++|+++|++||++||+||+|
T Consensus 170 ------------~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~ 233 (427)
T 2w8t_A 170 ------------AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAH 233 (427)
T ss_dssp ------------SEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTT
T ss_pred ------------CeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEECCc
Confidence 234456778999999999642 6899999999999998776 999999999999999999999
Q ss_pred cCC--CcccccccccccCCCcc----eeeecccccCCcccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHHHHHH
Q 013008 290 CGL--GRTGYLWAHEHYGIFPD----IMTLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDK 361 (451)
Q Consensus 290 tg~--gr~G~~~~~~~~~~~pd----i~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~aal~~ 361 (451)
+++ +++|.+ ..+.+++.+| +.++||++| ++.|++++++++++.+.... ...+++.+++.++++.++|+.
T Consensus 234 ~~~~~~~~g~~-~~~~~~~~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~ 310 (427)
T 2w8t_A 234 SMGFFGPNGRG-VYEAQGLEGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRK 310 (427)
T ss_dssp TTTTSSTTSCC-HHHHTTCTTCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHH
T ss_pred cccccCCCCCc-hHhhcCCCcCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHH
Confidence 874 333443 3455677666 678999996 46699999999999886542 234667899999999999998
Q ss_pred hcC-hHHHHH----------HHhCCCCccee-cc-cceeEEEEecC--ChHHHHHHHHHCCceeeecCC------CCEEE
Q 013008 362 ISN-PAFLAS----------KLARNPHVKDV-RG-LGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVR 420 (451)
Q Consensus 362 ~~~-~~~~~~----------~~~~~~~~~~v-~g-~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~------~~~ir 420 (451)
++. ++..++ .++.+. +... .+ .|.++++.+.. ...++.+.|+++||++.++.. .+.+|
T Consensus 311 ~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lR 389 (427)
T 2w8t_A 311 LMTAHEKRERLWSNARALHGGLKAMG-FRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLR 389 (427)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHT-CEESCSSCCSSEEEEEESSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHcC-CcccCCCCCCCEEEEEECCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEE
Confidence 765 443333 122222 2222 34 67888888842 466799999999999987632 15799
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 421 LVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 421 i~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
++++..++++++++++++|+++++++..
T Consensus 390 i~~~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 390 CSICAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999987653
No 42
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=4.6e-35 Score=292.53 Aligned_cols=338 Identities=17% Similarity=0.200 Sum_probs=255.3
Q ss_pred ccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCC-CCCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHH
Q 013008 75 GTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKR 148 (451)
Q Consensus 75 ~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~ 148 (451)
.++.+.|..+++++|.+++| +|++||||.++ .++| |++|++.+++.++++++.+.+. ....+...+++++
T Consensus 21 ~~~~~~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 96 (399)
T 3tqx_A 21 AGLYKSERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKD 96 (399)
T ss_dssp TTCCCCCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHH
T ss_pred cCCccccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHH
Confidence 33445677889999999999 99999999998 3588 6899999999999987543221 1234558899999
Q ss_pred HhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCee
Q 013008 149 LVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVN 228 (451)
Q Consensus 149 l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (451)
++++++.+..+++++|++|+..+++++. .+++.|++.+|.|++.. ......+ ..+.
T Consensus 97 la~~~~~~~~i~~~sGt~a~~~~l~~~~-----------~~gd~v~~~~~~~~~~~-~~~~~~g------------~~~~ 152 (399)
T 3tqx_A 97 ISEFLGTDDTILYSSCFDANGGLFETLL-----------GPEDAIISDELNHASII-DGIRLCK------------AQRY 152 (399)
T ss_dssp HHHHHTCSEEEEESCHHHHHHTTHHHHC-----------CTTCEEEEETTCCHHHH-HHHHSCC------------SEEE
T ss_pred HHHHHCCCcEEEECchHHHHHHHHHHhc-----------CCCCEEEECCcccHHHH-HHHHHcC------------Ccee
Confidence 9999997778888899999999988654 15788888888775543 3333322 2344
Q ss_pred EeeCCCHHHHHHhcCC-----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc-cCC-Ccccccccc
Q 013008 229 FVEYGNIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ-CGL-GRTGYLWAH 301 (451)
Q Consensus 229 ~~~~~d~~~le~~l~~-----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~-gr~G~~~~~ 301 (451)
.++.+|+++|+++++. .++++|+++++++++|.+.+ +++|.++|++||+++|+||+| .|+ +..+.. ..
T Consensus 153 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~ 227 (399)
T 3tqx_A 153 RYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRG-TP 227 (399)
T ss_dssp EECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC-HH
T ss_pred EeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCc-hH
Confidence 5666788999998863 27899999999999998776 999999999999999999999 453 444433 45
Q ss_pred cccCC--Cccee--eecccccCCcccccccccHHHHhhccCCCc--cCCCCCcHHHHHHHHHHHHHh-cC-hHHHHH---
Q 013008 302 EHYGI--FPDIM--TLAKPLAGGLPIGAALVTEKVASAINYGDH--GSTFAGSPLVCNAAIAVLDKI-SN-PAFLAS--- 370 (451)
Q Consensus 302 ~~~~~--~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~--~~t~~~~~~~~aaa~aal~~~-~~-~~~~~~--- 370 (451)
+.+++ .+|++ ++||+++ |++.|++++++++++.+..... ..+.+.+++.++++.++++.+ +. ++..++
T Consensus 228 ~~~~~~~~~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 306 (399)
T 3tqx_A 228 EYCGVADRVDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQE 306 (399)
T ss_dssp HHHTCTTCCSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HhhCCCCCCcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 55666 77887 8999998 6788999999999988764322 234467899999999999876 22 222222
Q ss_pred -------HHhCCCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHH
Q 013008 371 -------KLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQA 435 (451)
Q Consensus 371 -------~~~~~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~ 435 (451)
.++++ .+..+++.|.++++.+.. ...++++.|+++||.+.++.. .+.+|++++..+++++++++
T Consensus 307 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~ 385 (399)
T 3tqx_A 307 NSRYFRAGMEKL-GFQLVPGNHPIIPVMLGDAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRA 385 (399)
T ss_dssp HHHHHHHHHHHH-TCCBCCCSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCcCCCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHH
Confidence 12222 233346778888888742 467899999999999986532 25899999999999999999
Q ss_pred HHHHHHHHHHHh
Q 013008 436 VEILCKTLPVLD 447 (451)
Q Consensus 436 l~~l~~~l~~~~ 447 (451)
+++|+++++++.
T Consensus 386 ~~~l~~~~~~~~ 397 (399)
T 3tqx_A 386 IEAFGQVGKKLG 397 (399)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999999998753
No 43
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=3.1e-34 Score=287.12 Aligned_cols=340 Identities=15% Similarity=0.165 Sum_probs=254.3
Q ss_pred CCCCceEEEeecccEEEecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC--CC---CCHHHHHHHHHHh
Q 013008 77 YNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN--MY---YSIPQIELAKRLV 150 (451)
Q Consensus 77 ~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~--~~---~~~~~~~l~~~l~ 150 (451)
+.+.|..+.+++|+++||.+|++||||.++. ++|+ ++|++.+++.++++++...+. .+ ......+++++++
T Consensus 24 ~~~~~~~~~~~~g~~~~~~~g~~~id~~~~~---~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la 100 (401)
T 1fc4_A 24 LFKEERIITSAQQADITVADGSHVINFCANN---YLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLA 100 (401)
T ss_dssp CCCCCCCBCSCSSSEEEBTTSCEEEECCCSC---TTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHH
T ss_pred CeeeeeeeccCCCceEEeeCCccEEEeeccC---cccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHH
Confidence 4467889999999999999999999999983 4997 899999999999887543211 11 1456889999999
Q ss_pred hccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEe
Q 013008 151 ACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFV 230 (451)
Q Consensus 151 ~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (451)
++++.+..+++++|++|+..+++++. + +++.|++.++.| +.....+...+ ..+..+
T Consensus 101 ~~~g~~~~i~~~sGs~a~~~~~~~~~---~--------~gd~v~~~~~~~-~~~~~~~~~~g------------~~~~~~ 156 (401)
T 1fc4_A 101 AFLGMEDAILYSSCFDANGGLFETLL---G--------AEDAIISDALNH-ASIIDGVRLCK------------AKRYRY 156 (401)
T ss_dssp HHHTCSEEEEESCHHHHHHTTHHHHC---C--------TTCEEEEETTCC-HHHHHHHHTSC------------SEEEEE
T ss_pred HHhCCCcEEEeCChHHHHHHHHHHHc---C--------CCCEEEEcchhH-HHHHHHHHHcC------------CceEEE
Confidence 99986677888899999999988653 1 577788777765 43333333222 223455
Q ss_pred eCCCHHHHHHhcCC--C---CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CC-Ccccccccccc
Q 013008 231 EYGNIEATRKLIQP--G---KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GL-GRTGYLWAHEH 303 (451)
Q Consensus 231 ~~~d~~~le~~l~~--~---~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~-gr~G~~~~~~~ 303 (451)
+..|+++|+++++. . ++++|+++++++++|.+.+ +++|+++|++||+++|+||+|. |+ ++.|..+ .+.
T Consensus 157 ~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~ 231 (401)
T 1fc4_A 157 ANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEY 231 (401)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHH
T ss_pred CCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHH
Confidence 66799999998863 1 5789999998888888766 9999999999999999999994 87 3455542 333
Q ss_pred cCCC--ccee--eecccccCCcccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHHHHHHhcC-hHHHHH------
Q 013008 304 YGIF--PDIM--TLAKPLAGGLPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISN-PAFLAS------ 370 (451)
Q Consensus 304 ~~~~--pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~------ 370 (451)
.++. .|++ ++||.++++. .|++++++++++.+.... ...+++.++++++++.++|+.+.. ++..++
T Consensus 232 ~~~~~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 310 (401)
T 1fc4_A 232 CDVMGRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANAR 310 (401)
T ss_dssp TTCTTCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCCCcCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4544 3666 8999996654 599999999998876432 233668899999999999987643 333332
Q ss_pred ----HHhCCCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHH
Q 013008 371 ----KLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEI 438 (451)
Q Consensus 371 ----~~~~~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~ 438 (451)
.++++. +..+.+.|.++++.+.. ...++.+.|.++||.+.++.. .+.+|++++..++++++++++++
T Consensus 311 ~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 389 (401)
T 1fc4_A 311 QFREQMSAAG-FTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEA 389 (401)
T ss_dssp HHHHHHHHTT-CCBCCSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcC-CcccCCCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHH
Confidence 222232 22235678898988842 466789999999999987642 24799999988999999999999
Q ss_pred HHHHHHHHhhcC
Q 013008 439 LCKTLPVLDSNS 450 (451)
Q Consensus 439 l~~~l~~~~~~~ 450 (451)
|++++++++-.|
T Consensus 390 l~~~~~~~~~~~ 401 (401)
T 1fc4_A 390 FTRIGKQLGVIA 401 (401)
T ss_dssp HHHHHHHTTSCC
T ss_pred HHHHHHHhCCCC
Confidence 999998876544
No 44
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=2.1e-34 Score=286.93 Aligned_cols=340 Identities=12% Similarity=0.067 Sum_probs=249.9
Q ss_pred eEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC----CCe
Q 013008 82 VVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----ADR 157 (451)
Q Consensus 82 ~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~e~ 157 (451)
++..+++|+++||.+|++||||..+.. .+ +.+|+|.+++.+++++..+.+.....+.+.++++++.+.++ .++
T Consensus 11 ~~~~~~~g~~~~d~~g~~~i~~~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~ 87 (391)
T 3dzz_A 11 HVPKRQGNSIKWGVLKEKELPMWIAEM--DF-KIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW 87 (391)
T ss_dssp SCCCCCTTBTTTTTCCTTCEECCSSCC--SS-CCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred hhccCCCCccceeccCCCceeccccCC--CC-CCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 566789999999999999999998743 34 48999999999998864333332334457788888887765 679
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC--CCeeEeeCCCH
Q 013008 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNI 235 (451)
Q Consensus 158 v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~ 235 (451)
|++++||++|+..+++++. .++++|++.+|+||++.......+.... . .+.. .+... .|+
T Consensus 88 i~~~~g~~~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-~---~~~~~~~~~~~---~d~ 149 (391)
T 3dzz_A 88 CVFASGVVPAISAMVRQFT-----------SPGDQILVQEPVYNMFYSVIEGNGRRVI-S---SDLIYENSKYS---VNW 149 (391)
T ss_dssp EEEESCHHHHHHHHHHHHS-----------CTTCEEEECSSCCHHHHHHHHHTTCEEE-E---CCCEEETTEEE---CCH
T ss_pred EEECCCHHHHHHHHHHHhC-----------CCCCeEEECCCCcHHHHHHHHHcCCEEE-E---eeeeecCCcee---ecH
Confidence 9999999999999999764 1589999999999987655443332211 1 1110 11100 389
Q ss_pred HHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-cccccccCC-Ccc----
Q 013008 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYGI-FPD---- 309 (451)
Q Consensus 236 ~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~~-~pd---- 309 (451)
++|+++++..++++|+++.+++++|. +++.+.+++|+++|++||+++|+||+|+++.+.|. ......++. .+|
T Consensus 150 ~~l~~~l~~~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~ 228 (391)
T 3dzz_A 150 ADLEEKLATPSVRMMVFCNPHNPIGY-AWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVS 228 (391)
T ss_dssp HHHHHHHTSTTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEE
T ss_pred HHHHHHHhccCceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEE
Confidence 99999998557788877777777775 56888899999999999999999999999877774 223333332 267
Q ss_pred eeeeccccc-CCccccccccc-HHHHhhccCCC-ccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HH
Q 013008 310 IMTLAKPLA-GGLPIGAALVT-EKVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KL 372 (451)
Q Consensus 310 i~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~ 372 (451)
+.++||+++ +|+|+|+++++ +++++.+.... ...+++.++++++++.++|+.. +++.++ .+
T Consensus 229 ~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l 306 (391)
T 3dzz_A 229 LISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG--HDWLRELKQVLRDNFAYAREFL 306 (391)
T ss_dssp EECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeChhhccccchhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHH
Confidence 557899998 78999999997 88988876432 2345678999999999988752 222211 23
Q ss_pred hC-CCCcceeccc-ceeEEEEec---CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008 373 AR-NPHVKDVRGL-GLIIGIEFD---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCK 441 (451)
Q Consensus 373 ~~-~~~~~~v~g~-G~~~~~~~~---~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~ 441 (451)
++ +|.+....+. ++++++.+. .+..++.+.|+ ++||.+.++.. .+.+|++++ ++++++++++++|.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~ 384 (391)
T 3dzz_A 307 AKEVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQ 384 (391)
T ss_dssp HHHCTTSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHH
T ss_pred HhhCCCcEEeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence 33 5655444444 445567774 36788999997 89999987531 267999766 699999999999999
Q ss_pred HHHHHh
Q 013008 442 TLPVLD 447 (451)
Q Consensus 442 ~l~~~~ 447 (451)
++++++
T Consensus 385 ~l~~~~ 390 (391)
T 3dzz_A 385 GVLNLN 390 (391)
T ss_dssp HHHTCC
T ss_pred HHHHhh
Confidence 998654
No 45
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=2.3e-34 Score=285.40 Aligned_cols=328 Identities=15% Similarity=0.074 Sum_probs=239.3
Q ss_pred EeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC----CCeEEe
Q 013008 85 ASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----ADRVFF 160 (451)
Q Consensus 85 ~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~e~v~~ 160 (451)
.+++|+++||.+|++||||.++.. .++ .+|+|.+++.+++.+..+.+.....+.+..+++++.+.++ .+++++
T Consensus 10 ~~~~g~~~~d~~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i~~ 86 (377)
T 3fdb_A 10 LRARNTMKWTRYGQGVLPLWVAES--DFS-TCPAVLQAITDAVQREAFGYQPDGSLLSQATAEFYADRYGYQARPEWIFP 86 (377)
T ss_dssp HHHTCCHHHHSSCTTSEECCSSCC--CSC-CCHHHHHHHHHHHHTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred hcCCCCceeeccCCCeeeecccCC--CCC-CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEE
Confidence 379999999999999999998853 454 8999999999998863322221224557777777765543 679999
Q ss_pred cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC---CCHHH
Q 013008 161 SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---GNIEA 237 (451)
Q Consensus 161 ~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~ 237 (451)
++||++|++.+++.+. .++++|++.+|+||++.......+.. +..+|. .|+++
T Consensus 87 t~g~~~a~~~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~d~~~ 142 (377)
T 3fdb_A 87 IPDVVRGLYIAIDHFT-----------PAQSKVIVPTPAYPPFFHLLSATQRE-------------GIFIDATGGINLHD 142 (377)
T ss_dssp ESCHHHHHHHHHHHHS-----------CTTCCEEEEESCCTHHHHHHHHHTCC-------------EEEEECTTSCCHHH
T ss_pred eCChHHHHHHHHHHhc-----------CCCCEEEEcCCCcHhHHHHHHHcCCE-------------EEEccCCCCCCHHH
Confidence 9999999999999764 15789999999999886554333221 222333 28999
Q ss_pred HHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc-c----cccccccCCCcceee
Q 013008 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG-Y----LWAHEHYGIFPDIMT 312 (451)
Q Consensus 238 le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G-~----~~~~~~~~~~pdi~t 312 (451)
|+++++++..++++++| ++++|. .++.+.+++|+++|++||+++|+||+|+++.+.| . .......+..+++.+
T Consensus 143 l~~~l~~~~~~v~i~~p-~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s 220 (377)
T 3fdb_A 143 VEKGFQAGARSILLCNP-YNPLGM-VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITA 220 (377)
T ss_dssp HHHHHHTTCCEEEEESS-BTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEEC
T ss_pred HHHHhccCCCEEEEeCC-CCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEe
Confidence 99999765445555555 566665 5688889999999999999999999999987776 2 112222334466778
Q ss_pred eccccc-CCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhC-C
Q 013008 313 LAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLAR-N 375 (451)
Q Consensus 313 ~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~-~ 375 (451)
+||++| +|+|+||+++ ++++++.+.......+++.|+++++++.++|+.. ++++++ .+++ +
T Consensus 221 ~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~ 298 (377)
T 3fdb_A 221 PSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG--TDFLNQEVAYLKNNHDFLLHEIPKRI 298 (377)
T ss_dssp STTTTTCGGGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHhccCcchhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999997 6899998765 7889888876655667889999999999998853 222221 2233 5
Q ss_pred CCcceecccce-eEEEEecC--ChHHHHHHHHHC-CceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 376 PHVKDVRGLGL-IIGIEFDV--SATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 376 ~~~~~v~g~G~-~~~~~~~~--~~~~~~~~l~~~-Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
|.+..+.+.+. ++++.+.. ...++++.|+++ ||++.|+.. .+.+|++++ .++|++++++++|.+++++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 299 PGAKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp TTCEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHTT
T ss_pred CCceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence 55554555544 44677742 235678888876 999987631 378999866 4899999999999998865
No 46
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=5.9e-33 Score=276.84 Aligned_cols=338 Identities=12% Similarity=0.104 Sum_probs=226.1
Q ss_pred EEEeecccEEEecCCC-----EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCH-HHHHHHHHHhhccC--
Q 013008 83 VLASGKGCKLYDAEGR-----EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSI-PQIELAKRLVACSF-- 154 (451)
Q Consensus 83 ~~~~~~G~~l~d~~G~-----~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~-- 154 (451)
+-.+++|+++||.+|+ ++|||.++.. .+| .+|+|.+++.+++++....+.....+ .+.++++++.+.++
T Consensus 8 ~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~~ 84 (390)
T 1d2f_A 8 VDRHGTWCTQWDYVADRFGTADLLPFTISDM--DFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTA 84 (390)
T ss_dssp ----------------------CEECCSSSC--SSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccccCCCccchhhhccccCCCCeeEeeecCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCCC
Confidence 4468999999999997 7899987754 566 78999999999987532222222445 56677777665544
Q ss_pred --CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-eeEee
Q 013008 155 --ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVE 231 (451)
Q Consensus 155 --~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 231 (451)
.++|++++||++|++.+++++. .++++|++.+|+||++.......+.. ... .+..++ ..+
T Consensus 85 ~~~~~v~~t~g~~~al~~~~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~-~~~---v~~~~~~~~~-- 147 (390)
T 1d2f_A 85 IDSQTVVYGPSVIYMVSELIRQWS-----------ETGEGVVIHTPAYDAFYKAIEGNQRT-VMP---VALEKQADGW-- 147 (390)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHSS-----------CTTCEEEEEESCCHHHHHHHHHTTCE-EEE---EECEECSSSE--
T ss_pred CCHHHEEEcCCHHHHHHHHHHHhc-----------CCCCEEEEcCCCcHHHHHHHHHCCCE-EEE---eecccCCCcc--
Confidence 6789999999999999999664 15789999999999987654433221 111 111100 000
Q ss_pred CCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCc---
Q 013008 232 YGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP--- 308 (451)
Q Consensus 232 ~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p--- 308 (451)
..|+++|++++++.++++|++...++++|. +++.+++++|+++|++||++||+||+|+++.+.|..+. ....+.+
T Consensus 148 ~~d~~~l~~~l~~~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~ 225 (390)
T 1d2f_A 148 FCDMGKLEAVLAKPECKIMLLCSPQNPTGK-VWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHI-PWSNVARGDW 225 (390)
T ss_dssp ECCHHHHHHHHTSTTEEEEEEESSCTTTCC-CCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC-CGGGTCCSSE
T ss_pred ccCHHHHHHHhccCCCeEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc-CHHHcchhhH
Confidence 038999999997546777776555666665 46788999999999999999999999999877664321 1112222
Q ss_pred c-eeeeccccc-CCccccccccc-HHHHhhccCCCc-cCCC-CCcHHHHHHHHHHHHHhcChHHHHH-------------
Q 013008 309 D-IMTLAKPLA-GGLPIGAALVT-EKVASAINYGDH-GSTF-AGSPLVCNAAIAVLDKISNPAFLAS------------- 370 (451)
Q Consensus 309 d-i~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~~-~~t~-~~~~~~~aaa~aal~~~~~~~~~~~------------- 370 (451)
| +.++||.++ +|+|+|+++++ +++++.+..... ..++ +.|+++++++.++|+.. ++++++
T Consensus 226 d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~ 303 (390)
T 1d2f_A 226 ALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG--APWLDALRIYLKDNLTYIA 303 (390)
T ss_dssp EEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHH
T ss_pred hhccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHH
Confidence 3 889999998 78999999985 788887764444 4565 67999999999988742 222221
Q ss_pred -HHhC-CCCcceecccc-eeEEEEec---CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHH
Q 013008 371 -KLAR-NPHVKDVRGLG-LIIGIEFD---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEI 438 (451)
Q Consensus 371 -~~~~-~~~~~~v~g~G-~~~~~~~~---~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~ 438 (451)
.+++ +|.+..+++.| +++++.+. .+..++.+.|+ ++||++.++.. .+.+|++++. +++++++++++
T Consensus 304 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~ 381 (390)
T 1d2f_A 304 DKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAG 381 (390)
T ss_dssp HHHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHH
T ss_pred HHHHhhCCCCEEecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHH
Confidence 2333 55555455555 45577874 35778999999 58999988631 3689998775 68999999999
Q ss_pred HHHHHHHH
Q 013008 439 LCKTLPVL 446 (451)
Q Consensus 439 l~~~l~~~ 446 (451)
|.++++++
T Consensus 382 l~~~l~~~ 389 (390)
T 1d2f_A 382 LINAIRAV 389 (390)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998765
No 47
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=3.4e-33 Score=277.42 Aligned_cols=338 Identities=12% Similarity=0.050 Sum_probs=232.4
Q ss_pred ceEEEeecccEEEecC-CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC----C
Q 013008 81 PVVLASGKGCKLYDAE-GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----A 155 (451)
Q Consensus 81 p~~~~~~~G~~l~d~~-G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~ 155 (451)
+++..+++|+++||.. |+++|||.++.. .+ +.+|+|.+++.+++.+..+.+.....+.+.++++++++.++ .
T Consensus 6 ~~~~~~~~g~~~~d~~~~~~~i~l~~~~~--~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~ 82 (383)
T 3kax_A 6 KTVNRRGTHSIKWDTYKNEELIHAWIADM--DF-EVPQPIQTALKKRIEHPIFGYTLPPENIGDIICNWTKKQYNWDIQK 82 (383)
T ss_dssp -------------CCCSSSCCEECCCSSC--SS-CCCHHHHHHHHHHHHSCCCCCCCCCTTHHHHHHHHHHHHHCCCCCG
T ss_pred ceeeccCCCceeeeccCCCCeeecccccC--CC-CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh
Confidence 4566789999999954 589999998853 44 38999999999999764333333355668899999988765 6
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCH
Q 013008 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI 235 (451)
Q Consensus 156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (451)
+++++++||++|++.+++++. .++++|++.+|+||++.......+.... ..++.+. .+ .+. .|+
T Consensus 83 ~~v~~~~g~~~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-~~~~~~~-~~-~~~--~d~ 146 (383)
T 3kax_A 83 EWIVFSAGIVPALSTSIQAFT-----------KENESVLVQPPIYPPFFEMVTTNNRQLC-VSPLQKQ-ND-TYA--IDF 146 (383)
T ss_dssp GGEEEESCHHHHHHHHHHHHC-----------CTTCEEEECSSCCHHHHHHHHHTTCEEE-ECCCEEE-TT-EEE--CCH
T ss_pred hhEEEcCCHHHHHHHHHHHhC-----------CCCCEEEEcCCCcHHHHHHHHHcCCEEE-eccceec-CC-cEE--EcH
Confidence 789999999999999999764 2589999999999988755443322111 1011000 00 000 289
Q ss_pred HHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccc-----cCCCcc
Q 013008 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEH-----YGIFPD 309 (451)
Q Consensus 236 ~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~-----~~~~pd 309 (451)
++|++++.+ ++++|+++.+++++|. .++.+++++|+++|++||+++|+||+|+++++.|... .... .+..+.
T Consensus 147 ~~l~~~l~~-~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~ 224 (383)
T 3kax_A 147 EHLEKQFQQ-GVKLMLLCSPHNPIGR-VWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTIT 224 (383)
T ss_dssp HHHHHHHTT-TCCEEEEESSBTTTTB-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEE
T ss_pred HHHHHHhCc-CCeEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEE
Confidence 999999953 5666666666666675 5688999999999999999999999999987776421 1111 244566
Q ss_pred eeeeccccc-CCcccccccc-cHHHHhhccCCCc-cCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HH
Q 013008 310 IMTLAKPLA-GGLPIGAALV-TEKVASAINYGDH-GSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KL 372 (451)
Q Consensus 310 i~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~ 372 (451)
+.++||.++ +|+|+|++++ ++++++.+..... ..+++.|+++++++.++++.. +++.++ .+
T Consensus 225 ~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l 302 (383)
T 3kax_A 225 CMAPSKTFNIAGLQASIIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTEC--NDWLNEIRFYIEDNAKFACEYI 302 (383)
T ss_dssp EECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEChhhccCcchhheEEEeCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999 7899999988 6888888764432 334578999999999888642 222221 22
Q ss_pred hC-CCCcceecccce-eEEEEec---CChHHHHHHHH-HCCceeeecC---C--CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008 373 AR-NPHVKDVRGLGL-IIGIEFD---VSATPVVDACR-DSGLLVLTAG---K--GNVVRLVPPLIISEQELDQAVEILCK 441 (451)
Q Consensus 373 ~~-~~~~~~v~g~G~-~~~~~~~---~~~~~~~~~l~-~~Gv~~~~~~---~--~~~iri~~~~~~t~e~i~~~l~~l~~ 441 (451)
++ +|.+..+.+.|. +.++.+. .+..++.+.|+ ++||++.|+. . .+.+|++++ .+++++++++++|.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~~ 380 (383)
T 3kax_A 303 KDHIPTLSVMKPEGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIG--CPRSVLEEILNRLRH 380 (383)
T ss_dssp HHHCTTCEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECS--SCHHHHHHHHHHHHH
T ss_pred HhhCCCceEecCCceEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 33 565555555554 4557774 36788999998 6899998852 1 378999766 589999999999998
Q ss_pred HH
Q 013008 442 TL 443 (451)
Q Consensus 442 ~l 443 (451)
++
T Consensus 381 ~l 382 (383)
T 3kax_A 381 TF 382 (383)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 48
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=5e-34 Score=286.64 Aligned_cols=325 Identities=17% Similarity=0.139 Sum_probs=243.0
Q ss_pred eecccEEEecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhccccc-----CCCCCHHHHHHHHHHhhccCCCeEE
Q 013008 86 SGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVS-----NMYYSIPQIELAKRLVACSFADRVF 159 (451)
Q Consensus 86 ~~~G~~l~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~e~v~ 159 (451)
++.+.+++|.+|++||||+++.+ +|+ .||+|.+++.++++++.... .....+...+++++++++++.+.++
T Consensus 47 ~~~~~~~~~~~g~~~ld~~s~~~---l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i 123 (409)
T 3kki_A 47 NGKHLVLGKQASPDDIILQSNDY---LALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECL 123 (409)
T ss_dssp TSSCTTCCCCCCTTSEECCCSCT---TCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEE
T ss_pred CCCeeeeCCCCCCceEEeeccCc---cCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEE
Confidence 57788889999999999999765 666 68999999999998743211 1122344678999999999988888
Q ss_pred ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHH
Q 013008 160 FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239 (451)
Q Consensus 160 ~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 239 (451)
++++|++|+..+++++. + ++|.|++.++.|.. ...++...+. .+..++.+|+++|+
T Consensus 124 ~~~sGt~a~~~~l~~~~---~--------~gd~Vl~~~~~~~~-~~~~~~~~g~------------~~~~~~~~d~~~le 179 (409)
T 3kki_A 124 LSQSGWNANVGLLQTIC---Q--------PNTNVYIDFFAHMS-LWEGARYANA------------QAHPFMHNNCDHLR 179 (409)
T ss_dssp EESCHHHHHHHHHHHHC---C--------TTCEEEEETTSCHH-HHHHHHHTTC------------EEEEECTTCHHHHH
T ss_pred EecchHHHHHHHHHHhc---C--------CCCEEEECCCcCHH-HHHHHHHcCC------------eEEEecCCCHHHHH
Confidence 88999999999998654 1 57888887776644 3344333321 23345567999999
Q ss_pred HhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC--CCcccccccccccCC--Ccce--eee
Q 013008 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG--LGRTGYLWAHEHYGI--FPDI--MTL 313 (451)
Q Consensus 240 ~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~~~~~~~~--~pdi--~t~ 313 (451)
++++..++++|+++++++++|.+.+ +++|+++|++||++||+||+|++ +|++|..+. ..+++ .+|+ .++
T Consensus 180 ~~l~~~~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s~ 254 (409)
T 3kki_A 180 MLIQRHGPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASL 254 (409)
T ss_dssp HHHHHHCSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEES
T ss_pred HHHHhcCCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEeec
Confidence 9997545689999999999998776 99999999999999999999987 777776543 45565 4666 689
Q ss_pred cccccCCcccccccccHHHHhhccCCCcc--CCCCCcHHHHHHHHHHHHHhcC-hHHHHH----------HHhCCCCcce
Q 013008 314 AKPLAGGLPIGAALVTEKVASAINYGDHG--STFAGSPLVCNAAIAVLDKISN-PAFLAS----------KLARNPHVKD 380 (451)
Q Consensus 314 sK~lg~G~~iG~v~~~~~i~~~~~~~~~~--~t~~~~~~~~aaa~aal~~~~~-~~~~~~----------~~~~~~~~~~ 380 (451)
||++++| .|++++++++++.+...... .+.+.+++.++++.++++.++. +.+.++ .++... + .
T Consensus 255 sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~-~ 330 (409)
T 3kki_A 255 AKTFAYR--AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLG-L-T 330 (409)
T ss_dssp SSTTCSS--CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTT-C-C
T ss_pred chhhCCC--ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-C-c
Confidence 9999865 59999999988877543222 2334688999999999987643 233322 223332 1 1
Q ss_pred ecccceeEEEEecC--ChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 381 VRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 381 v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
+.+.|.++++.+.. ...++.+.|+++||++.+... .+.+|++++..++++++++++++|+++++..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 404 (409)
T 3kki_A 331 IRSESQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYG 404 (409)
T ss_dssp CCCSSSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhcC
Confidence 34678888888742 356789999999999875321 2689999999999999999999999998753
No 49
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=1.5e-32 Score=274.61 Aligned_cols=331 Identities=18% Similarity=0.152 Sum_probs=248.6
Q ss_pred CCceEEEeecccEEEecCCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhc
Q 013008 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVAC 152 (451)
Q Consensus 79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~ 152 (451)
+.|+.+++++|.++| .+|+++|||.++.+ +|+ .+|.+.+++.+++++....+. .+..+...+++++++++
T Consensus 25 ~~~~~~~~~~g~~~~-~~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~ 100 (398)
T 3a2b_A 25 AYFRPIQSKQDTEVK-IDGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAY 100 (398)
T ss_dssp CSSCCBCSCSSSEEE-ETTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHH
T ss_pred cceeeecCCCCceEE-ECCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHH
Confidence 578899999999999 89999999999855 788 899999999999876433211 12356688999999999
Q ss_pred cCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008 153 SFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232 (451)
Q Consensus 153 ~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (451)
++.+++++++||++|+..+++++. .+++.|++.+|+|.+.. ..+...+ ..+..++.
T Consensus 101 ~g~~~v~~~~ggt~a~~~~~~~~~-----------~~gd~V~~~~p~~~~~~-~~~~~~g------------~~~~~v~~ 156 (398)
T 3a2b_A 101 VGKEAAILFSTGFQSNLGPLSCLM-----------GRNDYILLDERDHASII-DGSRLSF------------SKVIKYGH 156 (398)
T ss_dssp HTCSEEEEESSHHHHHHHHHHHSS-----------CTTCEEEEETTCCHHHH-HHHHHSS------------SEEEEECT
T ss_pred hCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEECCccCHHHH-HHHHHcC------------CceEEeCC
Confidence 998999999999999999999764 15788999988876553 3333322 12345566
Q ss_pred CCHHHHHHhcCCC---CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC--CcccccccccccCCC
Q 013008 233 GNIEATRKLIQPG---KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL--GRTGYLWAHEHYGIF 307 (451)
Q Consensus 233 ~d~~~le~~l~~~---~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~--gr~G~~~~~~~~~~~ 307 (451)
.|+++|+++++.. ++++|+++++++++|.+.+ +++|+++|++||+++|+||+|..+ ++.+... .+.+++.
T Consensus 157 ~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~ 231 (398)
T 3a2b_A 157 NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLN 231 (398)
T ss_dssp TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCG
T ss_pred CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCC
Confidence 7999999998742 6889999999888888766 999999999999999999999643 3434332 3344543
Q ss_pred --ccee--eecccccC-CcccccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcC-hHHHHH---------
Q 013008 308 --PDIM--TLAKPLAG-GLPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISN-PAFLAS--------- 370 (451)
Q Consensus 308 --pdi~--t~sK~lg~-G~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~--------- 370 (451)
+|++ ++||.++. | |++++++++++.+... .+..+...+++.++++.++|+.++. ++..++
T Consensus 232 ~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~ 308 (398)
T 3a2b_A 232 DDVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAK 308 (398)
T ss_dssp GGCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred cCCeEEEecccccccCCC---cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 5777 89999984 4 9999999998887642 2344555677777677788876421 122222
Q ss_pred -HHhCCCCcceecccceeEEEEecC--ChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008 371 -KLARNPHVKDVRGLGLIIGIEFDV--SATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCK 441 (451)
Q Consensus 371 -~~~~~~~~~~v~g~G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~ 441 (451)
.++++ .+..+++.|.++++.+.. +..++.+.|+++||.+.++.. .+.+|++++..++++++++++++|++
T Consensus 309 ~~L~~~-g~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~ 387 (398)
T 3a2b_A 309 AQLLDH-GFDLGATESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVK 387 (398)
T ss_dssp HHHHHT-TCCBCSCCSSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHhc-CCCcCCCCCCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHH
Confidence 22223 233345668888888742 466799999999999988642 26799999988899999999999999
Q ss_pred HHHHH
Q 013008 442 TLPVL 446 (451)
Q Consensus 442 ~l~~~ 446 (451)
+++++
T Consensus 388 ~l~~~ 392 (398)
T 3a2b_A 388 VFKQA 392 (398)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98765
No 50
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=2.7e-33 Score=280.09 Aligned_cols=341 Identities=13% Similarity=0.079 Sum_probs=240.0
Q ss_pred EEEeecccEEEecCCC-------EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-
Q 013008 83 VLASGKGCKLYDAEGR-------EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF- 154 (451)
Q Consensus 83 ~~~~~~G~~l~d~~G~-------~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~- 154 (451)
+..+|+|+++||.+|+ +++||.++.. .++ .+|.+.+++.+++++....+.....+.+.++++++.+.++
T Consensus 9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~ 85 (399)
T 1c7n_A 9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADM--EFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQW 85 (399)
T ss_dssp CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSC--SSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred ccccCCCccccccchhhccccCCCceeeeecCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 4457999999998884 7899988763 455 6899999999998753222221222335556666555444
Q ss_pred ---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC-CCeeEe
Q 013008 155 ---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGVNFV 230 (451)
Q Consensus 155 ---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 230 (451)
.++|++++||++|+..+++++. .++++|++.+|+||++.......+ ..... .+.. .+..+.
T Consensus 86 ~~~~~~v~~t~g~~~a~~~~~~~l~-----------~~gd~vl~~~p~~~~~~~~~~~~g-~~~~~---~~~~~~~g~~~ 150 (399)
T 1c7n_A 86 DIQTDWIINTAGVVPAVFNAVREFT-----------KPGDGVIIITPVYYPFFMAIKNQE-RKIIE---CELLEKDGYYT 150 (399)
T ss_dssp CCCGGGEEEESSHHHHHHHHHHHHC-----------CTTCEEEECSSCCTHHHHHHHTTT-CEEEE---CCCEEETTEEE
T ss_pred CCChhhEEEcCCHHHHHHHHHHHhc-----------CCCCEEEEcCCCcHhHHHHHHHcC-CEEEe---cccccCCCCEE
Confidence 6789999999999999999764 157899999999999876544332 21111 1111 000010
Q ss_pred eCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-ccccc-----c
Q 013008 231 EYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH-----Y 304 (451)
Q Consensus 231 ~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~-----~ 304 (451)
.|+++|+++++..++++|+++..++++|. +++++++++|+++|++||++||+||+|+++++.|.. ..... .
T Consensus 151 --~d~~~l~~~l~~~~~~~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 227 (399)
T 1c7n_A 151 --IDFQKLEKLSKDKNNKALLFCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLA 227 (399)
T ss_dssp --CCHHHHHHHHTCTTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred --EcHHHHHHHhccCCCcEEEEcCCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcccc
Confidence 38999999997446777777656666665 578999999999999999999999999998766642 12221 2
Q ss_pred CCCcceeeeccccc-CCccccccccc-HHHHhhccCCCccCCC-CCcHHHHHHHHHHHHHhcChHHHHH-----------
Q 013008 305 GIFPDIMTLAKPLA-GGLPIGAALVT-EKVASAINYGDHGSTF-AGSPLVCNAAIAVLDKISNPAFLAS----------- 370 (451)
Q Consensus 305 ~~~pdi~t~sK~lg-~G~~iG~v~~~-~~i~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~~~----------- 370 (451)
+....+.++||.++ +|+|+|+++++ +++++.+.......++ +.|+++++++.++|+.. ++++++
T Consensus 228 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~ 305 (399)
T 1c7n_A 228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC--GKWLDGCIKVIDKNQRI 305 (399)
T ss_dssp TTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHH
Confidence 33445668999998 78999999986 6788887654334444 57899999999888742 222222
Q ss_pred ---HHhC-CCCcceecccce-eEEEEec---CChHHHHHHHH-HCCceeeecC-----CCCEEEEeCCCCCCHHHHHHHH
Q 013008 371 ---KLAR-NPHVKDVRGLGL-IIGIEFD---VSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAV 436 (451)
Q Consensus 371 ---~~~~-~~~~~~v~g~G~-~~~~~~~---~~~~~~~~~l~-~~Gv~~~~~~-----~~~~iri~~~~~~t~e~i~~~l 436 (451)
.+++ +|.+..+++.|. ++++.+. .+..++.+.|+ ++||++.|+. ..+.+|++++. +++++++++
T Consensus 306 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~l~~~l 383 (399)
T 1c7n_A 306 VKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA--PSSVIQESL 383 (399)
T ss_dssp HHHHHHHHCTTSBCCCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS--CHHHHHHHH
T ss_pred HHHHHHhhCCCCeEecCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc--CHHHHHHHH
Confidence 2333 665555556554 4567874 35778999998 6899998863 13689998765 489999999
Q ss_pred HHHHHHHHHHhh
Q 013008 437 EILCKTLPVLDS 448 (451)
Q Consensus 437 ~~l~~~l~~~~~ 448 (451)
++|.++++++++
T Consensus 384 ~~l~~~l~~~~~ 395 (399)
T 1c7n_A 384 ERLNKALKDLKN 395 (399)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 51
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=1.8e-33 Score=280.25 Aligned_cols=337 Identities=12% Similarity=0.047 Sum_probs=242.3
Q ss_pred eEEEeecccEEEecCCCEE-----EeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--
Q 013008 82 VVLASGKGCKLYDAEGREY-----LDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-- 154 (451)
Q Consensus 82 ~~~~~~~G~~l~d~~G~~~-----iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-- 154 (451)
++..+++|+++||.+|++| |||.++.. ..+.+|+|.+++.+++++..+.+..+..+.+.++++++++.++
T Consensus 11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~~---~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~ 87 (391)
T 4dq6_A 11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVADM---DFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWK 87 (391)
T ss_dssp CCCCTTTTBHHHHCHHHHHSCSCSEECCSSSC---SSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCC
T ss_pred ccccccCCceeeeecccccCCCCceeccccCC---CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4456799999999986555 99998753 3357899999999999864443333445558889999988765
Q ss_pred --CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008 155 --ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232 (451)
Q Consensus 155 --~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (451)
.+++++++||++|++.+++++. .++++|++.+|+||++.......+.... ..++.+...+...
T Consensus 88 ~~~~~v~~~~g~~~a~~~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~--- 152 (391)
T 4dq6_A 88 IKSEWLIYSPGVIPAISLLINELT-----------KANDKIMIQEPVYSPFNSVVKNNNRELI-ISPLQKLENGNYI--- 152 (391)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHS-----------CTTCEEEECSSCCTHHHHHHHHTTCEEE-ECCCEECTTSCEE---
T ss_pred CcHHHeEEcCChHHHHHHHHHHhC-----------CCCCEEEEcCCCCHHHHHHHHHcCCeEE-eeeeeecCCCceE---
Confidence 6799999999999999999764 1588999999999998765543332211 1111100011111
Q ss_pred CCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-ccccc-----CC
Q 013008 233 GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY-----GI 306 (451)
Q Consensus 233 ~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~-----~~ 306 (451)
-|+++|++++++ +++|+++.+++++|. +++.+.+++|+++|++||++||+||+|+++.+.|... ....+ +.
T Consensus 153 ~d~~~l~~~l~~--~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 229 (391)
T 4dq6_A 153 MDYEDIENKIKD--VKLFILCNPHNPVGR-VWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKN 229 (391)
T ss_dssp CCHHHHHHHCTT--EEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHT
T ss_pred eeHHHHHHHhhc--CCEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCc
Confidence 189999999976 777777666666775 5688889999999999999999999999987776421 11111 22
Q ss_pred Ccceeeeccccc-CCcccccccccH-HHHhhccCC-CccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------------
Q 013008 307 FPDIMTLAKPLA-GGLPIGAALVTE-KVASAINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS------------- 370 (451)
Q Consensus 307 ~pdi~t~sK~lg-~G~~iG~v~~~~-~i~~~~~~~-~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~------------- 370 (451)
.+.+.++||.++ +|+|+|++++++ ++++.+... ....+++.|+++++++.++++.. +++.++
T Consensus 230 ~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~ 307 (391)
T 4dq6_A 230 TITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG--ESWLESFLEYLESNIDFAI 307 (391)
T ss_dssp EEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHHH
Confidence 344668999998 689999999875 888877643 23345678999999999998852 222222
Q ss_pred -HHhC-CCCcceeccccee-EEEEec---CChHHHHHHHHHC-CceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHH
Q 013008 371 -KLAR-NPHVKDVRGLGLI-IGIEFD---VSATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEI 438 (451)
Q Consensus 371 -~~~~-~~~~~~v~g~G~~-~~~~~~---~~~~~~~~~l~~~-Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~ 438 (451)
.+++ +|.+..+++.|.+ .++.+. .+..++.+.|+++ ||++.|+.. .+.+|++++ +++|++++++++
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~ 385 (391)
T 4dq6_A 308 KYINENMPKLKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIR 385 (391)
T ss_dssp HHHHHHCTTSEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHH
T ss_pred HHHHhhCCCCEecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHH
Confidence 2233 5655555555544 457774 3678899999998 999987521 378999776 699999999999
Q ss_pred HHHHH
Q 013008 439 LCKTL 443 (451)
Q Consensus 439 l~~~l 443 (451)
|++++
T Consensus 386 l~~~l 390 (391)
T 4dq6_A 386 IKNAI 390 (391)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99876
No 52
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=3.6e-32 Score=270.50 Aligned_cols=337 Identities=19% Similarity=0.163 Sum_probs=248.2
Q ss_pred HhcccccCCCCceEEEeecccEEEecCCCEEEeeccCcccccCC-CCCHHHHHHHHHHHhhcccc--cC---CCCCHHHH
Q 013008 70 KKLLVGTYNRAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALG-HGDADWIKAVVDQANVLTHV--SN---MYYSIPQI 143 (451)
Q Consensus 70 ~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~--~~---~~~~~~~~ 143 (451)
.+.....+.+.|+.+.+++|.+++ .+|++||||.++.+ +| +.+|++.+++.+++++.... .. ........
T Consensus 12 ~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (384)
T 1bs0_A 12 DARRAADALRRRYPVAQGAGRWLV-ADDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQ 87 (384)
T ss_dssp HHCCGGGCCCCCCCCSBCSSSEEE-ETTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHH
T ss_pred HHHHhcCCccccccccCCCCceEE-ECCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHH
Confidence 334444556788899999999999 79999999999854 78 58999999999999874321 11 12446688
Q ss_pred HHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC
Q 013008 144 ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV 223 (451)
Q Consensus 144 ~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 223 (451)
+++++++++++.++++++++|++|+..+++++. + +++.|++.++.| +.....+...+
T Consensus 88 ~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~---~--------~gd~v~~~~~~~-~~~~~~~~~~g----------- 144 (384)
T 1bs0_A 88 ALEEELAEWLGYSRALLFISGFAANQAVIAAMM---A--------KEDRIAADRLSH-ASLLEAASLSP----------- 144 (384)
T ss_dssp HHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHC---C--------TTCEEEEETTCC-HHHHHHHHTSS-----------
T ss_pred HHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhC---C--------CCcEEEEccccc-HHHHHHHHHcC-----------
Confidence 999999999997788888899999999998653 1 467777666654 55444443332
Q ss_pred CCCeeEeeCCCHHHHHHhcCCC--CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CC-Ccccccc
Q 013008 224 MPGVNFVEYGNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GL-GRTGYLW 299 (451)
Q Consensus 224 ~~~~~~~~~~d~~~le~~l~~~--~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~-gr~G~~~ 299 (451)
..+..+|.+|+++|++++++. .+++|+++++++++|.+.+ +++|+++|++||+++|+||+|. ++ ++.|..+
T Consensus 145 -~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~ 219 (384)
T 1bs0_A 145 -SQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS 219 (384)
T ss_dssp -SEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH
T ss_pred -CCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCch
Confidence 224456677999999998642 3788999988888888776 8999999999999999999995 32 3344432
Q ss_pred cccccCCCccee--eecccccCCcccccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcC---hHHHHH--
Q 013008 300 AHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISN---PAFLAS-- 370 (451)
Q Consensus 300 ~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~-- 370 (451)
...++..+|++ ++||.++. +.|++++++++++.+... ....+.+.|++.++++.++|+.+.+ ++..++
T Consensus 220 -~~~~~~~~di~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 296 (384)
T 1bs0_A 220 -CWLQKVKPELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLA 296 (384)
T ss_dssp -HHHTTCCCSEEEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred -HHhcCCCCcEEEeeccchhhc--cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 24556678888 89999973 449999999998887542 2233457899999999999987653 222222
Q ss_pred --------HHhCCCCcceecccceeEEEEec--CChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHH
Q 013008 371 --------KLARNPHVKDVRGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQ 434 (451)
Q Consensus 371 --------~~~~~~~~~~v~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~ 434 (451)
.+++++ +....+.|.++++.+. ....++.+.|.++||.+.++.. .+.+|++++..++++++++
T Consensus 297 ~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~ 375 (384)
T 1bs0_A 297 ALITRFRAGVQDLP-FTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDR 375 (384)
T ss_dssp HHHHHHHHHHTTSS-CEECSCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHhcC-CcccCCCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHH
Confidence 223332 2223356778788774 2466799999999999987632 2579999998889999999
Q ss_pred HHHHHHHH
Q 013008 435 AVEILCKT 442 (451)
Q Consensus 435 ~l~~l~~~ 442 (451)
++++|+++
T Consensus 376 ~~~~l~~~ 383 (384)
T 1bs0_A 376 LLEVLHGN 383 (384)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999864
No 53
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=6.1e-33 Score=277.99 Aligned_cols=341 Identities=13% Similarity=0.054 Sum_probs=235.4
Q ss_pred EEEeecccEEEecCCC---EEEeeccCcccccCCCCCHHHHHHHHHHHhhcc---cccCCCCCHHHHHHHHHHhhccCC-
Q 013008 83 VLASGKGCKLYDAEGR---EYLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVSNMYYSIPQIELAKRLVACSFA- 155 (451)
Q Consensus 83 ~~~~~~G~~l~d~~G~---~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~- 155 (451)
++.+++|.++++..++ ++|||.+|.+. +++ .+|+|++|+.+++++.. +....+..+.+.++++++++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~ 98 (407)
T 3nra_A 21 VRQSAAGLEALIRGAPIEGRPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAP 98 (407)
T ss_dssp ------CCTTTCCSCCCCSCCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhhhhHHHhhcCCCCCceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4567788777665544 59999998663 343 78999999999987532 212223345588899999888763
Q ss_pred ----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcC--C-CCCee
Q 013008 156 ----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEP--V-MPGVN 228 (451)
Q Consensus 156 ----e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~--~-~~~~~ 228 (451)
+++++++||++|+..+++++. .++++|++.+|+|+++.......+.... ..++.+ . ..+..
T Consensus 99 ~~~~~~i~~~~g~~~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~ 166 (407)
T 3nra_A 99 VDARDGLIITPGTQGALFLAVAATV-----------ARGDKVAIVQPDYFANRKLVEFFEGEMV-PVQLDYVSADETRAG 166 (407)
T ss_dssp CCTTTSEEEESHHHHHHHHHHHTTC-----------CTTCEEEEEESCCTHHHHHHHHTTCEEE-EEEBCCCSSCCSSCC
T ss_pred CCCCCcEEEeCCcHHHHHHHHHHhC-----------CCCCEEEEcCCcccchHHHHHHcCCEEE-EeecccccccCcCCC
Confidence 799999999999999998653 1688999999999987654433322111 100000 0 00000
Q ss_pred EeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccc----
Q 013008 229 FVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEH---- 303 (451)
Q Consensus 229 ~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~---- 303 (451)
.|+++|++++++ ++++|+++..++++|. +++.+++++|+++|++||+++|+||+|+++++.|..+ ....
T Consensus 167 ----~d~~~l~~~l~~-~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~ 240 (407)
T 3nra_A 167 ----LDLTGLEEAFKA-GARVFLFSNPNNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAV 240 (407)
T ss_dssp ----BCHHHHHHHHHT-TCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTS
T ss_pred ----cCHHHHHHHHhh-CCcEEEEcCCCCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcc
Confidence 189999999976 4445544444566665 5689999999999999999999999999887766532 2222
Q ss_pred -cCCCcceeeeccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------
Q 013008 304 -YGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------- 370 (451)
Q Consensus 304 -~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------- 370 (451)
.+..+++.++||+++ +|+|+|++++++++++.+.......+++.++++++++.++|+. .++++++
T Consensus 241 ~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~~ 318 (407)
T 3nra_A 241 DAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIRDE 318 (407)
T ss_dssp CGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHHHHHH
Confidence 223355668999998 6899999999999998887555566777888888888777652 1122111
Q ss_pred ---HHhCCCCcceeccc-ceeEEEEec---CChHHHHHHHHH-CCceeeecC-----CCCEEEEeCCCCCCHHHHHHHHH
Q 013008 371 ---KLARNPHVKDVRGL-GLIIGIEFD---VSATPVVDACRD-SGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVE 437 (451)
Q Consensus 371 ---~~~~~~~~~~v~g~-G~~~~~~~~---~~~~~~~~~l~~-~Gv~~~~~~-----~~~~iri~~~~~~t~e~i~~~l~ 437 (451)
.+++++.+..+.+. |.++++.+. ....++.+.|++ +||++.++. ..+.+|++++. ++++|+++++
T Consensus 319 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~~~~ 396 (407)
T 3nra_A 319 LLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVAAAR 396 (407)
T ss_dssp HHHHHHTSTTCBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHHHHHH
T ss_pred HHHHHhcCCCceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHHHHH
Confidence 33455555444444 477777763 356789999976 599998753 13679998774 9999999999
Q ss_pred HHHHHHHHHh
Q 013008 438 ILCKTLPVLD 447 (451)
Q Consensus 438 ~l~~~l~~~~ 447 (451)
+|.+++++++
T Consensus 397 ~l~~~~~~~~ 406 (407)
T 3nra_A 397 RIVTLVERYR 406 (407)
T ss_dssp HHHHHHHHHB
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 54
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=1.1e-31 Score=272.77 Aligned_cols=324 Identities=13% Similarity=0.110 Sum_probs=231.7
Q ss_pred CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-----cccCCCCCHHHHHHHHHHhhccC---CCeEEecCCHHHHH
Q 013008 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-----HVSNMYYSIPQIELAKRLVACSF---ADRVFFSNTGTEAN 168 (451)
Q Consensus 97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~ 168 (451)
+..+|||.+|.+... ++.++++.+++.+++++.. +....+..+.+..+++.+.+..+ .++|++|+||++|+
T Consensus 75 ~~~~i~l~~g~p~~~-~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLPNPK-TFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCCCGG-GSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCCCch-hCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 346899999887543 4788999999999887632 11111122234445544433335 47999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----CCHHHHHHhcC-
Q 013008 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQ- 243 (451)
Q Consensus 169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~- 243 (451)
+.+++++. +++|.|++.+|+||++....... +. .+..+|. .|+++|+++++
T Consensus 154 ~~~~~~l~-----------~~Gd~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~g~d~~~L~~~l~~ 209 (448)
T 3aow_A 154 DLIGRVFL-----------NPGDIVVVEAPTYLAALQAFNFY-EP------------QYIQIPLDDEGMKVEILEEKLKE 209 (448)
T ss_dssp HHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHTT-CC------------EEEEEEEETTEECHHHHHHHHHH
T ss_pred HHHHHHHc-----------CCCCEEEEeCCChHHHHHHHHHc-CC------------EEEEeccCCCCCCHHHHHHHHhh
Confidence 99999764 26899999999999986554322 21 1222222 28999999986
Q ss_pred ---C-CCeEEEEEcccc-CCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc----ccccccCCCcceeeec
Q 013008 244 ---P-GKTAAVFVEPIQ-GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHEHYGIFPDIMTLA 314 (451)
Q Consensus 244 ---~-~~~aavi~ep~~-~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~~~~~~~~~pdi~t~s 314 (451)
+ .++++|++.|.. +++| .+++.+++++|.++|++||++||+||+|+++.+.|.. ...+..+..+++.+||
T Consensus 210 ~~~~~~~~k~v~~~~~~~NPtG-~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~S 288 (448)
T 3aow_A 210 LKSQGKKVKVVYTVPTFQNPAG-VTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFS 288 (448)
T ss_dssp HHHTTCCEEEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEEST
T ss_pred hhccCCCCeEEEECCCCCCCcC-CCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccch
Confidence 4 368888666654 4445 4578999999999999999999999999988665542 2222334556788999
Q ss_pred ccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---------------HHhCCC-Cc
Q 013008 315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---------------KLARNP-HV 378 (451)
Q Consensus 315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---------------~~~~~~-~~ 378 (451)
|.+++|+|+||+++++++++.+.......+++.|+++++++.++|+...-++++++ +.+.+| .+
T Consensus 289 K~~~~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~ 368 (448)
T 3aow_A 289 KILAPGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGV 368 (448)
T ss_dssp TTTCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred hhccccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 99998999999999999998886544455677899999999988874211122211 223345 35
Q ss_pred ceecc-cceeEEEEec--CChHHHHHHHHHCCceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 379 KDVRG-LGLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 379 ~~v~g-~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
..+.+ .|+++|+.+. .+..++++.|+++||++.|+. ..+++|++++. .++|+|++++++|.+++++..
T Consensus 369 ~~~~p~~g~~~~v~~~~~~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 369 KWTKPEGGMFIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEEL 446 (448)
T ss_dssp EECCCSBSSEEEEECSTTCCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCccEEEEEEcCCCCCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 44443 4788888884 357789999999999998852 13689998876 489999999999999997653
No 55
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=8.9e-32 Score=269.75 Aligned_cols=324 Identities=14% Similarity=0.088 Sum_probs=231.0
Q ss_pred CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC----CCCHHHHHHHHHHhhccC----CCeEEecCCHHHHH
Q 013008 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM----YYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN 168 (451)
Q Consensus 97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~ 168 (451)
|+++|||.++.+.. .|+.+|.+.+++.+++++......+ ...+.+.++++.+.+.++ .++|++++||++|+
T Consensus 33 g~~~idl~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~ 111 (407)
T 2zc0_A 33 GVKLISLAAGDPDP-ELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGAL 111 (407)
T ss_dssp SCCCEECCSCCCCT-TTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHH
T ss_pred CCceEeCCCCCCCc-hhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHH
Confidence 77899999887643 4788999999999998764311111 112234555555544335 67899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----CCHHHHHHhcC-
Q 013008 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQ- 243 (451)
Q Consensus 169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~- 243 (451)
+.+++++. .++++|++.+|+||++...... .+.. +..+|. .|+++|+++++
T Consensus 112 ~~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~-~g~~------------~~~v~~~~~~~d~~~l~~~l~~ 167 (407)
T 2zc0_A 112 DLLGRVLI-----------DPGDVVITENPSYINTLLAFEQ-LGAK------------IEGVPVDNDGMRVDLLEEKIKE 167 (407)
T ss_dssp HHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHT-TTCE------------EEEEEEETTEECHHHHHHHHHH
T ss_pred HHHHHHhc-----------CCCCEEEEeCCChHHHHHHHHH-cCCE------------EEEcccCCCCCCHHHHHHHHHh
Confidence 99999774 1588999999999987644322 2211 122222 28999999886
Q ss_pred ---C-CCeEEEEE-ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccccc---CCCcceeeec
Q 013008 244 ---P-GKTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY---GIFPDIMTLA 314 (451)
Q Consensus 244 ---~-~~~aavi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~---~~~pdi~t~s 314 (451)
+ .++++|++ +.+++++|. +++.+++++|+++|++||++||+||+|+++.+.|.. .....+ +..+++.++|
T Consensus 168 ~~~~~~~~~~v~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 246 (407)
T 2zc0_A 168 LKAKGQKVKLIYTIPTGQNPMGV-TMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLS 246 (407)
T ss_dssp HHHTTCCEEEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEEST
T ss_pred hhcccCCceEEEECCCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccc
Confidence 4 36777754 445566665 568999999999999999999999999988665542 222222 3334667899
Q ss_pred ccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh--c---ChHHHHH-----------HHhCCCCc
Q 013008 315 KPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI--S---NPAFLAS-----------KLARNPHV 378 (451)
Q Consensus 315 K~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~---~~~~~~~-----------~~~~~~~~ 378 (451)
|.+++|+|+|++++++++++.+.......+++.+++.++++.++|+.. + -+...++ +.+..|.+
T Consensus 247 K~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 326 (407)
T 2zc0_A 247 KVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNA 326 (407)
T ss_dssp TTTCTTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred cccCCCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999988999999999999988865545567778999999999888753 1 0111111 22223433
Q ss_pred cee-cccceeEEEEec--CChHHHHHHHHHC-CceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 379 KDV-RGLGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 379 ~~v-~g~G~~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
..+ +..|+++++.+. .+..++.+.|.++ ||++.++. ..+.+|++++.. +++++++++++|.++++++.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 405 (407)
T 2zc0_A 327 EFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEKF 405 (407)
T ss_dssp CBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHHC
T ss_pred EEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHh
Confidence 332 345778888884 3577899999998 99998752 136899998876 89999999999999998764
No 56
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.96 E-value=1.3e-34 Score=289.36 Aligned_cols=338 Identities=12% Similarity=0.068 Sum_probs=235.0
Q ss_pred eEEEeecccEEEecCCC--EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC----C
Q 013008 82 VVLASGKGCKLYDAEGR--EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF----A 155 (451)
Q Consensus 82 ~~~~~~~G~~l~d~~G~--~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~ 155 (451)
++..+++|+++||.+|+ ++|||..+.+ .++ .+|++.+++.+++++..+.+.....+.+.++++++.+.++ .
T Consensus 13 ~~~~~~~g~~~~d~~g~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~ 89 (392)
T 3b1d_A 13 APNRLSHHTYKWKETETDPQLLPAWIADM--DFE-VMPEVKQAIHDYAEQLVYGYTYASDELLQAVLDWEKSEHQYSFDK 89 (392)
Confidence 45567999999999999 9999988865 455 6899999999988653222211122334555555554444 6
Q ss_pred CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-eeEeeCCC
Q 013008 156 DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGN 234 (451)
Q Consensus 156 e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d 234 (451)
++|++++||++|++.+++++.. ++++|++.+|+||++.......+.... . .+..+. ..+. .|
T Consensus 90 ~~v~~~~g~~~a~~~~~~~~~~-----------~gd~vl~~~p~~~~~~~~~~~~g~~~~-~---~~~~~~~g~~~--~d 152 (392)
T 3b1d_A 90 EDIVFVEGVVPAISIAIQAFTK-----------EGEAVLINSPVYPPFARSVRLNNRKLV-S---NSLKEENGLFQ--ID 152 (392)
Confidence 7899999999999999997752 578999999999998754433222111 1 111000 0000 27
Q ss_pred HHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc----cccccc--cCCCc
Q 013008 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY----LWAHEH--YGIFP 308 (451)
Q Consensus 235 ~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~----~~~~~~--~~~~p 308 (451)
+++|++.++..++++|+++..++++|. +++.+++++|+++|++||++||+||+|++|.+.|. ...... .+..+
T Consensus 153 ~~~l~~~l~~~~~~~v~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i 231 (392)
T 3b1d_A 153 FEQLENDIVENDVKLYLLCNPHNPGGR-VWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFAL 231 (392)
Confidence 888988887445677777666666665 57888999999999999999999999999877663 222222 34557
Q ss_pred ceeeeccccc-CCcccccccccH-HHHhhccCCCccCCC-CCcHHHHHHHHHHHHHhcChHHHHH--------------H
Q 013008 309 DIMTLAKPLA-GGLPIGAALVTE-KVASAINYGDHGSTF-AGSPLVCNAAIAVLDKISNPAFLAS--------------K 371 (451)
Q Consensus 309 di~t~sK~lg-~G~~iG~v~~~~-~i~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~~~--------------~ 371 (451)
++.++||+++ +|+|+||+++++ ++++.+.......++ +.|+++++++.++|+.. ++++++ .
T Consensus 232 ~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~ 309 (392)
T 3b1d_A 232 VLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG--KPWLVALKAVLEENIQFAVEY 309 (392)
Confidence 7889999998 789999999875 588888755444444 46899999999888742 222222 2
Q ss_pred HhC-CCCcceecccceeE-EEEec---CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008 372 LAR-NPHVKDVRGLGLII-GIEFD---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILC 440 (451)
Q Consensus 372 ~~~-~~~~~~v~g~G~~~-~~~~~---~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~ 440 (451)
+++ +|.+..+++.|.++ |+++. ....++++.|+ ++||++.|+.. .+++|++ +..+++++++++++|.
T Consensus 310 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~--~~~~~e~i~~~l~~l~ 387 (392)
T 3b1d_A 310 FAQEAPRLKVMKPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLN--IAAPKSLVEEICKRIV 387 (392)
Confidence 222 44444455665554 56763 24567888897 78999987531 2467775 5557899999999999
Q ss_pred HHHH
Q 013008 441 KTLP 444 (451)
Q Consensus 441 ~~l~ 444 (451)
++++
T Consensus 388 ~~l~ 391 (392)
T 3b1d_A 388 CCLP 391 (392)
Confidence 8875
No 57
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.98 E-value=4.5e-31 Score=259.56 Aligned_cols=316 Identities=15% Similarity=0.105 Sum_probs=234.1
Q ss_pred ecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCH
Q 013008 87 GKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTG 164 (451)
Q Consensus 87 ~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG 164 (451)
.+|.++++.+|+++|||.+|.. .++ .+|++++++.+++++. ..++.....+++++++++++ .+++++++||
T Consensus 5 ~~~~~~~~~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~ 77 (354)
T 3ly1_A 5 PESAAFTAPSTDNPIRINFNEN--PLG-MSPKAQAAARDAVVKA----NRYAKNEILMLGNKLAAHHQVEAPSILLTAGS 77 (354)
T ss_dssp ----CCCCCCSSSCEECSSCCC--SSC-CCHHHHHHHHHTGGGT----TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHH
T ss_pred cccccccCCCCCceEEccCCCC--CCC-CCHHHHHHHHHHHhhC----cCCCCCchHHHHHHHHHHhCCChHHEEEeCCh
Confidence 4567778899999999999864 454 7899999999988752 22344557899999999987 6799999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHH
Q 013008 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATR 239 (451)
Q Consensus 165 ~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le 239 (451)
++|+..+++.+. .++++|++.+|+|+++.......+. .+..++.+ |+++|+
T Consensus 78 ~~a~~~~~~~l~-----------~~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~d~~~l~ 133 (354)
T 3ly1_A 78 SEGIRAAIEAYA-----------SLEAQLVIPELTYGDGEHFAKIAGM-------------KVTKVKMLDNWAFDIEGLK 133 (354)
T ss_dssp HHHHHHHHHHHC-----------CTTCEEEEESSSCTHHHHHHHHTTC-------------EEEEECCCTTSCCCHHHHH
T ss_pred HHHHHHHHHHHh-----------CCCCeEEECCCCchHHHHHHHHcCC-------------EEEEecCCCCCCCCHHHHH
Confidence 999999999764 1588999999999987654433221 12223333 899999
Q ss_pred HhcCC-CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-c---ccc-CCCcceeee
Q 013008 240 KLIQP-GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-H---EHY-GIFPDIMTL 313 (451)
Q Consensus 240 ~~l~~-~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~---~~~-~~~pdi~t~ 313 (451)
+.++. .++++|+++.+++++|. ..+.+.+++|+++| +||+++|+||+|+++.+.+.... . ..+ +....+.++
T Consensus 134 ~~l~~~~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 211 (354)
T 3ly1_A 134 AAVAAYSGPSIVYLVNPNNPTGT-ITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTF 211 (354)
T ss_dssp HHHHTCSSCEEEEEESSCTTTCC-CCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEES
T ss_pred HHhccCCCCCEEEEeCCCCCcCC-CcCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeC
Confidence 99973 46777777666666665 56778888888888 79999999999998876654211 1 222 444556689
Q ss_pred ccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCc
Q 013008 314 AKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHV 378 (451)
Q Consensus 314 sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~ 378 (451)
||.++ +|+++|++++++++++.+..... .++.|+++++++.++|+.. +++++ .++++ .+
T Consensus 212 sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~l~~~l~~~-~~ 285 (354)
T 3ly1_A 212 SKIHAMAGMRVGYAVAHPTVIALMGRYVA--GEKINFSGVDAALASMNDS---AFITYSKKSNDVSRQILLKALEDL-KL 285 (354)
T ss_dssp SSTTCCGGGCCEEEECCHHHHHHHGGGTT--CSCCCHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred hhhccChhhhheeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 99998 78999999999999998875432 3788999999998887632 22221 12222 23
Q ss_pred ceecccceeEEEEecCChHHHHHHHHHCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 379 KDVRGLGLIIGIEFDVSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 379 ~~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
..+++.|.++++.+..+..++.+.|.++||++. +. ..+.+|+++. +++++++++++|++++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 286 PYLPSEGNFVFHQLVVPLKDYQTHMADAGVLIG-RAFPPADNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CBCCCCSSEEEEECSSCHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred eECCCCceEEEEECCCCHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 345677889888886577889999999999987 32 2378999754 899999999999998864
No 58
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.98 E-value=9.7e-32 Score=268.78 Aligned_cols=323 Identities=13% Similarity=0.082 Sum_probs=230.7
Q ss_pred CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-HHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHH
Q 013008 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-IPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK 173 (451)
Q Consensus 97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~ 173 (451)
++++|||.++.... .||.+|++.+++.+++++.......+.. ....++++.++++++ .++|++++||++|++.+++
T Consensus 31 ~~~~i~l~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~ 109 (397)
T 2zyj_A 31 RPGILSFAGGLPAP-ELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGK 109 (397)
T ss_dssp STTCEEESSCCCCG-GGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCceecCCCCCCc-hhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHH
Confidence 45689999887643 5788999999999988763211111222 225677777777776 5799999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----CCHHHHHHhcCCCCeEE
Q 013008 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQPGKTAA 249 (451)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~aa 249 (451)
++. .++++|++.+|+||++.......+ .. +..+|. .|+++|++++++.++++
T Consensus 110 ~~~-----------~~gd~Vl~~~p~y~~~~~~~~~~g-~~------------~~~~~~~~~~~d~~~l~~~l~~~~~~~ 165 (397)
T 2zyj_A 110 VFL-----------DEGSPVLLEAPSYMGAIQAFRLQG-PR------------FLTVPAGEEGPDLDALEEVLKRERPRF 165 (397)
T ss_dssp HHC-----------CTTCEEEEEESCCHHHHHHHHTTC-CE------------EEEEEEETTEECHHHHHHHHHHCCCSC
T ss_pred HhC-----------CCCCEEEEeCCCcHHHHHHHHHcC-CE------------EEecCcCCCCCCHHHHHHHHhhcCCeE
Confidence 764 157899999999999875543322 11 111221 28999999986435666
Q ss_pred EE-EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccccc------CCCcceeeecccccCCc
Q 013008 250 VF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY------GIFPDIMTLAKPLAGGL 321 (451)
Q Consensus 250 vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~------~~~pdi~t~sK~lg~G~ 321 (451)
|+ ++.+++++|. .++.+++++|+++|++||+++|+||+|+++.+.|.. .....+ +....+.++||++++|+
T Consensus 166 v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~ 244 (397)
T 2zyj_A 166 LYLIPSFQNPTGG-LTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGL 244 (397)
T ss_dssp EEECCBSCTTTCC-BCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGG
T ss_pred EEECCCCcCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccc
Confidence 64 4444555565 578999999999999999999999999988766642 222222 22344668999999889
Q ss_pred ccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---------------HHhCCC-Cccee-ccc
Q 013008 322 PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---------------KLARNP-HVKDV-RGL 384 (451)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---------------~~~~~~-~~~~v-~g~ 384 (451)
|+|++++++++++.+.......+++.|+++++++.++|+.... ++.++ +.+.+| .+..+ +..
T Consensus 245 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~ 323 (397)
T 2zyj_A 245 RVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS-ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKG 323 (397)
T ss_dssp CCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHH-HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSB
T ss_pred eeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCc
Confidence 9999999999998886544455677799999998888863210 11111 222244 34433 345
Q ss_pred ceeEEEEec--CChHHHHHHHHHCCceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 385 GLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 385 G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
|+++++.+. .+..++.+.|.++||++.++. ..+.+|++++.. +++++++++++|.++++++.
T Consensus 324 g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 324 GMFVWMELPKGLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp SSEEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 788888884 357789999999999998752 136899998864 89999999999999998764
No 59
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.98 E-value=6.8e-31 Score=265.35 Aligned_cols=323 Identities=16% Similarity=0.102 Sum_probs=227.9
Q ss_pred EEEeeccCcccccCCCCCHHHHHHHHHHHhhc---ccccCC--CCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHH
Q 013008 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVL---THVSNM--YYSIPQIELAKRLVACSF----AD-RVFFSNTGTEAN 168 (451)
Q Consensus 99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~~~--~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~ 168 (451)
++|||.++.+ .+| .+|.+.+++.+++++. .+.+.. +..+.+.++++++.+.++ .+ +|++++||++|+
T Consensus 38 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGFP--DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114 (429)
T ss_dssp CCEECCSSSC--SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CEEEecCCCC--CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence 5789988876 567 7899999999998762 111111 122335566666655444 56 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-----eeEeeC-CCHHHHHHhc
Q 013008 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-----VNFVEY-GNIEATRKLI 242 (451)
Q Consensus 169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~d~~~le~~l 242 (451)
+.+++++. .++++|++.+|+||++....... +..... .+..++ +....+ .|+++|++.+
T Consensus 115 ~~~~~~~~-----------~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~---~~~~~~~~~~~~~~~~~~~d~~~l~~~l 179 (429)
T 1yiz_A 115 YATIQGHV-----------DEGDEVIIIEPFFDCYEPMVKAA-GGIPRF---IPLKPNKTGGTISSADWVLDNNELEALF 179 (429)
T ss_dssp HHHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHT-TCEEEE---EECBCCCSSSSEEGGGCBCCHHHHHHHC
T ss_pred HHHHHHhc-----------CCCCEEEEcCCCchhHHHHHHHc-CCEEEE---EeCCcccccccccccCcccCHHHHHHHh
Confidence 99999764 15789999999999987554332 211111 111111 000011 3899999999
Q ss_pred CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccc----ccCCCcceeeecccc
Q 013008 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHE----HYGIFPDIMTLAKPL 317 (451)
Q Consensus 243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~----~~~~~pdi~t~sK~l 317 (451)
++ ++++|+++++++++|. .++++++++|+++|++||++||+||+|++|++.|.. .... ..+..+++.++||.+
T Consensus 180 ~~-~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~ 257 (429)
T 1yiz_A 180 NE-KTKMIIINTPHNPLGK-VMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTF 257 (429)
T ss_dssp CT-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHH
T ss_pred cc-CceEEEECCCCCCCCc-cCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhcc
Confidence 64 6788888877777776 468899999999999999999999999998776642 1111 234556677999999
Q ss_pred c-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH-----hcChHHHHH--------------HHhCCCC
Q 013008 318 A-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----ISNPAFLAS--------------KLARNPH 377 (451)
Q Consensus 318 g-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~--------------~~~~~~~ 377 (451)
+ +|+|+|++++++++++.+....+..+++.++++++++.++|+. ...++++++ .+++++
T Consensus 258 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g- 336 (429)
T 1yiz_A 258 SLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVG- 336 (429)
T ss_dssp TCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 8 6899999999999998886555566888999999999999987 422333222 122222
Q ss_pred cceecc-cceeEEEEecC--------------ChHHHHHHHH-HCCceeeecC----------CCCEEEEeCCCCCCHHH
Q 013008 378 VKDVRG-LGLIIGIEFDV--------------SATPVVDACR-DSGLLVLTAG----------KGNVVRLVPPLIISEQE 431 (451)
Q Consensus 378 ~~~v~g-~G~~~~~~~~~--------------~~~~~~~~l~-~~Gv~~~~~~----------~~~~iri~~~~~~t~e~ 431 (451)
+..+.+ .|+++++++.. ...++++.|+ ++||++.|+. ..+++|++++ .++++
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~ 414 (429)
T 1yiz_A 337 MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDEN 414 (429)
T ss_dssp CEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHH
T ss_pred CcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHH
Confidence 222233 47788888842 2457888887 7899998752 0368999877 49999
Q ss_pred HHHHHHHHHHHHH
Q 013008 432 LDQAVEILCKTLP 444 (451)
Q Consensus 432 i~~~l~~l~~~l~ 444 (451)
|++++++|+++++
T Consensus 415 i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 415 LQKAAEILRKWKG 427 (429)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998764
No 60
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.98 E-value=1.7e-31 Score=269.70 Aligned_cols=325 Identities=12% Similarity=0.088 Sum_probs=230.1
Q ss_pred CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc---cccC--CCCCHHHHHHHHHHhhccC-----CCeEEecCCHHH
Q 013008 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT---HVSN--MYYSIPQIELAKRLVACSF-----ADRVFFSNTGTE 166 (451)
Q Consensus 97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~--~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~e 166 (451)
++++|||.+|.+.. .|+.+|++.+++.+++++.. ..+. ....+.+.++++++.+.++ .++|++++||++
T Consensus 42 ~~~~idl~~g~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVPDP-ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSCCG-GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCCCc-ccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 46789999987643 58899999999999987631 1111 1122335666666654424 468999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----CCHHHHHHhc
Q 013008 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLI 242 (451)
Q Consensus 167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l 242 (451)
|+..+++++. .++++|++.+|+||++.......+. . +..+|. .|+++|++++
T Consensus 121 al~~~~~~l~-----------~~gd~Vl~~~p~y~~~~~~~~~~g~-~------------~~~v~~~~~~~d~~~l~~~l 176 (425)
T 1vp4_A 121 ALDLIGKLFL-----------DDESYCVLDDPAYLGAINAFRQYLA-N------------FVVVPLEDDGMDLNVLERKL 176 (425)
T ss_dssp HHHHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHTTTC-E------------EEEEEEETTEECHHHHHHHH
T ss_pred HHHHHHHHhC-----------CCCCEEEEeCCCcHHHHHHHHHcCC-E------------EEEeccCCCCCCHHHHHHHH
Confidence 9999999664 1578999999999998755433221 1 111221 2899999988
Q ss_pred CC-------CCeEEEEEc-cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccccc---CCCcce
Q 013008 243 QP-------GKTAAVFVE-PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY---GIFPDI 310 (451)
Q Consensus 243 ~~-------~~~aavi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~---~~~pdi 310 (451)
++ .++++|++. ..++++|. +++.+++++|+++|++||++||+||+|+++.+.|.. .....+ +....+
T Consensus 177 ~~~~~~~~~~~~~~v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~ 255 (425)
T 1vp4_A 177 SEFDKNGKIKQVKFIYVVSNFHNPAGV-TTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLL 255 (425)
T ss_dssp HHHHHTTCGGGEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEE
T ss_pred HhhhhcccCCCceEEEECCCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEE
Confidence 64 267777544 34455554 578999999999999999999999999988666642 222222 223445
Q ss_pred eeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH---------------HHhCC
Q 013008 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS---------------KLARN 375 (451)
Q Consensus 311 ~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~---------------~~~~~ 375 (451)
.++||.+++|+|+|++++++++++.+.......+++.|+++++++.++|+....+++.++ +.+..
T Consensus 256 ~s~sK~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 335 (425)
T 1vp4_A 256 NTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYF 335 (425)
T ss_dssp EESTTTTCGGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eccccccccccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 689999998899999999999998886544455677899999999999986311111111 22223
Q ss_pred C---Cccee-cccceeEEEEec--CChHHHHHHHHHCCceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008 376 P---HVKDV-RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKT 442 (451)
Q Consensus 376 ~---~~~~v-~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~~ 442 (451)
| .+..+ +..|+++++.+. .+..++++.|+++||++.|+. ..+.+|++++.. +++++++++++|+++
T Consensus 336 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~ 414 (425)
T 1vp4_A 336 SDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLREV 414 (425)
T ss_dssp TTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHHH
T ss_pred CCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHH
Confidence 3 24333 345778888884 246678999999999998752 136899998764 899999999999999
Q ss_pred HHHHhh
Q 013008 443 LPVLDS 448 (451)
Q Consensus 443 l~~~~~ 448 (451)
++++..
T Consensus 415 l~~~~~ 420 (425)
T 1vp4_A 415 VLEYGK 420 (425)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987654
No 61
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.98 E-value=5.2e-31 Score=260.50 Aligned_cols=309 Identities=15% Similarity=0.105 Sum_probs=232.6
Q ss_pred CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC---CeEEecCCHHHHHHHHHH
Q 013008 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIK 173 (451)
Q Consensus 97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---e~v~~~~sG~eA~~~al~ 173 (451)
.+.+|||.++.. .++ .+|+|.+++.+++.+... ..++.....+++++++++++. +++++++||++|+..+++
T Consensus 29 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~--~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 29 SHGLVKLDAMEN--PYR-LPPALRSELAARLGEVAL--NRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp CTTCEECCSSCC--CCC-CCHHHHHHHHHHHHHHHT--TCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH
T ss_pred CCCeeEccCCCC--CCC-CCHHHHHHHHHHhhhhhh--hcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH
Confidence 367899998873 454 789999999999875321 223333467889999998875 799999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeE
Q 013008 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTA 248 (451)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a 248 (451)
.+. .++++|++.+|+|+++.......+.. +..++. .|+++|++++++.+++
T Consensus 104 ~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~d~~~l~~~l~~~~~~ 159 (367)
T 3euc_A 104 AAA-----------RPGAKVMAPVPGFVMYAMSAQFAGLE-------------FVGVPLRADFTLDRGAMLAAMAEHQPA 159 (367)
T ss_dssp HTC-----------CTTCEEEEEESCSCCSCHHHHTTTCE-------------EEEEECCTTSCCCHHHHHHHHHHHCCS
T ss_pred HHc-----------CCCCEEEEcCCCHHHHHHHHHHcCCe-------------EEEecCCCCCCCCHHHHHHHhhccCCC
Confidence 664 15889999999999987554332211 122221 2899999999753566
Q ss_pred EEEEccccCCCCccccCHHHHHHHHHHHHHh--CCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccc
Q 013008 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAA 326 (451)
Q Consensus 249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v 326 (451)
+|+++.+++++|. .++.+.+++|+++|++| |+++|+||+|++|+..+........+..+++.++||...+|+++|++
T Consensus 160 ~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~ 238 (367)
T 3euc_A 160 IVYLAYPNNPTGN-LFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYV 238 (367)
T ss_dssp EEEEESSCTTTCC-CCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEE
T ss_pred EEEEcCCCCCCCC-CCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceee
Confidence 7777766666675 56888899999999999 99999999999886544433444455567777999993358999999
Q ss_pred cccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEe
Q 013008 327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEF 392 (451)
Q Consensus 327 ~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~ 392 (451)
++++++++.+... ..+++.|+++++++.++|+. .+++++ .++++|.+...++.|.++++.+
T Consensus 239 ~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~~~ 313 (367)
T 3euc_A 239 AGDPQWLEQLDKV--RPPYNVNVLTEATALFALEH---VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANFLLARV 313 (367)
T ss_dssp EECHHHHHHHGGG--CCSSCCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSSEEEEEC
T ss_pred eeCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCeEEEEEC
Confidence 9999999888643 34677899999999998874 222211 3345665655677788888888
Q ss_pred cCChHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008 393 DVSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLP 444 (451)
Q Consensus 393 ~~~~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~ 444 (451)
. +..++.+.|.++||++.++.. .+.+|++++ +++++++++++|+++++
T Consensus 314 ~-~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 314 P-DAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp S-CHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred C-CHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 6 678899999999999987642 368999855 89999999999998763
No 62
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.98 E-value=7.9e-31 Score=261.57 Aligned_cols=316 Identities=13% Similarity=0.075 Sum_probs=221.8
Q ss_pred cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHhhcc----CCCeEEecCCHHHHH
Q 013008 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACS----FADRVFFSNTGTEAN 168 (451)
Q Consensus 95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~----~~e~v~~~~sG~eA~ 168 (451)
.+|+++|||.+|.. .++ .+|+|.+++.+++++....+. .+..+.+.++++++.+.+ ..++|++|+||++|+
T Consensus 28 ~~g~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al 104 (391)
T 3h14_A 28 EAGRRIIHMEVGQP--GTG-APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF 104 (391)
T ss_dssp HTTCCCEECCCSSC--SSC-SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred hcCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence 36899999999876 344 388999999998875322111 112233555666655443 367999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-------CHHHHHHh
Q 013008 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-------NIEATRKL 241 (451)
Q Consensus 169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~ 241 (451)
..+++.+. .++++|++.+|+|+++.......+. .+..++.+ |+++|++.
T Consensus 105 ~~~~~~l~-----------~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~~~l~~~ 160 (391)
T 3h14_A 105 LLAFTALF-----------DSGDRVGIGAPGYPSYRQILRALGL-------------VPVDLPTAPENRLQPVPADFAGL 160 (391)
T ss_dssp HHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHHTTC-------------EEEEEECCGGGTTSCCHHHHTTS
T ss_pred HHHHHHhc-----------CCCCEEEEcCCCCccHHHHHHHcCC-------------EEEEeecCcccCCCCCHHHHHhc
Confidence 99999764 1689999999999987654433221 12222221 78888776
Q ss_pred cCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-ccccCCCcceeeeccccc-C
Q 013008 242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-G 319 (451)
Q Consensus 242 l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~~pdi~t~sK~lg-~ 319 (451)
++++|+++.+++++|. .++.+.+++|+++|++||+++|+||+|++|.+.|.... ....+....+.++||.+| +
T Consensus 161 ----~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 235 (391)
T 3h14_A 161 ----DLAGLMVASPANPTGT-MLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMT 235 (391)
T ss_dssp ----CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCT
T ss_pred ----CCeEEEECCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCc
Confidence 4566666666666665 56888899999999999999999999999877664322 222233344558999998 7
Q ss_pred CcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-
Q 013008 320 GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL- 384 (451)
Q Consensus 320 G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~- 384 (451)
|+|+||+++++++++.+.......+++.++++++++.++|+ ..+++++ .+++++....+++.
T Consensus 236 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 312 (391)
T 3h14_A 236 GWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALD---CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDG 312 (391)
T ss_dssp TSCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCB
T ss_pred cceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCe
Confidence 99999999999998888655556778889999999988876 2222222 22333433223444
Q ss_pred ceeEEEEec---CChHHHHHHHHHC-CceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 385 GLIIGIEFD---VSATPVVDACRDS-GLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 385 G~~~~~~~~---~~~~~~~~~l~~~-Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
|+++++.+. .+..++.+.|+++ ||.+.|+.. .+.+|++++. +++++++++++|.+++++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 313 AFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp TTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHHhc
Confidence 467777773 3577899998876 999987531 3589997665 88999999999999998654
No 63
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.97 E-value=3e-30 Score=257.00 Aligned_cols=324 Identities=15% Similarity=0.087 Sum_probs=230.0
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~ 169 (451)
+|+++|||.+|.+ .+| .+|.+.+++.+++++....+.. +..+.+.++++++.+.++ .+++++++||++|+.
T Consensus 28 ~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 104 (388)
T 1j32_A 28 EGIDVCSFSAGEP--DFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEECCCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence 6788999999876 466 6899999999988653221111 123335666666665443 578999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-CCHHHHHHhcCCCCeE
Q 013008 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLIQPGKTA 248 (451)
Q Consensus 170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~a 248 (451)
.+++++. .++++|++.+|+||++....... +..... .+..+.. .+ .|+++|++++++ +++
T Consensus 105 ~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~---v~~~~~~---~~~~d~~~l~~~l~~-~~~ 165 (388)
T 1j32_A 105 NLMLAMI-----------EPGDEVIIPAPFWVSYPEMVKLA-EGTPVI---LPTTVET---QFKVSPEQIRQAITP-KTK 165 (388)
T ss_dssp HHHHHHC-----------CTTCEEEEESSCCTHHHHHHHHT-TCEEEE---ECCCGGG---TTCCCHHHHHHHCCT-TEE
T ss_pred HHHHHhc-----------CCCCEEEEcCCCChhHHHHHHHc-CCEEEE---ecCCccc---CCCCCHHHHHHhcCc-Cce
Confidence 9999764 15889999999999876543322 211110 1111100 01 279999999975 577
Q ss_pred EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc----cccc--ccCCCcceeeeccccc-CCc
Q 013008 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHE--HYGIFPDIMTLAKPLA-GGL 321 (451)
Q Consensus 249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~~~~--~~~~~pdi~t~sK~lg-~G~ 321 (451)
+|+++++++++|.+ ++++++++|+++|++||+++|+||+|+++.+.|.. .... .++..+++.++||.++ +|+
T Consensus 166 ~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 244 (388)
T 1j32_A 166 LLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGW 244 (388)
T ss_dssp EEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTT
T ss_pred EEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCccc
Confidence 77777777777764 67899999999999999999999999988665532 1111 1345567779999998 689
Q ss_pred ccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-ce
Q 013008 322 PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GL 386 (451)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~ 386 (451)
|+|++++++++++.+.......+++.++++++++.++|+.. .++.++ .++++|.+..+.+. |+
T Consensus 245 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 322 (388)
T 1j32_A 245 RVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS--QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAF 322 (388)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC--SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTT
T ss_pred ceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeE
Confidence 99999999999888765545667888999999999888742 222111 33445544444444 45
Q ss_pred eEEEEec---CChHHHHHHHHH-CCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 387 IIGIEFD---VSATPVVDACRD-SGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 387 ~~~~~~~---~~~~~~~~~l~~-~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
++++.+. .+..++.+.|++ +||.+.++. ..+.+|++++ ++++++++++++|.++++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 323 YMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp EECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 5566553 356789999986 799998863 1367999875 69999999999999998765
No 64
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.97 E-value=4.4e-31 Score=263.67 Aligned_cols=335 Identities=16% Similarity=0.047 Sum_probs=237.1
Q ss_pred CCceEEEeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC-CCCHHHHHHHHHHhhccC---
Q 013008 79 RAPVVLASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM-YYSIPQIELAKRLVACSF--- 154 (451)
Q Consensus 79 ~~p~~~~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~--- 154 (451)
+.|+....+.+.+++|.+|+++|||.+|.. .++ .+|.|.+++.++++....+... +..+.+.++++++.+.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~ 87 (396)
T 3jtx_A 11 PYPFARLHEAMQGISAPEGMEAVPLHIGEP--KHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLT 87 (396)
T ss_dssp SCHHHHHHHHTTTCCCCTTCCCEECSCCSC--CSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCC
T ss_pred CChHHHHHHHHHhhhhccCCCeEEeCCcCC--CCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 444444467777788899999999999875 454 6899999999988653322221 234457788888876654
Q ss_pred --CC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC-----ceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC-C
Q 013008 155 --AD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA-----TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-P 225 (451)
Q Consensus 155 --~e-~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~-----~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~ 225 (451)
.+ +|++++||++|+..+++++.. ++ +.|++.+|+||++.......+..... .+.. .
T Consensus 88 ~~~~~~i~~t~g~~~al~~~~~~~~~-----------~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~----v~~~~~ 152 (396)
T 3jtx_A 88 VDADNEILPVLGSREALFSFVQTVLN-----------PVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHF----ANCPAP 152 (396)
T ss_dssp CCTTTSEEEESSHHHHHHHHHHHHCC-----------C---CCCCEEEEEESCCHHHHHHHHHTTCEEEE----EECCTT
T ss_pred CCCCCeEEEcCCcHHHHHHHHHHHhC-----------CCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEE----eecCCC
Confidence 56 999999999999999997752 33 79999999999887654333321111 0110 1
Q ss_pred CeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc-cccccc--
Q 013008 226 GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG-YLWAHE-- 302 (451)
Q Consensus 226 ~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G-~~~~~~-- 302 (451)
+.. .|+++|++++.+ ++++|+++..++++|. +++.+.+++|+++|++||+++|+||+|+++.+.| ......
T Consensus 153 g~~----~d~~~l~~~~~~-~~~~v~l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 226 (396)
T 3jtx_A 153 SFN----PDWRSISEEVWK-RTKLVFVCSPNNPSGS-VLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQA 226 (396)
T ss_dssp TCC----CCGGGSCHHHHH-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHH
T ss_pred CCc----cCHHHHHHhhcc-CcEEEEEECCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhh
Confidence 111 167788887764 5666666555666665 5688889999999999999999999999987776 332221
Q ss_pred ------ccCCCcceeeeccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----
Q 013008 303 ------HYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----- 370 (451)
Q Consensus 303 ------~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----- 370 (451)
..+..+++.++||+++ +|+|+||+++++++++.+.......+++.|+++++++.++|+. ++++++
T Consensus 227 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~ 303 (396)
T 3jtx_A 227 AAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRLY 303 (396)
T ss_dssp HHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHHH
T ss_pred hhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHHH
Confidence 1455677789999987 5899999999999999886555556788899999999998873 222222
Q ss_pred ---------HHhCCCCcceecccceeEEEEec-CChHHHHHHHHH-CCceeeecC-----------CCCEEEEeCCCCCC
Q 013008 371 ---------KLARNPHVKDVRGLGLIIGIEFD-VSATPVVDACRD-SGLLVLTAG-----------KGNVVRLVPPLIIS 428 (451)
Q Consensus 371 ---------~~~~~~~~~~v~g~G~~~~~~~~-~~~~~~~~~l~~-~Gv~~~~~~-----------~~~~iri~~~~~~t 428 (451)
.++.+..+. ....|+++++.+. ....++++.|++ +||.+.|+. ..+.+|++++. +
T Consensus 304 ~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~ 380 (396)
T 3jtx_A 304 QEKFERVIPILQQVFDVK-LPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--D 380 (396)
T ss_dssp HHHHHHHHHHHTTTSCCC-CCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--C
T ss_pred HHHHHHHHHHHHhcCCcc-CCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--C
Confidence 122221111 2334778888885 367788998865 699998752 13689997654 9
Q ss_pred HHHHHHHHHHHHHHH
Q 013008 429 EQELDQAVEILCKTL 443 (451)
Q Consensus 429 ~e~i~~~l~~l~~~l 443 (451)
++++++++++|.+++
T Consensus 381 ~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 381 VATCVKAAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998865
No 65
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.97 E-value=2.6e-30 Score=259.78 Aligned_cols=327 Identities=13% Similarity=0.091 Sum_probs=222.0
Q ss_pred cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-ccc--CCCCCHHHHHHHHHHhhccC----C-CeEEecCCHHH
Q 013008 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVS--NMYYSIPQIELAKRLVACSF----A-DRVFFSNTGTE 166 (451)
Q Consensus 95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~--~~~~~~~~~~l~~~l~~~~~----~-e~v~~~~sG~e 166 (451)
.+|+++|||.++.. .+| .+|.+.+++.+++++.. +.+ .....+.+..+++++.+.++ . ++|++++||++
T Consensus 34 ~~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 34 RRGEDIIDLSMGNP--DGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp HTTCCCEECSSCCC--CSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred hcCCCEEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 46889999999875 566 78999999999886531 111 11122234455555544335 3 69999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCC
Q 013008 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK 246 (451)
Q Consensus 167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 246 (451)
|+..+++++. + ++++|++.+|+||++.......+.... . .+..+...+. .|+++|++++.+ +
T Consensus 111 a~~~~~~~~~---~--------~gd~Vl~~~p~~~~~~~~~~~~g~~~~-~---~~~~~~~~~~--~d~~~l~~~i~~-~ 172 (412)
T 2x5d_A 111 GLAHLMLATL---D--------HGDTILVPNPSYPIHIYGAVIAGAQVR-S---VPLVPGIDFF--NELERAIRESIP-K 172 (412)
T ss_dssp HHHHHHHHHC---C--------TTCEEEEEESCCHHHHHHHHHHTCEEE-E---EECSTTSCHH--HHHHHHHHTEES-C
T ss_pred HHHHHHHHhC---C--------CCCEEEEcCCCchhHHHHHHHcCCEEE-E---eecCCccCCC--CCHHHHHHhccc-C
Confidence 9999999764 1 578999999999998765443322111 0 1111100000 167899998874 4
Q ss_pred eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-cccccc----cCCCcceeeeccccc-CC
Q 013008 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEH----YGIFPDIMTLAKPLA-GG 320 (451)
Q Consensus 247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~----~~~~pdi~t~sK~lg-~G 320 (451)
+++|++...++++|. +++.+++++|+++|++||++||+||+|+++.+.|. ...... .+..+.+.++||.++ +|
T Consensus 173 ~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 173 PRMMILGFPSNPTAQ-CVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp CSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT
T ss_pred ceEEEECCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc
Confidence 555555433455564 56889999999999999999999999998866553 111111 234455668999998 78
Q ss_pred cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-c
Q 013008 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-G 385 (451)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G 385 (451)
+|+|++++++++++.+.......+++.|+++++++.++|+..+ ++.++ .++++ .+..+++. |
T Consensus 252 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g 328 (412)
T 2x5d_A 252 WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQ--QCVRDIARQYQQRRDVLVKGLREA-GWMVENPKAS 328 (412)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCS--HHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSBS
T ss_pred cceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCee
Confidence 9999999999999888654445578889999999999998432 22221 12222 22223444 6
Q ss_pred eeEEEEecC-----ChHHHHHHHHH-CCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 386 LIIGIEFDV-----SATPVVDACRD-SGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 386 ~~~~~~~~~-----~~~~~~~~l~~-~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
+++++.+.. +..++++.|++ +||++.++.. .+.+|++++. +++++++++++|.++++++..
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~~ 400 (412)
T 2x5d_A 329 MYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKAMFRADGL 400 (412)
T ss_dssp SEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcCC
Confidence 678888842 56789999876 6999987631 3689998775 899999999999999987653
No 66
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.97 E-value=3e-30 Score=260.70 Aligned_cols=323 Identities=15% Similarity=0.128 Sum_probs=230.0
Q ss_pred ecCCCEEEeeccCcccc-cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-------CCeEEecCCHH
Q 013008 94 DAEGREYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-------ADRVFFSNTGT 165 (451)
Q Consensus 94 d~~G~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~e~v~~~~sG~ 165 (451)
+.+|+++|||..|.+.. .-...+|.|++|+.+++++.... .+.+.....++.+.++++++ .++|++++||+
T Consensus 50 ~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~-~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t 128 (427)
T 3dyd_A 50 PNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN-GYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCS 128 (427)
T ss_dssp CCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS-SCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHH
T ss_pred ccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC-CCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcH
Confidence 45688999999998532 11247899999999998763211 11122224556666666554 67999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-------CCHHHH
Q 013008 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-------GNIEAT 238 (451)
Q Consensus 166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 238 (451)
+|++.+++++. .++++|++.+|+|+++.......+.. +..+++ -|+++|
T Consensus 129 ~al~~~~~~l~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l 184 (427)
T 3dyd_A 129 QAIDLCLAVLA-----------NPGQNILVPRPGFSLYKTLAESMGIE-------------VKLYNLLPEKSWEIDLKQL 184 (427)
T ss_dssp HHHHHHHHHHC-----------CTTCEEEEEESCCTHHHHHHHHTTCE-------------EEEEEEEGGGTTEECHHHH
T ss_pred HHHHHHHHHhc-----------CCCCEEEEcCCCchhHHHHHHHcCCE-------------EEEEecccccCCCCCHHHH
Confidence 99999999775 26889999999999876554333221 111111 189999
Q ss_pred HHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccccCCCccee---eec
Q 013008 239 RKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHYGIFPDIM---TLA 314 (451)
Q Consensus 239 e~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~~~~pdi~---t~s 314 (451)
++.++++ +++|+++..++++|. .++++++++|+++|++||+++|+||+|++|++.|..+ ....++..++++ ++|
T Consensus 185 ~~~l~~~-~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~s 262 (427)
T 3dyd_A 185 EYLIDEK-TACLIVNNPSNPCGS-VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLA 262 (427)
T ss_dssp HSSCCTT-EEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEEST
T ss_pred HHHhccC-CCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeecc
Confidence 9999764 555555544666665 6789999999999999999999999999998877533 344455555555 899
Q ss_pred cccc-CCccccccccc-------HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HH
Q 013008 315 KPLA-GGLPIGAALVT-------EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KL 372 (451)
Q Consensus 315 K~lg-~G~~iG~v~~~-------~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~ 372 (451)
|.++ +|+|+||++++ +++++.+.... ..+++.++++++++.++|+... .+++++ .+
T Consensus 263 K~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~a~~~~L~~~~-~~~~~~~~~~~~~~~~~l~~~L 340 (427)
T 3dyd_A 263 KRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLS-QRILGPCTIVQGALKSILCRTP-GEFYHNTLSFLKSNADLCYGAL 340 (427)
T ss_dssp TTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHH-HHHCCSCHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcCcceEEEEecCcchhhHHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9986 58999999987 46776664322 2367889999999999998532 222211 23
Q ss_pred hCCCCccee-cccceeEEEEec-------CChHHHHHHHH-HCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008 373 ARNPHVKDV-RGLGLIIGIEFD-------VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILC 440 (451)
Q Consensus 373 ~~~~~~~~v-~g~G~~~~~~~~-------~~~~~~~~~l~-~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~ 440 (451)
+++|.+..+ +..|+++++.++ ....++++.|+ ++||++.|+. ..+++|+++ .+++++|++++++|.
T Consensus 341 ~~~~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~--~~~~e~i~~~l~~l~ 418 (427)
T 3dyd_A 341 AAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI--TVPEVMMLEACSRIQ 418 (427)
T ss_dssp HHSTTEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES--CSCHHHHHHHHHHHH
T ss_pred hcCCCceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE--CCCHHHHHHHHHHHH
Confidence 445655544 344677777774 34678888886 7899999863 247899975 479999999999999
Q ss_pred HHHHHHh
Q 013008 441 KTLPVLD 447 (451)
Q Consensus 441 ~~l~~~~ 447 (451)
+++++++
T Consensus 419 ~~l~~~~ 425 (427)
T 3dyd_A 419 EFCEQHY 425 (427)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9998764
No 67
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.3e-31 Score=266.37 Aligned_cols=323 Identities=18% Similarity=0.131 Sum_probs=227.3
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-cccC--CCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEAN 168 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~--~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~ 168 (451)
.|+++|||..|.+ .++ .+|.+.+++.+++++.. +.+. .+..+.+.++++++.+.++ .++|++|+||++|+
T Consensus 55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 4668999999875 455 78999999999987521 1111 1123446677777766554 46899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCe-------eEeeC-CCHHHHHH
Q 013008 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGV-------NFVEY-GNIEATRK 240 (451)
Q Consensus 169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~d~~~le~ 240 (451)
+.+++++. .++++||+.+|+||++.......+.... . .+..+.. ....+ .|+++|++
T Consensus 132 ~~~~~~l~-----------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-~---v~~~~~~~~~~~~~~~~~~~~d~~~l~~ 196 (447)
T 3b46_A 132 LSCLMGLL-----------NAGDEVIVFEPFFDQYIPNIELCGGKVV-Y---VPINPPKELDQRNTRGEEWTIDFEQFEK 196 (447)
T ss_dssp HHHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEE-E---EEEECCGGGGTSCBCSTTSEECHHHHHT
T ss_pred HHHHHHHc-----------CCCCEEEEeCCCchhHHHHHHHcCCEEE-E---EeCCCccccccccccccCcccCHHHHHH
Confidence 99999764 2689999999999998765433322111 1 0110100 00001 28999999
Q ss_pred hcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc---ccc--cccCCCcceeeecc
Q 013008 241 LIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL---WAH--EHYGIFPDIMTLAK 315 (451)
Q Consensus 241 ~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~---~~~--~~~~~~pdi~t~sK 315 (451)
++.+ ++++|++++.++++|. +++.+++++|+++|++||++||+||+|+++.+.|.. ... +.++..+++.++||
T Consensus 197 ~l~~-~~~~v~l~~p~nptG~-~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK 274 (447)
T 3b46_A 197 AITS-KTKAVIINTPHNPIGK-VFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGK 274 (447)
T ss_dssp TCCT-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHH
T ss_pred hhcc-CCeEEEEeCCCCCCCc-ccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCch
Confidence 9974 6778887777777775 468999999999999999999999999998766531 112 13466777889999
Q ss_pred ccc-CCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcc
Q 013008 316 PLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVK 379 (451)
Q Consensus 316 ~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~ 379 (451)
.++ +|+|+||+++ ++++++.+....+..+++.+++.++++.++|+....++++++ .++.+. +.
T Consensus 275 ~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~ 353 (447)
T 3b46_A 275 SFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELG-LP 353 (447)
T ss_dssp HTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHT-CC
T ss_pred hcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCC-Ce
Confidence 998 6999999999 999998886544556788899999999999986522222221 122222 22
Q ss_pred ee-cccceeEEEEecC-----------------ChHHHHHHHH-HCCceeeecCC----------CCEEEEeCCCCCCHH
Q 013008 380 DV-RGLGLIIGIEFDV-----------------SATPVVDACR-DSGLLVLTAGK----------GNVVRLVPPLIISEQ 430 (451)
Q Consensus 380 ~v-~g~G~~~~~~~~~-----------------~~~~~~~~l~-~~Gv~~~~~~~----------~~~iri~~~~~~t~e 430 (451)
.+ +..|+++++++.. +..++++.|+ ++||++.|+.. .+.+|++++ .++|
T Consensus 354 ~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~~~e 431 (447)
T 3b46_A 354 YTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC--KDDA 431 (447)
T ss_dssp EECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC--SCHH
T ss_pred ecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe--CCHH
Confidence 22 3457888888742 2457888887 58999987630 368999776 4899
Q ss_pred HHHHHHHHHHH
Q 013008 431 ELDQAVEILCK 441 (451)
Q Consensus 431 ~i~~~l~~l~~ 441 (451)
+|++++++|.+
T Consensus 432 ~l~~~~~~l~~ 442 (447)
T 3b46_A 432 YLENAVERLKL 442 (447)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHHHH
Confidence 99999999976
No 68
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.97 E-value=3.1e-30 Score=254.10 Aligned_cols=324 Identities=15% Similarity=0.140 Sum_probs=220.5
Q ss_pred ceEEEeecccEEEe-cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCe
Q 013008 81 PVVLASGKGCKLYD-AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADR 157 (451)
Q Consensus 81 p~~~~~~~G~~l~d-~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~ 157 (451)
++.+.+|.+.+.++ .+|+++|||.+|.. +++ .+|++.+++.+++++... ++.....+++++++++++ .++
T Consensus 8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~l~~~la~~~~~~~~~ 80 (361)
T 3ftb_A 8 GDLMIHGGDIYTEGVFKGRELLDYSSNIN--PLG-IPKSFLNNIDEGIKNLGV----YPDVNYRRLNKSIENYLKLKDIG 80 (361)
T ss_dssp --------------------CEETTCCCC--TTC-SCHHHHTTHHHHHHGGGS----CCCTTCHHHHHHHHHHHTCCSCE
T ss_pred CccccCCCCHHHHhhcCCCCEEEecCCCC--CCC-CCHHHHHHHHHHHHHhcC----CCCccHHHHHHHHHHHhCCCcce
Confidence 34555555555444 48999999999865 455 689999999999876422 233345788888888887 679
Q ss_pred EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHH
Q 013008 158 VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEA 237 (451)
Q Consensus 158 v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 237 (451)
+++++||++|++.+++++ ++|++.+|+||++.......+..... .+..++. .-|+++
T Consensus 81 i~~~~g~t~al~~~~~~~---------------d~vi~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~----~~~~~~ 137 (361)
T 3ftb_A 81 IVLGNGASEIIELSISLF---------------EKILIIVPSYAEYEINAKKHGVSVVF----SYLDENM----CIDYED 137 (361)
T ss_dssp EEEESSHHHHHHHHHTTC---------------SEEEEEESCCTHHHHHHHHTTCEEEE----EECCTTS----CCCHHH
T ss_pred EEEcCCHHHHHHHHHHHc---------------CcEEEecCChHHHHHHHHHcCCeEEE----eecCccc----CCCHHH
Confidence 999999999999998843 47999999999876554433221110 1111110 116799
Q ss_pred HHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcc---eeeec
Q 013008 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD---IMTLA 314 (451)
Q Consensus 238 le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pd---i~t~s 314 (451)
|++++++ +++|+++..++++|. +++.+++++|+++|++||+++|+||+|+++.+.+........+..++ +.++|
T Consensus 138 l~~~l~~--~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 214 (361)
T 3ftb_A 138 IISKIDD--VDSVIIGNPNNPNGG-LINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMT 214 (361)
T ss_dssp HHHHTTT--CSEEEEETTBTTTTB-CCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESS
T ss_pred HHHhccC--CCEEEEeCCCCCCCC-CCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeCh
Confidence 9999976 444444444555554 56888999999999999999999999998866421222222232233 34789
Q ss_pred cccc-CCccccccc-ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCc
Q 013008 315 KPLA-GGLPIGAAL-VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHV 378 (451)
Q Consensus 315 K~lg-~G~~iG~v~-~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~ 378 (451)
|.++ +|+++|+++ +++++++.+... ..+++.|+++++++.++|+. .+++++ .++++|.+
T Consensus 215 K~~~~~G~r~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 289 (361)
T 3ftb_A 215 KFFAMPGIRFGYGITNNKEIAAKIKAK--QNPWNINCFAEMAAINCLKD---TNYIEESLLWIKKERKRFIEELNKIGFI 289 (361)
T ss_dssp STTSCGGGCCEEEEESCHHHHHHHHTT--SCTTCSCHHHHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHHHHSSSE
T ss_pred hhcCCCCcceeEEEeCCHHHHHHHHhh--CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9998 689999998 899999988754 34678899999999888762 232222 33456666
Q ss_pred c-eecccceeEEEEecC-ChHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 379 K-DVRGLGLIIGIEFDV-SATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 379 ~-~v~g~G~~~~~~~~~-~~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
. ..++.|.++++.+.. +..++.+.|.++||.+.++.. .+.+|++++ ++++++++++.|+++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 290 KRVFSPHANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp EEEECCSSSEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred ceecCCCCeEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence 6 677889999988853 678899999999999998631 368999865 788888888888877653
No 69
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.97 E-value=1e-30 Score=259.19 Aligned_cols=315 Identities=11% Similarity=-0.008 Sum_probs=224.3
Q ss_pred cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHH
Q 013008 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (451)
Q Consensus 95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~ 169 (451)
.+| ++|||.+|.. .++ .+|.|.+++.+++.....+.. .+..+.+.++++++.+.++ .+++++++||++|+.
T Consensus 21 ~~g-~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~ 96 (376)
T 3ezs_A 21 PKK-RGLDLGIGEP--QFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF 96 (376)
T ss_dssp CSS-CCCBCSSCCC--CSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred ccC-CEEEeCCCCC--CCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence 367 8999999875 465 689999999988744322211 1223446777777766554 579999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCC--CceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHH----HHHHhcC
Q 013008 170 AAIKFARKFQRHSNPDSKEP--ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIE----ATRKLIQ 243 (451)
Q Consensus 170 ~al~~a~~~~~~~~~~~~~~--~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~le~~l~ 243 (451)
.+++++.. + +++|++.+|+||++.......+.. +..++.++-+ +|++.+.
T Consensus 97 ~~~~~~~~-----------~~~gd~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~l~~~~~ 152 (376)
T 3ezs_A 97 NFPSFVLF-----------DYQNPTIAYPNPFYQIYEGAAKFIKAK-------------SLLMPLTKENDFTPSLNEKEL 152 (376)
T ss_dssp HHHHHHTT-----------TCSSCEEEEEESCCTHHHHHHHHTTCE-------------EEEEECCGGGTSCCCCCHHHH
T ss_pred HHHHHHcC-----------CCCCCEEEEecCCcHhHHHHHHHcCCE-------------EEEcccCCCCCcchhHHhhhc
Confidence 99997652 5 789999999999877554333221 1122221110 3444443
Q ss_pred CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccc---------ccCCCcceeeec
Q 013008 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHE---------HYGIFPDIMTLA 314 (451)
Q Consensus 244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~---------~~~~~pdi~t~s 314 (451)
+ ++++|+++.+++++|. .++.+++++|+++|++||++||+||+|++|.+.|...... ..+..+.+.++|
T Consensus 153 ~-~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 230 (376)
T 3ezs_A 153 Q-EVDLVILNSPNNPTGR-TLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLS 230 (376)
T ss_dssp H-HCSEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEEST
T ss_pred c-CCCEEEEcCCCCCcCC-CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecch
Confidence 3 3455555444555665 5688899999999999999999999999987766433221 345556677999
Q ss_pred cccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------HHhCCCCcceec
Q 013008 315 KPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------KLARNPHVKDVR 382 (451)
Q Consensus 315 K~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~~~~~~~~~~v~ 382 (451)
|.+| +|+|+||+++++++++.+.......+++.|+++++++.++|+. .+++++ +.+.+..+. .+
T Consensus 231 K~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~-~~ 306 (376)
T 3ezs_A 231 KRSSAPGLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFKNTL-IY 306 (376)
T ss_dssp TTTTCGGGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHSTTCC-CC
T ss_pred hccCCccceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhcCCC-CC
Confidence 9997 6899999999999999887655566788999999999999874 222222 222222222 45
Q ss_pred ccceeEEEEecCChHHHHHHHHH-CCceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 383 GLGLIIGIEFDVSATPVVDACRD-SGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 383 g~G~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
..|.++++.+. ...++.+.|++ +||++.|+. ..+.+|++++ .+++++++++++|.+++++.
T Consensus 307 ~~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~~ 375 (376)
T 3ezs_A 307 PYSFYVYLPVQ-NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALV--YDTPLLEKPLEIIETYRENH 375 (376)
T ss_dssp SBSSEEEEECS-CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECC--SCHHHHHHHHHHHHHHHCC-
T ss_pred CcceEEEEECC-CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHHHhc
Confidence 66888888876 67889999998 899998752 2378999766 49999999999999988643
No 70
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.97 E-value=3.4e-30 Score=254.29 Aligned_cols=304 Identities=18% Similarity=0.166 Sum_probs=224.7
Q ss_pred CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHH
Q 013008 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKF 174 (451)
Q Consensus 97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~ 174 (451)
++++|||.+|.+ +++ .+|++.+++.++++.. ..++.....+++++++++++ .+++++++||++|++.++++
T Consensus 31 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~----~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~ 103 (363)
T 3ffh_A 31 LTKITKLSSNEN--PLG-TSKKVAAIQANSSVET----EIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRV 103 (363)
T ss_dssp CSCCEECSSCSC--TTC-CCHHHHHHHHTCBSCC----CBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHH
T ss_pred CCceEEccCCCC--CCC-CCHHHHHHHHHHHHHh----hcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHH
Confidence 357899999865 455 7899999998876542 22333446788888988887 67999999999999999997
Q ss_pred HHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCCCeEE
Q 013008 175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAA 249 (451)
Q Consensus 175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~aa 249 (451)
+. .++++|++.+|+|+++.......+. .+..++.+ |+++|++.+.+ ++++
T Consensus 104 ~~-----------~~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~d~~~l~~~i~~-~~~~ 158 (363)
T 3ffh_A 104 LL-----------DTTTNTVMATPTFVQYRQNALIEGA-------------EVREIPLLQDGEHDLEGMLNAIDE-KTTI 158 (363)
T ss_dssp HC-----------STTCEEEEEESSCHHHHHHHHHHTC-------------EEEEEECCTTSCCCHHHHHHHCCT-TEEE
T ss_pred Hc-----------cCCCEEEEcCCChHHHHHHHHHcCC-------------EEEEecCCCCCCcCHHHHHHhccc-CCCE
Confidence 64 1588999999999987654433321 12233333 89999999975 5777
Q ss_pred EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcc----eeeeccccc-CCcccc
Q 013008 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPD----IMTLAKPLA-GGLPIG 324 (451)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pd----i~t~sK~lg-~G~~iG 324 (451)
|+++.+++++|.+ .+.+.+.+|++.|++ |+++|+||+|++|++ |...........+| +.++||.++ +|+|+|
T Consensus 159 v~~~~p~nptG~~-~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G 235 (363)
T 3ffh_A 159 VWICNPNNPTGNY-IELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVG 235 (363)
T ss_dssp EEEESSCTTTCCC-CCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCE
T ss_pred EEEeCCCCCcCCC-cCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhcee
Confidence 7777777777764 577777777777777 999999999998876 54322222211233 568999998 789999
Q ss_pred cccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEE
Q 013008 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGI 390 (451)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~ 390 (451)
++++++++++.+.... .+++.|+++++++.++|+. .+++++ .+++++.+..+++.|.++++
T Consensus 236 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~~~~~ 310 (363)
T 3ffh_A 236 YGIADKEIIRQLNIVR--PPFNTTSIGQKLAIEAIKD---QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVLI 310 (363)
T ss_dssp EEEECHHHHHHHHHTC--CSCCCBHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSSEEEE
T ss_pred eeecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCeEEEE
Confidence 9999999999886543 3788999999999999962 222221 23344455556778889888
Q ss_pred EecCChHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 391 EFDVSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 391 ~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
.+..+..++.+.|.++||.+.++.. ++.+|++++ +++++++++++|++++
T Consensus 311 ~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 311 DLGIEAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp ECSSCHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred ECCCCHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 8865788899999999999998642 478999866 9999999999998753
No 71
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.97 E-value=2.6e-30 Score=255.83 Aligned_cols=311 Identities=12% Similarity=0.045 Sum_probs=220.4
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~ 169 (451)
+|+++|||.++.+ .+|+ +|.+.+++.+++++....+.. ...+.+.++++++.+.++ .+++++++||++|+.
T Consensus 27 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGEP--DFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCSC--SSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 4778999998876 5776 799999999998763222111 122335566666655432 578999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEE
Q 013008 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249 (451)
Q Consensus 170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aa 249 (451)
.+++++. .++++|++.+|+||++.......+ ..+..++ .|+++|++++++ ++++
T Consensus 104 ~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~v~-~d~~~l~~~l~~-~~~~ 157 (370)
T 2z61_A 104 FALSSII-----------DDGDEVLIQNPCYPCYKNFIRFLG-------------AKPVFCD-FTVESLEEALSD-KTKA 157 (370)
T ss_dssp HHHHHHC-----------CTTCEEEEESSCCTHHHHHHHHTT-------------CEEEEEC-SSHHHHHHHCCS-SEEE
T ss_pred HHHHHhc-----------CCCCEEEEeCCCchhHHHHHHHcC-------------CEEEEeC-CCHHHHHHhccc-CceE
Confidence 9999764 157899999999998765432221 1233344 589999999975 5777
Q ss_pred EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccccc----CCCcceeeeccccc-CCcccc
Q 013008 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY----GIFPDIMTLAKPLA-GGLPIG 324 (451)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~----~~~pdi~t~sK~lg-~G~~iG 324 (451)
|+++++++++|.+.+ ++ |.++|++||+++|+||+|+++.+.|.......+ +....+.++||.++ +|+|+|
T Consensus 158 v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 232 (370)
T 2z61_A 158 IIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIG 232 (370)
T ss_dssp EEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCE
T ss_pred EEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEE
Confidence 777777777777655 34 999999999999999999988665543222222 22333558999998 689999
Q ss_pred cccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-cceeEE
Q 013008 325 AALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LGLIIG 389 (451)
Q Consensus 325 ~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~~~ 389 (451)
++++++++++.+.......+++.|+++++++.++|+.+. +++.++ .++++. +..+.+ .|++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~ 310 (370)
T 2z61_A 233 YVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKET-EREINSMIKEFDRRRRLVLKYVKDFG-WEVNNPIGAYYVF 310 (370)
T ss_dssp EEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCBTTEEC
T ss_pred EEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCcceEEE
Confidence 999999999888655455667889999999888886410 121111 222222 222333 366667
Q ss_pred EEecCChHHHHHHHH-HCCceeeecC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008 390 IEFDVSATPVVDACR-DSGLLVLTAG-----KGNVVRLVPPLIISEQELDQAVEILCKTLP 444 (451)
Q Consensus 390 ~~~~~~~~~~~~~l~-~~Gv~~~~~~-----~~~~iri~~~~~~t~e~i~~~l~~l~~~l~ 444 (451)
+.+..+..++.+.|+ ++||.+.++. ..+.+|++++ ++++++++++++|.++++
T Consensus 311 ~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 311 PNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp CBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred EecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 676436778999998 7899998852 1367999877 699999999999998874
No 72
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.97 E-value=1.7e-30 Score=256.69 Aligned_cols=310 Identities=15% Similarity=0.175 Sum_probs=219.7
Q ss_pred ecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHH
Q 013008 94 DAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAA 171 (451)
Q Consensus 94 d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~a 171 (451)
+.+|+++|||.++.. ++| .+|++.+++.+++++... ++.....+++++++++++ .++|++++||++|+..+
T Consensus 20 ~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~ 92 (364)
T 1lc5_A 20 GISPDQLLDFSANIN--PLG-MPVSVKRALIDNLDCIER----YPDADYFHLHQALARHHQVPASWILAGNGETESIFTV 92 (364)
T ss_dssp TSCGGGSEECSSCCC--TTC-CCHHHHHHHHHTGGGGGS----CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH
T ss_pred CCCccceEEeccccC--CCC-CCHHHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHH
Confidence 457889999998874 577 789999999998865321 222235678888888887 57999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----C-HHHHHHhcCCC
Q 013008 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----N-IEATRKLIQPG 245 (451)
Q Consensus 172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d-~~~le~~l~~~ 245 (451)
++++ . +++|++.+|+||++.......+.. +..+|.+ + ++++.+.+.+
T Consensus 93 ~~~~----~---------gd~vl~~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~l~~~~~~~~~- 145 (364)
T 1lc5_A 93 ASGL----K---------PRRAMIVTPGFAEYGRALAQSGCE-------------IRRWSLREADGWQLTDAILEALTP- 145 (364)
T ss_dssp HHHH----C---------CSEEEEEESCCTHHHHHHHHTTCE-------------EEEEECCGGGTTCCCTTHHHHCCT-
T ss_pred HHHc----C---------CCeEEEeCCCcHHHHHHHHHcCCe-------------EEEEeCCcccccchhHHHHHhccC-
Confidence 9976 1 478999999999987654433211 1112211 1 2434445543
Q ss_pred CeEEEE-EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-c-ccccCCCcceeeeccccc-CCc
Q 013008 246 KTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-A-HEHYGIFPDIMTLAKPLA-GGL 321 (451)
Q Consensus 246 ~~aavi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~-~~~~~~~pdi~t~sK~lg-~G~ 321 (451)
++++|+ ++| ++++|. +++.+++++|+++|++||+++|+||+|+++++.+... . .+.++..+.+.++||.++ +|+
T Consensus 146 ~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 223 (364)
T 1lc5_A 146 DLDCLFLCTP-NNPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGL 223 (364)
T ss_dssp TCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTT
T ss_pred CCCEEEEeCC-CCCCCC-CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCcc
Confidence 445444 566 455564 5789999999999999999999999999876544321 1 122334455668999998 789
Q ss_pred cccccc-ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccce
Q 013008 322 PIGAAL-VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGL 386 (451)
Q Consensus 322 ~iG~v~-~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~ 386 (451)
|+|+++ +++++++.+... ..+++.|+++++++.++|+. .+++++ .++++|.+...++.|.
T Consensus 224 r~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~ 298 (364)
T 1lc5_A 224 RLGYLVNSDDAAMARMRRQ--QMPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRAN 298 (364)
T ss_dssp CCEEEECCCHHHHHHHHHH--SCTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSS
T ss_pred ceEEEEECCHHHHHHHHHh--CCCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCe
Confidence 999999 999998887643 24678899999998888763 222221 3345565555667788
Q ss_pred eEEEEecCChHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 387 IIGIEFDVSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 387 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
++++.+.....++.+.|.++||.+.++.. ++++|+++. ++++++++++.|++++++++
T Consensus 299 ~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 299 YLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp EEEEEESCTTCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHC----
T ss_pred EEEEECCCcHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC---CHHHHHHHHHHHHHHhhccc
Confidence 88888854455788999999999988641 368999753 68899999999999887653
No 73
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.97 E-value=9.4e-31 Score=259.62 Aligned_cols=316 Identities=13% Similarity=0.071 Sum_probs=224.0
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-HHHHHHHHHHhhcc----CC----C-eEEecCCHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-IPQIELAKRLVACS----FA----D-RVFFSNTGT 165 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~----~~----e-~v~~~~sG~ 165 (451)
+|+++|||.+|.+ .+| .+|.+.+++.+++++.. ...++. ....++.+.+++++ +. + +|++++||+
T Consensus 23 ~g~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~--~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~ 97 (376)
T 2dou_A 23 RGVGLIDLSIGST--DLP-PPEAPLKALAEALNDPT--TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQ 97 (376)
T ss_dssp TTCCCEECSSCCC--CCC-CCHHHHHHHHHHTTCGG--GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHH
T ss_pred cCCCEEeccCCCC--CCC-CCHHHHHHHHHHHhCCC--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcH
Confidence 5888999999876 577 58999999999886521 122333 23566666666655 52 4 899999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC
Q 013008 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245 (451)
Q Consensus 166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 245 (451)
+|++.+++++. .++++|++.+|+||++.......+.... . .+...+.. .|+++|++.+. .
T Consensus 98 ~a~~~~~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~g~~~~-~---~~~~~~~~----~d~~~l~~~l~-~ 157 (376)
T 2dou_A 98 EGLAHLLLALT-----------EPEDLLLLPEVAYPSYFGAARVASLRTF-L---IPLREDGL----ADLKAVPEGVW-R 157 (376)
T ss_dssp HHHHHHHHHHC-----------CTTCEEEEESSCCHHHHHHHHHTTCEEE-E---ECBCTTSS----BCGGGSCHHHH-H
T ss_pred HHHHHHHHHhc-----------CCCCEEEECCCCcHhHHHHHHHcCCEEE-E---eeCCCCCC----CCHHHHHHhhc-c
Confidence 99999999764 1578999999999998765443322111 1 11111111 26778877775 3
Q ss_pred CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-cccc---cCCCcceeeeccccc-CC
Q 013008 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEH---YGIFPDIMTLAKPLA-GG 320 (451)
Q Consensus 246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~---~~~~pdi~t~sK~lg-~G 320 (451)
++++|+++..++++|. +++.+++++|+++|++||+++|+||+|+++.+.|... .... .+..+++.++||.++ +|
T Consensus 158 ~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 236 (376)
T 2dou_A 158 EAKVLLLNYPNNPTGA-VADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAG 236 (376)
T ss_dssp HEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGG
T ss_pred CceEEEECCCCCCcCc-cCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChh
Confidence 5677777655566665 5689999999999999999999999999886655321 1222 233455668999998 68
Q ss_pred cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-cc
Q 013008 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LG 385 (451)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G 385 (451)
+|+|++++++++++.+.......+++.|+++++++.++|+.. ++++++ .++++ +..+++ .|
T Consensus 237 ~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~ 312 (376)
T 2dou_A 237 FRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV--LSLLPPRAT 312 (376)
T ss_dssp GCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBS
T ss_pred heeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCee
Confidence 999999999999988865444556778999999999888642 222222 22333 333334 46
Q ss_pred eeEEEEec--CChHHHHHHHHHCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 386 LIIGIEFD--VSATPVVDACRDSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 386 ~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
+++++.+. .+..++.+.|+++||++.++.. .+.+|++++. +++++++++++|++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 313 MYLWGRLPEGVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 67888874 3467899999999999987631 3689998764 8999999999998765
No 74
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.97 E-value=2.3e-30 Score=261.99 Aligned_cols=331 Identities=11% Similarity=0.095 Sum_probs=233.1
Q ss_pred eecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-cccCCC--CCHHHHHHHHHHhhccC----CCeE
Q 013008 86 SGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSNMY--YSIPQIELAKRLVACSF----ADRV 158 (451)
Q Consensus 86 ~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~--~~~~~~~l~~~l~~~~~----~e~v 158 (451)
......+++.+|+++|||.+|.+ .++ .+|+|.+++.+++.+.. ..+... ..+.+.++++.+.+.++ .++|
T Consensus 32 ~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i 108 (437)
T 3g0t_A 32 VALVTNLEKATGTKFCRMEMGVP--GLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARAC 108 (437)
T ss_dssp HHHHHHHHHHHTCCCEECCCCSC--CSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHHHHHHHHhcCCCEEeccCcCC--CCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccE
Confidence 34445566778999999999986 454 78999999999987522 211111 12335555555554432 6799
Q ss_pred EecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc--eEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC---
Q 013008 159 FFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT--EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG--- 233 (451)
Q Consensus 159 ~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~--~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 233 (451)
++|+||++|+..+++++..+ + +++ +|++.+|+|+++.......+.. +..++.+
T Consensus 109 ~~t~g~t~al~~~~~~l~~~-~--------~gd~~~Vl~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~ 166 (437)
T 3g0t_A 109 VPTVGSMQGCFVSFLVANRT-H--------KNREYGTLFIDPGFNLNKLQCRILGQK-------------FESFDLFEYR 166 (437)
T ss_dssp EEESHHHHHHHHHHHHHTTS-C--------TTCSCCEEEEESCCHHHHHHHHHHTCC-------------CEEEEGGGGC
T ss_pred EEeCCHHHHHHHHHHHHhcC-C--------CCCccEEEEeCCCcHhHHHHHHHcCCE-------------EEEEeecCCC
Confidence 99999999999999976410 1 578 8999999999876554433221 2222221
Q ss_pred ---CHHHHHHhcCCCCeEEEE-EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc---------cc
Q 013008 234 ---NIEATRKLIQPGKTAAVF-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL---------WA 300 (451)
Q Consensus 234 ---d~~~le~~l~~~~~aavi-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~---------~~ 300 (451)
|+++|+++++..++++|+ +.| ++++|. +++.+.+++|+++|++||++||+||+|+++.+.+.. ..
T Consensus 167 ~~~d~~~l~~~l~~~~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 244 (437)
T 3g0t_A 167 GEKLREKLESYLQTGQFCSIIYSNP-NNPTWQ-CMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPS 244 (437)
T ss_dssp TTHHHHHHHHHHTTTCCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCC
T ss_pred CccCHHHHHHHHhcCCceEEEEeCC-CCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhc
Confidence 789999999533455554 455 555564 568888999999999999999999999886544321 12
Q ss_pred ccc-cCCCcceeeeccccc-CCcccccccccHHHHh-h-----------------ccCCCccCCCCCcHHHHHHHHHHHH
Q 013008 301 HEH-YGIFPDIMTLAKPLA-GGLPIGAALVTEKVAS-A-----------------INYGDHGSTFAGSPLVCNAAIAVLD 360 (451)
Q Consensus 301 ~~~-~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~-~-----------------~~~~~~~~t~~~~~~~~aaa~aal~ 360 (451)
... .+....+.++||.++ +|+++|++++++++++ . +.......+++.++++++++.++|+
T Consensus 245 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 324 (437)
T 3g0t_A 245 VANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLK 324 (437)
T ss_dssp GGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHH
T ss_pred cCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHh
Confidence 211 333344668999999 7899999999999998 7 6544445577889999999999998
Q ss_pred HhcC-----hHHHHH----------HHhCCCCccee-------c-ccceeEEEEec-CChHHHHHHHHHCCceeeecCC-
Q 013008 361 KISN-----PAFLAS----------KLARNPHVKDV-------R-GLGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK- 415 (451)
Q Consensus 361 ~~~~-----~~~~~~----------~~~~~~~~~~v-------~-g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~- 415 (451)
.... +...++ .++++ .+... + ..|.++++.+. .+..++.+.|.++||.+.++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~ 403 (437)
T 3g0t_A 325 ACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTT 403 (437)
T ss_dssp HHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHTTEECEESTTT
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHcCeEEeecccc
Confidence 6532 122222 22333 23333 4 56788888884 5678899999999999998742
Q ss_pred ----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 416 ----GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 416 ----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
++.+|++++.. +++++++++++|.+++++
T Consensus 404 ~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 404 GSKRNEAMRICTSLL-PESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp TCCCTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence 15799998844 999999999999998753
No 75
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.97 E-value=9.2e-30 Score=253.57 Aligned_cols=324 Identities=12% Similarity=0.085 Sum_probs=224.8
Q ss_pred CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CCe-EEecCCHHHHHHH
Q 013008 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADR-VFFSNTGTEANEA 170 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e~-v~~~~sG~eA~~~ 170 (451)
.++|||.++.. .+| .+|++.+++.+++++....+.. ...+.+.++++++.+.++ .++ +++++||++|+..
T Consensus 26 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 26 KDVISLGIGEP--DFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SSCEECCCCSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred cCeEecCCCCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 35789988865 466 6899999999998763222111 122335566666655444 578 9999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-CCHHHHHHhcCCCCeEE
Q 013008 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLIQPGKTAA 249 (451)
Q Consensus 171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~aa 249 (451)
+++++. .++++|++.+|+||++.......+ ..... .+..++. .+ -|+++|++++++ ++++
T Consensus 103 ~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~g-~~~~~---v~~~~~~---~~~~d~~~l~~~l~~-~~~~ 163 (389)
T 1gd9_A 103 GLSAFL-----------KDGEEVLIPTPAFVSYAPAVILAG-GKPVE---VPTYEED---EFRLNVDELKKYVTD-KTRA 163 (389)
T ss_dssp HHTTTC-----------CTTCEEEEEESCCTTHHHHHHHHT-CEEEE---EECCGGG---TTCCCHHHHHHHCCT-TEEE
T ss_pred HHHHhC-----------CCCCEEEEcCCCchhHHHHHHHCC-CEEEE---eccCCcc---CCCCCHHHHHHhcCc-CceE
Confidence 998653 158899999999999865443322 11110 1111100 01 189999999975 5777
Q ss_pred EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-ccccccc-CC-Ccc--eeeeccccc-CCccc
Q 013008 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHY-GI-FPD--IMTLAKPLA-GGLPI 323 (451)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~-~~-~pd--i~t~sK~lg-~G~~i 323 (451)
|+++++++++|. .++.+++++|+++|++||+++|+||+|+++.+.|. ......+ +. ..| +.++||.++ +|+|+
T Consensus 164 v~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 242 (389)
T 1gd9_A 164 LIINSPCNPTGA-VLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRL 242 (389)
T ss_dssp EEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCC
T ss_pred EEEECCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccce
Confidence 777666666675 56889999999999999999999999998876654 2222222 21 234 458999998 68999
Q ss_pred ccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecc-cceeE
Q 013008 324 GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRG-LGLII 388 (451)
Q Consensus 324 G~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~~ 388 (451)
|++++++++++.+.......+++.++++++++.++|+....+.+.++ .++++. +..+.+ .|+++
T Consensus 243 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~ 321 (389)
T 1gd9_A 243 GFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMG-LPTVKPKGAFYI 321 (389)
T ss_dssp EEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCBTTEE
T ss_pred EEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCeeeEE
Confidence 99999999998886555556788899999999888874322112221 122222 222333 35667
Q ss_pred EEEec---CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 389 GIEFD---VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 389 ~~~~~---~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
++.+. .+..++.+.|+ ++||.+.++.. .+.+|++++. +++++++++++|.+++++.+
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 322 FPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEEAMDRMERVLKERK 387 (389)
T ss_dssp CCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS--CHHHHHHHHHHHHHHHHHTT
T ss_pred EEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhcc
Confidence 77763 35778999998 89999987631 3679998764 89999999999999987654
No 76
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=1.7e-29 Score=251.99 Aligned_cols=322 Identities=17% Similarity=0.144 Sum_probs=222.7
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~ 169 (451)
.|+++|||.++.+ .+|+ +|.+.+++.+++++....+.. ...+.+.++++++.+.++ .+++++++||++|+.
T Consensus 39 ~g~~~i~l~~~~~--~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGEP--DFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSSC--SSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCCC--CCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 4778999998876 4664 799999999988763221111 122335555555554334 579999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-CCHHHHHHhcCCCCeE
Q 013008 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLIQPGKTA 248 (451)
Q Consensus 170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~a 248 (451)
.+++++. .++++|++.+|+|+++....... +..... .+..++. .+ -|+++|++++++ +++
T Consensus 116 ~~~~~l~-----------~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~---v~~~~~~---~~~~d~~~l~~~l~~-~~~ 176 (389)
T 1o4s_A 116 NAFMALL-----------DPGDEVIVFSPVWVSYIPQIILA-GGTVNV---VETFMSK---NFQPSLEEVEGLLVG-KTK 176 (389)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHT-TCEEEE---EECCGGG---TTCCCHHHHHHTCCT-TEE
T ss_pred HHHHHhC-----------CCCCEEEEcCCCchhHHHHHHHc-CCEEEE---EecCCcc---CCCCCHHHHHHhccc-Cce
Confidence 9999763 15889999999999976544322 211100 0111100 01 179999999975 577
Q ss_pred EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccccc----CCCcceeeeccccc-CCccc
Q 013008 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY----GIFPDIMTLAKPLA-GGLPI 323 (451)
Q Consensus 249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~----~~~pdi~t~sK~lg-~G~~i 323 (451)
+|+++.+++++|. .++++++++|+++|++||+++|+||+|+++.+.|.......+ +....+.++||.++ +|+|+
T Consensus 177 ~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 255 (389)
T 1o4s_A 177 AVLINSPNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRV 255 (389)
T ss_dssp EEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCC
T ss_pred EEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccce
Confidence 7777766666775 568899999999999999999999999988665532222222 33333558999998 68999
Q ss_pred ccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceecc-cceeEEEEe
Q 013008 324 GAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRG-LGLIIGIEF 392 (451)
Q Consensus 324 G~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g-~G~~~~~~~ 392 (451)
|++++++++++.+.......+++.++++++++.++|+.. .++..++ .++++. +..+.+ .|+++++.+
T Consensus 256 G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~ 333 (389)
T 1o4s_A 256 GYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKMG-VKFVEPEGAFYLFFKV 333 (389)
T ss_dssp EEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHTT-CCCCCCSBSSEEEEEC
T ss_pred EEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhcC-CeeecCCcceEEEEeC
Confidence 999999999888765444557888999999888887632 2222222 222222 222223 366677776
Q ss_pred cCChHHHHHHHH-HCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008 393 DVSATPVVDACR-DSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLP 444 (451)
Q Consensus 393 ~~~~~~~~~~l~-~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~ 444 (451)
..+..++.+.|+ ++||.+.++.. ++.+|++++ .+++++++++++|.++++
T Consensus 334 ~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 334 RGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp SSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 445778999998 88999988631 368999877 499999999999998874
No 77
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.97 E-value=1.4e-29 Score=253.82 Aligned_cols=328 Identities=16% Similarity=0.066 Sum_probs=226.5
Q ss_pred cCCCEEEeeccCcccc-cCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CCeEEecCCHHHH
Q 013008 95 AEGREYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADRVFFSNTGTEA 167 (451)
Q Consensus 95 ~~G~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA 167 (451)
.+|+++|||.++.+.. .++ .+|++.+++.+++++....+.. +..+.+.++++++.+..+ .+++++++||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 3688899999887643 455 5799999999988763211111 122335666666655433 5799999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC--CeeEeeCCCHHHHHHhcCCC
Q 013008 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--GVNFVEYGNIEATRKLIQPG 245 (451)
Q Consensus 168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l~~~ 245 (451)
+..+++++. .++++|++.+|+||++.......+ ..... .+..+ +.. -|+++|++++++
T Consensus 114 l~~~~~~l~-----------~~gd~Vl~~~~~~~~~~~~~~~~g-~~~~~---v~~~~~~~~~----~d~~~l~~~l~~- 173 (406)
T 1xi9_A 114 LQLIFGALL-----------DPGDEILVPGPSYPPYTGLVKFYG-GKPVE---YRTIEEEDWQ----PDIDDIRKKITD- 173 (406)
T ss_dssp HHHHHHHHC-----------CTTCEEEEEESCCHHHHHHHHHTT-CEEEE---EEEEGGGTSE----ECHHHHHHHCCT-
T ss_pred HHHHHHHhC-----------CCCCEEEEcCCCCccHHHHHHHcC-CEEEE---eecCCCcCCc----CCHHHHHHhhCc-
Confidence 999999763 158899999999998765443222 11100 01000 000 189999999975
Q ss_pred CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCc-cee--eeccccc-CCc
Q 013008 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFP-DIM--TLAKPLA-GGL 321 (451)
Q Consensus 246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~p-di~--t~sK~lg-~G~ 321 (451)
++++|+++++++++|. .++++++++|+++|++||++||+||+|+++.+.+.......++-.. +++ ++||.++ +|+
T Consensus 174 ~~~~v~i~~p~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 252 (406)
T 1xi9_A 174 RTKAIAVINPNNPTGA-LYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGW 252 (406)
T ss_dssp TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGG
T ss_pred CceEEEEECCCCCCCC-CcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCcc
Confidence 5777777777777775 5688999999999999999999999999886633333333333111 333 6899998 689
Q ss_pred cccccc--ccH----HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----------HHhCCCCcceecc
Q 013008 322 PIGAAL--VTE----KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PAFLAS----------KLARNPHVKDVRG 383 (451)
Q Consensus 322 ~iG~v~--~~~----~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~----------~~~~~~~~~~v~g 383 (451)
|+|+++ +++ ++++.+....... ++.|+++++++.++|+...+ ++..++ .++++|.+..+.+
T Consensus 253 r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 331 (406)
T 1xi9_A 253 RLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKP 331 (406)
T ss_dssp CCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCC
T ss_pred EEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecC
Confidence 999999 898 9988876432223 77889999999999963211 111111 2344554444444
Q ss_pred c-ceeEEEEec----CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 384 L-GLIIGIEFD----VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 384 ~-G~~~~~~~~----~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
. |+++++.+. .+..++.+.|+ ++||.+.++.. .+.+|++++ ++++++++++++|.++++++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 332 QGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMKERL 404 (406)
T ss_dssp CBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHHHC-
T ss_pred CeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHHh
Confidence 4 556666664 35678999998 88999987631 368999876 899999999999999997753
No 78
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.97 E-value=2e-29 Score=251.91 Aligned_cols=325 Identities=13% Similarity=0.112 Sum_probs=222.4
Q ss_pred CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc----ccc--CCCCCHHHHHHHHHHhhccC----CCeEEecCCHHH
Q 013008 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLT----HVS--NMYYSIPQIELAKRLVACSF----ADRVFFSNTGTE 166 (451)
Q Consensus 97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~e 166 (451)
|+++|||.++.. .+ ..+|++.+++.+++++.. +.+ .....+.+.++++++.+.++ .++|++++||++
T Consensus 34 ~~~~i~l~~~~~--~~-~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~ 110 (398)
T 3ele_A 34 KENVYDFSIGNP--SI-PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA 110 (398)
T ss_dssp GGGCEECCSCCC--CS-CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred CCCeEEeecCCC--CC-CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence 567899998844 23 378999999999987631 111 11123346667777665543 679999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCC-ceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC
Q 013008 167 ANEAAIKFARKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245 (451)
Q Consensus 167 A~~~al~~a~~~~~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 245 (451)
|+..+++++. .++ ++|++.+|+||++.......+.... . .+..++.. .-|+++|++++++
T Consensus 111 al~~~~~~l~-----------~~g~d~vl~~~p~~~~~~~~~~~~g~~~~-~---v~~~~~~~---~~d~~~l~~~l~~- 171 (398)
T 3ele_A 111 SLSICFRALT-----------SDAYDEFITIAPYFPEYKVFVNAAGARLV-E---VPADTEHF---QIDFDALEERINA- 171 (398)
T ss_dssp HHHHHHHHHC-----------CSTTCEEEEESSCCTHHHHHHHHTTCEEE-E---ECCCTTTS---SCCHHHHHHTCCT-
T ss_pred HHHHHHHHHc-----------CCCCCEEEEeCCCchhhHHHHHHcCCEEE-E---EecCCcCC---cCCHHHHHHHhCc-
Confidence 9999999764 157 8999999999987655433322111 1 11111000 0189999999975
Q ss_pred CeEEEEEccccCCCCccccCHHHHHHHHHHHHH------hCCEEEEeccccCCCccccc--ccccccCCCcceeeecccc
Q 013008 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD------AGALLVFDEVQCGLGRTGYL--WAHEHYGIFPDIMTLAKPL 317 (451)
Q Consensus 246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~------~g~llI~DEv~tg~gr~G~~--~~~~~~~~~pdi~t~sK~l 317 (451)
++++|+++.+++++|. .++.+.+++|+++|++ ||+++|+||+|++|.+.|.. .....++..+.+.++||.+
T Consensus 172 ~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 250 (398)
T 3ele_A 172 HTRGVIINSPNNPSGT-VYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSL 250 (398)
T ss_dssp TEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTS
T ss_pred CCCEEEEcCCCCCCCC-CCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcC
Confidence 5777777655666665 5688889999999999 99999999999998776642 2223344456667899999
Q ss_pred c-CCcccccccccHHHHh------hccCC-CccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------HHhCCCCcceec
Q 013008 318 A-GGLPIGAALVTEKVAS------AINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------KLARNPHVKDVR 382 (451)
Q Consensus 318 g-~G~~iG~v~~~~~i~~------~~~~~-~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------~~~~~~~~~~v~ 382 (451)
+ +|+|+||+++++++++ .+... ....+++.++++++++.++++.....+.+.+ .++++. +..+.
T Consensus 251 ~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~ 329 (398)
T 3ele_A 251 SLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATGDINAYKENRDLLYEGLTRIG-YHCFK 329 (398)
T ss_dssp SCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCCCHHHHHHHHHHHHHHHHHHT-CCEEC
T ss_pred CCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-CeecC
Confidence 8 7999999999887443 22211 1234667788888887766653222122111 222222 22233
Q ss_pred cc-ceeEEEEec-CChHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 383 GL-GLIIGIEFD-VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 383 g~-G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
+. |+++++.+. .+..++.+.|.++||++.|+.. ++.+|+++. +++|+|++++++|.+++++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 330 PDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp CSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred CCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHhh
Confidence 33 555888874 4677899999999999988642 378999764 799999999999999998765
No 79
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.97 E-value=1.1e-29 Score=252.44 Aligned_cols=317 Identities=15% Similarity=0.097 Sum_probs=221.8
Q ss_pred EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC-HHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHH
Q 013008 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS-IPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFAR 176 (451)
Q Consensus 100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~ 176 (451)
+|||.++.+ .++ .+|.+.+++.+++++ .. .+.. ....++++.++++++ .+++++++||++|++.+++++.
T Consensus 27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~-~~---~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~ 99 (381)
T 1v2d_A 27 AVNLGQGFP--SNP-PPPFLLEAVRRALGR-QD---QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV 99 (381)
T ss_dssp CEECCCCSC--SSC-CCHHHHHHHHHHTTT-SC---SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred eEEecCCCC--CCC-CCHHHHHHHHHHHHH-hc---CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC
Confidence 689988875 455 789999999998876 21 1222 235678888888887 4689999999999999999764
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC--CCeeEeeCCCHHHHHHhcCCCCeEEEEEcc
Q 013008 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (451)
Q Consensus 177 ~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~~~~~aavi~ep 254 (451)
.++++|++.+|+||++..... ..+..... .+.. +... ..|+++|++.+++ ++++|++++
T Consensus 100 -----------~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~---v~~~~~~~~~---~~d~~~l~~~l~~-~~~~v~~~~ 160 (381)
T 1v2d_A 100 -----------GPGDEVVVLEPFFDVYLPDAF-LAGAKARL---VRLDLTPEGF---RLDLSALEKALTP-RTRALLLNT 160 (381)
T ss_dssp -----------CTTCEEEEEESCCTTHHHHHH-HTTCEEEE---EECEEETTEE---ECCHHHHHTTCCT-TEEEEEEES
T ss_pred -----------CCCCEEEEcCCCchhHHHHHH-HcCCEEEE---EeCCCCCccC---CcCHHHHHHhcCc-CCEEEEECC
Confidence 158899999999999765432 22211110 1111 0000 1389999999964 578888877
Q ss_pred ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-ccccc--ccCCCcceeeeccccc-CCcccccccccH
Q 013008 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHE--HYGIFPDIMTLAKPLA-GGLPIGAALVTE 330 (451)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~--~~~~~pdi~t~sK~lg-~G~~iG~v~~~~ 330 (451)
+++++|. .++.+++++|+++|++||+++|+||+|+++.+ |. ..... ..+..+++.++||.++ +|+|+|++++++
T Consensus 161 ~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~ 238 (381)
T 1v2d_A 161 PMNPTGL-VFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPK 238 (381)
T ss_dssp SCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCT
T ss_pred CCCCCCC-ccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCH
Confidence 7777776 46789999999999999999999999998744 32 11111 3466777889999998 689999999999
Q ss_pred HHHhhccCCCccCCCCCcHHHHHHHHHHHHHh--cC--hHHHHH----------HHhCCCCcceeccc-ceeEEEEecCC
Q 013008 331 KVASAINYGDHGSTFAGSPLVCNAAIAVLDKI--SN--PAFLAS----------KLARNPHVKDVRGL-GLIIGIEFDVS 395 (451)
Q Consensus 331 ~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~--~~~~~~----------~~~~~~~~~~v~g~-G~~~~~~~~~~ 395 (451)
++++.+.......+++.++++++++.++|+.. .+ ++..++ .+++. .+..+.+. |+++++.+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 317 (381)
T 1v2d_A 239 EFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGW 317 (381)
T ss_dssp TTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTC
T ss_pred HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCcceEEEEecChH
Confidence 98888764444457788999999999999865 22 111111 12222 22223333 67788877432
Q ss_pred hHHHHHHHHHCCceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013008 396 ATPVVDACRDSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSN 449 (451)
Q Consensus 396 ~~~~~~~l~~~Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 449 (451)
. +.+.|.++||++.++. ..+.+|++++. +++++++++++|.+++++.+..
T Consensus 318 -~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~~ 374 (381)
T 1v2d_A 318 -D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEEELHLALERLGRVVNSPREA 374 (381)
T ss_dssp -C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHHHHHHHHHHHHHHC------
T ss_pred -h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhcccc
Confidence 2 6667778999998752 13689998775 9999999999999999877643
No 80
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.97 E-value=3.1e-29 Score=252.43 Aligned_cols=329 Identities=13% Similarity=0.063 Sum_probs=225.4
Q ss_pred CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc--cccC--CCCCHHHHHHHHHHhhccC----C-CeEEecCCHHHHH
Q 013008 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT--HVSN--MYYSIPQIELAKRLVACSF----A-DRVFFSNTGTEAN 168 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~--~~~~~~~~~l~~~l~~~~~----~-e~v~~~~sG~eA~ 168 (451)
..+|||..|.. .++ .+|.|.+++.+++++.. +.+. ....+.+.++++++.+.++ . ++|++++||++|+
T Consensus 28 ~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 28 HDVVNLGQGFP--DFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp SCCEECCCSSC--SSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CCceEeCCCCC--CCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 36789988875 343 78999999999987632 1111 1223446667777766554 2 6899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC--CCCeeE--ee-CCCHHHHHHhcC
Q 013008 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV--MPGVNF--VE-YGNIEATRKLIQ 243 (451)
Q Consensus 169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~-~~d~~~le~~l~ 243 (451)
..+++++. .++++|++.+|+||++.......+.... ..+..+. ..+... -. .-|+++|+++++
T Consensus 105 ~~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~-~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~ 172 (422)
T 3fvs_A 105 FTAFQALV-----------DEGDEVIIIEPFFDCYEPMTMMAGGRPV-FVSLKPGPIQNGELGSSSNWQLDPMELAGKFT 172 (422)
T ss_dssp HHHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEE-EEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC
T ss_pred HHHHHHHc-----------CCCCEEEEcCCCchhhHHHHHHcCCEEE-EEecccccccccccccccCCCCCHHHHHhhcC
Confidence 99999764 1688999999999997654443322111 1001000 000000 00 028999999997
Q ss_pred CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-cccccc----CCCcceeeeccccc
Q 013008 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEHY----GIFPDIMTLAKPLA 318 (451)
Q Consensus 244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~~----~~~pdi~t~sK~lg 318 (451)
+ ++++|+++++++++|. .++++++++|+++|++||+++|+||+|++|.+.|.. .....+ +..+++.++||.++
T Consensus 173 ~-~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g 250 (422)
T 3fvs_A 173 S-RTKALVLNTPNNPLGK-VFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFS 250 (422)
T ss_dssp T-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHT
T ss_pred C-CceEEEECCCCCCCCc-CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccC
Confidence 5 5777777777777776 458999999999999999999999999998777642 122222 23355668999998
Q ss_pred -CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH-----hcChHHHHH--------------HHhCCCCc
Q 013008 319 -GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----ISNPAFLAS--------------KLARNPHV 378 (451)
Q Consensus 319 -~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~--------------~~~~~~~~ 378 (451)
+|+|+|++++++++++.+.......+++.++++++++.++|+. ...++++++ .++++...
T Consensus 251 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 330 (422)
T 3fvs_A 251 ATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLK 330 (422)
T ss_dssp CGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred CccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 6899999999999998886555567888999999999999974 111222211 22333221
Q ss_pred ceecccceeEEEEecC-----C----------hHHHHHHHHH-CCceeeecCC----------CCEEEEeCCCCCCHHHH
Q 013008 379 KDVRGLGLIIGIEFDV-----S----------ATPVVDACRD-SGLLVLTAGK----------GNVVRLVPPLIISEQEL 432 (451)
Q Consensus 379 ~~v~g~G~~~~~~~~~-----~----------~~~~~~~l~~-~Gv~~~~~~~----------~~~iri~~~~~~t~e~i 432 (451)
...+..|+++++++.. . ..+++..|++ +||++.|+.. .+++|+++ ..++++|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~--~~~~e~i 408 (422)
T 3fvs_A 331 PIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCF--VKDEATL 408 (422)
T ss_dssp EEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEEC--CCCHHHH
T ss_pred ecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEe--cCCHHHH
Confidence 1234557788887631 1 4477887665 6999988531 36789864 4599999
Q ss_pred HHHHHHHHHHHHH
Q 013008 433 DQAVEILCKTLPV 445 (451)
Q Consensus 433 ~~~l~~l~~~l~~ 445 (451)
++++++|++++++
T Consensus 409 ~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 409 QAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998864
No 81
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.97 E-value=4.6e-30 Score=259.83 Aligned_cols=326 Identities=17% Similarity=0.099 Sum_probs=220.5
Q ss_pred EecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc----------cCCCCCHHHHHHHHHHhhccC--------
Q 013008 93 YDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV----------SNMYYSIPQIELAKRLVACSF-------- 154 (451)
Q Consensus 93 ~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~----------~~~~~~~~~~~l~~~l~~~~~-------- 154 (451)
||.+++.+.++..+...+.++ +|.+.+++.++.....+. ..+.......+|++.++++++
T Consensus 31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~ 108 (435)
T 3piu_A 31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT 108 (435)
T ss_dssp CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence 777887766666666655554 688888888765533211 011111112455555555443
Q ss_pred --CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC
Q 013008 155 --ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY 232 (451)
Q Consensus 155 --~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (451)
.+++++++||++|++.++++++ .+++.|++.+|+|++.........+.. +..+++
T Consensus 109 ~~~~~v~~~~gg~~a~~~~~~~l~-----------~~gd~vl~~~p~~~~~~~~~~~~~g~~------------~~~~~~ 165 (435)
T 3piu_A 109 FDPNHLVLTAGATSANETFIFCLA-----------DPGEAVLIPTPYYPGFDRDLKWRTGVE------------IVPIHC 165 (435)
T ss_dssp CCGGGEEEEEHHHHHHHHHHHHHC-----------CTTCEEEEEESCCTTHHHHTTTTTCCE------------EEEEEC
T ss_pred CCHHHEEEcCChHHHHHHHHHHhc-----------CCCCeEEECCCccccHHHHHHHhcCCE------------EEEeeC
Confidence 7899999999999999999765 258899999999988764432122221 222222
Q ss_pred C-------CHHHHHHhcCC-----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc
Q 013008 233 G-------NIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA 300 (451)
Q Consensus 233 ~-------d~~~le~~l~~-----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~ 300 (451)
+ |+++|++++++ .++++|+++++++++|. +++.+.+++|+++|++||++||+||+|+++++.|..+.
T Consensus 166 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~ 244 (435)
T 3piu_A 166 TSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFI 244 (435)
T ss_dssp CGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCC
T ss_pred CCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCc
Confidence 1 89999999863 36778777776677775 56888999999999999999999999998766665322
Q ss_pred -ccccC----CC-----cc----eeeeccccc-CCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC
Q 013008 301 -HEHYG----IF-----PD----IMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN 364 (451)
Q Consensus 301 -~~~~~----~~-----pd----i~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 364 (451)
..... +. +| +.++||++| +|+|+|++++ ++++.+.+.. ...++..++++++++.++++....
T Consensus 245 ~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~ 322 (435)
T 3piu_A 245 SVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK--MSSFGLVSSQTQHLLSAMLSDKKL 322 (435)
T ss_dssp CHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH--HGGGSCCCHHHHHHHHHHHHCHHH
T ss_pred CHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH--HhhcCCCCHHHHHHHHHHhcChHH
Confidence 11111 11 33 568999998 7899999998 5677776652 234456788888888887763210
Q ss_pred -hHHHH----H----------HHhCCCCcceecccc-eeEEEEecC--------ChHHHHHHHHHC-CceeeecC-----
Q 013008 365 -PAFLA----S----------KLARNPHVKDVRGLG-LIIGIEFDV--------SATPVVDACRDS-GLLVLTAG----- 414 (451)
Q Consensus 365 -~~~~~----~----------~~~~~~~~~~v~g~G-~~~~~~~~~--------~~~~~~~~l~~~-Gv~~~~~~----- 414 (451)
+++.+ + .+++. .+..+++.+ +++++.+.. ...++++.|+++ ||++.|+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~ 401 (435)
T 3piu_A 323 TKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCT 401 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCC
Confidence 11111 1 12233 233344554 888888842 345788889887 99998752
Q ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 415 KGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 415 ~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
..+++||+++.. +++++++++++|.++++++++
T Consensus 402 ~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~~ 434 (435)
T 3piu_A 402 EPGWFRVCFANL-PERTLDLAMQRLKAFVGEYYN 434 (435)
T ss_dssp STTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHhC
Confidence 137899988655 999999999999999987653
No 82
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.97 E-value=5.9e-29 Score=247.54 Aligned_cols=316 Identities=14% Similarity=0.094 Sum_probs=220.6
Q ss_pred EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHHHHH
Q 013008 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAA 171 (451)
Q Consensus 99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~~~a 171 (451)
.+|||.++.+ .+| .+|.+.+++.+++++....+.. ...+.+.++++++.+.++ .+ +|++++||++|+..+
T Consensus 31 ~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 107 (386)
T 1u08_A 31 QAINLSQGFP--DFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA 107 (386)
T ss_dssp TCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred CeEEecCCCC--CCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHH
Confidence 4789988865 466 6899999999998762221111 122335566666655444 56 899999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEE
Q 013008 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251 (451)
Q Consensus 172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi 251 (451)
++++. .++++|++.+|+||++....... +..... .+..+... ..|+++|++++.+ ++++|+
T Consensus 108 ~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~---v~~~~~~~---~~d~~~l~~~l~~-~~~~v~ 168 (386)
T 1u08_A 108 ITALV-----------RNGDEVICFDPSYDSYAPAIALS-GGIVKR---MALQPPHF---RVDWQEFAALLSE-RTRLVI 168 (386)
T ss_dssp HHHHC-----------CTTCEEEEEESCCTTHHHHHHHT-TCEEEE---EECCTTTC---CCCHHHHHHHCCT-TEEEEE
T ss_pred HHHhC-----------CCCCEEEEeCCCchhHHHHHHHc-CCEEEE---eecCcccC---cCCHHHHHHhhcc-cCEEEE
Confidence 99763 15889999999999876543222 211110 11111000 1389999999964 677887
Q ss_pred EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc----cccc-ccCCCcceeeeccccc-CCccccc
Q 013008 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL----WAHE-HYGIFPDIMTLAKPLA-GGLPIGA 325 (451)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~----~~~~-~~~~~pdi~t~sK~lg-~G~~iG~ 325 (451)
++.+++++|. .++.+++++|+++|++||+++|+||+|+++.+.|.. .... ..+..+.+.++||.++ +|+|+|+
T Consensus 169 l~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 247 (386)
T 1u08_A 169 LNTPHNPSAT-VWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGY 247 (386)
T ss_dssp EESSCTTTCC-CCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEE
T ss_pred EeCCCCCCCc-cCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEE
Confidence 7776677775 568899999999999999999999999988665531 1221 2455666779999998 6899999
Q ss_pred ccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH-----------HHhCCC--Ccceecc-cceeEEEE
Q 013008 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-----------KLARNP--HVKDVRG-LGLIIGIE 391 (451)
Q Consensus 326 v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-----------~~~~~~--~~~~v~g-~G~~~~~~ 391 (451)
+++++++++.+.......+++.++++++++.++|+.. +++.++ +.+.+. .+....+ .|+++++.
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~ 325 (386)
T 1u08_A 248 CVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVD 325 (386)
T ss_dssp EECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEEE
T ss_pred EEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCceEEEEEe
Confidence 9999999988765444457888999999999999854 222211 222221 2322333 36788888
Q ss_pred ec----CChHHHHHHHH-HCCceeeecC-------CCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008 392 FD----VSATPVVDACR-DSGLLVLTAG-------KGNVVRLVPPLIISEQELDQAVEILCK 441 (451)
Q Consensus 392 ~~----~~~~~~~~~l~-~~Gv~~~~~~-------~~~~iri~~~~~~t~e~i~~~l~~l~~ 441 (451)
+. .+..++++.|+ ++||++.|+. ..+.+|++++ .++++|++++++|++
T Consensus 326 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 326 YSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp CTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 84 25778888887 6899998752 2367999876 489999999999864
No 83
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=5.1e-29 Score=250.14 Aligned_cols=316 Identities=15% Similarity=0.135 Sum_probs=222.8
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----ADRVFFSNTGTEANE 169 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~ 169 (451)
+|+++|||.++.+ .++ .+|.+.+++ +++++....+.. ...+.+.++++++.+..+ .+++++++||++|++
T Consensus 41 ~g~~~i~l~~~~~--~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~ 116 (409)
T 2gb3_A 41 RGVRIHHLNIGQP--DLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL 116 (409)
T ss_dssp TTCEEEECSSCCC--CSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEeccCCCC--CCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHH
Confidence 5789999998876 456 578899999 888653221111 122335566666655433 478999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----C-HHHHHHhcC
Q 013008 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----N-IEATRKLIQ 243 (451)
Q Consensus 170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d-~~~le~~l~ 243 (451)
.+++++. .++++|++.+|+||++....... +.. +..++.+ + +++|+++++
T Consensus 117 ~~~~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~-g~~------------~~~v~~~~~~~~~~~~~l~~~l~ 172 (409)
T 2gb3_A 117 FSFAVIA-----------NPGDEILVLEPFYANYNAFAKIA-GVK------------LIPVTRRMEEGFAIPQNLESFIN 172 (409)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCTHHHHHHHHH-TCE------------EEEEECCGGGTSCCCTTGGGGCC
T ss_pred HHHHHhC-----------CCCCEEEEcCCCchhHHHHHHHc-CCE------------EEEeccCCCCCCccHHHHHHhhC
Confidence 9999764 15889999999999876543322 211 1222222 1 577888886
Q ss_pred CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC-Cccee--eeccccc-C
Q 013008 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIM--TLAKPLA-G 319 (451)
Q Consensus 244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~--t~sK~lg-~ 319 (451)
+ ++++|+++++++++|. .++.+++++|+++|++||++||+||+|+++.+.|..... ..++ ..|++ ++||.++ +
T Consensus 173 ~-~~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~ 249 (409)
T 2gb3_A 173 E-RTKGIVLSNPCNPTGV-VYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSAC 249 (409)
T ss_dssp T-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCG
T ss_pred c-CCeEEEECCCCCCCCC-CcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCc
Confidence 5 6777777777777776 468899999999999999999999999988666543222 1222 24554 7899998 6
Q ss_pred CcccccccccH-HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcce-e-c
Q 013008 320 GLPIGAALVTE-KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKD-V-R 382 (451)
Q Consensus 320 G~~iG~v~~~~-~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~-v-~ 382 (451)
|+|+|++++++ ++++.+.......+ +.++++++++.++|+.. ..++++ .++++. +.. + +
T Consensus 250 G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~ 325 (409)
T 2gb3_A 250 GARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLD--DSFFDFVRETYRERVETVLKKLEEHG-LKRFTKP 325 (409)
T ss_dssp GGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHHHHHHHHTT-CCCBCCC
T ss_pred cceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHHcC-ceeeeCC
Confidence 89999999998 89888765434444 78999999998888531 222211 222222 222 2 3
Q ss_pred ccceeEEEEec-CChHHHHHHHHHC------CceeeecC--------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 383 GLGLIIGIEFD-VSATPVVDACRDS------GLLVLTAG--------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 383 g~G~~~~~~~~-~~~~~~~~~l~~~------Gv~~~~~~--------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
..|+++++.+. .+..++.+.|+++ ||.+.++. ..+.+|++++ ++++++++++++|++++++++
T Consensus 326 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~~ 403 (409)
T 2gb3_A 326 SGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMFC 403 (409)
T ss_dssp SBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence 34677777773 4677899999987 99998752 1368999877 799999999999999998876
Q ss_pred h
Q 013008 448 S 448 (451)
Q Consensus 448 ~ 448 (451)
.
T Consensus 404 ~ 404 (409)
T 2gb3_A 404 S 404 (409)
T ss_dssp C
T ss_pred h
Confidence 4
No 84
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.97 E-value=4.6e-30 Score=257.44 Aligned_cols=321 Identities=16% Similarity=0.107 Sum_probs=223.0
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhc-ccccC--CCCCHHHHHHHHHHhhccCC-----CeEEecCCHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL-THVSN--MYYSIPQIELAKRLVACSFA-----DRVFFSNTGTEA 167 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~--~~~~~~~~~l~~~l~~~~~~-----e~v~~~~sG~eA 167 (451)
.|+++|||.+|.+ .+| .+|.+.+++.+++++. .+.+. ....+.+..+++++.+.++. ++|++++||++|
T Consensus 45 ~g~~~idl~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~a 121 (404)
T 2o1b_A 45 GPLPLINMAVGIP--DGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNG 121 (404)
T ss_dssp CSSCCEECCCCSC--SSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHH
T ss_pred CCCCEEecCCcCC--CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHH
Confidence 5788999999876 567 6899999999988542 11111 12223355555555444462 689999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCC
Q 013008 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGK 246 (451)
Q Consensus 168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~ 246 (451)
++.+++++. .++++|++.+|+||++.......+.. ... .+..+ +.. .|+++|++++. .+
T Consensus 122 l~~~~~~l~-----------~~gd~Vl~~~p~y~~~~~~~~~~g~~-~~~---v~~~~~~~~----~d~~~l~~~l~-~~ 181 (404)
T 2o1b_A 122 LVAVPTCVI-----------NPGDYVLLPDPGYTDYLAGVLLADGK-PVP---LNLEPPHYL----PDWSKVDSQII-DK 181 (404)
T ss_dssp HHHHHHHHC-----------CTTCEEEEEESCCSSHHHHHHHTTCE-EEE---EECCTTTCC----CCGGGSCHHHH-HH
T ss_pred HHHHHHHhc-----------CCCCEEEEcCCCchhHHHHHHHCCCE-EEE---eccCcccCc----CCHHHHHHhhc-cC
Confidence 999999764 15789999999999987654433221 111 11111 111 26778887775 35
Q ss_pred eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc-cc---cCCCcceeeeccccc-CCc
Q 013008 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EH---YGIFPDIMTLAKPLA-GGL 321 (451)
Q Consensus 247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~---~~~~pdi~t~sK~lg-~G~ 321 (451)
+++|+++..++++|. .++.+++++|+++|++||++||+||+|+++.+.|..... .. .+..+.+.++||.++ +|+
T Consensus 182 ~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 260 (404)
T 2o1b_A 182 TKLIYLTYPNNPTGS-TATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF 260 (404)
T ss_dssp EEEEEECSSCTTTCC-CCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGG
T ss_pred ceEEEEcCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchh
Confidence 677777655555665 568999999999999999999999999988665532111 11 133455668999998 689
Q ss_pred ccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceeccc-ce
Q 013008 322 PIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGL-GL 386 (451)
Q Consensus 322 ~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~-G~ 386 (451)
|+|++++++++++.+.......+++.|+++++++.++|+.. ++++++ .++++. +..+++. |+
T Consensus 261 r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~ 337 (404)
T 2o1b_A 261 RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHY--DDFLEEQSNVFKTRRDRFEAMLAKAD-LPFVHAKGGI 337 (404)
T ss_dssp CCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCCBSS
T ss_pred heEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhcC-CeecCCCcce
Confidence 99999999999988865444556788999999999998753 222222 222232 3333443 66
Q ss_pred eEEEEec--CChHHHHHHHH-HCCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 387 IIGIEFD--VSATPVVDACR-DSGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 387 ~~~~~~~--~~~~~~~~~l~-~~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
++++.+. .+..++.+.|+ ++||++.++.. .+.+|++++. +++++++++++|.+++++
T Consensus 338 ~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 338 YVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred EEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 7888874 24678889988 57999988631 3689998775 788999999999988764
No 85
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.97 E-value=3.6e-29 Score=247.75 Aligned_cols=312 Identities=15% Similarity=0.128 Sum_probs=216.6
Q ss_pred EeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhc------cC--CCeEEecCCHHHHHHHHH
Q 013008 101 LDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVAC------SF--ADRVFFSNTGTEANEAAI 172 (451)
Q Consensus 101 iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~--~e~v~~~~sG~eA~~~al 172 (451)
|||.+|.+ .+| .+|++.+++.+++++.......+......++++.++++ .+ .++|++++|+++|++.++
T Consensus 33 idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 33 IRLNTNEN--PYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL 109 (369)
T ss_dssp EECSSCCC--CSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred eeccCCCC--CCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence 89998876 566 78999999999987632111122222123555555555 33 578999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEE
Q 013008 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252 (451)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ 252 (451)
+++. .++++|++.+|+||++.......+.... . .+...+. ..|+++|++++++.++++|++
T Consensus 110 ~~l~-----------~~gd~Vl~~~~~y~~~~~~~~~~g~~~~-~---v~~~~~~----~~d~~~l~~~i~~~~~~~v~~ 170 (369)
T 3cq5_A 110 QAFG-----------GPGRTALGFQPSYSMHPILAKGTHTEFI-A---VSRGADF----RIDMDVALEEIRAKQPDIVFV 170 (369)
T ss_dssp HHHC-----------STTCEEEEEESSCTHHHHHHHHTTCEEE-E---EECCTTS----SCCHHHHHHHHHHHCCSEEEE
T ss_pred HHhc-----------CCCCEEEEcCCChHHHHHHHHHcCCEEE-E---ecCCcCC----CCCHHHHHHHhhccCCCEEEE
Confidence 8764 1578999999999988754433322111 0 0111110 127899999886425678888
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc-cccC-CCcceeeeccccc-CCccccccccc
Q 013008 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EHYG-IFPDIMTLAKPLA-GGLPIGAALVT 329 (451)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~~~-~~pdi~t~sK~lg-~G~~iG~v~~~ 329 (451)
+++++++|.+.+ ++++.++|+.+++++|+||+|+++++....... +.++ ..+++.++||+++ +|+|+|+++++
T Consensus 171 ~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 171 TTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred eCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 888888887665 566667777777999999999988643222221 2334 4566779999998 68999999999
Q ss_pred HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC-hHHHHH----------HHhCCCCcceecccceeEEEEecCChHH
Q 013008 330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN-PAFLAS----------KLARNPHVKDVRGLGLIIGIEFDVSATP 398 (451)
Q Consensus 330 ~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~----------~~~~~~~~~~v~g~G~~~~~~~~~~~~~ 398 (451)
+++++.+... ..+++.|+++++++.++|+..+. +...++ .+++. .+..+++.|.++++.+..+..+
T Consensus 247 ~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 323 (369)
T 3cq5_A 247 PAFIDAVMLV--RLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GYAVVPSESNFVFFGDFSDQHA 323 (369)
T ss_dssp THHHHHHHTT--SCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCEEECCSSSEEEEECCSSHHH
T ss_pred HHHHHHHHHc--CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCCCCeEEEEECCCCHHH
Confidence 9999888643 23567899999999999874210 011111 12222 2334566788888887556778
Q ss_pred HHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008 399 VVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 444 (451)
Q Consensus 399 ~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~ 444 (451)
+.+.|.++||.+.+++.++.+|++++ +++++++++++|+++++
T Consensus 324 l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 324 AWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp HHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 99999999999998743478999876 79999999999998764
No 86
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.97 E-value=5.5e-29 Score=246.71 Aligned_cols=277 Identities=17% Similarity=0.206 Sum_probs=210.4
Q ss_pred HHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCC
Q 013008 142 QIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS 218 (451)
Q Consensus 142 ~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 218 (451)
..+|++.+++++. .+++++++||++|+..+++++. .++|+|++.+|+|++........+..
T Consensus 65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~-----------~~gd~Vl~~~~~~~~~~~~~~~~g~~----- 128 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI-----------EPGDHVISLYPTYQQLYDIPKSLGAE----- 128 (375)
T ss_dssp CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC-----------CTTCEEEEEESSCTHHHHHHHHTTCE-----
T ss_pred hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc-----------CCCCEEEEeCCCchhHHHHHHHcCCE-----
Confidence 5688888888763 6899999999999999999764 26899999999999876543322211
Q ss_pred CCcCCCCCeeEeeCC-------CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008 219 PFEPVMPGVNFVEYG-------NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (451)
Q Consensus 219 ~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg 291 (451)
+..++.+ |+++|++++++ ++++|+++++++++|. +++.+++++|+++|++||++||+||+|++
T Consensus 129 --------~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~-~~~~~~l~~i~~la~~~~~~li~De~~~~ 198 (375)
T 3op7_A 129 --------VDLWQIEEENGWLPDLEKLRQLIRP-TTKMICINNANNPTGA-VMDRTYLEELVEIASEVGAYILSDEVYRS 198 (375)
T ss_dssp --------EEEEEEEGGGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECCSCC
T ss_pred --------EEEEeccccCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence 1222211 89999999975 6778888888777775 56899999999999999999999999998
Q ss_pred CCcccccccccccCCCcceeeeccccc-CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH
Q 013008 292 LGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS 370 (451)
Q Consensus 292 ~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 370 (451)
+++.+.....+.++..+++.+|||+++ +|+|+|++++++++++.+.......+++.+++.++++.++++..+ .+.++
T Consensus 199 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~ 276 (375)
T 3op7_A 199 FSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQ--EILER 276 (375)
T ss_dssp CSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHH--HHHHH
T ss_pred ccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccH--HHHHH
Confidence 876543334455667788889999998 689999999999999999877677788889999999998887432 22211
Q ss_pred --------------HHhCCCCcceeccc-ceeEEEEec--CChHHHHHHHH-HCCceeeecCC---CCEEEEeCCCCCCH
Q 013008 371 --------------KLARNPHVKDVRGL-GLIIGIEFD--VSATPVVDACR-DSGLLVLTAGK---GNVVRLVPPLIISE 429 (451)
Q Consensus 371 --------------~~~~~~~~~~v~g~-G~~~~~~~~--~~~~~~~~~l~-~~Gv~~~~~~~---~~~iri~~~~~~t~ 429 (451)
.+++++.+..+.+. |.+.++.+. .+..++++.|+ ++||.+.|+.. .+.+|++ +..++
T Consensus 277 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~--~~~~~ 354 (375)
T 3op7_A 277 NRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFERDGYVRLG--FACEQ 354 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEC--CCSCH
T ss_pred HHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCeEEEE--ecCCH
Confidence 23445555545444 455666663 45678888885 78999988642 3678885 55677
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 013008 430 QELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 430 e~i~~~l~~l~~~l~~~~~ 448 (451)
+++++++++|.+++++++.
T Consensus 355 ~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 355 ETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp HHHHHHHHHHHHHHGGGC-
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987653
No 87
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.97 E-value=2.5e-29 Score=248.01 Aligned_cols=310 Identities=15% Similarity=0.120 Sum_probs=218.9
Q ss_pred cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHH
Q 013008 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAI 172 (451)
Q Consensus 95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al 172 (451)
.+|+.+|||.++.+ .++ .+|+|.+++.+++++.......++.....+++++++++++ .++|++++||++|+..++
T Consensus 23 ~~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 23 PDIASWIKLNTNEN--PYP-PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp SCCTTSEECSSCCC--SSC-CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred ccccceeeccCCCC--CCC-CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 47789999999876 454 7899999999998774211122222234688888888887 689999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEE
Q 013008 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV 252 (451)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ 252 (451)
+++. .++|+|++.+|+|+++.......+.. +..++.++-..++++++..+.+++++
T Consensus 100 ~~l~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~l~~~~~~~~v~i 155 (360)
T 3hdo_A 100 RAFA-----------AEGEEIGYVHPSYSYYGTLAEVQGAR-------------VRTFGLTGDFRIAGFPERYEGKVFFL 155 (360)
T ss_dssp HHHC-----------CTTCEEEEESSSCTHHHHHHHHHTCE-------------EEEECBCTTSSBTTCCSSBCSSEEEE
T ss_pred HHHh-----------CCCCEEEEcCCChHHHHHHHHHCCCE-------------EEEeeCCCCCCHHHHHhhcCCCEEEE
Confidence 9664 15899999999999877554433221 12222211101122222112336666
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCcccccccccHH
Q 013008 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEK 331 (451)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~ 331 (451)
+.+++++|.+.+ +++|.++|+++|+++|+||+|++|...+.....+..+..+.+.++||.++ +|+|+|+++++++
T Consensus 156 ~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 231 (360)
T 3hdo_A 156 TTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPE 231 (360)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHH
T ss_pred eCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHH
Confidence 656677777776 78899999999999999999998743322222233444556678999998 6899999999999
Q ss_pred HHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEec-CCh
Q 013008 332 VASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEFD-VSA 396 (451)
Q Consensus 332 i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~~-~~~ 396 (451)
+++.+... ..+++.|+++++++.++|+. .+++++ .++++ .+...++.|.++++.+. .+.
T Consensus 232 ~~~~~~~~--~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~ 305 (360)
T 3hdo_A 232 VIAALDKI--RDHYNLDRLAQAACVAALRD---QAYLSECCRRIRETREWFTTELRSI-GYDVIPSQGNYLFATPPDRDG 305 (360)
T ss_dssp HHHHHHHH--SCSCCSCHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSSSEEEEECTTCCH
T ss_pred HHHHHHHh--CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEcCCCccEEEEECCCCCH
Confidence 99888643 24578899999999999873 222222 22233 34445677888888774 467
Q ss_pred HHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008 397 TPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLP 444 (451)
Q Consensus 397 ~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~ 444 (451)
.++.+.|.++||++.+++. .+.+|++++ +++++++++++|+++.+
T Consensus 306 ~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 306 KRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKEIGE 353 (360)
T ss_dssp HHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence 8899999999999988642 367999765 89999999999987654
No 88
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.97 E-value=4.4e-29 Score=250.68 Aligned_cols=321 Identities=17% Similarity=0.116 Sum_probs=220.4
Q ss_pred EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCC--CCCHHHHHHHHHHhhccC----CC-eEEecCCHHHHHHHHH
Q 013008 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNM--YYSIPQIELAKRLVACSF----AD-RVFFSNTGTEANEAAI 172 (451)
Q Consensus 100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~----~e-~v~~~~sG~eA~~~al 172 (451)
+|||.++.. .+| .+|.+.+++.+++++....+.. +..+.+.++++++.+.++ .+ +|++++||++|+..++
T Consensus 27 ~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~ 103 (411)
T 2o0r_A 27 AVNLGQGFP--DED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV 103 (411)
T ss_dssp CEESSCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred eeeccCcCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence 689988865 466 6899999999998763111111 122335566666655444 55 8999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-eeEeeCCCHHHHHHhcCCCCeEEEE
Q 013008 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAVF 251 (451)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~aavi 251 (451)
+++. .++++|++.+|+||++...... .+..... .+..++ ..+ ..|+++|++++++ ++++|+
T Consensus 104 ~~~~-----------~~gd~Vl~~~~~y~~~~~~~~~-~g~~~~~---v~~~~~~~~~--~~d~~~l~~~l~~-~~~~v~ 165 (411)
T 2o0r_A 104 LGLV-----------EPGSEVLLIEPFYDSYSPVVAM-AGAHRVT---VPLVPDGRGF--ALDADALRRAVTP-RTRALI 165 (411)
T ss_dssp HHHC-----------CTTCEEEEEESCCTTHHHHHHH-TTCEEEE---EECEEETTEE--ECCHHHHHHHCCT-TEEEEE
T ss_pred HHhc-----------CCCCEEEEeCCCcHhHHHHHHH-cCCEEEE---eeccccccCC--CCCHHHHHHhhcc-CceEEE
Confidence 9764 1588999999999997654322 2211110 111110 000 0389999999974 677888
Q ss_pred EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccc-ccccc----cCCCcceeeeccccc-CCccccc
Q 013008 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYL-WAHEH----YGIFPDIMTLAKPLA-GGLPIGA 325 (451)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~-~~~~~----~~~~pdi~t~sK~lg-~G~~iG~ 325 (451)
++++++++|. .++.+++++|+++|++||++||+||+|+++.+.|.. ..... .+..+.+.++||.++ +|+|+|+
T Consensus 166 l~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 244 (411)
T 2o0r_A 166 INSPHNPTGA-VLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGW 244 (411)
T ss_dssp EESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEE
T ss_pred EeCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEE
Confidence 7777777775 568899999999999999999999999988766642 12211 233445668999998 6899999
Q ss_pred ccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceec-ccceeEEE
Q 013008 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVR-GLGLIIGI 390 (451)
Q Consensus 326 v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~-g~G~~~~~ 390 (451)
+++++++++.+.......+++.++++++++.++|+.. +++.++ .+++.. +..+. ..|+++++
T Consensus 245 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~ 321 (411)
T 2o0r_A 245 ACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTE--DAWVAALRNSLRARRDRLAAGLTEIG-FAVHDSYGTYFLCA 321 (411)
T ss_dssp EECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHHT-CEECCCCBSSEEEE
T ss_pred EeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHcC-CEecCCCeeEEEEE
Confidence 9999999988765444456778888899998888753 222221 122222 22222 34668888
Q ss_pred Eec----CChHHHHHHHH-HCCceeeecC----------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 391 EFD----VSATPVVDACR-DSGLLVLTAG----------------KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 391 ~~~----~~~~~~~~~l~-~~Gv~~~~~~----------------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
.+. .+..++.+.|+ ++||++.++. ..+.+||++. .+++++++++++|.+++++.+
T Consensus 322 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~~ 397 (411)
T 2o0r_A 322 DPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERPA 397 (411)
T ss_dssp ECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC---
T ss_pred ecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhccC
Confidence 884 24678888887 5799998751 1256899865 489999999999998876554
No 89
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=4.6e-28 Score=242.33 Aligned_cols=318 Identities=16% Similarity=0.142 Sum_probs=222.7
Q ss_pred CCCEEEeeccCcccccCCC-CCHHHHHHHHHHHhhcccccC-----CCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHH
Q 013008 96 EGREYLDLSSGIAVNALGH-GDADWIKAVVDQANVLTHVSN-----MYYSIPQIELAKRLVACSFADRVFFSNTGTEANE 169 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~ 169 (451)
||++|+||.++.+ +|+ .+|++.+++.+++++...... ........+++++++++++.+..+++++|++++.
T Consensus 44 ~g~~~i~~~~~~~---~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~ 120 (401)
T 2bwn_A 44 GKQDITVWCGNDY---LGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNAND 120 (401)
T ss_dssp CEEEEEECSCSCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHH
T ss_pred CCCcEEEeeCCCc---ccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHH
Confidence 7899999998643 444 478999999999987432211 1234568899999999998555555577888999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--C-CC
Q 013008 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--P-GK 246 (451)
Q Consensus 170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~-~~ 246 (451)
.+++++.... +++.|++.++.|++.... .... ...+..++.+|+++|+++++ . ++
T Consensus 121 ~~~~~l~~~~---------~gd~Vl~~~~~~~~~~~~-~~~~------------g~~~~~v~~~d~~~le~~l~~~~~~~ 178 (401)
T 2bwn_A 121 ATLSTLRVLF---------PGLIIYSDSLNHASMIEG-IKRN------------AGPKRIFRHNDVAHLRELIAADDPAA 178 (401)
T ss_dssp HHHHHHHHHS---------TTCEEEEETTCCHHHHHH-HHHS------------CCCEEEECTTCHHHHHHHHHHSCTTS
T ss_pred HHHHHHhcCC---------CCCEEEECchhhHHHHHH-HHHc------------CCeEEEEcCCCHHHHHHHHHhhccCC
Confidence 9988653221 478888888877655432 2221 12355677779999999886 1 46
Q ss_pred eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-C-CCcccccccccccCC--Ccc--eeeecccccCC
Q 013008 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-G-LGRTGYLWAHEHYGI--FPD--IMTLAKPLAGG 320 (451)
Q Consensus 247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~~~~~~~~--~pd--i~t~sK~lg~G 320 (451)
+++|+++++++++|.+.+ +++|+++|++||+++|+||+|+ | +|..|.++. ..+++ .+| +.++||+++.
T Consensus 179 ~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~- 252 (401)
T 2bwn_A 179 PKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGV- 252 (401)
T ss_dssp CEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCS-
T ss_pred ceEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccC-
Confidence 889999999999998776 9999999999999999999998 3 565665443 34444 234 4489999983
Q ss_pred cccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCCcceecccc
Q 013008 321 LPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPHVKDVRGLG 385 (451)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~~~~v~g~G 385 (451)
+.|++++++++++.+.... ...+.+.++++++++.++++.++.. +..++ .++++ .+..+.+.|
T Consensus 253 -~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 330 (401)
T 2bwn_A 253 -FGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGS 330 (401)
T ss_dssp -CCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSS
T ss_pred -CCCEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccCCCC
Confidence 2288889998888765321 1223334678899999999987654 33322 11212 122233445
Q ss_pred eeEEEEecC--ChHHHHHHHH-HCCceeeecCC-----C-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 386 LIIGIEFDV--SATPVVDACR-DSGLLVLTAGK-----G-NVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 386 ~~~~~~~~~--~~~~~~~~l~-~~Gv~~~~~~~-----~-~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
.++++.+.. ...++.+.|+ ++||.+.|+.. + +.+|++++..++++++++++++|+++++++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~ 400 (401)
T 2bwn_A 331 HIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC 400 (401)
T ss_dssp SCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred CeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 678887742 4567888897 78999987531 1 489999998899999999999999987654
No 90
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.96 E-value=1.7e-28 Score=245.91 Aligned_cols=325 Identities=14% Similarity=0.083 Sum_probs=220.2
Q ss_pred CEEEeeccCcccccCCCCCHHHHHHHHHHHhhccc-ccC--CCCCHHHHHHHHHHhhccC----C-CeEEecCCHHHHHH
Q 013008 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-VSN--MYYSIPQIELAKRLVACSF----A-DRVFFSNTGTEANE 169 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~--~~~~~~~~~l~~~l~~~~~----~-e~v~~~~sG~eA~~ 169 (451)
..+|||..+.. .++ .+|+|.+++.+++.+... .+. .+..+.+.++++++.+.++ . ++|++++||++|+.
T Consensus 23 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 23 PSVVNLGQGFP--DIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TTSEECSSCCC--CSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCeEEecCCCC--CCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 45788888764 343 689999999999875311 111 1123345666666665443 4 79999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC-CCe--eEeeC-CCHHHHHHhcCCC
Q 013008 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM-PGV--NFVEY-GNIEATRKLIQPG 245 (451)
Q Consensus 170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~d~~~le~~l~~~ 245 (451)
.+++++. .++++|++.+|+|+++.......+.... ..++.+.. .+. ..-.+ -|+++|++++++
T Consensus 100 ~~~~~~~-----------~~gd~vl~~~p~~~~~~~~~~~~g~~~~-~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~- 166 (410)
T 3e2y_A 100 NSIQGLV-----------DPGDEVIIMVPFYDCYEPMVRMAGAVPV-FIPLRSKPTDGMKWTSSDWTFDPRELESKFSS- 166 (410)
T ss_dssp HHHHHHC-----------CTTCEEEEEESCCTTHHHHHHHTTCEEE-EEECEECCCCSSCCBGGGEECCHHHHHTTCCT-
T ss_pred HHHHHhc-----------CCCCEEEEeCCCchhhHHHHHHcCCEEE-EEeccccccccccccccCCcCCHHHHHhhcCC-
Confidence 9999764 1588999999999987654433322111 10000000 000 00000 289999999964
Q ss_pred CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-ccccc----CCCcceeeeccccc-C
Q 013008 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY----GIFPDIMTLAKPLA-G 319 (451)
Q Consensus 246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~----~~~pdi~t~sK~lg-~ 319 (451)
++++|+++++++++|. .++++.+++|+++|++||+++|+||+|++|.+.|... ....+ +..+++.++||.++ +
T Consensus 167 ~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~ 245 (410)
T 3e2y_A 167 KTKAIILNTPHNPLGK-VYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVT 245 (410)
T ss_dssp TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCG
T ss_pred CceEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCC
Confidence 6788888877777776 5688899999999999999999999999987776522 22222 22345568999998 6
Q ss_pred CcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH-----hcChHHHHH--------------HHhCCCCcce
Q 013008 320 GLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----ISNPAFLAS--------------KLARNPHVKD 380 (451)
Q Consensus 320 G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~--------------~~~~~~~~~~ 380 (451)
|+|+|++++++++++.+.......+++.++++++++.++|+. ...+++.++ .++++.....
T Consensus 246 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 325 (410)
T 3e2y_A 246 GWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPI 325 (410)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred CceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeec
Confidence 899999999999998886555667888999999999999873 111222211 2333432222
Q ss_pred ecccceeEEEEecC-----C--------hHHHHHHHH-HCCceeeecCC----------CCEEEEeCCCCCCHHHHHHHH
Q 013008 381 VRGLGLIIGIEFDV-----S--------ATPVVDACR-DSGLLVLTAGK----------GNVVRLVPPLIISEQELDQAV 436 (451)
Q Consensus 381 v~g~G~~~~~~~~~-----~--------~~~~~~~l~-~~Gv~~~~~~~----------~~~iri~~~~~~t~e~i~~~l 436 (451)
.+..|+++++++.. . ..+++..++ ++||++.|+.. .+++||+ +.+++|+|++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis--~~~~~e~l~~~l 403 (410)
T 3e2y_A 326 VPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFC--FIKKDSTLDAAE 403 (410)
T ss_dssp BCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEE--CCCCHHHHHHHH
T ss_pred CCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEE--EcCCHHHHHHHH
Confidence 34567788887731 1 136777665 67999987531 2678886 556999999999
Q ss_pred HHHHH
Q 013008 437 EILCK 441 (451)
Q Consensus 437 ~~l~~ 441 (451)
++|++
T Consensus 404 ~~l~~ 408 (410)
T 3e2y_A 404 EIFRA 408 (410)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99875
No 91
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.96 E-value=1.8e-28 Score=240.81 Aligned_cols=316 Identities=14% Similarity=0.107 Sum_probs=213.4
Q ss_pred EeecccEEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecC
Q 013008 85 ASGKGCKLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSN 162 (451)
Q Consensus 85 ~~~~G~~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~ 162 (451)
.+++|.++++.+|+++|||.++.. .++ .+|++.+++.+++..... ++.....+++++++++++ .+++++++
T Consensus 2 ~~~~g~~~~~~~g~~~id~~~~~~--~~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~lr~~la~~~~~~~~~i~~t~ 74 (350)
T 3fkd_A 2 IFGHGDEGITPLSSEIVNFSTTVW--TDG-DKDHLEKHLVENLNCIRH----YPEPDAGTLRQMLAKRNSVDNNAILVTN 74 (350)
T ss_dssp --------------CCEECSCCSC--CCS-CCHHHHHHHHHTGGGGGS----CCCTTCHHHHHHHHHHTTCCGGGEEEES
T ss_pred cccccchHhhhccccEEEccCCCC--CCC-CCHHHHHHHHHhHhHHhc----CCCCcHHHHHHHHHHHhCcCHHHEEEcC
Confidence 468899999999999999999865 455 789999999988744322 222223578888998887 57999999
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-CCHHHHHHh
Q 013008 163 TGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKL 241 (451)
Q Consensus 163 sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~ 241 (451)
||++|+..+++++. +++|++.+|+|+++.......+ ..+..++. ++.+.
T Consensus 75 g~~~al~~~~~~l~-------------gd~Vi~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~---- 124 (350)
T 3fkd_A 75 GPTAAFYQIAQAFR-------------GSRSLIAIPSFAEYEDACRMYE-------------HEVCFYPSNEDIGE---- 124 (350)
T ss_dssp HHHHHHHHHHHHTT-------------TCEEEEEESCCHHHHHHHHHTT-------------CEEEEEETTSCGGG----
T ss_pred CHHHHHHHHHHHHC-------------CCEEEEeCCCcHHHHHHHHHcC-------------CeEEEEecCCcccc----
Confidence 99999999999655 5789999999998764433322 12333443 22111
Q ss_pred cCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc--cccccCCCcceeeeccccc-
Q 013008 242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW--AHEHYGIFPDIMTLAKPLA- 318 (451)
Q Consensus 242 l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~--~~~~~~~~pdi~t~sK~lg- 318 (451)
+...++++|+++..++++|.+ .+.+.+++|+++|+++ +||+||+|.++++.+... ..+..+....+.++||.++
T Consensus 125 ~~~~~~~~v~i~~p~nptG~~-~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~ 201 (350)
T 3fkd_A 125 ADFSNMDFCWLCNPNNPDGRL-LQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGI 201 (350)
T ss_dssp SCCTTCSEEEEESSCTTTCCC-CCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSC
T ss_pred CccCCCCEEEEeCCCCCcCCC-CCHHHHHHHHHhCCCC--EEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccC
Confidence 221355666666666666654 5666677777777655 999999999887666432 2222233345568999998
Q ss_pred CCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc--Ch---HHHHH------HHhCCCCcceeccccee
Q 013008 319 GGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--NP---AFLAS------KLARNPHVKDVRGLGLI 387 (451)
Q Consensus 319 ~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~~---~~~~~------~~~~~~~~~~v~g~G~~ 387 (451)
+|+++|++++++++++.+.... .+++.++++++++.++|+... .+ ...++ .++++|.+...++.|.+
T Consensus 202 ~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 279 (350)
T 3fkd_A 202 PGLRIGYIVANKDFMKRVAAFS--TPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHPSGTTF 279 (350)
T ss_dssp GGGCCEEEECCHHHHHHHHTTC--CTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEECCCSSSE
T ss_pred cchheEeEEeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEECCCCCcE
Confidence 7899999999999999887543 457789999999999998533 11 11111 33445666666777888
Q ss_pred EEEEecC-ChHHHHHHHHH-CCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 388 IGIEFDV-SATPVVDACRD-SGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 388 ~~~~~~~-~~~~~~~~l~~-~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
+++.++. +..++.+.|.+ +||.+.++.. .+.+|++++ +++++++++++|++++++
T Consensus 280 ~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 280 FLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp EEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 8888853 67889999999 9999998642 468999755 788899999988877653
No 92
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.96 E-value=7.4e-29 Score=251.96 Aligned_cols=328 Identities=14% Similarity=0.067 Sum_probs=218.5
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccc--ccCCC-CCHHHHHHHHHHhhcc----C--CCeEEecCCHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--VSNMY-YSIPQIELAKRLVACS----F--ADRVFFSNTGTE 166 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~-~~~~~~~l~~~l~~~~----~--~e~v~~~~sG~e 166 (451)
+|+++|||.+|.. .++ .+|.|++++.+++++... ....+ ......+|++.+++++ + .++|++++|+++
T Consensus 67 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~ 143 (449)
T 3qgu_A 67 PDAKIISLGIGDT--TEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKC 143 (449)
T ss_dssp TTCCCEECSSCCC--CCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHH
T ss_pred CCCCEEEeeCCCC--CCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHH
Confidence 6889999999854 343 689999999999986431 11122 2222567777777775 3 679999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC-CC
Q 013008 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-PG 245 (451)
Q Consensus 167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~ 245 (451)
|+..+ ..+. .++|.|++.+|+||++.......+....+.. ....++..++.++.+.+...+. ..
T Consensus 144 al~~~-~~l~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (449)
T 3qgu_A 144 DIARI-QMMF-----------GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG---TGFDGIEYMVCNPDNHFFPDLSKAK 208 (449)
T ss_dssp HHHHH-HHHH-----------CSSSCEEEEESCCTHHHHHHHHHTCSCCBCS---SSBTTEEEEECCGGGTTCCCGGGCC
T ss_pred HHHHH-HHHh-----------CCCCEEEEcCCCChhHHHHHHHcCCcccccc---cccceeEEEecccccCCcCChhHcC
Confidence 99988 4333 1689999999999998765544433211110 0012244455443222211111 13
Q ss_pred CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-ccccccc----CCCcceeeeccccc-C
Q 013008 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHY----GIFPDIMTLAKPLA-G 319 (451)
Q Consensus 246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~----~~~pdi~t~sK~lg-~ 319 (451)
++++|+++..++++|. +++.+++++|+++|++||++||+||+|++|++.|. ......+ +..+++.+|||++| +
T Consensus 209 ~~~~v~l~~p~NPtG~-~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 287 (449)
T 3qgu_A 209 RTDIIFFCSPNNPTGA-AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFT 287 (449)
T ss_dssp CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCT
T ss_pred CCCEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCc
Confidence 5666666665666665 57899999999999999999999999999877653 1122222 33455779999998 7
Q ss_pred CcccccccccHHHHhh--------ccCCCccCCCCCcHHHHHHHHHHHHHhcC---hHHHHH----------HHhCCCCc
Q 013008 320 GLPIGAALVTEKVASA--------INYGDHGSTFAGSPLVCNAAIAVLDKISN---PAFLAS----------KLARNPHV 378 (451)
Q Consensus 320 G~~iG~v~~~~~i~~~--------~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~----------~~~~~~~~ 378 (451)
|+|+||+++++++++. +.......+++.++++++++.++|+.... ++..++ .++++. +
T Consensus 288 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~ 366 (449)
T 3qgu_A 288 GVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMG-F 366 (449)
T ss_dssp TCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred cceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-C
Confidence 9999999999887762 22222334557899999999888764111 111111 222232 3
Q ss_pred ceecc-cceeEEEEec-CChHHHHHHHHHC-CceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 379 KDVRG-LGLIIGIEFD-VSATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 379 ~~v~g-~G~~~~~~~~-~~~~~~~~~l~~~-Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
....+ .|.++++.+. .+..++++.|+++ ||++.|+.. .+++||+ +..++|+|++++++|++++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 367 SVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENILEAVRRFKEAYGK 439 (449)
T ss_dssp CEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHC-
T ss_pred eeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHHh
Confidence 23333 4788888874 4577899899876 999987631 3688987 556999999999999998864
No 93
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.96 E-value=2.5e-28 Score=241.08 Aligned_cols=307 Identities=17% Similarity=0.162 Sum_probs=221.3
Q ss_pred CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHH
Q 013008 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a 175 (451)
+++|||.++.. +++ .+|++++++.++++.... ++.....+++++++++++ .++|++++||++|+..+++++
T Consensus 30 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~----y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l 102 (365)
T 3get_A 30 KEVIKLASNEN--PFG-TPPKAIECLRQNANKAHL----YPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK 102 (365)
T ss_dssp SCCEECSSCCC--TTC-SCHHHHHHHHHHGGGTTS----CCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred CceEEecCCCC--CCC-CCHHHHHHHHHHHHhhcc----CCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH
Confidence 67899998865 465 789999999998875322 222223578888888887 679999999999999999976
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC-CCCeeEeeCCCHHHHHHhcCCCCeEEEEEcc
Q 013008 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (451)
Q Consensus 176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~aavi~ep 254 (451)
. .++++|++.+|+|+++.......+..... .+. ..+. .|+++|++++++ ++++|+++.
T Consensus 103 ~-----------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~----v~~~~~~~-----~d~~~l~~~l~~-~~~~v~~~~ 161 (365)
T 3get_A 103 L-----------NSKNAFLQAGVTFAMYEIYAKQCGAKCYK----TQSITHNL-----DEFKKLYETHKD-EIKLIFLCL 161 (365)
T ss_dssp C-----------CTTCEEEECSSCCTHHHHHHHHHTCEEEE----CSSSSCCH-----HHHHHHHHHTTT-TEEEEEEES
T ss_pred h-----------CCCCEEEEeCCChHHHHHHHHHcCCEEEE----EecCCCCC-----CCHHHHHHHhCC-CCCEEEEcC
Confidence 4 16899999999999876544333222111 111 1111 278999999974 677777765
Q ss_pred ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc--cc-ccc-cc---cccCCCcceeeeccccc-CCcccccc
Q 013008 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR--TG-YLW-AH---EHYGIFPDIMTLAKPLA-GGLPIGAA 326 (451)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr--~G-~~~-~~---~~~~~~pdi~t~sK~lg-~G~~iG~v 326 (451)
+++++|. +.+.+.+++|+++| ++|+++|+||+|+++.+ .+ ... .. +..+....+.++||.++ +|+++|++
T Consensus 162 p~nptG~-~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 239 (365)
T 3get_A 162 PNNPLGE-CLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYG 239 (365)
T ss_dssp SCTTTCC-CCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEE
T ss_pred CCCCCCC-CcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEE
Confidence 5666665 45777888888888 57999999999987652 22 111 11 22343445568999998 68999999
Q ss_pred cccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCcceecccceeEEEEe
Q 013008 327 LVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHVKDVRGLGLIIGIEF 392 (451)
Q Consensus 327 ~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~~~v~g~G~~~~~~~ 392 (451)
++++++++.+... ..+++.|+++++++.++|+. .+++++ .++++ .+...++.|.++++.+
T Consensus 240 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~ 313 (365)
T 3get_A 240 IANANIISAFYKL--RAPFNVSNLALKAAVAAMDD---DEFTEKTLENNFSQMELYKEFAKKH-NIKIIDSYTNFITYFF 313 (365)
T ss_dssp EECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSSSEEEEEC
T ss_pred EcCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCCCCeEEEEEC
Confidence 9999999888643 23467899999999988873 222222 22333 3444667788888888
Q ss_pred cC-ChHHHHHHHHHCCceeeecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 393 DV-SATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 393 ~~-~~~~~~~~l~~~Gv~~~~~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
.. +..++.+.|.++||.+.++.. .+.+|++++ +++++++++++|++++
T Consensus 314 ~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 314 DEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp SSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 54 678899999999999988752 378999865 8999999999999876
No 94
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.96 E-value=5.2e-28 Score=243.13 Aligned_cols=327 Identities=13% Similarity=0.064 Sum_probs=217.0
Q ss_pred CEEEeeccCcccc-cCCCCCHHHHHHHHHHHhhcc-cccCC--CCCHHHHHHHHHHhhc----------cCCCeEEecCC
Q 013008 98 REYLDLSSGIAVN-ALGHGDADWIKAVVDQANVLT-HVSNM--YYSIPQIELAKRLVAC----------SFADRVFFSNT 163 (451)
Q Consensus 98 ~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~-~~~~~--~~~~~~~~l~~~l~~~----------~~~e~v~~~~s 163 (451)
+++|||.++.+.. .-...+|.+.+++.+++++.. +.+.. ...+.+..+++++.+. ...++|++++|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g 112 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG 112 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence 5689999887642 112478999999999987632 11111 1223355566655521 12679999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-CCHHHHHHhc
Q 013008 164 GTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-GNIEATRKLI 242 (451)
Q Consensus 164 G~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l 242 (451)
|++|+..+++++. .++++|++.+|+||++....... +..... .+..++. .+ .|+++|++++
T Consensus 113 ~~~al~~~~~~l~-----------~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~---v~~~~~~---~~~~d~~~l~~~l 174 (416)
T 1bw0_A 113 GSHGILMAITAIC-----------DAGDYALVPQPGFPHYETVCKAY-GIGMHF---YNCRPEN---DWEADLDEIRRLK 174 (416)
T ss_dssp HHHHHHHHHHHHC-----------CTTCEEEEEESCCTHHHHHHHHT-TCEEEE---EEEEGGG---TTEECHHHHHHHC
T ss_pred hHHHHHHHHHHhC-----------CCCCEEEEcCCCcHhHHHHHHHc-CcEEEE---eecCccc---CCCCCHHHHHHHh
Confidence 9999999999764 15789999999999976543322 211100 0100000 01 2899999999
Q ss_pred CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc----cc-cccccCCC---cceeeec
Q 013008 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY----LW-AHEHYGIF---PDIMTLA 314 (451)
Q Consensus 243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~----~~-~~~~~~~~---pdi~t~s 314 (451)
+++..++++++| ++++|. .++++++++|+++|++||++||+||+|+++.+.|. .+ ....++.. ..+.++|
T Consensus 175 ~~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~s 252 (416)
T 1bw0_A 175 DDKTKLLIVTNP-SNPCGS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTA 252 (416)
T ss_dssp CTTEEEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEEST
T ss_pred ccCCeEEEEeCC-CCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecch
Confidence 754444555666 455565 57899999999999999999999999998866554 21 22222222 2234789
Q ss_pred cccc-CCcccccccccHH--HHhhccCC---CccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhC
Q 013008 315 KPLA-GGLPIGAALVTEK--VASAINYG---DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLAR 374 (451)
Q Consensus 315 K~lg-~G~~iG~v~~~~~--i~~~~~~~---~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~ 374 (451)
|.++ +|+|+||++++++ +++.+... ....+++.|+++++++.++|+.+. ++++++ .+++
T Consensus 253 K~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 331 (416)
T 1bw0_A 253 KNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP-QEHLDQIVAKIEESAMYLYNHIGE 331 (416)
T ss_dssp TTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9986 5899999998653 44433211 112467789999999999988432 222211 2344
Q ss_pred CCCcceecc-cceeEEEEec-------CChHHHHHHHH-HCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008 375 NPHVKDVRG-LGLIIGIEFD-------VSATPVVDACR-DSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKT 442 (451)
Q Consensus 375 ~~~~~~v~g-~G~~~~~~~~-------~~~~~~~~~l~-~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~ 442 (451)
+|.+..+.+ .|+++++.++ .+..++++.|+ ++||.+.|+. ..+.+|+++ .++++++++++++|.++
T Consensus 332 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~--~~~~e~l~~~l~~l~~~ 409 (416)
T 1bw0_A 332 CIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTT--TRPVEVYREAVERIKAF 409 (416)
T ss_dssp STTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEe--cCCHHHHHHHHHHHHHH
Confidence 555544434 4777887774 34677888886 7899998864 236899987 47899999999999999
Q ss_pred HHHHh
Q 013008 443 LPVLD 447 (451)
Q Consensus 443 l~~~~ 447 (451)
+++.+
T Consensus 410 l~~~~ 414 (416)
T 1bw0_A 410 CQRHA 414 (416)
T ss_dssp HHHHB
T ss_pred HHHhh
Confidence 98764
No 95
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.96 E-value=5.3e-27 Score=234.32 Aligned_cols=322 Identities=16% Similarity=0.056 Sum_probs=220.6
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCC-------CCHHHHHHHHHHhhccCC---CeEEecCCHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY-------YSIPQIELAKRLVACSFA---DRVFFSNTGT 165 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~~---e~v~~~~sG~ 165 (451)
+|+.++.|..+.. |+.+|++.+++.+++++.......+ ......+++++++++++. +.+++++||+
T Consensus 20 ~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 95 (406)
T 1kmj_A 20 NGLPLAYLDSAAS----AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTT 95 (406)
T ss_dssp TTEECEECCTTTC----CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCcc----CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChh
Confidence 4555555444332 4688999999999998742111111 233477899999999875 7899999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhh---hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhc
Q 013008 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL---ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242 (451)
Q Consensus 166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 242 (451)
+|++.++++++.+.. .++++|++.+++||+...... ...+..... .+...+. ..|+++|++++
T Consensus 96 ~a~~~~~~~~~~~~~-------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~----~~d~~~l~~~l 161 (406)
T 1kmj_A 96 EGINLVANSWGNSNV-------RAGDNIIISQMEHHANIVPWQMLCARVGAELRV---IPLNPDG----TLQLETLPTLF 161 (406)
T ss_dssp HHHHHHHHHTHHHHC-------CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEE---ECBCTTS----CBCGGGHHHHC
T ss_pred HHHHHHHHHhhhhcC-------CCCCEEEEecccchHHHHHHHHHHHhCCCEEEE---EecCCCC----CcCHHHHHHHh
Confidence 999999998753210 158899999999998753321 111211111 1111111 02789999999
Q ss_pred CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCC
Q 013008 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGG 320 (451)
Q Consensus 243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G 320 (451)
.+ ++++|+++++++++|.+.+ +++|+++|++||+++|+||+|+. |... +..... .+|++ +++|.+|+
T Consensus 162 ~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~-g~~~--~~~~~~--~~d~~~~s~~K~~g~- 230 (406)
T 1kmj_A 162 DE-KTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAV-MHHP--VDVQAL--DCDFYVFSGHKLYGP- 230 (406)
T ss_dssp CT-TEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTT-TTSC--CCHHHH--TCSEEEEEGGGTTSC-
T ss_pred cc-CCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhc-CCCC--Cccccc--CCCEEEEEchhccCC-
Confidence 75 6889999999888888776 99999999999999999999963 3321 122222 46765 68999853
Q ss_pred cccccccccHHHHhhccCCCcc---------------------CCCCCcHHHHHHHH-HHHHHhcCh---HHHHH-----
Q 013008 321 LPIGAALVTEKVASAINYGDHG---------------------STFAGSPLVCNAAI-AVLDKISNP---AFLAS----- 370 (451)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~---------------------~t~~~~~~~~aaa~-aal~~~~~~---~~~~~----- 370 (451)
..+|++++++++++.+.+...+ .+.+.+++.+++++ ++++.+.+. .+.++
T Consensus 231 ~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 310 (406)
T 1kmj_A 231 TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLM 310 (406)
T ss_dssp TTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 2279999999999887654321 12334556666555 677765421 22222
Q ss_pred -----HHhCCCCcceecc--cceeEEEEec-CChHHHHHHHHHCCceeeecC-----------CCCEEEEeCCCCCCHHH
Q 013008 371 -----KLARNPHVKDVRG--LGLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------KGNVVRLVPPLIISEQE 431 (451)
Q Consensus 371 -----~~~~~~~~~~v~g--~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~-----------~~~~iri~~~~~~t~e~ 431 (451)
.++++|.+..+.+ .|.++.+.+. .+..++.+.|.++||.+.++. ..+.+|++++..+|++|
T Consensus 311 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~ 390 (406)
T 1kmj_A 311 HYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEE 390 (406)
T ss_dssp HHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHH
T ss_pred HHHHHHHhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHH
Confidence 3344554444444 6778888774 356788999999999998753 13789999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013008 432 LDQAVEILCKTLPVL 446 (451)
Q Consensus 432 i~~~l~~l~~~l~~~ 446 (451)
+++++++|+++++.+
T Consensus 391 i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 391 VDRLVTGLQRIHRLL 405 (406)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998765
No 96
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.96 E-value=3.1e-28 Score=242.93 Aligned_cols=319 Identities=14% Similarity=0.081 Sum_probs=203.6
Q ss_pred EEecCCCEEEeeccCcccccCC--CCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc--------CCCeEEe-
Q 013008 92 LYDAEGREYLDLSSGIAVNALG--HGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS--------FADRVFF- 160 (451)
Q Consensus 92 l~d~~G~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------~~e~v~~- 160 (451)
+.+..|+++|||.+|.+..+.| +.+|++.+++.+++++... ..+.......+|.+.+++++ ..++|++
T Consensus 20 ~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~ 98 (396)
T 2q7w_A 20 FRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETT-KNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTA 98 (396)
T ss_dssp --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC-CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred HhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccc-cCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEE
Confidence 3333567899999998765566 4679999999998765311 11112222345555555543 1678998
Q ss_pred -cCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC---C---
Q 013008 161 -SNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY---G--- 233 (451)
Q Consensus 161 -~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--- 233 (451)
++||++|++.+++++..+. ++++|++.+|+||++.......+.. +..++. +
T Consensus 99 ~~~g~~~a~~~~~~~~~~~~---------~gd~Vl~~~p~y~~~~~~~~~~g~~-------------~~~~~~~~~~~~~ 156 (396)
T 2q7w_A 99 QTPGGTGALRVAADFLAKNT---------SVKRVWVSNPSWPNHKSVFNSAGLE-------------VREYAYYDAENHT 156 (396)
T ss_dssp EESHHHHHHHHHHHHHHHHS---------CCCEEEEEESCCTHHHHHHHHTTCE-------------EEEEECEETTTTE
T ss_pred ecccchhhHHHHHHHHHHhC---------CCCEEEEcCCCchhHHHHHHHcCCc-------------eEEEecccCCCCC
Confidence 9999999999999776442 5889999999999987554433221 122222 1
Q ss_pred -CHHHHHHhcCCC--CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc--ccccccccCCCc
Q 013008 234 -NIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG--YLWAHEHYGIFP 308 (451)
Q Consensus 234 -d~~~le~~l~~~--~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~~~~~~~~~~p 308 (451)
|+++|++.+++. +.+++++...++++|. +++.+++++|+++|++||+++|+||+|++|++.| .......+...+
T Consensus 157 ~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 235 (396)
T 2q7w_A 157 LDFDALINSLNEAQAGDVVLFHGCCHNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMH 235 (396)
T ss_dssp ECHHHHHHHHTTCCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHC
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcC
Confidence 799999999742 3555555545555554 6789999999999999999999999999987654 222232222112
Q ss_pred c----eeeeccccc-CCcccccccc---cH----HHHhhccCCCccCCCC-CcHHHHHHHHHHHHHhc-C---hHHHHH-
Q 013008 309 D----IMTLAKPLA-GGLPIGAALV---TE----KVASAINYGDHGSTFA-GSPLVCNAAIAVLDKIS-N---PAFLAS- 370 (451)
Q Consensus 309 d----i~t~sK~lg-~G~~iG~v~~---~~----~i~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~-~---~~~~~~- 370 (451)
| +.++||.++ +|+|+||+++ ++ ++++.+... +..+++ .|+++++++.++|+... . +++.++
T Consensus 236 ~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~ 314 (396)
T 2q7w_A 236 KELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAA-IRANYSNPPAHGASVVATILSNDALRAIWEQELTDM 314 (396)
T ss_dssp SCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC
T ss_pred CcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHH-HhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 2 458899999 6999999986 55 455544321 123443 48999998888875320 0 111111
Q ss_pred -------------HHhCCC---Ccceec-ccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHH
Q 013008 371 -------------KLARNP---HVKDVR-GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELD 433 (451)
Q Consensus 371 -------------~~~~~~---~~~~v~-g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~ 433 (451)
.++.++ .+.... ..|+++++.+ ....+.+.|.++||++.++ +|++++. .++++++
T Consensus 315 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gv~v~~~-----~Ris~~~-~~~e~i~ 386 (396)
T 2q7w_A 315 RQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL--TKEQVLRLREEFGVYAVAS-----GRVNVAG-MTPDNMA 386 (396)
T ss_dssp -CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCC--CHHHHHHHHHHHCEECCTT-----CEEEGGG-CCTTTHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecC--CHHHHHHHHHhcCeeecCC-----ceEEEee-cCHHHHH
Confidence 222222 132223 3366656544 3445556666889999863 5998875 3999999
Q ss_pred HHHHHHHHHH
Q 013008 434 QAVEILCKTL 443 (451)
Q Consensus 434 ~~l~~l~~~l 443 (451)
+++++|++++
T Consensus 387 ~~~~~l~~~l 396 (396)
T 2q7w_A 387 PLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999998763
No 97
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.96 E-value=3.9e-29 Score=252.63 Aligned_cols=322 Identities=11% Similarity=0.078 Sum_probs=219.5
Q ss_pred CEEEeeccCcccccCCCCCHHH--HHHHHHHHhhcccccCCCCCH-HHHHHHHHHhhcc-----C--CCe---EEecCCH
Q 013008 98 REYLDLSSGIAVNALGHGDADW--IKAVVDQANVLTHVSNMYYSI-PQIELAKRLVACS-----F--ADR---VFFSNTG 164 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v--~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~-----~--~e~---v~~~~sG 164 (451)
+++|||.+|.+. .+|+ +|.+ .+++.+++++... ..|... ...++.+.+++++ + .++ |++++||
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~ 122 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDEI--FPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNAL 122 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGGT--SSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcccc--cccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCc
Confidence 568999998764 5774 5666 7777766644111 112111 1345555555554 4 567 9999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh-ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC
Q 013008 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ 243 (451)
Q Consensus 165 ~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 243 (451)
++|++.+++++. .++|+|++.+|+||++...... .+. .... .+..+... ..|+++|+++++
T Consensus 123 ~~al~~~~~~l~-----------~~gd~Vl~~~p~y~~~~~~~~~~~g~-~~~~---~~~~~~~~---~~d~~~l~~~l~ 184 (430)
T 2x5f_A 123 THGLSLVGDLFV-----------NQDDTILLPEHNWGNYKLVFNTRNGA-NLQT---YPIFDKDG---HYTTDSLVEALQ 184 (430)
T ss_dssp HHHHHHHHHHHC-----------CTTCEEEEESSCCTHHHHHHTTTTCC-EEEE---ECCBCTTS---CBCSHHHHHHHH
T ss_pred hHHHHHHHHHHh-----------CCCCEEEEcCCcCccHHHHHHHhcCC-eEEE---EeccCccC---CcCHHHHHHHHH
Confidence 999999999764 1589999999999998655433 221 1111 11111000 127899999886
Q ss_pred C--CCeEE-EEEccccCCCCccccCHHHHHHHHHHHHH-----hCCEEEEeccccCCCcccccc-cc--cccCCCcc---
Q 013008 244 P--GKTAA-VFVEPIQGEGGIYSATKEFLQFLRDACDD-----AGALLVFDEVQCGLGRTGYLW-AH--EHYGIFPD--- 309 (451)
Q Consensus 244 ~--~~~aa-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~-----~g~llI~DEv~tg~gr~G~~~-~~--~~~~~~pd--- 309 (451)
+ .++++ ++++| ++++|. .++.+++++|+++|++ ||+++|+||+|++|.+.|..+ .. ...+..++
T Consensus 185 ~~~~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (430)
T 2x5f_A 185 SYNKDKVIMILNYP-NNPTGY-TPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAIL 262 (430)
T ss_dssp HCCSSEEEEEECSS-CTTTCC-CCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEE
T ss_pred hcCCCCEEEEEcCC-CCCCCC-cCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcce
Confidence 3 24555 55556 555665 5789999999999999 999999999999887666421 11 22232333
Q ss_pred ---eeeeccccc-CCcccccccc---cHHHHhhccCCCcc----CCCCCcHHHHHHHHHHHH-H---hcC-hHHHHH---
Q 013008 310 ---IMTLAKPLA-GGLPIGAALV---TEKVASAINYGDHG----STFAGSPLVCNAAIAVLD-K---ISN-PAFLAS--- 370 (451)
Q Consensus 310 ---i~t~sK~lg-~G~~iG~v~~---~~~i~~~~~~~~~~----~t~~~~~~~~aaa~aal~-~---~~~-~~~~~~--- 370 (451)
+.++||.++ +|+|+||+++ ++++++.+...... .+++.|+++++++.++|+ . .+. +...++
T Consensus 263 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 342 (430)
T 2x5f_A 263 PIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKE 342 (430)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 458899998 6899999999 99998887643333 678899999999999998 3 211 001111
Q ss_pred -------HHh----CCCCcceeccc-ceeEEEEec-CChHHHHHHHHH-CCceeeecCCCCEEEEeCCCCCCHHHHHHHH
Q 013008 371 -------KLA----RNPHVKDVRGL-GLIIGIEFD-VSATPVVDACRD-SGLLVLTAGKGNVVRLVPPLIISEQELDQAV 436 (451)
Q Consensus 371 -------~~~----~~~~~~~v~g~-G~~~~~~~~-~~~~~~~~~l~~-~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l 436 (451)
.++ .. .+..+.+. |+++++.+. .+..++++.|++ +||++.|++. +.+|++++. .+++++++++
T Consensus 343 ~~~~l~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~-~~iRis~~~-~~~e~i~~~~ 419 (430)
T 2x5f_A 343 RYEVTKEVVYADQYHS-HWQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNA-TDIRIAFSC-VEKDDIPHVF 419 (430)
T ss_dssp HHHHHHHHHTCGGGTT-TEEECCCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEECSS-SEEEEEGGG-SCGGGHHHHH
T ss_pred HHHHHHHHHHhhCCCC-CceeeCCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCC-CeEEEEEec-CCHHHHHHHH
Confidence 222 22 23333444 566888874 457789999998 9999999744 789998885 4999999999
Q ss_pred HHHHHHHHHH
Q 013008 437 EILCKTLPVL 446 (451)
Q Consensus 437 ~~l~~~l~~~ 446 (451)
++|+++++++
T Consensus 420 ~~l~~~l~~~ 429 (430)
T 2x5f_A 420 DSIAKAIDDL 429 (430)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 98
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.96 E-value=8.4e-28 Score=242.64 Aligned_cols=323 Identities=15% Similarity=0.083 Sum_probs=211.6
Q ss_pred EEEeeccCcccccCCCCCHHHHHHHHHHH------------hhcccccCC-CCCHHHHHHHHHHhhcc------CCCeEE
Q 013008 99 EYLDLSSGIAVNALGHGDADWIKAVVDQA------------NVLTHVSNM-YYSIPQIELAKRLVACS------FADRVF 159 (451)
Q Consensus 99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~------------~~~~~~~~~-~~~~~~~~l~~~l~~~~------~~e~v~ 159 (451)
.+|||.++.. ++| +|.+.+++.++. .....+... +..+.+..+++.+.+.+ ..++++
T Consensus 37 ~~i~l~~~~~--~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~ 112 (428)
T 1iay_A 37 GVIQMGLAEN--QLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV 112 (428)
T ss_dssp SBEECSSCCC--CSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred ceeeeccccc--hhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEE
Confidence 5788887653 454 478888887532 111111111 12233555555554432 267899
Q ss_pred ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHH
Q 013008 160 FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATR 239 (451)
Q Consensus 160 ~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 239 (451)
+++|+++|++.++++++ .++++|++.+|+||++........+..... .+...+..+ ..|+++|+
T Consensus 113 ~~~G~~~ai~~~~~~~~-----------~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~---v~~~~~~~~--~~d~~~l~ 176 (428)
T 1iay_A 113 MAGGATGANETIIFCLA-----------DPGDAFLVPSPYYPAFNRDLRWRTGVQLIP---IHCESSNNF--KITSKAVK 176 (428)
T ss_dssp EEEHHHHHHHHHHHHHC-----------CTTCEEEEESSCCTTHHHHTTTTTCCEEEE---ECCCTTTTT--CCCHHHHH
T ss_pred EccChHHHHHHHHHHhC-----------CCCCeEEEccCCCcchHHHHHHhcCCEEEE---eecCCccCC--cCCHHHHH
Confidence 99999999999999765 157899999999998764332222221111 111100000 02789999
Q ss_pred HhcCC-----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccc-ccccc-------CC
Q 013008 240 KLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLW-AHEHY-------GI 306 (451)
Q Consensus 240 ~~l~~-----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~-~~~~~-------~~ 306 (451)
++++. .++++|+++..++++|. +++.+++++|+++|++||++||+||+|+++++.|..+ ....+ ++
T Consensus 177 ~~l~~~~~~~~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (428)
T 1iay_A 177 EAYENAQKSNIKVKGLILTNPSNPLGT-TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYC 255 (428)
T ss_dssp HHHHHHHHTTCCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTS
T ss_pred HHHHHHHhcCCceEEEEEcCCCCCCCC-cCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccC
Confidence 88852 35777666555566665 5689999999999999999999999999876555321 11111 22
Q ss_pred Ccc----eeeeccccc-CCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc-ChHHHHH---------
Q 013008 307 FPD----IMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLAS--------- 370 (451)
Q Consensus 307 ~pd----i~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~--------- 370 (451)
.+| +.++||++| +|+|+|++++ ++++++.+... ..+++.|+++++++.++|+... -+++.++
T Consensus 256 ~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 333 (428)
T 1iay_A 256 NKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKM--SSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRH 333 (428)
T ss_dssp CTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHH--HTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHH--HhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 366 568999998 7899999998 68888877532 3346788999998888776321 0011111
Q ss_pred -----HHhCCCCcceecc-cceeEEEEecC--------ChHHHHHHHHHC-CceeeecCC-----CCEEEEeCCCCCCHH
Q 013008 371 -----KLARNPHVKDVRG-LGLIIGIEFDV--------SATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQ 430 (451)
Q Consensus 371 -----~~~~~~~~~~v~g-~G~~~~~~~~~--------~~~~~~~~l~~~-Gv~~~~~~~-----~~~iri~~~~~~t~e 430 (451)
.++.+. +..+++ .|+++++++.. ...++.+.|+++ ||++.++.. ++.+|++++ .++++
T Consensus 334 ~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e 411 (428)
T 1iay_A 334 KHFTNGLEVVG-IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDG 411 (428)
T ss_dssp HHHHHHHHHTT-CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHH
T ss_pred HHHHHHHHhcC-CcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHH
Confidence 122232 333344 57888888842 234788899886 999988641 268999987 57999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013008 431 ELDQAVEILCKTLPVL 446 (451)
Q Consensus 431 ~i~~~l~~l~~~l~~~ 446 (451)
++++++++|++++++.
T Consensus 412 ~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 412 TVDIALARIRRFVGVE 427 (428)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999988653
No 99
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.96 E-value=4.1e-27 Score=234.34 Aligned_cols=319 Identities=19% Similarity=0.159 Sum_probs=213.4
Q ss_pred CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC--CCCCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHH
Q 013008 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN--MYYSIPQIELAKRLVACSF----ADRVFFSNTGTEANEA 170 (451)
Q Consensus 97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~ 170 (451)
|+.+|||..+.+ .++ .+|.+.+++.++++.....+. .+..+.+.++++++.+.++ .++|++|+||++|+..
T Consensus 30 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~ 106 (385)
T 1b5p_A 30 GVDLVALTAGEP--DFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFN 106 (385)
T ss_dssp TCCCEECCCSSC--SSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHH
T ss_pred CCCEEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHH
Confidence 556788888765 344 468999999988865322111 1123346677777765544 5789999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC--CeeEeeCCCHHHHHHhcCCCCeE
Q 013008 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP--GVNFVEYGNIEATRKLIQPGKTA 248 (451)
Q Consensus 171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~le~~l~~~~~a 248 (451)
+++.+. .++|+|++.+|+|+++....... |..... .+..+ +.. .|+++|++++.+ +++
T Consensus 107 ~~~~l~-----------~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~---v~~~~~~~~~----~d~~~l~~~l~~-~~~ 166 (385)
T 1b5p_A 107 LFQAIL-----------DPGDEVIVLSPYWVSYPEMVRFA-GGVVVE---VETLPEEGFV----PDPERVRRAITP-RTK 166 (385)
T ss_dssp HHHHHC-----------CTTCEEEEEESCCTHHHHHHHHT-TCEEEE---EECCGGGTTC----CCHHHHHTTCCT-TEE
T ss_pred HHHHhc-----------CCCCEEEEcCCCchhHHHHHHHc-CCEEEE---eecCcccCCC----CCHHHHHHhcCC-CCE
Confidence 998664 16899999999998776443322 211100 11111 000 278999999975 455
Q ss_pred EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccccc--CCCcceeeeccccc-CCccccc
Q 013008 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY--GIFPDIMTLAKPLA-GGLPIGA 325 (451)
Q Consensus 249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~--~~~pdi~t~sK~lg-~G~~iG~ 325 (451)
+|++...++++|. +++.+.+++|.++|++||++||+||+|..+...|.......+ +....+.+|||.++ .|+|+||
T Consensus 167 ~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~ 245 (385)
T 1b5p_A 167 ALVVNSPNNPTGA-VYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGY 245 (385)
T ss_dssp EEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEE
T ss_pred EEEEeCCCCCCCC-CcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEE
Confidence 5554333444454 568999999999999999999999999887554421122222 22223448999998 5899999
Q ss_pred ccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH---hcChHHHHH--------------HHhCCCCcceecc-ccee
Q 013008 326 ALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK---ISNPAFLAS--------------KLARNPHVKDVRG-LGLI 387 (451)
Q Consensus 326 v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~---~~~~~~~~~--------------~~~~~~~~~~v~g-~G~~ 387 (451)
+++++++++.+.......+++.+++++.++.++|+. . .+++++ .++++ .+....+ .|++
T Consensus 246 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 322 (385)
T 1b5p_A 246 ACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEAS--RAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFY 322 (385)
T ss_dssp EECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTE
T ss_pred EEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEE
Confidence 999999988876544445677889999988888863 1 122211 12222 2222233 3456
Q ss_pred EEEEec---CChHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008 388 IGIEFD---VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLP 444 (451)
Q Consensus 388 ~~~~~~---~~~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~ 444 (451)
+++.+. .+..++.+.|.++||.+.|+.. .+.+|+++. ++++++++++++|.++++
T Consensus 323 ~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 323 VLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp EEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred EEEecCCCCCCHHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 666663 3577899999999999988632 368999755 799999999999988764
No 100
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.96 E-value=7.7e-28 Score=237.14 Aligned_cols=302 Identities=16% Similarity=0.160 Sum_probs=210.8
Q ss_pred CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHH
Q 013008 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFA 175 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a 175 (451)
+++|||.+|.. ++|+. |.+ + +... ..|+.....++.+.++++++ .++|++++|+++|++.+++++
T Consensus 29 ~~~i~l~~~~~--~~~~~-~~v--a----~~~~----~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~ 95 (356)
T 1fg7_A 29 NGDVWLNANEY--PTAVE-FQL--T----QQTL----NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF 95 (356)
T ss_dssp TCSEECSSCCC--SSCCC-CCC--C----CCCT----TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH
T ss_pred CceEEeeCCCC--CCCCC-HhH--h----hhhh----ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHH
Confidence 57899999864 68864 555 2 2211 12222225678888888887 579999999999999999976
Q ss_pred HHHhhhcCCCCCCCC-ceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEcc
Q 013008 176 RKFQRHSNPDSKEPA-TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (451)
Q Consensus 176 ~~~~~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep 254 (451)
. .++ ++|++.+|+||++.......+.... . .+...+.. .|++++++.++ ++++|+++.
T Consensus 96 ~-----------~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~-~---v~~~~~~~----~d~~~l~~~i~--~~~~v~l~~ 154 (356)
T 1fg7_A 96 C-----------EPGKDAILYCPPTYGMYSVSAETIGVECR-T---VPTLDNWQ----LDLQGISDKLD--GVKVVYVCS 154 (356)
T ss_dssp C-----------CTTTCEEEECSSSCTHHHHHHHHHTCEEE-E---CCCCTTSC----CCHHHHHTSCT--TEEEEEEES
T ss_pred h-----------CCCCCEEEEeCCChHHHHHHHHHcCCEEE-E---eeCCCCCC----CCHHHHHHHhc--CCCEEEEeC
Confidence 4 146 8999999999998765544332211 1 11111111 27999999886 567777766
Q ss_pred ccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccc-cccCCCcceeeeccccc-CCcccccccccHHH
Q 013008 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAH-EHYGIFPDIMTLAKPLA-GGLPIGAALVTEKV 332 (451)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~-~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~i 332 (451)
+++++|. ..+.+++++|+++|+ ||+++|+||+|++|+........ +.++....+.++||.+| +|+|+||+++++++
T Consensus 155 p~nptG~-~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 232 (356)
T 1fg7_A 155 PNNPTGQ-LINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEV 232 (356)
T ss_dssp SCTTTCC-CCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHH
T ss_pred CCCCCCC-CCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHH
Confidence 6666675 568899999999999 99999999999988632222221 22333445668999998 78999999999999
Q ss_pred HhhccCCCccCCCCCcHHHHHHHHHHHHHhcC---hHHHHH----------HHhCCCC-cceecccceeEEEEecCChHH
Q 013008 333 ASAINYGDHGSTFAGSPLVCNAAIAVLDKISN---PAFLAS----------KLARNPH-VKDVRGLGLIIGIEFDVSATP 398 (451)
Q Consensus 333 ~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~----------~~~~~~~-~~~v~g~G~~~~~~~~~~~~~ 398 (451)
++.+... ..+|+.|+++++++.++|+.... +...++ .+++++. ....++.|.++++.+. +..+
T Consensus 233 ~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~ 309 (356)
T 1fg7_A 233 INLLMKV--IAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK-ASSA 309 (356)
T ss_dssp HHHHHHH--SCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET-THHH
T ss_pred HHHHHHh--cCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC-CHHH
Confidence 9887642 34567899999999888863210 111111 2233453 2334567888888885 5778
Q ss_pred HHHHHHHCCceeee-cCC---CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008 399 VVDACRDSGLLVLT-AGK---GNVVRLVPPLIISEQELDQAVEILCK 441 (451)
Q Consensus 399 ~~~~l~~~Gv~~~~-~~~---~~~iri~~~~~~t~e~i~~~l~~l~~ 441 (451)
+.+.|.++||++.+ +.. .+.+|++++ +++++++++++|++
T Consensus 310 l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 310 VFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRA 353 (356)
T ss_dssp HHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred HHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 99999999999998 421 358999865 68999999998875
No 101
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.96 E-value=4.9e-27 Score=236.94 Aligned_cols=287 Identities=12% Similarity=0.079 Sum_probs=203.3
Q ss_pred CCHHHHHHHHHHhhccC--C---------CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhh
Q 013008 138 YSIPQIELAKRLVACSF--A---------DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMG 206 (451)
Q Consensus 138 ~~~~~~~l~~~l~~~~~--~---------e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~ 206 (451)
..+.+.++++++.+.++ . ++|++|+|+++|+..+++++. .++|.|++.+|+|+++...
T Consensus 80 ~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-----------~~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 80 IPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-----------NPGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp CHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-----------CCCCEEEEeCCCcHHHHHH
Confidence 34457777777776555 2 589999999999999999764 2689999999999987654
Q ss_pred hhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----------CCeEEEEEccc-cCCCCccccCHHHHHHHHH
Q 013008 207 ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----------GKTAAVFVEPI-QGEGGIYSATKEFLQFLRD 274 (451)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----------~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~ 274 (451)
.... +..... .+...+ . .|+++|+++++. .++++|++.|. ++++| .+++.+++++|++
T Consensus 149 ~~~~-g~~~~~---v~~~~~-~----~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG-~~~~~~~l~~l~~ 218 (425)
T 2r2n_A 149 LHPL-GCNIIN---VASDES-G----IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTG-NSLTSERKKEIYE 218 (425)
T ss_dssp HGGG-TCEEEE---ECEETT-E----ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTC-CCCCHHHHHHHHH
T ss_pred HHHc-CCEEEE---eCcCCC-C----CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCC-CcCCHHHHHHHHH
Confidence 4322 211111 011111 0 278999999862 35778888764 44455 4678999999999
Q ss_pred HHHHhCCEEEEeccccCCCccccc----ccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHH
Q 013008 275 ACDDAGALLVFDEVQCGLGRTGYL----WAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPL 350 (451)
Q Consensus 275 l~~~~g~llI~DEv~tg~gr~G~~----~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~ 350 (451)
+|++||++||+||+|+++.+.|.. ...+..+..+.+.+|||++++|+|+||+++++++++.+.......+++.|++
T Consensus 219 ~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~ 298 (425)
T 2r2n_A 219 LARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVILHIQVSTLHPSTF 298 (425)
T ss_dssp HHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHHHHHHTTTCSSCHH
T ss_pred HHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHHHHHHHhcCCCCHH
Confidence 999999999999999987665532 2222223445567999999989999999999999988865445567888999
Q ss_pred HHHHHHHHHHHhcCh---HHHHH---------------HHhCCCCc-ce-ecccceeEEEEecC--ChHH-HHHHHHHCC
Q 013008 351 VCNAAIAVLDKISNP---AFLAS---------------KLARNPHV-KD-VRGLGLIIGIEFDV--SATP-VVDACRDSG 407 (451)
Q Consensus 351 ~~aaa~aal~~~~~~---~~~~~---------------~~~~~~~~-~~-v~g~G~~~~~~~~~--~~~~-~~~~l~~~G 407 (451)
+++++.++|+.+.++ ++.++ +.+.+|.+ .. .+..|+++|+.+.. +..+ +.+.|.++|
T Consensus 299 ~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~g 378 (425)
T 2r2n_A 299 NQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMG 378 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTT
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCC
Confidence 999999988753211 11111 22224433 22 24567888988842 4455 578888999
Q ss_pred ceeeecCC--------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 408 LLVLTAGK--------GNVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 408 v~~~~~~~--------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
|.+.|+.. .+.+|++++. .+++++++++++|.+++++.
T Consensus 379 v~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 379 VLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp EECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred cEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence 99988531 2679998764 59999999999999998753
No 102
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.96 E-value=3.2e-28 Score=244.37 Aligned_cols=324 Identities=11% Similarity=0.012 Sum_probs=208.0
Q ss_pred CCCEEEeeccCcccccCCC--CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-C-------CCeEEe--cCC
Q 013008 96 EGREYLDLSSGIAVNALGH--GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-F-------ADRVFF--SNT 163 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-------~e~v~~--~~s 163 (451)
+|+.+|||..|.+....|+ .+|.+.+++.+++++......+.......+|.+.+++++ + .++|++ |+|
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~g 107 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLG 107 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCC
Confidence 3677899999986555555 458999999988732111111112222345555555544 2 589999 999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCC-----ceEEEEcCCccCChhhhhhccCC-CCcCCCCcCCC--CCeeEeeCCCH
Q 013008 164 GTEANEAAIKFARKFQRHSNPDSKEPA-----TEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVM--PGVNFVEYGNI 235 (451)
Q Consensus 164 G~eA~~~al~~a~~~~~~~~~~~~~~~-----~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~d~ 235 (451)
|++|++.+++++..+. ++ ++|++.+|+||++.......+.. .. . .+.. .+.. .|+
T Consensus 108 g~~a~~~~~~~~~~~~---------~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~-~---~~~~~~~~~~----~d~ 170 (412)
T 1ajs_A 108 GTGALRIGAEFLARWY---------NGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIR-S---YRYWDTEKRG----LDL 170 (412)
T ss_dssp HHHHHHHHHHHHHHHS---------SSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEE-E---EECEETTTTE----ECH
T ss_pred cHHHHHHHHHHHHHhC---------cCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeE-E---EeeecCCCCc----cCH
Confidence 9999999988665442 46 89999999999987554443322 11 1 0110 0111 178
Q ss_pred HHHHHhcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc---ccccccccCCCcc-
Q 013008 236 EATRKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG---YLWAHEHYGIFPD- 309 (451)
Q Consensus 236 ~~le~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G---~~~~~~~~~~~pd- 309 (451)
++|++.+.+ .++.++++...++++|. +++.+++++|+++|++||++||+||+|++|++.| .......+...+|
T Consensus 171 ~~l~~~l~~~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~ 249 (412)
T 1ajs_A 171 QGFLSDLENAPEFSIFVLHACAHNPTGT-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFE 249 (412)
T ss_dssp HHHHHHHHHSCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCcEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCc
Confidence 999998863 24555544444444454 6799999999999999999999999999998775 3323332211233
Q ss_pred ---eeeecccccC-Ccccccccc---cHHHHh----hccCCCccCCCC-CcHHHHHHHHHHHHHhc-----C---hHHHH
Q 013008 310 ---IMTLAKPLAG-GLPIGAALV---TEKVAS----AINYGDHGSTFA-GSPLVCNAAIAVLDKIS-----N---PAFLA 369 (451)
Q Consensus 310 ---i~t~sK~lg~-G~~iG~v~~---~~~i~~----~~~~~~~~~t~~-~~~~~~aaa~aal~~~~-----~---~~~~~ 369 (451)
+.++||++++ |+|+||+++ ++++++ .+.. .+..+++ .|+++++++.++|+... . ++..+
T Consensus 250 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1ajs_A 250 LFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQK-IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMAD 328 (412)
T ss_dssp EEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH-HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred EEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHH-HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHH
Confidence 5589999997 999999998 887443 3332 1334555 58999999998887431 0 11111
Q ss_pred H----------HHhCCC---Ccceecc-cceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHH
Q 013008 370 S----------KLARNP---HVKDVRG-LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA 435 (451)
Q Consensus 370 ~----------~~~~~~---~~~~v~g-~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~ 435 (451)
+ .+++++ .+..+.+ .|+++++.++ ...+...+.++||++.++ +|++++. +++++++++
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gv~v~~~-----~Ris~~~-~~~~~i~~~ 400 (412)
T 1ajs_A 329 RILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN--PKQVEYLINQKHIYLLPS-----GRINMCG-LTTKNLDYV 400 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC--HHHHHHHHHTTCEECCTT-----SEEEGGG-CCTTTHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC--HHHHHHHHHhCCEEecCC-----cEEEeee-CCHHHHHHH
Confidence 1 222232 1322233 4566655443 344444555789999864 5887663 489999999
Q ss_pred HHHHHHHHHHH
Q 013008 436 VEILCKTLPVL 446 (451)
Q Consensus 436 l~~l~~~l~~~ 446 (451)
+++|+++++++
T Consensus 401 ~~~l~~~l~~~ 411 (412)
T 1ajs_A 401 ATSIHEAVTKI 411 (412)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 103
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.95 E-value=9.6e-28 Score=242.52 Aligned_cols=327 Identities=12% Similarity=0.074 Sum_probs=209.1
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccc--ccCCCC-CHHHHHHHHHHhhcc----C--CCeEEecCCHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH--VSNMYY-SIPQIELAKRLVACS----F--ADRVFFSNTGTE 166 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~-~~~~~~l~~~l~~~~----~--~e~v~~~~sG~e 166 (451)
+|+++|||.++.+. -..+|.|.+|+.+++++... ....+. .....+|.+.+++++ + .++|++++|+++
T Consensus 54 ~~~~~i~l~~~~~~---~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~ 130 (432)
T 3ei9_A 54 PDAQVISLGIGDTT---EPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKC 130 (432)
T ss_dssp TTCCCEECSSCCCC---SCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHH
T ss_pred CCCCeEEccCCCCC---CCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHH
Confidence 57899999999763 35899999999999986432 111222 222455666666653 3 679999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC-CC
Q 013008 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-PG 245 (451)
Q Consensus 167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~ 245 (451)
++..+ ..+. + ++|.|++.+|+|+++............+.. .......+..++.++.+.+...++ ..
T Consensus 131 al~~l-~~l~---~--------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 197 (432)
T 3ei9_A 131 DISRL-QVMF---G--------SNVTIAVQDPSYPAYVDSSVIMGQTGQFNT-DVQKYGNIEYMRCTPENGFFPDLSTVG 197 (432)
T ss_dssp HHHHH-HHHH---C--------TTCCEEEEESCCTHHHHHHHHHTCSCCEET-TTTEETTCEEEECCGGGTTSCCGGGCC
T ss_pred HHHHH-HHHc---C--------CCCEEEEeCCCCHHHHHHHHHcCCcccccc-cccccCceEEeccCcccCCcCChhhCC
Confidence 99874 3322 1 689999999999998765544332111100 000001233444432111111111 23
Q ss_pred CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccccccc----CCCcceeeeccccc-CC
Q 013008 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY----GIFPDIMTLAKPLA-GG 320 (451)
Q Consensus 246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~----~~~pdi~t~sK~lg-~G 320 (451)
++++|+++..++++|. +++.+++++|+++|++||++||+||+|++|...+.......+ +....+.++||++| +|
T Consensus 198 ~~~~v~l~~p~NPtG~-~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 276 (432)
T 3ei9_A 198 RTDIIFFCSPNNPTGA-AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG 276 (432)
T ss_dssp CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT
T ss_pred CCCEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc
Confidence 4555555555555564 678999999999999999999999999987554433222222 23344668999998 79
Q ss_pred cccccccccHHH--------HhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHHHH--------------HHhCCCCc
Q 013008 321 LPIGAALVTEKV--------ASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFLAS--------------KLARNPHV 378 (451)
Q Consensus 321 ~~iG~v~~~~~i--------~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~--------------~~~~~~~~ 378 (451)
+|+||+++++++ ++.+.......+++.++++++++.++++... .+++++ .++++. +
T Consensus 277 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g-~ 354 (432)
T 3ei9_A 277 VRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG-LEAMHKVIGFYKENTNIIIDTFTSLG-Y 354 (432)
T ss_dssp TCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred cceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHCC-c
Confidence 999999998887 5555433333455678999998888874210 111111 222232 3
Q ss_pred ceec-ccceeEEEEec-CChHHHHHHHHHC-CceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 379 KDVR-GLGLIIGIEFD-VSATPVVDACRDS-GLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 379 ~~v~-g~G~~~~~~~~-~~~~~~~~~l~~~-Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
.... ..|.++++.+. ....++++.|+++ ||++.|+.. .+++|++ +..++|+|++++++|++--
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 355 DVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AFGHRENILEACRRFKQLY 425 (432)
T ss_dssp CEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHH
T ss_pred eecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHh
Confidence 3333 35778888884 4567788888865 999987521 3678987 4669999999999998754
No 104
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.95 E-value=2.8e-28 Score=245.71 Aligned_cols=329 Identities=11% Similarity=0.016 Sum_probs=223.8
Q ss_pred EEeeccCcccccCCCCCHHHHHHHH--HHHhhcccccCCC--CCHHHHHHHHHHhhccC--CCeEEecCCHHHHHH--HH
Q 013008 100 YLDLSSGIAVNALGHGDADWIKAVV--DQANVLTHVSNMY--YSIPQIELAKRLVACSF--ADRVFFSNTGTEANE--AA 171 (451)
Q Consensus 100 ~iD~~~~~~~~~lG~~~p~v~~a~~--~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~--~a 171 (451)
.|||..|.+...+...+|.+.+++. +.++. ......| ......+|.+.++++++ .++|++|+|+++|+. .+
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~ 105 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMD-GLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVL 105 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEET-TEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhc-chhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHH
Confidence 4788777664434445667877775 43332 1111222 22235688888888886 679999999999997 88
Q ss_pred HHHHHHHhhhcCCCCCCC--------CceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC
Q 013008 172 IKFARKFQRHSNPDSKEP--------ATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ 243 (451)
Q Consensus 172 l~~a~~~~~~~~~~~~~~--------~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 243 (451)
++++.... ++ +++|++.+|+|+++.......+.... . .+...+. .|+++|+++++
T Consensus 106 ~~~l~~~~--------~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-~---v~~~~~g-----~d~~~l~~~l~ 168 (423)
T 3ez1_A 106 TFALLHGV--------RGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELL-T---VDMQSDG-----PDVDAVERLAG 168 (423)
T ss_dssp HHHHHTCC--------TTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEE-E---EEEETTE-----ECHHHHHHHHH
T ss_pred HHHHhccC--------CCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEE-e---ccCCCCC-----CCHHHHHHHHh
Confidence 88665200 01 58999999999988655433322111 0 0111110 28999999995
Q ss_pred -CCCeEEEEEccccCCCCccccCHHHHHHHHHHH-HHhCCEEEEeccccCCCccc-c------cccc----cccCCCcce
Q 013008 244 -PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDAC-DDAGALLVFDEVQCGLGRTG-Y------LWAH----EHYGIFPDI 310 (451)
Q Consensus 244 -~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tg~gr~G-~------~~~~----~~~~~~pdi 310 (451)
..++++|+++|..+|+++.+++.+.+++|+++| ++||+++|+||+|..+...+ . .+.. +..+....+
T Consensus 169 ~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (423)
T 3ez1_A 169 TDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248 (423)
T ss_dssp SCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred hCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence 457889988875444434567888999999999 99999999999998543222 1 1111 123344557
Q ss_pred eeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH---------------HHh
Q 013008 311 MTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PAFLAS---------------KLA 373 (451)
Q Consensus 311 ~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~---------------~~~ 373 (451)
.+|||.+.+|+|+||+++++++++.+.......+++.+++++.++.++|+.+.. ..++++ +.+
T Consensus 249 ~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 328 (423)
T 3ez1_A 249 ASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRA 328 (423)
T ss_dssp EESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCchhhccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999767999999999999999887655667788899999999888875111 112111 222
Q ss_pred CCCC----cce-ecccceeEEEEec-CChHHHHHHHHHCCceeeecC---------CCCEEEEeCCCCCCHHHHHHHHHH
Q 013008 374 RNPH----VKD-VRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG---------KGNVVRLVPPLIISEQELDQAVEI 438 (451)
Q Consensus 374 ~~~~----~~~-v~g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~---------~~~~iri~~~~~~t~e~i~~~l~~ 438 (451)
.++. +.. ....|+++++.+. .....+.+.|.++||++.|++ ..+.+||+++.. +++++++++++
T Consensus 329 ~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~ 407 (423)
T 3ez1_A 329 ELGEGGEYATWTLPKGGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQV 407 (423)
T ss_dssp HHTTTTSSEEECCCSBSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHH
T ss_pred hcCcCCCceEEeCCCccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHH
Confidence 2222 221 2345788899884 356788888999999999832 136899988655 99999999999
Q ss_pred HHHHHHHHh
Q 013008 439 LCKTLPVLD 447 (451)
Q Consensus 439 l~~~l~~~~ 447 (451)
|.++++++.
T Consensus 408 l~~~l~~~~ 416 (423)
T 3ez1_A 408 VAACIRLAT 416 (423)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 105
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.95 E-value=2.9e-27 Score=235.11 Aligned_cols=313 Identities=14% Similarity=0.098 Sum_probs=219.6
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC----CCCC--HHHHHHHHHHhhccC--CCeEEecCCHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN----MYYS--IPQIELAKRLVACSF--ADRVFFSNTGTEA 167 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~----~~~~--~~~~~l~~~l~~~~~--~e~v~~~~sG~eA 167 (451)
++..|+|.. ..|+.+|++.+++.+++.+..+... .+.. ....++++.++++++ .+++++++||++|
T Consensus 15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 88 (390)
T 1elu_A 15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 88 (390)
T ss_dssp TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence 355666643 2578889999999999876432111 1222 447889999999987 4589999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhh---hccCCCCcCCCCcCCC--CCeeEeeCCCHHHHHHhc
Q 013008 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL---ALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLI 242 (451)
Q Consensus 168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l 242 (451)
++.++++++ . .++++|++.+++||+...... ...+..... .+.. .+. ..|+++|++.+
T Consensus 89 ~~~~~~~~~--~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~~~----~~d~~~l~~~i 151 (390)
T 1elu_A 89 CDIVLWGLD--W--------HQGDEILLTDCEHPGIIAIVQAIAARFGITYRF---FPVAATLNQ----GDAAAVLANHL 151 (390)
T ss_dssp HHHHHHHSC--C--------CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEE---ECCGGGSSS----SCHHHHHHTTC
T ss_pred HHHHHhCCC--C--------CCCCEEEEecCcccHHHHHHHHHHHHhCcEEEE---EcCCCCCCc----cchHHHHHHhc
Confidence 999999763 1 158899999999998764321 111211110 0110 000 12789999999
Q ss_pred CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHH----HhCCEEEEeccccCCCcccccccccccCCCcceee--eccc
Q 013008 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACD----DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKP 316 (451)
Q Consensus 243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~----~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~ 316 (451)
++ ++++|+++++++++|.+.+ +++|+++|+ +||+++|+||+|+ +|... .+.....+|+++ ++|.
T Consensus 152 ~~-~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~----~~~~~~~~d~~~~s~~K~ 221 (390)
T 1elu_A 152 GP-KTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP----LDFSRLEVDYYAFTGHKW 221 (390)
T ss_dssp CT-TEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC----CCTTTSCCSEEEEESSST
T ss_pred CC-CceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC----CChhhcCCCEEEcccccc
Confidence 74 6888999998888888776 999999999 9999999999996 54332 111233567765 8997
Q ss_pred ccCCcccccccccHHHHhhccCCC----------------------ccCCCCCcHHHHHHHHHHHHHhcChH----HHHH
Q 013008 317 LAGGLPIGAALVTEKVASAINYGD----------------------HGSTFAGSPLVCNAAIAVLDKISNPA----FLAS 370 (451)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~~~~~~----------------------~~~t~~~~~~~~aaa~aal~~~~~~~----~~~~ 370 (451)
+.+|.++|++++++++++.+.+.. ...+.+.++++++++.++++.+.+.+ ..++
T Consensus 222 ~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~ 301 (390)
T 1elu_A 222 FAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQA 301 (390)
T ss_dssp TCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777788999999999888776421 11123457788887778887654322 1111
Q ss_pred ----------HHhCCCCccee---cccceeEEEEec--CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHH
Q 013008 371 ----------KLARNPHVKDV---RGLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA 435 (451)
Q Consensus 371 ----------~~~~~~~~~~v---~g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~ 435 (451)
.+++++.+..+ ++.|.++.+.+. ....++.+.|.++||.+.++...+.+|++++..+++++++++
T Consensus 302 ~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~ 381 (390)
T 1elu_A 302 ICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHL 381 (390)
T ss_dssp HHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHH
Confidence 23334444333 456788888873 357789999999999999875347899999899999999999
Q ss_pred HHHHHH
Q 013008 436 VEILCK 441 (451)
Q Consensus 436 l~~l~~ 441 (451)
+++|++
T Consensus 382 ~~~l~~ 387 (390)
T 1elu_A 382 LARLAD 387 (390)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 999875
No 106
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=2.4e-26 Score=228.52 Aligned_cols=312 Identities=14% Similarity=0.078 Sum_probs=206.1
Q ss_pred CCCHHHHHHHHHHHhhcccccCCC--CCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHHHhhhc--CCCCC
Q 013008 114 HGDADWIKAVVDQANVLTHVSNMY--YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARKFQRHS--NPDSK 187 (451)
Q Consensus 114 ~~~p~v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~~~~~~--~~~~~ 187 (451)
..+|++.+++.+++.+....+..+ ......++++++++.++ .+++++++||++|+..++++++...... .+...
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~ 120 (397)
T 3f9t_A 41 NVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSK 120 (397)
T ss_dssp CCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 367899999999887532221112 12336688899999887 6689999999999999999887641100 00000
Q ss_pred CCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 013008 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (451)
Q Consensus 188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~aavi~ep~~~~~G~~ 262 (451)
.++++|++.+++|+++....... +. .+..+|.+ |+++|++++++.++++|+++++++++|.+
T Consensus 121 ~~gd~vl~~~~~~~~~~~~~~~~-g~------------~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~ 187 (397)
T 3f9t_A 121 NEHPKIIVPITAHFSFEKGREMM-DL------------EYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTI 187 (397)
T ss_dssp CSSCEEEEETTCCTHHHHHHHHH-TC------------EEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCB
T ss_pred CCCeEEEECCcchhHHHHHHHHc-Cc------------eeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCC
Confidence 14789999999998865443332 21 12233332 89999999975356677777777777877
Q ss_pred ccCHHHHHHHHHHHHHhCCEEEEeccccCCC--cccc---------cccccccCCCcceeeecccccCCcccccccccH-
Q 013008 263 SATKEFLQFLRDACDDAGALLVFDEVQCGLG--RTGY---------LWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTE- 330 (451)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g--r~G~---------~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~- 330 (451)
.+ +++|+++|++||++||+||+|+++. ..+. .+.... ++.+.+.+++|.+++|+++|++++++
T Consensus 188 ~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~ 262 (397)
T 3f9t_A 188 DN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDI 262 (397)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSG
T ss_pred CC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCH
Confidence 66 9999999999999999999998642 2332 222333 55555567889888888999988754
Q ss_pred HHHhhccC---CCc--------cCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceecccceeEE
Q 013008 331 KVASAINY---GDH--------GSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRGLGLIIG 389 (451)
Q Consensus 331 ~i~~~~~~---~~~--------~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g~G~~~~ 389 (451)
.+.+.+.. ... +.+.+.+++++.++++.+....-++..++ .++++.......+.+.+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~ 342 (397)
T 3f9t_A 263 GYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVA 342 (397)
T ss_dssp GGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEE
T ss_pred HHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEE
Confidence 45544421 111 12223356666666665542211122221 2222221111234566667
Q ss_pred EEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008 390 IEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLP 444 (451)
Q Consensus 390 ~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~ 444 (451)
+.+. ...++.+.|.++||++.++..++.+|++++..+++|++++++++|+++++
T Consensus 343 ~~~~-~~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 343 IEDE-DYKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp EECT-THHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred EEeC-CHHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 7664 36789999999999999876558899999999999999999999998864
No 107
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.95 E-value=3.8e-27 Score=237.02 Aligned_cols=326 Identities=11% Similarity=0.034 Sum_probs=215.9
Q ss_pred CCEEEeeccCcc---cccCCCCCHHHHHHHHHHHhhccccc--CCCCCHHHHHHHHHHhhccCCC---eEEecCCHHHHH
Q 013008 97 GREYLDLSSGIA---VNALGHGDADWIKAVVDQANVLTHVS--NMYYSIPQIELAKRLVACSFAD---RVFFSNTGTEAN 168 (451)
Q Consensus 97 G~~~iD~~~~~~---~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~e---~v~~~~sG~eA~ 168 (451)
|..+|||..|.+ ...+. .+|.+.+++.+........+ ..+..+.+.++++++....+.+ ++++|+||++|+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al 115 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLV-FLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGI 115 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBC-CCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHH
T ss_pred CCCeEECCCCcccCCCCCcc-ccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEEECCchHHHH
Confidence 456788888765 12222 57788888776543221111 1123334666777666665667 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC----
Q 013008 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP---- 244 (451)
Q Consensus 169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---- 244 (451)
..+++.+. .++|+|++.+|+|+++.......+.... . .+..+... ..|+++|++.+++
T Consensus 116 ~~~~~~l~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~-~---v~~~~~~~---~~d~~~l~~~l~~~~~~ 177 (418)
T 3rq1_A 116 HHLIHNYT-----------EPGDEVLTADWYWGAYRVICSDTGRTLV-T---YSLFDEHN---NFNHEAFQNRVNELAAK 177 (418)
T ss_dssp HHHHHHHS-----------CTTCEEEEESSCCTHHHHHHHHTTCEEE-E---ECSBCTTS---SBCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-----------CCCCEEEECCCCchhHHHHHHHcCCEEE-E---EeeeCCCC---CcCHHHHHHHHHHhhcc
Confidence 99999654 2689999999999988755443332211 1 11100000 1278999998863
Q ss_pred CCeEEEEEccc-cCCCCccccCHHHHHHHHHHHH------HhCCEEEEeccccCCCcccc---cccccccCCCcc---ee
Q 013008 245 GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACD------DAGALLVFDEVQCGLGRTGY---LWAHEHYGIFPD---IM 311 (451)
Q Consensus 245 ~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~------~~g~llI~DEv~tg~gr~G~---~~~~~~~~~~pd---i~ 311 (451)
+..++++++.. ++++|. +++.+.+++|+++|+ +||+++|+||+|.+|++.|. .+.....++.+| ++
T Consensus 178 ~~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 256 (418)
T 3rq1_A 178 QTNVVVIFNTPGNNPTGY-SIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCV 256 (418)
T ss_dssp CSEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEE
T ss_pred CCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEE
Confidence 44546666644 666665 568888999999999 89999999999999987764 222333455555 22
Q ss_pred --eeccccc-CCcccccccc---cHHHHhhccCCCc----cCCCCCcHHHHHHHHHHHHHhcC-hHHH-------HH---
Q 013008 312 --TLAKPLA-GGLPIGAALV---TEKVASAINYGDH----GSTFAGSPLVCNAAIAVLDKISN-PAFL-------AS--- 370 (451)
Q Consensus 312 --t~sK~lg-~G~~iG~v~~---~~~i~~~~~~~~~----~~t~~~~~~~~aaa~aal~~~~~-~~~~-------~~--- 370 (451)
+|||+++ +|+|+||+++ ++++++.+..... ....+.++++++++.++|+.... +.|. ++
T Consensus 257 ~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 336 (418)
T 3rq1_A 257 CYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRD 336 (418)
T ss_dssp EEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 7999998 6899999998 8999888754211 11235788888888877742100 0011 11
Q ss_pred -------HHhCCCCcceecc-cceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008 371 -------KLARNPHVKDVRG-LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 442 (451)
Q Consensus 371 -------~~~~~~~~~~v~g-~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~ 442 (451)
.++.+ .+..+.+ .|+++++.+ .+..++++.|.++||++.|++ +.+||++. .++++++++++++|+++
T Consensus 337 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~--~~iRis~~-~~~~~~i~~~~~~l~~~ 411 (418)
T 3rq1_A 337 RADIFKQEAAQV-GLPMLPYRGGFFITIPT-DSANAICEELKKEHIYVIALA--NGIRIAAC-GIPKCQMTGLAEKIYNA 411 (418)
T ss_dssp HHHHHHHHHHHH-TCCCCCCCSSSEEEEEC-TTHHHHHHHHHHTTEECEECS--SEEEEEGG-GSCHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCCCCCCceEEEEcCC-CCHHHHHHHHHhCCEEEecCC--CCeEEEEe-cCCHHHHHHHHHHHHHH
Confidence 11222 1222333 355666655 357789999999999999974 67999755 46999999999999999
Q ss_pred HHHHh
Q 013008 443 LPVLD 447 (451)
Q Consensus 443 l~~~~ 447 (451)
++++.
T Consensus 412 l~~~~ 416 (418)
T 3rq1_A 412 MKSLG 416 (418)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 98764
No 108
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.95 E-value=1.3e-27 Score=240.89 Aligned_cols=338 Identities=12% Similarity=0.053 Sum_probs=217.9
Q ss_pred EEeeccCcccccCCCCCHHHHHHHHHHHh-hcccccCCCCCH-HHHHHHHHHhhccC--CCeEEecCCHHHHH--HHHHH
Q 013008 100 YLDLSSGIAVNALGHGDADWIKAVVDQAN-VLTHVSNMYYSI-PQIELAKRLVACSF--ADRVFFSNTGTEAN--EAAIK 173 (451)
Q Consensus 100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~~~~~~-~~~~l~~~l~~~~~--~e~v~~~~sG~eA~--~~al~ 173 (451)
+|||..|.+...+-..+|.+++++.+++. ........|+.. ...+|.+.++++++ .++|++|+|+++|+ ..+++
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~ 113 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW 113 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence 68888876632212245567777765431 111011122222 25677778887776 67999999999997 56666
Q ss_pred HHHHHhhhcCCCCC-C-CCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEE
Q 013008 174 FARKFQRHSNPDSK-E-PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF 251 (451)
Q Consensus 174 ~a~~~~~~~~~~~~-~-~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi 251 (451)
++..... .+.... + .+++|++.+|+|+++.......+.... . .+...+. .|+++|++++++.++++|+
T Consensus 114 ~l~~~~~-~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~-~---v~~~~~g-----~d~~~l~~~l~~~~~~~v~ 183 (422)
T 3d6k_A 114 SYTWGNN-DSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMI-N---VPMTDEG-----PDMGVVRELVKDPQVKGMW 183 (422)
T ss_dssp HHHHCCT-TCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEE-E---EEEETTE-----ECHHHHHHHHTSTTEEEEE
T ss_pred HhcCccc-ccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEE-e---cCCCCCC-----CCHHHHHHHHhcCCCeEEE
Confidence 5542000 000000 0 034799999999988755433322111 1 1111110 2799999999755688888
Q ss_pred EccccCCCCccccCHHHHHHHHHHHH-HhCCEEEEeccccC--CCcccccc-cc-------cccCCCcceeeecccccCC
Q 013008 252 VEPIQGEGGIYSATKEFLQFLRDACD-DAGALLVFDEVQCG--LGRTGYLW-AH-------EHYGIFPDIMTLAKPLAGG 320 (451)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~tg--~gr~G~~~-~~-------~~~~~~pdi~t~sK~lg~G 320 (451)
+.|..+|+++.+++.+++++|.++|+ +||+++|+||+|.. |+..|..+ .. +..+..+++.+|||..++|
T Consensus 184 ~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G 263 (422)
T 3d6k_A 184 TVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAG 263 (422)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTT
T ss_pred EcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcc
Confidence 66654443335779999999999999 99999999999974 65444211 11 1334566677999996679
Q ss_pred cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc-ChHHHHH---------------HHhC---CCCccee
Q 013008 321 LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLAS---------------KLAR---NPHVKDV 381 (451)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~---------------~~~~---~~~~~~v 381 (451)
+|+||+++++++++.+.......+++.|+++++++.++|+... -+++.++ +.+. ++.+..+
T Consensus 264 lriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~ 343 (422)
T 3d6k_A 264 SGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWT 343 (422)
T ss_dssp SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEC
T ss_pred cceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEe
Confidence 9999999999999888654455667889999999988875310 0122211 2221 1223222
Q ss_pred -cccceeEEEEecC-ChHHHHHHHHHCCceeeecCC---------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 382 -RGLGLIIGIEFDV-SATPVVDACRDSGLLVLTAGK---------GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 382 -~g~G~~~~~~~~~-~~~~~~~~l~~~Gv~~~~~~~---------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
...|+++|+.+.. ....+.+.|.++||.+.|++. .+.+||+++. .+++++++++++|+++++++..
T Consensus 344 ~p~~g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 344 SPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp CCSBSSCEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 3357888988853 466788888899999988321 2678997776 7999999999999999987643
No 109
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.95 E-value=3.5e-26 Score=229.52 Aligned_cols=323 Identities=13% Similarity=0.094 Sum_probs=221.9
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc----cCCCC---CHHHHHHHHHHhhccCC---CeEEecCCHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV----SNMYY---SIPQIELAKRLVACSFA---DRVFFSNTGT 165 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~----~~~~~---~~~~~~l~~~l~~~~~~---e~v~~~~sG~ 165 (451)
+|+++++|..+.. ++.+|.+.+++.+++++.... ...+. .....+++++++++++. +++++++||+
T Consensus 25 ~g~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 100 (420)
T 1t3i_A 25 NGHPLVYLDNAAT----SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNAT 100 (420)
T ss_dssp TTEECEECBTTTC----CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCcc----CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChH
Confidence 6778888877655 368899999999998764211 01111 23367899999999886 8999999999
Q ss_pred HHHHHHHHHHHHH-hhhcCCCCCCCCceEEEEcCCccCChhh---hhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHh
Q 013008 166 EANEAAIKFARKF-QRHSNPDSKEPATEFVSFTNSFHGRTMG---ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKL 241 (451)
Q Consensus 166 eA~~~al~~a~~~-~~~~~~~~~~~~~~ii~~~~~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 241 (451)
+|++.++++++.. . .++++|++.+++||+.... .....+..... .+...+.. .|+++|+++
T Consensus 101 ~a~~~~~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~~----~d~~~l~~~ 165 (420)
T 1t3i_A 101 EAINLVAYSWGMNNL--------KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKF---VQLDEQES----FDLEHFKTL 165 (420)
T ss_dssp HHHHHHHHHTHHHHC--------CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEE---ECBCTTSS----BCHHHHHHH
T ss_pred HHHHHHHHHhhhccc--------CCCCEEEECcchhHHHHHHHHHHHHhcCcEEEE---eccCCCCC----cCHHHHHHh
Confidence 9999999987421 1 1588999999999996421 11111211100 11111110 389999999
Q ss_pred cCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cccccC
Q 013008 242 IQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAG 319 (451)
Q Consensus 242 l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~ 319 (451)
+++ ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|... .....++ +|++++ +|.+++
T Consensus 166 l~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~~--~di~~~s~sK~~~~ 235 (420)
T 1t3i_A 166 LSE-KTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQLID--CDWLVASGHKMCAP 235 (420)
T ss_dssp CCT-TEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHHT--CSEEEEEGGGTTSC
T ss_pred hCC-CceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc--CchhhcC--CCEEEEehhhhcCC
Confidence 975 6889999998888888776 9999999999999999999996 33321 1222333 677755 596653
Q ss_pred CcccccccccHHHHhhccCCCcc--------------------CCCCCcHHHHHHHHH-HHHHhcC---hHHHHH-----
Q 013008 320 GLPIGAALVTEKVASAINYGDHG--------------------STFAGSPLVCNAAIA-VLDKISN---PAFLAS----- 370 (451)
Q Consensus 320 G~~iG~v~~~~~i~~~~~~~~~~--------------------~t~~~~~~~~aaa~a-al~~~~~---~~~~~~----- 370 (451)
.++|++++++++++.+...... .+.+.+++.++++++ +++.+.+ +.+.++
T Consensus 236 -~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~ 314 (420)
T 1t3i_A 236 -TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELT 314 (420)
T ss_dssp -TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred -CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3389999999999887654321 123456666666554 6666532 222222
Q ss_pred -----HHhCCCCcceecc------cceeEEEEec-CChHHHHHHHHHCCceeeec-----------CCCCEEEEeCCCCC
Q 013008 371 -----KLARNPHVKDVRG------LGLIIGIEFD-VSATPVVDACRDSGLLVLTA-----------GKGNVVRLVPPLII 427 (451)
Q Consensus 371 -----~~~~~~~~~~v~g------~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~-----------~~~~~iri~~~~~~ 427 (451)
.+++++.+..+.. .|.++.+.+. .+..++.+.|.++||.+.++ +..+.+|++++..+
T Consensus 315 ~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~ 394 (420)
T 1t3i_A 315 HYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYN 394 (420)
T ss_dssp HHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTC
T ss_pred HHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCC
Confidence 3344554433322 3778888774 35678889999999999886 21368999999889
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 013008 428 SEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 428 t~e~i~~~l~~l~~~l~~~~~ 448 (451)
+++++++++++|++++++++.
T Consensus 395 ~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 395 TKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999987653
No 110
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.95 E-value=7.3e-28 Score=243.08 Aligned_cols=334 Identities=13% Similarity=0.068 Sum_probs=219.8
Q ss_pred EEeeccCcccccCCCCCHHHHHHH--HHHHhhcccccCCCCC-HHHHHHHHHHhhccC--CCeEEecCCHHHHH--HHHH
Q 013008 100 YLDLSSGIAVNALGHGDADWIKAV--VDQANVLTHVSNMYYS-IPQIELAKRLVACSF--ADRVFFSNTGTEAN--EAAI 172 (451)
Q Consensus 100 ~iD~~~~~~~~~lG~~~p~v~~a~--~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~--~~al 172 (451)
.|||..|.....+...++.+.+++ .+++.........|.. ....+|.+.++++++ .++|++|+|+++|+ +.++
T Consensus 35 ~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~ 114 (427)
T 3ppl_A 35 KLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVIS 114 (427)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHH
T ss_pred eEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHH
Confidence 478877665433322233455555 4444332211122222 235677777877776 67999999999999 5788
Q ss_pred HHHHHHhh-hcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----CCHHHHHHhcCCCCe
Q 013008 173 KFARKFQR-HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQPGKT 247 (451)
Q Consensus 173 ~~a~~~~~-~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~ 247 (451)
+++...+. ...+....++++|++.+|+|+++.......+.. +..+|. -|+++|+++++..++
T Consensus 115 ~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~g~d~~~l~~~l~~~~~ 181 (427)
T 3ppl_A 115 WSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFE-------------MISVPMNEDGPDMDAVEELVKNPQV 181 (427)
T ss_dssp HHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCE-------------EEEEEEETTEECHHHHHHHTTSTTE
T ss_pred HHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCE-------------EEEeCCCCCCCCHHHHHHHHhcCCC
Confidence 86653100 000000001789999999999876544333221 112221 189999999965578
Q ss_pred EEEEEccccCCCCccccCHHHHHHHHHHH-HHhCCEEEEeccccCCCccccc----ccc------cccCCCcceeeeccc
Q 013008 248 AAVFVEPIQGEGGIYSATKEFLQFLRDAC-DDAGALLVFDEVQCGLGRTGYL----WAH------EHYGIFPDIMTLAKP 316 (451)
Q Consensus 248 aavi~ep~~~~~G~~~~~~~~l~~l~~l~-~~~g~llI~DEv~tg~gr~G~~----~~~------~~~~~~pdi~t~sK~ 316 (451)
++|+++|..+|+++.+++.+.+++|+++| ++||+++|+||+|+++.+.+.. ... +..+..+++.+|||.
T Consensus 182 ~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 261 (427)
T 3ppl_A 182 KGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI 261 (427)
T ss_dssp EEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT
T ss_pred eEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc
Confidence 89999985544434567888899999999 9999999999999985333321 111 133455667799999
Q ss_pred ccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc-ChHHHHH---------------HHhCCC---C
Q 013008 317 LAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLAS---------------KLARNP---H 377 (451)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~---------------~~~~~~---~ 377 (451)
+++|+|+||+++++++++.+.......+++.+++.+.++.++++... -..++++ +.+.++ .
T Consensus 262 ~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~ 341 (427)
T 3ppl_A 262 TLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGV 341 (427)
T ss_dssp SCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred cCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 76799999999999999888655555678889999988887775310 0111111 222222 1
Q ss_pred cce-ecccceeEEEEec-CChHHHHHHHHHCCceeeecC---------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 378 VKD-VRGLGLIIGIEFD-VSATPVVDACRDSGLLVLTAG---------KGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 378 ~~~-v~g~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~---------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
+.. ....|+++++.+. .+..++.+.|.++||.+.|++ ..+.+|++++.. ++++|++++++|.++++++
T Consensus 342 ~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 342 AQWTVPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp CEECCCSBSSCEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred eEEeCCCccEEEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence 221 2335788888884 357788899999999998832 136899987654 9999999999999999876
Q ss_pred h
Q 013008 447 D 447 (451)
Q Consensus 447 ~ 447 (451)
.
T Consensus 421 ~ 421 (427)
T 3ppl_A 421 A 421 (427)
T ss_dssp H
T ss_pred H
Confidence 4
No 111
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.95 E-value=6.8e-27 Score=234.84 Aligned_cols=323 Identities=11% Similarity=0.057 Sum_probs=213.1
Q ss_pred CCEEEeeccCcccccCCC--CCHHHHHHHHHHHhhc--ccccCCCCCHHHHHHHHHHhhccCCC---eEEecCCHHHHHH
Q 013008 97 GREYLDLSSGIAVNALGH--GDADWIKAVVDQANVL--THVSNMYYSIPQIELAKRLVACSFAD---RVFFSNTGTEANE 169 (451)
Q Consensus 97 G~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~e---~v~~~~sG~eA~~ 169 (451)
|+.+|||..|.+...-|+ .+|.+.+++.+..... .+....+..+.+.++++++....+.+ ++++|+||++|+.
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~ 115 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIR 115 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHH
Confidence 567889988876333333 5678888877643321 12122223344677777776665556 9999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC-CCCeeEeeCCCHHHHHHhcCC----
Q 013008 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MPGVNFVEYGNIEATRKLIQP---- 244 (451)
Q Consensus 170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~---- 244 (451)
.+++.+. .++|.|++.+|+|+++.......+.... . .+. ..+. ..|+++|++.+++
T Consensus 116 ~~~~~~~-----------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~-~---~~~~~~~~----~~d~~~l~~~l~~~~~~ 176 (413)
T 3t18_A 116 SAIFSYL-----------DEGDPLICHDYYWAPYRKICEEFGRNFK-T---FEFFTDDF----AFNIDVYKEAIDEGIRD 176 (413)
T ss_dssp HHHHHHC-----------CSSCEEEEESSCCTHHHHHHHHHTCEEE-E---ECCBCTTS----SBCHHHHHHHHHHHHHH
T ss_pred HHHHHhc-----------CCCCEEEECCCCcccHHHHHHHhCCeEE-E---eeccCCCC----CcCHHHHHHHHHHHhhc
Confidence 9999654 2689999999999887655433322211 1 111 0110 1278999998863
Q ss_pred CCeEEEEEccc-cCCCCccccCHHHHHHHHHHHH------HhCCEEEEeccccCCCccccc---ccccccCCCcce---e
Q 013008 245 GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACD------DAGALLVFDEVQCGLGRTGYL---WAHEHYGIFPDI---M 311 (451)
Q Consensus 245 ~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~------~~g~llI~DEv~tg~gr~G~~---~~~~~~~~~pdi---~ 311 (451)
+..++++++++ ++++|. +++.+.+++|+++|+ +||++||+||+|.+|++.|.. +.....++.+++ +
T Consensus 177 ~~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (413)
T 3t18_A 177 SDRIASLINSPGNNPTGY-SLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVV 255 (413)
T ss_dssp CSEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEE
T ss_pred CCCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEE
Confidence 34546766644 666665 568888999999999 899999999999999877752 222233455552 2
Q ss_pred --eeccccc-CCcccccccc---cHHHHhhccCCCc----cCCCCCcHHHHHHHHHHHHHhc------C-hHHHHH----
Q 013008 312 --TLAKPLA-GGLPIGAALV---TEKVASAINYGDH----GSTFAGSPLVCNAAIAVLDKIS------N-PAFLAS---- 370 (451)
Q Consensus 312 --t~sK~lg-~G~~iG~v~~---~~~i~~~~~~~~~----~~t~~~~~~~~aaa~aal~~~~------~-~~~~~~---- 370 (451)
+|||.++ .|+|+||+++ ++++++.+..... ....+.++++++++.++|+... . +.+.+.
T Consensus 256 ~~S~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 335 (413)
T 3t18_A 256 AFSMSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSR 335 (413)
T ss_dssp EEEHHHHTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCccCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 7999999 6999999998 8999988754321 1223468888888877664211 0 011111
Q ss_pred ------HHhCCCCcceeccc-ceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 371 ------KLARNPHVKDVRGL-GLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 371 ------~~~~~~~~~~v~g~-G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
.++.+ .+....+. |+++++++ .+..++++.|.++||++.|++ +.+|++++. .+++++ +++|.+++
T Consensus 336 ~~~l~~~l~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gv~v~~g~--~~iRis~~~-~~~~~~---l~~l~~~l 407 (413)
T 3t18_A 336 ADVFVTAAKEN-KLTMIPYFGGFFTFIPT-DKAFDIVKDLEKENIFTIPSA--KGIRVAICG-VGEEKI---PKLVQRLA 407 (413)
T ss_dssp HHHHHHHHHHT-TCCCBCCCSSSCEEEEC-SCHHHHHHHHHHTTEECEECS--SEEEECTTT-SCGGGH---HHHHHHHH
T ss_pred HHHHHHHHHHc-CCCccCCCceEEEEeCC-CCHHHHHHHHHhCCEEEecCC--CceEEEEee-CCHHHH---HHHHHHHH
Confidence 12222 22223334 45566655 357789999999999999973 689998774 355555 88888888
Q ss_pred HHHh
Q 013008 444 PVLD 447 (451)
Q Consensus 444 ~~~~ 447 (451)
++++
T Consensus 408 ~~~~ 411 (413)
T 3t18_A 408 FYTN 411 (413)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 112
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.95 E-value=7.2e-27 Score=233.78 Aligned_cols=316 Identities=14% Similarity=0.071 Sum_probs=207.2
Q ss_pred CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc--cCCC-CCHHHHHHHHHHhhc--cC---CCeEEecCCHHHHH
Q 013008 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV--SNMY-YSIPQIELAKRLVAC--SF---ADRVFFSNTGTEAN 168 (451)
Q Consensus 97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~-~~~~~~~l~~~l~~~--~~---~e~v~~~~sG~eA~ 168 (451)
|+++|||.++.+ .++ .+|.+.+++.+++++.... ...+ ......+|.+.++++ .+ .++|++++|+++|+
T Consensus 32 ~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGDT--TQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCCC--CCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCCC--CCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 678999988865 343 6899999999998764221 1112 222356788888887 34 67999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCH----HHHHHhcCC
Q 013008 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNI----EATRKLIQP 244 (451)
Q Consensus 169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~le~~l~~ 244 (451)
..+++++. ++++|++.+|+|+++...... .+.. .+..+|.++- .++++.
T Consensus 109 ~~~~~~~~------------~gd~Vl~~~p~y~~~~~~~~~-~g~~-----------~~~~~~~~~~~~~~~~l~~~--- 161 (400)
T 3asa_A 109 FRLLSFFG------------PNQTVAIQDPSYPAYLDIARL-TGAK-----------EIIALPCLQENAFFPEFPED--- 161 (400)
T ss_dssp HHHHHHHC------------SSCEEEEEESCCHHHHHHHHH-TTCS-----------EEEEEECCGGGTTCCCCCTT---
T ss_pred HHHHHHcC------------CCCEEEECCCCcHHHHHHHHH-cCCc-----------ceEecccchhcCcccChhhc---
Confidence 98765432 588999999999997644322 2211 0122222110 011111
Q ss_pred CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-cccccccC----CCcceeeeccccc-
Q 013008 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY-LWAHEHYG----IFPDIMTLAKPLA- 318 (451)
Q Consensus 245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~~~~~~~----~~pdi~t~sK~lg- 318 (451)
.++++|++++.++++|. +++.+++++|+++|++||+++|+||+|++|++.|. ......++ ....+.++||.+|
T Consensus 162 ~~~~~v~l~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 240 (400)
T 3asa_A 162 THIDILCLCSPNNPTGT-VLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGF 240 (400)
T ss_dssp CCCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTT
T ss_pred cCccEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCC
Confidence 35667777666666665 57899999999999999999999999998866553 12222222 2234668999998
Q ss_pred CCcccccccccHHH-------HhhccCCCccCCC-CCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcce
Q 013008 319 GGLPIGAALVTEKV-------ASAINYGDHGSTF-AGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKD 380 (451)
Q Consensus 319 ~G~~iG~v~~~~~i-------~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~ 380 (451)
+|+|+||+++++++ ++.+.......++ +.|+++++++.++|+...-++..++ .+++. .+..
T Consensus 241 ~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 319 (400)
T 3asa_A 241 AGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-GFEV 319 (400)
T ss_dssp TTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred cchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-CCee
Confidence 79999999999887 4444222223344 5789999999999886422222222 22223 2333
Q ss_pred ecc-cceeEEEE-ec--CChHHHHHHHHH-CCceeeecCC-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 381 VRG-LGLIIGIE-FD--VSATPVVDACRD-SGLLVLTAGK-----GNVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 381 v~g-~G~~~~~~-~~--~~~~~~~~~l~~-~Gv~~~~~~~-----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
..+ .|.++++. +. .+..++.+.|++ +||++.|+.. .+.+|++ +..+++++++++++|++++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 320 FGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQMAPALQ 393 (400)
T ss_dssp EECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHHC-----
T ss_pred eCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHHHHHHhh
Confidence 333 47788888 63 245568888875 4999987631 3679997 5679999999999999988754
No 113
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.95 E-value=1e-27 Score=239.08 Aligned_cols=314 Identities=13% Similarity=0.066 Sum_probs=207.1
Q ss_pred CCEEEeeccCcccccCC--CCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-----CCCeEEe--cCCHHHH
Q 013008 97 GREYLDLSSGIAVNALG--HGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-----FADRVFF--SNTGTEA 167 (451)
Q Consensus 97 G~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~e~v~~--~~sG~eA 167 (451)
|.++|||.+|.+..+.| +.+|.|.+++.+++++... ..+.......++.+.+++++ ..++|++ ++||++|
T Consensus 25 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a 103 (394)
T 2ay1_A 25 RQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETT-KTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGA 103 (394)
T ss_dssp CTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCC-CCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHH
T ss_pred CccccccccceeeCCCCCccCcHHHHHHHHHhcCCccc-CCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhH
Confidence 56689999998755555 5789999999998765211 11111122345555555543 3578999 9999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-------CCHHHHHH
Q 013008 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-------GNIEATRK 240 (451)
Q Consensus 168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~ 240 (451)
++.++++++.+. ++++|++.+|+||++.......+.. +..++. .|+++|++
T Consensus 104 ~~~~~~~~~~~~---------~gd~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l~~ 161 (394)
T 2ay1_A 104 LRQALELARMAN---------PDLRVFVSDPTWPNHVSIMNFMGLP-------------VQTYRYFDAETRGVDFEGMKA 161 (394)
T ss_dssp HHHHHHHHHHHC---------TTCCEEEEESCCHHHHHHHHHHTCC-------------EEEEECEETTTTEECHHHHHH
T ss_pred HHHHHHHHHhcC---------CCCEEEEcCCCChhHHHHHHHcCCc-------------eEEEecccccCCccCHHHHHH
Confidence 999999877543 4789999999999987654433321 111222 17999999
Q ss_pred hcCCC--CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc--cccccccc-CCCcc---eee
Q 013008 241 LIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG--YLWAHEHY-GIFPD---IMT 312 (451)
Q Consensus 241 ~l~~~--~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~~~~~~~-~~~pd---i~t 312 (451)
.+++. ..++++++..++++|. .++.+++++|+++|++||+++|+||+|++|++.| .......+ ...++ +.+
T Consensus 162 ~l~~~~~~~~~~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 240 (394)
T 2ay1_A 162 DLAAAKKGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAAS 240 (394)
T ss_dssp HHHTCCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred HHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEe
Confidence 98642 3566666666666665 6789999999999999999999999999987654 22122211 11233 447
Q ss_pred eccccc-CCcccccccc---cHHHHhhccCC---CccCCCC-CcHHHHHHHHHHHHHhc-C---hHHHHH----------
Q 013008 313 LAKPLA-GGLPIGAALV---TEKVASAINYG---DHGSTFA-GSPLVCNAAIAVLDKIS-N---PAFLAS---------- 370 (451)
Q Consensus 313 ~sK~lg-~G~~iG~v~~---~~~i~~~~~~~---~~~~t~~-~~~~~~aaa~aal~~~~-~---~~~~~~---------- 370 (451)
+||.++ +|+|+||+++ ++++++.+... .+..+++ .|+++++++.++|+... . +++.++
T Consensus 241 ~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 320 (394)
T 2ay1_A 241 CSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLRE 320 (394)
T ss_dssp CTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999 7999999987 66654433211 1123443 48899999888886430 0 011111
Q ss_pred -H---HhCCC---Ccceecc-cceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008 371 -K---LARNP---HVKDVRG-LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 442 (451)
Q Consensus 371 -~---~~~~~---~~~~v~g-~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~ 442 (451)
+ ++.++ .+....+ .|+++++.+ ....+.+.|.++||++.++ +|++++ .++++++++++++|+++
T Consensus 321 ~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~gi~v~~~-----~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 321 QLAGELRDLSGSDRFGFVAEHRGMFSRLGA--TPEQVKRIKEEFGIYMVGD-----SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHHHHHHHHHTSSTTTHHHHCCSSEEECCC--CHHHHHHHHHHHCEECCTT-----CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeeEEcCCceEEEeeCC--CHHHHHHHHHhCCEEecCC-----CeEEee-cCCHhhHHHHHHHHHHc
Confidence 1 11111 1222233 367766654 3455666677899999864 599877 47999999999999875
No 114
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.95 E-value=1.6e-26 Score=232.23 Aligned_cols=282 Identities=14% Similarity=0.078 Sum_probs=188.8
Q ss_pred HHHHHHHHhhccC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc-----eEEEE-cCCccCChhhhhhcc
Q 013008 142 QIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT-----EFVSF-TNSFHGRTMGALALT 211 (451)
Q Consensus 142 ~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~-----~ii~~-~~~yhg~~~~~~~~~ 211 (451)
+.++++++.+.++ .++|++|+||++|+..+++++.. +++ +||+. +|+||++........
T Consensus 81 r~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~-----------~gd~~~~~~vi~~~~p~~~~~~~~~~~~~ 149 (417)
T 3g7q_A 81 LNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAG-----------RRADGSTKKVLFPLAPEYIGYADSGLEDD 149 (417)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSB-----------C----CCBEEEESSCCCHHHHHC-----C
T ss_pred HHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcC-----------CCccCCcceEEEeCCCccccchhhccchh
Confidence 4444444443322 68999999999999999997752 333 78886 999998865432211
Q ss_pred CCCCcCCCCcCCCCCeeEeeCC------CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEE
Q 013008 212 SKEHYRSPFEPVMPGVNFVEYG------NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (451)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (451)
. +....+.+..++.+ |+++|+ +.+ ++++|+++..++++|. +++.+.+++|+++|++||+++|+
T Consensus 150 ~-------~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~-~~~~v~~~~p~NptG~-~~~~~~~~~l~~~a~~~~~~li~ 218 (417)
T 3g7q_A 150 L-------FVSARPNIELLPEGQFKYHVDFEHLH--IGE-ETGMICVSRPTNPTGN-VITDEELMKLDRLANQHNIPLVI 218 (417)
T ss_dssp C-------EEECCCEEEEEGGGEEEEECCGGGCC--CCT-TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEE
T ss_pred h-------hccccCcccccCCcccccccCHHHhc--ccc-CceEEEECCCCCCCCC-ccCHHHHHHHHHHHHHcCCEEEE
Confidence 0 01111222222221 677776 443 5677776665666665 56888899999999999999999
Q ss_pred eccccCCCcccccc---cccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHh
Q 013008 286 DEVQCGLGRTGYLW---AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKI 362 (451)
Q Consensus 286 DEv~tg~gr~G~~~---~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~ 362 (451)
||+|..+ ..+..+ .....+....+.++||...+|+|+||+++++++++.+....+..+++.++++++++.++++..
T Consensus 219 De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 297 (417)
T 3g7q_A 219 DNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRN 297 (417)
T ss_dssp ECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGGTCTTSCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTT
T ss_pred eCCCccc-cccccccccccCCCCCEEEEEechhccCCCcceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCc
Confidence 9999643 222111 011123344467899964568999999999999998876556677888999999998888642
Q ss_pred cChH-----H----HHH-------HHhCCCC--cce-ecccceeEEEEec---CChHHHHHHHHHCCceeeecCC-----
Q 013008 363 SNPA-----F----LAS-------KLARNPH--VKD-VRGLGLIIGIEFD---VSATPVVDACRDSGLLVLTAGK----- 415 (451)
Q Consensus 363 ~~~~-----~----~~~-------~~~~~~~--~~~-v~g~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~~~----- 415 (451)
.-.. . .++ +.+.++. +.. .+..|+++|+.+. .+..++.+.|.++||.+.|+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~ 377 (417)
T 3g7q_A 298 DLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGL 377 (417)
T ss_dssp CHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTB
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCC
Confidence 2111 1 111 2233442 222 2445888888884 3678899999999999987531
Q ss_pred -------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 416 -------GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 416 -------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
.+.+||+++. ++++|++++++|.++++++..
T Consensus 378 ~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 378 DKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp SSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHHh
Confidence 2589998774 999999999999999988754
No 115
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.95 E-value=5e-26 Score=225.79 Aligned_cols=309 Identities=12% Similarity=0.074 Sum_probs=216.9
Q ss_pred CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC---CeEEecCCHHHHHHHHHHH
Q 013008 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIKF 174 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---e~v~~~~sG~eA~~~al~~ 174 (451)
+.|+|..+ .++.+|++.+|+.+++.. + +.....+...+++++++++++. +.+++++||++|+..++++
T Consensus 20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~-~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~ 90 (386)
T 2dr1_A 20 KYKLFTAG------PVACFPEVLEIMKVQMFS--H-RSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN 90 (386)
T ss_dssp CSEECCSS------SCCCCHHHHHHTTSCCCC--T-TSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred cceeecCC------CcCCcHHHHHHHhccccc--c-cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence 45777643 345789999988776532 1 1111134478899999998873 4699999999999999997
Q ss_pred HHHHhhhcCCCCCCCCceEEEEcCCccC--ChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcC-CCC
Q 013008 175 ARKFQRHSNPDSKEPATEFVSFTNSFHG--RTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQ-PGK 246 (451)
Q Consensus 175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~-~~~ 246 (451)
+. .++++|++.+++||+ +...+ ...+.. +..++. .|+++|+++++ ..+
T Consensus 91 l~-----------~~gd~vl~~~~~~~~~~~~~~~-~~~g~~------------~~~v~~~~~~~~d~~~l~~~l~~~~~ 146 (386)
T 2dr1_A 91 GV-----------SKGGKVLVTIIGAFGKRYKEVV-ESNGRK------------AVVLEYEPGKAVKPEDLDDALRKNPD 146 (386)
T ss_dssp HS-----------CTTCEEEEEESSHHHHHHHHHH-HHTTCE------------EEEEECCTTCCCCHHHHHHHHHHCTT
T ss_pred hh-----------cCCCeEEEEcCCchhHHHHHHH-HHhCCc------------eEEEecCCCCCCCHHHHHHHHhcCCC
Confidence 64 158899999999998 33222 222211 122221 48999999995 246
Q ss_pred eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cccccCCcccc
Q 013008 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIG 324 (451)
Q Consensus 247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~G~~iG 324 (451)
+++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.+ ... ..... ..+|++++ +|+++++.++|
T Consensus 147 ~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~-~~~--~~~~~--~~~di~~~s~sK~~~~~~g~G 217 (386)
T 2dr1_A 147 VEAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMG-GAD--IKFDK--WGLDVVFSSSQKAFGVPPGLA 217 (386)
T ss_dssp CCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBT-TBC--CCTTT--TTCSEEEEETTSTTCCCSSCE
T ss_pred CcEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEcccccc-Ccc--ccccc--cCCcEEEEeccccccCCCceE
Confidence 788888888888888766 999999999999999999999733 221 12222 24677755 49998755689
Q ss_pred cccccHHHHhhccCC------------------CccCCCCCcHHHHHHHHHHHHHhcCh----HHHHH----------HH
Q 013008 325 AALVTEKVASAINYG------------------DHGSTFAGSPLVCNAAIAVLDKISNP----AFLAS----------KL 372 (451)
Q Consensus 325 ~v~~~~~i~~~~~~~------------------~~~~t~~~~~~~~aaa~aal~~~~~~----~~~~~----------~~ 372 (451)
++++++++++.+.+. ....+++.++++++++.++|+.+.+. +..++ .+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L 297 (386)
T 2dr1_A 218 IGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGV 297 (386)
T ss_dssp EEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999988876421 12345667889999999999875432 22222 22
Q ss_pred hCCCCcceecc----cceeEEEEec--CChHHHHHHHHHCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 373 ARNPHVKDVRG----LGLIIGIEFD--VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 373 ~~~~~~~~v~g----~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
+.+. +....+ .+.++++.+. .+..++.+.|.++||.+.++. ..+.+|++++..++++++++++++|++++
T Consensus 298 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 376 (386)
T 2dr1_A 298 REIG-LDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVI 376 (386)
T ss_dssp HHTT-CCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred HHcC-CeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 2222 222222 4678888774 357789999999999998863 13689999998899999999999999999
Q ss_pred HHHhhc
Q 013008 444 PVLDSN 449 (451)
Q Consensus 444 ~~~~~~ 449 (451)
++++..
T Consensus 377 ~~~~~~ 382 (386)
T 2dr1_A 377 NELKKQ 382 (386)
T ss_dssp HHHHHH
T ss_pred HHcCCC
Confidence 887543
No 116
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.94 E-value=5.6e-26 Score=228.60 Aligned_cols=316 Identities=16% Similarity=0.148 Sum_probs=216.7
Q ss_pred cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHh--hcccccCC-------CCCHHHHHHHHHHhhccC--CCeEEecCC
Q 013008 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQAN--VLTHVSNM-------YYSIPQIELAKRLVACSF--ADRVFFSNT 163 (451)
Q Consensus 95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~--~~~~~~~~-------~~~~~~~~l~~~l~~~~~--~e~v~~~~s 163 (451)
.++.-|+|+.++ |+.+|++.+++.+++. +....+.. ...+...+++++++++++ .++|++++|
T Consensus 20 ~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g 93 (423)
T 3lvm_A 20 MKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSG 93 (423)
T ss_dssp CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESS
T ss_pred cCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCC
Confidence 356678887654 4689999999999887 32111111 112235789999999987 459999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc--cCCCCcCCCCcCCCCCeeEeeCC-----CHH
Q 013008 164 GTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYG-----NIE 236 (451)
Q Consensus 164 G~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----d~~ 236 (451)
|++|++.+++++..+.. .+++.|++.+++|++.......+ .+. .+..++.+ |++
T Consensus 94 gt~a~~~a~~~l~~~~~-------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~ 154 (423)
T 3lvm_A 94 ATESDNLAIKGAANFYQ-------KKGKHIITSKTEHKAVLDTCRQLEREGF------------EVTYLAPQRNGIIDLK 154 (423)
T ss_dssp HHHHHHHHHHHHHHHHT-------TTCCEEEEETTSCHHHHHHHHHHHHTTC------------EEEEECCCTTSCCCHH
T ss_pred hHHHHHHHHHHHHHhhc-------cCCCEEEECCccchHHHHHHHHHHHcCC------------EEEEeccCCCCccCHH
Confidence 99999999997764332 14889999999999875444322 111 12222222 899
Q ss_pred HHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--
Q 013008 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA-- 314 (451)
Q Consensus 237 ~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s-- 314 (451)
+|++++++ ++++|+++++++++|.+.+ +++|+++|++||++||+||+|+. +.. ........+|++++|
T Consensus 155 ~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~----~~~~~~~~~di~~~s~s 224 (423)
T 3lvm_A 155 ELEAAMRD-DTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL----PIDLSQLKVDLMSFSGH 224 (423)
T ss_dssp HHHHHCCT-TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS----CCCTTTSCCSEEEEEST
T ss_pred HHHHhcCC-CcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC----CcChhhcCCCEEEechH
Confidence 99999975 6889999999888888776 99999999999999999999863 222 122223457877655
Q ss_pred ccccCCcccccccccHHHHhhccCCCc-------cCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----------HHhCC
Q 013008 315 KPLAGGLPIGAALVTEKVASAINYGDH-------GSTFAGSPLVCNAAIAVLDKISN--PAFLAS----------KLARN 375 (451)
Q Consensus 315 K~lg~G~~iG~v~~~~~i~~~~~~~~~-------~~t~~~~~~~~aaa~aal~~~~~--~~~~~~----------~~~~~ 375 (451)
|.++ +.++|++++++++++.+.+... ..+.+.++..++++.++++.+.. +++.++ .++++
T Consensus 225 K~~g-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 303 (423)
T 3lvm_A 225 KIYG-PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDI 303 (423)
T ss_dssp TTTS-CSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcC-CCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9654 3458999999887777654322 22344577778777788776543 222222 23455
Q ss_pred CCcceeccc----ceeEEEEec-CChHHHHHHHHHCCceeeecCC----------------------CCEEEEeCCCCCC
Q 013008 376 PHVKDVRGL----GLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIIS 428 (451)
Q Consensus 376 ~~~~~v~g~----G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~----------------------~~~iri~~~~~~t 428 (451)
|.+..+... +.++.+.+. .+..++.+.|.+ +.+.++.. .+.+|++++..++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t 381 (423)
T 3lvm_A 304 EEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT 381 (423)
T ss_dssp TTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCC
T ss_pred CCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCC
Confidence 544333222 345666663 456777777766 66665421 2679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 013008 429 EQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 429 ~e~i~~~l~~l~~~l~~~~~ 448 (451)
+|++++++++|++++++++.
T Consensus 382 ~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 382 EEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999988764
No 117
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.94 E-value=7.2e-27 Score=230.76 Aligned_cols=309 Identities=13% Similarity=0.114 Sum_probs=214.7
Q ss_pred CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-------cccCCCCCHHHHHHHHH-HhhccCCCeEEecCCHHHHHH
Q 013008 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-------HVSNMYYSIPQIELAKR-LVACSFADRVFFSNTGTEANE 169 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~-l~~~~~~e~v~~~~sG~eA~~ 169 (451)
-.|+|+.. +.++.+|++.+++.+++.... +....+......+++++ ++++++.+.+++++||++|++
T Consensus 9 ~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~ 83 (371)
T 2e7j_A 9 FINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKF 83 (371)
T ss_dssp CEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHH
T ss_pred cEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHH
Confidence 45666633 245689999999999886542 11112233447889999 999998669999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEee--CC-----CHHHHHHhc
Q 013008 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVE--YG-----NIEATRKLI 242 (451)
Q Consensus 170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----d~~~le~~l 242 (451)
.+++++. .++++|++.+++||+..... ...+. .+..++ .+ |+++|++++
T Consensus 84 ~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~-~~~g~------------~~~~v~~~~~~~~~~d~~~l~~~l 139 (371)
T 2e7j_A 84 AVMHSLA-----------KKDAWVVMDENCHYSSYVAA-ERAGL------------NIALVPKTDYPDYAITPENFAQTI 139 (371)
T ss_dssp HHHHHHC-----------CTTCEEEEETTCCHHHHHHH-HHTTC------------EEEEECCCCTTTCCCCHHHHHHHH
T ss_pred HHHHHHh-----------CCCCEEEEccCcchHHHHHH-HHcCC------------eEEEeecccCCCCCcCHHHHHHHH
Confidence 9999774 15889999999999887553 22221 122233 22 899999998
Q ss_pred CC----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eeccc
Q 013008 243 QP----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKP 316 (451)
Q Consensus 243 ~~----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~ 316 (451)
+. +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+.+ ..+ .....++ +|++ +++|+
T Consensus 140 ~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~--~~~~~~~--~di~~~s~sK~ 210 (371)
T 2e7j_A 140 EETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP--VSLKEIG--ADFIVGSGHKS 210 (371)
T ss_dssp HHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC--CCHHHHT--CSEEEEEHHHH
T ss_pred HhhcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC--CChhhcC--CCEEEecCCcC
Confidence 62 46888999999888888776 799999999999999999999753 322 1223334 5555 67999
Q ss_pred ccCCcccccccccHHHHhh-ccCCCc--cC-----CCCCcHHHHHHHHHHHHHhcC---hHH--HHH------HHhCCCC
Q 013008 317 LAGGLPIGAALVTEKVASA-INYGDH--GS-----TFAGSPLVCNAAIAVLDKISN---PAF--LAS------KLARNPH 377 (451)
Q Consensus 317 lg~G~~iG~v~~~~~i~~~-~~~~~~--~~-----t~~~~~~~~aaa~aal~~~~~---~~~--~~~------~~~~~~~ 377 (451)
+++|.++|++++++++++. +..... .. +++.++..++++.++++.+.. ... .+. .++.+ .
T Consensus 211 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~ 289 (371)
T 2e7j_A 211 MAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKL-G 289 (371)
T ss_dssp SSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHT-T
T ss_pred CCCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 9987899999999998887 755433 22 455677878777777776532 112 111 22222 2
Q ss_pred cceecc---cceeEEEEecCChHHHHHHHHHCCceeeec-------C-CCCEEE-EeCCCC-CCHHHHHHHHHHHHHHHH
Q 013008 378 VKDVRG---LGLIIGIEFDVSATPVVDACRDSGLLVLTA-------G-KGNVVR-LVPPLI-ISEQELDQAVEILCKTLP 444 (451)
Q Consensus 378 ~~~v~g---~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-------~-~~~~ir-i~~~~~-~t~e~i~~~l~~l~~~l~ 444 (451)
+..+.. .|.++++.+. +..++.+.|.++||.+.|. + ..+.+| ++++.. ++++++++++++|+++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~ 368 (371)
T 2e7j_A 290 IKQLGDNPHNHDLMFFHAE-VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE 368 (371)
T ss_dssp CEEESSSSCCSSEEEEECH-HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred cEEecCCCccCceEEEECC-CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence 222222 4778888875 5667888888899998761 1 136789 988877 899999999999999987
Q ss_pred HH
Q 013008 445 VL 446 (451)
Q Consensus 445 ~~ 446 (451)
++
T Consensus 369 ~~ 370 (371)
T 2e7j_A 369 KY 370 (371)
T ss_dssp HC
T ss_pred hc
Confidence 54
No 118
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.94 E-value=2.3e-25 Score=220.75 Aligned_cols=318 Identities=14% Similarity=0.128 Sum_probs=213.2
Q ss_pred EEEeeccCcccccCCCCCHHHHHHHHHHHhhcc-cccCCC-----CCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHH
Q 013008 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLT-HVSNMY-----YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEA 170 (451)
Q Consensus 99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~-----~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~ 170 (451)
.|+|+.++ |+.+|+|.+++.+++++.. ...... ......+++++++++++ .+++++++||++|+..
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 57776653 4789999999999987521 111101 12336789999999987 4699999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhh--hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008 171 AIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (451)
Q Consensus 171 al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (451)
+++++..+.. .++++|++.+++||+...... ...+..... .+..++. ..|+++|++++++ +++
T Consensus 77 ~~~~~~~~~~-------~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~~~l~~~i~~-~~~ 141 (384)
T 1eg5_A 77 ILKTVAETFE-------KRKRTIITTPIEHKAVLETMKYLSMKGFKVKY---VPVDSRG----VVKLEELEKLVDE-DTF 141 (384)
T ss_dssp HHHHHHHHTT-------TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEE---CCBCTTS----CBCHHHHHHHCCT-TEE
T ss_pred HHHhhhhhcc-------CCCCEEEECCCCchHHHHHHHHHHhcCCEEEE---EccCCCC----ccCHHHHHHHhCC-CCe
Confidence 9998763210 157899999999998754432 222221111 1111111 1289999999975 688
Q ss_pred EEEEccccCCCCccccCHHHHHHHHHHHHHhC--CEEEEeccccCCCcccccccccccCCCcceeeec--ccccC-Cccc
Q 013008 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAG--ALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAG-GLPI 323 (451)
Q Consensus 249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g--~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~-G~~i 323 (451)
+|+++++++++|.+.+ +++|.++|++|| ++||+||+|+ +|... .... ...+|++++| |.++. | +
T Consensus 142 ~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~--~~~~--~~~~di~~~s~sK~~g~~G--~ 210 (384)
T 1eg5_A 142 LVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--FSLE--KLEVDYASFSAHKFHGPKG--V 210 (384)
T ss_dssp EEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--CCCT--TTCCSEEEEEGGGGTSCTT--C
T ss_pred EEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc--cCch--hcCCCEEEecHHHhcCCCc--e
Confidence 8888888888887776 899999999999 9999999996 64321 1222 2347877655 98763 4 7
Q ss_pred ccccccHHH--HhhccCCC---ccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----------HHhCCCCcceecc---
Q 013008 324 GAALVTEKV--ASAINYGD---HGSTFAGSPLVCNAAIAVLDKISN--PAFLAS----------KLARNPHVKDVRG--- 383 (451)
Q Consensus 324 G~v~~~~~i--~~~~~~~~---~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~----------~~~~~~~~~~v~g--- 383 (451)
|++++++++ ...+.... ...+++.++++++++.++|+.+.+ ++..++ .+++ +.+..+..
T Consensus 211 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~ 289 (384)
T 1eg5_A 211 GITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEI 289 (384)
T ss_dssp EEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTS
T ss_pred EEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCccc
Confidence 999998876 33332211 124567789999988888886422 122221 2222 22222211
Q ss_pred -cceeEEEEec-CChHHHHHHHHHCCceeeecCC----------------------CCEEEEeCCCCCCHHHHHHHHHHH
Q 013008 384 -LGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQAVEIL 439 (451)
Q Consensus 384 -~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~----------------------~~~iri~~~~~~t~e~i~~~l~~l 439 (451)
.+.++++.+. .+..++.+.|.++||.+.++.. .+.+|++++..+++|++++++++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l 369 (384)
T 1eg5_A 290 SLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKI 369 (384)
T ss_dssp BCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 2456666663 4577899999999999987421 157999988889999999999999
Q ss_pred HHHHHHHhhc
Q 013008 440 CKTLPVLDSN 449 (451)
Q Consensus 440 ~~~l~~~~~~ 449 (451)
++++++++..
T Consensus 370 ~~~~~~~~~~ 379 (384)
T 1eg5_A 370 EEILSFLDLT 379 (384)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhh
Confidence 9999887654
No 119
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.94 E-value=5.3e-26 Score=230.47 Aligned_cols=284 Identities=13% Similarity=0.097 Sum_probs=192.8
Q ss_pred HHHHHHHHhhcc----CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc--------------eEEEE-cCCccC
Q 013008 142 QIELAKRLVACS----FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT--------------EFVSF-TNSFHG 202 (451)
Q Consensus 142 ~~~l~~~l~~~~----~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~--------------~ii~~-~~~yhg 202 (451)
+.++++++.+.+ ..++|++|+||++|+..+++++.. +++ +||+. +|+|++
T Consensus 89 r~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~-----------~gd~~~~~~~~~~g~~~~vi~~~~p~~~~ 157 (444)
T 3if2_A 89 IDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGG-----------AFVNEHSQDKESKSVDKSILLPLTPEYIG 157 (444)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSE-----------EEECC-------CEEEEEEEESSSSCCGG
T ss_pred HHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhC-----------CCccccccccccccccceEEEeCCCCccc
Confidence 445555554433 368999999999999999997641 344 57665 899998
Q ss_pred ChhhhhhccCCCCcCCCCcCCCCCeeEeeC----------CCHHHHHHh---cCCCCeEEEEEccccCCCCccccCHHHH
Q 013008 203 RTMGALALTSKEHYRSPFEPVMPGVNFVEY----------GNIEATRKL---IQPGKTAAVFVEPIQGEGGIYSATKEFL 269 (451)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~d~~~le~~---l~~~~~aavi~ep~~~~~G~~~~~~~~l 269 (451)
+........ .+......+..++. -|+++|+++ +.+ ++++|+++..++++|. +++.+.+
T Consensus 158 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~nptG~-~~~~~~l 228 (444)
T 3if2_A 158 YSDVHVEGQ-------HFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG-RIGAICCSRPTNPTGN-VLTDEEM 228 (444)
T ss_dssp GTTCCSSSC-------CEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCTTTCC-CCCHHHH
T ss_pred hhhcccccc-------hhhccCceEEecccccccCccccCCCHHHHHHHHHhcCC-CceEEEeCCCCCCCCC-cCCHHHH
Confidence 764321100 00111122222331 289999988 443 5666666555556665 5688899
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCcccccc---cccccCCCcceeeecccccCCcccccccccHHHHhhccCCCccCCCC
Q 013008 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLW---AHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDHGSTFA 346 (451)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~---~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~~~t~~ 346 (451)
++|+++|++||++||+||+|..+ ..+..+ .....+..+++.++||.+.+|+|+||+++++++++.+....+..+++
T Consensus 229 ~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~ 307 (444)
T 3if2_A 229 AHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVVNLA 307 (444)
T ss_dssp HHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhccCC
Confidence 99999999999999999999643 122111 11123445667799998556899999999999999887655556778
Q ss_pred CcHHHHHHHHHHHHHhcCh---------HHHHH-------HHhCCCC--cce-ecccceeEEEEec---CChHHHHHHHH
Q 013008 347 GSPLVCNAAIAVLDKISNP---------AFLAS-------KLARNPH--VKD-VRGLGLIIGIEFD---VSATPVVDACR 404 (451)
Q Consensus 347 ~~~~~~aaa~aal~~~~~~---------~~~~~-------~~~~~~~--~~~-v~g~G~~~~~~~~---~~~~~~~~~l~ 404 (451)
.++++++++.++++...-. .+.++ +.+.++. +.. .+..|+++++.+. .+..++.+.|.
T Consensus 308 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~ 387 (444)
T 3if2_A 308 PTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERLK 387 (444)
T ss_dssp CCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHHH
Confidence 8899999988888742111 01111 2233442 222 2355888888884 35788999999
Q ss_pred HCCceeeecCC---C----------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 405 DSGLLVLTAGK---G----------NVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 405 ~~Gv~~~~~~~---~----------~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
++||.+.|+.. + +.+||+++. ++++|++++++|.++++++.+
T Consensus 388 ~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 388 AKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp HTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHHc
Confidence 99999987631 1 479998876 999999999999999988764
No 120
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.94 E-value=1e-24 Score=218.92 Aligned_cols=320 Identities=18% Similarity=0.106 Sum_probs=219.8
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhc-ccccC--C---CCCHHHHHHHHHHhhccC--CCeEEecCCHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVL-THVSN--M---YYSIPQIELAKRLVACSF--ADRVFFSNTGTEA 167 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~--~---~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA 167 (451)
+|..|+|+.+ .|+.+|.|.+++.+++++. ..... . .......+++++++++++ .++|++++||++|
T Consensus 27 ~~~~yld~~~------~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCC------cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 5788999754 3578899999999998753 11110 0 112446789999999988 4689999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh-ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCC
Q 013008 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK 246 (451)
Q Consensus 168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 246 (451)
++.+++.++.+.... .+++++|+.++.+|+....... +.... .....+..++. +++|++++.+ +
T Consensus 101 l~~al~~~~~~~~~~-----~~gd~vii~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~v~~--~~~l~~~i~~-~ 165 (416)
T 1qz9_A 101 LFKVLSAALRVQATR-----SPERRVIVTETSNFPTDLYIAEGLADML-------QQGYTLRLVDS--PEELPQAIDQ-D 165 (416)
T ss_dssp HHHHHHHHHHHHHHH-----STTCCEEEEETTSCHHHHHHHHHHHHHH-------CSSCEEEEESS--GGGHHHHCST-T
T ss_pred HHHHHHhhccccccc-----CCCCcEEEEcCCCCCchHHHHHHHHHHh-------cCCceEEEeCc--HHHHHHHhCC-C
Confidence 999999775331000 0467788888888886544322 11000 00112344554 7888888864 6
Q ss_pred eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cccccCCccc-
Q 013008 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPI- 323 (451)
Q Consensus 247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~G~~i- 323 (451)
+++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|... .....+ .+|++++ +|.+++|.++
T Consensus 166 ~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~~K~l~~g~~~~ 236 (416)
T 1qz9_A 166 TAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQA--GADYAIGCTYKYLNGGPGSQ 236 (416)
T ss_dssp EEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSEEEECSSSTTCCCTTCC
T ss_pred ceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChhhc--CCCEEEecCcccCCCCCCCe
Confidence 889999999888888776 8999999999999999999996 54332 122223 3677765 5999878888
Q ss_pred ccccccHHHHhhccCCCcc----------------------C-CCCCcHHHHHHHHHHHHHhcCh---HHHHH-------
Q 013008 324 GAALVTEKVASAINYGDHG----------------------S-TFAGSPLVCNAAIAVLDKISNP---AFLAS------- 370 (451)
Q Consensus 324 G~v~~~~~i~~~~~~~~~~----------------------~-t~~~~~~~~aaa~aal~~~~~~---~~~~~------- 370 (451)
|++++++++++.+.+...+ . ..+.++.+++++.++++.+..+ ++.++
T Consensus 237 g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 316 (416)
T 1qz9_A 237 AFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDL 316 (416)
T ss_dssp CEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999987776542111 1 2245788888888889877532 22222
Q ss_pred ---HHhCC-C--Ccceecc-----cceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCC-CCCCHHHHHHHHHH
Q 013008 371 ---KLARN-P--HVKDVRG-----LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPP-LIISEQELDQAVEI 438 (451)
Q Consensus 371 ---~~~~~-~--~~~~v~g-----~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~-~~~t~e~i~~~l~~ 438 (451)
.++.. | .+..+.. .+.++++.+. ...++.+.|.++||.+...+. +.+|++++ +.++++++++++++
T Consensus 317 l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~gi~~~~~~~-~~lRis~~~~~~t~~~i~~~~~~ 394 (416)
T 1qz9_A 317 FIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-EGYAVIQALIDRGVIGDYREP-RIMRFGFTPLYTTFTEVWDAVQI 394 (416)
T ss_dssp HHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT-THHHHHHHHHTTTEECEEETT-TEEEEECCTTTCCHHHHHHHHHH
T ss_pred HHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC-CHHHHHHHHHhCCcEeccCCC-CeEEEeCcccCCCHHHHHHHHHH
Confidence 12221 2 2222222 3567777774 367899999999999876544 78999987 68899999999999
Q ss_pred HHHHHHHHh
Q 013008 439 LCKTLPVLD 447 (451)
Q Consensus 439 l~~~l~~~~ 447 (451)
|++++++..
T Consensus 395 l~~~~~~~~ 403 (416)
T 1qz9_A 395 LGEILDRKT 403 (416)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhccc
Confidence 999987643
No 121
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.94 E-value=1.3e-25 Score=223.01 Aligned_cols=320 Identities=16% Similarity=0.102 Sum_probs=210.6
Q ss_pred EEEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-CCeEEecCCHHHHHH
Q 013008 91 KLYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-ADRVFFSNTGTEANE 169 (451)
Q Consensus 91 ~l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~e~v~~~~sG~eA~~ 169 (451)
.++|.+++.+.++...++...++|..++..+. ..++++++++.++ .+.++|++||++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-------------------~~~~~~~l~~~~~~~~~v~~~~sgt~a~~ 65 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEV-------------------MNDLLSNLKTVYNAEAAVIIPGSGTYGME 65 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHH-------------------HHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHH-------------------HHHHHHHHHHHhCCCCEEEEcCChhHHHH
Confidence 46788999999888776666677877765533 2344556666666 357889999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc-cCCCCcCCCCcCCCC----Ce-eEeeCCCHHHHHHhcC
Q 013008 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL-TSKEHYRSPFEPVMP----GV-NFVEYGNIEATRKLIQ 243 (451)
Q Consensus 170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~----~~-~~~~~~d~~~le~~l~ 243 (451)
.+++.+. ++++||+++++||+.....+.. .+... ...+.+... +. ......|+++++++++
T Consensus 66 ~~~~~~~------------~gd~vi~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~ 132 (379)
T 3ke3_A 66 AVARQLT------------IDEDCLIIRNGWFSYRWTQILEKGKFAK-SSTVLTAERTEDTEAPKPFAPVDIETAVAKIK 132 (379)
T ss_dssp HHHHHHC------------TTCEEEEEECSHHHHHHHHHHHHHCCSS-EEEEEECEESSCCSSCCCEECCCHHHHHHHHH
T ss_pred HHHHhCC------------CCCeEEEEeCCchhHHHHHHHHHhCCCC-ceEEEeccccccccccCCCCCCCHHHHHHHHh
Confidence 9886432 5899999999999875433321 11100 000000000 00 0012358999999996
Q ss_pred CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCccc
Q 013008 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPI 323 (451)
Q Consensus 244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~i 323 (451)
..++++|++..+.++.|. +.+.+++++|+++|++||+++|+||+++ | +..+..+.+++.+.+.+++|+++++.++
T Consensus 133 ~~~~~~v~~~~~~~~~G~-~~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~d~~~~s~~K~l~~~~g~ 207 (379)
T 3ke3_A 133 EDKSAIVYAPHVETSSGI-ILSEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGIDVLISAPQKGWSSTPCA 207 (379)
T ss_dssp HHTCSEEEEESEETTTTE-ECCHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTCSEEEECTTTTTCSCCCE
T ss_pred hcCCcEEEEEeecCCCce-eCCHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCCCEEEecchhhcCCCCce
Confidence 335667777777777775 5678899999999999999999999986 3 3344555667655566677999876778
Q ss_pred ccccccHHHHhhccCCC----------------------ccCCCCCcHHHHHHHHHHHHHhcCh---HHHHH--------
Q 013008 324 GAALVTEKVASAINYGD----------------------HGSTFAGSPLVCNAAIAVLDKISNP---AFLAS-------- 370 (451)
Q Consensus 324 G~v~~~~~i~~~~~~~~----------------------~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~-------- 370 (451)
|++++++++++.+.+.. +..+++.|+..++++.++|+.+.++ +..++
T Consensus 208 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l 287 (379)
T 3ke3_A 208 GLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRV 287 (379)
T ss_dssp EEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 99999999888765311 0122366788888888999877543 22222
Q ss_pred --HHhCCC--Ccceec-ccceeEEEEecCChHHHHHHHHHCCceeeecCC--------CCEEEEeCCCCCCHHHHHHHHH
Q 013008 371 --KLARNP--HVKDVR-GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK--------GNVVRLVPPLIISEQELDQAVE 437 (451)
Q Consensus 371 --~~~~~~--~~~~v~-g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--------~~~iri~~~~~~t~e~i~~~l~ 437 (451)
.++.+. ...... ..+.+..+.++.....+.+.|.++||.+.++.. ++.+|++++..+|++||+++++
T Consensus 288 ~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~ 367 (379)
T 3ke3_A 288 RKVLTDKGIESVAAEGFEAPGVVVSYTERDDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVE 367 (379)
T ss_dssp HHHHHHTTCCBSBCTTCBCSSEEEEECSCHHHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHH
T ss_pred HHHHHHcCCEecCCccccCceEEEEccCCcchHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHH
Confidence 122222 111100 112233333332222236778899999887631 4789999999999999999999
Q ss_pred HHHHHHHHHh
Q 013008 438 ILCKTLPVLD 447 (451)
Q Consensus 438 ~l~~~l~~~~ 447 (451)
+|+++++++.
T Consensus 368 ~l~~~l~~~~ 377 (379)
T 3ke3_A 368 RFEKALDEVL 377 (379)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998875
No 122
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.94 E-value=6.7e-26 Score=225.81 Aligned_cols=310 Identities=16% Similarity=0.059 Sum_probs=210.7
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CC-eEEecCCHHHHHHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAAI 172 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e-~v~~~~sG~eA~~~al 172 (451)
+++.|+|..+ -++.+|++.+|+.+++.. + +.....+...++++++++.++ .+ ++++++||++|+..++
T Consensus 32 ~~~~~l~~~~------~~~~~~~v~~a~~~~~~~--~-~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~ 102 (393)
T 1vjo_A 32 VPSRLLLGPG------PSNAHPSVLQAMNVSPVG--H-LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATI 102 (393)
T ss_dssp CCCCEECSSS------CCCCCHHHHHHHSSCCCC--T-TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHH
T ss_pred CccceeccCC------CCCCCHHHHHHHhccccc--c-cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHH
Confidence 3456777543 246789999998876543 1 111112347788999999887 45 8999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCccC--ChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHG--RTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (451)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav 250 (451)
+++. .++++|++.+|+||+ +..... ..+..... .+...+. ..|+++|++.+++.++++|
T Consensus 103 ~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~-~~g~~~~~---v~~~~~~----~~d~~~l~~~l~~~~~~~v 163 (393)
T 1vjo_A 103 ANAV-----------EPGDVVLIGVAGYFGNRLVDMAG-RYGADVRT---ISKPWGE----VFSLEELRTALETHRPAIL 163 (393)
T ss_dssp HHHC-----------CTTCEEEEEESSHHHHHHHHHHH-HTTCEEEE---EECCTTC----CCCHHHHHHHHHHHCCSEE
T ss_pred Hhcc-----------CCCCEEEEEcCChhHHHHHHHHH-HcCCceEE---EecCCCC----CCCHHHHHHHHhhCCceEE
Confidence 9774 158899999999998 432221 11211100 1111110 1489999999864256788
Q ss_pred EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccc
Q 013008 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALV 328 (451)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~ 328 (451)
+++++++++|.+.+ +++|+++|++||+++|+||+|+ +|... .......+|+++.| |+++++.++|++++
T Consensus 164 ~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~----~~~~~~~~di~~~s~sK~l~~~~~~G~l~~ 234 (393)
T 1vjo_A 164 ALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP----IFLDAWGVDLAYSCSQKGLGCSPGASPFTM 234 (393)
T ss_dssp EEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC----CCTTTTTCSEEECCSSSTTCSCSSCEEEEE
T ss_pred EEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC----CcccccCccEEEEcCcccccCCCceEEEEE
Confidence 88888888887766 8999999999999999999997 65432 11223457887654 99987559999999
Q ss_pred cHHHHhhccCC-------Cc------------cCCC-CCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCC
Q 013008 329 TEKVASAINYG-------DH------------GSTF-AGSPLVCNAAIAVLDKISNP---AFLAS----------KLARN 375 (451)
Q Consensus 329 ~~~i~~~~~~~-------~~------------~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~ 375 (451)
++++++.+... .. ..++ +.|+++++++.++|+.+.+. +..++ .++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 314 (393)
T 1vjo_A 235 SSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI 314 (393)
T ss_dssp CHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988876321 10 2234 67889999999999875322 22222 22222
Q ss_pred CCcceeccc----ceeEEEEec--CChHHHHHHHHHC-CceeeecCC---CCEEEEeC-CCCCCHHHHHHHHHHHHHHH
Q 013008 376 PHVKDVRGL----GLIIGIEFD--VSATPVVDACRDS-GLLVLTAGK---GNVVRLVP-PLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 376 ~~~~~v~g~----G~~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~~---~~~iri~~-~~~~t~e~i~~~l~~l~~~l 443 (451)
. +..+.+. +.++++.+. .+..++.+.|.++ ||.+.++.. .+.+|+++ ++..++|++++++++|++++
T Consensus 315 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 315 G-LSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp T-CCBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred C-CcccCCccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 2 2222222 345666663 3577899999988 999988642 37899994 56778889999999999876
No 123
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.94 E-value=8.6e-25 Score=213.06 Aligned_cols=299 Identities=14% Similarity=0.068 Sum_probs=209.5
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIK 173 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~ 173 (451)
+.+++|||.++.. ++| .+|.+.+++.++++... .++.....+|.++++++++ .+++++++|+++++..+++
T Consensus 14 ~~~~~i~l~~n~~--~~~-~~~~v~~a~~~~~~~~~----~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 14 AAAQAVCLAFNEN--PEA-VEPRVQAAIAAAAARIN----RYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCCCCEECSSCCC--CSC-CCHHHHHHHHHHGGGTT----SCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCCceEeeCCCC--CCC-CCHHHHHHHHHhhhhhc----cCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHH
Confidence 4567999998854 576 78999999999876532 2345567899999999987 5699999999999999988
Q ss_pred HHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeE
Q 013008 174 FARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTA 248 (451)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~a 248 (451)
++ ++++|++.+|+|+++....... +. .+..++. .|+++|+++. +++
T Consensus 87 ~~-------------~gd~vl~~~p~~~~~~~~~~~~-g~------------~~~~v~~~~~~~~d~~~l~~~~---~~~ 137 (337)
T 3p1t_A 87 EF-------------SSMRFVTAWPGFDGYRARIAVS-GL------------RHFEIGLTDDLLLDPNDLAQVS---RDD 137 (337)
T ss_dssp HS-------------TTSEEEEESSSCSHHHHHHTTS-CC------------EEEEECBCTTSSBCHHHHTTCC---TTE
T ss_pred hc-------------CCCeEEEeCCCcHHHHHHHHHc-CC------------EEEEecCCCCCCCCHHHHHhhc---CCC
Confidence 64 1789999999999876443222 11 1122221 1788888763 345
Q ss_pred EEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCccccccc
Q 013008 249 AVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAAL 327 (451)
Q Consensus 249 avi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~ 327 (451)
+++++.+++++|.+.+ ++++.++|+++++ +|+||+|.+|+..+... ....+....+.++||.++ +|+++||++
T Consensus 138 ~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~-~~~~~~~i~~~S~sK~~g~~G~r~G~~~ 211 (337)
T 3p1t_A 138 CVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRARG-LAYGENELVFRSFSKSYGLAGLRLGALF 211 (337)
T ss_dssp EEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSSC-CCCBTTEEEEEESSSTTCCTTTCCEEEE
T ss_pred EEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhccccccc-cccCCCEEEEeeCchhccCcchheEEEE
Confidence 6666666667777666 7778888999997 55699998876544321 112222334558999998 799999999
Q ss_pred ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC-hHHHHH----------HHhCCCCcceecccceeEEEEecCCh
Q 013008 328 VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN-PAFLAS----------KLARNPHVKDVRGLGLIIGIEFDVSA 396 (451)
Q Consensus 328 ~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~----------~~~~~~~~~~v~g~G~~~~~~~~~~~ 396 (451)
+++++++.+... ..+++.++++++++.++|+.... +...++ .++++ .+....+.|.++++... ..
T Consensus 212 ~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~-~~ 287 (337)
T 3p1t_A 212 GPSELIAAMKRK--QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GYRVASSEANFVLVENA-AG 287 (337)
T ss_dssp CCHHHHHHHHTT--SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSEEEEECT-TT
T ss_pred eCHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCEECCCCCeEEEEEcC-CH
Confidence 999999888643 34567788888888887763110 111111 22233 23335567778877663 35
Q ss_pred HHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 397 TPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 397 ~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
..+.+.|.++||.+.++.. ++.+|+++. +++++++++++|++++
T Consensus 288 ~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 288 ERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEYS 334 (337)
T ss_dssp HHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHHh
Confidence 6788888899999998642 478999755 7999999999988765
No 124
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.93 E-value=2.8e-25 Score=226.59 Aligned_cols=328 Identities=13% Similarity=0.118 Sum_probs=206.2
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA 175 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a 175 (451)
.|+.||||.++.++ |.|.+++.+++..... .+.......+|+++++++++.++++||+||++|++.+++++
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~--~y~~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~ 111 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDE--AYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVL 111 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCC--CSSSCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhccc--ccccCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHH
Confidence 47889999887653 6788888877654322 22345567899999999999999999999999999999998
Q ss_pred HHHhhhcCCCCCCCCce---EEEEcCCcc-CChhhhhhccCCCCcCCCCc-CCCCCeeEeeC---CCHHHHHHhcCC---
Q 013008 176 RKFQRHSNPDSKEPATE---FVSFTNSFH-GRTMGALALTSKEHYRSPFE-PVMPGVNFVEY---GNIEATRKLIQP--- 244 (451)
Q Consensus 176 ~~~~~~~~~~~~~~~~~---ii~~~~~yh-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~d~~~le~~l~~--- 244 (451)
+.+... +++. ||+. .+| +.+...+...+......... ....+ ...++ .|+++|++++++
T Consensus 112 ~~~~~~-------~Gd~~~~viv~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~i~~~~~ 181 (467)
T 1ax4_A 112 LKYKQK-------EGKAKNPVFIS--NFHFDTTAAHVELNGCKAINIVTEKAFDSE-TYDDWKGDFDIKKLKENIAQHGA 181 (467)
T ss_dssp HHHHHH-------TTCCSSCEEEE--SSCCHHHHHHHHHTTCEEEECBCGGGGCTT-SCCTTTTCBCHHHHHHHHHHHCG
T ss_pred HHhhcc-------CCCccceEEEe--ccccchhhHHHhccCCceeccccccccccc-ccCCcccccCHHHHHHHHHhcCC
Confidence 754210 2555 7776 444 44444444433221110000 00000 00112 289999999973
Q ss_pred CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC---C-------CcccccccccccC----CCcce
Q 013008 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG---L-------GRTGYLWAHEHYG----IFPDI 310 (451)
Q Consensus 245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg---~-------gr~G~~~~~~~~~----~~pdi 310 (451)
.++++|+++++++++|+.+++.+++++|+++|++||++||+||++.. + +..|.. ....+ ..+|+
T Consensus 182 ~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~ 259 (467)
T 1ax4_A 182 DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNAT--IKEVIFDMYKYADA 259 (467)
T ss_dssp GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCC--HHHHHHHHGGGCSE
T ss_pred CCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCc--hhhhhhhhccccce
Confidence 36899999999888855788999999999999999999999998642 0 222211 00000 12566
Q ss_pred e--eecccccCCcccc-ccccc-H-HHHhhccCC----CccCCCCCcHHHHHH-HHHHHHHhcChHHHHH----------
Q 013008 311 M--TLAKPLAGGLPIG-AALVT-E-KVASAINYG----DHGSTFAGSPLVCNA-AIAVLDKISNPAFLAS---------- 370 (451)
Q Consensus 311 ~--t~sK~lg~G~~iG-~v~~~-~-~i~~~~~~~----~~~~t~~~~~~~~aa-a~aal~~~~~~~~~~~---------- 370 (451)
+ +++|++ |+|+| +++++ + ++++.+... ....++++++..+.+ +.++++.+.+++.+++
T Consensus 260 ~~~s~sK~~--g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~ 337 (467)
T 1ax4_A 260 LTMSAKKDP--LLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGD 337 (467)
T ss_dssp EEEETTSTT--CCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred EEEeccccC--CCCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 5 456665 45655 55566 6 777765321 112344444443333 3335665443222222
Q ss_pred -HHh-CCCCcceecccceeEEEE-------ec---CChHHHHHHH-HHCCceeeec-----------C-----CCCEEEE
Q 013008 371 -KLA-RNPHVKDVRGLGLIIGIE-------FD---VSATPVVDAC-RDSGLLVLTA-----------G-----KGNVVRL 421 (451)
Q Consensus 371 -~~~-~~~~~~~v~g~G~~~~~~-------~~---~~~~~~~~~l-~~~Gv~~~~~-----------~-----~~~~iri 421 (451)
+.+ .++.+ ....|.++++. +. .+..++++.| .++||.+.+. + ..+.+||
T Consensus 338 ~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRl 415 (467)
T 1ax4_A 338 RLREAGIPIQ--YPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRL 415 (467)
T ss_dssp HHHHTTCCBC--SSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEE
T ss_pred HHHhCCCCcc--cCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEE
Confidence 222 12222 22346677777 31 1256788988 7899999872 1 0168999
Q ss_pred eCC-CCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 422 VPP-LIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 422 ~~~-~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
+++ ..+|++++++++++|++++++++.
T Consensus 416 s~~~~~~t~e~i~~~~~~l~~~~~~~~~ 443 (467)
T 1ax4_A 416 TIARRVYTNDHMDYIADALIGLKEKFAT 443 (467)
T ss_dssp ECCTTSSCHHHHHHHHHHHHTTHHHHTT
T ss_pred ecccccCCHHHHHHHHHHHHHHHHhhhc
Confidence 998 558999999999999999887653
No 125
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.93 E-value=2.6e-24 Score=222.34 Aligned_cols=316 Identities=15% Similarity=0.080 Sum_probs=204.1
Q ss_pred CCCHHHHHHHHHHHhhccccc--CCCCCH----HHHHHHHHHhhccCC----CeE--EecCCHHHHHHHHHHHHHHHhhh
Q 013008 114 HGDADWIKAVVDQANVLTHVS--NMYYSI----PQIELAKRLVACSFA----DRV--FFSNTGTEANEAAIKFARKFQRH 181 (451)
Q Consensus 114 ~~~p~v~~a~~~~~~~~~~~~--~~~~~~----~~~~l~~~l~~~~~~----e~v--~~~~sG~eA~~~al~~a~~~~~~ 181 (451)
+.++.+.+++.+++....... ...... ...+++++++++++. +++ ++++||++|+..++++++.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~ 186 (514)
T 3mad_A 107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARA 186 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhh
Confidence 356777777777775432211 111122 245677788888873 577 99999999999999999876432
Q ss_pred cCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCCCeEEEEEcccc
Q 013008 182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQ 256 (451)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~aavi~ep~~ 256 (451)
..+. ++++||+.+++|+++....... +. ++..++.+ |+++|++++++ ++++|++++++
T Consensus 187 ~~g~---~~d~Vi~~~~~~~~~~~~~~~~-G~------------~v~~v~~~~~~~~d~~~Le~~i~~-~~~~v~~~~~~ 249 (514)
T 3mad_A 187 TKGI---TAPEAVVPVSAHAAFDKAAQYF-GI------------KLVRTPLDADYRADVAAMREAITP-NTVVVAGSAPG 249 (514)
T ss_dssp HHCC---SSCEEEEETTSCTHHHHHHHHH-TC------------EEEEECBCTTSCBCHHHHHHHCCT-TEEEEEEETTC
T ss_pred hcCC---CCCeEEEeCccchHHHHHHHHc-CC------------eeEEeeeCCCCCCCHHHHHHHhcc-CCEEEEEeCCC
Confidence 1111 3589999999998765433222 21 13333333 89999999975 68888888888
Q ss_pred CCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC-----cccc---cccccccCCCcceeeecccccCCcccccccc
Q 013008 257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG-----RTGY---LWAHEHYGIFPDIMTLAKPLAGGLPIGAALV 328 (451)
Q Consensus 257 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g-----r~G~---~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~ 328 (451)
+++|.+.+ +++|+++|++||++||+||+|+++. +.|. .+.....++...+.+++|.+.+|.++|++++
T Consensus 250 nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~ 325 (514)
T 3mad_A 250 YPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILY 325 (514)
T ss_dssp TTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEE
T ss_pred CCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEE
Confidence 88888766 9999999999999999999998762 2333 2333344543334456699887889999988
Q ss_pred cHHHHhhccC----CC----------ccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceeccc
Q 013008 329 TEKVASAINY----GD----------HGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRGL 384 (451)
Q Consensus 329 ~~~i~~~~~~----~~----------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g~ 384 (451)
+++....... .. .+.....+.+++.+++..+....-++..++ .+++++.+..+...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 405 (514)
T 3mad_A 326 RRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP 405 (514)
T ss_dssp SSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC
T ss_pred eCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC
Confidence 7665443211 00 111111223444444443332111122222 33445544433333
Q ss_pred ceeEEEEec-CChHHHHHHHHHCCceeeecCCCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHhhcC
Q 013008 385 GLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPP-LIISEQELDQAVEILCKTLPVLDSNS 450 (451)
Q Consensus 385 G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~-~~~t~e~i~~~l~~l~~~l~~~~~~~ 450 (451)
..++++... .+..++.+.|.++||++.....++.+|++++ ...+++++++++++|+++++++++++
T Consensus 406 ~~~~~~~~~~~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~~ 473 (514)
T 3mad_A 406 LWVIAVASDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHP 473 (514)
T ss_dssp SSEEEEECSSSCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHCT
T ss_pred eEEEEEeCCCCCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 446666653 4578899999999998854443578999887 55567999999999999999887553
No 126
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.93 E-value=8.4e-25 Score=220.22 Aligned_cols=315 Identities=14% Similarity=0.064 Sum_probs=206.1
Q ss_pred CEEEeeccCcccccCCCCC--HHHHHHHHHHHhhcc-ccc--CCCCCHHHHHHHHHHhhccC----CC--eEEecCCHHH
Q 013008 98 REYLDLSSGIAVNALGHGD--ADWIKAVVDQANVLT-HVS--NMYYSIPQIELAKRLVACSF----AD--RVFFSNTGTE 166 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~-~~~--~~~~~~~~~~l~~~l~~~~~----~e--~v~~~~sG~e 166 (451)
..+|||..|.+..+-|+.+ |.|++|+.+++++.. +.+ ..+..+.+.++++++....+ .+ ++++|+||++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 4679999997666677765 899999999987622 211 11223346666666654433 56 8999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----C---CHHHHH
Q 013008 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----G---NIEATR 239 (451)
Q Consensus 167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---d~~~le 239 (451)
|+..+++++.... ++|+|++.+|+|+++.......+.. +..+|. + |+++|+
T Consensus 129 al~~~~~~~~~~~---------~gd~Vlv~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~~~l~ 186 (420)
T 4f4e_A 129 ALKIGADFLRTLN---------PKAKVAISDPSWENHRALFDMAGFE-------------VVAYPYYDAKTNGVNFDGML 186 (420)
T ss_dssp HHHHHHHHHHHHC---------TTCCEEEEESCCHHHHHHHHHTTCC-------------EEEEECEETTTTEECHHHHH
T ss_pred HHHHHHHHHHHhC---------CCCEEEEeCCCcHhHHHHHHHcCCe-------------EEEeeeeccccCccCHHHHH
Confidence 9999987554332 6899999999999876554333221 222222 2 899999
Q ss_pred HhcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--ccccc----ccCCCccee
Q 013008 240 KLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHE----HYGIFPDIM 311 (451)
Q Consensus 240 ~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~----~~~~~pdi~ 311 (451)
+.++. .+++++++++.++++|. .++.+.+++|+++|++||+++|+||+|.+|++.+. ..... ..+....+.
T Consensus 187 ~~l~~~~~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 265 (420)
T 4f4e_A 187 AALNGYEPGTIVVLHACCHNPTGV-DLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSS 265 (420)
T ss_dssp HHHTTCCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEE
Confidence 99972 45677777777777775 56899999999999999999999999999876541 11111 122223345
Q ss_pred eeccccc-CCcccccccc---cHHHHhhc----cCCCccCCCCCcHHHHHHHHHHHHHhc--C--hHHHH----H-----
Q 013008 312 TLAKPLA-GGLPIGAALV---TEKVASAI----NYGDHGSTFAGSPLVCNAAIAVLDKIS--N--PAFLA----S----- 370 (451)
Q Consensus 312 t~sK~lg-~G~~iG~v~~---~~~i~~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~--~--~~~~~----~----- 370 (451)
+|||.++ .|+|+||+++ ++++++.+ .......+.+.++++++++.++|+... . +++.+ +
T Consensus 266 S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 345 (420)
T 4f4e_A 266 SFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMR 345 (420)
T ss_dssp ECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999 5999999753 56655442 211123344457777777766665310 0 11111 1
Q ss_pred -----HHhCC---CCccee-cccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008 371 -----KLARN---PHVKDV-RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 441 (451)
Q Consensus 371 -----~~~~~---~~~~~v-~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~ 441 (451)
.++++ +.+... +..|++.++.+ ....+.+.|.++||++.|++ |+++. .++++++++++++|++
T Consensus 346 ~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~l~~~gI~v~~~~-----Ris~~-~~~~~~i~~~~~~l~~ 417 (420)
T 4f4e_A 346 NGLVERLKAAGIERDFSFINAQRGMFSYSGL--TSAQVDRLREEFGIYAVSTG-----RICVA-ALNTRNLDVVANAIAA 417 (420)
T ss_dssp HHHHHHHHHTTCSSCCTHHHHSCSSEEECCC--CHHHHHHHHHHHCEECCTTS-----EEEGG-GCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCceeECCCccEEEEeCC--CHHHHHHHHHhCCEEecCCC-----eEEEe-cCCHHHHHHHHHHHHH
Confidence 12222 122222 34466666554 34556666778899998753 88765 4478889999999998
Q ss_pred HH
Q 013008 442 TL 443 (451)
Q Consensus 442 ~l 443 (451)
++
T Consensus 418 ~l 419 (420)
T 4f4e_A 418 VL 419 (420)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 127
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.93 E-value=7e-24 Score=212.09 Aligned_cols=307 Identities=15% Similarity=0.058 Sum_probs=212.3
Q ss_pred CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc-cCCC-----CCHHHHHHHHHHhhccC--CCeEEecCCHHHHH
Q 013008 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV-SNMY-----YSIPQIELAKRLVACSF--ADRVFFSNTGTEAN 168 (451)
Q Consensus 97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~-----~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~ 168 (451)
+..|+|+.++. +.+|++.+++.++++..... ...+ ..+...+++++++++++ .+++++++||++|+
T Consensus 26 ~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHH
Confidence 57888877643 47899999999998764211 1111 12347789999999987 46899999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc---cCCCCcCCCCcCCCCCeeEeeCC------CHHHHH
Q 013008 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL---TSKEHYRSPFEPVMPGVNFVEYG------NIEATR 239 (451)
Q Consensus 169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------d~~~le 239 (451)
..+++++..... ++++||+.+++|++.......+ .|.. +..++.+ |+++|+
T Consensus 100 ~~~~~~l~~~~~--------~gd~vi~~~~~~~~~~~~~~~~~~~~g~~------------v~~v~~~~~~~~~d~~~l~ 159 (406)
T 3cai_A 100 SLLAEASSSRAG--------LGYEVIVSRLDDEANIAPWLRAAHRYGAK------------VKWAEVDIETGELPTWQWE 159 (406)
T ss_dssp HHHHHHTGGGGB--------TTCEEEEETTSCGGGTHHHHHHHHHHBCE------------EEEECCCTTTCCCCGGGHH
T ss_pred HHHHHHHhhccC--------CCCEEEEcCCccHHHHHHHHHHHHhcCCe------------EEEEecCcccCCcCHHHHH
Confidence 999886521111 5789999999998765433221 1211 1222222 789999
Q ss_pred HhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccc
Q 013008 240 KLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPL 317 (451)
Q Consensus 240 ~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~l 317 (451)
+.+++ ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ +|... +....++ +|++ +++|.+
T Consensus 160 ~~l~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~~--~d~~~~s~~K~~ 229 (406)
T 3cai_A 160 SLISK-STRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL--LDIRETD--ADVVTVNAHAWG 229 (406)
T ss_dssp HHCCT-TEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC--CCHHHHC--CSEEEEEGGGGT
T ss_pred HHhCC-CceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC--CCchhcC--CCEEEeehhhhc
Confidence 99964 6889999998888888776 8999999999999999999996 33221 2223334 5665 567977
Q ss_pred cCCcccc-cccccHHHHhhccCCCc---------cCCCCCcHHHHHHHHHHHHHhcC-----------------hHHHHH
Q 013008 318 AGGLPIG-AALVTEKVASAINYGDH---------GSTFAGSPLVCNAAIAVLDKISN-----------------PAFLAS 370 (451)
Q Consensus 318 g~G~~iG-~v~~~~~i~~~~~~~~~---------~~t~~~~~~~~aaa~aal~~~~~-----------------~~~~~~ 370 (451)
|++ +| ++++++++++.+.+... ....+.|+.+++++.++++.+.. ++..++
T Consensus 230 g~~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 307 (406)
T 3cai_A 230 GPP--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAY 307 (406)
T ss_dssp SCS--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHH
T ss_pred CCC--cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHH
Confidence 643 88 99999999888765421 01234577777777778877644 112211
Q ss_pred ----------HHhCCCCcceecc---cceeEEEEec-CChHHHHHHHHHCCceeeecC------------CCCEEEEeCC
Q 013008 371 ----------KLARNPHVKDVRG---LGLIIGIEFD-VSATPVVDACRDSGLLVLTAG------------KGNVVRLVPP 424 (451)
Q Consensus 371 ----------~~~~~~~~~~v~g---~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~------------~~~~iri~~~ 424 (451)
.++.++.+..... .+.++++.+. .+..++.+.|.++||.+.++. ..+.+|++++
T Consensus 308 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~ 387 (406)
T 3cai_A 308 LNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLA 387 (406)
T ss_dssp HHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECC
T ss_pred HHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEee
Confidence 2334554332222 2446777764 457789999999999998753 1267999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 013008 425 LIISEQELDQAVEILCK 441 (451)
Q Consensus 425 ~~~t~e~i~~~l~~l~~ 441 (451)
..+++|++++++++|++
T Consensus 388 ~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 388 HYSTMAEVDQLVRALAS 404 (406)
T ss_dssp TTCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 98999999999999875
No 128
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.93 E-value=3.3e-25 Score=219.61 Aligned_cols=296 Identities=14% Similarity=0.116 Sum_probs=204.6
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--C--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 013008 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--A--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~--e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~ 190 (451)
.+|++.+++.+++... ..........+++++++++++ . +++++++||++|+. +++.+. .++
T Consensus 13 ~~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~-----------~~g 77 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF---TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL-----------KPN 77 (384)
T ss_dssp CCHHHHHHTTCCSCCT---TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC-----------CTT
T ss_pred CCHHHHHHhhcccccc---ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc-----------CCC
Confidence 5788888887755321 111123347788999999887 3 67999999999999 887543 168
Q ss_pred ceEEEEcCCccCChhhhh-hccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccCCCCcccc
Q 013008 191 TEFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSA 264 (451)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~ 264 (451)
|+||+.+++||+...... ...+. .+..++. .|+++|+++++++++++|+++++++++|.+.+
T Consensus 78 d~vi~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~ 145 (384)
T 3zrp_A 78 DKILVVSNGVFGDRWEQIFKRYPV------------NVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP 145 (384)
T ss_dssp CEEEEECSSHHHHHHHHHHTTSSC------------EEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC
T ss_pred CEEEEecCCcchHHHHHHHHHcCC------------cEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc
Confidence 999999999998533222 11121 1222222 28999999997656889999998888888776
Q ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcccccccccHHHHhhc-cCCC-
Q 013008 265 TKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAI-NYGD- 340 (451)
Q Consensus 265 ~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~-~~~~- 340 (451)
+++|.++|++||+++|+||+|+ ++... ..... ..+|+++ ++|+++++.++|++++++++++.+ .+..
T Consensus 146 ----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~--~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~ 216 (384)
T 3zrp_A 146 ----VKDVINKIRKYVELIVVDGVSS-VGAEE--VKAEE--WNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSI 216 (384)
T ss_dssp ----HHHHHHHHGGGEEEEEEECTTT-TTTSC--CCTTT--TTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCS
T ss_pred ----HHHHHHHHHhcCCEEEEECccc-ccCcc--ccccc--cCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCC
Confidence 9999999999999999999996 32211 11222 2366665 559998777799999999987776 2110
Q ss_pred --------------------ccCCC-CCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCCcceecc---
Q 013008 341 --------------------HGSTF-AGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPHVKDVRG--- 383 (451)
Q Consensus 341 --------------------~~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~~~~v~g--- 383 (451)
....+ +.++..++++.++++.+... ...++ .++.+. +.....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~ 295 (384)
T 3zrp_A 217 AGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALG-LEIVARRPE 295 (384)
T ss_dssp CCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSCSSGG
T ss_pred CcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC-CeEccCccc
Confidence 12223 44666777777777765332 22222 222222 221222
Q ss_pred --cceeEEEEec-CChHHHHHHHHHCCceeeecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 384 --LGLIIGIEFD-VSATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 384 --~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
.+.++++.+. .+..++.+.|.++||.+.++.. .+.+|+++...++++++++++++|++++++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 296 SYSNTVTGVILKVADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp GBCSSEEEEECSSSCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCccEEEEECCCCCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 3667777774 4678899999999999987652 16799999988999999999999999998865
No 129
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.93 E-value=2e-25 Score=219.10 Aligned_cols=306 Identities=12% Similarity=0.092 Sum_probs=200.9
Q ss_pred EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHHHHH
Q 013008 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKFARK 177 (451)
Q Consensus 100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~a~~ 177 (451)
+++|.++. .|+.+|++.+++.+++..+. ...+..+...+++++++++++ .+++++++||++|++.++++++.
T Consensus 15 ~i~l~~~~----~~~~~~~v~~a~~~~~~~~~--~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~ 88 (359)
T 1svv_A 15 PYSFVNDY----SVGMHPKILDLMARDNMTQH--AGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR 88 (359)
T ss_dssp CEECSCSC----SSCCCHHHHHHHHHHTTCCC--CSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC
T ss_pred eEEecCCC----cCCCCHHHHHHHHHHHhhcc--ccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC
Confidence 66766532 45799999999999887532 233456678999999999887 56899999999999999998752
Q ss_pred HhhhcCCCCCCCCceEEEEcCCccCChhh-hhhccCCCCcCCCCcCCCCCeeEeeCC----CHHHHHHhcCCC------C
Q 013008 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMG-ALALTSKEHYRSPFEPVMPGVNFVEYG----NIEATRKLIQPG------K 246 (451)
Q Consensus 178 ~~~~~~~~~~~~~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~le~~l~~~------~ 246 (451)
++++|++.+|+||+.... .....+. .+..++.+ |+++|++.+++. +
T Consensus 89 -----------~gd~vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~ 145 (359)
T 1svv_A 89 -----------PWEAVIATQLGHISTHETGAIEATGH------------KVVTAPCPDGKLRVADIESALHENRSEHMVI 145 (359)
T ss_dssp -----------TTEEEEEETTSHHHHSSTTHHHHTTC------------CEEEECCTTSCCCHHHHHHHHHHSCSTTSCE
T ss_pred -----------CCCEEEEcccchHHHHHHHHHhcCCC------------eeEEEeCCCCeecHHHHHHHHHHHHhccCCC
Confidence 588999999999987543 1221121 22233332 689999998643 3
Q ss_pred eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC--CcccccccccccC--CCcceeee--cccccCC
Q 013008 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL--GRTGYLWAHEHYG--IFPDIMTL--AKPLAGG 320 (451)
Q Consensus 247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~--gr~G~~~~~~~~~--~~pdi~t~--sK~lg~G 320 (451)
+++|+++++ +++|. ..+.+++++|+++|++||+++|+||+|.+| |..+.. ....+ ..+|++++ +|. ++.
T Consensus 146 ~~~v~~~~~-~ptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~~K~-g~~ 220 (359)
T 1svv_A 146 PKLVYISNT-TEVGT-QYTKQELEDISASCKEHGLYLFLDGARLASALSSPVND--LTLADIARLTDMFYIGATKA-GGM 220 (359)
T ss_dssp EEEEEEESS-CTTSC-CCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC--CCHHHHHHHCSEEEEECTTT-TCS
T ss_pred ceEEEEEcC-CCCce-ecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc--hhhhhhhhcCCEEEEecccC-CCC
Confidence 788888877 45665 557899999999999999999999999655 443321 11111 24677655 564 323
Q ss_pred cccccccccHHHHhhccCCC--ccCCCCCcHHHHHHHHHHHHHhcChH---HHHH----------HHhCCCCccee-ccc
Q 013008 321 LPIGAALVTEKVASAINYGD--HGSTFAGSPLVCNAAIAVLDKISNPA---FLAS----------KLARNPHVKDV-RGL 384 (451)
Q Consensus 321 ~~iG~v~~~~~i~~~~~~~~--~~~t~~~~~~~~aaa~aal~~~~~~~---~~~~----------~~~~~~~~~~v-~g~ 384 (451)
.++|++++++++++.+.... ...+++.++...++..++ +++.. ..++ .++ .+.+..+ ...
T Consensus 221 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~ 296 (359)
T 1svv_A 221 FGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVL---MKDNLFFELGAHSNKMAAILKAGLE-ACGIRLAWPSA 296 (359)
T ss_dssp SCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHH---TSTTHHHHHHHHHHHHHHHHHHHHH-HTTCCBSSCCS
T ss_pred CceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHhc-cCCeEEccCCc
Confidence 56688888988877765321 233333232333332222 33322 1111 122 2333222 233
Q ss_pred ceeEEEEecCChHHHHHHHHHC-Cceeeec--CCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 385 GLIIGIEFDVSATPVVDACRDS-GLLVLTA--GKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 385 G~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~--~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
+.++++.+. .++.+.|+++ ||++.+. ...+.+|+++++.++++++++++++|+++++++
T Consensus 297 ~~~~~~~~~---~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 297 SNQLFPILE---NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp SSEECBEEE---HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred cceEEEEcC---HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 455555543 5788999999 9988542 123689999999999999999999999988654
No 130
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.93 E-value=5.3e-25 Score=215.95 Aligned_cols=313 Identities=15% Similarity=0.133 Sum_probs=200.2
Q ss_pred CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCC-eEEecCCHHHHHHHHHHHHH
Q 013008 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFAD-RVFFSNTGTEANEAAIKFAR 176 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e-~v~~~~sG~eA~~~al~~a~ 176 (451)
..+|||.++. .++.+|++++|+.+++.. +...+...+...+++++++++++.+ .+++++||++|++.++++++
T Consensus 7 ~~~id~~~~~----~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~ 80 (356)
T 1v72_A 7 PPALGFSSDN----IAGASPEVAQALVKHSSG--QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT 80 (356)
T ss_dssp CCCCBCSCGG----GCCCCHHHHHHHHHTTSS--CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC
T ss_pred CceEeeccCC----ccCCCHHHHHHHHhhccC--cccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhc
Confidence 4689998763 357899999999987632 1222234566889999999998855 48999999999999999765
Q ss_pred HHhhhcCCCCCCCCceEEEEcCCccCChhh-hhhcc--CCCCcCCCCcCCCCCeeEeeCCCHHHHHH-hcCCC------C
Q 013008 177 KFQRHSNPDSKEPATEFVSFTNSFHGRTMG-ALALT--SKEHYRSPFEPVMPGVNFVEYGNIEATRK-LIQPG------K 246 (451)
Q Consensus 177 ~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~------~ 246 (451)
.+++.|++.++.|...... .+... +..... .+.. +. .-|+++|++ ++++. +
T Consensus 81 -----------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~---v~~~-~~----~~d~~~l~~~~i~~~~~~~~~~ 141 (356)
T 1v72_A 81 -----------PPWGNIYCHPASHINNDECGAPEFFSNGAKLMT---VDGP-AA----KLDIVRLRERTREKVGDVHTTQ 141 (356)
T ss_dssp -----------CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEE---CCCG-GG----CCCHHHHHHHTTSSTTCTTSCE
T ss_pred -----------CCCCEEEEcCccchhhhhchHHHHHhCCcEEEE---ecCC-CC----eEcHHHHHHHhhhcchhhccCC
Confidence 1578888887765432211 12222 221111 0110 00 128999999 88742 5
Q ss_pred eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC--cccccccccccC--CCccee--eecccccCC
Q 013008 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG--RTGYLWAHEHYG--IFPDIM--TLAKPLAGG 320 (451)
Q Consensus 247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g--r~G~~~~~~~~~--~~pdi~--t~sK~lg~G 320 (451)
+++|++++.+ ++|. +++.+++++|+++|++||++||+||+|..+. ..|.. ....+ ...|++ +++|+ |
T Consensus 142 ~~~v~~~~~~-~tG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g 214 (356)
T 1v72_A 142 PACVSITQAT-EVGS-IYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---G 214 (356)
T ss_dssp EEEEEEESSC-TTSC-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---T
T ss_pred ceEEEEEcCC-CCCc-cCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---C
Confidence 7899999865 5664 6789999999999999999999999986431 11211 11111 134555 46787 3
Q ss_pred cccc--cccccHHHHhhccCC-CccCCCCCcHHHHHHHHHHHHHhcChHH---HHH----------HHhCCCCccee-cc
Q 013008 321 LPIG--AALVTEKVASAINYG-DHGSTFAGSPLVCNAAIAVLDKISNPAF---LAS----------KLARNPHVKDV-RG 383 (451)
Q Consensus 321 ~~iG--~v~~~~~i~~~~~~~-~~~~t~~~~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~~~~v-~g 383 (451)
.|+| ++++++++++.+... .+.++.... .+.++.++++.++++.+ .++ .++.++.+..+ +.
T Consensus 215 ~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 292 (356)
T 1v72_A 215 VLAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGT 292 (356)
T ss_dssp CSSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCC
T ss_pred CcCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCC
Confidence 4776 777888888766432 112222221 12233344555544322 111 23334444332 34
Q ss_pred cceeEEEEecCChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 384 LGLIIGIEFDVSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 384 ~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
.+.++++.+. .++++.|.++||.+.++.. .+.+|+++++.++++++++++++|++++++.+
T Consensus 293 ~~~~~~~~~~---~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~ 354 (356)
T 1v72_A 293 EANILFCRLD---SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRTQ 354 (356)
T ss_dssp CSSEEEEEEC---HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC----
T ss_pred CccEEEEEcC---HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhhc
Confidence 4666777663 4788999999999986532 37899999999999999999999999887653
No 131
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.93 E-value=1.9e-25 Score=231.57 Aligned_cols=322 Identities=11% Similarity=0.006 Sum_probs=203.7
Q ss_pred ccCCCCCHHHHHHHHHHHhhcccc-cCCCCCHHHHHHHHHHhhccC-------CCeEEecCCHHHHHHHHHHHHHH--Hh
Q 013008 110 NALGHGDADWIKAVVDQANVLTHV-SNMYYSIPQIELAKRLVACSF-------ADRVFFSNTGTEANEAAIKFARK--FQ 179 (451)
Q Consensus 110 ~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~-------~e~v~~~~sG~eA~~~al~~a~~--~~ 179 (451)
...++.+|++++++.+++....+. +..+....+.++++.+.+..+ .+++++|+||++|+..+++.+.. +.
T Consensus 111 g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~ 190 (533)
T 3f6t_A 111 TELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLL 190 (533)
T ss_dssp HTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcc
Confidence 344567889998888887653332 222334447777777765512 37999999999999999996422 11
Q ss_pred hhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcC-CCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCC
Q 013008 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEP-VMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGE 258 (451)
Q Consensus 180 ~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~ 258 (451)
.++|.|++.+|+|+++.............. +..+ ...+... |+++|++++.+ ++++|+++..+++
T Consensus 191 --------~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v-~~~~~~~~~~~~----d~~~l~~~l~~-~~k~v~l~~p~NP 256 (533)
T 3f6t_A 191 --------KKGDKIAINEPIFTPYLRIPELKDYELVEV-DLHSYEKNDWEI----EPNEIEKLKDP-SIKALIVVNPTNP 256 (533)
T ss_dssp --------CTTCEEEEESSCCHHHHTSGGGGGSEEEEE-CCCEETTTTSEE----CHHHHHHHSCT-TEEEEEEESSCTT
T ss_pred --------CCcCEEEEcCCCcHHHHHHHHHcCCeEEEE-EecCCcccCCCC----CHHHHHHHhCC-CCeEEEEeCCCCC
Confidence 158999999999998764433222111100 0000 0001111 78999999975 5666666554555
Q ss_pred CCccccCHHHHHHHHHHHH-HhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCcccccccccHH-----
Q 013008 259 GGIYSATKEFLQFLRDACD-DAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALVTEK----- 331 (451)
Q Consensus 259 ~G~~~~~~~~l~~l~~l~~-~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~~~----- 331 (451)
+|. +++.+.+++|+++|+ +||+++|+||+|.+|...+........+....+.+|||.+| .|+|+||++++++
T Consensus 257 tG~-~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~ 335 (533)
T 3f6t_A 257 TSK-EFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDD 335 (533)
T ss_dssp TCB-CCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHH
T ss_pred Ccc-ccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECcHHHHHH
Confidence 564 568899999999999 69999999999998865433222222234456779999998 6999999999876
Q ss_pred HHhhc--------------------------------cCCCccCCCCCcHHHHHH----HHHHHHH----hcChHHHHH-
Q 013008 332 VASAI--------------------------------NYGDHGSTFAGSPLVCNA----AIAVLDK----ISNPAFLAS- 370 (451)
Q Consensus 332 i~~~~--------------------------------~~~~~~~t~~~~~~~~aa----a~aal~~----~~~~~~~~~- 370 (451)
+++.+ .......+.+.+++.+++ ++++|.. -....+.++
T Consensus 336 li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~ 415 (533)
T 3f6t_A 336 NIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIA 415 (533)
T ss_dssp HHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHH
T ss_pred HHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHH
Confidence 54433 233344556677777766 4444420 001122211
Q ss_pred ----------HHhC--CCCcceecccceeEEEEec------------------CChHHHHHHHH-HCCceeeecCC----
Q 013008 371 ----------KLAR--NPHVKDVRGLGLIIGIEFD------------------VSATPVVDACR-DSGLLVLTAGK---- 415 (451)
Q Consensus 371 ----------~~~~--~~~~~~v~g~G~~~~~~~~------------------~~~~~~~~~l~-~~Gv~~~~~~~---- 415 (451)
+.+. .+........|++.++++. ....+++..++ ++||++.|+..
T Consensus 416 ~~~~~~r~~~l~~~L~~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~ 495 (533)
T 3f6t_A 416 RKLVSERYDQLHDAMQAPKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAK 495 (533)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSS
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCC
Confidence 1111 3321112344667777663 13456666666 67999987531
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 416 GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 416 ~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
.+.+|+++. .++++++++++++|.++++++.
T Consensus 496 ~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~~ 526 (533)
T 3f6t_A 496 PGELRVSQA-NLPTEDYALIGKQVLELLKEYY 526 (533)
T ss_dssp TTEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEe-eCCHHHHHHHHHHHHHHHHHHH
Confidence 367999763 3689999999999999998765
No 132
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.93 E-value=5.3e-25 Score=217.88 Aligned_cols=301 Identities=14% Similarity=0.091 Sum_probs=199.0
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 013008 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~ 190 (451)
.+|+|.+++.+++.. +. .....+...++++++++.++. +.+++++||++|++.+++.+. .++
T Consensus 30 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-----------~~g 95 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FR-TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-----------TKK 95 (376)
T ss_dssp CCHHHHHHHTSCCCC--CS-SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-----------CTT
T ss_pred CcHHHHHHhcCCCCC--CC-CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-----------CCC
Confidence 578888888765422 11 111123467788888888762 345559999999999999765 168
Q ss_pred ceEEEEcCCccCChhhhhh-ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHH
Q 013008 191 TEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFL 269 (451)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l 269 (451)
|+||+.+++||+....... ..+.... ..+...+. ..|+++|++++.+ ++++|+++++++++|.+.+ +
T Consensus 96 d~vi~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~----~~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~----l 163 (376)
T 3f0h_A 96 DKVLVIDGGSFGHRFVQLCEIHEIPYV---ALKLEHGK----KLTKEKLYEYDNQ-NFTGLLVNVDETSTAVLYD----T 163 (376)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTCCEE---EEECCTTC----CCCHHHHHTTTTS-CCCEEEEESEETTTTEECC----H
T ss_pred CeEEEEeCChhhHHHHHHHHHcCCceE---EEeCCCCC----CCCHHHHHHhhcc-CceEEEEecccCCcceecC----H
Confidence 9999999999885433111 1121110 01111111 1289999998754 6778888888888888766 9
Q ss_pred HHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCCc--------
Q 013008 270 QFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGDH-------- 341 (451)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~~-------- 341 (451)
++|+++|++||+++|+||+|+.+++. +..+.+++.+.+.+++|+++++.++|++++++++++.+.....
T Consensus 164 ~~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (376)
T 3f0h_A 164 MMIGEFCKKNNMFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLK 240 (376)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHH
T ss_pred HHHHHHHHHcCCEEEEEcCccccCcc---ccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHH
Confidence 99999999999999999999865432 2344556555556778999866678889999998887754211
Q ss_pred ---------cCCCCCcHHHHHHHHHHHHHhcCh----HHHHH-------HHh---CCCCcceec--ccceeEEEEe-cCC
Q 013008 342 ---------GSTFAGSPLVCNAAIAVLDKISNP----AFLAS-------KLA---RNPHVKDVR--GLGLIIGIEF-DVS 395 (451)
Q Consensus 342 ---------~~t~~~~~~~~aaa~aal~~~~~~----~~~~~-------~~~---~~~~~~~v~--g~G~~~~~~~-~~~ 395 (451)
...++.+..+++++.++++.+.+. ...++ +.+ +++ +.... ..+.++.+.. ..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~ 319 (376)
T 3f0h_A 241 DALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLP-FELVSESPANGVTSVHPTTAN 319 (376)
T ss_dssp HHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS-EEECCSSBBTTEEEEEESSSC
T ss_pred HHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-CccCccccCceEEEEeCCCCC
Confidence 113344555556777777765433 12221 222 222 11111 1223333333 346
Q ss_pred hHHHHHHHHHC-CceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 396 ATPVVDACRDS-GLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 396 ~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
..++.+.|.++ ||.+.++. .++.+|++++..+|+|++++++++|++++++
T Consensus 320 ~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 320 AYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp HHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 78899999998 99998763 1468999999999999999999999998864
No 133
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.93 E-value=1.5e-25 Score=222.78 Aligned_cols=304 Identities=17% Similarity=0.103 Sum_probs=205.3
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC---CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~ 191 (451)
.+|++.+|+.+++.. +. .........+++++++++++. +++++++||++|++.+++.+. .+++
T Consensus 34 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~-----------~~gd 99 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HM-QKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL-----------EPGD 99 (393)
T ss_dssp CCHHHHHHTTCCCCC--TT-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC-----------CTTC
T ss_pred CCHHHHHHhcccccC--cc-cHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC-----------CCCC
Confidence 678888888764321 11 111123467889999998872 369999999999999999764 2689
Q ss_pred eEEEEcCCccCChh-hhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHH
Q 013008 192 EFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (451)
Q Consensus 192 ~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~ 270 (451)
+||+.+++||+... ......+..... .+...+. ..|+++|++.++++++++|+++++++++|.+.+ ++
T Consensus 100 ~vl~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~----~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~----l~ 168 (393)
T 3kgw_A 100 SFLTGTNGIWGMRAAEIADRIGARVHQ---MIKKPGE----HYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP----LD 168 (393)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEE---EECCTTC----CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC----CT
T ss_pred EEEEEeCCchhHHHHHHHHHcCCceEE---EeCCCCC----CCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc----HH
Confidence 99999999876432 222222211110 1111111 138999999997546788888888888887766 88
Q ss_pred HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cccccCCcccccccccHHHHhhccCCCc-------
Q 013008 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVTEKVASAINYGDH------- 341 (451)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~~~i~~~~~~~~~------- 341 (451)
+|+++|++||++||+||+|+ +| +..+..+.++ +|++++ +|+++++.++|++++++++++.+.....
T Consensus 169 ~i~~l~~~~~~~li~De~~~-~g--~~~~~~~~~~--~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 243 (393)
T 3kgw_A 169 GFGELCHRYQCLLLVDSVAS-LG--GVPIYMDQQG--IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYT 243 (393)
T ss_dssp THHHHHHHTTCEEEEECTTT-TT--TSCCCTTTTT--CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTT
T ss_pred HHHHHHHHcCCEEEEECCcc-cc--CcccchhhcC--CCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceee
Confidence 99999999999999999996 32 2222233333 566654 5999877779999999999888753211
Q ss_pred ----------------cCCCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCCccee-----ccccee
Q 013008 342 ----------------GSTFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPHVKDV-----RGLGLI 387 (451)
Q Consensus 342 ----------------~~t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~~~~v-----~g~G~~ 387 (451)
..+++.++.+++++.++++.+.++ +..++ .++++. +... ...+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~ 322 (393)
T 3kgw_A 244 DITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMG-LKFFVKDPEIRLPTI 322 (393)
T ss_dssp CHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSSSGGGBCSSE
T ss_pred cHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC-CeeccCChhhcCCeE
Confidence 113455788888888888765432 22222 222222 1111 122466
Q ss_pred EEEEec--CChHHHHHHHHHC-CceeeecC---CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013008 388 IGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCKTLPVLDSN 449 (451)
Q Consensus 388 ~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~-~~~~t~e~i~~~l~~l~~~l~~~~~~ 449 (451)
+++.+. .+..++.+.|+++ ||.+.++. .++.+|+++ ++.++++++++++++|++++++++.+
T Consensus 323 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~~ 391 (393)
T 3kgw_A 323 TTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCPKN 391 (393)
T ss_dssp EEEECCTTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCBC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 667763 4578899999988 99998753 247899998 77779999999999999999887644
No 134
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.93 E-value=1.4e-24 Score=217.04 Aligned_cols=298 Identities=16% Similarity=0.092 Sum_probs=199.6
Q ss_pred CHHHHHHHHHHHh-hcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEE
Q 013008 116 DADWIKAVVDQAN-VLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFV 194 (451)
Q Consensus 116 ~p~v~~a~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii 194 (451)
.+.+.+++..+.. ...+.+..+..+...+++++++++++.+.+++++||++|+..+++.+. .++++||
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~-----------~~gd~vi 107 (398)
T 2rfv_A 39 FDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLC-----------QQGDHIV 107 (398)
T ss_dssp CSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEE
T ss_pred cCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEE
Confidence 4555555542111 122333445677789999999999997788899999999999999764 1588999
Q ss_pred EEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHH
Q 013008 195 SFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRD 274 (451)
Q Consensus 195 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~ 274 (451)
+.++.||+.......... .....+..++.+|+++|++.+++ ++++|+++++++++|.+.+ +++|++
T Consensus 108 ~~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~ 173 (398)
T 2rfv_A 108 SASAIYGCTHAFLSHSMP---------KFGINVRFVDAAKPEEIRAAMRP-ETKVVYIETPANPTLSLVD----IETVAG 173 (398)
T ss_dssp EESSSCHHHHHHHHTHHH---------HTTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSBTTTTBCCC----HHHHHH
T ss_pred EcCCCcccHHHHHHHHHH---------HcCCEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccC----HHHHHH
Confidence 999999886543311100 01123456677799999999975 6889999999888888776 999999
Q ss_pred HHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccC-Cccc-ccccccHHHHh-hccCCCccC-CCCCcHH
Q 013008 275 ACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTEKVAS-AINYGDHGS-TFAGSPL 350 (451)
Q Consensus 275 l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~~i~~-~~~~~~~~~-t~~~~~~ 350 (451)
+|++||+++|+||+|..+ ..+... .++....+.+++|.+++ |+|+ |++++++++++ .+....... +.+.+++
T Consensus 174 l~~~~~~~li~De~~~~~-~~~~~~---~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (398)
T 2rfv_A 174 IAHQQGALLVVDNTFMSP-YCQQPL---QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPF 249 (398)
T ss_dssp HHHHTTCEEEEECTTTCT-TTCCGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHH
T ss_pred HHHHcCCEEEEECCCccc-ccCCch---hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHH
Confidence 999999999999999743 222221 23433444688999975 7898 99999998876 555433333 4677899
Q ss_pred HHHHHHHHHHHhcC--hHHHHH------HHhCCC--------------Cccee----cccceeEEEEecCC---hHHHHH
Q 013008 351 VCNAAIAVLDKISN--PAFLAS------KLARNP--------------HVKDV----RGLGLIIGIEFDVS---ATPVVD 401 (451)
Q Consensus 351 ~~aaa~aal~~~~~--~~~~~~------~~~~~~--------------~~~~v----~g~G~~~~~~~~~~---~~~~~~ 401 (451)
.++++.++|+.+.. +...++ .+++++ .+... ++.|.++++++... ...+.+
T Consensus 250 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~ 329 (398)
T 2rfv_A 250 NAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMIN 329 (398)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHT
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHH
Confidence 99999988864321 111111 333332 11111 24688888888522 222333
Q ss_pred HHHHCCceeeec-------------------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008 402 ACRDSGLLVLTA-------------------------G-KGNVVRLVPPLIISEQELDQAVEILCKT 442 (451)
Q Consensus 402 ~l~~~Gv~~~~~-------------------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~ 442 (451)
.+...|+.+.++ + ..+.+|++++...+++++++++++|+++
T Consensus 330 ~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 330 SVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp TCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred hCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 333335554433 1 1378999999999999998888887653
No 135
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.93 E-value=2.9e-24 Score=213.83 Aligned_cols=280 Identities=16% Similarity=0.139 Sum_probs=194.2
Q ss_pred cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (451)
Q Consensus 134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (451)
+..++++...+++++++++++.+..++++||++|+..+++.+. .++++|++.++.||+..........
T Consensus 46 ~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~~-----------~~g~~vl~~~~~~~~~~~~~~~~~~- 113 (386)
T 1cs1_A 46 YSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-----------KPGDLLVAPHDCYGGSYRLFDSLAK- 113 (386)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHHHHHT-
T ss_pred eeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-----------CCCCEEEEecCCcHhHHHHHHHHHH-
Confidence 3455667788999999999986566666888999999999763 1588999999999874322111100
Q ss_pred CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC
Q 013008 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG 293 (451)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g 293 (451)
.....+..++.+|+++|++++++ ++++|+++++++++|.+.+ +++|+++|++||+++|+||+|+++.
T Consensus 114 --------~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~ 180 (386)
T 1cs1_A 114 --------RGCYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPA 180 (386)
T ss_dssp --------TTSCEEEEECTTCHHHHHHHHHT-CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred --------hcCCEEEEeCCCCHHHHHHhhcc-CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccc
Confidence 11234556777899999999974 6788999999999898776 9999999999999999999998764
Q ss_pred cccccccccccCCCcceeeecccccC-Cccc-ccccccH-HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--hHHH
Q 013008 294 RTGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTE-KVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PAFL 368 (451)
Q Consensus 294 r~G~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~-~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~ 368 (451)
.. .. . .++....+.+++|++++ |.++ |++++++ ++++.+.+.....+.+.++++++++.++++.+.. +...
T Consensus 181 ~~-~~--~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 256 (386)
T 1cs1_A 181 LQ-NP--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQ 256 (386)
T ss_dssp TC-CG--G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cC-Cc--c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHHHHHHHHHH
Confidence 32 11 1 23433334478999985 5666 9998875 8888776544444566789988887777764311 1111
Q ss_pred HH------HHhCCCCcce------------------ecccceeEEEEecCChHHHHHHHHHCCceeeec--C--------
Q 013008 369 AS------KLARNPHVKD------------------VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA--G-------- 414 (451)
Q Consensus 369 ~~------~~~~~~~~~~------------------v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--~-------- 414 (451)
++ .+++++.+.. .++.|.++.+.+......+.+.|.++||++.+. +
T Consensus 257 ~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~sl~~~ 336 (386)
T 1cs1_A 257 RNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISH 336 (386)
T ss_dssp HHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCSSSCEEEE
T ss_pred HHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHhCCcceEcccCCCcceeeec
Confidence 11 3333332211 134588888888544567788888899988641 1
Q ss_pred -------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008 415 -------------------KGNVVRLVPPLIISEQELDQAVEILCKT 442 (451)
Q Consensus 415 -------------------~~~~iri~~~~~~t~e~i~~~l~~l~~~ 442 (451)
..+.+|++++...++++++.+.+.|+++
T Consensus 337 ~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 337 AATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp GGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 1378999999877777766666665543
No 136
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.93 E-value=1.2e-24 Score=213.86 Aligned_cols=312 Identities=13% Similarity=0.118 Sum_probs=208.9
Q ss_pred EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHH
Q 013008 99 EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKF 174 (451)
Q Consensus 99 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~ 174 (451)
+++||..| +++ .+|+|++|+.+++ .+.+..+......+++++++++++. +++++++||++|++.++++
T Consensus 4 ~~~~~~~g----p~~-~~~~v~~a~~~~~---~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~ 75 (366)
T 1m32_A 4 NYLLLTPG----PLT-TSRTVKEAMLFDS---CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS 75 (366)
T ss_dssp -CEECSSS----SCC-CCHHHHHTTCCCC---CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHH
T ss_pred ccccccCC----CcC-CCHHHHHHHhhhh---cCCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHH
Confidence 35777776 233 7899999987743 1211101113367888888888872 3799999999999999997
Q ss_pred HHHHhhhcCCCCCCCCceEEEEcCCccCChh-hhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC-CeEEEEE
Q 013008 175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-KTAAVFV 252 (451)
Q Consensus 175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~aavi~ 252 (451)
++. ++++||++++.||+... ......|..... .+.... ...|+++|+++++++ ++++|++
T Consensus 76 ~~~-----------~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~----~~~d~~~l~~~l~~~~~~~~v~~ 137 (366)
T 1m32_A 76 ALG-----------PQDKVLIVSNGAYGARMVEMAGLMGIAHHA---YDCGEV----ARPDVQAIDAILNADPTISHIAM 137 (366)
T ss_dssp SCC-----------TTCCEEEEESSHHHHHHHHHHHHHTCCEEE---EECCTT----SCCCHHHHHHHHHHCTTCCEEEE
T ss_pred hcC-----------CCCeEEEEeCCCccHHHHHHHHHhCCceEE---EeCCCC----CCCCHHHHHHHHhcCCCeEEEEE
Confidence 641 57889999988887532 222222211100 111111 114899999998742 4566666
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcccccccccH
Q 013008 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTE 330 (451)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~ 330 (451)
...++++|.+.+ +++|+++|++||+++|+||+|+ +|... ..... ..+|++ +++|+++++.++|++++++
T Consensus 138 ~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~~--~~~di~~~s~~K~~~~~~g~G~~~~~~ 208 (366)
T 1m32_A 138 VHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIAA--LHIDYLISSANKCIQGVPGFAFVIARE 208 (366)
T ss_dssp ESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTTT--TTCSEEEEESSSTTCCCSSEEEEEEEH
T ss_pred ecccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC--ccccc--cCccEEEecCcccccCCCceEEEEECH
Confidence 666666777666 8999999999999999999996 43332 11222 236766 5689997666779999999
Q ss_pred HHHhhccCCCc------------------cCCCCCcHHHHHHHHHHHHHhcCh----HHHHH----------HHhCCCCc
Q 013008 331 KVASAINYGDH------------------GSTFAGSPLVCNAAIAVLDKISNP----AFLAS----------KLARNPHV 378 (451)
Q Consensus 331 ~i~~~~~~~~~------------------~~t~~~~~~~~aaa~aal~~~~~~----~~~~~----------~~~~~~~~ 378 (451)
++++.+..... ...++.++++++++.++++.+... ...++ .++++. +
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~-~ 287 (366)
T 1m32_A 209 QKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALG-F 287 (366)
T ss_dssp HHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCC-C
Confidence 99888754211 013567888888888888876432 12222 122222 2
Q ss_pred ceec----ccceeEEEEecC----ChHHHHHHHHHCCceeeecCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 379 KDVR----GLGLIIGIEFDV----SATPVVDACRDSGLLVLTAGK--GNVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 379 ~~v~----g~G~~~~~~~~~----~~~~~~~~l~~~Gv~~~~~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
.... ..|.++++.+.. ...++.+.|.++||.+.++.. .+.+|++++..++++++++++++|+++++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 365 (366)
T 1m32_A 288 NTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYWT 365 (366)
T ss_dssp CBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred eeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Confidence 1111 246688888742 577899999999999988642 3789999999899999999999999887543
No 137
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.93 E-value=1.8e-24 Score=215.68 Aligned_cols=315 Identities=11% Similarity=0.073 Sum_probs=201.9
Q ss_pred CEEEeeccCcccccCCCCC--HHHHHHHHH-HHhhcc-cccC--CCCCHHHHHHHHHHhhccC----CC--eEEecCCHH
Q 013008 98 REYLDLSSGIAVNALGHGD--ADWIKAVVD-QANVLT-HVSN--MYYSIPQIELAKRLVACSF----AD--RVFFSNTGT 165 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~--p~v~~a~~~-~~~~~~-~~~~--~~~~~~~~~l~~~l~~~~~----~e--~v~~~~sG~ 165 (451)
..+|||..|.+..+.|+.+ |+|++++.+ +++... +.+. .+..+.+.++++++....+ .+ ++++|+||+
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~ 105 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence 4589999997655566655 999999999 886522 1111 1122335566666654333 56 899999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----C---CHHHH
Q 013008 166 EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----G---NIEAT 238 (451)
Q Consensus 166 eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---d~~~l 238 (451)
+|+..+++++.... ++++|++.+|+|+++.......+.. +..++. + |+++|
T Consensus 106 ~a~~~~~~~~~~~~---------~gd~vl~~~p~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~d~~~l 163 (397)
T 3fsl_A 106 GALKVGADFLKRYF---------PESGVWVSDPTWENHVAIFAGAGFE-------------VSTYPWYDEATNGVRFNDL 163 (397)
T ss_dssp HHHHHHHHHHHHHC---------TTCCEEEESSCCHHHHHHHHHTTCC-------------EEEECCEETTTTEECHHHH
T ss_pred HHHHHHHHHHHhcC---------CCCeEEEeCCCchhHHHHHHHcCCc-------------eEEEeeeeccCCcCcHHHH
Confidence 99999987654332 5889999999999876544333221 222222 2 89999
Q ss_pred HHhcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc--ccccc----cccCCCcce
Q 013008 239 RKLIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG--YLWAH----EHYGIFPDI 310 (451)
Q Consensus 239 e~~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G--~~~~~----~~~~~~pdi 310 (451)
++.++. .++++++++..++++|. .++.+.+++|+++|++||+++|+||+|.+|...+ ..... +..+....+
T Consensus 164 ~~~l~~~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (397)
T 3fsl_A 164 LATLKTLQAGSIVLLHPCCHNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVS 242 (397)
T ss_dssp HHHHTTCCTTCEEEECSSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEE
T ss_pred HHHHHhCCCCCEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEE
Confidence 999973 35667776666666665 5788899999999999999999999999886542 11111 122333445
Q ss_pred eeeccccc-CCcccccccc---cHHHHhhccCC----CccCCCCCcHHHHHHHHHHHHHhc--C--hHHH----HH----
Q 013008 311 MTLAKPLA-GGLPIGAALV---TEKVASAINYG----DHGSTFAGSPLVCNAAIAVLDKIS--N--PAFL----AS---- 370 (451)
Q Consensus 311 ~t~sK~lg-~G~~iG~v~~---~~~i~~~~~~~----~~~~t~~~~~~~~aaa~aal~~~~--~--~~~~----~~---- 370 (451)
.++||.++ .|+|+||+++ ++++++.+... ....+.+.++++++++.++++... . .++. ++
T Consensus 243 ~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 322 (397)
T 3fsl_A 243 NSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAM 322 (397)
T ss_dssp EECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999 6999999964 45655543211 112334446677777665554210 0 1111 11
Q ss_pred ------HHhCCC---Ccceec-ccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 013008 371 ------KLARNP---HVKDVR-GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILC 440 (451)
Q Consensus 371 ------~~~~~~---~~~~v~-g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~ 440 (451)
.++.++ .+.... ..|+++++.+ ....+.+.|.++||++.|++ |+++. .+++++|++++++|+
T Consensus 323 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~-----Ris~~-~~~~~~i~~~~~~l~ 394 (397)
T 3fsl_A 323 RQELVKVLSTEMPERNFDYLLNQRGMFSYTGL--SAAQVDRLREEFGVYLIASG-----RMCVA-GLNTANVQRVAKAFA 394 (397)
T ss_dssp HHHHHHHHHHHCTTSCCTHHHHCCSSEEECCC--CHHHHHHHHHTTCEECCTTC-----EEEGG-GCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCceeecCCceEEEecCC--CHHHHHHHHHhCCEEECCCC-----eEEEE-ecCHhhHHHHHHHHH
Confidence 112221 122222 3466666554 34556667778899998764 88764 447788999999998
Q ss_pred HHH
Q 013008 441 KTL 443 (451)
Q Consensus 441 ~~l 443 (451)
+++
T Consensus 395 ~~l 397 (397)
T 3fsl_A 395 AVM 397 (397)
T ss_dssp HHC
T ss_pred hhC
Confidence 763
No 138
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.93 E-value=5.7e-25 Score=220.73 Aligned_cols=324 Identities=14% Similarity=0.059 Sum_probs=202.9
Q ss_pred CCCEEEeeccCcccccCCC--CCHHHHHHHHH-HHhhcc-ccc--CCCCCHHHHHHHHHHhhccC----CCeEEe--cCC
Q 013008 96 EGREYLDLSSGIAVNALGH--GDADWIKAVVD-QANVLT-HVS--NMYYSIPQIELAKRLVACSF----ADRVFF--SNT 163 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~--~~p~v~~a~~~-~~~~~~-~~~--~~~~~~~~~~l~~~l~~~~~----~e~v~~--~~s 163 (451)
+|+.+|||.+|.+...-|+ .+|.+.+++.+ +++... +.+ ..+..+.+..+++++....+ .++|++ |+|
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g 106 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS 106 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc
Confidence 3567899998876443443 56899999998 775321 111 11122224455555533322 679999 999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC-CC-CeeEeeCCCHHHHHHh
Q 013008 164 GTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MP-GVNFVEYGNIEATRKL 241 (451)
Q Consensus 164 G~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~d~~~le~~ 241 (451)
|++|++.+++++..+. ++++|++.+|+|+++.......+.... . .+. .+ +.. .|+++|++.
T Consensus 107 ~~~a~~~~~~~~~~~~---------~gd~Vl~~~p~~~~~~~~~~~~g~~~~-~---v~~~~~~~~~----~d~~~l~~~ 169 (412)
T 1yaa_A 107 GTGALHISAKFFSKFF---------PDKLVYLSKPTWANHMAIFENQGLKTA-T---YPYWANETKS----LDLNGFLNA 169 (412)
T ss_dssp HHHHHHHHHHHHHHHC---------TTCCEEEEESCCTTHHHHHHTTTCCEE-E---EECEETTTTE----ECHHHHHHH
T ss_pred hHhHHHHHHHHHHHhC---------CCCEEEEeCCCCccHHHHHHHcCceEE-E---EeeecCCCCc----cCHHHHHHH
Confidence 9999999977665442 578999999999997654433221111 0 011 00 111 279999998
Q ss_pred cCCC--CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccc---ccccc-cccCCCc------c
Q 013008 242 IQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTG---YLWAH-EHYGIFP------D 309 (451)
Q Consensus 242 l~~~--~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G---~~~~~-~~~~~~p------d 309 (451)
+++. ..+++++...++++| ..++.+.+++|.++|++||+++|+||+|.+|++.+ ..... ......+ .
T Consensus 170 l~~~~~~~~~~~~~~p~nPtG-~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 248 (412)
T 1yaa_A 170 IQKAPEGSIFVLHSCAHNPTG-LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFV 248 (412)
T ss_dssp HHHSCTTCEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEE
T ss_pred HHhCCCCCEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEE
Confidence 8632 244454344444455 46789999999999999999999999999886654 22122 1111123 2
Q ss_pred eeeecccccC-Cccccccc--c-----cHH----HHhhccCCCccCCCCCcHHHHHHHHHHHHHhc----ChHHHHH---
Q 013008 310 IMTLAKPLAG-GLPIGAAL--V-----TEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDKIS----NPAFLAS--- 370 (451)
Q Consensus 310 i~t~sK~lg~-G~~iG~v~--~-----~~~----i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~----~~~~~~~--- 370 (451)
+.++||.++. |+|+||++ + +++ +++.+.......+.+.++++++++.++|+... -+++.++
T Consensus 249 ~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1yaa_A 249 CQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSS 328 (412)
T ss_dssp EEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred EeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4588999997 99999998 7 666 77766542223334558899999888887431 0011111
Q ss_pred -----------HHhCCC---Ccceecc-cceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHH
Q 013008 371 -----------KLARNP---HVKDVRG-LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQA 435 (451)
Q Consensus 371 -----------~~~~~~---~~~~v~g-~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~ 435 (451)
.+++++ .+....+ .|+++++.+ +...+...+.++||++.+ .+|++++. +++++++++
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~-----~~Ris~~~-~~~~~i~~~ 400 (412)
T 1yaa_A 329 RITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL--TPQMVKRLEETHAVYLVA-----SGRASIAG-LNQGNVEYV 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC--CHHHHHHHHHHHCEECCT-----TSEEEGGG-CCTTTHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC--CHHHHHHHHHhCCEEecc-----CcEEEEcc-CCHhHHHHH
Confidence 122222 1222233 345555433 345554444478999986 26998774 589999999
Q ss_pred HHHHHHHHHH
Q 013008 436 VEILCKTLPV 445 (451)
Q Consensus 436 l~~l~~~l~~ 445 (451)
+++|+++++.
T Consensus 401 ~~~l~~~~~~ 410 (412)
T 1yaa_A 401 AKAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 139
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.93 E-value=5.5e-25 Score=220.08 Aligned_cols=316 Identities=17% Similarity=0.146 Sum_probs=204.8
Q ss_pred CEEEeeccCcccccCCCCCHHHHHHHHHHHhh-cccccC--CC--CCHHHHHHH----HHHhhccCCCeE-EecCCHHHH
Q 013008 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANV-LTHVSN--MY--YSIPQIELA----KRLVACSFADRV-FFSNTGTEA 167 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~~--~~--~~~~~~~l~----~~l~~~~~~e~v-~~~~sG~eA 167 (451)
++|||+.++... + +|+|.+|+.+++.+ ..+.+. .+ .......++ ++++++++.+.. +++++|++|
T Consensus 23 ~~~i~~~~~~~~--~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a 97 (407)
T 2dkj_A 23 REGLELIASENF--V---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQA 97 (407)
T ss_dssp HTSEECCTTCCC--C---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred hcceeeccCCCC--C---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence 467899888763 3 89999999998864 222211 11 223222232 478888885544 567789999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChh--hhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC
Q 013008 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTM--GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245 (451)
Q Consensus 168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 245 (451)
++.+++++. .++++|++.+++|++... ..+...+.......+ +..++. ...|+++|++.+++.
T Consensus 98 ~~~~~~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~---~~~d~~~l~~~l~~~ 162 (407)
T 2dkj_A 98 NMAVYMALM-----------EPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSY-GVRPDT---ELIDLEEVRRLALEH 162 (407)
T ss_dssp HHHHHHHHC-----------CTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEE-CCCTTT---SSCCHHHHHHHHHHH
T ss_pred HHHHHHHhc-----------CCCCEEEEecccccCccchHHHHHhcCceEEEEec-CCCccc---CccCHHHHHHHHhhc
Confidence 999999774 158899999999988741 222222210000000 000000 113899999998632
Q ss_pred CeEEEEE-ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC-CCcccccccccccCCCccee--eecccccCCc
Q 013008 246 KTAAVFV-EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG-LGRTGYLWAHEHYGIFPDIM--TLAKPLAGGL 321 (451)
Q Consensus 246 ~~aavi~-ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg-~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~ 321 (451)
++++|++ +|+++ ...+ +++|.++|++||++||+||+|++ +...|.... ..+ .+|++ +++|+++ |.
T Consensus 163 ~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~-g~ 231 (407)
T 2dkj_A 163 RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLR-GP 231 (407)
T ss_dssp CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGC-CC
T ss_pred CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCC-CC
Confidence 4566666 67765 3333 89999999999999999999975 433343211 111 26776 7899887 45
Q ss_pred cccccccc-HHHHhhccCCC-ccCCCCCcHHHHHHHHHHHHHhcC---hHHHHH----------HHhCCCCccee--ccc
Q 013008 322 PIGAALVT-EKVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISN---PAFLAS----------KLARNPHVKDV--RGL 384 (451)
Q Consensus 322 ~iG~v~~~-~~i~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~----------~~~~~~~~~~v--~g~ 384 (451)
++|+++++ +++++.+.... ...+.+.++..++++.++++.+.. +++.++ .++.++ +..+ ++.
T Consensus 232 ~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~ 310 (407)
T 2dkj_A 232 RGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRG-YRIVTGGTD 310 (407)
T ss_dssp SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCS
T ss_pred CceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCC-ceeecCCCC
Confidence 78999999 89888775432 233344567777777788876533 222222 222232 2222 356
Q ss_pred ceeEEEEecC---ChHHHHHHHHHCCceeeecC---------CCCEEEEeCCC----CCCHHHHHHHHHHHHHHHHH
Q 013008 385 GLIIGIEFDV---SATPVVDACRDSGLLVLTAG---------KGNVVRLVPPL----IISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 385 G~~~~~~~~~---~~~~~~~~l~~~Gv~~~~~~---------~~~~iri~~~~----~~t~e~i~~~l~~l~~~l~~ 445 (451)
|.++++.+.. ...++.+.|.++||.+.++. .++.+|++++. .++++++++++++|++++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 311 NHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp SSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred ceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 8888888842 57789999999999998752 13679998765 37999999999999999876
No 140
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.92 E-value=2e-24 Score=216.14 Aligned_cols=299 Identities=13% Similarity=0.095 Sum_probs=202.7
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e-~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~ 191 (451)
.+|++.+++.+++. .+. .........+++++++++++ .+ .+++++||++|++.+++.+. .+++
T Consensus 24 ~~~~v~~a~~~~~~--~~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~-----------~~gd 89 (411)
T 3nnk_A 24 ADPRVLRAMSSQLI--GQY-DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI-----------RPGD 89 (411)
T ss_dssp CCHHHHHHHTSCCC--CTT-CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC-----------CTTC
T ss_pred CCHHHHHHhhcccc--ccc-cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc-----------CCCC
Confidence 57888888776431 111 00112336788899998887 33 48899999999999999774 2689
Q ss_pred eEEEEcCCccCChh-hhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCCCeEEEEEccccCCCCccccC
Q 013008 192 EFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIYSAT 265 (451)
Q Consensus 192 ~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~ 265 (451)
+||+.+++||+... ......+. .+..++.+ |+++|+++++++++++|+++++++++|.+.+
T Consensus 90 ~Vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~- 156 (411)
T 3nnk_A 90 KVLVPVFGRFGHLLCEIARRCRA------------EVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP- 156 (411)
T ss_dssp EEEEEECSHHHHHHHHHHHHTTC------------EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC-
T ss_pred EEEEecCCchHHHHHHHHHHcCC------------eEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc-
Confidence 99999999988421 11122221 12223322 8999999997446788888888888888766
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCcccccccccHHHHhhccCCC-----
Q 013008 266 KEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGLPIGAALVTEKVASAINYGD----- 340 (451)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~~iG~v~~~~~i~~~~~~~~----- 340 (451)
+++|+++|++||+++|+||+++ +|.. .+....+++...+.+++|+++++.++|++++++++++.+....
T Consensus 157 ---l~~i~~l~~~~~~~li~Dea~~-~~~~--~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~ 230 (411)
T 3nnk_A 157 ---LAELGEICRRYDALFYTDATAS-LGGN--PLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEG 230 (411)
T ss_dssp ---CTTHHHHHHHHTCEEEEECTTT-BTTB--CCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGG
T ss_pred ---HHHHHHHHHHcCCEEEEECCcc-cCCc--ccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhccccccc
Confidence 8899999999999999999986 3221 1223333433333456698877778999999999887765321
Q ss_pred -------------------------------ccCCCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCC
Q 013008 341 -------------------------------HGSTFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNP 376 (451)
Q Consensus 341 -------------------------------~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~ 376 (451)
.....+.++.+++++.++++.+... +..++ .++...
T Consensus 231 ~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g 310 (411)
T 3nnk_A 231 IRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMG 310 (411)
T ss_dssp GCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0112345777888887888765432 22222 122222
Q ss_pred Cccee----cccceeEEEEec--CChHHHHHHHHHC-CceeeecC---CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHH
Q 013008 377 HVKDV----RGLGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 377 ~~~~v----~g~G~~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~-~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
+... ...+.++++.+. .+..++.+.|+++ ||.+.++. .++.+|+++ +..++++++++++++|++++++
T Consensus 311 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 389 (411)
T 3nnk_A 311 -LETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNY 389 (411)
T ss_dssp -CCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred -CEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHH
Confidence 1111 123667777773 4578899999887 99998752 246899997 7788999999999999999987
Q ss_pred Hh
Q 013008 446 LD 447 (451)
Q Consensus 446 ~~ 447 (451)
+.
T Consensus 390 ~~ 391 (411)
T 3nnk_A 390 LK 391 (411)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 141
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.92 E-value=1.3e-23 Score=207.68 Aligned_cols=310 Identities=14% Similarity=0.087 Sum_probs=207.1
Q ss_pred EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCC------CCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHH
Q 013008 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMY------YSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAA 171 (451)
Q Consensus 100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~a 171 (451)
|+|+.++ +..+|.+.+++.+++.+........ ..+...+++++++++++ .+++++++||++|+..+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~ 76 (382)
T 4hvk_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHH
T ss_pred eecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHH
Confidence 6776653 3578999999999987632211111 12235688999999887 45899999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc--cCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCC
Q 013008 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQP 244 (451)
Q Consensus 172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~ 244 (451)
++++..... .+++.||+.++.|++.......+ .+. .+..++.+ |+++|++++++
T Consensus 77 ~~~~~~~~~-------~~gd~vi~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~~ 137 (382)
T 4hvk_A 77 IIGYAMRNA-------RKGKHILVSAVEHMSVINPAKFLQKQGF------------EVEYIPVGKYGEVDVSFIDQKLRD 137 (382)
T ss_dssp HHHHHHHHG-------GGCCEEEEETTCCHHHHHHHHHHHHTTC------------EEEEECBCTTSCBCHHHHHHHCCT
T ss_pred HHHhhhhhc-------CCCCEEEECCCCcHHHHHHHHHHHhcCC------------EEEEeccCCCCCcCHHHHHHHhcc
Confidence 997653211 05889999999998765443222 111 12222222 89999999975
Q ss_pred CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcc
Q 013008 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLP 322 (451)
Q Consensus 245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~ 322 (451)
++++|+++++++++|.+.+ +++|.++|++||+ +|+||+|+ +|.. .......+ +|++ +++|.+| +.+
T Consensus 138 -~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~~--~d~~~~s~~K~~g-~~g 205 (382)
T 4hvk_A 138 -DTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKIG--ADMLTISSNDIYG-PKG 205 (382)
T ss_dssp -TEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHHT--CSEEEEESGGGTS-CTT
T ss_pred -CceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhcC--CCEEEEeHHHhcC-CCc
Confidence 6789999999888888776 8999999999999 99999985 3221 11222333 4555 5679654 234
Q ss_pred cccccccHHHHhhccCCCc-------cCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----------HHhCCCCcceecc
Q 013008 323 IGAALVTEKVASAINYGDH-------GSTFAGSPLVCNAAIAVLDKISN--PAFLAS----------KLARNPHVKDVRG 383 (451)
Q Consensus 323 iG~v~~~~~i~~~~~~~~~-------~~t~~~~~~~~aaa~aal~~~~~--~~~~~~----------~~~~~~~~~~v~g 383 (451)
+|+++++++. .+.+... ....+.++..++++.++++.+.+ +...++ .++.+|.+.....
T Consensus 206 ~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 283 (382)
T 4hvk_A 206 VGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGH 283 (382)
T ss_dssp CEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSC
T ss_pred eEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC
Confidence 7888777654 2222211 11334467777777777765432 122221 2334554432222
Q ss_pred c----ceeEEEEec-CChHHHHHHHHHCCceeeecCC----------------------CCEEEEeCCCCCCHHHHHHHH
Q 013008 384 L----GLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQAV 436 (451)
Q Consensus 384 ~----G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~----------------------~~~iri~~~~~~t~e~i~~~l 436 (451)
. +.++.+.+. .+..++.+.|.++||.+.++.. .+.+|++++..+|+|++++++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~ 363 (382)
T 4hvk_A 284 PEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLL 363 (382)
T ss_dssp SSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHH
T ss_pred ccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHH
Confidence 2 245666663 4678899999999999987530 268999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 013008 437 EILCKTLPVLDS 448 (451)
Q Consensus 437 ~~l~~~l~~~~~ 448 (451)
++|++++++++.
T Consensus 364 ~~l~~~~~~~~~ 375 (382)
T 4hvk_A 364 EVLPGVIERLRS 375 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 142
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.92 E-value=8.5e-25 Score=213.35 Aligned_cols=296 Identities=16% Similarity=0.127 Sum_probs=192.9
Q ss_pred CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC-----CCeEEecCCHHHHHHHHH
Q 013008 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEAAI 172 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~eA~~~al 172 (451)
.+++||.++.. .++ .+|++.+++.+++.+... ..++.....++++.++++++ .+++++++||++|+..++
T Consensus 19 ~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~~~--~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 19 RDKTYLALNEN--PFP-FPEDLVDEVFRRLNSDAL--RIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp CCSEEESSCCC--SSC-CCHHHHHHHHHTCCGGGG--GSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred CcceECCCCCC--CCC-CCHHHHHHHHHHhhhhhh--hcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence 46899988865 455 689999999998733211 11222225567777777665 579999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEE-
Q 013008 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVF- 251 (451)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi- 251 (451)
+++ +++|++. |+||++.......+. .... .+...+.. + |+++| + ++++|+
T Consensus 94 ~~~--------------gd~Vl~~-p~y~~~~~~~~~~g~-~~~~---v~~~~~~~-~---d~~~l-----~-~~~~v~l 144 (335)
T 1uu1_A 94 LMF--------------DRSVFFP-PTYSCYRIFAKAVGA-KFLE---VPLTKDLR-I---PEVNV-----G-EGDVVFI 144 (335)
T ss_dssp HHS--------------SEEEECS-SSCHHHHHHHHHHTC-EEEE---CCCCTTSC-C---CCCCC-----C-TTEEEEE
T ss_pred HHh--------------CCcEEEC-CCcHHHHHHHHHcCC-eEEE---eccCCCCC-C---CHHHc-----C-CCCEEEE
Confidence 854 2579999 999998754433222 1111 11111110 1 33333 2 455665
Q ss_pred EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCccccccc-ccccCCCcceeeeccccc-CCccccccccc
Q 013008 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWA-HEHYGIFPDIMTLAKPLA-GGLPIGAALVT 329 (451)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~-~~~~~~~pdi~t~sK~lg-~G~~iG~v~~~ 329 (451)
++| ++++|. +++.+++++|+++| | ++|+||+|++|+. +.... .+..+....+.++||.+| +|+|+|+++++
T Consensus 145 ~~p-~nptG~-~~~~~~l~~l~~~~---~-~li~De~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 217 (335)
T 1uu1_A 145 PNP-NNPTGH-VFEREEIERILKTG---A-FVALDEAYYEFHG-ESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVAS 217 (335)
T ss_dssp ESS-CTTTCC-CCCHHHHHHHHHTT---C-EEEEECTTHHHHC-CCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEEC
T ss_pred eCC-CCCCCC-CCCHHHHHHHHHhC---C-EEEEECcchhhcc-hhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeC
Confidence 666 455565 45777777776666 8 8999999987643 22111 222333455678999998 78999999999
Q ss_pred HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc-ChHHHHH----------HHhCCCCcceecccceeEEEEecC-ChH
Q 013008 330 EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAFLAS----------KLARNPHVKDVRGLGLIIGIEFDV-SAT 397 (451)
Q Consensus 330 ~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~----------~~~~~~~~~~v~g~G~~~~~~~~~-~~~ 397 (451)
+++++.+... ..+++.|+++++++.++|+..+ -+++.++ .+++++ +...++.|.++++.+.. +..
T Consensus 218 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~ 294 (335)
T 1uu1_A 218 EKFIDAYNRV--RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG-YRITDSRGNFVFVFMEKEEKE 294 (335)
T ss_dssp HHHHHHHHHH--SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCCCSSEEEEECCTHHHH
T ss_pred HHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC-cEEcCCCCeEEEEECCCCCHH
Confidence 9998887643 2357889999999999887421 0111111 112222 22235567788887743 456
Q ss_pred HHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008 398 PVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKT 442 (451)
Q Consensus 398 ~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~ 442 (451)
++.+.|.++||.+.+. . +.+|+++. +++++++++++|+++
T Consensus 295 ~~~~~l~~~gi~v~~~-~-~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 295 RLLEHLRTKNVAVRSF-R-EGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp HHHHHHHHHTEEEEEE-T-TEEEEECC---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCEEEEEC-C-CeEEEEeC---CHHHHHHHHHHHHhh
Confidence 7889999999999984 3 68999764 468899999998754
No 143
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.92 E-value=6.4e-24 Score=211.89 Aligned_cols=277 Identities=16% Similarity=0.147 Sum_probs=194.2
Q ss_pred cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (451)
Q Consensus 132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (451)
+.+..+.++...+|+++|+++++.+.+++++||++|++.+++.+. .++++||+.++.||+.........
T Consensus 58 ~~y~r~~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~~-----------~~gd~Vi~~~~~y~~~~~~~~~~~ 126 (392)
T 3qhx_A 58 YEYARTGNPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAML-----------RPGDHVVIPDDAYGGTFRLIDKVF 126 (392)
T ss_dssp BCBTTTCCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHHHTG
T ss_pred ccccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEeCCCcchHHHHHHHHH
Confidence 334556677789999999999998899999999999999999664 158899999999987643321110
Q ss_pred CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (451)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg 291 (451)
......+.+++.+|+++|++++++ ++++|++|++++++|.+.+ +++|+++|++||+++|+||+|+.
T Consensus 127 ---------~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~ 192 (392)
T 3qhx_A 127 ---------TGWNVEYTPVALADLDAVRAAIRP-TTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFAS 192 (392)
T ss_dssp ---------GGGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTC
T ss_pred ---------HhcCcEEEEeCCCCHHHHHHhhCC-CCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCcc
Confidence 112234567788899999999975 7899999999999898776 99999999999999999999963
Q ss_pred CCcccccccccccCCCcceee--ecccccC-C-ccccccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--
Q 013008 292 LGRTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN-- 364 (451)
Q Consensus 292 ~gr~G~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-- 364 (451)
+ .. ....+..+|+++ ++|.+++ | +++|+++++ +++++.+....+..++..+|+.++++...++.+..
T Consensus 193 ~-~~-----~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~ 266 (392)
T 3qhx_A 193 P-AL-----QQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLVLRM 266 (392)
T ss_dssp T-TT-----CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHH
T ss_pred c-cc-----CChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHH
Confidence 2 22 222234577775 8899986 5 789999987 68888776544445677889998888877764321
Q ss_pred hHHHHH------HHhCCCCccee------------------cccceeEEEEecC---ChHHHHHHHHHCCceeeecC---
Q 013008 365 PAFLAS------KLARNPHVKDV------------------RGLGLIIGIEFDV---SATPVVDACRDSGLLVLTAG--- 414 (451)
Q Consensus 365 ~~~~~~------~~~~~~~~~~v------------------~g~G~~~~~~~~~---~~~~~~~~l~~~Gv~~~~~~--- 414 (451)
+...++ .++.+|.+..+ ++.|.++++++.. ....+...|...|+.+..++
T Consensus 267 ~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~s 346 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVES 346 (392)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSC
T ss_pred HHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCc
Confidence 111111 44555544333 5668899999953 23455555544454433221
Q ss_pred --------------------CCCEEEEeCCCCCCHHHHHHHHHHH
Q 013008 415 --------------------KGNVVRLVPPLIISEQELDQAVEIL 439 (451)
Q Consensus 415 --------------------~~~~iri~~~~~~t~e~i~~~l~~l 439 (451)
..+.+|+++....++++++.+.++|
T Consensus 347 l~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 347 LIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp EEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred eeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 1356899877765555555544443
No 144
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.92 E-value=5.3e-23 Score=203.67 Aligned_cols=311 Identities=14% Similarity=0.090 Sum_probs=209.1
Q ss_pred EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccC-CCC-----CHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHH
Q 013008 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSN-MYY-----SIPQIELAKRLVACSF--ADRVFFSNTGTEANEAA 171 (451)
Q Consensus 100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~-----~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~a 171 (451)
|+|+.++ |+.+|+|++++.+++.+...... .+. .....+++++++++++ .+++++++||++|+..+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHH
T ss_pred eeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHH
Confidence 6776664 46899999999999876311111 111 2346789999999888 45899999999999999
Q ss_pred HHHHHHHh-hhcCCCCCCCCceEEEEcCCccCChhhhhhc--cCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcC
Q 013008 172 IKFARKFQ-RHSNPDSKEPATEFVSFTNSFHGRTMGALAL--TSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQ 243 (451)
Q Consensus 172 l~~a~~~~-~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~ 243 (451)
++++..+. . +++.|++.+++|++.......+ .|. .+..++. .|+++|++.++
T Consensus 77 ~~~l~~~~~~--------~gd~Vl~~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~ 136 (382)
T 4eb5_A 77 IIGYAMRNAR--------KGKHILVSAVEHMSVINPAKFLQKQGF------------EVEYIPVGKYGEVDVSFIDQKLR 136 (382)
T ss_dssp HHHHHHHHGG--------GCCEEEEETTCCHHHHHHHHHHTTTTC------------EEEEECBCTTSCBCHHHHHHHCC
T ss_pred HHHHHhhccC--------CCCEEEECCCcchHHHHHHHHHHhCCc------------EEEEeccCCCCccCHHHHHHHhc
Confidence 99876321 2 5789999999998765443221 111 1222222 28999999997
Q ss_pred CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCc
Q 013008 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGL 321 (451)
Q Consensus 244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~ 321 (451)
+ ++++|+++.+++++|.+.+ +++|.++|++||++ |+||+|+ +|... .....+ .+|++ +++|.+|. .
T Consensus 137 ~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~~~~~~--~~di~~~s~sK~~g~-~ 204 (382)
T 4eb5_A 137 D-DTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE--VDVEKI--GADMLTISSNDIYGP-K 204 (382)
T ss_dssp T-TEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC--CCHHHH--TCSEEEEETGGGTCC-S
T ss_pred C-CCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc--cCcccc--CCCEEEeehHHhcCC-C
Confidence 5 5788888888888888776 89999999999999 9999996 54321 112222 35665 56797543 2
Q ss_pred ccccccccHHH-HhhccCC----CccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----------HHhCCCCcceeccc
Q 013008 322 PIGAALVTEKV-ASAINYG----DHGSTFAGSPLVCNAAIAVLDKISN--PAFLAS----------KLARNPHVKDVRGL 384 (451)
Q Consensus 322 ~iG~v~~~~~i-~~~~~~~----~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~----------~~~~~~~~~~v~g~ 384 (451)
++|+++++++. +..+... ......+.++..++++.++++.+.+ +...++ .++++|.+......
T Consensus 205 g~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 284 (382)
T 4eb5_A 205 GVGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHP 284 (382)
T ss_dssp SCEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCS
T ss_pred ceEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCc
Confidence 37888887763 2111111 0112234566677777777776532 111111 23345444323222
Q ss_pred ----ceeEEEEec-CChHHHHHHHHHCCceeeecCC----------------------CCEEEEeCCCCCCHHHHHHHHH
Q 013008 385 ----GLIIGIEFD-VSATPVVDACRDSGLLVLTAGK----------------------GNVVRLVPPLIISEQELDQAVE 437 (451)
Q Consensus 385 ----G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~----------------------~~~iri~~~~~~t~e~i~~~l~ 437 (451)
+.++++.+. .+..++.+.|.++||.+.++.. .+.+|++++..+++|+++++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~ 364 (382)
T 4eb5_A 285 EKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLE 364 (382)
T ss_dssp SSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHH
T ss_pred ccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHH
Confidence 556777774 4577899999999999987531 2689999888889999999999
Q ss_pred HHHHHHHHHhh
Q 013008 438 ILCKTLPVLDS 448 (451)
Q Consensus 438 ~l~~~l~~~~~ 448 (451)
+|++++++++.
T Consensus 365 ~l~~~~~~~~~ 375 (382)
T 4eb5_A 365 VLPGVIERLRS 375 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 145
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.92 E-value=1e-23 Score=209.76 Aligned_cols=314 Identities=13% Similarity=0.060 Sum_probs=208.8
Q ss_pred CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CCeEEecCCHHHHHHHHHHH
Q 013008 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--ADRVFFSNTGTEANEAAIKF 174 (451)
Q Consensus 97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~eA~~~al~~ 174 (451)
...|+|..+ .++.+|.+.+++.+++.. +. .........+++++++++++ .+++++++||++|+..++++
T Consensus 8 ~~~yl~~~~------~~~~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~ 78 (392)
T 2z9v_A 8 DPVITLTAG------PVNAYPEVLRGLGRTVLY--DY-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAAS 78 (392)
T ss_dssp CCSEECSSS------CCCCCHHHHHHTTSCCCC--TT-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHH
T ss_pred CcceeecCC------CcCCCHHHHHHHhccccc--cc-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHH
Confidence 346777543 246889999998876643 11 11112236789999999987 46999999999999999997
Q ss_pred HHHHhhhcCCCCCCCCceEEEEcCCccCChhhhh-hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC-CCCeEEEEE
Q 013008 175 ARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ-PGKTAAVFV 252 (451)
Q Consensus 175 a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~~~aavi~ 252 (451)
+. .++++|++.+++||+.....+ ...|..... .+...+. ..|+++|+++++ ..++++|++
T Consensus 79 ~~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~~~l~~~l~~~~~~~~v~~ 140 (392)
T 2z9v_A 79 LI-----------SPDDVVLNLASGVYGKGFGYWAKRYSPHLLE---IEVPYNE----AIDPQAVADMLKAHPEITVVSV 140 (392)
T ss_dssp HC-----------CTTCCEEEEESSHHHHHHHHHHHHHCSCEEE---EECCTTS----CCCHHHHHHHHHHCTTCCEEEE
T ss_pred hc-----------CCCCEEEEecCCcccHHHHHHHHHcCCceEE---eeCCCCC----CCCHHHHHHHHhcCCCCcEEEE
Confidence 63 158899999999988631111 111211100 1111110 138999999995 235778888
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcccccccccH
Q 013008 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTE 330 (451)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~ 330 (451)
+++++++|.+.+ +++|.++|++||+++|+||+|+ +|... .....+ .+|+++ ++|+++++.++|++++++
T Consensus 141 ~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~~~~s~sK~~~~~~g~G~l~~~~ 211 (392)
T 2z9v_A 141 CHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGMK--THPEDC--KADIYVTGPNKCLGAPPGLTMMGVSE 211 (392)
T ss_dssp ESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTBS--CCGGGG--TCSEEEECSSSTTCCCSCCEEEEECH
T ss_pred eccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCcc--cccccc--cceEEEecCcccccCCCceeEEEECH
Confidence 888888887766 8999999999999999999996 43221 122222 366664 579887656679999999
Q ss_pred HHHhhccCCC--------------------ccCCCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCC
Q 013008 331 KVASAINYGD--------------------HGSTFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPH 377 (451)
Q Consensus 331 ~i~~~~~~~~--------------------~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~ 377 (451)
++++.+.... .....+.++.+++++.++++.+.+. .+.++ .++++.
T Consensus 212 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g- 290 (392)
T 2z9v_A 212 RAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMG- 290 (392)
T ss_dssp HHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 9887664210 1112345677777777777765322 12222 122222
Q ss_pred cceec-c----cceeEEEEec--CChHHHHHHHHHC-CceeeecC---CCCEEEEeCCC-CCCHHHHHHHHHHHHHHHHH
Q 013008 378 VKDVR-G----LGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVPPL-IISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 378 ~~~v~-g----~G~~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~~~-~~t~e~i~~~l~~l~~~l~~ 445 (451)
+.... . .+.++++.+. .+..++.+.|.++ ||.+.++. ..+.+|+++.. .++++++++++++|++++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 291 LSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp CCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred CeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence 22122 1 4667777773 3577899999997 99998763 23789998543 78999999999999999987
Q ss_pred Hh
Q 013008 446 LD 447 (451)
Q Consensus 446 ~~ 447 (451)
++
T Consensus 371 ~~ 372 (392)
T 2z9v_A 371 AG 372 (392)
T ss_dssp TT
T ss_pred cC
Confidence 64
No 146
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.92 E-value=9.6e-25 Score=222.67 Aligned_cols=332 Identities=13% Similarity=0.081 Sum_probs=197.8
Q ss_pred CCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHH
Q 013008 97 GREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFAR 176 (451)
Q Consensus 97 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~ 176 (451)
|+.||||.++.++ |+|.+++.+++..... .+.......+|+++++++++.++++|++||++|++.|+++++
T Consensus 40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~~--~y~~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~ 110 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGDE--AYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLI 110 (467)
T ss_dssp GGCSEECSCCSSC-------SCCCHHHHHHTTSCCC--CSSSCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHH
T ss_pred CCeeEecccCCCc-------HHHHHHHHHHhccCcc--eeccCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHh
Confidence 6789999887663 7888998888754221 223355578999999999999999999999999999999987
Q ss_pred HHh-hhcCCCCCCCC-ceEEEEcCCccCChhhhhhc-cCCCCcCC-CCcCCCCCeeEeeC---CCHHHHHHhcCC---CC
Q 013008 177 KFQ-RHSNPDSKEPA-TEFVSFTNSFHGRTMGALAL-TSKEHYRS-PFEPVMPGVNFVEY---GNIEATRKLIQP---GK 246 (451)
Q Consensus 177 ~~~-~~~~~~~~~~~-~~ii~~~~~yhg~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~---~d~~~le~~l~~---~~ 246 (451)
..+ ...+. ++ |+||+. .||+.+...... .+...... ...+...+ ...++ .|+++|+++++. .+
T Consensus 111 ~~~~~~~G~----~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~Le~~i~~~~~~~ 183 (467)
T 2oqx_A 111 KKREQEKGL----DRSKMVAFS--NYFFDTTQGHSQINGCTVRNVYIKEAFDTG-VRYDFKGNFDLEGLERGIEEVGPNN 183 (467)
T ss_dssp HHHHHHHCC----CTTTCEEEE--SSCCHHHHHHHHHTTCEEEECBCTTTTCTT-SCCTTTTCBCHHHHHHHHHHHCGGG
T ss_pred ccccccCCC----CccceEEec--ccccccchhhhhccCcceeeccccccccCC-CCCCccCCcCHHHHHHHHHhcCCCc
Confidence 542 00010 12 676665 578654332221 11111000 00000001 00111 289999999973 36
Q ss_pred eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC----------CCcccc---cccccccCCCcce--e
Q 013008 247 TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG----------LGRTGY---LWAHEHYGIFPDI--M 311 (451)
Q Consensus 247 ~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg----------~gr~G~---~~~~~~~~~~pdi--~ 311 (451)
+++|+++++++++|+.+++.+++++|+++|++||++||+|+++.. .+..|. .+..+.+ ..+|+ .
T Consensus 184 ~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~ 262 (467)
T 2oqx_A 184 VPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETY-KYADMLAM 262 (467)
T ss_dssp CCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHG-GGCSEEEE
T ss_pred eeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhh-ccCCeEEE
Confidence 899999998887655688999999999999999999999966532 123332 1110000 11343 5
Q ss_pred eecccccCCccc-ccccccHH-HHh---hccCC----CccCCCCCcHH-HHHHHHHHHHHhcChHHHHH----------H
Q 013008 312 TLAKPLAGGLPI-GAALVTEK-VAS---AINYG----DHGSTFAGSPL-VCNAAIAVLDKISNPAFLAS----------K 371 (451)
Q Consensus 312 t~sK~lg~G~~i-G~v~~~~~-i~~---~~~~~----~~~~t~~~~~~-~~aaa~aal~~~~~~~~~~~----------~ 371 (451)
+++|+++ .|+ |+++++++ +++ .+... ....++++.+. ++++....++...+++.+++ .
T Consensus 263 s~sK~~g--~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~ 340 (467)
T 2oqx_A 263 SAKKDAM--VPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDG 340 (467)
T ss_dssp ESSSTTC--CSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ecccccC--CCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH
Confidence 6788885 354 56666655 333 33211 11122333222 22222223332222222211 2
Q ss_pred HhCCCCcceecccceeEEEEec-----CC-----hHHHHHHH-HHCCceeeecCC----------------CCEEEEeCC
Q 013008 372 LARNPHVKDVRGLGLIIGIEFD-----VS-----ATPVVDAC-RDSGLLVLTAGK----------------GNVVRLVPP 424 (451)
Q Consensus 372 ~~~~~~~~~v~g~G~~~~~~~~-----~~-----~~~~~~~l-~~~Gv~~~~~~~----------------~~~iri~~~ 424 (451)
+++.. +..+...|.++++.+. .+ ...+++.| .++||.+.|++. .+.+|++++
T Consensus 341 L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~ 419 (467)
T 2oqx_A 341 LEEIG-VVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIP 419 (467)
T ss_dssp HHHTT-CCEEEECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCC
T ss_pred HHHCC-CeeecCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEec
Confidence 22222 2112334667777762 12 34468888 789999987431 168999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHhh
Q 013008 425 LI-ISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 425 ~~-~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
.. +|+++|++++++|++++++++.
T Consensus 420 ~~~~t~e~i~~~~~~l~~~l~~~~~ 444 (467)
T 2oqx_A 420 RATYTQTHMDFIIEAFKHVKENAAN 444 (467)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHSGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 88 9999999999999999987653
No 147
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.92 E-value=2.3e-23 Score=203.85 Aligned_cols=317 Identities=18% Similarity=0.185 Sum_probs=207.5
Q ss_pred CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHH
Q 013008 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK 177 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~ 177 (451)
+++|||.++... ..+|++++++.+.... ...+++.+...+|+++++++++.+.+++++||++|+..+++++.
T Consensus 3 ~~~i~~~~~~~~----~p~~~~~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~- 74 (347)
T 1jg8_A 3 HMMIDLRSDTVT----KPTEEMRKAMAQAEVG---DDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHT- 74 (347)
T ss_dssp --CEECSCGGGC----CCCHHHHHHHHTCCCC---CGGGTCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHC-
T ss_pred ceEEEeccccCC----CCCHHHHHHHhcCCCC---CcccCCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhc-
Confidence 467898887652 2678888888654321 11223455678999999999998899999999999999987654
Q ss_pred HhhhcCCCCCCCCceEEEEcCCccCChh-h-hhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----CCeEEE
Q 013008 178 FQRHSNPDSKEPATEFVSFTNSFHGRTM-G-ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAV 250 (451)
Q Consensus 178 ~~~~~~~~~~~~~~~ii~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~aav 250 (451)
.++|+|++.+|+|..... . .....+..... . ...+.. -|+++|++++++ .++++|
T Consensus 75 ----------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~---v-~~~~~~----~d~~~l~~~i~~~~~~~~~~~~v 136 (347)
T 1jg8_A 75 ----------QRGDEVILEADSHIFWYEVGAMAVLSGVMPHP---V-PGKNGA----MDPDDVRKAIRPRNIHFPRTSLI 136 (347)
T ss_dssp ----------CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEE---E-CEETTE----ECHHHHHHHSCCSCTTSCCEEEE
T ss_pred ----------CCCCEEEEcCcchhhhccccchhhccCeEEEE---e-cCCCCc----cCHHHHHHHhccccccccCceEE
Confidence 168999999998754221 1 11112211100 0 000000 189999999974 258889
Q ss_pred EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC---cccccccccccCCCcc--eeeecccccCCcccc-
Q 013008 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG---RTGYLWAHEHYGIFPD--IMTLAKPLAGGLPIG- 324 (451)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g---r~G~~~~~~~~~~~pd--i~t~sK~lg~G~~iG- 324 (451)
+++++++++|+.+.+.+++++|.++|++||+++|+||+|. ++ ..+. .........| ++++||++++ ++|
T Consensus 137 ~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~--~~~~~~~~~d~~~~s~sK~l~~--~~G~ 211 (347)
T 1jg8_A 137 AIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGV--PVKEYAGYADSVMFCLSKGLCA--PVGS 211 (347)
T ss_dssp EEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCC--CHHHHHHTCSEEEEESSSTTCC--SSCE
T ss_pred EEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCC--ChHHhcccccEEEEecccccCC--CceE
Confidence 9988887773356788999999999999999999999874 21 1121 1111111223 3468999975 467
Q ss_pred cccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcCh--HHHHH------HHhCCCC-cceecccceeEEEEec
Q 013008 325 AALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNP--AFLAS------KLARNPH-VKDVRGLGLIIGIEFD 393 (451)
Q Consensus 325 ~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~~--~~~~~------~~~~~~~-~~~v~g~G~~~~~~~~ 393 (451)
++++++++++.+... ..++++..+++.++++.++|+...+. ...++ .+++++. +......|.++++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 291 (347)
T 1jg8_A 212 VVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTD 291 (347)
T ss_dssp EEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECT
T ss_pred EEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCCCcceEEEEEcc
Confidence 456788887765321 12334445667777777788754221 11111 2222221 1112345777888774
Q ss_pred ---CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 394 ---VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 394 ---~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
.+..++.+.|.++||.+.+.+. +.+|++++..+++|++++++++|+++++++
T Consensus 292 ~~~~~~~~~~~~l~~~gi~v~~~~~-~~iRl~~~~~~~~e~i~~~~~~l~~~l~~~ 346 (347)
T 1jg8_A 292 NLKVNAHGFIEALRNSGVLANAVSD-TEIRLVTHKDVSRNDIEEALNIFEKLFRKF 346 (347)
T ss_dssp TSSSCHHHHHHHHHHHTEECEEEET-TEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHCCCEEecCCC-CeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3477899999999999998765 789999988899999999999999988753
No 148
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.92 E-value=1.4e-24 Score=221.49 Aligned_cols=324 Identities=16% Similarity=0.140 Sum_probs=215.3
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccc----cCC---CCCHHHHHHHHHHhhccC--CCeEEecCCHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHV----SNM---YYSIPQIELAKRLVACSF--ADRVFFSNTGTE 166 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~----~~~---~~~~~~~~l~~~l~~~~~--~e~v~~~~sG~e 166 (451)
++..|+|.. .+|+.++.+.+++.++++.+... ... .......+++++++++++ .++|++++|+++
T Consensus 66 ~~~iyld~~------~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~ 139 (465)
T 3e9k_A 66 ENAIYFLGN------SLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTV 139 (465)
T ss_dssp CBCEECBTT------TSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHH
T ss_pred CCeEEecCC------ccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHH
Confidence 345677633 37777888888888877653211 111 111235678888888887 569999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh---ccCCCCcC--CCCcCCCCCeeEeeCCCHHHHHHh
Q 013008 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEHYR--SPFEPVMPGVNFVEYGNIEATRKL 241 (451)
Q Consensus 167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~ 241 (451)
++..+++.+.... +++++||+.+++||+....... ..|..... ....+...+.. -|+++|+++
T Consensus 140 al~~~~~~~~~~~--------~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~----~d~~~l~~~ 207 (465)
T 3e9k_A 140 NLHLLMLSFFKPT--------PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEET----LRIEDILEV 207 (465)
T ss_dssp HHHHHHHHHCCCC--------SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSS----CCHHHHHHH
T ss_pred HHHHHHHHhcccc--------CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCc----cCHHHHHHH
Confidence 9999998664211 2467799999999985543221 12211100 00001111111 179999999
Q ss_pred cC--CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccc
Q 013008 242 IQ--PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPL 317 (451)
Q Consensus 242 l~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~l 317 (451)
++ .+++++|+++++++++|.+.+ +++|.++|++||+++|+|++|+ .|... .....++ .|++ +++|.+
T Consensus 208 i~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~~--~~~~~~~--~D~~~~s~~K~l 278 (465)
T 3e9k_A 208 IEKEGDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNVE--LYLHDWG--VDFACWCSYKYL 278 (465)
T ss_dssp HHHHGGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHHT--CCEEEECSSSTT
T ss_pred HHhcCCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCcC--CchhhcC--CCEEEECccccc
Confidence 96 247899999999999998877 8999999999999999999996 33221 1222333 5555 566999
Q ss_pred cCC-cccccccccHHHHhhccCCCcc---C------------C----------CCCcHHHHHHHHHHHHHhcC---hHHH
Q 013008 318 AGG-LPIGAALVTEKVASAINYGDHG---S------------T----------FAGSPLVCNAAIAVLDKISN---PAFL 368 (451)
Q Consensus 318 g~G-~~iG~v~~~~~i~~~~~~~~~~---~------------t----------~~~~~~~~aaa~aal~~~~~---~~~~ 368 (451)
++| .++|++++++++.+.+.+...+ + + -+.+++++++..++++.+.+ +.+.
T Consensus 279 ~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~ 358 (465)
T 3e9k_A 279 NAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALR 358 (465)
T ss_dssp CCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHH
Confidence 644 5789999999887766532111 1 0 14567788888888877643 2222
Q ss_pred HH----------HHhCC----------CCcceec-----ccceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeC
Q 013008 369 AS----------KLARN----------PHVKDVR-----GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVP 423 (451)
Q Consensus 369 ~~----------~~~~~----------~~~~~v~-----g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~ 423 (451)
++ .++.+ +.+..+. ..|.++++.+.....++.+.|.++||.+..... +.+|+++
T Consensus 359 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~-~~iRis~ 437 (465)
T 3e9k_A 359 KKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPNKDVFQELEKRGVVCDKRNP-NGIRVAP 437 (465)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCTTCCHHHHHHTTTEECEEETT-TEEEEBC
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCCHHHHHHHHHHCCEEEecCCC-CEEEEeC
Confidence 22 22221 3332222 248888888864566799999999999886554 8899998
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 424 -PLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 424 -~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
++.+|++|+++++++|++++++..
T Consensus 438 ~~~~~t~edi~~~~~~l~~~l~~~~ 462 (465)
T 3e9k_A 438 VPLYNSFHDVYKFTNLLTSILDSAE 462 (465)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHTC--
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999987644
No 149
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.92 E-value=2.3e-23 Score=208.68 Aligned_cols=279 Identities=14% Similarity=0.097 Sum_probs=193.4
Q ss_pred CCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC
Q 013008 136 MYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH 215 (451)
Q Consensus 136 ~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (451)
....+...+|+++++++++.+.+++++||++|+..+++.+. .++++|++.+|.|++.........
T Consensus 58 ~~~~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l~-----------~~gd~Vl~~~~~y~~~~~~~~~~~---- 122 (404)
T 1e5e_A 58 RLGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTIL-----------KAGDHLISDECLYGCTHALFEHAL---- 122 (404)
T ss_dssp TTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESCCCHHHHHHHHTHH----
T ss_pred CCcChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHh-----------CCCCEEEEeCCCchhHHHHHHHHH----
Confidence 34456678999999999998899999999999999998653 168899999999987643110000
Q ss_pred cCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHH-hCCEEEEeccccCCCc
Q 013008 216 YRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD-AGALLVFDEVQCGLGR 294 (451)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~-~g~llI~DEv~tg~gr 294 (451)
......+..++.+|+++|++.+++ ++++|+++++++++|.+.+ +++|.++|++ ||+++|+||+|+.+..
T Consensus 123 -----~~~g~~~~~v~~~d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~ 192 (404)
T 1e5e_A 123 -----TKFGIQVDFINTAIPGEVKKHMKP-NTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMI 192 (404)
T ss_dssp -----HHTTCEEEEECTTSTTHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTT
T ss_pred -----HHcCCEEEEECCCCHHHHHHhcCC-CCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhh
Confidence 011133556677799999999975 6888999988888887765 9999999999 9999999999987633
Q ss_pred ccccccccccCCCcceeeecccccC-Cccc-ccccccHHHHh-hccCCCccC-CCCCcHHHHHHHHHHHHHhcC--hHHH
Q 013008 295 TGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTEKVAS-AINYGDHGS-TFAGSPLVCNAAIAVLDKISN--PAFL 368 (451)
Q Consensus 295 ~G~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~~i~~-~~~~~~~~~-t~~~~~~~~aaa~aal~~~~~--~~~~ 368 (451)
. .. . .++....+.++||++++ |+++ |++++++++++ .+....... +.+.+++.++++.++++.+.. +...
T Consensus 193 ~-~~--~-~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 268 (404)
T 1e5e_A 193 T-NP--V-DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKAES 268 (404)
T ss_dssp C-CG--G-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTHHHHHHHHH
T ss_pred C-Cc--c-ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHHHHHHHHHH
Confidence 2 22 1 23433334478999985 7897 99999998887 776544333 456789999988888864310 0111
Q ss_pred H------HHHhCCCCc--------------ce----ecccceeEEEEecCChHHHHHHHHHCCceeeec--C--------
Q 013008 369 A------SKLARNPHV--------------KD----VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA--G-------- 414 (451)
Q Consensus 369 ~------~~~~~~~~~--------------~~----v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--~-------- 414 (451)
+ +.+++.+.+ .. .++.|.++.|++........+.+.+.||++... |
T Consensus 269 ~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~ 348 (404)
T 1e5e_A 269 ENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQH 348 (404)
T ss_dssp HHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSCEEEC
T ss_pred HHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHHHHHHHHhCCCceeccCCCCcceeeec
Confidence 1 133333311 11 134488888887532234555555678854321 1
Q ss_pred ----------------C---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 415 ----------------K---GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 415 ----------------~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
. .+.+|+++.. |++++++++|+++++.+.
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~~~~ 396 (404)
T 1e5e_A 349 PASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLDALL 396 (404)
T ss_dssp GGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHHHHH
Confidence 0 2689998776 889999999999988754
No 150
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.92 E-value=9.9e-24 Score=210.91 Aligned_cols=309 Identities=15% Similarity=0.091 Sum_probs=210.0
Q ss_pred CEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHH
Q 013008 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARK 177 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~ 177 (451)
++||||.++... ++ |++.+++.++++... +.......+++++++++++.+.+++++||++|+..+++++.
T Consensus 30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~----y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~- 99 (399)
T 2oga_A 30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGR----YLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLG- 99 (399)
T ss_dssp BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTC----CSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTT-
T ss_pred CcccccCcCCCC--CC---HHHHHHHHHHHhcCC----CCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhC-
Confidence 678999887763 32 899999999887632 12345688999999999998789999999999999998762
Q ss_pred HhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccC
Q 013008 178 FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG 257 (451)
Q Consensus 178 ~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~ 257 (451)
. .++++|++.+++||+..... ...+..... .+..++. ...|+++|++++++ ++++|+++ +
T Consensus 100 -~--------~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~---~~~~~~~---~~~d~~~l~~~i~~-~~~~v~~~---n 159 (399)
T 2oga_A 100 -I--------GPGDEVIVPSHTYIASWLAV-SATGATPVP---VEPHEDH---PTLDPLLVEKAITP-RTRALLPV---H 159 (399)
T ss_dssp -C--------CTTCEEEEESSSCTHHHHHH-HHTTCEEEE---ECBCSSS---SSBCHHHHHHHCCT-TEEEECCB---C
T ss_pred -C--------CCcCEEEECCCccHHHHHHH-HHCCCEEEE---EecCCCC---CCcCHHHHHHhcCC-CCeEEEEe---C
Confidence 1 15789999999999865433 322221111 1111100 01289999999975 57777753 3
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCC-cccccccccccCCCcceeee----cccccC-Cccccccccc-H
Q 013008 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLG-RTGYLWAHEHYGIFPDIMTL----AKPLAG-GLPIGAALVT-E 330 (451)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g-r~G~~~~~~~~~~~pdi~t~----sK~lg~-G~~iG~v~~~-~ 330 (451)
++|.+.+ +++|.++|++||+++|+||+|+.+. ..+. .++..+|++++ ||.+++ | ++|+++++ +
T Consensus 160 ~tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-----~~~~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~ 229 (399)
T 2oga_A 160 LYGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRGR-----RIGAGSSVAAFSFYPGKNLGCFG-DGGAVVTGDP 229 (399)
T ss_dssp GGGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETTE-----ETTCTTCEEEEECCTTSSSCCSS-CCEEEEESCH
T ss_pred CcCCccC----HHHHHHHHHHcCCEEEEECcccccCccCCe-----ecccccCEEEEeCCCCccCCcCC-ceEEEEeCCH
Confidence 3565555 9999999999999999999996331 1222 12333688876 499987 8 89999886 7
Q ss_pred HHHhhccCCC-c-----------cCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCccee--cccce
Q 013008 331 KVASAINYGD-H-----------GSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDV--RGLGL 386 (451)
Q Consensus 331 ~i~~~~~~~~-~-----------~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v--~g~G~ 386 (451)
++++.+.... . +.++..+++.++++.++++.++. +.++ .++.++.+... ...+.
T Consensus 230 ~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~ 307 (399)
T 2oga_A 230 ELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDS--WNGRRSALAAEYLSGLAGLPGIGLPVTAPDTD 307 (399)
T ss_dssp HHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEE
T ss_pred HHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccCCCccccCCCCCCc
Confidence 8877654211 1 23345689999998888875532 1111 23334332211 11222
Q ss_pred eE--EEEec-CChHHHHHHHHHCCceeeecCC--------------------------CCEEEEeCCCCCCHHHHHHHHH
Q 013008 387 II--GIEFD-VSATPVVDACRDSGLLVLTAGK--------------------------GNVVRLVPPLIISEQELDQAVE 437 (451)
Q Consensus 387 ~~--~~~~~-~~~~~~~~~l~~~Gv~~~~~~~--------------------------~~~iri~~~~~~t~e~i~~~l~ 437 (451)
.+ .+.+. .+..++.+.|.++||.+.+... .+.+|++++..+|+||++++++
T Consensus 308 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~ 387 (399)
T 2oga_A 308 PVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVID 387 (399)
T ss_dssp CCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHH
T ss_pred ceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHH
Confidence 22 23332 4577899999999999876421 1469999999999999999999
Q ss_pred HHHHHHHHHhh
Q 013008 438 ILCKTLPVLDS 448 (451)
Q Consensus 438 ~l~~~l~~~~~ 448 (451)
+|+++++++++
T Consensus 388 ~l~~~~~~l~~ 398 (399)
T 2oga_A 388 AVREWAERVDQ 398 (399)
T ss_dssp HHHHHHHSCC-
T ss_pred HHHHHHHHhcc
Confidence 99999887653
No 151
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.92 E-value=1.3e-23 Score=213.70 Aligned_cols=326 Identities=14% Similarity=0.108 Sum_probs=204.6
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA 175 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a 175 (451)
.|+.|+||.++.++.. -.+++.+++. .... .+.......+|+++|+++++.+++++++||++|++.+++++
T Consensus 40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~~~--~y~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l 110 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MGDE--AYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLA 110 (456)
T ss_dssp GGGCSEECSCSSSCCC---CCHHHHHHHT----TCCC--CSSSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHH
T ss_pred cccceeeeccccCCcc---CCHHHHHHhh----cchh--hcccChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHh
Confidence 4678999988766432 2466666654 2111 22345568899999999999889999999999999999876
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC-CCCeeEee--CC-CHHHHHHhcCCC---CeE
Q 013008 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MPGVNFVE--YG-NIEATRKLIQPG---KTA 248 (451)
Q Consensus 176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~-d~~~le~~l~~~---~~a 248 (451)
. + ++| |+.+++||+.+...+...|......+..+. .+.. ..+ ++ |+++|++++++. .++
T Consensus 111 ~---~--------~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~-~~~~~~~~d~~~l~~~i~~~t~~~~~ 176 (456)
T 2ez2_A 111 I---K--------PGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGL-NIAFKGDIDLKKLQKLIDEKGAENIA 176 (456)
T ss_dssp C---C--------TTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTC-CCSCTTCBCHHHHHHHHHHHCGGGEE
T ss_pred C---C--------CCC--EeccccccchhHHHHHHcCCEEEEecccccccccc-cccccCCCCHHHHHHHHHhcccccee
Confidence 4 1 466 888999988766555554432211111100 0000 011 12 899999998632 357
Q ss_pred EEEEc-cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC----------CCccccccc--ccccCCCcceeeec-
Q 013008 249 AVFVE-PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG----------LGRTGYLWA--HEHYGIFPDIMTLA- 314 (451)
Q Consensus 249 avi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg----------~gr~G~~~~--~~~~~~~pdi~t~s- 314 (451)
+|+++ |+|+++| .+++.+++++|+++|++||++||+||+|+. +.+.|.... .+..+..+|++++|
T Consensus 177 ~v~l~~p~n~ptG-~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~ 255 (456)
T 2ez2_A 177 YICLAVTVNLAGG-QPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSG 255 (456)
T ss_dssp EEEEESSBTTTTS-BCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEET
T ss_pred EEEEeccCCCCCC-ccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeC
Confidence 88888 5554677 467999999999999999999999999974 345554211 01123347888774
Q ss_pred ccccC-Ccccccccc-cHHHHhhccCCC---c-cCCCC-CcHHHHHH-HHHHHHHhcChHHHHH-------H---HhCCC
Q 013008 315 KPLAG-GLPIGAALV-TEKVASAINYGD---H-GSTFA-GSPLVCNA-AIAVLDKISNPAFLAS-------K---LARNP 376 (451)
Q Consensus 315 K~lg~-G~~iG~v~~-~~~i~~~~~~~~---~-~~t~~-~~~~~~aa-a~aal~~~~~~~~~~~-------~---~~~~~ 376 (451)
|.+++ | ++|++++ ++++++.+.... + ..++. .++..+++ +.+.++.++ +++.++ + +++.
T Consensus 256 kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~- 332 (456)
T 2ez2_A 256 KKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA- 332 (456)
T ss_dssp TTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred cccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC-
Confidence 55543 4 5788888 688877654211 1 11222 24334344 555555543 333333 1 1221
Q ss_pred Cccee-cccceeEEEEec-----CChHHH-----HHHH-HHCCceeeecCC----------------CCEEEEeCCCC-C
Q 013008 377 HVKDV-RGLGLIIGIEFD-----VSATPV-----VDAC-RDSGLLVLTAGK----------------GNVVRLVPPLI-I 427 (451)
Q Consensus 377 ~~~~v-~g~G~~~~~~~~-----~~~~~~-----~~~l-~~~Gv~~~~~~~----------------~~~iri~~~~~-~ 427 (451)
.+..+ ...|.++++.+. .+..++ ++.| .++||.+.+.+. .+.+|++++.. +
T Consensus 333 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~ 412 (456)
T 2ez2_A 333 GVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVY 412 (456)
T ss_dssp TCCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTC
T ss_pred CCccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCC
Confidence 12112 234677777652 123344 7777 578998654221 26799999886 8
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 013008 428 SEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 428 t~e~i~~~l~~l~~~l~~~~~ 448 (451)
+++++++++++|++++++...
T Consensus 413 t~e~i~~~~~~l~~~l~~~~~ 433 (456)
T 2ez2_A 413 TYAHMDVVADGIIKLYQHKED 433 (456)
T ss_dssp CHHHHHHHHHHHHHHHHTGGG
T ss_pred CHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987653
No 152
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.92 E-value=5.5e-24 Score=211.84 Aligned_cols=317 Identities=12% Similarity=0.065 Sum_probs=206.1
Q ss_pred cCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CC-eEEecCCHHHHHHHH
Q 013008 95 AEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAA 171 (451)
Q Consensus 95 ~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e-~v~~~~sG~eA~~~a 171 (451)
.+|+.|.|..+. + ..+|++.+++.+++.. + ..........+++++++++++ .+ ++++++||++|+..+
T Consensus 16 ~~~~~~~~~~g~-----~-~~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~ 86 (393)
T 2huf_A 16 VTPNKLLMGPGP-----S-NAPQRVLDAMSRPILG--H-LHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT 86 (393)
T ss_dssp CCCCCEECSSSC-----C-CCCHHHHHHTTSCCCC--T-TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred CCCCeEEecCCC-----C-CCCHHHHHHHHhhhcc--C-CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence 356777664442 2 2689999988776543 1 111122347889999999887 33 799999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhh-hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEE
Q 013008 172 IKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAV 250 (451)
Q Consensus 172 l~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aav 250 (451)
++++. .++++|++.+++||+...... ...|.... +.+...+. ..|+++|++.+++.++++|
T Consensus 87 ~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~---~v~~~~~~----~~d~~~l~~~i~~~~~~~v 148 (393)
T 2huf_A 87 LCNLL-----------EDGDVILIGHTGHWGDRSADMATRYGADVR---VVKSKVGQ----SLSLDEIRDALLIHKPSVL 148 (393)
T ss_dssp HHHHC-----------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE---EEECCTTC----CCCHHHHHHHHHHHCCSEE
T ss_pred HHHHh-----------CCCCEEEEECCCcchHHHHHHHHHcCCeeE---EEeCCCCC----CCCHHHHHHHHhccCCcEE
Confidence 99764 158899999999998431111 11111110 01111110 1389999999864246777
Q ss_pred EEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcccccccc
Q 013008 251 FVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALV 328 (451)
Q Consensus 251 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~ 328 (451)
+++++++++|.+.+ +++|.++|++||+++|+||+++ +|.. ...... ..+|+++ ++|+++++.++|++++
T Consensus 149 ~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~sK~l~g~~G~G~~~~ 219 (393)
T 2huf_A 149 FLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMDR--WEIDAMYTGSQKVLGAPPGITPVSF 219 (393)
T ss_dssp EEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTTT--TTCSEEECCSSSTTCCCSSCEEEEE
T ss_pred EEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchhh--cCccEEEECCCcccccCCCeEEEEE
Confidence 88888888887766 8999999999999999999985 5432 111222 2467765 5699875445599999
Q ss_pred cHHHHhhccCCC----------------------ccCCC-CCcHHHHHHHHHHHHHhcCh---HHHHH----------HH
Q 013008 329 TEKVASAINYGD----------------------HGSTF-AGSPLVCNAAIAVLDKISNP---AFLAS----------KL 372 (451)
Q Consensus 329 ~~~i~~~~~~~~----------------------~~~t~-~~~~~~~aaa~aal~~~~~~---~~~~~----------~~ 372 (451)
++++++.+.... ...++ +.+..+++++.++++.+.+. ...++ .+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 299 (393)
T 2huf_A 220 SHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGL 299 (393)
T ss_dssp CHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 999888765320 01122 34566666666777765321 12221 12
Q ss_pred hCCCCcceecc----cceeEEEEec--CChHHHHHHHHHC-CceeeecC---CCCEEEEeC-CCCCCHHHHHHHHHHHHH
Q 013008 373 ARNPHVKDVRG----LGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCK 441 (451)
Q Consensus 373 ~~~~~~~~v~g----~G~~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~-~~~~t~e~i~~~l~~l~~ 441 (451)
+++. +..+.. .+.++++.+. .+..++.+.|+++ ||.+.++. ..+.+|+++ ++..++|++++++++|++
T Consensus 300 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~ 378 (393)
T 2huf_A 300 QDAG-FELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQE 378 (393)
T ss_dssp HHTT-CCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred HHcC-CeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHH
Confidence 2222 211211 2446777763 3577899999875 99998753 237899998 656789999999999999
Q ss_pred HHHHHhh
Q 013008 442 TLPVLDS 448 (451)
Q Consensus 442 ~l~~~~~ 448 (451)
++++++.
T Consensus 379 ~~~~~~~ 385 (393)
T 2huf_A 379 AVAAVKP 385 (393)
T ss_dssp HHHHHCC
T ss_pred HHHHcCC
Confidence 9988754
No 153
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.92 E-value=6.8e-23 Score=205.83 Aligned_cols=296 Identities=22% Similarity=0.159 Sum_probs=201.3
Q ss_pred cCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 013008 111 ALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (451)
Q Consensus 111 ~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~ 190 (451)
.+++.+|+..+++.. ....+.+.....+...+++++++++++.+.+++++||++|+..+++.+. .++
T Consensus 29 ~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l~-----------~~g 95 (412)
T 2cb1_A 29 AYGFKTLEEGQERFA--TGEGYVYARQKDPTAKALEERLKALEGALEAVVLASGQAATFAALLALL-----------RPG 95 (412)
T ss_dssp BCCCSSHHHHHHHHH--HCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-----------CTT
T ss_pred eeecCChHHHHHHhc--cccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------CCC
Confidence 466777765555443 2333434444567789999999999998899999999999999999653 158
Q ss_pred ceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHH
Q 013008 191 TEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (451)
Q Consensus 191 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~ 270 (451)
++|++.++.|++......... ......+.+++. |+++|++++++ ++++|+++++++++|.+.+ ++
T Consensus 96 d~vi~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~-~~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~----l~ 160 (412)
T 2cb1_A 96 DEVVAAKGLFGQTIGLFGQVL---------SLMGVTVRYVDP-EPEAVREALSA-KTRAVFVETVANPALLVPD----LE 160 (412)
T ss_dssp CEEEEETTCCHHHHHHHHHTT---------TTTTCEEEEECS-SHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HH
T ss_pred CEEEEeCCCchhHHHHHHHHH---------HHcCCEEEEECC-CHHHHHHHhcc-CCeEEEEeCCCCCCccccc----HH
Confidence 899999999976443221100 011123445554 59999999975 6889999999888888776 99
Q ss_pred HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccC-CcccccccccH-----------------
Q 013008 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAG-GLPIGAALVTE----------------- 330 (451)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~-G~~iG~v~~~~----------------- 330 (451)
+|+++|++||+++|+||+|++++.... ..+..+|+++ ++|.+++ |.++|++++.+
T Consensus 161 ~i~~l~~~~~~~li~D~~~~~~~~~~~-----~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 235 (412)
T 2cb1_A 161 ALATLAEEAGVALVVDNTFGAAGALCR-----PLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLK 235 (412)
T ss_dssp HHHHHHHHHTCEEEEECGGGTTTTSCC-----GGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC---
T ss_pred HHHHHHHHcCCEEEEECCCccccccCC-----ccccCCeEEEECCcccccCCCCcEEEEEEecccccccccccccccccc
Confidence 999999999999999999986532221 1123467765 8899975 68888877543
Q ss_pred -----------HHHhhccCCC-ccCCCCCcHHHHHHHHHHHHHhcCh--------HHHHHHHhCCCCccee---------
Q 013008 331 -----------KVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNP--------AFLASKLARNPHVKDV--------- 381 (451)
Q Consensus 331 -----------~i~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~~--------~~~~~~~~~~~~~~~v--------- 381 (451)
++.+.++... ....+..+|..++.+...++.+... ..+.+.+..++.+..+
T Consensus 236 g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p 315 (412)
T 2cb1_A 236 GQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDP 315 (412)
T ss_dssp ----HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCT
T ss_pred ccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCc
Confidence 3333333211 1122355788887777766544210 1111134445544433
Q ss_pred ---------cccceeEEEEecCChHHHHHHHHHCCceeeecC-----------------------------CCCEEEEeC
Q 013008 382 ---------RGLGLIIGIEFDVSATPVVDACRDSGLLVLTAG-----------------------------KGNVVRLVP 423 (451)
Q Consensus 382 ---------~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------------~~~~iri~~ 423 (451)
++.|.++.|.+ .+...+.+.|.+.|+++ .+. ..+.+|+++
T Consensus 316 ~~~~~~~~~~~~~~iv~~~~-~~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~ 393 (412)
T 2cb1_A 316 AHRNARKYLASGGPILTLDL-GDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSV 393 (412)
T ss_dssp THHHHHHHCSSSCSEEEEEC-SSHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEEC
T ss_pred cHHHHHHhCCCCceEEEEEe-CCHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEe
Confidence 35677888888 45666777777889886 331 036899999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 013008 424 PLIISEQELDQAVEILCK 441 (451)
Q Consensus 424 ~~~~t~e~i~~~l~~l~~ 441 (451)
....++++|+.++++|++
T Consensus 394 g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 394 GLEDPLDLLALFEEALEA 411 (412)
T ss_dssp CSSCHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHhh
Confidence 999999999998888864
No 154
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.92 E-value=5.5e-23 Score=205.55 Aligned_cols=279 Identities=15% Similarity=0.083 Sum_probs=194.3
Q ss_pred CCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008 135 NMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214 (451)
Q Consensus 135 ~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~ 214 (451)
..+.++...+++++++++++.+.+++++||++|+..+++.+. .++++|++.++.||+.......+..
T Consensus 60 ~r~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~~~-- 126 (398)
T 1gc0_A 60 SRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLL-----------RPGDEVLLGNTLYGCTFAFLHHGIG-- 126 (398)
T ss_dssp ---CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESSCCSHHHHHHHHTGG--
T ss_pred cCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-----------cCCCEEEEeCCCchhHHHHHHHHHH--
Confidence 445677789999999999997788999999999999999764 1578999999999886543321110
Q ss_pred CcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Q 013008 215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294 (451)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr 294 (451)
.....+.+++.+|+++|++.+++ ++++|+++++++++|.+.+ +++|+++|++||+++|+||+|+.+ .
T Consensus 127 -------~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~-~ 193 (398)
T 1gc0_A 127 -------EFGVKLRHVDMADLQALEAAMTP-ATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTP-Y 193 (398)
T ss_dssp -------GGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHH-H
T ss_pred -------HcCCEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCccc-c
Confidence 01123456677799999999975 7899999999888888776 999999999999999999999743 2
Q ss_pred ccccccccccCCCcceeeecccccC-Cccc-ccccccHHHHh-hccCCCcc-CCCCCcHHHHHHHHHHHHHhcC--hHHH
Q 013008 295 TGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAALVTEKVAS-AINYGDHG-STFAGSPLVCNAAIAVLDKISN--PAFL 368 (451)
Q Consensus 295 ~G~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~~~~~i~~-~~~~~~~~-~t~~~~~~~~aaa~aal~~~~~--~~~~ 368 (451)
.+.. ..++..+.+.+++|.+++ |.|+ |++++++++++ .+...... .+.+.+|+.++++.++++.+.. +...
T Consensus 194 ~~~~---~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 270 (398)
T 1gc0_A 194 LQRP---LELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHC 270 (398)
T ss_dssp HCCG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cCCc---hhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchHHHHHHHHH
Confidence 2221 123544555588999985 6787 88889887665 45433333 3456789998888888764311 1111
Q ss_pred HH------HHhCCCCccee------------------cccceeEEEEecCChHHHHHHHHHCCceeee---cC-------
Q 013008 369 AS------KLARNPHVKDV------------------RGLGLIIGIEFDVSATPVVDACRDSGLLVLT---AG------- 414 (451)
Q Consensus 369 ~~------~~~~~~~~~~v------------------~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~---~~------- 414 (451)
++ .+++++.+..+ ++.|.++.+.+........+.+.+.|+.... ++
T Consensus 271 ~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~ 350 (398)
T 1gc0_A 271 ANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQH 350 (398)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCEEEC
T ss_pred HHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHHHHHHHhCCCceeccCCCCcceeeec
Confidence 11 33444432211 2468888888853334455666677776543 10
Q ss_pred -------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008 415 -------------------KGNVVRLVPPLIISEQELDQAVEILCKT 442 (451)
Q Consensus 415 -------------------~~~~iri~~~~~~t~e~i~~~l~~l~~~ 442 (451)
..+.+|++++...++++|+.+.++|+++
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 351 PASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp GGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 0268999999999999998888888754
No 155
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.91 E-value=6.8e-24 Score=211.67 Aligned_cols=317 Identities=14% Similarity=0.112 Sum_probs=186.9
Q ss_pred EEecCCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhccccc------CCCCCHHHHHHHHHHhhccC--CCeEEecCC
Q 013008 92 LYDAEGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVS------NMYYSIPQIELAKRLVACSF--ADRVFFSNT 163 (451)
Q Consensus 92 l~d~~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~------~~~~~~~~~~l~~~l~~~~~--~e~v~~~~s 163 (451)
.++.++.-|+|+.++. ..+|++++++.+++.+..... .....+...+++++++++++ .+++++++|
T Consensus 15 ~~~~~~~iyld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g 88 (400)
T 3vax_A 15 VPRGSHMTYLDAAATT------RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSG 88 (400)
T ss_dssp -------CCCCCCCCS------SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESC
T ss_pred CcccCCcEEecCCCCC------CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCC
Confidence 3455677889977643 478999999999987531110 01112336789999999987 468999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCc-eEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHH
Q 013008 164 GTEANEAAIKFARKFQRHSNPDSKEPAT-EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEA 237 (451)
Q Consensus 164 G~eA~~~al~~a~~~~~~~~~~~~~~~~-~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~ 237 (451)
|++|+..+++++..++.. ++| .||+.++.|++.......+.. . ...+..++.+ |+++
T Consensus 89 ~t~al~~~~~~l~~~~~~-------~gd~~Vl~~~~~~~~~~~~~~~~~~-~---------g~~~~~v~~~~~~~~d~~~ 151 (400)
T 3vax_A 89 ATESNNIALLGLAPYGER-------TGRRHIITSAIEHKAVLEPLEHLAG-R---------GFEVDFLTPGPSGRISVEG 151 (400)
T ss_dssp HHHHHHHHHHTTHHHHHH-------HTCCEEEEETTSCHHHHHHHHHHHT-T---------TCEEEEECCCTTCCCCHHH
T ss_pred HHHHHHHHHHHHHHhhcc-------CCCCEEEECccccHhHHHHHHHHHh-c---------CCeEEEEccCCCCCcCHHH
Confidence 999999999987533210 478 899998888765443332210 0 0112223322 8999
Q ss_pred HHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cc
Q 013008 238 TRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AK 315 (451)
Q Consensus 238 le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK 315 (451)
|++++++ ++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+ ++... ....+. +|++++ +|
T Consensus 152 l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~~~~-~d~~~~s~~K 220 (400)
T 3vax_A 152 VMERLRP-DTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDLTTP-IDMISISGHK 220 (400)
T ss_dssp HHTTCCT-TEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGGGSC-CSEEEEETGG
T ss_pred HHHhcCC-CceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cChhhc-CcEEEEeHHH
Confidence 9999975 6889999999888898776 8999999999999999999996 33221 122233 787755 59
Q ss_pred cccCCccccccc-ccH-HHH---hhccCCC-------ccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----------H
Q 013008 316 PLAGGLPIGAAL-VTE-KVA---SAINYGD-------HGSTFAGSPLVCNAAIAVLDKISN--PAFLAS----------K 371 (451)
Q Consensus 316 ~lg~G~~iG~v~-~~~-~i~---~~~~~~~-------~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~----------~ 371 (451)
.+| +.++|+++ +++ ++. ..+.+.. .....+.++.+++++.++++.+.+ +++.++ .
T Consensus 221 ~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 299 (400)
T 3vax_A 221 IGA-PKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAG 299 (400)
T ss_dssp GTS-CSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred hCC-CCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 443 34577777 665 222 1222211 112334577777777777776532 222222 2
Q ss_pred HhCCCCcceeccc----ceeEEEEec-CChHHHHHHHHHCCceeeecC-----------------C-----CCEEEEeC-
Q 013008 372 LARNPHVKDVRGL----GLIIGIEFD-VSATPVVDACRDSGLLVLTAG-----------------K-----GNVVRLVP- 423 (451)
Q Consensus 372 ~~~~~~~~~v~g~----G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~-----------------~-----~~~iri~~- 423 (451)
++ .+.+...... +.++.+.+. .+..++.+.|. +||.+.++. . .+.+|+++
T Consensus 300 L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~ 377 (400)
T 3vax_A 300 LA-STSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWT 377 (400)
T ss_dssp HT-TTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEE
T ss_pred hC-CCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEcc
Confidence 22 4433322222 346666663 46778999999 999887642 0 27899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 013008 424 PLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 424 ~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
+..+++|++++++++|++++++
T Consensus 378 ~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 378 PGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp EC--------------------
T ss_pred CCCCCHHHHHHHHHHHHHHhcc
Confidence 8889999999999999988754
No 156
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.91 E-value=1.1e-23 Score=206.16 Aligned_cols=293 Identities=17% Similarity=0.144 Sum_probs=200.6
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 013008 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPA 190 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~ 190 (451)
.+|+|++++.+++.. +. .........+++++++++++. +++++++||++|+..+++.+. +
T Consensus 11 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~------------~- 74 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--HL-DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD------------R- 74 (353)
T ss_dssp CCHHHHGGGGSCCCC--TT-CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS------------C-
T ss_pred CCHHHHHHHhccccc--cc-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc------------C-
Confidence 679999988876643 11 001123378899999998873 579999999999999998665 3
Q ss_pred ceEEEEcCCccCChh-hhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccCCCCcccc
Q 013008 191 TEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSA 264 (451)
Q Consensus 191 ~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~ 264 (451)
++|++.++.||+... ......|. .+..++. .|+++|++.+++.++++|+++++++++|.+.+
T Consensus 75 d~vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~ 142 (353)
T 2yrr_A 75 GPVLVLVNGAFSQRVAEMAALHGL------------DPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP 142 (353)
T ss_dssp CCEEEEECSHHHHHHHHHHHHTTC------------CEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC
T ss_pred CcEEEEcCCCchHHHHHHHHHcCC------------ceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC
Confidence 789999999998521 11111121 1222221 38999999986435678888888888887766
Q ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcccccccccHHHHhhccC--C-
Q 013008 265 TKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINY--G- 339 (451)
Q Consensus 265 ~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~--~- 339 (451)
+++|.++|++||+++|+||+| ++|... .....++ +|+++ ++|.++++.++|++++++++++.+.. .
T Consensus 143 ----~~~i~~l~~~~~~~li~D~a~-~~~~~~--~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~ 213 (353)
T 2yrr_A 143 ----AEAIGALAKEAGALFFLDAVT-TLGMLP--FSMRAMG--VDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGW 213 (353)
T ss_dssp ----HHHHHHHHHHHTCEEEEECTT-TTTTSC--CCHHHHT--CSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCS
T ss_pred ----HHHHHHHHHHcCCeEEEEcCc-cccccc--ccccccC--ceEEEecCcccccCCCceEEEEECHHHHHHhccCCCc
Confidence 899999999999999999999 465432 2222333 57665 46988765568999999998887751 0
Q ss_pred ------------CccCCCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCCcceecc---cceeEEEE
Q 013008 340 ------------DHGSTFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPHVKDVRG---LGLIIGIE 391 (451)
Q Consensus 340 ------------~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~~~~v~g---~G~~~~~~ 391 (451)
.....++.++.+++++.++++.+.+. +..++ .+++. .+..+.. .+.++++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 292 (353)
T 2yrr_A 214 YLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVR 292 (353)
T ss_dssp TTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEE
T ss_pred cccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEE
Confidence 11223355777777777888765332 12222 12223 2222222 45666777
Q ss_pred ec--CChHHHHHHHHHCCceeeecC---CCCEEEEeCCCCCCHHHHH-HHHHHHHHHHHH
Q 013008 392 FD--VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELD-QAVEILCKTLPV 445 (451)
Q Consensus 392 ~~--~~~~~~~~~l~~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~-~~l~~l~~~l~~ 445 (451)
+. .+..++.+.|.++||.+.++. .++.+|++++...++++++ +++++|++++++
T Consensus 293 ~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 293 PPEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp CCTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 73 357889999999999998764 2367999987778999999 999999998764
No 157
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.91 E-value=8.2e-23 Score=203.68 Aligned_cols=296 Identities=13% Similarity=0.101 Sum_probs=197.9
Q ss_pred CCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008 112 LGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (451)
Q Consensus 112 lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~ 191 (451)
+.+.+++...++... ....+.+..+.++...+|+++++++++.+.+++++||++|+..+++.+. .+++
T Consensus 32 ~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~~-----------~~gd 99 (389)
T 3acz_A 32 FCFDSTQQGADLFMG-KGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFL-----------QKGD 99 (389)
T ss_dssp BCCSSHHHHHHHHTT-CSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTTC-----------CTTC
T ss_pred eecCChHHHHHhhcC-CCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHh-----------CCCC
Confidence 455665444333221 1223444556677789999999999997788899999999999998653 1588
Q ss_pred eEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHH
Q 013008 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQF 271 (451)
Q Consensus 192 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~ 271 (451)
+||+.++.||+......... ......+.+++..|++++++++++ ++++|++|++++++|.+.+ +++
T Consensus 100 ~vl~~~~~y~~~~~~~~~~~---------~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----l~~ 165 (389)
T 3acz_A 100 HLIAGDTLYGCTVSLFTHWL---------PRFGIEVDLIDTSDVEKVKAAWKP-NTKMVYLESPANPTCKVSD----IKG 165 (389)
T ss_dssp EEEEESSCCHHHHHHHHHHH---------HHTTCEEEEECTTCHHHHHHTCCT-TEEEEEEESSCTTTCCCCC----HHH
T ss_pred EEEEeCCCchHHHHHHHHHH---------HHcCCEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCCeecC----HHH
Confidence 99999999998543321100 011133556777899999999975 6889999999998888776 999
Q ss_pred HHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccC-Cccc-ccccccH-HHHhhccCCCccCCCC
Q 013008 272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVTE-KVASAINYGDHGSTFA 346 (451)
Q Consensus 272 l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~~-~i~~~~~~~~~~~t~~ 346 (451)
|+++|++||+++|+||+|+++ ..+.. .+..+|++ +++|.+++ |.++ |++++++ ++++.+.........+
T Consensus 166 i~~~~~~~~~~livD~~~~~~-~~~~~-----~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~ 239 (389)
T 3acz_A 166 IAVVCHERGARLVVDATFTSP-CFLKP-----LELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSL 239 (389)
T ss_dssp HHHHHHHHTCEEEEECTTTCT-TTCCG-----GGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCEEEEECCCccc-cccCc-----cccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCC
Confidence 999999999999999999754 22222 12457777 68899986 5887 9999998 8888775432222334
Q ss_pred CcHHHHHHHHHHHHHhcC--hHHHHH------HHhCCCCcce------------------ecccceeEEEEecCChHHHH
Q 013008 347 GSPLVCNAAIAVLDKISN--PAFLAS------KLARNPHVKD------------------VRGLGLIIGIEFDVSATPVV 400 (451)
Q Consensus 347 ~~~~~~aaa~aal~~~~~--~~~~~~------~~~~~~~~~~------------------v~g~G~~~~~~~~~~~~~~~ 400 (451)
.+|+.++++++.++.+.. +...++ .+++++.+.. .++.|.++.+.+.. ...+.
T Consensus 240 ~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~-~~~~~ 318 (389)
T 3acz_A 240 MAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS-FEAAK 318 (389)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-HHHHH
T ss_pred CCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-HHHHH
Confidence 678888888777764311 111111 2233221111 13557888888854 55566
Q ss_pred HHHHHCCceeeec--C---------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008 401 DACRDSGLLVLTA--G---------------------------KGNVVRLVPPLIISEQELDQAVEILCKTLP 444 (451)
Q Consensus 401 ~~l~~~Gv~~~~~--~---------------------------~~~~iri~~~~~~t~e~i~~~l~~l~~~l~ 444 (451)
+.|.+.|+++.+. | ..+.+|+++... +.++.++.|.++++
T Consensus 319 ~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~----~~~~li~~l~~al~ 387 (389)
T 3acz_A 319 KLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE----NVDDIIADLKQALE 387 (389)
T ss_dssp HHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHT
T ss_pred HHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHh
Confidence 6666778876552 1 026899987765 45555666666554
No 158
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.91 E-value=2e-23 Score=204.37 Aligned_cols=293 Identities=16% Similarity=0.084 Sum_probs=200.1
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC--CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCce
Q 013008 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ 192 (451)
.+|++++|+.+++.. + ..........+++++++++++. +.+++++||++|+..+++.+. .++++
T Consensus 12 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~-----------~~gd~ 77 (352)
T 1iug_A 12 LHPKALEALARPQLH--H-RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF-----------APGER 77 (352)
T ss_dssp CCHHHHHHHHSCCCC--T-TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC-----------CTTCE
T ss_pred CCHHHHHHhccCCCC--c-cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc-----------CCCCe
Confidence 679999998876642 1 1111122367899999999873 589999999999999999764 15889
Q ss_pred EEEEcCCccCChhhhh-hccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccCCCCccccCH
Q 013008 193 FVSFTNSFHGRTMGAL-ALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATK 266 (451)
Q Consensus 193 ii~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~ 266 (451)
|++.+++|++...... ...|.. +..++. .|+++|++ .++++|+++.+++++|.+.+
T Consensus 78 vl~~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~d~~~l~~----~~~~~v~~~~~~nptG~~~~-- 139 (352)
T 1iug_A 78 VLVPVYGKFSERFYEIALEAGLV------------VERLDYPYGDTPRPEDVAK----EGYAGLLLVHSETSTGALAD-- 139 (352)
T ss_dssp EEEEECSHHHHHHHHHHHHTTCE------------EEEEECCTTCCCCTTTSCC----SSCSEEEEESEETTTTEECC--
T ss_pred EEEEeCCchhHHHHHHHHHcCCc------------eEEEeCCCCCCCCHHHHhc----cCCcEEEEEEecCCcceecC--
Confidence 9999999998651111 111211 112221 15555554 35678888888888888766
Q ss_pred HHHHHHHHHHHHh--CCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcccccccccHHHHhhccC----
Q 013008 267 EFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINY---- 338 (451)
Q Consensus 267 ~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~---- 338 (451)
+++|.++|++| |+++|+||+|+ +|... +....+ .+|++ +++|+++++.++|++++++++++.+.+
T Consensus 140 --l~~i~~l~~~~~~~~~li~D~a~~-~~~~~--~~~~~~--~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~ 212 (352)
T 1iug_A 140 --LPALARAFKEKNPEGLVGADMVTS-LLVGE--VALEAM--GVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYY 212 (352)
T ss_dssp --HHHHHHHHHHHCTTCEEEEECTTT-BTTBC--CCSGGG--TCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSST
T ss_pred --HHHHHHHHHhhCCCCEEEEECCcc-ccCcc--eecccc--CeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCce
Confidence 89999999999 99999999996 54321 122222 35665 456988765568999999887765211
Q ss_pred ----------CCccCCCCCcHHHHHHHHHHHHHhcCh--HHHHH----------HHhCCCCcceecc--cceeEEEEec-
Q 013008 339 ----------GDHGSTFAGSPLVCNAAIAVLDKISNP--AFLAS----------KLARNPHVKDVRG--LGLIIGIEFD- 393 (451)
Q Consensus 339 ----------~~~~~t~~~~~~~~aaa~aal~~~~~~--~~~~~----------~~~~~~~~~~v~g--~G~~~~~~~~- 393 (451)
......++.++..++++.++++.+.+. +..++ .++++ .+..+.+ .+.++++.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 291 (352)
T 1iug_A 213 LDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPE 291 (352)
T ss_dssp TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCT
T ss_pred eeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCC
Confidence 011223456788888888888876443 22222 22223 2222222 5678888874
Q ss_pred -CChHHHHHHHHHCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 394 -VSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 394 -~~~~~~~~~l~~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
.+..++.+.|.++||.+.++. ..+.+|++++..++++++++++++|+++++++.
T Consensus 292 ~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 349 (352)
T 1iug_A 292 GVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEIL 349 (352)
T ss_dssp TCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhc
Confidence 357789999999999998763 137899999888899999999999999988763
No 159
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.91 E-value=2.6e-23 Score=208.39 Aligned_cols=303 Identities=14% Similarity=0.092 Sum_probs=198.5
Q ss_pred CCCCCHHHHHHHHHHHhhccccc-CCCCCHHHHHHHHHHhhccC--CCeEE-ecCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 013008 112 LGHGDADWIKAVVDQANVLTHVS-NMYYSIPQIELAKRLVACSF--ADRVF-FSNTGTEANEAAIKFARKFQRHSNPDSK 187 (451)
Q Consensus 112 lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~--~e~v~-~~~sG~eA~~~al~~a~~~~~~~~~~~~ 187 (451)
+++.++.+.+++.+++.+..... .....+...+++++++++++ .+.++ +++||++|+..+++.+.
T Consensus 15 ~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~----------- 83 (416)
T 3isl_A 15 MTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI----------- 83 (416)
T ss_dssp CSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC-----------
T ss_pred ecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc-----------
Confidence 55544444455555554422111 11112337789999999987 44454 89999999999998663
Q ss_pred CCCceEEEEcCCccCChhh-hhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCCCeEEEEEccccCCCCc
Q 013008 188 EPATEFVSFTNSFHGRTMG-ALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGI 261 (451)
Q Consensus 188 ~~~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~aavi~ep~~~~~G~ 261 (451)
.++|+||+.+++||+.... .....+. .+..++.+ |+++|+++++.+++++|+++++++++|.
T Consensus 84 ~~gd~Vl~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~ 151 (416)
T 3isl_A 84 EPEDDVLIPIYGRFGYLLTEIAERYGA------------NVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGR 151 (416)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTC------------EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTE
T ss_pred CCCCEEEEecCCcccHHHHHHHHhcCC------------eeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCce
Confidence 2689999999999983222 2222221 12223322 8999999997335788888888888887
Q ss_pred cccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcccccccccHHHHhhccCC
Q 013008 262 YSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINYG 339 (451)
Q Consensus 262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~~ 339 (451)
+.+ +++|.++|++||+++|+||+|+ +|.. ......+ .+|+++ ++|+++++.++|++++++++++.+.+.
T Consensus 152 ~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~ 222 (416)
T 3isl_A 152 IHP----LKAIGEACRTEDALFIVDAVAT-IGGC--EVKVDEW--KIDAAIGGTQKCLSVPSGMAPITYNERVADVIAAR 222 (416)
T ss_dssp ECC----CHHHHHHHHHTTCEEEEECTTT-TTTS--CCCTTTT--TCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC
T ss_pred ecC----HHHHHHHHHHcCCEEEEECCcc-ccCC--Ccchhhc--CCCEEEecCccccCCCCCeEEEEECHHHHHHhhcc
Confidence 766 9999999999999999999996 3222 1122222 356665 559887777899999999988776521
Q ss_pred C-------------------------------------cc-CCCCCcHHHHHHHHHHHHHhcCh---HHHHH--------
Q 013008 340 D-------------------------------------HG-STFAGSPLVCNAAIAVLDKISNP---AFLAS-------- 370 (451)
Q Consensus 340 ~-------------------------------------~~-~t~~~~~~~~aaa~aal~~~~~~---~~~~~-------- 370 (451)
. .. ...+.+..+++++.++++.+... +..++
T Consensus 223 ~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l 302 (416)
T 3isl_A 223 KKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAAL 302 (416)
T ss_dssp ------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 0 11 12245677777777887765432 22222
Q ss_pred --HHhCCCCcceecc----cceeEEEEec--CChHHHHHHHHHC-CceeeecC---CCCEEEEeCCCCCCHHH-HHHHHH
Q 013008 371 --KLARNPHVKDVRG----LGLIIGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVPPLIISEQE-LDQAVE 437 (451)
Q Consensus 371 --~~~~~~~~~~v~g----~G~~~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~~~~~t~e~-i~~~l~ 437 (451)
.++.. .+..... .+.++++.+. .+..++.+.|+++ ||.+.++. .++.+|++++...++++ ++++++
T Consensus 303 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~ 381 (416)
T 3isl_A 303 AAGIKAM-GLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLA 381 (416)
T ss_dssp HHHHHHT-TCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHH
T ss_pred HHHHHHc-CCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHH
Confidence 12222 2211211 2567777773 4678899999887 99998753 24789999866556666 999999
Q ss_pred HHHHHHHHHh
Q 013008 438 ILCKTLPVLD 447 (451)
Q Consensus 438 ~l~~~l~~~~ 447 (451)
+|+++++++.
T Consensus 382 ~l~~~~~~~~ 391 (416)
T 3isl_A 382 GLEAVLLRHN 391 (416)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999998753
No 160
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.91 E-value=7.9e-24 Score=208.12 Aligned_cols=314 Identities=13% Similarity=0.069 Sum_probs=196.2
Q ss_pred EEEe-eccCcccccCCC-CCHHHHHHHHHHHhhccc--ccCCCC-CHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHH
Q 013008 99 EYLD-LSSGIAVNALGH-GDADWIKAVVDQANVLTH--VSNMYY-SIPQIELAKRLVACSFADRVFFSNTGTEANEAAIK 173 (451)
Q Consensus 99 ~~iD-~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~--~~~~~~-~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~ 173 (451)
+|+| |.++.+ ||+ .||.+.+++.++++.+.. ....+. .+...+|+++++++++.+..++++||++|+..+++
T Consensus 4 ~~~~~~~~~~~---l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~ 80 (357)
T 3lws_A 4 RLRTSFQQTTG---QISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALR 80 (357)
T ss_dssp HHHHHHHTCSE---ESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHH
T ss_pred hhhhHHHhhcc---cccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHH
Confidence 4555 444333 565 578888888887775321 112222 24478999999999998877888999999999999
Q ss_pred HHHHHhhhcCCCCCCCCce-EEEEcCCccCChhhh---hhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEE
Q 013008 174 FARKFQRHSNPDSKEPATE-FVSFTNSFHGRTMGA---LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA 249 (451)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~-ii~~~~~yhg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aa 249 (451)
++.. ++++ +|+.++.||...... ....+..... .+. .+. .-|+++|+++. ++++
T Consensus 81 ~~~~-----------~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~---v~~-~~~----~~d~~~l~~~~---~~~~ 138 (357)
T 3lws_A 81 IWSD-----------ETDNRTVAYHPLCHLEIHEQDGLKELHPIETIL---VGA-ADR----LMTLDEIKALP---DIAC 138 (357)
T ss_dssp HHHH-----------HHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEE---CSC-TTS----CCCHHHHHTCC---SCSE
T ss_pred HHhh-----------cCCCcEEEecccceeeeeccchhhhccCcEEEE---ecC-CCC----CcCHHHHhcCc---Ccce
Confidence 7764 2443 667777776543321 1111211100 010 000 12889998873 2677
Q ss_pred EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-----CCCcccccccccccCCCcc--eeeecccccCCcc
Q 013008 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-----GLGRTGYLWAHEHYGIFPD--IMTLAKPLAGGLP 322 (451)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-----g~gr~G~~~~~~~~~~~pd--i~t~sK~lg~G~~ 322 (451)
|+++++++++|+.+++.+++++|+++|++||++||+||+|. .+++....+. ...| +.++||++++. .
T Consensus 139 v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-----~~~d~~~~s~sK~~~~~-~ 212 (357)
T 3lws_A 139 LLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-----GLFDSIYISFYKGLGGI-A 212 (357)
T ss_dssp EEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-----TTSSEEEEESSSTTCCS-S
T ss_pred EEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-----hcCCEEEEeccccCCCC-c
Confidence 77777766653357899999999999999999999999975 1222211111 1234 44899999542 2
Q ss_pred cccccccHHHHhhccCC--CccCCCCCcHHHHHHHHHHHHHhcCh--HHHHH------HHhCCCCcce--ecccceeEEE
Q 013008 323 IGAALVTEKVASAINYG--DHGSTFAGSPLVCNAAIAVLDKISNP--AFLAS------KLARNPHVKD--VRGLGLIIGI 390 (451)
Q Consensus 323 iG~v~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aal~~~~~~--~~~~~------~~~~~~~~~~--v~g~G~~~~~ 390 (451)
.|++++++++++.+... ...++.......++++.++|+...+. ...++ .++.+|.+.. .+..+.++++
T Consensus 213 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~ 292 (357)
T 3lws_A 213 GAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHL 292 (357)
T ss_dssp CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEE
T ss_pred eEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEE
Confidence 28888999988877532 12222222333445555667643221 11111 3455665543 2456778888
Q ss_pred EecCC----hHHHHHHHHHCCceeeecCC--C--CEEEEeCC---CCCCHHHHHHHHHHHHHHH
Q 013008 391 EFDVS----ATPVVDACRDSGLLVLTAGK--G--NVVRLVPP---LIISEQELDQAVEILCKTL 443 (451)
Q Consensus 391 ~~~~~----~~~~~~~l~~~Gv~~~~~~~--~--~~iri~~~---~~~t~e~i~~~l~~l~~~l 443 (451)
.+... ..++.+.|.++||++.|+.. + ..+|+++. +..+++++++++++|.+++
T Consensus 293 ~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 293 HFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred EecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 88533 56788889999999987631 1 36788765 3468999999999998875
No 161
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.91 E-value=2.3e-23 Score=207.50 Aligned_cols=302 Identities=13% Similarity=0.042 Sum_probs=199.4
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC--CC-eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF--AD-RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~e-~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~ 191 (451)
.+|++.+++.+++.. + +..+......++.++++++++ .+ ++++++||++|+..+++++. .+++
T Consensus 29 ~~~~v~~a~~~~~~~--~-~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~-----------~~gd 94 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--N-FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL-----------EEGD 94 (396)
T ss_dssp CCHHHHHHTTSCCCC--T-TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-----------CTTC
T ss_pred CCHHHHHHhcccccc--C-CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc-----------CCCC
Confidence 568888887664421 1 111111237789999999987 44 79999999999999999764 1588
Q ss_pred eEEEEcCCccCChh-hhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHH
Q 013008 192 EFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (451)
Q Consensus 192 ~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~ 270 (451)
+|++.+|+|+++.. ......|..... .+...+. ..|+++|++++++.++++|+++++++++|.+.+ ++
T Consensus 95 ~vl~~~~~~~~~~~~~~~~~~g~~~~~---v~~~~~~----~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~----~~ 163 (396)
T 2ch1_A 95 RVLIAVNGIWAERAVEMSERYGADVRT---IEGPPDR----PFSLETLARAIELHQPKCLFLTHGDSSSGLLQP----LE 163 (396)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEE---EECCTTS----CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC----CT
T ss_pred eEEEEcCCcccHHHHHHHHHcCCceEE---ecCCCCC----CCCHHHHHHHHHhCCCCEEEEECCCCCCceecC----HH
Confidence 99999999998641 122222211100 1111110 138999999986424677788777777787666 89
Q ss_pred HHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhhccCCC--------
Q 013008 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASAINYGD-------- 340 (451)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~~~~~~-------- 340 (451)
+|.++|++||+++|+||+|. +|.. ..... ...+|++++| |.++++.++|++++++++++.+....
T Consensus 164 ~i~~l~~~~~~~li~Dea~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 238 (396)
T 2ch1_A 164 GVGQICHQHDCLLIVDAVAS-LCGV--PFYMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYW 238 (396)
T ss_dssp THHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGG
T ss_pred HHHHHHHHcCCEEEEEcccc-ccCC--ccchh--hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEe
Confidence 99999999999999999996 5432 11222 2346877655 99987667799999998887663210
Q ss_pred ---------------ccCCCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCCcceeccc-----cee
Q 013008 341 ---------------HGSTFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPHVKDVRGL-----GLI 387 (451)
Q Consensus 341 ---------------~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~~~~v~g~-----G~~ 387 (451)
....++.+..+++++.++|+.+.++ +..++ .++++. +..+.+. +.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~ 317 (396)
T 2ch1_A 239 DLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMG-LDIFVKDPRHRLPTV 317 (396)
T ss_dssp CHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CCBSSCSGGGBCTTE
T ss_pred chHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCC-CeeccCCccccCCce
Confidence 1112345677888888888765222 12221 122221 2112222 346
Q ss_pred EEEEec--CChHHHHHHHHHC-CceeeecC---CCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 388 IGIEFD--VSATPVVDACRDS-GLLVLTAG---KGNVVRLVP-PLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 388 ~~~~~~--~~~~~~~~~l~~~-Gv~~~~~~---~~~~iri~~-~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
+++.+. .+..++.+.|+++ ||.+.++. .++.+|+++ ++.+++|++++++++|++++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 318 TGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 777763 3577899999876 99998753 237899998 567899999999999999998765
No 162
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.3e-23 Score=211.61 Aligned_cols=318 Identities=15% Similarity=0.088 Sum_probs=203.3
Q ss_pred CCCHHHHHHHHHHHhhcccccC--CCCC----HHHHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHHHHHHhhhcC
Q 013008 114 HGDADWIKAVVDQANVLTHVSN--MYYS----IPQIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQRHSN 183 (451)
Q Consensus 114 ~~~p~v~~a~~~~~~~~~~~~~--~~~~----~~~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~a~~~~~~~~ 183 (451)
++++.+.+++.+++........ +... ....+++++++++++. +++++++||++|+..++++++.++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 3568999999998887433211 1112 2255777888888773 4899999999999999999987653221
Q ss_pred CCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 013008 184 PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (451)
Q Consensus 184 ~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~ 262 (451)
+. +++.|++.+++|+.+. .+....|..... .+..+ +.. -|+++|++++++ ++++|+++.++++.|.+
T Consensus 155 g~---~~~~Vi~~~~~h~~~~-~~~~~~G~~~~~---v~~~~~~~~----~d~~~l~~~i~~-~~~~v~~~~p~nptG~~ 222 (497)
T 3mc6_A 155 GI---TEPEIIAPVTAHAGFD-KAAYYFGMKLRH---VELDPTTYQ----VDLGKVKKFINK-NTVLLVGSAPNFPHGIA 222 (497)
T ss_dssp CC---SSCEEEEETTSCHHHH-HHHHHSCCEEEE---ECBCTTTCS----BCTTTTGGGCCS-SEEEEEEETTCTTTCCC
T ss_pred CC---CCceEEEeCCccHHHH-HHHHHcCCeEEE---EecCcccCc----CCHHHHHHHHhh-CCEEEEEECCCCCCCcC
Confidence 11 2478888888876544 333332221111 11111 111 168899999975 57888888888888887
Q ss_pred ccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc-----c--c--cccccccCCCcceee--ecccccCCcccccccccHH
Q 013008 263 SATKEFLQFLRDACDDAGALLVFDEVQCGLGRT-----G--Y--LWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEK 331 (451)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-----G--~--~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~ 331 (451)
.+ +++|+++|++||++||+||+|+++.+. | . .+.....+ .|+++ +.|.+.+|.++|+++++++
T Consensus 223 ~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g--~d~~~~s~~K~l~~~~~~g~~~~~~~ 296 (497)
T 3mc6_A 223 DD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPG--VTSISCDTHKYGFAPKGSSVIMYRNS 296 (497)
T ss_dssp CS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTT--CCEEEEETTTTTCCCSSCEEEECSSH
T ss_pred CC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCC--CcEEEECchhhcCCCCCceeEEecCH
Confidence 66 889999999999999999999865332 1 1 12233334 35554 4588877889999998766
Q ss_pred HHhhccC----CCccC-----CCCC--cHHHHHHHHHHHHHhcChHHHH---H----------HHhC-CCCccee-cccc
Q 013008 332 VASAINY----GDHGS-----TFAG--SPLVCNAAIAVLDKISNPAFLA---S----------KLAR-NPHVKDV-RGLG 385 (451)
Q Consensus 332 i~~~~~~----~~~~~-----t~~~--~~~~~aaa~aal~~~~~~~~~~---~----------~~~~-~~~~~~v-~g~G 385 (451)
.+..... ....+ ++.+ +....++..++++.+..+++.+ + .+++ +|.+..+ .+.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~ 376 (497)
T 3mc6_A 297 DLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRY 376 (497)
T ss_dssp HHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCS
T ss_pred HHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCe
Confidence 5544321 11111 1111 2222334444444443332221 1 2333 4544333 3455
Q ss_pred eeEEEEec-CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 013008 386 LIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS 450 (451)
Q Consensus 386 ~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~~ 450 (451)
.++.+... .+..++.+.|.++||.+.+...+..+|++++ .+|++++++++++|++++++++.++
T Consensus 377 ~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~~~ 441 (497)
T 3mc6_A 377 SVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQELKSES 441 (497)
T ss_dssp SEEEEECTTTTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTCC-
T ss_pred eEEEEeCCCCCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 66666653 4678899999999999887654456899988 7899999999999999998876553
No 163
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.91 E-value=2.3e-23 Score=209.12 Aligned_cols=279 Identities=19% Similarity=0.146 Sum_probs=190.6
Q ss_pred cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (451)
Q Consensus 132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (451)
+.+..+.++...+|+++|+++.+.+.+++++||++|+..+++++. .++|+||+.+++||+........
T Consensus 73 ~~y~r~~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l~-----------~~Gd~Vi~~~~~y~~~~~~~~~~- 140 (414)
T 3ndn_A 73 YVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALL-----------GAGDRLVAARSLFGSCFVVCSEI- 140 (414)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-----------CTTCEEEEESCCCHHHHHHHHTH-
T ss_pred cCcCCCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEcCCccchHHHHHHHH-
Confidence 445566778899999999999999999999999999999998654 26899999999999864332110
Q ss_pred CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (451)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg 291 (451)
+......+.+++.+|+++|++++++ ++++|++|++++++|.+.+ +++|+++|++||++||+||+|+
T Consensus 141 --------~~~~g~~~~~v~~~d~~~l~~ai~~-~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~- 206 (414)
T 3ndn_A 141 --------LPRWGVQTVFVDGDDLSQWERALSV-PTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFA- 206 (414)
T ss_dssp --------HHHTTCEEEEECTTCHHHHHHHTSS-CCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT-
T ss_pred --------HHHcCcEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCc-
Confidence 0112245667888899999999975 6788999999999888766 9999999999999999999996
Q ss_pred CCcccccccccccCCCcceeeecccccC-C-cccccccccHHHHh-hccCCCccCCCCCcHHHHHHHHHHHHHhcC--hH
Q 013008 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAG-G-LPIGAALVTEKVAS-AINYGDHGSTFAGSPLVCNAAIAVLDKISN--PA 366 (451)
Q Consensus 292 ~gr~G~~~~~~~~~~~pdi~t~sK~lg~-G-~~iG~v~~~~~i~~-~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~ 366 (451)
+|..+....++..+.+.+++|.+++ | +++|+++++++.+. .+...........+++.+++++..++.+.. +.
T Consensus 207 ---~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~ 283 (414)
T 3ndn_A 207 ---TPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQH 283 (414)
T ss_dssp ---HHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHHHH
T ss_pred ---ccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2221222244555555678999987 7 89999999987765 443211111223467777766665554321 11
Q ss_pred HHHH------HHhCCCCcce------------------ecccceeEEEEecCC-------hHHHHHHHHHCCceeeecC-
Q 013008 367 FLAS------KLARNPHVKD------------------VRGLGLIIGIEFDVS-------ATPVVDACRDSGLLVLTAG- 414 (451)
Q Consensus 367 ~~~~------~~~~~~~~~~------------------v~g~G~~~~~~~~~~-------~~~~~~~l~~~Gv~~~~~~- 414 (451)
..++ .++++|.+.. ++|.|.+++|++... ..+|.+.|...++.+..++
T Consensus 284 ~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~ 363 (414)
T 3ndn_A 284 SNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDA 363 (414)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCS
T ss_pred HHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCC
Confidence 1111 4455554432 256789999999532 3455555554444433221
Q ss_pred -------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 415 -------------------------KGNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 415 -------------------------~~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
..+.+|+++.+ |+.+.+++.|+++|
T Consensus 364 ~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 364 KSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp SCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred CceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 13678887654 56667777777765
No 164
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.90 E-value=7.1e-23 Score=204.61 Aligned_cols=318 Identities=14% Similarity=0.098 Sum_probs=201.0
Q ss_pred CEEEeeccCcccccCCCCCHHHHHHHHHHHh-hcccccC---CC-CCHHHHHHH----HHHhhccCCCeE-EecCCHHHH
Q 013008 98 REYLDLSSGIAVNALGHGDADWIKAVVDQAN-VLTHVSN---MY-YSIPQIELA----KRLVACSFADRV-FFSNTGTEA 167 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~---~~-~~~~~~~l~----~~l~~~~~~e~v-~~~~sG~eA 167 (451)
+.++|+.++.+ + +|++++|+.+++. .+..++. .+ ......+++ ++++++++.+.. +++++|++|
T Consensus 24 ~~~~~~~~~~~---~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a 97 (405)
T 2vi8_A 24 AKIELIASENF---V---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQA 97 (405)
T ss_dssp HSEECCTTCCC---C---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred cceeeccCccc---C---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHH
Confidence 34677765533 3 8999999999885 3322111 11 223344444 688888885544 456788999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhh--hhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC
Q 013008 168 NEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGA--LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG 245 (451)
Q Consensus 168 ~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 245 (451)
+..+++++. .++++|++.++.|+...... ....+.. ......+..+.. ...|+++|++++++.
T Consensus 98 ~~~a~~~~~-----------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~~d~~~l~~~i~~~ 162 (405)
T 2vi8_A 98 NMAVYFTVL-----------EHGDTVLGMNLSHGGHLTHGSPVNFSGVQ-YNFVAYGVDPET---HVIDYDDVREKARLH 162 (405)
T ss_dssp HHHHHHHHC-----------CTTCEEEEECGGGTCCTTTTCTTSHHHHH-SEEEEECBCTTT---CSBCHHHHHHHHHHH
T ss_pred HHHHHHHhc-----------CCCCEEEEecccccchhcccchhhhccce-eEEEeccccccc---CCcCHHHHHHHHHhc
Confidence 999999774 15889999998876553211 1111110 000000100000 013899999998642
Q ss_pred CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC-Cccee--eecccccCCcc
Q 013008 246 KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIM--TLAKPLAGGLP 322 (451)
Q Consensus 246 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~--t~sK~lg~G~~ 322 (451)
++++|++.|.+ .|...+ +++|+++|++||++||+||+|+ +|+.+.... ...+ .+|++ +++|+++|+..
T Consensus 163 ~~~~v~~~~~~--~~~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~~--~~~~~~~di~~~s~sK~~~g~~g 233 (405)
T 2vi8_A 163 RPKLIVAAAAA--YPRIID----FAKFREIADEVGAYLMVDMAHI-AGLVAAGLH--PNPVPYAHFVTTTTHKTLRGPRG 233 (405)
T ss_dssp CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTT-HHHHHTTSS--CCSTTTCSEEEEESSSTTCCCSC
T ss_pred CCeEEEEeCCC--CCccCC----HHHHHHHHHHcCCEEEEEcccc-ccccccCcC--CCccccCCEEEEeccccCCCCCC
Confidence 46777775532 232223 8999999999999999999997 544432111 1112 46776 78999985433
Q ss_pred cccccccHHHHhhccCCCccCCCCC-cHHHHHHHHHHHHHhcC---hHHHHH----------HHhCCCCcceec--ccce
Q 013008 323 IGAALVTEKVASAINYGDHGSTFAG-SPLVCNAAIAVLDKISN---PAFLAS----------KLARNPHVKDVR--GLGL 386 (451)
Q Consensus 323 iG~v~~~~~i~~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~----------~~~~~~~~~~v~--g~G~ 386 (451)
|++++++++++.+.......++++ ++..++++.++++.+.. ++..++ .++++. +..+. +.+.
T Consensus 234 -G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~ 311 (405)
T 2vi8_A 234 -GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEG-FTLVSGGTDNH 311 (405)
T ss_dssp -EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSS
T ss_pred -eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCC-CeEecCCCCce
Confidence 999999998887754322334444 56777777778876543 222222 222222 22222 3578
Q ss_pred eEEEEec---CChHHHHHHHHHCCceeeecC---------CCCEEEEeCCC----CCCHHHHHHHHHHHHHHHHHHh
Q 013008 387 IIGIEFD---VSATPVVDACRDSGLLVLTAG---------KGNVVRLVPPL----IISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 387 ~~~~~~~---~~~~~~~~~l~~~Gv~~~~~~---------~~~~iri~~~~----~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
++++.+. .....+.+.|.++||.+.++. .++.+|++++. .++++++++++++|++++++++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 312 LLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp EEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred EEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 8888874 256788899999999998752 13579999886 6799999999999999987664
No 165
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.90 E-value=1.5e-22 Score=196.93 Aligned_cols=269 Identities=13% Similarity=0.072 Sum_probs=189.8
Q ss_pred HHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC
Q 013008 144 ELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV 223 (451)
Q Consensus 144 ~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 223 (451)
+++++++++++.+..++++||++|+..+++.+. .++++|++.++.||+.......... ..
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~-----------~~g~~v~~~~~~~~~~~~~~~~~~~---------~~ 61 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFL-----------KAGDHLISDDCLYGCTHALFEHQLR---------KF 61 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEEESCCCHHHHHHHHTHHH---------HT
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc-----------CCCCEEEEcCCCcchHHHHHHHHHH---------hc
Confidence 577888888887788888889999999999653 1578999999999986543321100 01
Q ss_pred CCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHH-hCCEEEEeccccCCCccccccccc
Q 013008 224 MPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD-AGALLVFDEVQCGLGRTGYLWAHE 302 (451)
Q Consensus 224 ~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~-~g~llI~DEv~tg~gr~G~~~~~~ 302 (451)
...+.+++..|++++++.+++ ++++|+++++++++|.+.+ +++|.++|++ ||+++|+||+|+.+ .... ..
T Consensus 62 g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~-~~~~--~~- 132 (331)
T 1pff_A 62 GVEVDFIDMAVPGNIEKHLKP-NTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP-ILTN--PL- 132 (331)
T ss_dssp TCEEEEECTTSTTHHHHTCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH-HHCC--GG-
T ss_pred CCEEEEeCCCCHHHHHHhhcC-CCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCccc-ccCC--hh-
Confidence 123445666789999999974 6889999998888888776 9999999999 99999999999632 2111 11
Q ss_pred ccCCCcceeeecccccC-Ccc-cccccccH-HHHhhccCCCcc-CCCCCcHHHHHHHHHHHHHhcC--hHHHHH------
Q 013008 303 HYGIFPDIMTLAKPLAG-GLP-IGAALVTE-KVASAINYGDHG-STFAGSPLVCNAAIAVLDKISN--PAFLAS------ 370 (451)
Q Consensus 303 ~~~~~pdi~t~sK~lg~-G~~-iG~v~~~~-~i~~~~~~~~~~-~t~~~~~~~~aaa~aal~~~~~--~~~~~~------ 370 (451)
.++....+.+++|.+++ |.| +|++++++ ++++.+.+.... .+.+.+++.+.++.++++.+.. +.+.++
T Consensus 133 ~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 212 (331)
T 1pff_A 133 DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAE 212 (331)
T ss_dssp GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHH
Confidence 23434444578999986 678 78999998 998888765555 5667888888887777764321 111111
Q ss_pred HHhCCC--------Ccce----------ecccceeEEEEecCChHHHHHHHHHCCceeeec-------------------
Q 013008 371 KLARNP--------HVKD----------VRGLGLIIGIEFDVSATPVVDACRDSGLLVLTA------------------- 413 (451)
Q Consensus 371 ~~~~~~--------~~~~----------v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~------------------- 413 (451)
.+++.+ .+.. .++.|.++.+.+. ....+.+.|.++||++.+.
T Consensus 213 ~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~ 291 (331)
T 1pff_A 213 FLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAG 291 (331)
T ss_dssp HHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTT
T ss_pred HHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccc
Confidence 121111 1111 1345778888875 5667888888899976432
Q ss_pred ---------CC-CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008 414 ---------GK-GNVVRLVPPLIISEQELDQAVEILCKT 442 (451)
Q Consensus 414 ---------~~-~~~iri~~~~~~t~e~i~~~l~~l~~~ 442 (451)
+. .+.+|++++...++++++++++.|+++
T Consensus 292 ~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 292 VPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp SCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred cCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 11 368999999999999999999988754
No 166
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.90 E-value=1.5e-22 Score=204.28 Aligned_cols=331 Identities=18% Similarity=0.152 Sum_probs=192.7
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCC------HHHHHHHHHHhhccC--CCeEEecCCHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYS------IPQIELAKRLVACSF--ADRVFFSNTGTEA 167 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~~--~e~v~~~~sG~eA 167 (451)
+|..|+|+.++. +.+|++++++.+++......+...+. +...++.++++++++ .+++++++||++|
T Consensus 17 ~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence 567888876642 57999999999998763211111111 124689999999887 4689999999999
Q ss_pred HHHHHHHHHH-HhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCC----cCCCCCeeEeeC------CCHH
Q 013008 168 NEAAIKFARK-FQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPF----EPVMPGVNFVEY------GNIE 236 (451)
Q Consensus 168 ~~~al~~a~~-~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~d~~ 236 (451)
++.+++.+.. +..... .++++|++++|+||++................+ ......+..++. .|++
T Consensus 91 ~~~~~~~~~~~~~~~~~----~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~ 166 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQT----LQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVE 166 (432)
T ss_dssp HHHHHHHHHHHHHHHHH----HC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHH
T ss_pred HHHHHHHHHhhhhhccc----cCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHH
Confidence 9999998742 210000 047899999999998621100000000000000 000111222222 2799
Q ss_pred HHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhC----------CEEEEeccccCCCcccccccccccCC
Q 013008 237 ATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG----------ALLVFDEVQCGLGRTGYLWAHEHYGI 306 (451)
Q Consensus 237 ~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g----------~llI~DEv~tg~gr~G~~~~~~~~~~ 306 (451)
+|++++++ ++++|+++++++++|.+.+ +++|.++|++|| +++|+||+|. +|... ..... .
T Consensus 167 ~l~~~i~~-~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~~~~--~~~~~--~ 236 (432)
T 3a9z_A 167 DILAAVRP-TTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LGKRR--VDVED--L 236 (432)
T ss_dssp HHHHTCCT-TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TTTSC--CCHHH--H
T ss_pred HHHHhccC-CceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hCCcc--cChhh--c
Confidence 99999975 6889999998888888777 789999999999 9999999994 54332 11112 2
Q ss_pred Cccee--eecccccCCcccccccccHHH-HhhccCCC-------ccCCCCCcHHHHHHHHHHHHHhcC--hHHHHH----
Q 013008 307 FPDIM--TLAKPLAGGLPIGAALVTEKV-ASAINYGD-------HGSTFAGSPLVCNAAIAVLDKISN--PAFLAS---- 370 (451)
Q Consensus 307 ~pdi~--t~sK~lg~G~~iG~v~~~~~i-~~~~~~~~-------~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~---- 370 (451)
.+|++ +++|.+ |.++|++++++++ ...+.+.. ...+++.|+++++++.++++.+.+ ++..++
T Consensus 237 ~~d~~~~s~~K~~--g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~ 314 (432)
T 3a9z_A 237 GVDFLTIVGHKFY--GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDI 314 (432)
T ss_dssp CCSEEEEEGGGTT--CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEehhHhc--CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46766 458976 4569999998775 34443321 112345688888888888886543 122221
Q ss_pred ---H---HhCCCCcce--------ecccceeEEEEecC---ChHHHHHHHH----HCCceeeec------------CC--
Q 013008 371 ---K---LARNPHVKD--------VRGLGLIIGIEFDV---SATPVVDACR----DSGLLVLTA------------GK-- 415 (451)
Q Consensus 371 ---~---~~~~~~~~~--------v~g~G~~~~~~~~~---~~~~~~~~l~----~~Gv~~~~~------------~~-- 415 (451)
+ +++++.... .+..+.+.++.+.. ....+.+.+. +.|+.+.+. +.
T Consensus 315 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~ 394 (432)
T 3a9z_A 315 RDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPV 394 (432)
T ss_dssp HHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCH
T ss_pred HHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCc
Confidence 1 122211110 11235566676632 3455555441 223333221 11
Q ss_pred ---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 416 ---GNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 416 ---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
.+.+|++++..+|+||+++++++|++++++++.
T Consensus 395 ~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~~ 430 (432)
T 3a9z_A 395 DVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEG 430 (432)
T ss_dssp HHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred cccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 268999999888999999999999999987653
No 167
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.90 E-value=1e-22 Score=203.41 Aligned_cols=233 Identities=15% Similarity=0.144 Sum_probs=166.0
Q ss_pred cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (451)
Q Consensus 132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (451)
+.+..+.++...+|+++|+++.+.+.+++++||++|++.++.+++ ++++||+.++.||+.........
T Consensus 59 ~~y~r~~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~~~~l~~------------~gd~Vi~~~~~y~~~~~~~~~~~ 126 (400)
T 3nmy_A 59 FEYSRTHNPTRFAYERCVAALEGGTRAFAFASGMAATSTVMELLD------------AGSHVVAMDDLYGGTFRLFERVR 126 (400)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTSC------------TTCEEEEESSCCHHHHHHHHHTH
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHHHHHHcC------------CCCEEEEeCCCchHHHHHHHHhh
Confidence 345567788899999999999998899999999999998543222 68899999999987654332210
Q ss_pred CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (451)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg 291 (451)
+......+.+++.+|+++|++++++ ++++|++|++++++|.+.+ +++|+++|++||+++|+||+|+.
T Consensus 127 --------~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~ 193 (400)
T 3nmy_A 127 --------RRTAGLDFSFVDLTDPAAFKAAIRA-DTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS 193 (400)
T ss_dssp --------HHHHCCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH
T ss_pred --------HhhcCeEEEEECCCCHHHHHHHhcc-CCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc
Confidence 0011234567788899999999975 6899999999999998776 99999999999999999999952
Q ss_pred CCcccccccccccCCCcceeeecccccC-Cccccc--cc-ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--h
Q 013008 292 LGRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPIGA--AL-VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--P 365 (451)
Q Consensus 292 ~gr~G~~~~~~~~~~~pdi~t~sK~lg~-G~~iG~--v~-~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~ 365 (451)
. ... ....++..+.+.+++|+++| |.++|. ++ .++++++.+.......+...+|+.+++++..++.+.. +
T Consensus 194 ~-~~~---~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l~~r~~ 269 (400)
T 3nmy_A 194 P-MLQ---RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLPLRMR 269 (400)
T ss_dssp H-HHC---CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTHHHHHH
T ss_pred c-ccC---ChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHHHHHHH
Confidence 1 111 12223545555579999986 466544 33 4778888776444445566788888888777765421 1
Q ss_pred HHHHH------HHhCCCCccee------------------cccceeEEEEec
Q 013008 366 AFLAS------KLARNPHVKDV------------------RGLGLIIGIEFD 393 (451)
Q Consensus 366 ~~~~~------~~~~~~~~~~v------------------~g~G~~~~~~~~ 393 (451)
...++ .++.+|.+..+ +|.|.+++|++.
T Consensus 270 ~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~ 321 (400)
T 3nmy_A 270 AHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK 321 (400)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred HHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC
Confidence 11111 44566766555 778999999995
No 168
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.90 E-value=8.5e-23 Score=210.15 Aligned_cols=314 Identities=11% Similarity=0.045 Sum_probs=198.0
Q ss_pred CCHHHHHHHHHHHhhccc-ccCCC-----CCHHHHHHHHHHhhccC----CCeEEecCCHHHHHHHHHHHHHHHhhhcCC
Q 013008 115 GDADWIKAVVDQANVLTH-VSNMY-----YSIPQIELAKRLVACSF----ADRVFFSNTGTEANEAAIKFARKFQRHSNP 184 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~-~~~~~-----~~~~~~~l~~~l~~~~~----~e~v~~~~sG~eA~~~al~~a~~~~~~~~~ 184 (451)
-++++++++.+++..... ....| ....+.++++++.+..+ .++|++|+||++|+..+++++.. .
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~---- 180 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR--N---- 180 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC--S----
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC--C----
Confidence 567788888887776321 11112 22335666666655433 68999999999999999997630 1
Q ss_pred CCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCC-----CCeEEEEEccccCCC
Q 013008 185 DSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQP-----GKTAAVFVEPIQGEG 259 (451)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~aavi~ep~~~~~ 259 (451)
++|.|++.+|+|+++.......+.... . .+...+..+ ..|+++|++.+++ .++++|++...++++
T Consensus 181 ----~gd~Vlv~~p~y~~~~~~~~~~g~~~~-~---~~~~~~~~~--~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPt 250 (500)
T 3tcm_A 181 ----EKDGILVPIPQYPLYSASIALHGGALV-P---YYLNESTGW--GLETSDVKKQLEDARSRGINVRALVVINPGNPT 250 (500)
T ss_dssp ----TTEEEEEEESCCTHHHHHHHHTTCEEE-E---EECBTTTTS--BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTT
T ss_pred ----CCCEEEEeCCCcHhHHHHHHHcCCEEE-E---EecccccCC--CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCC
Confidence 589999999999887654433322111 1 011110000 1389999999863 145555555445555
Q ss_pred CccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--cccc----cccCC-C--cc-ee--eecccc-c-CCccccc
Q 013008 260 GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAH----EHYGI-F--PD-IM--TLAKPL-A-GGLPIGA 325 (451)
Q Consensus 260 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~----~~~~~-~--pd-i~--t~sK~l-g-~G~~iG~ 325 (451)
|. +++.+.+++|+++|++||+++|+||+|.++.+.+. ...+ ..++. . .+ ++ +|||++ | .|+|+||
T Consensus 251 G~-~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~ 329 (500)
T 3tcm_A 251 GQ-VLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGY 329 (500)
T ss_dssp CC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEE
T ss_pred cc-cCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEE
Confidence 54 67899999999999999999999999988644321 1111 12221 1 12 22 889999 5 4899999
Q ss_pred ccc---cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH-----------hcC-hHHHHH----------HHhCCCCcce
Q 013008 326 ALV---TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----------ISN-PAFLAS----------KLARNPHVKD 380 (451)
Q Consensus 326 v~~---~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----------~~~-~~~~~~----------~~~~~~~~~~ 380 (451)
+++ ++++++.+.... ..+++.++++++++.++++. .+. +...++ .++++|.+..
T Consensus 330 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~ 408 (500)
T 3tcm_A 330 FEITGFSAPVREQIYKIA-SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITC 408 (500)
T ss_dssp EEEESCCTTHHHHHHHHH-HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred EEEeCCCHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 987 888888775322 34566788888888777741 111 111111 3345565555
Q ss_pred ecccc-eeEEEEecCC--------------hHHHH-HHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHH
Q 013008 381 VRGLG-LIIGIEFDVS--------------ATPVV-DACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEI 438 (451)
Q Consensus 381 v~g~G-~~~~~~~~~~--------------~~~~~-~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~ 438 (451)
..+.| +++++.+... ...++ +.|.++||++.|+.. .+.+|+++. ++++++++++++
T Consensus 409 ~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~ 486 (500)
T 3tcm_A 409 NEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISR 486 (500)
T ss_dssp CCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHH
T ss_pred ecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHH
Confidence 55554 4445444311 12233 444467999998631 246898766 899999999999
Q ss_pred HHHHHHHHhh
Q 013008 439 LCKTLPVLDS 448 (451)
Q Consensus 439 l~~~l~~~~~ 448 (451)
|.++++++.+
T Consensus 487 l~~~~~~~~~ 496 (500)
T 3tcm_A 487 FTVFHEAFMS 496 (500)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 169
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.90 E-value=3.5e-23 Score=203.52 Aligned_cols=299 Identities=13% Similarity=0.070 Sum_probs=187.3
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCce-E
Q 013008 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE-F 193 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~-i 193 (451)
.||++.+|+.+.+.. ..+++.+...+|+++++++++.+..++++||++|+..+++++... +++ +
T Consensus 27 ~~p~v~~ai~~~~~~----~~~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~-----------g~~~v 91 (359)
T 3pj0_A 27 VLTEALQNIDDNLES----DIYGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADR-----------KENRR 91 (359)
T ss_dssp HHHHHTTTSCTTCBC----CBTTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHH-----------HTCCE
T ss_pred CCHHHHHHHHhhccc----CcccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhc-----------CCCcE
Confidence 467777777763322 122345668899999999999777788899999999999987642 344 6
Q ss_pred EEEcCCccCChhh--hh-hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHH
Q 013008 194 VSFTNSFHGRTMG--AL-ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (451)
Q Consensus 194 i~~~~~yhg~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~ 270 (451)
|+.++.+|.+... .. ...+..... .+. .+. .-|+++|+++ .+++++|+++++++++|+.+++.++++
T Consensus 92 vi~~~~~~~~~~~~~~~~~~~g~~~~~---v~~-~~~----~~d~~~l~~~--~~~~~~v~~~~p~n~~~G~~~~~~~l~ 161 (359)
T 3pj0_A 92 VAYHPLSHLEIHEQDGLKELQQITPLL---LGT-ANQ----LLTIDDIKSL--REPVSSVLIELPQREIGGQLPAFEELE 161 (359)
T ss_dssp EEECTTCHHHHSSTTHHHHHHCCEEEE---CSC-TTS----CCCHHHHHTC--SSCCSEEEEESSBGGGTSBCCCHHHHH
T ss_pred EEEeccceeeehhcchHHHhcCceEEe---cCC-cCC----CcCHHHHHhc--cCCceEEEEEecccCCCcccCCHHHHH
Confidence 7777666654322 11 112211111 011 010 1288999988 346788888877666544678999999
Q ss_pred HHHHHHHHhCCEEEEeccccCCC--cccccccccccCCCccee--eecccccCCcccccccccHHHHhhccCC--Ccc-C
Q 013008 271 FLRDACDDAGALLVFDEVQCGLG--RTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINYG--DHG-S 343 (451)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~tg~g--r~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~--~~~-~ 343 (451)
+|+++|++||++||+||+|..+. ..|.. ...+....|++ ++||+++++.. |++++++++++.+... ... .
T Consensus 162 ~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~~~ 238 (359)
T 3pj0_A 162 KISEYCHEQGISLHLDGARLWEITPFYQKS--AEEICALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYGGD 238 (359)
T ss_dssp HHHHHHHHHTCEEEEEETTCGGGHHHHTCC--HHHHHTTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCEEEEECcchhcchhhhCCC--HHHhhccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999975321 11111 11111234555 78999876433 7778899998887531 112 2
Q ss_pred CCCCcHHHHHHHHHHHHHhc-C-hHHHHH------HHhCCCCccee--cccceeEEEEecC----ChHHHHHHHHHCCce
Q 013008 344 TFAGSPLVCNAAIAVLDKIS-N-PAFLAS------KLARNPHVKDV--RGLGLIIGIEFDV----SATPVVDACRDSGLL 409 (451)
Q Consensus 344 t~~~~~~~~aaa~aal~~~~-~-~~~~~~------~~~~~~~~~~v--~g~G~~~~~~~~~----~~~~~~~~l~~~Gv~ 409 (451)
++..++.+ +++.++++... . ....++ .++++|.+... ...+.++++.+.. ....+.+.|.++||+
T Consensus 239 ~~~~~~~~-~a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~ 317 (359)
T 3pj0_A 239 LISLYPYI-LSADYYFEKRIGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVG 317 (359)
T ss_dssp CSCCHHHH-HHHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEE
T ss_pred cchhHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcE
Confidence 33344444 44445665432 1 111111 34455544432 3556677777743 246788899999999
Q ss_pred eeecCC-----CCEEEEeCCC---CCCHHHHHHHHHHHHHH
Q 013008 410 VLTAGK-----GNVVRLVPPL---IISEQELDQAVEILCKT 442 (451)
Q Consensus 410 ~~~~~~-----~~~iri~~~~---~~t~e~i~~~l~~l~~~ 442 (451)
+.|+.. ..++|+++.. ..+.|++++++++|.++
T Consensus 318 v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 318 ISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp CCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 988631 1467876543 36899999999998875
No 170
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.90 E-value=7e-23 Score=202.54 Aligned_cols=285 Identities=15% Similarity=0.164 Sum_probs=189.9
Q ss_pred HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcC
Q 013008 119 WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTN 198 (451)
Q Consensus 119 v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~ 198 (451)
+.+++.+.+... .+++.+...+++++++++++.+++++++||++|++.+++.+. . .++++|++.++
T Consensus 21 ~~~~~~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~--~--------~~gd~v~~~~~ 86 (374)
T 3uwc_A 21 YLNDLREFIKTA----DFTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLN--I--------GAGDEVITCAN 86 (374)
T ss_dssp HHHHHHHHHHHT----CCSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEEESS
T ss_pred HHHHHHHHHHcC----CcccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCCCEEEECCC
Confidence 667776666543 234566789999999999998899999999999999999762 1 25889999999
Q ss_pred CccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHH
Q 013008 199 SFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (451)
Q Consensus 199 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~ 273 (451)
+||+........+. .+..++.+ |+++|++.+++ ++++|+ |.+ +.|...+ +++|.
T Consensus 87 ~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~--~~n-~~G~~~~----~~~i~ 145 (374)
T 3uwc_A 87 TFIASVGAIVQAGA-------------TPVLVDSENGYVIDPEKIEAAITD-KTKAIM--PVH-YTGNIAD----MPALA 145 (374)
T ss_dssp SCHHHHHHHHHTTC-------------EEEEECBCTTSSBCGGGTGGGCCT-TEEEEC--CBC-GGGCCCC----HHHHH
T ss_pred ccHHHHHHHHHcCC-------------EEEEEecCCCCCcCHHHHHHhCCC-CceEEE--EeC-CcCCcCC----HHHHH
Confidence 99987644332221 12223332 78899999875 567776 444 4566555 99999
Q ss_pred HHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec----ccccC-Cccccccccc-HHHHhhccCC--------
Q 013008 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAG-GLPIGAALVT-EKVASAINYG-------- 339 (451)
Q Consensus 274 ~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s----K~lg~-G~~iG~v~~~-~~i~~~~~~~-------- 339 (451)
++|++||+++|+||+|+.+.. +.....+..+|++++| |.+++ |. +|+++++ +++++.+...
T Consensus 146 ~~~~~~~~~li~D~~~~~g~~----~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 220 (374)
T 3uwc_A 146 KIAKKHNLHIVEDACQTILGR----INDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINR 220 (374)
T ss_dssp HHHHHTTCEEEEECTTCTTCE----ETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEET
T ss_pred HHHHHcCCEEEEeCCCccCce----eCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCcccc
Confidence 999999999999999973322 2233445557888877 99987 65 7777765 4665544321
Q ss_pred ----CccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------HH---hCCCC-ccee-ccc---ce--eEEEEecCChHH
Q 013008 340 ----DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------KL---ARNPH-VKDV-RGL---GL--IIGIEFDVSATP 398 (451)
Q Consensus 340 ----~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------~~---~~~~~-~~~v-~g~---G~--~~~~~~~~~~~~ 398 (451)
..+.++..+++.++++...++.++ ++.++ +. +.++. +... ... .. .+.+.. .+..+
T Consensus 221 ~~~~~~~~~~~~~~~~aa~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 297 (374)
T 3uwc_A 221 DVCVEYGINCRMDTIQAVIANRLMNQLE--TITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV-KYRDQ 297 (374)
T ss_dssp TEESSCCCBCBCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE-TTHHH
T ss_pred CccccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc-CCHHH
Confidence 112334456777766665544322 12221 22 22332 2111 011 11 122222 35778
Q ss_pred HHHHHHHCCceeeecCC--------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 399 VVDACRDSGLLVLTAGK--------------------------GNVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 399 ~~~~l~~~Gv~~~~~~~--------------------------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
+.+.|.++||.+.++.. .+.+|+.++..+|+|||++++++|++++++.
T Consensus 298 l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 298 LFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp HHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999998876530 0578999999999999999999999998753
No 171
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.90 E-value=4.5e-22 Score=196.60 Aligned_cols=298 Identities=14% Similarity=0.126 Sum_probs=195.1
Q ss_pred CCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceE
Q 013008 114 HGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEF 193 (451)
Q Consensus 114 ~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~i 193 (451)
..+|++++++.++++.... .+.....++++.|+++++.+++++++||++|+..++++++.+. .++++|
T Consensus 10 ~~~~~v~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~--------~~gd~V 77 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSKQL----TQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFS--------ADRNEI 77 (375)
T ss_dssp CCCHHHHHHHHHHHTSSCC----SSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCC--------TTSCEE
T ss_pred CCCHHHHHHHHHHHHcCcc----cCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccC--------CCCCEE
Confidence 3689999999998875321 2345678999999999998899999999999999999762101 158899
Q ss_pred EEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHH
Q 013008 194 VSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (451)
Q Consensus 194 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~ 273 (451)
++.+++||+........+.... . .+..++. ..|+++|++.+++ ++++|++... +|.+.+ +++|.
T Consensus 78 l~~~~~~~~~~~~~~~~g~~~~-~---~~~~~~~----~~d~~~l~~~i~~-~~~~v~~~~~---tG~~~~----l~~i~ 141 (375)
T 2fnu_A 78 ITTPISFVATANMLLESGYTPV-F---AGIKNDG----NIDELALEKLINE-RTKAIVSVDY---AGKSVE----VESVQ 141 (375)
T ss_dssp EECSSSCTHHHHHHHHTTCEEE-E---CCBCTTS----SBCGGGSGGGCCT-TEEEEEEECG---GGCCCC----HHHHH
T ss_pred EECCCccHhHHHHHHHCCCEEE-E---eccCCCC----CCCHHHHHhhcCc-CceEEEEeCC---cCCccC----HHHHH
Confidence 9999999987654433221111 1 1111111 1278889988875 5666554443 566655 89999
Q ss_pred HHHHHhCCEEEEeccccCCCcccccccccccCC--Ccceeeec--ccccCCcccccccc-c-HHHHhhccCCC-------
Q 013008 274 DACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI--FPDIMTLA--KPLAGGLPIGAALV-T-EKVASAINYGD------- 340 (451)
Q Consensus 274 ~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~--~pdi~t~s--K~lg~G~~iG~v~~-~-~~i~~~~~~~~------- 340 (451)
++|++||+++|+||+|+. |.... ....+. ..++.++| |.+++| +|++++ + +++++.+....
T Consensus 142 ~l~~~~~~~li~D~a~~~-~~~~~---~~~~~~~~~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (375)
T 2fnu_A 142 KLCKKHSLSFLSDSSHAL-GSEYQ---NKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKLFRSHGMLKK 215 (375)
T ss_dssp HHHHHHTCEEEEECTTCT-TCEET---TEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTTEEES
T ss_pred HHHHHcCCEEEEECcccc-CCeEC---CeeccccCCeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHHHHhcCCccc
Confidence 999999999999999963 32211 111222 24455788 999654 677776 3 67766553211
Q ss_pred ---------ccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceecc------cceeEEEEecC-
Q 013008 341 ---------HGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRG------LGLIIGIEFDV- 394 (451)
Q Consensus 341 ---------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g------~G~~~~~~~~~- 394 (451)
.+.++..+++.++++...++.++ ...++ .++.+|.+..... .+.++++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (375)
T 2fnu_A 216 DFFEGEVKSIGHNFRLNEIQSALGLSQLKKAP--FLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK 293 (375)
T ss_dssp SSSCEEESSCCCBCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcc
Confidence 12223566777766665544332 11111 3344553332222 23455666642
Q ss_pred ---ChHHHHHHHHHCCceeeec----C-------------C-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 395 ---SATPVVDACRDSGLLVLTA----G-------------K-------GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 395 ---~~~~~~~~l~~~Gv~~~~~----~-------------~-------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
...++.+.|.++||.+... . . .+.+|++++..+|++|+++++++|++++++++
T Consensus 294 ~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~ 373 (375)
T 2fnu_A 294 FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESFK 373 (375)
T ss_dssp GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5678999999999988721 0 0 15699998888999999999999999987754
No 172
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.89 E-value=3.2e-23 Score=207.82 Aligned_cols=317 Identities=9% Similarity=0.044 Sum_probs=195.2
Q ss_pred CEEEeeccCcccccCC-CCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhcc-C-------CCeEE--ecCCHHH
Q 013008 98 REYLDLSSGIAVNALG-HGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACS-F-------ADRVF--FSNTGTE 166 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-------~e~v~--~~~sG~e 166 (451)
..+|||..|.+ ++ ..+|.+.+++.++.....+. +.......+|.+.+++++ + .+++. .+++|++
T Consensus 41 ~~~i~l~~g~~---~d~~~~~~v~~a~~~a~~~~~~~--y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~g 115 (409)
T 4eu1_A 41 KRKVNLSIGVY---RDDADQPFVLECVKQATLGTNMD--YAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTG 115 (409)
T ss_dssp SSCEECCCSSC---CCTTSCCCCCHHHHTCCCCSCCC--CCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHH
T ss_pred cCceeeeeeEE---ECCCCCEeecHHHHhcCcccccc--CCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchH
Confidence 45789988875 22 35677888887763222121 112222345555555543 3 45674 4999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--C
Q 013008 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--P 244 (451)
Q Consensus 167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~ 244 (451)
|++.+..+++.++. ++|+|++.+|+|+++.......+.. ....+... ..+.. .|+++|++.++ +
T Consensus 116 a~~~~~~~~~~~~~--------~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~~~~~~-~~~~~----~d~~~l~~~l~~~~ 181 (409)
T 4eu1_A 116 ALRIGGDLLNRFVA--------NCNRIYGPDVGYPNHESIFAKAGME-LTPYSYYD-PATKG----LNLAGMLECLDKAP 181 (409)
T ss_dssp HHHHHHHHGGGTSS--------SCCEEEEESSCCTHHHHHHHHTTCE-EEEECCEE-TTTTE----ECHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcC--------CCCEEEEeCCCcHhHHHHHHHcCCe-EEEEEeec-CcCCc----CcHHHHHHHHHhCC
Confidence 99998877665543 5799999999998876544332221 11100000 01111 18999999986 3
Q ss_pred CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---ccccc-ccCCCcce---eeecccc
Q 013008 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHE-HYGIFPDI---MTLAKPL 317 (451)
Q Consensus 245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~-~~~~~pdi---~t~sK~l 317 (451)
...+++++...++++| .+++.+.+++|.++|++||+++|+||+|.+|++.+. ..... ..+..+++ .+|||.+
T Consensus 182 ~~~~~i~~~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 260 (409)
T 4eu1_A 182 EGSVILVHACAHNPTG-VDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNF 260 (409)
T ss_dssp TTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTS
T ss_pred CCcEEEEECCCCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccc
Confidence 3455555443344555 467899999999999999999999999999876552 12222 22444554 3899999
Q ss_pred c-CCcccccc---cccHH----HHhhccCCCccCCCCCcHHHHHHHHHHHHHhc--------ChHHHHH----------H
Q 013008 318 A-GGLPIGAA---LVTEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDKIS--------NPAFLAS----------K 371 (451)
Q Consensus 318 g-~G~~iG~v---~~~~~----i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--------~~~~~~~----------~ 371 (451)
+ .|+|+||+ +++++ +++.+.......+++.++++++++.++|+... -+...++ .
T Consensus 261 g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (409)
T 4eu1_A 261 GLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE 340 (409)
T ss_dssp SCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 69999995 66777 55555433334556677888888888876310 0111111 1
Q ss_pred HhCCC--C-cceecc-cceeEEEEecCChHHHHHHHH-HCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 372 LARNP--H-VKDVRG-LGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 372 ~~~~~--~-~~~v~g-~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
+++++ . +....+ .|++.++.+ . .+++..++ ++||++.|+ .|++++ .++++++++++++|++++
T Consensus 341 L~~~g~~~~~~~~~~~~~~~~~~~~--~-~~~~~~ll~~~gv~v~p~-----~Ri~~~-~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 341 LKACGSVHDWSHIERQVGMMAYTGL--T-REQVELLRSEYHIYMTLN-----GRAAVS-GLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp HHHTTCCSCCHHHHHSCSSEEECCC--C-HHHHHHHHHHHCEECCTT-----CEEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred HHhcCCCCCcceecCCceEEEEeCC--C-HHHHHHHHHcCCEEEcCC-----CEEEEE-ecCHhhHHHHHHHHHHHh
Confidence 22222 1 222233 345555433 2 35566666 569999875 377765 457788999999998875
No 173
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.89 E-value=7.1e-22 Score=196.59 Aligned_cols=292 Identities=14% Similarity=0.086 Sum_probs=198.7
Q ss_pred CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 013008 116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195 (451)
Q Consensus 116 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~ 195 (451)
+|++.+++.+++++..+ .+.....++++.++++++.+.+++++||++|++.+++++. . .++++|++
T Consensus 19 ~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~--~--------~~gd~Vl~ 84 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGWI----TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALG--I--------GEGDEVIT 84 (393)
T ss_dssp CHHHHHHHHHHHHHTCC----SSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEE
T ss_pred CHHHHHHHHHHHhcCCc----CCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcC--C--------CCCCEEEe
Confidence 48889999998876422 2456688999999999998899999999999999999762 1 15889999
Q ss_pred EcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHH
Q 013008 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA 275 (451)
Q Consensus 196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l 275 (451)
.+++|++..... ...|..... .+..++.. ..|+++|++++++ ++++|++++. .|...+ +++|.++
T Consensus 85 ~~~~~~~~~~~~-~~~g~~~~~---v~~~~~~~---~~d~~~l~~~l~~-~~~~v~~~~~---~G~~~~----~~~i~~l 149 (393)
T 1mdo_A 85 PSMTWVSTLNMI-VLLGANPVM---VDVDRDTL---MVTPEHIEAAITP-QTKAIIPVHY---AGAPAD----LDAIYAL 149 (393)
T ss_dssp ESSSCHHHHHHH-HHTTCEEEE---ECBCTTTC---CBCHHHHHHHCCT-TEEEECCBCG---GGCCCC----HHHHHHH
T ss_pred CCCccHhHHHHH-HHCCCEEEE---EeccCCcC---CCCHHHHHHhcCC-CceEEEEeCC---CCCcCC----HHHHHHH
Confidence 999999865433 222221111 11111100 1289999999975 6788887763 344444 9999999
Q ss_pred HHHhCCEEEEecccc-CCCcccccccccccCCCcceeeec----ccccCCccccccccc-HHHHhhccCCCc-c------
Q 013008 276 CDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYGDH-G------ 342 (451)
Q Consensus 276 ~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~~~-~------ 342 (451)
|++||+++|+||+|+ |+...+.. ++. +|++++| |.+++| ++|+++++ +++++.+..... +
T Consensus 150 ~~~~~~~li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~ 222 (393)
T 1mdo_A 150 GERYGIPVIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAW 222 (393)
T ss_dssp HHHHTCCBCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC--
T ss_pred HHHcCCeEEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccch
Confidence 999999999999997 33233321 232 7887666 888765 78999886 788776532110 0
Q ss_pred -----------------CCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcce-------ecccceeE
Q 013008 343 -----------------STFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKD-------VRGLGLII 388 (451)
Q Consensus 343 -----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~-------v~g~G~~~ 388 (451)
..+..+++.++++.+.++.++ ++.++ .++.++ +.. .++.+.++
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~ 299 (393)
T 1mdo_A 223 DRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLF 299 (393)
T ss_dssp ---------CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCE
T ss_pred hhhcccccccccccccCccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEE
Confidence 013357787777777666432 11111 233444 221 12345577
Q ss_pred EEEec-----CChHHHHHHHHHCCceeeecCC------------------------CCEEEEeCCCCCCHHHHHHHHHHH
Q 013008 389 GIEFD-----VSATPVVDACRDSGLLVLTAGK------------------------GNVVRLVPPLIISEQELDQAVEIL 439 (451)
Q Consensus 389 ~~~~~-----~~~~~~~~~l~~~Gv~~~~~~~------------------------~~~iri~~~~~~t~e~i~~~l~~l 439 (451)
++.+. .+..++.+.|.++||.+.++.. ...+|+.+...+|++|+++++++|
T Consensus 300 ~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l 379 (393)
T 1mdo_A 300 IIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITAL 379 (393)
T ss_dssp EEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred EEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHH
Confidence 88774 3677899999999998876431 136999888889999999999999
Q ss_pred HHHHHHH
Q 013008 440 CKTLPVL 446 (451)
Q Consensus 440 ~~~l~~~ 446 (451)
+++++..
T Consensus 380 ~~~~~~~ 386 (393)
T 1mdo_A 380 HQIAGQG 386 (393)
T ss_dssp HHHHC--
T ss_pred HHHHhcC
Confidence 9987643
No 174
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.89 E-value=2.5e-21 Score=195.07 Aligned_cols=303 Identities=17% Similarity=0.125 Sum_probs=198.4
Q ss_pred eeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCC-CHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhh
Q 013008 102 DLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYY-SIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQR 180 (451)
Q Consensus 102 D~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~ 180 (451)
||..+.. .++ .+|++.+++.++++... +.. .....++++.++++++.+++++++||++|+..+++++.
T Consensus 20 ~l~~~~p--~~~-~p~~~~~a~~~~~~~~~----y~~~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~---- 88 (424)
T 2po3_A 20 PLLVGRP--NRI-DRARLYERLDRALDSQW----LSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG---- 88 (424)
T ss_dssp CEETTCC--CCC-CHHHHHHHHHHHHHHTC----CSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT----
T ss_pred cccccCC--CCC-ChHHHHHHHHHHHhcCC----cccCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC----
Confidence 4544443 344 36789999998886531 122 46688999999999998999999999999999999764
Q ss_pred hcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCC
Q 013008 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEG 259 (451)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~ 259 (451)
++++|++.+++|++...... ..+..... .+..+ +.. -|+++|++.+++ ++++|++.+ ++
T Consensus 89 --------~gd~Vlv~~~~~~~~~~~~~-~~G~~~~~---v~~~~~~~~----~d~~~l~~~i~~-~~~~v~~~~---~t 148 (424)
T 2po3_A 89 --------LTGEVIMPSMTFAATPHALR-WIGLTPVF---ADIDPDTGN----LDPDQVAAAVTP-RTSAVVGVH---LW 148 (424)
T ss_dssp --------CCSEEEEESSSCTHHHHHHH-HTTCEEEE---ECBCTTTSS----BCHHHHGGGCCT-TEEEEEEEC---GG
T ss_pred --------CCCEEEECCCccHHHHHHHH-HcCCEEEE---EecCCCcCC----cCHHHHHHhhCc-CCcEEEEEC---CC
Confidence 36899999999998765332 22211111 11111 100 189999999975 577777643 34
Q ss_pred CccccCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccccccccccCCCcceee--ec--ccccCCccccccccc-HHHH
Q 013008 260 GIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMT--LA--KPLAGGLPIGAALVT-EKVA 333 (451)
Q Consensus 260 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pdi~t--~s--K~lg~G~~iG~v~~~-~~i~ 333 (451)
|...+ +++|.++|++||++||+||+|+ |+.+.|.. .+..+|+++ || |++++ +++|+++++ ++++
T Consensus 149 G~~~~----l~~i~~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~ 218 (424)
T 2po3_A 149 GRPCA----ADQLRKVADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA-FEGGAVVTDDADLA 218 (424)
T ss_dssp GCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHH
T ss_pred CCcCC----HHHHHHHHHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC-CCCeEEEeCCHHHH
Confidence 54444 9999999999999999999998 66544432 122246664 44 77766 699999998 7887
Q ss_pred hhccCC----C--------ccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------H---HhCCCCcceec-ccc-----
Q 013008 334 SAINYG----D--------HGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------K---LARNPHVKDVR-GLG----- 385 (451)
Q Consensus 334 ~~~~~~----~--------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------~---~~~~~~~~~v~-g~G----- 385 (451)
+.+... . .+.++..+++.+++++..++.++. +.++ + ++.++.+..+. ..|
T Consensus 219 ~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~--~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~ 296 (424)
T 2po3_A 219 ARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPE--VIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNH 296 (424)
T ss_dssp HHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCC
T ss_pred HHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccCCCccccCCCCCCcccc
Confidence 765421 0 011223456777776665554321 2221 2 23334333222 222
Q ss_pred eeEEEEec-----CChHHHHHHHHHCCceeeecCC-C----------------C-------EEEEeCCCCCCHHHHHHHH
Q 013008 386 LIIGIEFD-----VSATPVVDACRDSGLLVLTAGK-G----------------N-------VVRLVPPLIISEQELDQAV 436 (451)
Q Consensus 386 ~~~~~~~~-----~~~~~~~~~l~~~Gv~~~~~~~-~----------------~-------~iri~~~~~~t~e~i~~~l 436 (451)
.++.+.+. .+..++.+.|.++||.+.+... . + .+|+.+...++++|+++++
T Consensus 297 ~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~ 376 (424)
T 2po3_A 297 QYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVA 376 (424)
T ss_dssp CCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHH
T ss_pred EEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHH
Confidence 34446553 2577899999999999876211 0 1 1666656899999999999
Q ss_pred HHHHHHHHHHh
Q 013008 437 EILCKTLPVLD 447 (451)
Q Consensus 437 ~~l~~~l~~~~ 447 (451)
++|.+++++.+
T Consensus 377 ~~L~~~~~~~~ 387 (424)
T 2po3_A 377 DLLRLCATRGR 387 (424)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhH
Confidence 99999887654
No 175
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.89 E-value=1e-22 Score=201.76 Aligned_cols=298 Identities=13% Similarity=0.103 Sum_probs=191.6
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccC------CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSF------ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~ 188 (451)
.+|++.+++.+.... +. .........++.+++++.++ .+++++++||++|++.+++.+.....
T Consensus 16 ~~~~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~-------- 84 (385)
T 2bkw_A 16 LSGAVQKALDVPSLG--HT-SPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKA-------- 84 (385)
T ss_dssp CCHHHHHTTSCCCCC--TT-SHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTC--------
T ss_pred chHHHHHHHhccccc--cC-CHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCC--------
Confidence 467777776654322 11 00011124556677777664 37899999999999999997631001
Q ss_pred CCceEEEE-cCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC------CCHHHHHHhcCCCCeEEEEEccccCCCCc
Q 013008 189 PATEFVSF-TNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY------GNIEATRKLIQPGKTAAVFVEPIQGEGGI 261 (451)
Q Consensus 189 ~~~~ii~~-~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~aavi~ep~~~~~G~ 261 (451)
++++||++ .+.||..........+.. +..++. .|+++|+++++++++++|+++++++++|.
T Consensus 85 ~gd~vlv~~~~~~~~~~~~~~~~~g~~------------~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~ 152 (385)
T 2bkw_A 85 PNKNVLVVSTGTFSDRFADCLRSYGAQ------------VDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAV 152 (385)
T ss_dssp SCCEEEEECSSHHHHHHHHHHHHTTCE------------EEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTE
T ss_pred CCCeEEEEcCCcchHHHHHHHHHcCCc------------eEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCe
Confidence 57888888 556666532222222211 122222 28999999986435778888888888888
Q ss_pred cccCHHHHHHHHHHHHHh--CCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcccccccccHHHHh-hc
Q 013008 262 YSATKEFLQFLRDACDDA--GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVAS-AI 336 (451)
Q Consensus 262 ~~~~~~~l~~l~~l~~~~--g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~-~~ 336 (451)
+.+ +++|.++|++| |+++|+||+|+ +|.. .+....+ .+|++ +++|+++++.++|++++++++++ .+
T Consensus 153 ~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l 223 (385)
T 2bkw_A 153 LSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDYAL 223 (385)
T ss_dssp ECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHHHT
T ss_pred EcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccccc--CceEEEecCccccccCCcceEEEEcHHHHHHHH
Confidence 776 89999999999 99999999996 4322 1122222 35665 45799876555699999988776 44
Q ss_pred cC----------------------CC--ccC-CCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HH-hCCCC
Q 013008 337 NY----------------------GD--HGS-TFAGSPLVCNAAIAVLDKISNP---AFLAS----------KL-ARNPH 377 (451)
Q Consensus 337 ~~----------------------~~--~~~-t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~-~~~~~ 377 (451)
.. .. ... .++.++.+++++.++++.+.+. ...++ .+ +++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g- 302 (385)
T 2bkw_A 224 NDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQ- 302 (385)
T ss_dssp CHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred hhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 20 00 011 1346778888887888765322 11221 23 3332
Q ss_pred cceec------ccceeEEEEecCChHHHHHHHHHCCceeeecCC----CCEEEEe-CC---CCCCHHHHHHHHHHHHHHH
Q 013008 378 VKDVR------GLGLIIGIEFDVSATPVVDACRDSGLLVLTAGK----GNVVRLV-PP---LIISEQELDQAVEILCKTL 443 (451)
Q Consensus 378 ~~~v~------g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~~iri~-~~---~~~t~e~i~~~l~~l~~~l 443 (451)
+..+. ..+.++++.+.. ..++.+.|.++||.+.++.. .+.+|++ ++ +.+++|++++++++|++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~ 381 (385)
T 2bkw_A 303 LTSVSRYPSNMSAHGLTAVYVAD-PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLAL 381 (385)
T ss_dssp CEESSCSSSTTBCSSCEEEECSC-HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHT
T ss_pred ceecccCcccccCCceEEEecCC-HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHH
Confidence 22222 246778887743 77899999999999987532 3679997 44 3579999999999999987
Q ss_pred HHH
Q 013008 444 PVL 446 (451)
Q Consensus 444 ~~~ 446 (451)
+++
T Consensus 382 ~~~ 384 (385)
T 2bkw_A 382 QRK 384 (385)
T ss_dssp TC-
T ss_pred Hhc
Confidence 654
No 176
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.89 E-value=1.1e-22 Score=206.55 Aligned_cols=322 Identities=15% Similarity=0.111 Sum_probs=189.8
Q ss_pred EEeeccCcccccCCC--CCHHHHHHHHHHHhhcccccCCC-CCHHHHHHHHHHhhcc-C-------CCeEEe--cCCHHH
Q 013008 100 YLDLSSGIAVNALGH--GDADWIKAVVDQANVLTHVSNMY-YSIPQIELAKRLVACS-F-------ADRVFF--SNTGTE 166 (451)
Q Consensus 100 ~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~-~-------~e~v~~--~~sG~e 166 (451)
.|||..|.+...-++ -.+.+.+++.+..++.......| +.....++.+.+++++ + .++|++ |+||++
T Consensus 51 ~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~ 130 (448)
T 3meb_A 51 KVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTG 130 (448)
T ss_dssp CEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred eEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHH
Confidence 577777765221222 12445554443331000111112 2222445556666554 4 368999 999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh---ccCCCCcCCCCcCC-CCC--eeEeeCCCHHHHHH
Q 013008 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEHYRSPFEPV-MPG--VNFVEYGNIEATRK 240 (451)
Q Consensus 167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~~~~~~~~~-~~~--~~~~~~~d~~~le~ 240 (451)
|+..++.++..+. ++++|++.+|+|+++...... ..+..... .+. .++ .. -|+++|++
T Consensus 131 al~l~~~~~~~~~---------~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~---~~~~~~~~~~~----~d~e~l~~ 194 (448)
T 3meb_A 131 SLHIGFEFLHLWM---------PKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKE---YTYLRKDGELE----IDFSNTKK 194 (448)
T ss_dssp HHHHHHHHHHHHC---------TTCCEEEESSCCTHHHHHHHHHHCTTTSCCEE---ECCBCTTSCSS----BCHHHHHH
T ss_pred HHHHHHHHHHHhC---------CCCEEEECCCCCHhHHHHHHhhHHhCCCeEEE---EeccccccCCC----cCHHHHHH
Confidence 9998765443332 588999999999887654430 22221111 111 111 11 18999999
Q ss_pred hcCC--CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---ccccccc-CCCcc---ee
Q 013008 241 LIQP--GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHEHY-GIFPD---IM 311 (451)
Q Consensus 241 ~l~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~~~-~~~pd---i~ 311 (451)
.++. .+.+++++...++++|. .++.+.+++|.++|++||+++|+||+|.+|++.+. .+....+ +..++ +.
T Consensus 195 ~l~~~~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (448)
T 3meb_A 195 DIQSAPEKSIFLFHACAHNPSGI-DFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQ 273 (448)
T ss_dssp HHHHSCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEE
T ss_pred HHHhCCCCcEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEe
Confidence 9862 34555555544555554 57899999999999999999999999999876541 1222221 22344 45
Q ss_pred eeccccc-CCcccccc--cc---------cH----HHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc-ChHH-------
Q 013008 312 TLAKPLA-GGLPIGAA--LV---------TE----KVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-NPAF------- 367 (451)
Q Consensus 312 t~sK~lg-~G~~iG~v--~~---------~~----~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~------- 367 (451)
++||.++ .|+|+||+ ++ ++ ++++.+.......+.+.+.+++.++.++|+... ...|
T Consensus 274 S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~ 353 (448)
T 3meb_A 274 SFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEM 353 (448)
T ss_dssp ECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred cccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 8999999 59999997 55 45 566555432334445567788887777764210 0011
Q ss_pred HHH----------HHhCC--CC------cceec-ccceeEEEEecCChHHHHHHHH-HCCceeeecCCCCEEEEeCCCCC
Q 013008 368 LAS----------KLARN--PH------VKDVR-GLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGKGNVVRLVPPLII 427 (451)
Q Consensus 368 ~~~----------~~~~~--~~------~~~v~-g~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~~~~iri~~~~~~ 427 (451)
.++ .++.+ +. +.... ..|++.+..+ ..+++..|+ ++||++.|+. .||++. .+
T Consensus 354 ~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gV~v~~G~----gRis~a-~~ 425 (448)
T 3meb_A 354 SARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGL---TPEHVDYLKEKWSIYLVKAG----GRMSMC-GL 425 (448)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCC---CHHHHHHHHHHHCEEECSGG----GEEEGG-GC
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCC---CHHHHHHHHHhCCEEEeCCC----cEEEEe-cC
Confidence 111 12222 22 22222 3355555444 245666664 5799998853 288764 44
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 013008 428 SEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 428 t~e~i~~~l~~l~~~l~~~ 446 (451)
++++|++++++|.++++++
T Consensus 426 ~~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 426 TESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp CTTTHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 7788999999999998753
No 177
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.89 E-value=1e-21 Score=201.83 Aligned_cols=310 Identities=8% Similarity=-0.001 Sum_probs=196.0
Q ss_pred CCHHHHHHHHHHHhhccc------ccCCCCCHHHHHHHHHHhhccC-----CCeEEecCCHHHHHHHHHHHHHHHhhhcC
Q 013008 115 GDADWIKAVVDQANVLTH------VSNMYYSIPQIELAKRLVACSF-----ADRVFFSNTGTEANEAAIKFARKFQRHSN 183 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~~~-----~e~v~~~~sG~eA~~~al~~a~~~~~~~~ 183 (451)
.+..+.+++.+++++... ....+....+.++++++.++.+ .++|++|+|+++|+..+++++... +
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~----g 177 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSG----G 177 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCC----C
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCC----C
Confidence 356677777777775321 1111223447778888876653 689999999999999999966510 0
Q ss_pred CCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-------CCHHHHHHhcCCC----CeEEEEE
Q 013008 184 PDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-------GNIEATRKLIQPG----KTAAVFV 252 (451)
Q Consensus 184 ~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~----~~aavi~ 252 (451)
.++++.|++.+|+|+.+.......+.. +..++. -|+++|++++++. ++++|++
T Consensus 178 ---d~~~d~Vlv~~p~y~~~~~~~~~~g~~-------------~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l 241 (498)
T 3ihj_A 178 ---GKSRTGVMIPIPQYPLYSAVISELDAI-------------QVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCI 241 (498)
T ss_dssp ---GGGSEEEEEEESCCTHHHHHHHHTTCE-------------EEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEE
T ss_pred ---CCCCCEEEEeCCCchhHHHHHHHcCCE-------------EEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEE
Confidence 001358999999998776444332211 111221 1899999998631 3666665
Q ss_pred ccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc--ccccccc--CC---------Ccceeeecccc-c
Q 013008 253 EPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY--LWAHEHY--GI---------FPDIMTLAKPL-A 318 (451)
Q Consensus 253 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~--~~~~~~~--~~---------~pdi~t~sK~l-g 318 (451)
...++++|. +++.+.+++|+++|++||++||+||+|..+.+.+. ...+... +. ..-+.+|||++ |
T Consensus 242 ~np~NPTG~-v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G 320 (498)
T 3ihj_A 242 INPGNPTGQ-VQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMG 320 (498)
T ss_dssp ESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTC
T ss_pred ECCCCCCCC-cCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEecccccccc
Confidence 544555554 67899999999999999999999999987644332 1111110 01 11234889999 4
Q ss_pred -CCccccccc---ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHH-----------hcC-hH----HHHH------HH
Q 013008 319 -GGLPIGAAL---VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDK-----------ISN-PA----FLAS------KL 372 (451)
Q Consensus 319 -~G~~iG~v~---~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----------~~~-~~----~~~~------~~ 372 (451)
.|+|+||++ .++++++.+.... ....+.++++++++.++++. ++. .. +.++ .+
T Consensus 321 ~~G~R~G~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L 399 (498)
T 3ihj_A 321 ECGYRGGYMEVINLHPEIKGQLVKLL-SVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLF 399 (498)
T ss_dssp CSSSCCEEEEEESCCHHHHHHHHHHH-HHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceEEEEEecCCHHHHHHHHHHH-hccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999998 6889888875432 23455678888777666531 110 11 1111 33
Q ss_pred hCCCCcceecccc-eeEEEEecC-------------ChHHH-HHH-HHHCCceeeecCC------CCEEEEeCCCCCCHH
Q 013008 373 ARNPHVKDVRGLG-LIIGIEFDV-------------SATPV-VDA-CRDSGLLVLTAGK------GNVVRLVPPLIISEQ 430 (451)
Q Consensus 373 ~~~~~~~~v~g~G-~~~~~~~~~-------------~~~~~-~~~-l~~~Gv~~~~~~~------~~~iri~~~~~~t~e 430 (451)
+++|.+....+.| +++++.++. ....+ +.. |.++||.+.|+.. .+.+|+++ ..+++
T Consensus 400 ~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~e 477 (498)
T 3ihj_A 400 NQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPVE 477 (498)
T ss_dssp HTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCHH
T ss_pred hcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCHH
Confidence 4566565555554 455545531 22333 444 4568999988521 24788876 58999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 013008 431 ELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 431 ~i~~~l~~l~~~l~~~~~ 448 (451)
++++++++|.++++++.+
T Consensus 478 ~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 478 KLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999987653
No 178
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.89 E-value=1.3e-22 Score=210.39 Aligned_cols=328 Identities=12% Similarity=0.027 Sum_probs=199.8
Q ss_pred EEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHh-hcc-------CCCeEEecCCHHHHHHHH
Q 013008 100 YLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLV-ACS-------FADRVFFSNTGTEANEAA 171 (451)
Q Consensus 100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~-------~~e~v~~~~sG~eA~~~a 171 (451)
++||..+. .++.+|.+.+++.+++....+....+......++++.+. +.. ..++|++++|+++|+..+
T Consensus 106 ~i~l~~g~----~~~~~~~~~~al~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~ 181 (546)
T 2zy4_A 106 SLSYVRDQ----LGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYI 181 (546)
T ss_dssp HHHHHHHT----SCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHH
T ss_pred hhecccCC----CCCCChHHHHHHHHhhhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHH
Confidence 56665553 356778888888887753222222234455666666543 322 147899999999999999
Q ss_pred HHHHH--HHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc-CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeE
Q 013008 172 IKFAR--KFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT-SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTA 248 (451)
Q Consensus 172 l~~a~--~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~a 248 (451)
++++. .+.. ++|.|++.+|+|+++...+.... +..... .+..++..+. .|+++|++++.. +++
T Consensus 182 ~~~l~~~~l~~--------~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~---v~~~~~~~~~--~d~~~l~~~~~~-~~k 247 (546)
T 2zy4_A 182 FESLKLNGLLK--------AGDKVAIGMPVFTPYIEIPELAQYALEEVA---INADPSLNWQ--YPDSELDKLKDP-AIK 247 (546)
T ss_dssp HHHHHHTTSSC--------TTCEEEEEESCCHHHHHHHHSTTSCCEEEE---EECBGGGTTB--CCHHHHGGGGST-TEE
T ss_pred HHHhhhhhcCC--------CCCEEEEeCCCCccHHHHHHHcCCCcEEEE---EecCcccCCC--CCHHHHHHhhCC-CCe
Confidence 98742 1222 68999999999999875532211 111000 0111100000 278999988754 566
Q ss_pred EEEEccccCCCCccccCHHHHHHHHHHH--HHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCccccc
Q 013008 249 AVFVEPIQGEGGIYSATKEFLQFLRDAC--DDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGA 325 (451)
Q Consensus 249 avi~ep~~~~~G~~~~~~~~l~~l~~l~--~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~ 325 (451)
+|+++..++++|. +.+.+.+++|.++| ++||++||+||+|.+|............+....+.+|||.+| .|+|+||
T Consensus 248 ~v~l~~p~NPtG~-~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~ 326 (546)
T 2zy4_A 248 IFFCVNPSNPPSV-KMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGV 326 (546)
T ss_dssp EEEEESSCSSSCB-CCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEE
T ss_pred EEEEECCCCCCCc-cCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEE
Confidence 6665555555564 67899999999999 889999999999998854222111111122334568999998 6999999
Q ss_pred ccccHH-HHhhccCC------------------------------------CccCCCCCcHHHHHHHH-H-HHHHhc-Ch
Q 013008 326 ALVTEK-VASAINYG------------------------------------DHGSTFAGSPLVCNAAI-A-VLDKIS-NP 365 (451)
Q Consensus 326 v~~~~~-i~~~~~~~------------------------------------~~~~t~~~~~~~~aaa~-a-al~~~~-~~ 365 (451)
++++++ +++.+... ....+.+.+.+.+.++. . ....++ .+
T Consensus 327 ~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~ 406 (546)
T 2zy4_A 327 VAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEAD 406 (546)
T ss_dssp EEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTC
T ss_pred EEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccH
Confidence 998875 66654210 01223455666665531 1 112222 23
Q ss_pred HHHHH-----------HHhCCCC-cc-eecccceeEEEEecC------------------Ch-HHHHHHHHHCCceeeec
Q 013008 366 AFLAS-----------KLARNPH-VK-DVRGLGLIIGIEFDV------------------SA-TPVVDACRDSGLLVLTA 413 (451)
Q Consensus 366 ~~~~~-----------~~~~~~~-~~-~v~g~G~~~~~~~~~------------------~~-~~~~~~l~~~Gv~~~~~ 413 (451)
.+.++ +.+.+.. +. .....|+++|+++.. .. ..+.+.|.++||.+.|+
T Consensus 407 ~~~~~~r~~~~~r~~~l~~~L~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG 486 (546)
T 2zy4_A 407 EYKHTLKQLIRRRETTLYRELGMPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPG 486 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTSSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEES
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCc
Confidence 33322 2222221 11 122346677887631 12 23556677889999987
Q ss_pred CC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 414 GK----GNVVRLVPPLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 414 ~~----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
.. .+++|+++. ..+++++++++++|++++++..
T Consensus 487 ~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 487 RGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp SCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHHH
Confidence 42 257999875 4589999999999999987754
No 179
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.89 E-value=8.9e-22 Score=197.80 Aligned_cols=315 Identities=16% Similarity=0.138 Sum_probs=181.1
Q ss_pred EEeeccCcccccCCCCCHHHHHHHHHHHh-hcccccC---CC----CCHHHHHHH-HHHhhccCCCeE-EecCCHHHHHH
Q 013008 100 YLDLSSGIAVNALGHGDADWIKAVVDQAN-VLTHVSN---MY----YSIPQIELA-KRLVACSFADRV-FFSNTGTEANE 169 (451)
Q Consensus 100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~---~~----~~~~~~~l~-~~l~~~~~~e~v-~~~~sG~eA~~ 169 (451)
.+++.++.. +.||+|++|+.+++. .+..++. .+ ..+...+++ +++++.++.+.+ ++++||++|++
T Consensus 34 ~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~ 108 (425)
T 3ecd_A 34 QVELIASEN-----IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANG 108 (425)
T ss_dssp SEECCTTCC-----CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred ceeeecccC-----CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHH
Confidence 456655433 348999999999884 3221111 11 112345555 667777887766 45999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCCh-hhhhh-ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCe
Q 013008 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRT-MGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKT 247 (451)
Q Consensus 170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 247 (451)
.+++++. .+++.|++.+++||+.. ..... ..+.. +.....+..++.. ..|+++|++++...++
T Consensus 109 ~al~~~~-----------~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~---~~d~~~l~~~i~~~~~ 173 (425)
T 3ecd_A 109 AVMLALA-----------KPGDTVLGMSLDAGGHLTHGAKPALSGKW-FNALQYGVSRDTM---LIDYDQVEALAQQHKP 173 (425)
T ss_dssp HHHHHHC-----------CTTCEEEEECC-------------------CEEEEECCCTTTS---SCCHHHHHHHHHHHCC
T ss_pred HHHHHcc-----------CCCCEEEEcccccccceecchhhhhcccc-eeeeecCCCcccC---ccCHHHHHHHHhhcCC
Confidence 9999764 26899999999998832 22111 11110 0000001111000 1289999999863356
Q ss_pred EEEEEc-cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcccccccccccCCCccee--eecccccCCccc
Q 013008 248 AAVFVE-PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPI 323 (451)
Q Consensus 248 aavi~e-p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~i 323 (451)
++|+++ |+++ ...+ +++|+++|++||++||+||+| .|+.+.|..... .. .+|++ ++||+++ |.++
T Consensus 174 ~~v~~~~~~~~---~~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l~-g~~~ 242 (425)
T 3ecd_A 174 SLIIAGFSAYP---RKLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VE-HAHVVTSTTHKTLR-GPRG 242 (425)
T ss_dssp SEEEEECSCCC---SCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GG-TCSEEEEESSGGGC-CCSC
T ss_pred cEEEEccccCC---CcCC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hh-cCcEEEecCCcccC-CCCc
Confidence 777777 4543 2233 899999999999999999996 444344432211 11 15665 5679994 5688
Q ss_pred cccccc-HHHHhhccCCCccC-CCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCCcceec--ccce
Q 013008 324 GAALVT-EKVASAINYGDHGS-TFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPHVKDVR--GLGL 386 (451)
Q Consensus 324 G~v~~~-~~i~~~~~~~~~~~-t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~~~~v~--g~G~ 386 (451)
|+++++ +++.+.+......+ +.+.++..++++.+++.....+ ++.++ .++... +..+. +.+.
T Consensus 243 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~ 321 (425)
T 3ecd_A 243 GFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGG-VDLVTGGTDNH 321 (425)
T ss_dssp EEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSS
T ss_pred EEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC-CeeccCCCCce
Confidence 999987 56777665322222 2233344444444444332222 22222 122222 22222 3567
Q ss_pred eEEEEec---CChHHHHHHHHHCCceee----ecC-----CCCEEEEeCCC----CCCHHHHHHHHHHHHHHHHHH
Q 013008 387 IIGIEFD---VSATPVVDACRDSGLLVL----TAG-----KGNVVRLVPPL----IISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 387 ~~~~~~~---~~~~~~~~~l~~~Gv~~~----~~~-----~~~~iri~~~~----~~t~e~i~~~l~~l~~~l~~~ 446 (451)
++++.+. .....+.+.|.++||.+. |+. ..+.+|+.++. .++++++++++++|++++++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 322 LLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp EEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 7788773 246678888888999998 331 12479998554 445999999999999999875
No 180
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.89 E-value=2.1e-22 Score=204.74 Aligned_cols=297 Identities=16% Similarity=0.153 Sum_probs=196.7
Q ss_pred CCCCHHHHHHHHHH----HhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008 113 GHGDADWIKAVVDQ----ANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188 (451)
Q Consensus 113 G~~~p~v~~a~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~ 188 (451)
|-.+|.|.+++... .+...+.+.....+...+++++++++++.+.+++++||++|+..+++++.
T Consensus 102 ~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~~~~------------ 169 (464)
T 1ibj_A 102 DAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTHLIK------------ 169 (464)
T ss_dssp CCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTSC------------
T ss_pred CCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhC------------
Confidence 33455666665432 12222323344566788999999999998899999999999988775221
Q ss_pred CCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHH
Q 013008 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEF 268 (451)
Q Consensus 189 ~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~ 268 (451)
++++||+.++.||++........ ......+..++.+|+++|++++++ ++++|+++++++++|.+.+
T Consensus 170 ~Gd~Vi~~~~~y~~~~~~~~~~~---------~~~G~~v~~v~~~d~~~l~~~i~~-~tk~v~l~~p~NptG~v~~---- 235 (464)
T 1ibj_A 170 NGEEIVAGDDVYGGSDRLLSQVV---------PRSGVVVKRVNTTKLDEVAAAIGP-QTKLVWLESPTNPRQQISD---- 235 (464)
T ss_dssp TTCEEEEESSCCHHHHHHHHHTS---------GGGTCEEEEECTTSHHHHHHHCCS-SEEEEEECSSCTTTCCCCC----
T ss_pred CCCEEEEECCCchhHHHHHHHHH---------HHcCCEEEEeCCCCHHHHHHHhcc-CceEEEEeCCCCCCCEeec----
Confidence 68999999999987642210000 011234566777899999999974 6899999999888888775
Q ss_pred HHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccC--Cccccccccc-HHHHhhccCCCccC
Q 013008 269 LQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG--GLPIGAALVT-EKVASAINYGDHGS 343 (451)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~--G~~iG~v~~~-~~i~~~~~~~~~~~ 343 (451)
+++|+++|++||+++|+||+|.. |.... ..+ + ..|++ +++|++++ |+++|+++++ +++++.+.......
T Consensus 236 l~~i~~la~~~gi~livDea~~~-g~~~~--~~~-~--~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~ 309 (464)
T 1ibj_A 236 IRKISEMAHAQGALVLVDNSIMS-PVLSR--PLE-L--GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSE 309 (464)
T ss_dssp HHHHHHHHHTTTCEEEEECTTTC-TTTCC--GGG-T--TCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEECCCcc-cccCC--hhh-c--CCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhc
Confidence 99999999999999999999963 21111 111 3 35665 68999986 7899999998 47877775332223
Q ss_pred CCCCcHHHHHHHHHHHHHhcC--h---HHHHH---HHhC--------------CCCcce----ecccceeEEEEecC--C
Q 013008 344 TFAGSPLVCNAAIAVLDKISN--P---AFLAS---KLAR--------------NPHVKD----VRGLGLIIGIEFDV--S 395 (451)
Q Consensus 344 t~~~~~~~~aaa~aal~~~~~--~---~~~~~---~~~~--------------~~~~~~----v~g~G~~~~~~~~~--~ 395 (451)
..+.+++.+.++.++|+.+.. + .+... .+++ +|.+.. .++.|.++++++.. .
T Consensus 310 g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~ 389 (464)
T 1ibj_A 310 GSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVAL 389 (464)
T ss_dssp TCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHH
T ss_pred CCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCHHH
Confidence 345578888888877653210 0 11111 2222 121111 12357788888842 1
Q ss_pred hHHHHHHHHHCCceeeecC-------------------------C-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 396 ATPVVDACRDSGLLVLTAG-------------------------K-GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 396 ~~~~~~~l~~~Gv~~~~~~-------------------------~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
...+.+.|...|+.+.++. . .+.+|+++.. |++++++++|++++++
T Consensus 390 ~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 390 SKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFKT 461 (464)
T ss_dssp HHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence 2346666655676665442 1 2579998776 8999999999999864
No 181
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.89 E-value=6.9e-22 Score=197.42 Aligned_cols=318 Identities=13% Similarity=0.090 Sum_probs=190.4
Q ss_pred EEeeccCcccccCCCC--CHHHHHHHHHHHhh-cccccC--CCCCHHHHHHHHHHhhccC----CCeEEe--cCCHHHHH
Q 013008 100 YLDLSSGIAVNALGHG--DADWIKAVVDQANV-LTHVSN--MYYSIPQIELAKRLVACSF----ADRVFF--SNTGTEAN 168 (451)
Q Consensus 100 ~iD~~~~~~~~~lG~~--~p~v~~a~~~~~~~-~~~~~~--~~~~~~~~~l~~~l~~~~~----~e~v~~--~~sG~eA~ 168 (451)
.|||..|.+....++. .|.+.+++.+.+.. ....+. .+..+.+.++++++.+..+ .++|++ |+||++|+
T Consensus 30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al 109 (401)
T 7aat_A 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL 109 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred ceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHH
Confidence 6888887763333432 35788888776653 111111 1122335566666655544 788877 99999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCC--CCeeEeeCCCHHHHHHhcC--C
Q 013008 169 EAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVM--PGVNFVEYGNIEATRKLIQ--P 244 (451)
Q Consensus 169 ~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~--~ 244 (451)
..++++++.+++ ++++|++.+|+|+++.......+. .... .+.. .+... |++.+++.++ .
T Consensus 110 ~~~~~~l~~~~~--------~gd~Vlv~~p~~~~~~~~~~~~g~-~~~~---~~~~~~~~~~~----d~~~l~~~l~~~~ 173 (401)
T 7aat_A 110 RVGANFLQRFFK--------FSRDVYLPKPSWGNHTPIFRDAGL-QLQA---YRYYDPKTCSL----DFTGAMEDISKIP 173 (401)
T ss_dssp HHHHHHHHHHCT--------TCCEEEEEESCCTTHHHHHHHTTC-EEEE---EECEETTTTEE----CHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcc--------CCCEEEEcCCCchhHHHHHHHcCC-eeEe---eeeeccccCcc----CHHHHHHHHHhCC
Confidence 999998776553 689999999999887644433221 1111 0110 01111 6787777765 2
Q ss_pred CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---ccccccc-CCCcc---eeeecccc
Q 013008 245 GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHEHY-GIFPD---IMTLAKPL 317 (451)
Q Consensus 245 ~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~~~-~~~pd---i~t~sK~l 317 (451)
.++++|++...++++|. .++.+.+++|.++|++||+++|+||+|.+|+..+. ......+ +..++ +.++||.+
T Consensus 174 ~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~ 252 (401)
T 7aat_A 174 EKSIILLHACAHNPTGV-DPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM 252 (401)
T ss_dssp TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS
T ss_pred CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccc
Confidence 45677777766666665 57999999999999999999999999998866542 1122111 22233 35899999
Q ss_pred c-CCcccccccc---cHH----HHhhccCCCccCCCCCcHHHHHHHHHHHHH----------hcC--hHHHHH------H
Q 013008 318 A-GGLPIGAALV---TEK----VASAINYGDHGSTFAGSPLVCNAAIAVLDK----------ISN--PAFLAS------K 371 (451)
Q Consensus 318 g-~G~~iG~v~~---~~~----i~~~~~~~~~~~t~~~~~~~~aaa~aal~~----------~~~--~~~~~~------~ 371 (451)
+ .|+|+||+++ +++ +.+.+.......+.+.+.++++++..+++. ++. ..+.++ .
T Consensus 253 ~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 332 (401)
T 7aat_A 253 GLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSN 332 (401)
T ss_dssp CCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 6899999775 565 333333222223344455665555544421 000 001110 1
Q ss_pred HhCCC---Ccceecc-cceeEEEEecCChHHHHHHH-HHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 372 LARNP---HVKDVRG-LGLIIGIEFDVSATPVVDAC-RDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 372 ~~~~~---~~~~v~g-~G~~~~~~~~~~~~~~~~~l-~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
++++. .+....+ .|++.++.+ ....+ ..+ .++||++.++ +|++++. +++++|++++++|++++
T Consensus 333 L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~ll~~~gi~v~~~-----~Ris~~~-~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 333 LKKEGSSHNWQHITDQIGMFCFTGL--KPEQV-ERLTKEFSIYMTKD-----GRISVAG-VASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHHTTCCSCCHHHHHCCSSEEECCC--CHHHH-HHHHHHHCEECCTT-----CEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred HHhcCCCCCCceecCCcceEEecCC--CHHHH-HHHHHhCCEeccCC-----CeEEecc-CChhhHHHHHHHHHHHh
Confidence 22221 2222233 355555443 33444 555 5679998754 5888764 45566999999999876
No 182
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.89 E-value=7.3e-21 Score=194.48 Aligned_cols=305 Identities=15% Similarity=0.161 Sum_probs=198.0
Q ss_pred CCCCCHHHHHHHHHHHhhcccccCCCCC--------HHHHHHHHHHhhccCCCe-EEecCCHHHHHHHHHHHHHHHhhhc
Q 013008 112 LGHGDADWIKAVVDQANVLTHVSNMYYS--------IPQIELAKRLVACSFADR-VFFSNTGTEANEAAIKFARKFQRHS 182 (451)
Q Consensus 112 lG~~~p~v~~a~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~~~e~-v~~~~sG~eA~~~al~~a~~~~~~~ 182 (451)
.+|.+|++.+++.++.. .. +.+.. ....++++++++.++.+. +++++||++|+..++++++.+...+
T Consensus 75 ~~~~~p~v~~~~~~~~~---~~-~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~ 150 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLFA---DL-HPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDR 150 (474)
T ss_dssp CCCCCCHHHHHHHHTTS---SC-CTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHH---hc-CCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhc
Confidence 44778998888877522 11 22221 336788889999888654 5578999999999999887653211
Q ss_pred CCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCCCeEEEEEccccC
Q 013008 183 NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPGKTAAVFVEPIQG 257 (451)
Q Consensus 183 ~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~aavi~ep~~~ 257 (451)
+.. .++++||+.++. |+....+....|. .++.++.+ |+++|++++.+ ++++|++++.+
T Consensus 151 Gd~--~~r~~Vlv~~~~-h~~~~~~~~~~G~------------~vv~v~~~~~~~~d~~~L~~~i~~-~t~~v~~~~pn- 213 (474)
T 1wyu_B 151 GEG--RTRRVVLVPDSA-HGSNPATASMAGY------------QVREIPSGPEGEVDLEALKRELGP-HVAALMLTNPN- 213 (474)
T ss_dssp TCT--TTCCEEEEETTS-CTHHHHHHHHTTC------------EEEEECBCTTSSBCHHHHHHHCST-TEEEEEECSSC-
T ss_pred CCc--cCCCEEEEeCCc-ChhhHHHHHHCCC------------EEEEecCCCCCCcCHHHHHHhhCC-CceEEEEECCC-
Confidence 100 024588888855 5665555444332 12233332 89999999974 57888888754
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeee--cccccC-----CcccccccccH
Q 013008 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTL--AKPLAG-----GLPIGAALVTE 330 (451)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~--sK~lg~-----G~~iG~v~~~~ 330 (451)
+.|.+. +.+++|+++|++||+++|+||+|..+ ..|.. ....++ +|++++ +|++++ |+++|++++++
T Consensus 214 ~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g~~-~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~~~~~~ 286 (474)
T 1wyu_B 214 TLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMGWA-RPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKA 286 (474)
T ss_dssp TTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTTTC-CHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECG
T ss_pred CCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hccCC-CcccCC--CcEEEEeCccccccCCCCCCCCeEEEEEcH
Confidence 466552 23999999999999999999999532 23321 122233 788766 798863 36999999999
Q ss_pred HHHhhccCC-------------------CccCCCCCcHHHHHHHHHHHHHhcChHH---HHH----------HHhCCCCc
Q 013008 331 KVASAINYG-------------------DHGSTFAGSPLVCNAAIAVLDKISNPAF---LAS----------KLARNPHV 378 (451)
Q Consensus 331 ~i~~~~~~~-------------------~~~~t~~~~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~~ 378 (451)
++++.+... ....++++|+++++++.+.++.+..+.+ .++ .+++. .+
T Consensus 287 ~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~ 365 (474)
T 1wyu_B 287 HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GY 365 (474)
T ss_dssp GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-Cc
Confidence 988877510 0113345788888888888875432222 111 12222 22
Q ss_pred ceeccccee--EEEEe--cCChHHHHHHHHHCCceeeecC----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 379 KDVRGLGLI--IGIEF--DVSATPVVDACRDSGLLVLTAG----KGNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 379 ~~v~g~G~~--~~~~~--~~~~~~~~~~l~~~Gv~~~~~~----~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
..+.+.+.+ +++.+ .....++.+.|.++||.+.... ..+.+|++++..+|++++++++++|++++++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 366 RVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp BCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred EecCCCCcceEEEEEcCCCCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 211222222 44444 2457889999999999863221 1367999998888999999999999988754
No 183
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.89 E-value=6.9e-22 Score=195.54 Aligned_cols=290 Identities=12% Similarity=0.052 Sum_probs=189.3
Q ss_pred cCCCCCHH----HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCC
Q 013008 111 ALGHGDAD----WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDS 186 (451)
Q Consensus 111 ~lG~~~p~----v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~ 186 (451)
.+++++|. +.+++.+.+... ..+..+...+++++++++++.+.+++++||++|++.+++.+. .
T Consensus 7 ~l~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~--~------- 73 (373)
T 3frk_A 7 SFKPMHDEIEYEIKFKFEEIYKRN----WFILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYD--I------- 73 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHT----CCSSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTT--C-------
T ss_pred CCCcccCCCCHHHHHHHHHHHHCC----CccCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC--C-------
Confidence 35555554 445555544432 224456688999999999998899999999999999999762 1
Q ss_pred CCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC------CHHHHHHhcCCCCeEEEEEccccCCCC
Q 013008 187 KEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG------NIEATRKLIQPGKTAAVFVEPIQGEGG 260 (451)
Q Consensus 187 ~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~aavi~ep~~~~~G 260 (451)
.++++|++.+++|++........ |.. +.+++.+ |+++|++++++ ++++|+ |. ++.|
T Consensus 74 -~~gd~Vi~~~~~~~~~~~~~~~~-g~~------------~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~--~~-n~~G 135 (373)
T 3frk_A 74 -GFGDEVIVPSNTFIATALAVSYT-GAK------------PIFVEPDIRTYNIDPSLIESAITE-KTKAII--AV-HLYG 135 (373)
T ss_dssp -CTTCEEEEETTSCTHHHHHHHHH-SCE------------EEEECEETTTTEECGGGTGGGCCT-TEEEEE--EE-CCTT
T ss_pred -CCcCEEEECCCCcHHHHHHHHHc-CCE------------EEEEeccccccCcCHHHHHHhcCC-CCeEEE--EE-CCCc
Confidence 15889999999998865443222 211 1122211 78899999875 677777 33 3556
Q ss_pred ccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec----ccccC-Cccccccccc-HHHHh
Q 013008 261 IYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA----KPLAG-GLPIGAALVT-EKVAS 334 (451)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s----K~lg~-G~~iG~v~~~-~~i~~ 334 (451)
...+ +++|.++|++||++||+||+|+ +|.. +.....+..+|++++| |.+++ |. .|+++++ +++.+
T Consensus 136 ~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~ 206 (373)
T 3frk_A 136 QPAD----MDEIKRIAKKYNLKLIEDAAQA-HGSL---YKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAE 206 (373)
T ss_dssp CCCC----HHHHHHHHHHHTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHH
T ss_pred Cccc----HHHHHHHHHHcCCEEEEECCcc-cCCE---ECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHH
Confidence 6555 9999999999999999999996 2211 2223445557888777 99987 64 6777775 55655
Q ss_pred hccCC------------CccCCCCCcHHHHHHHHHHHHHhcChHHHHH-------HH---hCCCCccee-c---ccce--
Q 013008 335 AINYG------------DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS-------KL---ARNPHVKDV-R---GLGL-- 386 (451)
Q Consensus 335 ~~~~~------------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~-------~~---~~~~~~~~v-~---g~G~-- 386 (451)
.+... ..+.++..+++.++++...++.++ .+.++ +. +.++ +... . ....
T Consensus 207 ~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 283 (373)
T 3frk_A 207 KIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLD--KWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWY 283 (373)
T ss_dssp HHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCS
T ss_pred HHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeE
Confidence 54321 122355567888877777665432 22222 22 2333 2111 0 1111
Q ss_pred eEEEEecCChHHHHHHHHHCCceeeecCC-------------------C-------CEEEEeCCCCCCHHHHHHHHHHHH
Q 013008 387 IIGIEFDVSATPVVDACRDSGLLVLTAGK-------------------G-------NVVRLVPPLIISEQELDQAVEILC 440 (451)
Q Consensus 387 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------------------~-------~~iri~~~~~~t~e~i~~~l~~l~ 440 (451)
.+.+.. .+..++.+.|.++||.+.+... + ..+|+.+...+|++|++++++.|+
T Consensus 284 ~~~~~~-~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~ 362 (373)
T 3frk_A 284 TFVIRS-EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKIN 362 (373)
T ss_dssp SEEEEE-SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred EEEEEe-CCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence 122222 3577899999999998874320 0 469999999999999999999998
Q ss_pred HHHH
Q 013008 441 KTLP 444 (451)
Q Consensus 441 ~~l~ 444 (451)
++..
T Consensus 363 ~~~~ 366 (373)
T 3frk_A 363 AWKL 366 (373)
T ss_dssp TCC-
T ss_pred HHhh
Confidence 7654
No 184
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.89 E-value=1.8e-21 Score=193.54 Aligned_cols=299 Identities=17% Similarity=0.161 Sum_probs=193.9
Q ss_pred CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 013008 116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195 (451)
Q Consensus 116 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~ 195 (451)
.|++.+++.+++++... ..+......+++++++++++.+..++++||++|++.+++.+. . .++++||+
T Consensus 16 ~~~~~~a~~~~l~~~~~--~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~--~--------~~gd~Vi~ 83 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQW--WRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMG--V--------GPGTEVIV 83 (388)
T ss_dssp CHHHHHHHHHHHHTSCC--BTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEE
T ss_pred CHHHHHHHHHHHHcCCe--eecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC--C--------CCcCEEEE
Confidence 38999999999876322 223445688999999999986666777788999999999762 1 15789999
Q ss_pred EcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHH
Q 013008 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDA 275 (451)
Q Consensus 196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l 275 (451)
.+++||+........+.... . .+..++.. ..|+++|++++++ ++++|+ |++. .|.+.+ +++|.++
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~-~---v~~~~~~~---~~d~~~l~~~i~~-~~~~v~--~~n~-tG~~~~----l~~i~~l 148 (388)
T 1b9h_A 84 PAFTFISSSQAAQRLGAVTV-P---VDVDAATY---NLDPEAVAAAVTP-RTKVIM--PVHM-AGLMAD----MDALAKI 148 (388)
T ss_dssp ESSSCTHHHHHHHHTTCEEE-E---ECBCTTTC---CBCHHHHHHHCCT-TEEEEC--CBCG-GGCCCC----HHHHHHH
T ss_pred CCCccHHHHHHHHHcCCEEE-E---EecCCCcC---CCCHHHHHHhcCc-CceEEE--EeCC-ccCcCC----HHHHHHH
Confidence 99999988654332221111 0 11111100 0189999999964 566666 5554 465555 8999999
Q ss_pred HHHhCCEEEEeccccC-CCcccccccccccCCCcceeeec--ccccCCcccccccccHH-H--HhhccC---CC------
Q 013008 276 CDDAGALLVFDEVQCG-LGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEK-V--ASAINY---GD------ 340 (451)
Q Consensus 276 ~~~~g~llI~DEv~tg-~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~-i--~~~~~~---~~------ 340 (451)
|++||++||+||+|+. ....|.. ...++ ..++.+|| |++++| ++|+++++++ + ++.+.. ..
T Consensus 149 a~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (388)
T 1b9h_A 149 SADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDR 224 (388)
T ss_dssp HHHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCS
T ss_pred HHHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHHhCCCCccCc
Confidence 9999999999999973 3222321 22223 34455666 666654 7899998865 6 554421 10
Q ss_pred ------ccCCCCCcHHHHHHHHHHHHHhcC--hHH------HHHHHhCCCCcceec-------ccceeEEEEecC----C
Q 013008 341 ------HGSTFAGSPLVCNAAIAVLDKISN--PAF------LASKLARNPHVKDVR-------GLGLIIGIEFDV----S 395 (451)
Q Consensus 341 ------~~~t~~~~~~~~aaa~aal~~~~~--~~~------~~~~~~~~~~~~~v~-------g~G~~~~~~~~~----~ 395 (451)
.+.++..+++.++++.+.++.+++ +.. +.+.++.+|.+.... ..+.++++.+.. +
T Consensus 225 ~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (388)
T 1b9h_A 225 RYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEER 304 (388)
T ss_dssp SCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHH
T ss_pred cceeecccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCccc
Confidence 012233567777766666654322 111 111334455443221 236788888753 3
Q ss_pred hHHHHHHHHHCCceeeecCCC--------------------------------CEEEEeCCCCC-CHHHHHHHHHHHHHH
Q 013008 396 ATPVVDACRDSGLLVLTAGKG--------------------------------NVVRLVPPLII-SEQELDQAVEILCKT 442 (451)
Q Consensus 396 ~~~~~~~l~~~Gv~~~~~~~~--------------------------------~~iri~~~~~~-t~e~i~~~l~~l~~~ 442 (451)
..++.+.|.++||.+.++..+ ..+|+.+...+ |+||++++++.|+++
T Consensus 305 ~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~ 384 (388)
T 1b9h_A 305 RNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADA 384 (388)
T ss_dssp HHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 567999999999998754211 24888888888 999999999999998
Q ss_pred HHH
Q 013008 443 LPV 445 (451)
Q Consensus 443 l~~ 445 (451)
+++
T Consensus 385 ~~~ 387 (388)
T 1b9h_A 385 VAR 387 (388)
T ss_dssp HHH
T ss_pred Hhh
Confidence 764
No 185
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.88 E-value=5.9e-22 Score=201.10 Aligned_cols=306 Identities=17% Similarity=0.159 Sum_probs=186.7
Q ss_pred CCHHHHHHHHHHHh-hcccccC----CCCCHH---HHHHH-HHHhhccCCCeEEe-cCCHHHHHHHHHHHHHHHhhhcCC
Q 013008 115 GDADWIKAVVDQAN-VLTHVSN----MYYSIP---QIELA-KRLVACSFADRVFF-SNTGTEANEAAIKFARKFQRHSNP 184 (451)
Q Consensus 115 ~~p~v~~a~~~~~~-~~~~~~~----~~~~~~---~~~l~-~~l~~~~~~e~v~~-~~sG~eA~~~al~~a~~~~~~~~~ 184 (451)
.+|+|++|+.+++. .+..++. ...... .++++ +++++.++.+.+.+ ++||++|++.++++++
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~-------- 128 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALM-------- 128 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhc--------
Confidence 48999999998875 3322211 112222 25566 88999889877777 9999999999999765
Q ss_pred CCCCCCceEEEEcCCccCChhhhh--hccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEE-ccccCCCCc
Q 013008 185 DSKEPATEFVSFTNSFHGRTMGAL--ALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFV-EPIQGEGGI 261 (451)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~-ep~~~~~G~ 261 (451)
.++|+|++.+++|+++..... ...+.. +.....+..++.. ..|+++|+++++..++++|++ .|++++++
T Consensus 129 ---~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~---~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~- 200 (447)
T 3h7f_A 129 ---SPGERLLGLDLANGGHLTHGMRLNFSGKL-YENGFYGVDPATH---LIDMDAVRATALEFRPKVIIAGWSAYPRVL- 200 (447)
T ss_dssp ---CTTCEEEEECGGGTCCGGGTCTTSHHHHS-SEEEEECCCTTTC---SCCHHHHHHHHHHHCCSEEEEECSSCCSCC-
T ss_pred ---CCCCEEEecCcccccccchhhhhhhcCCe-eEEEEcCcCcccC---CcCHHHHHHHHHhcCCeEEEEcCCCCCCcc-
Confidence 268999999999987432211 111110 0000011111110 138999999985333456666 56665543
Q ss_pred cccCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcccccccccccCCCccee--eecccccCCcccccccccHHHHhhccC
Q 013008 262 YSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINY 338 (451)
Q Consensus 262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~ 338 (451)
++++|+++|++||++||+||+| .|+.+.|..... .. ..|++ +++|+++ |+++|++++++++++.+..
T Consensus 201 ------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~--~~-~~di~~~s~sK~l~-G~~gG~i~~~~~~~~~l~~ 270 (447)
T 3h7f_A 201 ------DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP--VP-HADVVSTTVHKTLG-GGRSGLIVGKQQYAKAINS 270 (447)
T ss_dssp ------CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS--TT-TCSEEEEESSGGGC-CCSCEEEEECGGGHHHHHH
T ss_pred ------CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC--CC-CCcEEEecCCcCCC-CCCeEEEEECHHHHHHHhh
Confidence 3999999999999999999997 444333432111 11 23555 6789996 6788999999988887754
Q ss_pred CCccCCCCCc-HHHHHHHHHHHHHhcChH---HHHH----------HHhCC----CCcceec--ccceeEEEEec---CC
Q 013008 339 GDHGSTFAGS-PLVCNAAIAVLDKISNPA---FLAS----------KLARN----PHVKDVR--GLGLIIGIEFD---VS 395 (451)
Q Consensus 339 ~~~~~t~~~~-~~~~aaa~aal~~~~~~~---~~~~----------~~~~~----~~~~~v~--g~G~~~~~~~~---~~ 395 (451)
....++++++ +..++++.+++..+..+. +.++ .++.. +.+..+. ..+.++++++. ..
T Consensus 271 ~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 350 (447)
T 3h7f_A 271 AVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLD 350 (447)
T ss_dssp HHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSCC
T ss_pred hcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCCC
Confidence 3333444433 333555555666544422 2221 12222 1122222 24556677763 23
Q ss_pred hHHHHHHHHHCCceee----ecC-----CCCEEEEeCCCC----CCHHHHHHHHHHHHHHHHHH
Q 013008 396 ATPVVDACRDSGLLVL----TAG-----KGNVVRLVPPLI----ISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 396 ~~~~~~~l~~~Gv~~~----~~~-----~~~~iri~~~~~----~t~e~i~~~l~~l~~~l~~~ 446 (451)
...+.+.|.++||++. |.. .++.+|+.++.. ++++++++++++|++++++.
T Consensus 351 ~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 351 GQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp HHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 4556666667799987 431 135689987654 68999999999999998654
No 186
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.88 E-value=8.6e-22 Score=195.22 Aligned_cols=304 Identities=10% Similarity=0.025 Sum_probs=194.9
Q ss_pred CC-EEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCC---CeEEecCCHHHHHHHHH
Q 013008 97 GR-EYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFA---DRVFFSNTGTEANEAAI 172 (451)
Q Consensus 97 G~-~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---e~v~~~~sG~eA~~~al 172 (451)
|. .++|+..+.+.. ..+|++++++. .+. .+...+.++++.++++++. +++++++||++|+..++
T Consensus 26 g~~~v~~~~~~~~~~---~~~~~v~~a~~----~~~-----~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~ 93 (374)
T 2aeu_A 26 GRDALYDLSGLSGGF---LIDEKDKALLN----TYI-----GSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATI 93 (374)
T ss_dssp CGGGCEECSSCCCCC---CCCHHHHHHHT----STT-----HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHH
T ss_pred CccceeeecccCCCC---CCCHHHHHHHH----Hhc-----CchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHH
Confidence 44 466766543211 25678888775 111 1122356777777777776 89999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhh--hhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEE-
Q 013008 173 KFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGA--LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAA- 249 (451)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aa- 249 (451)
+.+ . +|+||+.+|+||++.... ....| ..+..+ .|+++|+++ . .++++
T Consensus 94 ~~~----~---------gd~Vl~~~~~y~~~~~~~~~~~~~g------------~~~~~v--~d~~~l~~~-~-~~~~~~ 144 (374)
T 2aeu_A 94 LAL----K---------PKKVIHYLPELPGHPSIERSCKIVN------------AKYFES--DKVGEILNK-I-DKDTLV 144 (374)
T ss_dssp HHH----C---------CSEEEEECSSSSCCTHHHHHHHHTT------------CEEEEE--SCHHHHHTT-C-CTTEEE
T ss_pred HhC----C---------CCEEEEecCCCCccHHHHHHHHHcC------------cEEEEe--CCHHHHHhc-C-CCccEE
Confidence 954 1 789999999999865321 11111 123333 589999988 5 46788
Q ss_pred EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCccccccc
Q 013008 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAAL 327 (451)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~ 327 (451)
|+++++++++|. +...+++|.++|++||+++|+||+|..+ ..+...........+|++ ++||.++| +++|+++
T Consensus 145 v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~di~~~S~sK~l~g-~~~G~~~ 219 (374)
T 2aeu_A 145 IITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLGADLVVTSTDKLMEG-PRGGLLA 219 (374)
T ss_dssp EEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHTCSEEEEETTSSSSS-CSCEEEE
T ss_pred EEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccccccCCccccCCcEEEecCcccccC-cceEEEE
Confidence 888888777773 5566999999999999999999998543 211110000111235666 58999874 7999999
Q ss_pred ccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHH---HHH-----------HHhCCCC------cc-eecccce
Q 013008 328 VTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF---LAS-----------KLARNPH------VK-DVRGLGL 386 (451)
Q Consensus 328 ~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~---~~~-----------~~~~~~~------~~-~v~g~G~ 386 (451)
+++++++.+.........+.+++.++++.++|+.+..+.+ .++ +.+.++. +. ..++.|.
T Consensus 220 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~ 299 (374)
T 2aeu_A 220 GKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGF 299 (374)
T ss_dssp EEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEE
T ss_pred ECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceE
Confidence 9999998876432223345689999999999987532111 111 1121221 11 2345666
Q ss_pred eEEEE-ecCCh------HHHHHHHH-HCCceeeecCC----CCEEEEeCCC-CCCHHHHHHHHHHHHHHHHHHh
Q 013008 387 IIGIE-FDVSA------TPVVDACR-DSGLLVLTAGK----GNVVRLVPPL-IISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 387 ~~~~~-~~~~~------~~~~~~l~-~~Gv~~~~~~~----~~~iri~~~~-~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
++++. +. .. .+++..++ ++||++.|+.. .+++||+++. ...+++++++++.|+++++++.
T Consensus 300 ~~~~~~~~-~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 300 VIKRVYKD-DTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp EEEEEESS-HHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred EEEeeccc-ccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 65553 21 11 12555554 67999987531 2579998763 3334458899999998888764
No 187
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.88 E-value=1.1e-21 Score=196.94 Aligned_cols=304 Identities=17% Similarity=0.151 Sum_probs=176.2
Q ss_pred CCHHHHHHHHHHHhh-ccccc---C----CCCCHHHHHHH-HHHhhccCCCeE-EecCCHHHHHHHHHHHHHHHhhhcCC
Q 013008 115 GDADWIKAVVDQANV-LTHVS---N----MYYSIPQIELA-KRLVACSFADRV-FFSNTGTEANEAAIKFARKFQRHSNP 184 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~---~----~~~~~~~~~l~-~~l~~~~~~e~v-~~~~sG~eA~~~al~~a~~~~~~~~~ 184 (451)
.||+|++|+.+++.+ +..++ . ....+...+++ +++++.++.+.. +++++|++|++.+++++.
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~-------- 113 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL-------- 113 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhc--------
Confidence 699999999998843 21111 0 11122334433 677777775543 346788999999998664
Q ss_pred CCCCCCceEEEEcCCccCChhhhhh--ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEc-cccCCCCc
Q 013008 185 DSKEPATEFVSFTNSFHGRTMGALA--LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE-PIQGEGGI 261 (451)
Q Consensus 185 ~~~~~~~~ii~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~e-p~~~~~G~ 261 (451)
.+++.|++.++.|++....... ..+.......+ +...+ ...|+++|+++++++++++|+++ |+++ .
T Consensus 114 ---~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~----~~~d~~~l~~~i~~~~~~~v~~~~~~~~---~ 182 (420)
T 3gbx_A 114 ---QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPY-GIDES----GKIDYDEMAKLAKEHKPKMIIGGFSAYS---G 182 (420)
T ss_dssp ---CTTCEEEEEEEC------------CHHHHSEEEEE-EECTT----CSCCHHHHHHHHHHHCCSEEEECCTTCC---S
T ss_pred ---CCCCEEEecchhhcceeccchhhhhcccceeEEec-cCCcc----CCcCHHHHHHHHHhcCCeEEEEecCccC---C
Confidence 2688999999888663311111 11100000000 00000 01489999999975446777774 4443 2
Q ss_pred cccCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccccccccccCCCcceee--ecccccCCcccccccccH---HHHhh
Q 013008 262 YSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTE---KVASA 335 (451)
Q Consensus 262 ~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~---~i~~~ 335 (451)
..+ +++|+++|++||++||+||+|. |+.+.|..... .. .+|+++ +||+++ |.+.|++++++ ++++.
T Consensus 183 ~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~~~~~~~~~ 254 (420)
T 3gbx_A 183 VVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKGGDEELYKK 254 (420)
T ss_dssp CCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESSCCHHHHHH
T ss_pred ccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcCCcHHHHHH
Confidence 344 9999999999999999999974 44333432111 11 278876 679997 44569998887 78777
Q ss_pred ccCCCccCCCCCc-HHHHHHHHHHHHHhcChHH---HHH----------HHhCCCCcceec--ccceeEEEEec---CCh
Q 013008 336 INYGDHGSTFAGS-PLVCNAAIAVLDKISNPAF---LAS----------KLARNPHVKDVR--GLGLIIGIEFD---VSA 396 (451)
Q Consensus 336 ~~~~~~~~t~~~~-~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~~~~v~--g~G~~~~~~~~---~~~ 396 (451)
+......++++.+ ...++++.+++.....+.+ .++ .++.. .+..+. ..+.++++.+. ...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 333 (420)
T 3gbx_A 255 LNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLVDKNLTG 333 (420)
T ss_dssp HHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGGTCCH
T ss_pred hhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcCCCCCCH
Confidence 6543333333333 3333343434443322222 222 11222 222233 35667787773 246
Q ss_pred HHHHHHHHHCCceeee-------cCC--CCEEEEeCCCC----CCHHHHHHHHHHHHHHHHHH
Q 013008 397 TPVVDACRDSGLLVLT-------AGK--GNVVRLVPPLI----ISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 397 ~~~~~~l~~~Gv~~~~-------~~~--~~~iri~~~~~----~t~e~i~~~l~~l~~~l~~~ 446 (451)
..+.+.|.++||++.+ +.. ++.+|++++.. ++++++++++++|++++++.
T Consensus 334 ~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 334 KEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp HHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 6778888889999987 211 24599988755 56899999999999988653
No 188
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.88 E-value=1.9e-21 Score=196.49 Aligned_cols=280 Identities=16% Similarity=0.159 Sum_probs=188.3
Q ss_pred cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (451)
Q Consensus 132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (451)
+.+..+.++...+++++|+++++.+..++++||++|+..+++.+. .++++||+.++.|++.........
T Consensus 106 ~~y~r~~~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~-----------~~Gd~Vi~~~~~y~~~~~~~~~~~ 174 (445)
T 1qgn_A 106 FEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALV-----------PAGGHIVTTTDCYRKTRIFIETIL 174 (445)
T ss_dssp CCBGGGCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHS-----------CSSCEEEEETTSCHHHHHHHHHTG
T ss_pred ccccCCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-----------CCCCEEEEcCCCchhHHHHHHHHH
Confidence 334445677789999999999987788888899999999999654 158899999999987542211000
Q ss_pred CCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008 212 SKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (451)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg 291 (451)
......+.+++.+|+++|+++++++.+++|++|++++++|.+.+ +++|.++|++||+++|+||+|+.
T Consensus 175 ---------~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~ 241 (445)
T 1qgn_A 175 ---------PKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFAT 241 (445)
T ss_dssp ---------GGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTC
T ss_pred ---------HHcCCEEEEeCCCCHHHHHHHhccCCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcc
Confidence 01123456777789999999997544489999999888888776 99999999999999999999963
Q ss_pred CCcccccccccccCCCcceee--ecccccC-C-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--h
Q 013008 292 LGRTGYLWAHEHYGIFPDIMT--LAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--P 365 (451)
Q Consensus 292 ~gr~G~~~~~~~~~~~pdi~t--~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~ 365 (451)
. ... ......+|+++ ++|.+++ | .++|++++++++++.+...........+|+.+.++...++.+.. +
T Consensus 242 ~-~~~-----~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~ 315 (445)
T 1qgn_A 242 P-LNQ-----KALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQ 315 (445)
T ss_dssp T-TTC-----CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHHHHHH
T ss_pred c-ccC-----CccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHHHHHHH
Confidence 2 111 12344578775 7899986 4 57999999999888775322211223467776666666654321 1
Q ss_pred HHHHH------HHhCCCCccee------------------cccceeEEEEecCC---hHHHHHHHHHCCceeeec-----
Q 013008 366 AFLAS------KLARNPHVKDV------------------RGLGLIIGIEFDVS---ATPVVDACRDSGLLVLTA----- 413 (451)
Q Consensus 366 ~~~~~------~~~~~~~~~~v------------------~g~G~~~~~~~~~~---~~~~~~~l~~~Gv~~~~~----- 413 (451)
...++ .++.+|.+..+ ++.|.+++|.+... ...+.+.|...++.+..+
T Consensus 316 ~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl 395 (445)
T 1qgn_A 316 QQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESI 395 (445)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCE
T ss_pred HHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCcee
Confidence 11111 44555543221 34688999998533 334444443223322111
Q ss_pred --------------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 414 --------------------G-KGNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 414 --------------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
+ ..+.+|+++. .||++++++.|+++++.
T Consensus 396 ~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 396 VDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp EECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred eecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 1 1267999766 46899999999998864
No 189
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.88 E-value=1.9e-21 Score=192.07 Aligned_cols=293 Identities=15% Similarity=0.109 Sum_probs=189.2
Q ss_pred CCCCCHH----HHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 013008 112 LGHGDAD----WIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSK 187 (451)
Q Consensus 112 lG~~~p~----v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~ 187 (451)
+++++|. +.+++.+++... ..+..+...+++++++++++.+++++++||++|++.+++.+..
T Consensus 7 ~~~~~~~~~~~v~~a~~~~~~~~----~~~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~---------- 72 (367)
T 3nyt_A 7 LKNQQARIKDKIDAGIQRVLRHG----QYILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGV---------- 72 (367)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC----CCSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTC----------
T ss_pred ccccccccCHHHHHHHHHHHhcC----CccCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCC----------
Confidence 5555544 445555544432 2235566889999999999988999999999999999997631
Q ss_pred CCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHH
Q 013008 188 EPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKE 267 (451)
Q Consensus 188 ~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~ 267 (451)
.++++|++..++|++........+....+ .+..++.. .-|+++|++++.+ ++++|+.++ ..|...+
T Consensus 73 ~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~----~~~~~~~~---~~d~~~l~~~i~~-~~~~v~~~~---~~G~~~~--- 138 (367)
T 3nyt_A 73 GPGDEVITPGFTYVATAETVALLGAKPVY----VDIDPRTY---NLDPQLLEAAITP-RTKAIIPVS---LYGQCAD--- 138 (367)
T ss_dssp CTTCEEEEESSSCTHHHHHHHHTTCEEEE----ECBCTTTC---SBCGGGTGGGCCT-TEEEECCBC---GGGCCCC---
T ss_pred CCcCEEEECCCccHHHHHHHHHcCCEEEE----EecCCccC---CcCHHHHHHhcCc-CCcEEEeeC---CccChhh---
Confidence 15889999999998866544333221111 11111100 0178899999864 678887443 3344444
Q ss_pred HHHHHHHHHHHhCCEEEEecccc-CCCcccccccccccCCCcceeeec----ccccC-Ccccccccc-cHHHHhhccCCC
Q 013008 268 FLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA----KPLAG-GLPIGAALV-TEKVASAINYGD 340 (451)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pdi~t~s----K~lg~-G~~iG~v~~-~~~i~~~~~~~~ 340 (451)
+++|.++|++||++||+||+|+ |..+.|. ..+...|++++| |.+++ |. .|+++. ++++++.+....
T Consensus 139 -~~~i~~la~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~ 211 (367)
T 3nyt_A 139 -FDAINAIASKYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIA 211 (367)
T ss_dssp -HHHHHHHHHHTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHT
T ss_pred -HHHHHHHHHHcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHH
Confidence 9999999999999999999996 2322222 122223888776 99987 76 788777 477776654311
Q ss_pred ------------ccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCc-ceec----ccceeEEEEec
Q 013008 341 ------------HGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHV-KDVR----GLGLIIGIEFD 393 (451)
Q Consensus 341 ------------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~-~~v~----g~G~~~~~~~~ 393 (451)
.+.++..+++.++++++.++.++. +.++ .++..+.. .... .....+.+.+.
T Consensus 212 ~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (367)
T 3nyt_A 212 RHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEE--EIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD 289 (367)
T ss_dssp BTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS
T ss_pred hcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC
Confidence 135677899999999888875422 2111 22223211 0011 11122333333
Q ss_pred CChHHHHHHHHHCCceeeecCC-----------------------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008 394 VSATPVVDACRDSGLLVLTAGK-----------------------GNVVRLVPPLIISEQELDQAVEILCKT 442 (451)
Q Consensus 394 ~~~~~~~~~l~~~Gv~~~~~~~-----------------------~~~iri~~~~~~t~e~i~~~l~~l~~~ 442 (451)
+...+.+.|.++||.+.+... ...+|+.+....|++|++++++.|++.
T Consensus 290 -~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 290 -NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp -SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred -CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 577899999999998764321 135888888899999999999998753
No 190
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.87 E-value=1.3e-21 Score=194.91 Aligned_cols=285 Identities=15% Similarity=0.157 Sum_probs=189.8
Q ss_pred CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 013008 116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195 (451)
Q Consensus 116 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~ 195 (451)
+|++.+++.+.+....+ . .......++++.++++++.+.+++++||++|++.+++.+. . .++++|++
T Consensus 35 ~~~~~~a~~~~~~~~~~--~-~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~--~--------~~gd~vl~ 101 (391)
T 3dr4_A 35 DGNERDYVLECMDTTWI--S-SVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMG--I--------GPGDEVIV 101 (391)
T ss_dssp CSSHHHHHHHHHHHTCC--S-SCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHT--C--------CTTCEEEE
T ss_pred CHHHHHHHHHHHHcCCc--c-CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCcCEEEE
Confidence 36788888887765321 1 2456788999999999998899999999999999999772 1 15889999
Q ss_pred EcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC------CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHH
Q 013008 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG------NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFL 269 (451)
Q Consensus 196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l 269 (451)
.+++|++........+.. +.+++.+ |+++|++++++ ++++|+++ ++.|...+ +
T Consensus 102 ~~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~---n~tG~~~~----~ 160 (391)
T 3dr4_A 102 PSLTYIASANSVTYCGAT-------------PVLVDNDPRTFNLDAAKLEALITP-RTKAIMPV---HLYGQICD----M 160 (391)
T ss_dssp ESSSCTHHHHHHHHTTCE-------------EEEECBCTTTCSBCGGGSGGGCCT-TEEEECCB---CGGGCCCC----H
T ss_pred CCCchHHHHHHHHHCCCE-------------EEEEecCccccCcCHHHHHHhcCC-CceEEEEE---CCCCChhh----H
Confidence 999999876544332221 1122221 78899998864 67777743 24465555 9
Q ss_pred HHHHHHHHHhCCEEEEeccccC-CCcccccccccccCCCcceeeec----ccccCCccccccccc-HHHHhhccCC----
Q 013008 270 QFLRDACDDAGALLVFDEVQCG-LGRTGYLWAHEHYGIFPDIMTLA----KPLAGGLPIGAALVT-EKVASAINYG---- 339 (451)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~tg-~gr~G~~~~~~~~~~~pdi~t~s----K~lg~G~~iG~v~~~-~~i~~~~~~~---- 339 (451)
++|+++|++||++||+||+|+. ....+ ...+..+|++++| |++++| ++|+++.+ +++.+.+...
T Consensus 161 ~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g 234 (391)
T 3dr4_A 161 DPILEVARRHNLLVIEDAAEAVGATYRG-----KKSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQG 234 (391)
T ss_dssp HHHHHHHHHTTCEEEEECTTCTTCEETT-----EETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHcCCEEEEECcccccceECC-----eeecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhcC
Confidence 9999999999999999999962 21111 1233345777766 999764 57787765 5566554321
Q ss_pred ----------CccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCccee--------cccceeEEEE
Q 013008 340 ----------DHGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDV--------RGLGLIIGIE 391 (451)
Q Consensus 340 ----------~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v--------~g~G~~~~~~ 391 (451)
..+..+..+++.+++++..++.++ ++.++ .++... +... ...+.++++.
T Consensus 235 ~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~i~ 311 (391)
T 3dr4_A 235 MDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVD--EHLAARERVVGWYEQKLARLG-NRVTKPHVALTGRHVFWMYTVR 311 (391)
T ss_dssp CCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHGGGT-TSEECCCCCTTSCCCCSSEEEE
T ss_pred CCCCCcccccccccccCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCC-ccccCcCCCCCCcceeEEEEEE
Confidence 112235567777777666655432 12211 222221 1111 1223345666
Q ss_pred ecC----ChHHHHHHHHHCCceeeecCC-----------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 392 FDV----SATPVVDACRDSGLLVLTAGK-----------------------GNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 392 ~~~----~~~~~~~~l~~~Gv~~~~~~~-----------------------~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
+.. ...++.+.|.++||.+.++.. ...+|+.+...+|+|||++++++|++++
T Consensus 312 ~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 312 LGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp ECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred ECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 632 478899999999999986530 1468999999999999999999998754
No 191
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.87 E-value=1.9e-21 Score=194.06 Aligned_cols=276 Identities=16% Similarity=0.133 Sum_probs=184.6
Q ss_pred cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC
Q 013008 134 SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK 213 (451)
Q Consensus 134 ~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~ 213 (451)
+..+..+...+++++++++++.+.+++++||++|+..+++ +. .++++||+.++.||+........
T Consensus 49 ~~~~~~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~~-----------~~gd~Vi~~~~~y~~~~~~~~~~--- 113 (393)
T 1n8p_A 49 YSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATILQ-SL-----------PQGSHAVSIGDVYGGTHRYFTKV--- 113 (393)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-TS-----------CSSCEEEEESSCCHHHHHHHHHT---
T ss_pred eecCCChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-Hc-----------CCCCEEEEeCCCchHHHHHHHHH---
Confidence 3445666788999999999987788888999999999998 43 15889999999998753221000
Q ss_pred CCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHh----CCEEEEeccc
Q 013008 214 EHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDA----GALLVFDEVQ 289 (451)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~----g~llI~DEv~ 289 (451)
.......+.+++.+| ++|++++++ ++++|+++++++++|.+.+ +++|.++|++| |+++|+||+|
T Consensus 114 ------~~~~G~~v~~v~~~d-~~l~~~i~~-~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~ 181 (393)
T 1n8p_A 114 ------ANAHGVETSFTNDLL-NDLPQLIKE-NTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTF 181 (393)
T ss_dssp ------STTTCSCCEEESSHH-HHHHHHSCS-SEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTT
T ss_pred ------HHHcCcEEEEeCCCh-HHHHHhccc-CceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCc
Confidence 011123456677778 999999974 6889999999999998776 99999999999 9999999999
Q ss_pred cCCCcccccccccccCCCccee--eecccccC-Cccc-cccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC
Q 013008 290 CGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPI-GAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN 364 (451)
Q Consensus 290 tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~i-G~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 364 (451)
+.+.+ .... .++ +|++ +++|.+++ |+++ |+++++ +++++.+...........++..++++.++++.+..
T Consensus 182 ~~~~~-~~~~---~~~--~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~~ 255 (393)
T 1n8p_A 182 LSPYI-SNPL---NFG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKTLHL 255 (393)
T ss_dssp THHHH-CCGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHH
T ss_pred ccccc-CCHH---HcC--CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHH
Confidence 86533 2221 223 5665 78899996 7888 888884 78888775432212233467777777666654311
Q ss_pred --hHHHHH------HHhCCCC-ccee------------------cc-c-ceeEEEEecCC---hHHHHHHHHHCCceee-
Q 013008 365 --PAFLAS------KLARNPH-VKDV------------------RG-L-GLIIGIEFDVS---ATPVVDACRDSGLLVL- 411 (451)
Q Consensus 365 --~~~~~~------~~~~~~~-~~~v------------------~g-~-G~~~~~~~~~~---~~~~~~~l~~~Gv~~~- 411 (451)
+...++ .+++++. +..+ ++ . |.+++|.+... ...+...|...++.+.
T Consensus 256 ~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~ 335 (393)
T 1n8p_A 256 RVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESL 335 (393)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCC
Confidence 111111 3344443 2221 23 5 77889988532 3334444322232221
Q ss_pred ---------e---c------------C-CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008 412 ---------T---A------------G-KGNVVRLVPPLIISEQELDQAVEILCKT 442 (451)
Q Consensus 412 ---------~---~------------~-~~~~iri~~~~~~t~e~i~~~l~~l~~~ 442 (451)
| . + ..+.+|+++....++++++.+.++|+++
T Consensus 336 G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 336 GGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp CCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 1 0 1 1268999999999999988888888754
No 192
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.87 E-value=1.1e-20 Score=189.49 Aligned_cols=310 Identities=15% Similarity=0.084 Sum_probs=183.5
Q ss_pred EEeeccCcccccCCCCCHHHHHHHHHHHhh-cccccC----CCCCHHHH----HHHHHHhhccCCCeE-EecCCHHHHHH
Q 013008 100 YLDLSSGIAVNALGHGDADWIKAVVDQANV-LTHVSN----MYYSIPQI----ELAKRLVACSFADRV-FFSNTGTEANE 169 (451)
Q Consensus 100 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~~----~~~~~~~~----~l~~~l~~~~~~e~v-~~~~sG~eA~~ 169 (451)
.+++.++.. +.+|+|++|+.+++.+ +..++. ........ .+.+++++.++.+.. +++++|++|++
T Consensus 27 ~i~l~~~~~-----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~ 101 (417)
T 3n0l_A 27 GLEMIASEN-----FTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQ 101 (417)
T ss_dssp SEECCTTCC-----CCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH
T ss_pred CeeeecccC-----CCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHH
Confidence 455555433 3589999999988843 322111 11223233 344477887775543 55677899999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh--ccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhc
Q 013008 170 AAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA--LTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLI 242 (451)
Q Consensus 170 ~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l 242 (451)
.+++++. .++|+|++.+++|++....... ..+.. .....++. .|+++|++++
T Consensus 102 ~~~~~~~-----------~~gd~vl~~~~~~~~~~~~~~~~~~~g~~----------~~~~~~~~~~~~~~d~~~l~~~i 160 (417)
T 3n0l_A 102 GVYAALI-----------NPGDKILGMDLSHGGHLTHGAKVSSSGKM----------YESCFYGVELDGRIDYEKVREIA 160 (417)
T ss_dssp HHHHHHS-----------CTTCEEEEECC----------------CC----------SEEEEECCCTTSSCCHHHHHHHH
T ss_pred HHHHHhc-----------CCCCEEEecccccccccchhhhhhhhcce----------eeeEeccCCCCCCcCHHHHHHHH
Confidence 9999764 2689999999999875431111 11100 00111111 3899999999
Q ss_pred CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccccccccccCCCcceeeec--ccccC
Q 013008 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAG 319 (451)
Q Consensus 243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pdi~t~s--K~lg~ 319 (451)
+..++++|++.+.+ .|...+ +++|+++|++||++||+||+|. |+...|.... ... ..|++++| |++ +
T Consensus 161 ~~~~~~~v~~~~~~--~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l-~ 230 (417)
T 3n0l_A 161 KKEKPKLIVCGASA--YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS--PFP-YAHVVSSTTHKTL-R 230 (417)
T ss_dssp HHHCCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--CTT-TCSEEEEESSTTT-C
T ss_pred HhcCCeEEEECCcc--cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC--ccc-cceEEEeeCcccc-C
Confidence 73356677765433 355555 9999999999999999999973 3212221110 001 24777554 999 4
Q ss_pred Cccccccccc-HHHHhhccCCC-ccCCCCCcHHHHHHHHHHHHHhcChH---HHHH----------HHhCCCCcceec--
Q 013008 320 GLPIGAALVT-EKVASAINYGD-HGSTFAGSPLVCNAAIAVLDKISNPA---FLAS----------KLARNPHVKDVR-- 382 (451)
Q Consensus 320 G~~iG~v~~~-~~i~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~~~---~~~~----------~~~~~~~~~~v~-- 382 (451)
|+++|+++++ +++++.+.... +..+.+.++..++++.+++.....+. +.++ .++.. .+..+.
T Consensus 231 g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 309 (417)
T 3n0l_A 231 GPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDG 309 (417)
T ss_dssp SCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGS
T ss_pred CCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCC
Confidence 5678999998 78888775432 22233445666666666666533222 2211 12222 222222
Q ss_pred ccceeEEEEec---CChHHHHHHHHHCCceeeecCC---------CCEEEEeCCC----CCCHHHHHHHHHHHHHHHHHH
Q 013008 383 GLGLIIGIEFD---VSATPVVDACRDSGLLVLTAGK---------GNVVRLVPPL----IISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 383 g~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~~~---------~~~iri~~~~----~~t~e~i~~~l~~l~~~l~~~ 446 (451)
..+.++++.+. .....+.+.|.++||.+.+... .+.+|+.++. .++++++++++++|++++++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 310 TDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp CSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 23456777773 2567788888889999875421 2458887653 367999999999999998653
No 193
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.87 E-value=1.8e-20 Score=188.31 Aligned_cols=303 Identities=11% Similarity=0.042 Sum_probs=192.8
Q ss_pred CCHHHHHHHHHHHhhcccc---cCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 013008 115 GDADWIKAVVDQANVLTHV---SNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT 191 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~ 191 (451)
-+|++.+++.+++++.... ...+......+++++++++++.+.+++++||++|+..+++++. . .+++
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~--~--------~~gd 83 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALG--I--------GEGD 83 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTT--C--------CTTC
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCcC
Confidence 3689999999998774322 1112233478999999999997788999999999999999762 1 1578
Q ss_pred eEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHH
Q 013008 192 EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQ 270 (451)
Q Consensus 192 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~ 270 (451)
+||+.+++|++........+.... . .+..+ +.. -|+++|++++++ ++++|++++ +.|...+ ++
T Consensus 84 ~Vl~~~~~~~~~~~~~~~~g~~~~-~---~~~~~~~~~----~d~~~l~~~i~~-~~~~v~~~~---~~G~~~~----~~ 147 (418)
T 2c81_A 84 EVIVPSLTWIATATAVLNVNALPV-F---VDVEADTYC----IDPQLIKSAITD-KTKAIIPVH---LFGSMAN----MD 147 (418)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEE-E---ECBCTTTCS----BCHHHHGGGCCT-TEEEECCBC---CTTCCCC----HH
T ss_pred EEEECCCccHhHHHHHHHcCCEEE-E---EecCCCCCC----cCHHHHHHhhCC-CCeEEEEeC---CcCCccc----HH
Confidence 999999999988654432221111 0 01111 000 189999999975 577777654 3455444 99
Q ss_pred HHHHHHHHhCCEEEEeccccCCC-cccccccccccCCCcceeee--cccccCCccccccccc-HHHHhhccC---CC---
Q 013008 271 FLRDACDDAGALLVFDEVQCGLG-RTGYLWAHEHYGIFPDIMTL--AKPLAGGLPIGAALVT-EKVASAINY---GD--- 340 (451)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~tg~g-r~G~~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~~-~~i~~~~~~---~~--- 340 (451)
+|.++|++||++||+||+|+.+. ..+... ..++ ..++.+| +|.+++| ++|+++++ +++++.+.. ..
T Consensus 148 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~-~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~~~~~~~~~~ 223 (418)
T 2c81_A 148 EINEIAQEHNLFVIEDCAQSHGSVWNNQRA--GTIG-DIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQQLRADSRVY 223 (418)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETTEET--TSSS-SEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHHBTTEEE
T ss_pred HHHHHHHHCCCEEEEECcccccCccCCEec--cccc-ceEEEeccCCcccCCC-CeEEEEECCHHHHHHHHHHHHhCccc
Confidence 99999999999999999998664 223211 1111 2344566 8999887 99999984 777665532 10
Q ss_pred ----------cc------CCC----CCcHHHHHHHHHHHHHhcC-----hHHHH---HHHhCCCCccee-cccc----e-
Q 013008 341 ----------HG------STF----AGSPLVCNAAIAVLDKISN-----PAFLA---SKLARNPHVKDV-RGLG----L- 386 (451)
Q Consensus 341 ----------~~------~t~----~~~~~~~aaa~aal~~~~~-----~~~~~---~~~~~~~~~~~v-~g~G----~- 386 (451)
.. ... ..+++.++.+...++.++. ....+ +.++.+|.+... ...+ .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~ 303 (418)
T 2c81_A 224 CDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTY 303 (418)
T ss_dssp CSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCC
T ss_pred cccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCccccc
Confidence 00 001 1244444443333332211 01111 133445444332 2233 2
Q ss_pred -eEEEEec------CChHHHHHHHHHC-Cce---eeecCC---------------------------------------C
Q 013008 387 -IIGIEFD------VSATPVVDACRDS-GLL---VLTAGK---------------------------------------G 416 (451)
Q Consensus 387 -~~~~~~~------~~~~~~~~~l~~~-Gv~---~~~~~~---------------------------------------~ 416 (451)
++.+.+. .+..++.+.|.++ ||. +.++.. .
T Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (418)
T 2c81_A 304 YGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASG 383 (418)
T ss_dssp SEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHH
T ss_pred EEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHh
Confidence 2335553 2577899999999 999 765310 0
Q ss_pred CEEEEeCCCCC-CHHHHHHHHHHHHHHHHHHh
Q 013008 417 NVVRLVPPLII-SEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 417 ~~iri~~~~~~-t~e~i~~~l~~l~~~l~~~~ 447 (451)
+.+|+.++..+ |+||+++++++|++++++++
T Consensus 384 ~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~~ 415 (418)
T 2c81_A 384 QSIVIHHAILLAEPSHLSLLVDAVAELARKFC 415 (418)
T ss_dssp HEEEEEGGGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEecCCccCCCHHHHHHHHHHHHHHHHhhc
Confidence 37999999999 99999999999999987654
No 194
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.87 E-value=8.3e-21 Score=189.97 Aligned_cols=276 Identities=16% Similarity=0.151 Sum_probs=185.5
Q ss_pred CCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC
Q 013008 135 NMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE 214 (451)
Q Consensus 135 ~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~ 214 (451)
..+.++...+|+++++++++.+..++++||++|+..+++ +. .++++||+.++.||+.........
T Consensus 62 ~r~~~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l~-----------~~gd~Vl~~~~~y~~~~~~~~~~~--- 126 (403)
T 3cog_A 62 SRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-LL-----------KAGDQIICMDDVYGGTNRYFRQVA--- 126 (403)
T ss_dssp ----CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-TS-----------CTTCEEEEESSCCHHHHHHHHHTG---
T ss_pred cCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-Hh-----------CCCCEEEEeCCCcchHHHHHHHHH---
Confidence 445667788999999999986677777789999999988 43 158899999999987543211110
Q ss_pred CcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhC-CEEEEeccccCCC
Q 013008 215 HYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAG-ALLVFDEVQCGLG 293 (451)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g-~llI~DEv~tg~g 293 (451)
......+.+++.+|+++|++++++ ++++|+++++++++|.+.+ +++|.++|++|| +++|+||+|+++.
T Consensus 127 ------~~~G~~v~~v~~~d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~ 195 (403)
T 3cog_A 127 ------SEFGLKISFVDCSKIKLLEAAITP-ETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPY 195 (403)
T ss_dssp ------GGGTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTT
T ss_pred ------HHcCCEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCcccc
Confidence 011234566777799999999975 6889999998888888776 999999999999 9999999997652
Q ss_pred cccccccccccCCCccee--eecccccC-C-ccccccccc-HHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC--hH
Q 013008 294 RTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVT-EKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN--PA 366 (451)
Q Consensus 294 r~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~-~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~ 366 (451)
.+.. .+..+|++ +++|.+++ | .++|+++++ +++++.+.......+...+|+.++++..+++.+.. +.
T Consensus 196 -~~~~-----~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~~r~~~ 269 (403)
T 3cog_A 196 -FQRP-----LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEK 269 (403)
T ss_dssp -TCCT-----TTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHH
T ss_pred -cCCc-----cccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHHHHHH
Confidence 2221 12346766 78899985 4 689999985 78888775433334455788888888777764311 11
Q ss_pred HHHH------HHhCC--------------CCcc----eecccceeEEEEecCChHHHHHHHHHCCceeee---c------
Q 013008 367 FLAS------KLARN--------------PHVK----DVRGLGLIIGIEFDVSATPVVDACRDSGLLVLT---A------ 413 (451)
Q Consensus 367 ~~~~------~~~~~--------------~~~~----~v~g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~---~------ 413 (451)
..++ +++++ |.+. ..++.|.++.|.+........+.|.+.|++... +
T Consensus 270 ~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~ 349 (403)
T 3cog_A 270 HFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLA 349 (403)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCSSSSCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCcceee
Confidence 1111 23332 2111 122458888888853344556666677875431 1
Q ss_pred -------------------CC-CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 013008 414 -------------------GK-GNVVRLVPPLIISEQELDQAVEILCKT 442 (451)
Q Consensus 414 -------------------~~-~~~iri~~~~~~t~e~i~~~l~~l~~~ 442 (451)
+. .+.+|+++....++++|+.+.+.|+++
T Consensus 350 ~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~ 398 (403)
T 3cog_A 350 ELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAA 398 (403)
T ss_dssp ECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 11 368999999877666666666655544
No 195
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.87 E-value=1.8e-20 Score=188.67 Aligned_cols=278 Identities=21% Similarity=0.155 Sum_probs=184.6
Q ss_pred cccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhcc
Q 013008 132 HVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALT 211 (451)
Q Consensus 132 ~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~ 211 (451)
+.+..+.++...+++++++++++.+..++++||++|+..+++.+. .++++||+.++.||+.........
T Consensus 50 ~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~~-----------~~gd~vi~~~~~~~~~~~~~~~~~ 118 (421)
T 2ctz_A 50 NIYSRIMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLA-----------QAGDNIVSTPNLYGGTFNQFKVTL 118 (421)
T ss_dssp GSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHC-----------CTTCEEEECSCCCHHHHHHHHTHH
T ss_pred CcccCCCChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHHh-----------CCCCEEEEeCCCchHHHHHHHHHH
Confidence 334445666789999999999997777888899999999999763 158999999999998764432111
Q ss_pred CCCCcCCCCcCCCCCeeEe-eCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc
Q 013008 212 SKEHYRSPFEPVMPGVNFV-EYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC 290 (451)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~-~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t 290 (451)
. .....+.++ +.+|+++|++++++ ++++|+++++++++|.+.+ +++|+++|++||+++|+||+|+
T Consensus 119 ~---------~~g~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~ 184 (421)
T 2ctz_A 119 K---------RLGIEVRFTSREERPEEFLALTDE-KTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFG 184 (421)
T ss_dssp H---------HTTCEEEECCTTCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGG
T ss_pred H---------HcCCEEEEECCCCCHHHHHHhhcc-CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcc
Confidence 0 011234556 66799999999975 6899999999999898776 9999999999999999999996
Q ss_pred CCCcccccccccccCCCccee--eecccccC-Cccccccccc---HHH----HhhccCC---Ccc---------------
Q 013008 291 GLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALVT---EKV----ASAINYG---DHG--------------- 342 (451)
Q Consensus 291 g~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~~---~~i----~~~~~~~---~~~--------------- 342 (451)
++|+.+..+ +..+|++ +++|.+++ |.++|++++. +++ .+.+.+. .++
T Consensus 185 ~~g~~~~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~ 259 (421)
T 2ctz_A 185 MGGYLLRPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVK 259 (421)
T ss_dssp GGGTSCCGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHH
T ss_pred cccccCCcc-----ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHH
Confidence 676554432 2347887 78899986 6888887763 122 1122111 111
Q ss_pred --------CCCCCcHHHHHHHHHHHHHhcC--hHH------HHHHHhCCCCccee-------------------ccccee
Q 013008 343 --------STFAGSPLVCNAAIAVLDKISN--PAF------LASKLARNPHVKDV-------------------RGLGLI 387 (451)
Q Consensus 343 --------~t~~~~~~~~aaa~aal~~~~~--~~~------~~~~~~~~~~~~~v-------------------~g~G~~ 387 (451)
.....+|+.++++...++.+.. +.. +.+.++.+|.+..+ ++.|.+
T Consensus 260 ~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~i 339 (421)
T 2ctz_A 260 ARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAV 339 (421)
T ss_dssp HHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceE
Confidence 1235678888887777765321 111 11144566655443 467889
Q ss_pred EEEEecCC---hHHHHHHHHHCCceeeec-------------------------C-CCCEEEEeCCCCCCHHHHHHHHHH
Q 013008 388 IGIEFDVS---ATPVVDACRDSGLLVLTA-------------------------G-KGNVVRLVPPLIISEQELDQAVEI 438 (451)
Q Consensus 388 ~~~~~~~~---~~~~~~~l~~~Gv~~~~~-------------------------~-~~~~iri~~~~~~t~e~i~~~l~~ 438 (451)
+.|++... ...+.+.|...++.+..+ + ..+.+|+++.+ |+++++++.
T Consensus 340 vsf~l~~~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~----e~~~~li~~ 415 (421)
T 2ctz_A 340 LTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL----EHVEDLKAE 415 (421)
T ss_dssp EEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS----SCHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHH
Confidence 99998532 222333332222222111 1 12678997654 578888888
Q ss_pred HHHHH
Q 013008 439 LCKTL 443 (451)
Q Consensus 439 l~~~l 443 (451)
|++++
T Consensus 416 l~~al 420 (421)
T 2ctz_A 416 LKEAL 420 (421)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88765
No 196
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.87 E-value=4e-21 Score=192.07 Aligned_cols=318 Identities=10% Similarity=0.080 Sum_probs=193.5
Q ss_pred EEEeeccCcccccCCC--CCHHHHHHHHHHH-hhc-ccc--cCCCCCHHHHHHHHHHhhccC----CCe--EEecCCHHH
Q 013008 99 EYLDLSSGIAVNALGH--GDADWIKAVVDQA-NVL-THV--SNMYYSIPQIELAKRLVACSF----ADR--VFFSNTGTE 166 (451)
Q Consensus 99 ~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~-~~~-~~~--~~~~~~~~~~~l~~~l~~~~~----~e~--v~~~~sG~e 166 (451)
..|||..|.+...=|. .++.|.+|+. .+ +.. .+. ...+..+.++++++++....+ .++ +++|+||++
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~ 108 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTG 108 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHH
Confidence 4688887764332232 4678888876 43 221 121 122233345666666644432 243 689999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCC-CC-CeeEeeCCCHHHHHHhcCC
Q 013008 167 ANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPV-MP-GVNFVEYGNIEATRKLIQP 244 (451)
Q Consensus 167 A~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~d~~~le~~l~~ 244 (451)
|+..+++++..+. + |.|++.+|+|.++.......+.... . .|+ .+ +... |+++|++.+..
T Consensus 109 al~~~~~~l~~~~---------~-d~Vlv~~P~y~~~~~~~~~~g~~~~-~---v~~~~~~~~~~----d~~~l~~~l~~ 170 (405)
T 3k7y_A 109 AIFVLLEFLKMLN---------V-ETLYVTNPPYINHVNMIESRGFNLK-Y---INFFDYNLIDI----NYDLFLNDLRN 170 (405)
T ss_dssp HHHHHHHHHHTTT---------C-CEEEEESSCCHHHHHHHHTTTCEEE-E---ECCEETTTTEE----CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---------C-CEEEEeCCCCHhHHHHHHHcCCeEE-E---EeccccccCCc----CHHHHHHHHHh
Confidence 9999999777321 5 8999999999988655433332211 1 111 01 1111 78999998862
Q ss_pred -CCeEEEEEccc-cCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---ccccccc-CCCcc---eeeecc
Q 013008 245 -GKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHEHY-GIFPD---IMTLAK 315 (451)
Q Consensus 245 -~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~~~-~~~pd---i~t~sK 315 (451)
...+++++.|. ++++| ..++.+.+++|.++|++||+++|+||+|.+|...+. ......+ ..... +.+|||
T Consensus 171 ~~~~~~i~l~~~~~NPTG-~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 249 (405)
T 3k7y_A 171 IPNGSSVILQISCYNPCS-VNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSK 249 (405)
T ss_dssp SCSSCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTT
T ss_pred CCCCeEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCc
Confidence 34567777665 45555 468999999999999999999999999998854321 1111111 11222 448999
Q ss_pred ccc-CCcccccccc---cHHHHhhccCC---CccCCC-CCcHHHHHHHHHHHHHhc-ChHHH-----------HH-----
Q 013008 316 PLA-GGLPIGAALV---TEKVASAINYG---DHGSTF-AGSPLVCNAAIAVLDKIS-NPAFL-----------AS----- 370 (451)
Q Consensus 316 ~lg-~G~~iG~v~~---~~~i~~~~~~~---~~~~t~-~~~~~~~aaa~aal~~~~-~~~~~-----------~~----- 370 (451)
.++ .|+|+||+++ ++++++.+... ....++ +.+.++++++.++|+.-. .+.|. ++
T Consensus 250 ~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~ 329 (405)
T 3k7y_A 250 NMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFF 329 (405)
T ss_dssp TSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 6999999753 67666544211 111233 345677777776665210 01111 11
Q ss_pred -HHh----CCCC---cceecc-cceeEEEEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008 371 -KLA----RNPH---VKDVRG-LGLIIGIEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCK 441 (451)
Q Consensus 371 -~~~----~~~~---~~~v~g-~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~ 441 (451)
.++ +++. +....+ .|+++|+.++. ++++.|.++||++.|++ ||+++ ..++++|++++++|.+
T Consensus 330 ~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~---~~~~~L~~~gV~v~p~~-----Ris~a-~~~~~~i~~~~~~i~~ 400 (405)
T 3k7y_A 330 NKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA---KIAEHLKTHHIYIINNG-----RINVS-GITKNNVDYIADKICL 400 (405)
T ss_dssp HHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG---GGTTTTTTTTEECCTTS-----EEEGG-GCCTTHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCCCCCccccCCceEEEecCCCH---HHHHHHHHCCEeecCCC-----eEEEe-ccCHHHHHHHHHHHHH
Confidence 223 3321 233333 46666655432 44566777899999853 77644 3578899999999999
Q ss_pred HHHH
Q 013008 442 TLPV 445 (451)
Q Consensus 442 ~l~~ 445 (451)
++++
T Consensus 401 ~~~~ 404 (405)
T 3k7y_A 401 SLSQ 404 (405)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 8864
No 197
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.86 E-value=1.7e-20 Score=184.07 Aligned_cols=290 Identities=10% Similarity=-0.036 Sum_probs=188.4
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCC---HHHHHHHHHHhhccC---CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008 115 GDADWIKAVVDQANVLTHVSNMYYS---IPQIELAKRLVACSF---ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~---~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~ 188 (451)
.+|++.+++.+++.+.......... +...++.++++++++ .+++++++||++|+..+++.+.
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~------------ 82 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV------------ 82 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC------------
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc------------
Confidence 5788999988887663311111111 235778888888876 4679999999999999999665
Q ss_pred CCceEEEEcCCccCChhh-hhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 013008 189 PATEFVSFTNSFHGRTMG-ALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGIY 262 (451)
Q Consensus 189 ~~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~~~G~~ 262 (451)
.+ ++++..+.+++.... .....+. .+..++. -|+++|+ +. +++++|+++++++++|.+
T Consensus 83 ~~-~~i~~~~~~~~~~~~~~~~~~g~------------~~~~v~~~~~~~~d~~~l~--~~-~~~~~v~~~~~~nptG~~ 146 (362)
T 3ffr_A 83 EK-KSFHCVNGSFSKRFYEFAGELGR------------EAYKEEAAFGKGFYPADIT--VP-ADAEIICLTHNETSSGVS 146 (362)
T ss_dssp SS-EEEEEECSHHHHHHHHHHHHTTC------------EEEEEECCTTCCCCGGGCC--CC-TTCCEEEEESEETTTTEE
T ss_pred CC-cEEEEcCcHHHHHHHHHHHHhCC------------CeEEEecCCCCCCCHHHHh--cc-CCccEEEEEcCCCCccee
Confidence 23 666666655553211 1111121 1112221 1677777 43 467788887778888877
Q ss_pred ccCHHHHHHHHHHHHHh-CCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcccccccccHHHHhhccCC
Q 013008 263 SATKEFLQFLRDACDDA-GALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAINYG 339 (451)
Q Consensus 263 ~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~~~ 339 (451)
.+ +++|.++|++| |+++|+||+|+..... ... .. .|++ +++|.++++..+|++++++++++.+.+.
T Consensus 147 ~~----l~~i~~la~~~p~~~li~D~a~~~~~~~---~~~--~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~ 215 (362)
T 3ffr_A 147 MP----VEDINTFRDKNKDALIFVDAVSSLPYPK---FDW--TK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKAL 215 (362)
T ss_dssp CC----HHHHTTSGGGSTTSEEEEECTTTTTSSC---CCT--TS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHH
T ss_pred CC----HHHHHHHHHhCCCCEEEEecccccCCcc---cCh--hH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhc
Confidence 76 99999999999 9999999998632111 111 11 5666 4569998544467788888887765431
Q ss_pred Cc--------------------cC-CCCCcHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCCcceec---
Q 013008 340 DH--------------------GS-TFAGSPLVCNAAIAVLDKISNP---AFLAS----------KLARNPHVKDVR--- 382 (451)
Q Consensus 340 ~~--------------------~~-t~~~~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~~~~v~--- 382 (451)
.. .. .++.+..++.++.++++.+... ...++ .++++|.+....
T Consensus 216 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 295 (362)
T 3ffr_A 216 LAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDA 295 (362)
T ss_dssp HHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCG
T ss_pred cccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCCh
Confidence 11 11 3445677777777777754322 22221 334455443322
Q ss_pred --ccceeEEEEecCChHHHHHHHHHCCceeeecC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 383 --GLGLIIGIEFDVSATPVVDACRDSGLLVLTAG---KGNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 383 --g~G~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~---~~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
..+.++++.+..+..++.+.|.++||.+.++. .++.+|+++....++|++++++++|++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 296 KLRSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp GGBCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 13556777774467889999999999998752 24789999998899999999999998764
No 198
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.85 E-value=1.2e-19 Score=186.60 Aligned_cols=326 Identities=10% Similarity=0.040 Sum_probs=193.6
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHH----HHHHHHHHhhccCC---CeEEecCCHHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIP----QIELAKRLVACSFA---DRVFFSNTGTEAN 168 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~---e~v~~~~sG~eA~ 168 (451)
.+..|+|+..+ +..+|.+.+++....-.. +.......+. ..++.++|+++++. +.++|++||++|+
T Consensus 99 ~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~-~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~ 171 (497)
T 2qma_A 99 QHPDCIAHLHT------PPLMPAVAAEAMIAALNQ-SMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSN 171 (497)
T ss_dssp TSTTBCSSSCC------CCBHHHHHHHHHHHHHCC-CTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHH
T ss_pred CCCCeeEeCCC------CCcHHHHHHHHHHHhhcc-cccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHH
Confidence 45677776654 346788888776554321 1111111222 44556668888873 7899999999999
Q ss_pred HHHHHHHHHHhhh---------cCCCCCCC--Cc-eEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC---
Q 013008 169 EAAIKFARKFQRH---------SNPDSKEP--AT-EFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG--- 233 (451)
Q Consensus 169 ~~al~~a~~~~~~---------~~~~~~~~--~~-~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 233 (451)
..+++++|.+... .+.. + ++ .|++. ...|.+...+....+... ..++.+|.+
T Consensus 172 ~~al~~ar~~~~~~~~~~~~~~~G~~---~~~g~~~v~~s-~~~h~s~~~~~~~~g~g~---------~~v~~v~~~~~~ 238 (497)
T 2qma_A 172 QMGLMLARDWIADKLSGHSIQKLGLP---DYADKLRIVCS-KKSHFTVQKSASWMGLGE---------KAVMTVDANADG 238 (497)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCSC---GGGGGEEEEEE-TTSCTHHHHHHHHTTSCG---------GGEEEECBCTTS
T ss_pred HHHHHHHHHHHHHhhcccchhhcccc---cccCCeEEEEC-CCchHHHHHHHHHcCCCc---------ccEEEEecCCCC
Confidence 9999998753210 0000 1 34 45554 445555444433322100 023334433
Q ss_pred --CHHHHHHhcCCC----C-eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC
Q 013008 234 --NIEATRKLIQPG----K-TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI 306 (451)
Q Consensus 234 --d~~~le~~l~~~----~-~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~ 306 (451)
|+++|+++|++. . +.+|++...++++|.+.+ +++|+++|++||++|++|++|.++..... +.....++
T Consensus 239 ~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi 313 (497)
T 2qma_A 239 TMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGV 313 (497)
T ss_dssp SBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTG
T ss_pred cCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCc
Confidence 788999888631 2 346666655666677666 99999999999999999999987755443 33333455
Q ss_pred -Ccceeee--cccccCCcccccccccH-HHHhhccCCC----ccCCCCCcHHH----------HHHHHHHHHHhcChHH-
Q 013008 307 -FPDIMTL--AKPLAGGLPIGAALVTE-KVASAINYGD----HGSTFAGSPLV----------CNAAIAVLDKISNPAF- 367 (451)
Q Consensus 307 -~pdi~t~--sK~lg~G~~iG~v~~~~-~i~~~~~~~~----~~~t~~~~~~~----------~aaa~aal~~~~~~~~- 367 (451)
.+|++++ +|.+++++++|++++++ ..++.+.... ...+...++.. ..+..++++.+..+.+
T Consensus 314 ~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~ 393 (497)
T 2qma_A 314 ERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALG 393 (497)
T ss_dssp GGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHH
T ss_pred ccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHH
Confidence 6888876 89998778999998764 4445443210 00000112111 1122334554432211
Q ss_pred --HHH----------HHhCCCCccee-cccceeEEEEecCC-------hHHHHHHHHHCCceeeecC---CCCEEEEeC-
Q 013008 368 --LAS----------KLARNPHVKDV-RGLGLIIGIEFDVS-------ATPVVDACRDSGLLVLTAG---KGNVVRLVP- 423 (451)
Q Consensus 368 --~~~----------~~~~~~~~~~v-~g~G~~~~~~~~~~-------~~~~~~~l~~~Gv~~~~~~---~~~~iri~~- 423 (451)
.++ .++..+.+..+ ...+.++.|.+... ..++.+.|.++|+.+.+.. ...++|+++
T Consensus 394 ~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~ 473 (497)
T 2qma_A 394 DMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTIL 473 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEec
Confidence 111 33445544322 34455777776321 2457788889999886531 125799987
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 013008 424 PLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 424 ~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
+..+|++|+++++++|+++++++
T Consensus 474 ~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 474 NPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999988764
No 199
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.85 E-value=8.9e-20 Score=181.90 Aligned_cols=293 Identities=10% Similarity=0.092 Sum_probs=187.1
Q ss_pred CHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q 013008 116 DADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVS 195 (451)
Q Consensus 116 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~ 195 (451)
+|++.+++.+.++.. +. ....+...++++.++++++.+++++++||++|+..+++++. . .++++|++
T Consensus 11 ~~~v~~a~~~~~~~~-~~--~~~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~--~--------~~gd~Vl~ 77 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-YI--APLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAG--V--------KQDDIVLA 77 (394)
T ss_dssp -CCHHHHHHHHHHHT-TT--SCTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT--C--------CTTCEEEE
T ss_pred CHHHHHHHHHHHHcC-Cc--cCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC--C--------CCCCEEEE
Confidence 467888888887652 11 11124478999999999998999999999999999999762 1 15889999
Q ss_pred EcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC--CeEEEEEccccCCCCccccCHHHHHHHH
Q 013008 196 FTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG--KTAAVFVEPIQGEGGIYSATKEFLQFLR 273 (451)
Q Consensus 196 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~aavi~ep~~~~~G~~~~~~~~l~~l~ 273 (451)
.+++|++........+..... .+...+. ..|+++|++++++. ++++|++++. .|...+ +++|.
T Consensus 78 ~~~~~~~~~~~~~~~g~~~~~----v~~~~~~----~~d~~~l~~~i~~~~~~~~~v~~~~~---~G~~~~----l~~i~ 142 (394)
T 1o69_A 78 SSFTFIASVAPICYLKAKPVF----IDCDETY----NIDVDLLKLAIKECEKKPKALILTHL---YGNAAK----MDEIV 142 (394)
T ss_dssp ESSSCGGGTHHHHHTTCEEEE----ECBCTTS----SBCHHHHHHHHHHCSSCCCEEEEECG---GGCCCC----HHHHH
T ss_pred CCCccHHHHHHHHHcCCEEEE----EEeCCCC----CcCHHHHHHHHhcccCCceEEEEECC---CCChhh----HHHHH
Confidence 999999886544332211110 0111110 12789999988632 5778888763 344444 99999
Q ss_pred HHHHHhCCEEEEecccc-CCCcccccccccccCCCcceeeec--ccccCCccccccccc-HHHHhhccCCC-c-------
Q 013008 274 DACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVT-EKVASAINYGD-H------- 341 (451)
Q Consensus 274 ~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~-~~i~~~~~~~~-~------- 341 (451)
++|++||+++|+||+|+ |+.+.|.... .++ .+|+.++| |.++ |.++|+++++ +++++.+.... .
T Consensus 143 ~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~ 218 (394)
T 1o69_A 143 EICKENDIVLIEDAAEALGSFYKNKALG--TFG-EFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCLH 218 (394)
T ss_dssp HHHHHTTCEEEEECTTCTTCEETTEETT--SSS-SEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSSS
T ss_pred HHHHHcCCEEEEECcCcccceeCCcccc--ccc-CcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCcc
Confidence 99999999999999998 6544443211 111 36788884 6665 4589999995 78877664211 0
Q ss_pred ------cCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceecc-----cce-eEEEEecC-----
Q 013008 342 ------GSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVRG-----LGL-IIGIEFDV----- 394 (451)
Q Consensus 342 ------~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~g-----~G~-~~~~~~~~----- 394 (451)
+..+..+++.++++++.++.+++ ..++ .++.. +..... .+. ++++.++.
T Consensus 219 ~~~~~~g~~~~~~~~~aa~~l~~l~~l~~--~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 294 (394)
T 1o69_A 219 YEHLDYGYNYRLSNVLGAIGVAQMEVLEQ--RVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNEL 294 (394)
T ss_dssp CCCSSCCCBCBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGS
T ss_pred ccccccCcccCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhcc
Confidence 11122466777776665554322 1111 22222 211111 122 35566542
Q ss_pred ------------------ChHHHHHHHHHCCceeeecCCC-----------------------CEEEEeCCCCCCHHHHH
Q 013008 395 ------------------SATPVVDACRDSGLLVLTAGKG-----------------------NVVRLVPPLIISEQELD 433 (451)
Q Consensus 395 ------------------~~~~~~~~l~~~Gv~~~~~~~~-----------------------~~iri~~~~~~t~e~i~ 433 (451)
...++.+.|.++||.+.++... ..+++.....+|+||++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~ 374 (394)
T 1o69_A 295 NACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVY 374 (394)
T ss_dssp CCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred ccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHH
Confidence 3567899999999998865210 23444446668999999
Q ss_pred HHHHHHHHHHH
Q 013008 434 QAVEILCKTLP 444 (451)
Q Consensus 434 ~~l~~l~~~l~ 444 (451)
+++++|+++++
T Consensus 375 ~~~~~l~~~~~ 385 (394)
T 1o69_A 375 EISKLILKSIK 385 (394)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 200
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.84 E-value=1.1e-18 Score=173.64 Aligned_cols=299 Identities=13% Similarity=0.106 Sum_probs=192.2
Q ss_pred cCCC--CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008 111 ALGH--GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188 (451)
Q Consensus 111 ~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~ 188 (451)
+++. -+|++.+++.+++++.. .+......++++.++++++.+.+++++||++|+..+++.++. ....+ ..
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~-~~~~~---~~ 78 (390)
T 3b8x_A 7 PLASSTWDDLEYKAIQSVLDSKM----FTMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFF-TKKPR---LK 78 (390)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTC----CSSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTS-SSSCS---CC
T ss_pred cCCCCCCCHHHHHHHHHHHHcCC----CCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHh-hhhcC---CC
Confidence 3444 47899999999887632 234566889999999999987899999999999999997631 00000 02
Q ss_pred CCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-CHHHHHHhcCCCCeEEEEEccccCCCCccccCHH
Q 013008 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKE 267 (451)
Q Consensus 189 ~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~ 267 (451)
++++|++..++||+........+.... . .+..++. +. |+++|++++++ ++++|++.+.. |...+
T Consensus 79 ~g~~Vi~~~~~~~~~~~~~~~~g~~~~-~---~~~~~~~----~~~d~~~l~~~i~~-~~~~v~~~~~~---g~~~~--- 143 (390)
T 3b8x_A 79 KGDEIIVPAVSWSTTYYPLQQYGLRVK-F---VDIDINT----LNIDIESLKEAVTD-STKAILTVNLL---GNPNN--- 143 (390)
T ss_dssp TTCEEEEESSSCHHHHHHHHHTTCEEE-E---ECBCTTT----CSBCHHHHHHHCCT-TEEEEEEECGG---GCCCC---
T ss_pred CcCEEEECCCCcHHHHHHHHHcCCEEE-E---EecCccc----cCcCHHHHHHHhCc-CCeEEEEECCc---cChhh---
Confidence 578999999999987654432221111 0 1111110 11 89999999975 56777765332 33334
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccCCc---ccccccccH-HHHhhccC---CC
Q 013008 268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGGL---PIGAALVTE-KVASAINY---GD 340 (451)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G~---~iG~v~~~~-~i~~~~~~---~~ 340 (451)
+++|.++|++||+++|+||+|+ +|... ....++..+|+.++||..+.++ ..|++++++ ++.+.+.+ ..
T Consensus 144 -~~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g 218 (390)
T 3b8x_A 144 -FDEINKIIGGRDIILLEDNCES-MGATF---NNKCAGTFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHG 218 (390)
T ss_dssp -HHHHHHHHTTSCCEEEEECTTC-TTCEE---TTEETTSSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTT
T ss_pred -HHHHHHHHHHcCCEEEEECcCc-ccCEE---CCcccccccceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcC
Confidence 9999999999999999999997 22111 1234577789999887554221 347777775 66543321 11
Q ss_pred ----------------------------ccCCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceec
Q 013008 341 ----------------------------HGSTFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVR 382 (451)
Q Consensus 341 ----------------------------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~ 382 (451)
.+.++..+++.++++++.++.++. ..++ .++.+|.+....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~--~~~~~~~~~~~l~~~L~~~~~~~~~~ 296 (390)
T 3b8x_A 219 WTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLPR--FISVRRKNAEYFLDKFKDHPYLDVQQ 296 (390)
T ss_dssp BSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCSSEEECC
T ss_pred CCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCCcccCC
Confidence 112333678888888887876532 1111 234454332221
Q ss_pred --ccce--eEEEEec----CChHHHHHHHHHCCceeeec-------C-C--C------------------CEEEEeCCCC
Q 013008 383 --GLGL--IIGIEFD----VSATPVVDACRDSGLLVLTA-------G-K--G------------------NVVRLVPPLI 426 (451)
Q Consensus 383 --g~G~--~~~~~~~----~~~~~~~~~l~~~Gv~~~~~-------~-~--~------------------~~iri~~~~~ 426 (451)
.... .+.+.+. ....++.+.|.++||.+.+. . . . +.+|+.+...
T Consensus 297 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 376 (390)
T 3b8x_A 297 ETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQI 376 (390)
T ss_dssp CCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSS
T ss_pred CCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCC
Confidence 1222 2444554 25778999999999988752 1 0 0 2589999999
Q ss_pred CCHHHHHHHHHHH
Q 013008 427 ISEQELDQAVEIL 439 (451)
Q Consensus 427 ~t~e~i~~~l~~l 439 (451)
+|+||++++++.|
T Consensus 377 ~t~~di~~i~~~l 389 (390)
T 3b8x_A 377 ELFDEIDYLREVL 389 (390)
T ss_dssp CCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999876
No 201
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.83 E-value=1.5e-19 Score=181.27 Aligned_cols=280 Identities=13% Similarity=0.040 Sum_probs=183.4
Q ss_pred ccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc
Q 013008 131 THVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL 210 (451)
Q Consensus 131 ~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~ 210 (451)
.+.++.+.++...+++++++++.+.+.+++++||++|+..+++.+. .++|+||+.++.|++........
T Consensus 73 ~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l~-----------~~Gd~Vi~~~~~y~~~~~~~~~~ 141 (415)
T 2fq6_A 73 ELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFI-----------EQGDHVLMTNTAYEPSQDFCSKI 141 (415)
T ss_dssp SCCCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTTC-----------CTTCEEEEETTSCHHHHHHHHHT
T ss_pred CccccCCCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHh-----------CCCCEEEEeCCCchHHHHHHHHH
Confidence 3445666778899999999999998888888999999999998543 15899999999998754221111
Q ss_pred cCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHH--hCCEEEEecc
Q 013008 211 TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD--AGALLVFDEV 288 (451)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv 288 (451)
. ......+.+++.+|+++|++++++ ++++|++|.++++.|.+.+ +++|.++|++ ||+++|+||+
T Consensus 142 l---------~~~G~~v~~v~~~d~~~le~ai~~-~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a 207 (415)
T 2fq6_A 142 L---------SKLGVTTSWFDPLIGADIVKHLQP-NTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNT 207 (415)
T ss_dssp G---------GGGTCEEEEECTTCGGGGGGGCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECT
T ss_pred H---------HHcCcEEEEECCCCHHHHHHhhcc-CCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECC
Confidence 0 011234566777899999999975 6889999998888888776 9999999999 9999999999
Q ss_pred ccCCCcccccccccccCCCccee--eecccccC-C-cccccccccHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcC
Q 013008 289 QCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISN 364 (451)
Q Consensus 289 ~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 364 (451)
|... ...... ....|++ +++|.+++ | ..+|++++++++++.+...........+|..+++++..++.+..
T Consensus 208 ~a~~-~~~~p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~l~~ 281 (415)
T 2fq6_A 208 WAAG-VLFKAL-----DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGV 281 (415)
T ss_dssp TTTT-TSSCGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred Cccc-ccCCcc-----ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHHH
Confidence 9632 222211 2235766 67899986 4 45789988888777665322111223467766666666654321
Q ss_pred --hHHHHH------HHhCCCCccee------------------cccceeEEEEecCC--hH---HHHHHHHHCCcee---
Q 013008 365 --PAFLAS------KLARNPHVKDV------------------RGLGLIIGIEFDVS--AT---PVVDACRDSGLLV--- 410 (451)
Q Consensus 365 --~~~~~~------~~~~~~~~~~v------------------~g~G~~~~~~~~~~--~~---~~~~~l~~~Gv~~--- 410 (451)
+...++ .++++|.+..+ ++.|.+++|.+... .. .+.+.|...++.+
T Consensus 282 r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G 361 (415)
T 2fq6_A 282 RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWG 361 (415)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCC
Confidence 111111 34444432221 24678889988531 22 2333221112111
Q ss_pred -------e--e-----------cC-CCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 013008 411 -------L--T-----------AG-KGNVVRLVPPLIISEQELDQAVEILCK 441 (451)
Q Consensus 411 -------~--~-----------~~-~~~~iri~~~~~~t~e~i~~~l~~l~~ 441 (451)
. | .+ .++.+|+++....++++++.+.++|++
T Consensus 362 ~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 362 GYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp SSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 1 1 11 136899999998888888888877764
No 202
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.83 E-value=1.8e-18 Score=174.93 Aligned_cols=312 Identities=16% Similarity=0.099 Sum_probs=192.8
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHH
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFA 175 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a 175 (451)
+|+++|.|.... -+|++.+++.+++.... .++.....++++.++++++.+.+++++||++|+..+++++
T Consensus 29 ~~~~~i~~~~~~-------~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~al~~l 97 (437)
T 3bb8_A 29 AGKSVVPPSGKV-------IGTKELQLMVEASLDGW----LTTGRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTAL 97 (437)
T ss_dssp TTTSCBCSCCCC-------CCHHHHHHHHHHHHHCC----CBSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHT
T ss_pred CCCccccCCCCC-------CCHHHHHHHHHHHHcCC----cCCChHHHHHHHHHHHHHCCCcEEEeCCHHHHHHHHHHHh
Confidence 466677764321 25889999999887632 2345668899999999999889999999999999999876
Q ss_pred HHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCCeEEEEEcc
Q 013008 176 RKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEP 254 (451)
Q Consensus 176 ~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~aavi~ep 254 (451)
..+.-.+.. ..++++|++.+++||+........+.... . .+..+ +... |+++|++++.+ ++++|++..
T Consensus 98 ~~~~~~~~~--~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~-~---v~~~~~~~~~----d~~~l~~~i~~-~~~~v~~~~ 166 (437)
T 3bb8_A 98 TSPKLGVRA--LKPGDEVITVAAGFPTTVNPTIQNGLIPV-F---VDVDIPTYNV----NASLIEAAVSD-KTKAIMIAH 166 (437)
T ss_dssp TCGGGGGGS--CCTTCEEEECSSSCHHHHHHHHHTTCEEE-E---CCEETTTTEE----CGGGHHHHCCT-TEEEEEEEC
T ss_pred hhccccccc--CCCcCEEEECCCCcHHHHHHHHHcCCEEE-E---EeccCccCCc----CHHHHHHhcCC-CCeEEEEeC
Confidence 210000000 01578999999999887654433221111 1 11111 1111 78899999975 567776643
Q ss_pred ccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccccccccccCCCcceee--ec--ccccCCccccccccc
Q 013008 255 IQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYLWAHEHYGIFPDIMT--LA--KPLAGGLPIGAALVT 329 (451)
Q Consensus 255 ~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~~~~~~~~~pdi~t--~s--K~lg~G~~iG~v~~~ 329 (451)
.. |...+ +++|.++|++||+++|+||+|+ |....+ ...+..+|+++ |+ |.+++ .++|+++++
T Consensus 167 ~~---g~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~~~~d~~~~s~~~~k~l~~-g~gg~~~~~ 233 (437)
T 3bb8_A 167 TL---GNLFD----LAEVRRVADKYNLWLIEDCCDALGSTYDG-----KMAGTFGDIGTVSFYPAKHITM-GEGGAVFTQ 233 (437)
T ss_dssp GG---GCCCC----HHHHHHHHHHHTCEEEEECTTCTTCEETT-----EETTSSSSEEEEECSTTSSSCC-SSCEEEEES
T ss_pred CC---CChhc----HHHHHHHHHHcCCEEEEECccccCceECC-----eecccccCEEEEECcCCcCCCC-CCeEEEEeC
Confidence 22 32233 9999999999999999999997 332211 23344478754 43 55643 467888887
Q ss_pred HHH-Hhh---ccCCC------------------------------------ccCCCCCcHHHHHHHHHHHHHhcChHHHH
Q 013008 330 EKV-ASA---INYGD------------------------------------HGSTFAGSPLVCNAAIAVLDKISNPAFLA 369 (451)
Q Consensus 330 ~~i-~~~---~~~~~------------------------------------~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 369 (451)
++. .+. +.... .+..+..+++.+++++++|+.+. ++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~~~--~~~~ 311 (437)
T 3bb8_A 234 SAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERIE--EFVE 311 (437)
T ss_dssp CHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHHHH--HHHH
T ss_pred CHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHHHH--HHHH
Confidence 543 332 11110 11122346888888888887642 2222
Q ss_pred H----------HHhCCCCcceecc------cce-eEEEEec----CChHHHHHHHHHCCceeeecCCC------------
Q 013008 370 S----------KLARNPHVKDVRG------LGL-IIGIEFD----VSATPVVDACRDSGLLVLTAGKG------------ 416 (451)
Q Consensus 370 ~----------~~~~~~~~~~v~g------~G~-~~~~~~~----~~~~~~~~~l~~~Gv~~~~~~~~------------ 416 (451)
+ .++.++.+..+.. .+. .+.+.+. ....++.+.|.++||.+.++..+
T Consensus 312 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~ 391 (437)
T 3bb8_A 312 KRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVK 391 (437)
T ss_dssp HHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCC
T ss_pred HHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHHHCCCceeccCCcccccCchhhccC
Confidence 1 2233332211111 021 1222232 35778999999999988754210
Q ss_pred ---------------CEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 013008 417 ---------------NVVRLVPPLIISEQELDQAVEILCKTLP 444 (451)
Q Consensus 417 ---------------~~iri~~~~~~t~e~i~~~l~~l~~~l~ 444 (451)
+.+|+.+...+|++|+++++++|+++++
T Consensus 392 ~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 392 YRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp CEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 1389988899999999999999988764
No 203
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.82 E-value=7.8e-19 Score=175.78 Aligned_cols=308 Identities=11% Similarity=0.038 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHhhcc-cccCCCCCHHHHHHHHHHhhcc-C----CC--eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008 117 ADWIKAVVDQANVLT-HVSNMYYSIPQIELAKRLVACS-F----AD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKE 188 (451)
Q Consensus 117 p~v~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~----~e--~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~ 188 (451)
|.|++|..+.++... +.+ .+.....+|.+.+++++ + .+ ...-|.+|+.|+..++..+..... +
T Consensus 65 ~~Vk~A~~~~~~~~~~~~Y--~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~-------~ 135 (420)
T 4h51_A 65 RVVRKAEQLLLDMNLDYEY--LPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFD-------A 135 (420)
T ss_dssp HHHHHHHHHHHHTTCCCCC--CCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSC-------T
T ss_pred HHHHHHHHHHhcCCCCCCC--CCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcC-------C
Confidence 788888877665432 211 22222334444444432 2 22 345588999999988886653221 2
Q ss_pred CCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcC--CCCeEEEEEccccCCCCccccCH
Q 013008 189 PATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQ--PGKTAAVFVEPIQGEGGIYSATK 266 (451)
Q Consensus 189 ~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~aavi~ep~~~~~G~~~~~~ 266 (451)
++|.|++.+|+|..+.......++.......+. .++... .|.+.+.+.++ ..+..+++..+.++++| ..++.
T Consensus 136 pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~--~~~~~~---~d~~~~~~~l~~~~~~~~vll~~~p~NPtG-~~~~~ 209 (420)
T 4h51_A 136 ETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYY--DPKTVS---LNFEGMKKDILAAPDGSVFILHQCAHNPTG-VDPSQ 209 (420)
T ss_dssp TTSCEEEEESCCTHHHHHHHHTTCCCEEEEECE--EGGGTE---ECHHHHHHHHHHSCSSCEEEEESSSCTTTC-CCCCH
T ss_pred CCCEEEEecCCchhHHHHHHHcCCeEEEeeccc--cccccC---CCHHHHHHHHhccCCCcEEEEeCCCCCCCC-CCCCH
Confidence 689999999999877654433333221110000 011111 15666666654 33455555555555555 46899
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCcccc---ccccc---ccC-CCcceeeecccccC-CcccccccccHHHHhhc--
Q 013008 267 EFLQFLRDACDDAGALLVFDEVQCGLGRTGY---LWAHE---HYG-IFPDIMTLAKPLAG-GLPIGAALVTEKVASAI-- 336 (451)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~---~~~~~---~~~-~~pdi~t~sK~lg~-G~~iG~v~~~~~i~~~~-- 336 (451)
+.+++|.++|+++++++|+||+|.+|...+. .+... ..+ ...-+.+|||.++. |+|+||+++..+..+..
T Consensus 210 ~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~ 289 (420)
T 4h51_A 210 EQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRAD 289 (420)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHH
Confidence 9999999999999999999999999965432 11111 111 12223489999985 99999998753322211
Q ss_pred -cC---CCccCCC-CCcHHHHHHHHHHHHHhc-ChHHHH-------H-----------HHhC-CCC-cc-eecccceeEE
Q 013008 337 -NY---GDHGSTF-AGSPLVCNAAIAVLDKIS-NPAFLA-------S-----------KLAR-NPH-VK-DVRGLGLIIG 389 (451)
Q Consensus 337 -~~---~~~~~t~-~~~~~~~aaa~aal~~~~-~~~~~~-------~-----------~~~~-~~~-~~-~v~g~G~~~~ 389 (451)
.. .....++ +.+..++.++...+..-. ...|.+ + +.+. .+. .. ..+..|+|.+
T Consensus 290 ~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~ 369 (420)
T 4h51_A 290 VKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSF 369 (420)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEE
T ss_pred HHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEe
Confidence 10 0112233 344555555554443100 011111 1 1111 111 11 1345687776
Q ss_pred EEecCChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 390 IEFDVSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 390 ~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
+.+ ..+.++.|.++||++.++| ||+++ ..+++.|++++++|.++++++.+
T Consensus 370 ~gl---s~e~v~~L~e~~Vy~~~~g-----Ris~A-gl~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 370 LGL---SKAQCEYCQNHNIFITVSG-----RANMA-GLTHETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp CCC---CHHHHHHHHHTTEECCTTC-----EEEGG-GCCHHHHHHHHHHHHHHHC----
T ss_pred cCc---CHHHHHHHHhCCEEEcCCC-----EEEec-cCCHHHHHHHHHHHHHHHHHhhc
Confidence 544 2345678889999988753 78654 46899999999999999987754
No 204
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.81 E-value=7.9e-19 Score=176.64 Aligned_cols=166 Identities=19% Similarity=0.142 Sum_probs=121.5
Q ss_pred ccCCCCCHHHHHHHHHHhhccCCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccC
Q 013008 133 VSNMYYSIPQIELAKRLVACSFADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTS 212 (451)
Q Consensus 133 ~~~~~~~~~~~~l~~~l~~~~~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~ 212 (451)
.+..+.++...+|+++++++++.+.+++++||++|+..+++.+. .++|.||+.++.|++.........
T Consensus 75 ~y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al~-----------~~Gd~Vi~~~~~y~~~~~~~~~~~- 142 (430)
T 3ri6_A 75 VYSRSSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLA-----------RAGDSVVTTDRLFGHTLSLFQKTL- 142 (430)
T ss_dssp -----CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHHTHH-
T ss_pred cccCCCCHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh-----------CCCCEEEEcCCCchhHHHHHHHHH-
Confidence 34556677899999999999998888899999999999998664 268999999999987654221000
Q ss_pred CCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008 213 KEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (451)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~ 292 (451)
......+.+++.+|+++|++++++ ++++|++|+++++.|.+.+ +++|+++|++||+++|+||+|+..
T Consensus 143 --------~~~G~~~~~v~~~d~~~l~~ai~~-~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~~~ 209 (430)
T 3ri6_A 143 --------PSFGIEVRFVDVMDSLAVEHACDE-TTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMTPP 209 (430)
T ss_dssp --------HHTTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTSCT
T ss_pred --------HHcCCEEEEeCCCCHHHHHHhhCC-CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 011234567788899999999975 6889999998888888776 999999999999999999999622
Q ss_pred CcccccccccccCCCcceeeecccccC-Cccc-cccc
Q 013008 293 GRTGYLWAHEHYGIFPDIMTLAKPLAG-GLPI-GAAL 327 (451)
Q Consensus 293 gr~G~~~~~~~~~~~pdi~t~sK~lg~-G~~i-G~v~ 327 (451)
.. .....+|....+.+++|.++| |..+ |+++
T Consensus 210 -~~---~~~~~~g~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 210 -YL---LEAKRLGVDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp -TT---CCGGGGTCSEEEEECCCEEETTEEECCEEEE
T ss_pred -cc---CChHHcCCEEEEECCcccccCCCCceEEEEE
Confidence 11 222344554445578899986 4444 4444
No 205
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.80 E-value=1.1e-17 Score=168.46 Aligned_cols=205 Identities=17% Similarity=0.088 Sum_probs=142.1
Q ss_pred CCHHHHHHHHHHHhh---cccc-cCCCCCHHHHHHHHHHhhccCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 013008 115 GDADWIKAVVDQANV---LTHV-SNMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK 187 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~---~~~~-~~~~~~~~~~~l~~~l~~~~~~e~v~~---~~sG~eA~~~al~~a~~~~~~~~~~~~ 187 (451)
++++|.+|+.++... +... ...+....+.+++++++++++.+...+ ++||++|+..+++.+.
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~----------- 104 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGIL----------- 104 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhC-----------
Confidence 567888888775321 1111 122345668899999999999776554 6799999999998554
Q ss_pred CCCceEEEEc-CCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEccccCCCCc
Q 013008 188 EPATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEPIQGEGGI 261 (451)
Q Consensus 188 ~~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep~~~~~G~ 261 (451)
.++|+||+.+ +.| +.+...+.+++. +...+......+..++. .|+++|++++++ ++++|++++..++.+.
T Consensus 105 ~~Gd~Vl~~~~~~y-~~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~-~tk~V~i~~sp~np~~ 180 (431)
T 3ht4_A 105 RPGDELLYITGKPY-DTLEEIVGVRGK--GVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS-NTKMIGIQRSKGYATR 180 (431)
T ss_dssp CTTCEEEECSSSCC-TTHHHHTTSSSC--SSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT-TEEEEEEECSCTTSSS
T ss_pred CCCCEEEEeCCCCc-hhHHHHHhhccc--ccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC-CCeEEEEECCCCCCCC
Confidence 2688999998 555 445554444432 11222333344556665 389999999975 6889999964333333
Q ss_pred cccCHHHHHHHHHHHHH--hCCEEEEeccccCCCcccccccccccCCCcceeeecccccCC--cccccccccHHHHhhcc
Q 013008 262 YSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAGG--LPIGAALVTEKVASAIN 337 (451)
Q Consensus 262 ~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~G--~~iG~v~~~~~i~~~~~ 337 (451)
...+.+.+++|+++|++ ||+++|+||+|..+....... .++....+.+++|.++|| .+.|++++++++++.+.
T Consensus 181 ~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~ 257 (431)
T 3ht4_A 181 PSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACA 257 (431)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHH
Confidence 46688889999999999 999999999998775433322 234444445789999874 67799999999888774
No 206
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.80 E-value=1.5e-17 Score=171.11 Aligned_cols=289 Identities=15% Similarity=0.026 Sum_probs=173.1
Q ss_pred HHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHHHHHHhh----hcCCCCCCCCc-eEEEEcCCccCChhhhhhccC
Q 013008 142 QIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQR----HSNPDSKEPAT-EFVSFTNSFHGRTMGALALTS 212 (451)
Q Consensus 142 ~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~a~~~~~----~~~~~~~~~~~-~ii~~~~~yhg~~~~~~~~~~ 212 (451)
..++.++++++++. +.++|++||++|+..++++++.++. ..+.. ..++ .|++.++. |.....+....+
T Consensus 134 e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~--~~~~~~v~~s~~~-h~s~~~~~~~~g 210 (504)
T 2okj_A 134 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMA--AVPKLVLFTSEQS-HYSIKKAGAALG 210 (504)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGG--GSCCEEEEEETTS-CTHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCcc--ccCCeEEEECCcc-hHHHHHHHHHcC
Confidence 45566777888773 4799999999999999999875321 00000 0013 45555544 444433333222
Q ss_pred CCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCC-----CeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCE
Q 013008 213 KEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGAL 282 (451)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~-----~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l 282 (451)
... ..++.+|.+ |+++|+++|++. ++++|++...+++.|.+.+ +++|.++|++||++
T Consensus 211 ~g~---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~g~~ 277 (504)
T 2okj_A 211 FGT---------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLW 277 (504)
T ss_dssp SCG---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHHHTCE
T ss_pred CCc---------ccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCE
Confidence 100 023334433 899999998631 4778888777677787766 99999999999999
Q ss_pred EEEeccccCCCcccccccccccCC-Ccceeeec--ccccCCcccccccccH-HHHhhc----cCCCc-cCC---------
Q 013008 283 LVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVTE-KVASAI----NYGDH-GST--------- 344 (451)
Q Consensus 283 lI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~~-~i~~~~----~~~~~-~~t--------- 344 (451)
+++|++|.++......+.....++ .+|+++++ |.+++++++|++++++ ++++.. ..... ...
T Consensus 278 lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 357 (504)
T 2okj_A 278 LHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTG 357 (504)
T ss_dssp EEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCG
T ss_pred EEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcc
Confidence 999999987643322222222344 57888775 9888768899999875 465431 11110 000
Q ss_pred -------CCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceec---ccceeEEEEe-cC---------
Q 013008 345 -------FAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVR---GLGLIIGIEF-DV--------- 394 (451)
Q Consensus 345 -------~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~---g~G~~~~~~~-~~--------- 394 (451)
...+++.+.++++++..-.-.+..++ .++..|.+..+. +.+.++.|.. ..
T Consensus 358 ~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~ 437 (504)
T 2okj_A 358 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP 437 (504)
T ss_dssp GGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCH
T ss_pred cCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccch
Confidence 01235666666655542100111111 334455443332 3444445543 21
Q ss_pred --------ChHHHHHHHHHCCceeee-c--CC-CCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHH
Q 013008 395 --------SATPVVDACRDSGLLVLT-A--GK-GNVVRLVPP-LIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 395 --------~~~~~~~~l~~~Gv~~~~-~--~~-~~~iri~~~-~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
...++.+.|.++|+++.. . .. .+++|+++. ..+|++||++++++|+++++++
T Consensus 438 ~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 438 QRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred hhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 034688889999964332 2 11 147999884 7889999999999999887654
No 207
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.79 E-value=2e-19 Score=182.35 Aligned_cols=275 Identities=13% Similarity=0.053 Sum_probs=173.7
Q ss_pred CCHHHHHHHHHHhhccCC-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCc
Q 013008 138 YSIPQIELAKRLVACSFA-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHY 216 (451)
Q Consensus 138 ~~~~~~~l~~~l~~~~~~-e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~ 216 (451)
+.....++.+++++ ++. +.+++++|+++|+..+++++. .++++|++.+++|++........+....+
T Consensus 55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~-----------~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~ 122 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFS-----------QKKGDILMARNVHKSVLHALDISQQEGHF 122 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTT-----------TSSSCEEECTTCCHHHHHHHHHHTCCEEE
T ss_pred cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhc-----------CCCCEEEEecCccHHHHHHHHHcCCeEEE
Confidence 34457788899999 874 568899999999999999764 16889999999988766443332222211
Q ss_pred CCCCcCC--CCC--e-eEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccC
Q 013008 217 RSPFEPV--MPG--V-NFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCG 291 (451)
Q Consensus 217 ~~~~~~~--~~~--~-~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg 291 (451)
. +. ..+ . ..+ |+++| +. .++++|++++ .++.|.+.+ +++|+++|++||++||+||+|++
T Consensus 123 v----~~~~~~~~~~~~~~---d~~~l---~~-~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~ 186 (446)
T 2x3l_A 123 I----ETHQSPLTNHYNKV---NLSRL---NN-DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGA 186 (446)
T ss_dssp C----EEEECTTTSSEEEE---EC-----------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCT
T ss_pred E----eCeeccccCcCCCC---CHHHH---cC-CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhh
Confidence 1 11 111 0 111 44555 33 3566777777 444777666 99999999999999999999986
Q ss_pred -CCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHh--hccCC-CccCCCCCcHHHHHHHHHHHHHhcC-
Q 013008 292 -LGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVAS--AINYG-DHGSTFAGSPLVCNAAIAVLDKISN- 364 (451)
Q Consensus 292 -~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~--~~~~~-~~~~t~~~~~~~~aaa~aal~~~~~- 364 (451)
+...+........ .+|+++.| |.++++.++|++++++++++ .+... ....+.+.+...+++..++++.++.
T Consensus 187 ~~~f~~~~~~~~~~--g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~ 264 (446)
T 2x3l_A 187 HFGLQGFPDSTLNY--QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTY 264 (446)
T ss_dssp TTTSTTSCCCGGGG--TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHC
T ss_pred hhccCCCCCChHHc--CCCEEEECCccccccccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 3222321222222 36777655 98877677899998877654 22211 1122334566666665556665532
Q ss_pred --hHHHHH-------HHhCCCCcceecc-cceeEEEEec-CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHH
Q 013008 365 --PAFLAS-------KLARNPHVKDVRG-LGLIIGIEFD-VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELD 433 (451)
Q Consensus 365 --~~~~~~-------~~~~~~~~~~v~g-~G~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~ 433 (451)
+++.++ +.+. .+..+.. .+..+++.+. ....++.+.|.++||.+...+. +.+|++++..+|++++
T Consensus 265 g~~~~~~~~~~l~~~l~~~--g~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g~-~~iRi~~~~~~t~e~i- 340 (446)
T 2x3l_A 265 DSTLFFAKRAQLIECLENK--GFEMLQVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELADD-YQALAILPLWHHDDTY- 340 (446)
T ss_dssp CCHHHHHHHHHHHHHHHHH--TCEEEECSSTTEEEEECTTSCHHHHHHHHHHTTEEESEECS-SCEEEECCCCCTTCCC-
T ss_pred CHHHHHHHHHHHHHHHHHc--CCEECcCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEecCC-CEEEEEeecCCCHHHH-
Confidence 224443 2222 2221211 2345666663 4577899999999999873444 6799999998899999
Q ss_pred HHHHHHHHHHHHH
Q 013008 434 QAVEILCKTLPVL 446 (451)
Q Consensus 434 ~~l~~l~~~l~~~ 446 (451)
+++++|+++++++
T Consensus 341 ~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 341 LFDSLLRKIEDMI 353 (446)
T ss_dssp CHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
No 208
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.79 E-value=1.4e-17 Score=168.97 Aligned_cols=315 Identities=12% Similarity=-0.040 Sum_probs=186.9
Q ss_pred CCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHhhccCCC-------eEEecCCHHHHHHHHHHHHHHHhhh----
Q 013008 115 GDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFAD-------RVFFSNTGTEANEAAIKFARKFQRH---- 181 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~e-------~v~~~~sG~eA~~~al~~a~~~~~~---- 181 (451)
.+|.+.+++.+++......+..++ .....++.++++++++.+ .+++++||++|+..++.+++.....
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 568899998887765322211121 122567777788888732 3899999999999999987642210
Q ss_pred cCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCC-CeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCC
Q 013008 182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMP-GVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGG 260 (451)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G 260 (451)
.+.. ..++.||+.+ .|.....+....|..... .+..+ +.. -|+++|+++|++ ++++|++...+++.|
T Consensus 134 ~G~~--~~~~~vi~~~--~h~~~~~~~~~~G~~v~~---v~~~~~~~~----~d~~~l~~~i~~-~t~~v~~~~~~n~tG 201 (452)
T 2dgk_A 134 AGKP--TDKPNLVCGP--VQICWHKFARYWDVELRE---IPMRPGQLF----MDPKRMIEACDE-NTIGVVPTFGVTYTG 201 (452)
T ss_dssp TTCC--CSCCEEEESS--CCHHHHHHHHHTTCEEEE---CCCBTTBCS----CCHHHHHHHCCT-TEEEEECBBSCTTTC
T ss_pred cCCC--CCCcEEEECC--CcHHHHHHHHHcCceEEE---EecCCCCCe----ECHHHHHHHHhh-CCEEEEEEcCCcCCc
Confidence 0000 0135677766 665554444433322111 11111 111 289999999975 466666665555677
Q ss_pred ccccCHHHHHHHHHHHHHh------CCEEEEeccccCCCc--ccccccccccCC-Ccceeeec--ccccCCccccccccc
Q 013008 261 IYSATKEFLQFLRDACDDA------GALLVFDEVQCGLGR--TGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALVT 329 (451)
Q Consensus 261 ~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tg~gr--~G~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~~ 329 (451)
.+.+ +++|.++|++| |+++++|++|.++.. ........ +.+ ..|+++++ |.+.+|+++|+++++
T Consensus 202 ~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~hK~~~~~~~~G~~~~~ 276 (452)
T 2dgk_A 202 NYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD-FRLPRVKSISASGHKFGLAPLGCGWVIWR 276 (452)
T ss_dssp BBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS-TTSTTEEEEEEETTTTTCCCSSCEEEEES
T ss_pred ccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhh-cCCCCCcEEEECcccccCCCCCeEEEEEc
Confidence 7766 99999999996 999999999986532 01110111 111 35666554 866567899999986
Q ss_pred H-HHH-hhcc--CCCcc---------CCCCC-cHHHHHHHHHHHHHhcChHH---HHH----------HHhCCCCcceec
Q 013008 330 E-KVA-SAIN--YGDHG---------STFAG-SPLVCNAAIAVLDKISNPAF---LAS----------KLARNPHVKDVR 382 (451)
Q Consensus 330 ~-~i~-~~~~--~~~~~---------~t~~~-~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~~~~v~ 382 (451)
+ +++ +.+. +.... ++-.+ +.+++.+++..+. .+.+ .++ .++.++.+..+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg---~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 353 (452)
T 2dgk_A 277 DEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG---REGYTKVQNASYQVAAYLADEIAKLGPYEFIC 353 (452)
T ss_dssp SGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred CHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEec
Confidence 4 333 4331 11111 11111 2334444444332 1211 111 334555443332
Q ss_pred -----ccceeEEEEecC------ChHHHHHHHHHCCceeee----cCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 383 -----GLGLIIGIEFDV------SATPVVDACRDSGLLVLT----AGK--GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 383 -----g~G~~~~~~~~~------~~~~~~~~l~~~Gv~~~~----~~~--~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
....++.|.+.. +..++.+.|.++|+.+.. ... ...+|+++...+|+|+++++++.|++++++
T Consensus 354 ~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~ 433 (452)
T 2dgk_A 354 TGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKY 433 (452)
T ss_dssp ECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 244566666642 237899999999996542 211 247999998888999999999999999988
Q ss_pred Hhhc
Q 013008 446 LDSN 449 (451)
Q Consensus 446 ~~~~ 449 (451)
++..
T Consensus 434 ~~~~ 437 (452)
T 2dgk_A 434 LSDH 437 (452)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 7654
No 209
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.78 E-value=1.8e-18 Score=169.79 Aligned_cols=297 Identities=10% Similarity=0.000 Sum_probs=180.9
Q ss_pred CCCHHHHHHHHHHHhhcc---cc-cCC---CC--CHHHHHHHHHHhhccCC---CeEEecCCH-HHHHHHHHHHHHHHhh
Q 013008 114 HGDADWIKAVVDQANVLT---HV-SNM---YY--SIPQIELAKRLVACSFA---DRVFFSNTG-TEANEAAIKFARKFQR 180 (451)
Q Consensus 114 ~~~p~v~~a~~~~~~~~~---~~-~~~---~~--~~~~~~l~~~l~~~~~~---e~v~~~~sG-~eA~~~al~~a~~~~~ 180 (451)
..+|.|++++.+.+++.. .. +.. +. .....+++++++++++. +++++++|+ ++|+..++..+....
T Consensus 13 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~- 91 (360)
T 1w23_A 13 ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKG- 91 (360)
T ss_dssp CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTT-
T ss_pred CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCC-
Confidence 367999999999876431 00 000 11 11367889999998873 489999988 999999988654210
Q ss_pred hcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHH-hcCCCCeEEEEEccccCCC
Q 013008 181 HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRK-LIQPGKTAAVFVEPIQGEG 259 (451)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~~~aavi~ep~~~~~ 259 (451)
++++.|+...++|+. ... ....| ... +.+..+.. .+.|+++|++ ++. .++++|+++.+++++
T Consensus 92 -------~~g~~vi~~~~~~~~-~~~-~~~~g-~~~---~v~~~~~~---~~~d~~~l~~~~i~-~~~k~v~~~~~~npt 154 (360)
T 1w23_A 92 -------TIGNYVLTGSWSEKA-LKE-AKLLG-ETH---IAASTKAN---SYQSIPDFSEFQLN-ENDAYLHITSNNTIY 154 (360)
T ss_dssp -------CEEEEEECSHHHHHH-HHH-HHTTS-EEE---EEEECGGG---TSCSCCCGGGCCCC-TTEEEEEEESEETTT
T ss_pred -------CcccEEEecchhHHH-HHH-HHHhC-CeE---Eeeccccc---CcCCccchHhhccC-CCCCEEEEeCCCCCc
Confidence 024445544443322 111 11112 110 01111000 0136677888 775 367888888777777
Q ss_pred CccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccCCcccccccccHHHHhhcc
Q 013008 260 GIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGGLPIGAALVTEKVASAIN 337 (451)
Q Consensus 260 G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~~~~i~~~~~ 337 (451)
|.+.+ +|+++||+++|+||+|+.+... .....+ |++ +++|.++.. ++|++++++++++.+.
T Consensus 155 G~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~~----di~~~s~sK~~~~~-G~G~~~~~~~~~~~~~ 217 (360)
T 1w23_A 155 GTQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQF----GMIYAGAQKNLGPS-GVTVVIVKKDLLNTKV 217 (360)
T ss_dssp TEECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGGC----SEEEEETTTTTSCT-TCEEEEEEHHHHCSCC
T ss_pred ceecc---------cccccCCceEEEechhhcCCCC---cCcccC----CEEEEEcccccCCC-CcEEEEEcHHHHhhcc
Confidence 87543 2344899999999999754322 111121 555 566999742 4899999999888775
Q ss_pred CCC-----------ccCCC-CCcHHHHHHHHHHHHHhcCh----HHHHH----------HHhCCCCc-cee--cc-c-ce
Q 013008 338 YGD-----------HGSTF-AGSPLVCNAAIAVLDKISNP----AFLAS----------KLARNPHV-KDV--RG-L-GL 386 (451)
Q Consensus 338 ~~~-----------~~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~----------~~~~~~~~-~~v--~g-~-G~ 386 (451)
+.. ...++ +.+..+++++.++++.+.+. ...++ .+++++.+ ... .. . +.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~ 297 (360)
T 1w23_A 218 EQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLM 297 (360)
T ss_dssp TTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSS
T ss_pred cCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCc
Confidence 421 11222 34566667777777765322 11111 33445522 211 21 2 45
Q ss_pred eEEEEecC--ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 387 IIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 387 ~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
++++.+.. ...++.+.|.++||.+.++.. .+.+|++++...+++++++++++|++++++
T Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 298 NVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 78887742 346788889999999977642 367999999888999999999999988764
No 210
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.78 E-value=5.5e-17 Score=166.76 Aligned_cols=320 Identities=13% Similarity=0.008 Sum_probs=187.1
Q ss_pred CCCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHhhccCCC-------eEEecCCHHHHHHHHHHHHHHHhhh-c-
Q 013008 114 HGDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFAD-------RVFFSNTGTEANEAAIKFARKFQRH-S- 182 (451)
Q Consensus 114 ~~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~e-------~v~~~~sG~eA~~~al~~a~~~~~~-~- 182 (451)
..+|.+.+++.+.+......+..++ .....++.++++++++.+ ...+++||++|+..++.+++..... +
T Consensus 67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~ 146 (502)
T 3hbx_A 67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRK 146 (502)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHH
Confidence 3689999999887765322211111 122456777788888744 3457999999999999877643210 0
Q ss_pred --CCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCC-eeEeeCCCHHHHHHhcCCCCeEEEEEccccCCC
Q 013008 183 --NPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPG-VNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEG 259 (451)
Q Consensus 183 --~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~ 259 (451)
+.. ..++.||+.+++|..+ ..+....|..... .+..++ .. -|+++|++++++ ++.+|++...+++.
T Consensus 147 ~~G~~--~~~~~vi~~~~~h~s~-~~~~~~~G~~~~~---v~~~~~~~~----~d~~~l~~~i~~-~t~~v~~~~~~n~t 215 (502)
T 3hbx_A 147 AEGKP--VDKPNIVTGANVQVCW-EKFARYFEVELKE---VKLSEGYYV----MDPQQAVDMVDE-NTICVAAILGSTLN 215 (502)
T ss_dssp HTTCC--CSCCEEEEETTCCHHH-HHHHHHTTCEEEE---ECCBTTBCS----CCHHHHHHHCCT-TEEEEEEEBSCTTT
T ss_pred hcCCC--CCCcEEEEcCCchHHH-HHHHHHcCceeEE---EecCCCcCc----CCHHHHHHHHhh-CCEEEEEecCCCCC
Confidence 100 0123777777765443 3333332221100 111111 00 189999999976 45666655555555
Q ss_pred CccccCHHHHHHHHHHHHHh------CCEEEEeccccCCCc---ccc-cccccccCCCcceeee--cccccCCccccccc
Q 013008 260 GIYSATKEFLQFLRDACDDA------GALLVFDEVQCGLGR---TGY-LWAHEHYGIFPDIMTL--AKPLAGGLPIGAAL 327 (451)
Q Consensus 260 G~~~~~~~~l~~l~~l~~~~------g~llI~DEv~tg~gr---~G~-~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~ 327 (451)
|.+.+ +++|.++|++| |++|++|++|.++.. .+. .+.+.. ...|++++ .|.+.++..+|+++
T Consensus 216 G~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~--~~~D~v~~s~hK~l~~p~g~G~~~ 289 (502)
T 3hbx_A 216 GEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRL--PLVKSINVSGHKYGLVYAGIGWVI 289 (502)
T ss_dssp CCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEEEEETTTTTCCCSSCEEEE
T ss_pred CcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCC--CCceEEEECcccccCCCCCeEEEE
Confidence 77766 99999999999 999999999976531 111 111111 13566544 47776667888877
Q ss_pred cc-HHHH-hhcc--CCCcc-----CC--CCCcHHHHHHHHHHHHHhcChHHHH---H----------HHhCCCCcceecc
Q 013008 328 VT-EKVA-SAIN--YGDHG-----ST--FAGSPLVCNAAIAVLDKISNPAFLA---S----------KLARNPHVKDVRG 383 (451)
Q Consensus 328 ~~-~~i~-~~~~--~~~~~-----~t--~~~~~~~~aaa~aal~~~~~~~~~~---~----------~~~~~~~~~~v~g 383 (451)
.+ ++++ +.+. ..... .+ ++.+.....+..++++.+..+++.+ + .++.++.+..+..
T Consensus 290 ~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~ 369 (502)
T 3hbx_A 290 WRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSK 369 (502)
T ss_dssp ESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSC
T ss_pred EeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 64 4433 2221 11111 11 2222223333334444332222211 1 3445554443332
Q ss_pred --cceeEEEEec----CChHHHHHHHHHCCceeeecCC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 013008 384 --LGLIIGIEFD----VSATPVVDACRDSGLLVLTAGK------GNVVRLVPPLIISEQELDQAVEILCKTLPVLDSNS 450 (451)
Q Consensus 384 --~G~~~~~~~~----~~~~~~~~~l~~~Gv~~~~~~~------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~~~ 450 (451)
...++.|.+. ....++.+.|.++|+++..... ...+|+++...+|+|+++.+++.|+++++++++.|
T Consensus 370 ~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~~~ 448 (502)
T 3hbx_A 370 DEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELP 448 (502)
T ss_dssp SSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 4556677763 2345899999999998653211 25799999999999999999999999999887654
No 211
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.78 E-value=3.8e-17 Score=168.66 Aligned_cols=289 Identities=16% Similarity=0.091 Sum_probs=173.7
Q ss_pred HHHHHHHHhhccCC--CeEEecCCHHHHHHHHHHHHHHHhh----hcCCCCCCCCceEEEEcCCccCChhhhhhccCCCC
Q 013008 142 QIELAKRLVACSFA--DRVFFSNTGTEANEAAIKFARKFQR----HSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEH 215 (451)
Q Consensus 142 ~~~l~~~l~~~~~~--e~v~~~~sG~eA~~~al~~a~~~~~----~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~ 215 (451)
..++.++++++++. +.++|++||++|+..|+++++.+.. ..+... .++..|++.+.. |.+...+....+...
T Consensus 150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~-~~~~~vl~s~~~-h~s~~~~~~~~g~g~ 227 (515)
T 2jis_A 150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRT-LPPLALFTSKEC-HYSIQKGAAFLGLGT 227 (515)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGG-SCCEEEEEETTS-CTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccc-cCCeEEEECCCc-cHHHHHHHHHcCCCC
Confidence 56677788888874 5899999999999999999875421 000000 001255555544 555544444332210
Q ss_pred cCCCCcCCCCCeeEeeCC-----CHHHHHHhcCC-----CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEE
Q 013008 216 YRSPFEPVMPGVNFVEYG-----NIEATRKLIQP-----GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (451)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~-----~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (451)
..+..+|.+ |+++|+++|++ .++++|+++..+++.|.+.+ +++|.++|++||+++|+
T Consensus 228 ---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~g~~l~v 294 (515)
T 2jis_A 228 ---------DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRHGLWLHV 294 (515)
T ss_dssp ---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEE
T ss_pred ---------CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHcCCeEEE
Confidence 123334432 79999999863 14788888877777887766 99999999999999999
Q ss_pred eccccCCCcccccccccccCC-Ccceeee--cccccCCcccccccccHH--HHhhc----cCCC-c----------cCCC
Q 013008 286 DEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALVTEK--VASAI----NYGD-H----------GSTF 345 (451)
Q Consensus 286 DEv~tg~gr~G~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~~~~--i~~~~----~~~~-~----------~~t~ 345 (451)
|++|+++......+.....++ .+|++++ +|.+++++++|+++++++ +++.. .+.. . .+++
T Consensus 295 D~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 374 (515)
T 2jis_A 295 DAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDK 374 (515)
T ss_dssp EETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGG
T ss_pred ehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCC
Confidence 999987654443333233355 6898877 799887678999988765 65531 1110 0 0001
Q ss_pred ------CCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceec-ccceeEEEEe-cC------Ch-----
Q 013008 346 ------AGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVR-GLGLIIGIEF-DV------SA----- 396 (451)
Q Consensus 346 ------~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~-g~G~~~~~~~-~~------~~----- 396 (451)
....+.+.++++++....-++..++ .++..|.+..+. .....+.|.+ .. ..
T Consensus 375 ~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~ 454 (515)
T 2jis_A 375 VVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHE 454 (515)
T ss_dssp CSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHH
T ss_pred CCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHH
Confidence 1123444444444431100111111 334455443222 2223344433 11 10
Q ss_pred ------HHHHHHHHHCCceeee----cCCCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHH
Q 013008 397 ------TPVVDACRDSGLLVLT----AGKGNVVRLVP-PLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 397 ------~~~~~~l~~~Gv~~~~----~~~~~~iri~~-~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
..+.+.|.+.|+.+.. .+..+.+|+++ +..+|++||++++++|++++++
T Consensus 455 ~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 455 RLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp HHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1266778888976532 12225799999 8889999999999999987754
No 212
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.77 E-value=6e-19 Score=175.80 Aligned_cols=259 Identities=13% Similarity=0.024 Sum_probs=159.0
Q ss_pred HHHHHHHhhccC-------C-CeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCc----eEEEEcCCccCChhhhhhc
Q 013008 143 IELAKRLVACSF-------A-DRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPAT----EFVSFTNSFHGRTMGALAL 210 (451)
Q Consensus 143 ~~l~~~l~~~~~-------~-e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~----~ii~~~~~yhg~~~~~~~~ 210 (451)
.+|.+.++++++ . ++|++|+|+++|+..+++++.. ++| .|++.+|+|+++.......
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~-----------~Gd~~~~~Vlv~~P~y~~~~~~~~~~ 139 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSS-----------LARSQPVSVVAAAPFYSTYVEETTYV 139 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHH-----------TSSSSSEEEEECSSCCTHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcC-----------CCCCCcceEEEcCCCchhHHHHHHHc
Confidence 455555555443 4 5899999999999999997753 577 8999999998765443222
Q ss_pred cCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHH-hC--CEEEEec
Q 013008 211 TSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDD-AG--ALLVFDE 287 (451)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~-~g--~llI~DE 287 (451)
+.. +..++. |.+.++ ..++++|++...++++|.+. + +| |++ |+ +++|+||
T Consensus 140 -g~~------------~~~~~~-d~~~l~----~~~~k~v~l~~p~NPtG~~~-~-----~l---~~~~~~~~~~ii~De 192 (391)
T 3bwn_A 140 -RSG------------MYKWEG-DAWGFD----KKGPYIELVTSPNNPDGTIR-E-----TV---VNRPDDDEAKVIHDF 192 (391)
T ss_dssp -CBT------------TEEEEE-ESTTCC----CCSCEEEEEESSCTTTCCCC-C-----CC---C-----CCCEEEEEC
T ss_pred -CCe------------EEEecC-CHHHcC----CCCCEEEEECCCCCCCchhH-H-----HH---HHHhhcCCCEEEEeC
Confidence 211 111221 222222 23455665544445556544 3 23 434 66 9999999
Q ss_pred cccCCCcccccccccccCCCcceeeeccccc-CCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc--
Q 013008 288 VQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS-- 363 (451)
Q Consensus 288 v~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-- 363 (451)
+|.. +.. .... ...+....+.+|||.++ .|+|+||+++ ++++++.+.......+++.+++++.++.++|+...
T Consensus 193 ~y~~-~~~-~~l~-~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~ 269 (391)
T 3bwn_A 193 AYYW-PHY-TPIT-RRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKET 269 (391)
T ss_dssp TTCS-TTT-SCCC-CCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CCC-Cccc-cCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchh
Confidence 9962 211 1111 12233444568999998 6999999997 88988887643333356778999999998887531
Q ss_pred ------ChHHHHH--------------HHhCCCCccee--------------cccceeEEEEecCChHHHHHHHHHCCce
Q 013008 364 ------NPAFLAS--------------KLARNPHVKDV--------------RGLGLIIGIEFDVSATPVVDACRDSGLL 409 (451)
Q Consensus 364 ------~~~~~~~--------------~~~~~~~~~~v--------------~g~G~~~~~~~~~~~~~~~~~l~~~Gv~ 409 (451)
.+.++++ .+++++.+... +..|+++|+.+.. ...+.+.|.++||.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~-~~~~~~~l~~~gV~ 348 (391)
T 3bwn_A 270 CKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE-ETDLVSELRRHKVM 348 (391)
T ss_dssp TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS-SCCHHHHHHHTTEE
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc-HHHHHHHHHHCCEE
Confidence 0112211 23344432211 2335578888742 23456667789999
Q ss_pred eeecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 410 VLTAGK----GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 410 ~~~~~~----~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
+.|+.. .+.+|+++. .+++++++++++|.+++++
T Consensus 349 v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 349 SRAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKLI 386 (391)
T ss_dssp CEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred EccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 998631 367899765 4899999999999988764
No 213
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.76 E-value=2.6e-17 Score=167.28 Aligned_cols=278 Identities=10% Similarity=0.028 Sum_probs=164.9
Q ss_pred HHHHHHHHhhccCCC-eEEecCCHH-HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008 142 QIELAKRLVACSFAD-RVFFSNTGT-EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (451)
Q Consensus 142 ~~~l~~~l~~~~~~e-~v~~~~sG~-eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (451)
..++.++++++++.+ .++|++||+ .++..++..++.+. +++.||+.++.| ......+...|......+
T Consensus 135 ~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~---------~~~~vi~~~~~h-~s~~~~~~~~G~~~~~v~ 204 (456)
T 2z67_A 135 TNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKY---------GSNVVIYPYASH-KSPIKAVSFVGMNMRLVE 204 (456)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHH---------CCCEEEEECCCC-HHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhc---------CCCEEEEECCCc-HHHHHHHHHcCCCceEEE
Confidence 566888899988843 399999999 57777777765432 255678788854 444343333332211100
Q ss_pred CcCCCCCeeEeeCCCHHHHHHhc-C---CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Q 013008 220 FEPVMPGVNFVEYGNIEATRKLI-Q---PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRT 295 (451)
Q Consensus 220 ~~~~~~~~~~~~~~d~~~le~~l-~---~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~ 295 (451)
..+...+.. .|+++|+++| + ..++.+|++...+++.|.+.+ +++|.++|++||+++|+||+|.++. .
T Consensus 205 ~~~~~~~~~----~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~-~ 275 (456)
T 2z67_A 205 TVLDGDRVY----VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQN-N 275 (456)
T ss_dssp CEEETTEEE----CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC-H
T ss_pred EeccCCCCC----cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHH-H
Confidence 000011111 2899999999 4 235666655555556777766 9999999999999999999997652 2
Q ss_pred cc-cccccccCCCcceeee--cccccCCcccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHH---H
Q 013008 296 GY-LWAHEHYGIFPDIMTL--AKPLAGGLPIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAF---L 368 (451)
Q Consensus 296 G~-~~~~~~~~~~pdi~t~--sK~lg~G~~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~---~ 368 (451)
|. ..........+|++++ +|.+++++++|++++ ++++++.+.+...+.. ++++ ..++.+++..+..+.+ .
T Consensus 276 g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~~-~~~~--~~~~~aal~~l~~~~~~~~~ 352 (456)
T 2z67_A 276 YYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRA-SATP--VVNTLVSLLSMGSKNYLELV 352 (456)
T ss_dssp HHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCB-CSHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCCC-CCCH--HHHHHHHHHHHHHHHHHHHH
Confidence 21 1111111115777755 698777788999999 5778777754333222 2232 2223333333222211 1
Q ss_pred HH----------HHhCCC---CcceecccceeEEEEe--cCChHHHHHHHHHCCc---eee------------ecCCCCE
Q 013008 369 AS----------KLARNP---HVKDVRGLGLIIGIEF--DVSATPVVDACRDSGL---LVL------------TAGKGNV 418 (451)
Q Consensus 369 ~~----------~~~~~~---~~~~v~g~G~~~~~~~--~~~~~~~~~~l~~~Gv---~~~------------~~~~~~~ 418 (451)
++ .++.++ .+..+.+. .++++.+ +....++.+.|.++|+ -+. ... .+.
T Consensus 353 ~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~-~~~ 430 (456)
T 2z67_A 353 KNQKNSKKLLDELLNDLSKKTGGKFLDVE-SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYT-HDY 430 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCBCCCC-CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCS-CCE
T ss_pred HHHHHHHHHHHHHHHhcccccCCEecCCC-CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCccccccccccC-cch
Confidence 11 122221 12112233 4555666 3324678999999885 232 111 257
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 419 VRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 419 iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
+|++++..+|+|++|+++++|++++
T Consensus 431 vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 431 IVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred hhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 9999998899999999999998764
No 214
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.75 E-value=1.5e-18 Score=174.92 Aligned_cols=312 Identities=12% Similarity=-0.002 Sum_probs=184.9
Q ss_pred CCCEEEeeccCcccccCCCCCHHHHHHHHHHHhh-cccc--cC--C-C---CCHHHHHHHHHHhhcc----CCCeEEecC
Q 013008 96 EGREYLDLSSGIAVNALGHGDADWIKAVVDQANV-LTHV--SN--M-Y---YSIPQIELAKRLVACS----FADRVFFSN 162 (451)
Q Consensus 96 ~G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~--~~--~-~---~~~~~~~l~~~l~~~~----~~e~v~~~~ 162 (451)
..+..|||..+.. .++ .++.+.+++.+.+.. ..+. +. . + ..+.+..+++.+.+.. ..++|++++
T Consensus 54 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~ 130 (427)
T 2hox_A 54 IQGCSADVASGDG--LFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGV 130 (427)
T ss_dssp CTTCCEECCSCCC--GGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred CCCceEEecCcCC--CCC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeC
Confidence 3456788877665 232 345677787776632 1111 11 1 1 1222444555444322 267999999
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhc
Q 013008 163 TGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLI 242 (451)
Q Consensus 163 sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 242 (451)
|+++|+..+++++..... ..+ .++++.|++.+|+|.++.......+.. .. ... .|+++|++++
T Consensus 131 G~~~al~~~~~~l~~~~~-~~~--~~~Gd~Vlv~~P~y~~~~~~~~~~g~~-~~------------~~~-~d~~~l~~~~ 193 (427)
T 2hox_A 131 GVTQLIHGLVISLSPNMT-ATP--DAPESKVVAHAPFYPVFREQTKYFDKK-GY------------VWA-GNAANYVNVS 193 (427)
T ss_dssp HHHHHHHHHHHHHSCCTT-TCT--TSCCEEEEECSSCCHHHHHHHHHSCBT-TE------------EEE-EEGGGGTTCS
T ss_pred CHHHHHHHHHHHHhhccc-ccc--CCCCCEEEEeCCCcccHHHHHHHcCCe-ee------------eec-CCHHHHHHhh
Confidence 999999999987610000 000 026899999999998765444332211 10 011 1678888877
Q ss_pred CCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeeccccc-CCc
Q 013008 243 QPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLA-GGL 321 (451)
Q Consensus 243 ~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg-~G~ 321 (451)
.+ ++++|++...++++|.+. + +. |+ ++..|.||.+-+ ..-...... .+...-+.+|||.++ .|+
T Consensus 194 ~~-~~k~v~l~~p~NPtG~~~-~-~~-------l~--~~~~i~d~~~~~--~~~s~~~~~-~~~~i~~~S~SK~~g~~G~ 258 (427)
T 2hox_A 194 NP-EQYIEMVTSPNNPEGLLR-H-AV-------IK--GCKSIYDMVYYW--PHYTPIKYK-ADEDILLFTMSKFTGHSGS 258 (427)
T ss_dssp CG-GGEEEEEESSCTTTCCCC-C-CS-------ST--TCEEEEECTTCS--TTTSCCCSC-BCCSEEEEEHHHHTSCGGG
T ss_pred cC-CceEEEEcCCCCCccccc-H-HH-------Hc--CCCEEEeecccC--CCCCccccC-CCceEEEEeChhcCCCCCc
Confidence 64 455555544445555544 4 42 22 566788887632 000111111 233333458899998 689
Q ss_pred ccccccc-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhc---------ChHHH--------HH------HHhCCCC
Q 013008 322 PIGAALV-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKIS---------NPAFL--------AS------KLARNPH 377 (451)
Q Consensus 322 ~iG~v~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---------~~~~~--------~~------~~~~~~~ 377 (451)
|+||+++ ++++++.+.......+++.+++++.++.++|+... .++++ ++ .+++++.
T Consensus 259 RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 338 (427)
T 2hox_A 259 RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDR 338 (427)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred eEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999 58998887654334456778898888888887421 11111 11 2334432
Q ss_pred cce---------------ecccceeEEEEecCChHHHHHHHH-HCCceeeecCC----CCEEEEeCCCCCCHHHHHHHHH
Q 013008 378 VKD---------------VRGLGLIIGIEFDVSATPVVDACR-DSGLLVLTAGK----GNVVRLVPPLIISEQELDQAVE 437 (451)
Q Consensus 378 ~~~---------------v~g~G~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~~~----~~~iri~~~~~~t~e~i~~~l~ 437 (451)
+.. ....|+++|+.+..+..++++.|+ ++||.+.|+.. .+.+|+++. .++|+++++++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~--~~~e~l~~~l~ 416 (427)
T 2hox_A 339 FSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLI--KTQDDFDQLMY 416 (427)
T ss_dssp EECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECS--SCHHHHHHHHH
T ss_pred ccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEec--CCHHHHHHHHH
Confidence 221 112378888888544556777776 78999998631 367999765 48999999999
Q ss_pred HHHHHHH
Q 013008 438 ILCKTLP 444 (451)
Q Consensus 438 ~l~~~l~ 444 (451)
+|.++++
T Consensus 417 ~l~~~~~ 423 (427)
T 2hox_A 417 YLKDMVK 423 (427)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998874
No 215
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.75 E-value=2.3e-17 Score=162.19 Aligned_cols=294 Identities=10% Similarity=0.024 Sum_probs=178.8
Q ss_pred CCCHHHHHHHHHHHhhccc-c------cCCCC--CHHHHHHHHHHhhccCCC---e-EEecCCHHHHHHHHHHHHHHHhh
Q 013008 114 HGDADWIKAVVDQANVLTH-V------SNMYY--SIPQIELAKRLVACSFAD---R-VFFSNTGTEANEAAIKFARKFQR 180 (451)
Q Consensus 114 ~~~p~v~~a~~~~~~~~~~-~------~~~~~--~~~~~~l~~~l~~~~~~e---~-v~~~~sG~eA~~~al~~a~~~~~ 180 (451)
..+|+|++++.+.+.+... + ...+. .+...+++++++++++.+ + +++++||++|+..+++.+.
T Consensus 14 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~---- 89 (362)
T 2c0r_A 14 ALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFL---- 89 (362)
T ss_dssp CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcC----
Confidence 3789999999988754311 0 01111 123568888899888732 5 4678999999999998654
Q ss_pred hcCCCCCCCCceEEEEcCCccCChh-hhhhccCCCCcCCCCcCCCCCeeEeeCC---CHHHHHHhcCCCCeEEEEEcccc
Q 013008 181 HSNPDSKEPATEFVSFTNSFHGRTM-GALALTSKEHYRSPFEPVMPGVNFVEYG---NIEATRKLIQPGKTAAVFVEPIQ 256 (451)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~le~~l~~~~~aavi~ep~~ 256 (451)
.++|+||+.++.+++... ......|.... .+..+.. .++ |+++++ +. .++++|++.+++
T Consensus 90 -------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~----v~~~~~~---~~~~~~~~~~~~--i~-~~t~~v~~~~~~ 152 (362)
T 2c0r_A 90 -------KEGQTANYVMTGSWASKALKEAKLIGDTHV----AASSEAS---NYMTLPKLQEIQ--LQ-DNAAYLHLTSNE 152 (362)
T ss_dssp -------CTTCEEEEEECSHHHHHHHHHHHHHSCEEE----EEECGGG---TTCSCCCGGGCC--CC-TTEEEEEEESEE
T ss_pred -------CCCCeEEEEecCcHhHHHHHHHHHhCCeEE----Eeccccc---ccccCCCHHHcc--cC-CCcCEEEEeCCc
Confidence 157889988877655421 11111121110 0100000 011 333332 43 367777777667
Q ss_pred CCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCccee--eecccccC-CcccccccccHHHH
Q 013008 257 GEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-GLPIGAALVTEKVA 333 (451)
Q Consensus 257 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G~~iG~v~~~~~i~ 333 (451)
+++|....+ +++| ||+++|+||+|. +|.. ..... .. |++ +++|.+|. | +|+++++++++
T Consensus 153 n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~--~~~~~--~~--d~~~~s~~K~~g~~G--~G~l~~~~~~~ 214 (362)
T 2c0r_A 153 TIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR--PFDLN--QF--GLVYAGAQKNLGPSG--VTVVIVREDLV 214 (362)
T ss_dssp TTTTEECSS---CCCC------TTSCEEEECTTT-TTSS--CCCGG--GC--SEEEEETTTTTCCSS--CEEEEEEGGGS
T ss_pred Cccceeccc---cccc------CCCEEEEEChhh-ccCC--ccchh--HC--cEEEEeccccccCcC--cEEEEEcHHHH
Confidence 777764222 4444 899999999996 3221 11111 12 554 67899973 4 89999999988
Q ss_pred hhccCCC------------ccCCCCCcHHHHHHHHHHHHHhcCh----HHHHH----------HHhCCCCc-cee----c
Q 013008 334 SAINYGD------------HGSTFAGSPLVCNAAIAVLDKISNP----AFLAS----------KLARNPHV-KDV----R 382 (451)
Q Consensus 334 ~~~~~~~------------~~~t~~~~~~~~aaa~aal~~~~~~----~~~~~----------~~~~~~~~-~~v----~ 382 (451)
+.+.+.. ....++.++.+++++.++|+.+.+. ...++ .++.++.+ ... .
T Consensus 215 ~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 294 (362)
T 2c0r_A 215 AESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDS 294 (362)
T ss_dssp SSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGG
T ss_pred hhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHH
Confidence 7765310 0223456778888888888865432 22222 22334311 211 1
Q ss_pred ccceeEEEEec--CChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 013008 383 GLGLIIGIEFD--VSATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 383 g~G~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
..+.++++.+. ....++++.|.++||.+.++.. .+.+|+++...+++|+++++++.|++++++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 295 RSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp BCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 12445666653 2356799999999998876532 2469999888889999999999999987653
No 216
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.75 E-value=1.5e-17 Score=170.17 Aligned_cols=304 Identities=15% Similarity=0.109 Sum_probs=178.0
Q ss_pred CCCHHHHHHHHHHHhhcc-cccC---CC-CCHH----HHHHHHHHhhccCCC-----eEEecCCHHHHHHHHHHHHHHHh
Q 013008 114 HGDADWIKAVVDQANVLT-HVSN---MY-YSIP----QIELAKRLVACSFAD-----RVFFSNTGTEANEAAIKFARKFQ 179 (451)
Q Consensus 114 ~~~p~v~~a~~~~~~~~~-~~~~---~~-~~~~----~~~l~~~l~~~~~~e-----~v~~~~sG~eA~~~al~~a~~~~ 179 (451)
..+|.|++|+.+.+.+.. .++. .+ .... ...+.++++++++.+ ..+.++||++|+..+++++.
T Consensus 55 ~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all--- 131 (483)
T 1rv3_A 55 FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV--- 131 (483)
T ss_dssp CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT---
T ss_pred CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhc---
Confidence 368999999998876521 1111 11 2222 344557888888743 22455567799999888654
Q ss_pred hhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC--------CCHHHHHHhcCCCCeEEEE
Q 013008 180 RHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY--------GNIEATRKLIQPGKTAAVF 251 (451)
Q Consensus 180 ~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~d~~~le~~l~~~~~aavi 251 (451)
.++|+||+.++.|+++......... .... + ....+..+++ -|+++|++++...++++|+
T Consensus 132 --------~pGD~Vl~~~~~~~~~~~~~~~~~~-~~v~--~--~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi 198 (483)
T 1rv3_A 132 --------EPHGRIMGLDLPDGGHLTHGFMTDK-KKIS--A--TSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLII 198 (483)
T ss_dssp --------CTTCEEEEECGGGTCCGGGCCBCSS-CBCS--H--HHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEE
T ss_pred --------CCCCEEEEecCccCcCcchhhhhcc-cCcc--c--ccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEE
Confidence 2689999999988766422110000 0000 0 0000111111 2899999999733567777
Q ss_pred EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CCCccccc-ccccccCCCcceee--ecccccCCccccccc
Q 013008 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYL-WAHEHYGIFPDIMT--LAKPLAGGLPIGAAL 327 (451)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~-~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~ 327 (451)
+ ...+++ .+.+ +++|+++|++||++||+||+|. |+-..|.. .... ..|+++ ++|+|+ |++.|+++
T Consensus 199 ~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~~K~l~-GprgG~i~ 267 (483)
T 1rv3_A 199 A-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTHKTLR-GCRAGMIF 267 (483)
T ss_dssp E-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESSGGGC-CCSCEEEE
T ss_pred E-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecCcccCC-CCCceEEE
Confidence 7 444444 4444 9999999999999999999985 33111211 1111 356664 569985 56779999
Q ss_pred ccHH---------------HHhhccCCCccCCCC-CcHHHHHHHHHHHHHhcChHH---HHH----------HHhCCCCc
Q 013008 328 VTEK---------------VASAINYGDHGSTFA-GSPLVCNAAIAVLDKISNPAF---LAS----------KLARNPHV 378 (451)
Q Consensus 328 ~~~~---------------i~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~~ 378 (451)
++++ +.+.+......+..+ .+...+++..++++.+..+.+ .++ .++.. .+
T Consensus 268 ~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 346 (483)
T 1rv3_A 268 YRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-GY 346 (483)
T ss_dssp EECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred EcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 8864 223222111111122 234445555567766544322 221 12222 22
Q ss_pred ceeccc--ceeEEEEec---CChHHHHHHHHHCCceee----ecCC----CCEEEEeCCCCCC----HHHHHHHHHHHHH
Q 013008 379 KDVRGL--GLIIGIEFD---VSATPVVDACRDSGLLVL----TAGK----GNVVRLVPPLIIS----EQELDQAVEILCK 441 (451)
Q Consensus 379 ~~v~g~--G~~~~~~~~---~~~~~~~~~l~~~Gv~~~----~~~~----~~~iri~~~~~~t----~e~i~~~l~~l~~ 441 (451)
..+.+. ..+.++++. .+..++.+.|.+.||.+. |+.. .+.+||+++..+| ++|+++++++|.+
T Consensus 347 ~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~ 426 (483)
T 1rv3_A 347 KIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHR 426 (483)
T ss_dssp EEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred EeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHH
Confidence 222221 245666763 356778888888999988 6431 2579998876555 9999999999999
Q ss_pred HHHH
Q 013008 442 TLPV 445 (451)
Q Consensus 442 ~l~~ 445 (451)
+++.
T Consensus 427 ~l~~ 430 (483)
T 1rv3_A 427 GIEL 430 (483)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 217
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.75 E-value=7.6e-17 Score=159.72 Aligned_cols=298 Identities=14% Similarity=0.081 Sum_probs=183.2
Q ss_pred CCHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH-hhccC-CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCce
Q 013008 115 GDADWIKAVVDQANVLTHVSNMYYSIPQIELAKRL-VACSF-ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATE 192 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~-~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ 192 (451)
..|++.+++.+.++..... .+.+...+|++++ +++++ .+.+++++||++|+..+++.+. . .++|+
T Consensus 14 ~~~~i~~a~~~~~~~~~~~---~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~--~--------~~Gd~ 80 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIYT---NYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKK--R--------KKGKY 80 (377)
T ss_dssp CGGGGHHHHHHHHHHTCCS---SSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHS--C--------TTCCE
T ss_pred CcHHHHHHHHHHHHcCCcc---cCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcC--C--------CCcCE
Confidence 4577899999988764221 1245578999999 99999 8899999999999999998651 1 16899
Q ss_pred EEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCC--eEEEEEccccCCCCccccCHHHHH
Q 013008 193 FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK--TAAVFVEPIQGEGGIYSATKEFLQ 270 (451)
Q Consensus 193 ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--~aavi~ep~~~~~G~~~~~~~~l~ 270 (451)
||+.+++|++........+....+ .+..++.. .-|+++|++++...+ +++|+ |++ ..|...+ ++
T Consensus 81 Vi~~~~~~~~~~~~~~~~G~~~~~----v~~~~~~~---~~d~~~l~~~i~~~~~~tk~v~--~~~-~~G~~~~----~~ 146 (377)
T 3ju7_A 81 ALMPSFTFPATPLAAIWCGLEPYF----IDISIDDW---YMDKTVLWDKIEELKEEVAIVV--PYA-TFGSWMN----LE 146 (377)
T ss_dssp EEEESSSCTHHHHHHHHTTCEEEE----ECBCTTTC---SBCHHHHHHHHHHHGGGEEEEC--CBC-GGGBCCC----CH
T ss_pred EEECCCCcHHHHHHHHHcCCEEEE----EecCCccC---CcCHHHHHHHHhcCCCCceEEE--EEC-CCCCccC----HH
Confidence 999999998765433222211111 11111100 018999999883223 67776 333 3455554 89
Q ss_pred HHHHHHHHhCCEEEEeccccCCCccccccccccc-CCCcceeeec----ccccCCcccccccc-cHHHHhhccCCC----
Q 013008 271 FLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHY-GIFPDIMTLA----KPLAGGLPIGAALV-TEKVASAINYGD---- 340 (451)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~-~~~pdi~t~s----K~lg~G~~iG~v~~-~~~i~~~~~~~~---- 340 (451)
+|.++|+ ||+++|+|++|+ +|.. +..... +...|+.++| |.+++| ..|+++. ++++.+.++...
T Consensus 147 ~i~~la~-~~~~vi~D~a~a-~g~~---~~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~~g~ 220 (377)
T 3ju7_A 147 EYEELEK-KGVPVVVDAAPG-FGLM---NGGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGNFGF 220 (377)
T ss_dssp HHHHHHH-TTCCBEEECTTC-TTCE---ETTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTBTTB
T ss_pred HHHHHHh-cCCEEEEECCCc-cCCe---ECCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHhcCC
Confidence 9999999 999999999996 4322 111122 1224565554 999875 5566665 466666553211
Q ss_pred --------ccCCCCCcHHHHHHHHHHHHHhcCh-----HHH---HHHHhCCCCc--ceecccc-----eeEEEEecC--C
Q 013008 341 --------HGSTFAGSPLVCNAAIAVLDKISNP-----AFL---ASKLARNPHV--KDVRGLG-----LIIGIEFDV--S 395 (451)
Q Consensus 341 --------~~~t~~~~~~~~aaa~aal~~~~~~-----~~~---~~~~~~~~~~--~~v~g~G-----~~~~~~~~~--~ 395 (451)
.+..+..+++.++.+++.++.+... ... .+.++.++.+ ......+ .++.+.++. .
T Consensus 221 ~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T 3ju7_A 221 DTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEVR 300 (377)
T ss_dssp CTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTSC
T ss_pred CCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChhh
Confidence 1234556788888787777644221 011 1123334421 1111111 123344332 3
Q ss_pred hHHHHHHHHHCCceeeecCC------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 396 ATPVVDACRDSGLLVLTAGK------------------------GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 396 ~~~~~~~l~~~Gv~~~~~~~------------------------~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
..++.+.|.++||.+..... ...+|+.+....|++|++++++.|.+++..
T Consensus 301 ~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 301 NKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp HHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 77899999999998754210 135888888889999999999999988764
No 218
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.74 E-value=3e-17 Score=167.14 Aligned_cols=303 Identities=15% Similarity=0.150 Sum_probs=166.1
Q ss_pred CCHHHHHHHHHHHhh-cccccC--CC--CCHHHHHHH----HHHhhccCCCe-----EEecCCHHHHHHHHHHHHHHHhh
Q 013008 115 GDADWIKAVVDQANV-LTHVSN--MY--YSIPQIELA----KRLVACSFADR-----VFFSNTGTEANEAAIKFARKFQR 180 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~~--~~--~~~~~~~l~----~~l~~~~~~e~-----v~~~~sG~eA~~~al~~a~~~~~ 180 (451)
.+|+|++|+.+.+.+ +..++. .+ ..+...+|+ ++++++++.+. .++++||++||..++..+.
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~---- 141 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL---- 141 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc----
Confidence 589999999887643 322211 11 122222344 88899998553 4566799999999998664
Q ss_pred hcCCCCCCCCceEEEEcCCccCChhh-------hhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEc
Q 013008 181 HSNPDSKEPATEFVSFTNSFHGRTMG-------ALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (451)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~e 253 (451)
.++|+||+.++.|.|+... .+.+++.......+ +..+... ..|+++|++++...++++|++.
T Consensus 142 -------~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~-~vd~~~~---~iD~d~le~~l~~~~~klIi~~ 210 (490)
T 2a7v_A 142 -------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPY-KLNPKTG---LIDYNQLALTARLFRPRLIIAG 210 (490)
T ss_dssp -------CSCEECCC-------------------------------C-CBCTTTC---SBCHHHHHHHHHHHCCSEEEEC
T ss_pred -------CCCCEecccCccccccccchhhhcchhHHHcCCeEEEEec-ccccccC---CcCHHHHHHHHhhcCCcEEEEc
Confidence 2799999999887543211 11122211000000 1111110 1389999999863334566654
Q ss_pred -cccCCCCccccCHHHHHHHHHHHHHhCCEEEEecccc-CCCccccc-ccccccCCCccee--eecccccCCcccccccc
Q 013008 254 -PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQC-GLGRTGYL-WAHEHYGIFPDIM--TLAKPLAGGLPIGAALV 328 (451)
Q Consensus 254 -p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~-~~~~~~~~~pdi~--t~sK~lg~G~~iG~v~~ 328 (451)
|.++. ..+ +++|+++|++||++||+|++|. |+...|.. ..+. ..|++ +++|+|+ |.+.|++++
T Consensus 211 ~s~~~~---~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv~~S~hK~l~-Gp~GG~i~~ 278 (490)
T 2a7v_A 211 TSAYAR---LID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLR-GARSGLIFY 278 (490)
T ss_dssp CSSCCS---CCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSGGGC-SCSCEEEEE
T ss_pred CCCCCC---ccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEEEECCcccCc-cccchheee
Confidence 44432 233 8999999999999999999974 33122221 1111 24665 5679996 456788888
Q ss_pred cHH---------------HHhhccCCCccCCCCC-cHHHHHHHHHHHHHhcChH---HHHH-------H---HhCCCCcc
Q 013008 329 TEK---------------VASAINYGDHGSTFAG-SPLVCNAAIAVLDKISNPA---FLAS-------K---LARNPHVK 379 (451)
Q Consensus 329 ~~~---------------i~~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~~~---~~~~-------~---~~~~~~~~ 379 (451)
+++ +.+.++.....++.++ ++..+++..+++.....++ +.++ + +... .+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~ 357 (490)
T 2a7v_A 279 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYS 357 (490)
T ss_dssp ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred ccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcE
Confidence 764 3333332222233333 3444444445665543322 2222 1 1222 222
Q ss_pred eecc--cceeEEEEec---CChHHHHHHHHHCCceeeec----CC----CCEEEEeCC----CCCCHHHHHHHHHHHHHH
Q 013008 380 DVRG--LGLIIGIEFD---VSATPVVDACRDSGLLVLTA----GK----GNVVRLVPP----LIISEQELDQAVEILCKT 442 (451)
Q Consensus 380 ~v~g--~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~~----~~----~~~iri~~~----~~~t~e~i~~~l~~l~~~ 442 (451)
.+.+ ...++++++. ....++.+.|.+.||.+... .. +..+|+..+ ..++++|++++++.|.++
T Consensus 358 v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~ 437 (490)
T 2a7v_A 358 LVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEG 437 (490)
T ss_dssp EGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred EecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHH
Confidence 2221 2356777773 24677888888899998742 11 356999654 357899999999999998
Q ss_pred HHH
Q 013008 443 LPV 445 (451)
Q Consensus 443 l~~ 445 (451)
+..
T Consensus 438 l~~ 440 (490)
T 2a7v_A 438 VNI 440 (490)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 219
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.73 E-value=1.9e-16 Score=162.99 Aligned_cols=315 Identities=15% Similarity=0.025 Sum_probs=176.2
Q ss_pred CCHHH-HHHHHHHHhhcccccCCCCCHH----HHHHHHHHhhccCC----CeEEecCCHHHHHHHHHHHHHHHh----hh
Q 013008 115 GDADW-IKAVVDQANVLTHVSNMYYSIP----QIELAKRLVACSFA----DRVFFSNTGTEANEAAIKFARKFQ----RH 181 (451)
Q Consensus 115 ~~p~v-~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~----e~v~~~~sG~eA~~~al~~a~~~~----~~ 181 (451)
.+|.+ .+++..++......+ ...+. +.+++++++++++. +.++|++||++|+..|+.+++... ..
T Consensus 107 ~~~~~~~e~l~~~~~~~~~~~--~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~ 184 (511)
T 3vp6_A 107 DIIGLAGEWLTSTANTNMFTY--EIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKT 184 (511)
T ss_dssp CHHHHHHHHHHHHHCCCSSCT--TTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHH
T ss_pred cHHHHHHHHHHHHhccCCCCc--ccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhh
Confidence 34444 355555555432221 22232 45566677777763 489999999999999999887531 00
Q ss_pred cCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC-----CHHHHHHhcCCC-----CeEEEE
Q 013008 182 SNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG-----NIEATRKLIQPG-----KTAAVF 251 (451)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~-----~~aavi 251 (451)
.+-. ..+++.|++.+.. |.+...+....+... ..+..++.+ |+++|+++|++. .+.+|+
T Consensus 185 ~G~~-~~~~~~v~~s~~~-H~s~~~~~~~~g~g~---------~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv 253 (511)
T 3vp6_A 185 KGMA-AVPKLVLFTSEQS-HYSIKKAGAALGFGT---------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVN 253 (511)
T ss_dssp HCGG-GSCCEEEEEETTS-CTHHHHHHHHTTSCG---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCcc-cCCCeEEEECCCc-hHHHHHHHHHcCCCC---------CcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0100 0024455555554 444444444333210 012233322 899999999632 267788
Q ss_pred EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC-Ccceeee--cccccCCcccccccc
Q 013008 252 VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALV 328 (451)
Q Consensus 252 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~ 328 (451)
++..+++.|.+.+ |++|.++|++||+++++|++|.+.......+.....|+ ..|++++ .|.+++.+..|+++.
T Consensus 254 ~~~~~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~ 329 (511)
T 3vp6_A 254 ATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILV 329 (511)
T ss_dssp EEBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEE
T ss_pred EecCCCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEE
Confidence 8777777787766 99999999999999999999975322221111112233 4577654 598876566777776
Q ss_pred cH-HHHhhc-c--CCCc---c-----------CCC----CCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCC
Q 013008 329 TE-KVASAI-N--YGDH---G-----------STF----AGSPLVCNAAIAVLDKISNPAFLAS----------KLARNP 376 (451)
Q Consensus 329 ~~-~i~~~~-~--~~~~---~-----------~t~----~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~ 376 (451)
++ +++... . +... . .++ ....+.+.+++.++..-.-++..++ .++..|
T Consensus 330 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~p 409 (511)
T 3vp6_A 330 KEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNRE 409 (511)
T ss_dssp SSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred eCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 53 444332 1 0000 0 000 1233444444443321000111111 334556
Q ss_pred Ccceec---ccceeEEEEecC------------------ChHHHHHHHHHCCceeeec---CC-CCEEEEeC-CCCCCHH
Q 013008 377 HVKDVR---GLGLIIGIEFDV------------------SATPVVDACRDSGLLVLTA---GK-GNVVRLVP-PLIISEQ 430 (451)
Q Consensus 377 ~~~~v~---g~G~~~~~~~~~------------------~~~~~~~~l~~~Gv~~~~~---~~-~~~iri~~-~~~~t~e 430 (451)
.+..+. +...++.|.+.. ...++.+.|+++|+++... +. .+++|+++ +..++++
T Consensus 410 g~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~ 489 (511)
T 3vp6_A 410 EFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQS 489 (511)
T ss_dssp TEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHH
T ss_pred CEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHH
Confidence 544333 344455554310 0235888899999755431 22 14699988 7888999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013008 431 ELDQAVEILCKTLPVL 446 (451)
Q Consensus 431 ~i~~~l~~l~~~l~~~ 446 (451)
||+.+++.|++.-+.+
T Consensus 490 di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 490 DIDFLIEEIERLGQDL 505 (511)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998876543
No 220
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.73 E-value=2.7e-17 Score=164.06 Aligned_cols=293 Identities=12% Similarity=0.006 Sum_probs=173.8
Q ss_pred CCHHHHHHHHHHHhhcccccCCCC--CHHHHHHHHHHhhccCC---CeEEe-cCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008 115 GDADWIKAVVDQANVLTHVSNMYY--SIPQIELAKRLVACSFA---DRVFF-SNTGTEANEAAIKFARKFQRHSNPDSKE 188 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~---e~v~~-~~sG~eA~~~al~~a~~~~~~~~~~~~~ 188 (451)
.+|+|++++.+...........++ .+...+++++++++++. +++++ ++||++|+..+++.+. +
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~---~-------- 119 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI---D-------- 119 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC---S--------
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc---C--------
Confidence 678898888763111100011111 12367899999999873 48898 9999999999999764 1
Q ss_pred CCceEEEEcCCccCChhhhhh-ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHH
Q 013008 189 PATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKE 267 (451)
Q Consensus 189 ~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~ 267 (451)
++ ++.....+|+....... ..+ ....+..++.++-......+. .++++|++...++++|.+.+
T Consensus 120 ~g--v~~v~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~g~~~~~~i~-~~~~~v~~~~~~nptG~~~~--- 183 (398)
T 2fyf_A 120 KR--SLHLTYGEFSAKFASAVSKNP----------FVGEPIIITSDPGSAPEPQTD-PSVDVIAWAHNETSTGVAVA--- 183 (398)
T ss_dssp SC--EEEEECSHHHHHHHHHHHHCT----------TSCCCEEEECCTTCCCCCCCC-TTCSEEEEESEETTTTEECC---
T ss_pred CC--eEEEeCCHHHHHHHHHHHHhC----------CCCceEEEecCCCCCCCcccc-CCCCEEEEeCcCCCcceecc---
Confidence 33 33336667754322111 110 001112222210000000133 35677777777777787665
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceee--ecccccCCcccccccccHHHHhhccC-------
Q 013008 268 FLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMT--LAKPLAGGLPIGAALVTEKVASAINY------- 338 (451)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t--~sK~lg~G~~iG~v~~~~~i~~~~~~------- 338 (451)
+++|.++ ||+++|+||+|+.+... .... .+|+++ ++|.++++.++|++++++++++.+..
T Consensus 184 -~~~i~~~---~~~~vivD~a~~~~~~~---~~~~----~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~ 252 (398)
T 2fyf_A 184 -VRRPEGS---DDALVVIDATSGAGGLP---VDIA----ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRW 252 (398)
T ss_dssp -CCCCTTC---C-CEEEEECTTTTTTSC---CCGG----GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCC
T ss_pred -hHHhhhh---cCCeEEEEeccccCCcc---cCcc----cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCC
Confidence 4444444 89999999999754321 1111 267665 55999864358999999988776521
Q ss_pred ---CC----------ccCC-CCCcHHHHHHHHHHHHHhcChH----HHHH----------HHhCCCCcceec--c--c-c
Q 013008 339 ---GD----------HGST-FAGSPLVCNAAIAVLDKISNPA----FLAS----------KLARNPHVKDVR--G--L-G 385 (451)
Q Consensus 339 ---~~----------~~~t-~~~~~~~~aaa~aal~~~~~~~----~~~~----------~~~~~~~~~~v~--g--~-G 385 (451)
.. ...+ .+.+..+++++.++|+.+.+.+ ..++ .+++++.+.... + . +
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 332 (398)
T 2fyf_A 253 VPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQ 332 (398)
T ss_dssp CCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCS
T ss_pred CCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCC
Confidence 00 0122 2356667777777777543221 1111 233444333221 2 2 3
Q ss_pred eeEEEEec--CChHHHHHHHHHCCceeeecCC---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 386 LIIGIEFD--VSATPVVDACRDSGLLVLTAGK---GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 386 ~~~~~~~~--~~~~~~~~~l~~~Gv~~~~~~~---~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
.++++.+. .+..++.+.|.++||.+.++.. ++.+|+++...+++||+++++++|++++++
T Consensus 333 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 333 VVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 47788873 3578899999999999976421 368999998888999999999999998764
No 221
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.71 E-value=2e-15 Score=150.70 Aligned_cols=200 Identities=14% Similarity=0.122 Sum_probs=135.1
Q ss_pred CCHHHHHHHHHHH-hh--cccc-cCCCCCHHHHHHHHHHhhccCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 013008 115 GDADWIKAVVDQA-NV--LTHV-SNMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK 187 (451)
Q Consensus 115 ~~p~v~~a~~~~~-~~--~~~~-~~~~~~~~~~~l~~~l~~~~~~e~v~~---~~sG~eA~~~al~~a~~~~~~~~~~~~ 187 (451)
++++|.+|+.+.. .. +... ...+....+.+|+++++++++.+..++ ++||++|+..+++.+.
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all----------- 98 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGIL----------- 98 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHC-----------
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhc-----------
Confidence 4577888887753 11 1111 122345558899999999999887777 8999999999998654
Q ss_pred CCCceEEEEc-CCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCCCeEEEEEcc----ccC
Q 013008 188 EPATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPGKTAAVFVEP----IQG 257 (451)
Q Consensus 188 ~~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~aavi~ep----~~~ 257 (451)
.++|.||+.+ +.|++.... ....+.. ...+......+.+++. .|++++++++++ ++++|++++ +++
T Consensus 99 ~~GD~Vl~~~~~~y~~~~~~-~~~~g~~--~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~-~tklV~i~~s~g~p~n 174 (409)
T 3jzl_A 99 RPDDELLYITGQPYDTLEEI-VGIRKQG--QGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP-KTKMIGIQRSRGYADR 174 (409)
T ss_dssp CTTCEEEECSSSCCTTHHHH-HTSSSSS--SSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT-TEEEEEEECSCTTSSS
T ss_pred CCCCEEEEeCCCCcHhHHHH-Hhcccch--hhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC-CCeEEEEECCCCCCCC
Confidence 2689999998 887665421 1111100 0000111122334443 489999999975 688999998 777
Q ss_pred CCCccccCHHHHHHHHHHHHH--hCCEEEEeccccCCCcccccccccccCCCccee--eecccccCC--cccccccccHH
Q 013008 258 EGGIYSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAGG--LPIGAALVTEK 331 (451)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~G--~~iG~v~~~~~ 331 (451)
+.|.+.+ +++|.++|++ ||+++|+||+|..+...... ...+ .|++ +++|.++++ ...|+++++++
T Consensus 175 ptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~p---~~~g--~Div~~S~sK~lgg~~~~~GG~v~~~~~ 245 (409)
T 3jzl_A 175 PSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEP---PEVG--ADIIAGSLIKNPGGGLAKTGGYIAGKEA 245 (409)
T ss_dssp CCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCCS---GGGT--CSEEEEETTSGGGTTTCSSCEEEEECHH
T ss_pred CcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCCc---cccC--CeEEEECccccCCccCCceEEEEEeCHH
Confidence 7777655 9999999999 99999999998644211111 1223 4655 788999864 34689999999
Q ss_pred HHhhccC
Q 013008 332 VASAINY 338 (451)
Q Consensus 332 i~~~~~~ 338 (451)
+++.+..
T Consensus 246 li~~l~~ 252 (409)
T 3jzl_A 246 LVDLCGY 252 (409)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 222
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.70 E-value=3.1e-15 Score=149.86 Aligned_cols=201 Identities=15% Similarity=0.134 Sum_probs=134.0
Q ss_pred CHHHHHHHHHHH--hh-ccccc-CCCCCHHHHHHHHHHhhccCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCCC
Q 013008 116 DADWIKAVVDQA--NV-LTHVS-NMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSKE 188 (451)
Q Consensus 116 ~p~v~~a~~~~~--~~-~~~~~-~~~~~~~~~~l~~~l~~~~~~e~v~~---~~sG~eA~~~al~~a~~~~~~~~~~~~~ 188 (451)
.++|.+|+.+.. +. +.... ..+......+|+++++++++.+..++ ++||++|+..++..+. .
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all-----------~ 113 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL-----------R 113 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHC-----------C
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHh-----------C
Confidence 367778777642 11 11111 12344558899999999999877777 8999999999988654 2
Q ss_pred CCceEEEEc-CCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCC-CCeEEEEEcc----ccC
Q 013008 189 PATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQP-GKTAAVFVEP----IQG 257 (451)
Q Consensus 189 ~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~-~~~aavi~ep----~~~ 257 (451)
++|+||+.+ +.|++..... ...+... ...+......+..++. .|+++|+++++. .++++|++++ +++
T Consensus 114 pGD~Vl~~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~n 191 (427)
T 3i16_A 114 PGNTMLSVCGEPYDTLHDVI-GITENSN-MGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWR 191 (427)
T ss_dssp TTCEEEESSSSCCGGGHHHH-TCSCCCS-SCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSS
T ss_pred CCCEEEEeCCCccHHHHHHH-hccccch-HHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCC
Confidence 689999998 8887654221 0000000 0000011122333443 489999999973 4789999999 667
Q ss_pred CCCccccCHHHHHHHHHHHHH--hCCEEEEeccccCCCcccccccccccCCCccee--eecccccC-C-cccccccccHH
Q 013008 258 EGGIYSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEK 331 (451)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~ 331 (451)
+.|.+.+ +++|+++|++ ||+++|+||+|..+....... ..+ .|++ +++|.+++ | ...|+++++++
T Consensus 192 ptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~gG~i~~~~~ 262 (427)
T 3i16_A 192 RALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT---DVG--ADLIAGSLIKNIGGGIAPTGGYLAGTKD 262 (427)
T ss_dssp CCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred CcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCcc---ccC--CeEEEecCcccCCCCCCceEEEEEECHH
Confidence 7776555 9999999999 999999999996542122211 123 4554 78899986 4 56799999999
Q ss_pred HHhhccC
Q 013008 332 VASAINY 338 (451)
Q Consensus 332 i~~~~~~ 338 (451)
+++.++.
T Consensus 263 li~~l~~ 269 (427)
T 3i16_A 263 CIEKTSY 269 (427)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 223
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.70 E-value=1.7e-15 Score=151.86 Aligned_cols=202 Identities=12% Similarity=0.108 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHhh---cccc-cCCCCCHHHHHHHHHHhhccCCCeEEe---cCCHHHHHHHHHHHHHHHhhhcCCCCC
Q 013008 115 GDADWIKAVVDQANV---LTHV-SNMYYSIPQIELAKRLVACSFADRVFF---SNTGTEANEAAIKFARKFQRHSNPDSK 187 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~---~~~~-~~~~~~~~~~~l~~~l~~~~~~e~v~~---~~sG~eA~~~al~~a~~~~~~~~~~~~ 187 (451)
++++|.+|+.+.... +... ...+......+|+++++++++.+..++ ++||++|+..++..+.
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all----------- 113 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNL----------- 113 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTC-----------
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhc-----------
Confidence 457888888775321 1111 112334458899999999999887777 8999999999988654
Q ss_pred CCCceEEEEc-CCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeC----CCHHHHHHhcCC-CCeEEEEEcc----ccC
Q 013008 188 EPATEFVSFT-NSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEY----GNIEATRKLIQP-GKTAAVFVEP----IQG 257 (451)
Q Consensus 188 ~~~~~ii~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~-~~~aavi~ep----~~~ 257 (451)
.++|.||+.+ +.|++..... ..++... ...+......+..++. .|+++|+++++. .++++|++++ +++
T Consensus 114 ~pGD~Vl~~~~~~y~~~~~~~-g~~~~~~-~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~n 191 (427)
T 3hvy_A 114 RPNDTMMSICGMPYDTLHDII-GMDDSKK-VGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWR 191 (427)
T ss_dssp CTTCEEEECSSSCCGGGHHHH-TCCTTCC-SCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSS
T ss_pred CCCCEEEEeCCCCchhHHHHh-ccccchh-hhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCC
Confidence 2689999998 8887764111 0000000 0000111122334444 589999999972 4789999999 666
Q ss_pred CCCccccCHHHHHHHHHHHHH--hCCEEEEeccccCCCcccccccccccCCCccee--eecccccC-C-cccccccccHH
Q 013008 258 EGGIYSATKEFLQFLRDACDD--AGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIM--TLAKPLAG-G-LPIGAALVTEK 331 (451)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~--~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~--t~sK~lg~-G-~~iG~v~~~~~ 331 (451)
+.|.+.+ +++|+++|++ ||+++|+||+|..+....... ..+ .|++ +++|.+++ | ...|+++++++
T Consensus 192 ptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~GG~i~~~~~ 262 (427)
T 3hvy_A 192 KSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT---DVG--ADIIAGSLIKNIGGGIATTGGYIAGKEE 262 (427)
T ss_dssp CCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred ccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCCc---ccC--CeEEEECCcccccccccceEEEEEECHH
Confidence 6665554 9999999999 899999999996442122211 123 4554 78899986 4 45688999999
Q ss_pred HHhhccC
Q 013008 332 VASAINY 338 (451)
Q Consensus 332 i~~~~~~ 338 (451)
+++.++.
T Consensus 263 li~~l~~ 269 (427)
T 3hvy_A 263 YVTQATF 269 (427)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 224
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.69 E-value=1.2e-15 Score=156.15 Aligned_cols=315 Identities=11% Similarity=0.022 Sum_probs=171.8
Q ss_pred HHHHHHHHHhhcccccCCC--CCHHHHHHHHHHhhccCCC-----------eEEecCCHHHHHHHHHHHHHHHh-hhcCC
Q 013008 119 WIKAVVDQANVLTHVSNMY--YSIPQIELAKRLVACSFAD-----------RVFFSNTGTEANEAAIKFARKFQ-RHSNP 184 (451)
Q Consensus 119 v~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~e-----------~v~~~~sG~eA~~~al~~a~~~~-~~~~~ 184 (451)
+.+++...+......+... ....+.+++++++++++.+ .+++|+||++|+..++.+++... ...+.
T Consensus 90 ~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~ 169 (486)
T 1js3_A 90 LADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQA 169 (486)
T ss_dssp HHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 5566666654322111111 1122445667777777733 48999999999999999886431 10000
Q ss_pred CCCCCC--------ce--EEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCC-----eEE
Q 013008 185 DSKEPA--------TE--FVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGK-----TAA 249 (451)
Q Consensus 185 ~~~~~~--------~~--ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-----~aa 249 (451)
. ++ ++ |++.++.|+.+. .+....|..... .+...+.. -|+++|+++|+++. +.+
T Consensus 170 ~---~gd~~~~~~~~~~~v~~s~~~h~s~~-~~~~~~G~~v~~---v~~d~~~~----~d~~~L~~~i~~~~~~g~~p~~ 238 (486)
T 1js3_A 170 A---SPGLTQGAVLEKLVAYASDQAHSSVE-RAGLIGGVKLKA---IPSDGKFA----MRASALQEALERDKAAGLIPFF 238 (486)
T ss_dssp H---STTCCHHHHHHHEEEEEETTCCHHHH-HHHHHHTCEEEE---ECCCTTSC----CCHHHHHHHHHHHHHTTCEEEE
T ss_pred c---CccchhcccCCCEEEEECCCCcHHHH-HHHHhCCCceEE---eecCCCCC----CCHHHHHHHHHHHHhCCCCceE
Confidence 0 01 23 556666665433 333332221111 11111111 18999999996321 234
Q ss_pred EEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC-Ccceeee--cccccCCcccccc
Q 013008 250 VFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAA 326 (451)
Q Consensus 250 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v 326 (451)
|++....++.|.+.+ +++|.++|++||+++++|++|.++......+.....++ ..|.+++ +|.++..+++|++
T Consensus 239 vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l 314 (486)
T 1js3_A 239 VVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAM 314 (486)
T ss_dssp EEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEE
T ss_pred EEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEE
Confidence 444444455666666 99999999999999999999976422211111111122 3576664 5988766888998
Q ss_pred cccHH--HHhhccC--C-Ccc-----------------CCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhC
Q 013008 327 LVTEK--VASAINY--G-DHG-----------------STFAGSPLVCNAAIAVLDKISNPAFLAS----------KLAR 374 (451)
Q Consensus 327 ~~~~~--i~~~~~~--~-~~~-----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~ 374 (451)
+++++ +.+.+.. . ... .+.....+.+.+++..+..-.-++..++ .++.
T Consensus 315 ~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~ 394 (486)
T 1js3_A 315 WVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ 394 (486)
T ss_dssp EESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88643 3444421 0 000 0011234444444443321000111111 2334
Q ss_pred CCCccee-cccceeEEEEecCC---hHHHHHHHHHCCceee-ec--CCCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHH
Q 013008 375 NPHVKDV-RGLGLIIGIEFDVS---ATPVVDACRDSGLLVL-TA--GKGNVVRLVP-PLIISEQELDQAVEILCKTLPVL 446 (451)
Q Consensus 375 ~~~~~~v-~g~G~~~~~~~~~~---~~~~~~~l~~~Gv~~~-~~--~~~~~iri~~-~~~~t~e~i~~~l~~l~~~l~~~ 446 (451)
.|.+..+ .+.+.++.|.+... ..++.+.|.++|+++. +. +....+|+++ +...|+++|++++++|+++++++
T Consensus 395 ~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~ 474 (486)
T 1js3_A 395 DPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (486)
T ss_dssp CTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEeCCCceeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5544332 23455666666321 4678888988886543 32 1125789985 44578999999999999998876
Q ss_pred hh
Q 013008 447 DS 448 (451)
Q Consensus 447 ~~ 448 (451)
.+
T Consensus 475 ~~ 476 (486)
T 1js3_A 475 LA 476 (486)
T ss_dssp HC
T ss_pred Hh
Confidence 53
No 225
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.68 E-value=9.8e-15 Score=149.23 Aligned_cols=289 Identities=14% Similarity=0.073 Sum_probs=165.3
Q ss_pred HHHHHHHHhhccCCC------------eEEecCCHHHHHHHHHHHHHHHhhhc----CCC----CCCCCceEEEEcCCcc
Q 013008 142 QIELAKRLVACSFAD------------RVFFSNTGTEANEAAIKFARKFQRHS----NPD----SKEPATEFVSFTNSFH 201 (451)
Q Consensus 142 ~~~l~~~l~~~~~~e------------~v~~~~sG~eA~~~al~~a~~~~~~~----~~~----~~~~~~~ii~~~~~yh 201 (451)
+.++.+++++.++.+ ..+|++||++||..|+.++|.....+ ++. +..++..|++.+. .|
T Consensus 120 E~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~-~H 198 (481)
T 4e1o_A 120 EMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQ-AH 198 (481)
T ss_dssp HHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETT-SC
T ss_pred HHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCc-ch
Confidence 555666677777632 57899999999999999998643210 000 0002444555544 45
Q ss_pred CChhhhhhccCCCCcCCCCcCCCCCeeEeeC-----CCHHHHHHhcCCC-----CeEEEEEccccCCCCccccCHHHHHH
Q 013008 202 GRTMGALALTSKEHYRSPFEPVMPGVNFVEY-----GNIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQF 271 (451)
Q Consensus 202 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~-----~~aavi~ep~~~~~G~~~~~~~~l~~ 271 (451)
.+...+..+.+.. ++.+|. -|+++|+++|++. .+.+|++....++.|.+.+ +++
T Consensus 199 ~s~~~~~~~~g~~------------~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~----l~~ 262 (481)
T 4e1o_A 199 SSVEKAGLISLVK------------MKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC----LSE 262 (481)
T ss_dssp HHHHHHHHHHTCE------------EEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHH
T ss_pred HHHHHHHHhCCCc------------eEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----HHH
Confidence 5544444443321 222222 2899999999632 1455555555566677766 999
Q ss_pred HHHHHHHhCCEEEEeccccCCCcccccccccccCC-Ccceeee--cccccCCccccccccc-HHHH-hhccCC--Cc---
Q 013008 272 LRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALVT-EKVA-SAINYG--DH--- 341 (451)
Q Consensus 272 l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~~-~~i~-~~~~~~--~~--- 341 (451)
|.++|++||+++++|++|.+....+..+.....++ ..|.+++ .|.++.....|+++.+ ++.. +.+... ..
T Consensus 263 I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~ 342 (481)
T 4e1o_A 263 LGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHA 342 (481)
T ss_dssp HHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCT
T ss_pred HHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCc
Confidence 99999999999999999976422222221112243 3577765 5988765666776665 3433 222110 00
Q ss_pred --c-----------CCCCCcHHHHHHHHHHHHHhcChHHHHH----------HHhCCCCcceec-ccceeEEEEecC---
Q 013008 342 --G-----------STFAGSPLVCNAAIAVLDKISNPAFLAS----------KLARNPHVKDVR-GLGLIIGIEFDV--- 394 (451)
Q Consensus 342 --~-----------~t~~~~~~~~aaa~aal~~~~~~~~~~~----------~~~~~~~~~~v~-g~G~~~~~~~~~--- 394 (451)
. .+.....+.+.+++..+..-.-++..++ .++..|.+..+. ....++.|.+..
T Consensus 343 ~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~ 422 (481)
T 4e1o_A 343 NSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNS 422 (481)
T ss_dssp TTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHH
T ss_pred ccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchH
Confidence 0 0111134444444444321000111111 334555443332 334566666632
Q ss_pred ChHHHHHHHHHCCce-eeecC--CCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHh
Q 013008 395 SATPVVDACRDSGLL-VLTAG--KGNVVRLVPP-LIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 395 ~~~~~~~~l~~~Gv~-~~~~~--~~~~iri~~~-~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
...++.+.|.++|++ +.+.. ....+|+++. ...|++||++++++|+++++++.
T Consensus 423 ~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 423 LTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp HHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 246788889988854 44421 1257898855 45589999999999999988764
No 226
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.66 E-value=9e-15 Score=149.21 Aligned_cols=294 Identities=11% Similarity=0.014 Sum_probs=162.1
Q ss_pred HHHHHHHHhhccCCC-----------eEEecCCHHHHHHHHHHHHHHHhhhc----CCCC----CCCCceEEEEcCCccC
Q 013008 142 QIELAKRLVACSFAD-----------RVFFSNTGTEANEAAIKFARKFQRHS----NPDS----KEPATEFVSFTNSFHG 202 (451)
Q Consensus 142 ~~~l~~~l~~~~~~e-----------~v~~~~sG~eA~~~al~~a~~~~~~~----~~~~----~~~~~~ii~~~~~yhg 202 (451)
+.++.+++++.++.+ ..+|++||++||..|+.++|...... ++.- ..+++.|++ +...|.
T Consensus 115 E~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~-s~~~H~ 193 (475)
T 3k40_A 115 EVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYC-SDQAHS 193 (475)
T ss_dssp HHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEE-ETTSCH
T ss_pred HHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEE-CCCchH
Confidence 455666677777733 68999999999999999997543210 0000 001234444 445555
Q ss_pred ChhhhhhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCC-----CeEEEEEccccCCCCccccCHHHHHHHHHHHH
Q 013008 203 RTMGALALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPG-----KTAAVFVEPIQGEGGIYSATKEFLQFLRDACD 277 (451)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-----~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~ 277 (451)
+...+....+..... .+...+. -|+++|+++|++. .+.+|++.-..++.|.+.+ +++|.++|+
T Consensus 194 s~~~~~~~~g~~~~~---v~~d~~~-----~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l~~I~~la~ 261 (475)
T 3k40_A 194 SVERAGLLGGVKLRS---VQSENHR-----MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----LDECGPVGN 261 (475)
T ss_dssp HHHHHHHHHTCEEEE---ECCBTTB-----CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHH
T ss_pred HHHHHHHHcCCceEE---EECCCCC-----cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----HHHHHHHHH
Confidence 554444443321111 1111111 2899999999632 1444555544555677766 999999999
Q ss_pred HhCCEEEEeccccCCCcccccccccccCC-Ccceeee--cccccCCcccccccccH-HHH-hhccCC--C--c---c---
Q 013008 278 DAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPDIMTL--AKPLAGGLPIGAALVTE-KVA-SAINYG--D--H---G--- 342 (451)
Q Consensus 278 ~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pdi~t~--sK~lg~G~~iG~v~~~~-~i~-~~~~~~--~--~---~--- 342 (451)
+||+++++|++|.+....+..+.....++ ..|.+++ .|.+++...+|+++.++ +.. +.+... . . .
T Consensus 262 ~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~ 341 (475)
T 3k40_A 262 KHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP 341 (475)
T ss_dssp HTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------------------
T ss_pred HhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCC
Confidence 99999999999965322222111111233 4577766 59887656677777654 332 222100 0 0 0
Q ss_pred ----CCC-CCcHHHHHHHHHHHHHhcChHH---HHH----------HHhCCCCccee-cccceeEEEEecC---ChHHHH
Q 013008 343 ----STF-AGSPLVCNAAIAVLDKISNPAF---LAS----------KLARNPHVKDV-RGLGLIIGIEFDV---SATPVV 400 (451)
Q Consensus 343 ----~t~-~~~~~~~aaa~aal~~~~~~~~---~~~----------~~~~~~~~~~v-~g~G~~~~~~~~~---~~~~~~ 400 (451)
.++ .+-++......++|+.+..+.+ .++ .++..|.+..+ .....++.|.+.. ...++.
T Consensus 342 ~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~~~~~~l~ 421 (475)
T 3k40_A 342 DYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALL 421 (475)
T ss_dssp -------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCHHHHHHHH
T ss_pred CcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCchHHHHHHH
Confidence 001 1111222223333333222211 111 23445544333 2334556666632 246788
Q ss_pred HHHHHCCcee-eecC-C-CCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 401 DACRDSGLLV-LTAG-K-GNVVRLVPP-LIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 401 ~~l~~~Gv~~-~~~~-~-~~~iri~~~-~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
++|.++|.++ .+.. . ...+|+++. ..+|++||++++++|+++++++..
T Consensus 422 ~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 422 KRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp HHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 8899888754 3321 1 257899865 446899999999999999988754
No 227
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.65 E-value=1e-14 Score=154.94 Aligned_cols=286 Identities=13% Similarity=0.035 Sum_probs=166.3
Q ss_pred HHHHHHHHHHhhccCCCeEE-ecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCC
Q 013008 140 IPQIELAKRLVACSFADRVF-FSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRS 218 (451)
Q Consensus 140 ~~~~~l~~~l~~~~~~e~v~-~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 218 (451)
....++++.++++++.+..+ +++|+++|+..++.++. .++|+||+..++|+......+.++|......
T Consensus 173 ~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~-----------~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v 241 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALV-----------SNGDLVLFDRNNHKSVYNSALAMAGGRPVYL 241 (730)
T ss_dssp THHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHC-----------CTTCEEEEETTCCHHHHHHHTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhc-----------CCCCEEEEcCCchHHHHHHHHHHCCCEEEEE
Confidence 34788999999999976655 55555699999998664 2688999999887654433133333221100
Q ss_pred CCcCCCCCe-eEeeCCCHHHH-----HHhcCCC------C----eEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCE
Q 013008 219 PFEPVMPGV-NFVEYGNIEAT-----RKLIQPG------K----TAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGAL 282 (451)
Q Consensus 219 ~~~~~~~~~-~~~~~~d~~~l-----e~~l~~~------~----~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~l 282 (451)
......-+. ..+ |+++| ++++++. . ..+++++|. ..|.+.+ +++|.++|++||++
T Consensus 242 ~~~~~~~~i~g~i---d~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn--~~G~v~d----l~~I~~la~~~g~~ 312 (730)
T 1c4k_A 242 QTNRNPYGFIGGI---YDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT--YDGTIYN----AHEVVKRIGHLCDY 312 (730)
T ss_dssp CEEECTTCCEEEE---CGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBC--TTSEEEC----HHHHHHHHGGGBSE
T ss_pred eCCccccCccCCC---CHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCC--CCCeecC----HHHHHHHHHHcCCe
Confidence 000000000 011 55555 8888753 2 345555553 4677766 99999999999999
Q ss_pred EEEeccccC-CCccc--c---cccccccCCC-cc-ee--eecccccCCccc-ccccccHHHH-------h--hccCC-Cc
Q 013008 283 LVFDEVQCG-LGRTG--Y---LWAHEHYGIF-PD-IM--TLAKPLAGGLPI-GAALVTEKVA-------S--AINYG-DH 341 (451)
Q Consensus 283 lI~DEv~tg-~gr~G--~---~~~~~~~~~~-pd-i~--t~sK~lg~G~~i-G~v~~~~~i~-------~--~~~~~-~~ 341 (451)
||+||+|.+ ++..+ . ....+.++.. ++ ++ +++|+++| ++. |++..+++.+ + .+... ..
T Consensus 313 livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g-~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~ 391 (730)
T 1c4k_A 313 IEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNL 391 (730)
T ss_dssp EEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGGTTSTTCCCHHHHHHHHHH
T ss_pred EEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCC-CCCEEEEEecchhhcCcccccCHHHHHHHHHH
Confidence 999999963 22111 1 0111122332 11 44 56898864 343 4443332211 1 11110 11
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcC---hHHHHH-----------HHhCCCCcceecc------------------------
Q 013008 342 GSTFAGSPLVCNAAIAVLDKISN---PAFLAS-----------KLARNPHVKDVRG------------------------ 383 (451)
Q Consensus 342 ~~t~~~~~~~~aaa~aal~~~~~---~~~~~~-----------~~~~~~~~~~v~g------------------------ 383 (451)
..+.+.++..+++..++++.+.. .++.++ +.+.++.+....+
T Consensus 392 ~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~ 471 (730)
T 1c4k_A 392 FMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWR 471 (730)
T ss_dssp HSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGB
T ss_pred hCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhc
Confidence 22334566666766677776543 223332 2232332221110
Q ss_pred --------------cce-e-----EEEEec-------------CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHH
Q 013008 384 --------------LGL-I-----IGIEFD-------------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQ 430 (451)
Q Consensus 384 --------------~G~-~-----~~~~~~-------------~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e 430 (451)
.+. + +.+... ..+..+.+.|.++||.+...+. ..+|+.++..+|++
T Consensus 472 ~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~-~~ir~~~s~g~t~e 550 (730)
T 1c4k_A 472 FEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDL-NSILFLMTPAETPA 550 (730)
T ss_dssp CCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECS-SEEEEECCTTCCHH
T ss_pred cCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCC-CeEEEEeCCCCCHH
Confidence 111 1 233331 2467889999999999987665 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013008 431 ELDQAVEILCKTLPVLD 447 (451)
Q Consensus 431 ~i~~~l~~l~~~l~~~~ 447 (451)
++++++++|.++.+...
T Consensus 551 ~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 551 KMNNLITQLLQLQRLIE 567 (730)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999887654
No 228
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.63 E-value=1.1e-14 Score=147.08 Aligned_cols=268 Identities=15% Similarity=0.087 Sum_probs=153.4
Q ss_pred HHHHHHHHHhhccCCC--eEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhh---ccCCCC
Q 013008 141 PQIELAKRLVACSFAD--RVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALA---LTSKEH 215 (451)
Q Consensus 141 ~~~~l~~~l~~~~~~e--~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~---~~~~~~ 215 (451)
...++.++++++++.+ .+.+++|++.|+++++.+++ .. ++++||+.++.|+........ ..|...
T Consensus 109 ~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~~---------~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v 178 (438)
T 1wyu_A 109 ATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ET---------GRMGVLVSQGVHPEYRAVLRAYLEAVGAKL 178 (438)
T ss_dssp HHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HH---------TCCEEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-cC---------CCCEEEEcCccCHhHHHHHHHHHHHCCCEE
Confidence 3678889999998854 45789989855555544332 21 588999998887554322211 112111
Q ss_pred cCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEe--ccccCCC
Q 013008 216 YRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD--EVQCGLG 293 (451)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D--Ev~tg~g 293 (451)
.. .+...+ .+ |+++ +.+ ++++|++... ++.|.+.+ +++|.++|++||+++|+| +.. +|
T Consensus 179 ~~---v~~~~~--~~---d~~~----i~~-~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a--~g 238 (438)
T 1wyu_A 179 LT---LPLEGG--RT---PLPE----VGE-EVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS--LG 238 (438)
T ss_dssp EE---ECCBTT--BC---CCCC----CCT-TEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG--GG
T ss_pred EE---EcCcCC--cc---CHHH----hCC-CeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh--cc
Confidence 00 011000 01 2222 443 5677776665 66777766 999999999999999955 332 22
Q ss_pred cccccccccccCCCcceeeec-cccc-----CCcccccccccHHHHhhccCCC--------------------------c
Q 013008 294 RTGYLWAHEHYGIFPDIMTLA-KPLA-----GGLPIGAALVTEKVASAINYGD--------------------------H 341 (451)
Q Consensus 294 r~G~~~~~~~~~~~pdi~t~s-K~lg-----~G~~iG~v~~~~~i~~~~~~~~--------------------------~ 341 (451)
..... ..+ .+|++++| |.++ +|.++|++++++++++.+.... .
T Consensus 239 ~~~~~---~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~ 313 (438)
T 1wyu_A 239 VLKPP---GAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRA 313 (438)
T ss_dssp TBCCH---HHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGG
T ss_pred CcCCC---ccC--CCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchh
Confidence 21111 222 36887774 7543 2457899999998877653210 0
Q ss_pred cCCCCC---cHHHHHHHHHHHHHhcChH---HHHH----------HHhCCCCcceecccceeEE--EEecCChHHHHHHH
Q 013008 342 GSTFAG---SPLVCNAAIAVLDKISNPA---FLAS----------KLARNPHVKDVRGLGLIIG--IEFDVSATPVVDAC 403 (451)
Q Consensus 342 ~~t~~~---~~~~~aaa~aal~~~~~~~---~~~~----------~~~~~~~~~~v~g~G~~~~--~~~~~~~~~~~~~l 403 (451)
..|.+. +.+...++...+..+..+. ..++ .++.++.+........+.. +.+.....++.+.|
T Consensus 314 ~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L 393 (438)
T 1wyu_A 314 KAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRRAL 393 (438)
T ss_dssp GSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSSCHHHHHHHH
T ss_pred cccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCCCCHHHHHHHH
Confidence 123322 2222222212233222211 1111 2344443332222233332 33334678899999
Q ss_pred HHCCcee--eecC--CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 013008 404 RDSGLLV--LTAG--KGNVVRLVPPLIISEQELDQAVEILCKTL 443 (451)
Q Consensus 404 ~~~Gv~~--~~~~--~~~~iri~~~~~~t~e~i~~~l~~l~~~l 443 (451)
.++||.+ .++. ..+.+|+++...+|++|+++++++|++++
T Consensus 394 ~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 394 AERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp HHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 9999998 4442 14789999998899999999999998764
No 229
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.52 E-value=4.4e-13 Score=143.56 Aligned_cols=284 Identities=18% Similarity=0.099 Sum_probs=165.1
Q ss_pred HHHHHHHHHhhccCCCe-EEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCC
Q 013008 141 PQIELAKRLVACSFADR-VFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSP 219 (451)
Q Consensus 141 ~~~~l~~~l~~~~~~e~-v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 219 (451)
...++.+.+++.++.+. +++++|+++|+..++.++. .++|+||+.+++|+..... +..+|.....
T Consensus 206 ~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~-----------~~GD~Vlv~~~~h~s~~~~-~~~~G~~~v~-- 271 (755)
T 2vyc_A 206 AFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM-----------TDNDVVVVDRNCHKSIEQG-LMLTGAKPVY-- 271 (755)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC-----------CTTCEEEEESSCCHHHHHH-HHHHCCEEEE--
T ss_pred HHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhc-----------CCCCEEEECCCchHHHHHH-HHHcCCEEEE--
Confidence 35677788888888554 5566666799999998665 2689999999987654433 3333322111
Q ss_pred CcCCCCC-ee-EeeCC----CHHHHHHhcCCC-Ce---------EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEE
Q 013008 220 FEPVMPG-VN-FVEYG----NIEATRKLIQPG-KT---------AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALL 283 (451)
Q Consensus 220 ~~~~~~~-~~-~~~~~----d~~~le~~l~~~-~~---------aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~ll 283 (451)
.+...+ .. .-+.+ |+++|++++++. ++ .+++++| + ..|.+.+ +++|.++|++||++|
T Consensus 272 -v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n-~~G~v~d----l~~I~~ia~~~~~~l 344 (755)
T 2vyc_A 272 -MVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-T-YDGVCYN----AKEAQDLLEKTSDRL 344 (755)
T ss_dssp -ECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-C-TTSEEEC----HHHHHHHHTTTCSEE
T ss_pred -EeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-C-CCceecC----HHHHHHHHHHcCCEE
Confidence 011000 00 00000 789999998621 22 4566665 3 4677666 999999999999999
Q ss_pred EEeccccCCCcccccc-cccc-cC--CC---cc---eeeecccccCCcc-cccccccHH--HH--hhccCC-CccCCCCC
Q 013008 284 VFDEVQCGLGRTGYLW-AHEH-YG--IF---PD---IMTLAKPLAGGLP-IGAALVTEK--VA--SAINYG-DHGSTFAG 347 (451)
Q Consensus 284 I~DEv~tg~gr~G~~~-~~~~-~~--~~---pd---i~t~sK~lg~G~~-iG~v~~~~~--i~--~~~~~~-~~~~t~~~ 347 (451)
|+||+|.+.-..+..+ .... .+ .. +. +.+++|+++| ++ .|++.++++ .. ..+... ....+.+.
T Consensus 345 ivDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g-~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp 423 (755)
T 2vyc_A 345 HFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYMMHATTSP 423 (755)
T ss_dssp EEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSC-CTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSC
T ss_pred EEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccC-cCCeeeeeecCcccccCHHHHHHHHHHhCCCCH
Confidence 9999996421122110 0011 22 11 11 2367898864 34 455555433 11 111110 11223445
Q ss_pred cHHHHHHHHHHHHHhcCh---HHHHH----------HHhCCCC---------cc-----eecc-----------------
Q 013008 348 SPLVCNAAIAVLDKISNP---AFLAS----------KLARNPH---------VK-----DVRG----------------- 383 (451)
Q Consensus 348 ~~~~~aaa~aal~~~~~~---~~~~~----------~~~~~~~---------~~-----~v~g----------------- 383 (451)
+.+.+++..++++.+..+ +++++ .+++++. +. .+.+
T Consensus 424 ~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (755)
T 2vyc_A 424 LYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLL 503 (755)
T ss_dssp CHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhc
Confidence 677777777888877653 34433 1111111 10 0000
Q ss_pred ----------------------cc------eeEEEEec------------CChHHHHHHHHHCCceeeecCCCCEEEEeC
Q 013008 384 ----------------------LG------LIIGIEFD------------VSATPVVDACRDSGLLVLTAGKGNVVRLVP 423 (451)
Q Consensus 384 ----------------------~G------~~~~~~~~------------~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~ 423 (451)
.| ..+.+.+. .++..+.+.|.++||.+...+. +.+|+.+
T Consensus 504 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~~-~~v~~~~ 582 (755)
T 2vyc_A 504 TTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTD-FQIMFLF 582 (755)
T ss_dssp HHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEECS-SEEEEEC
T ss_pred cchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecCC-CeEEEEE
Confidence 12 12233322 1236788888889998876555 7899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q 013008 424 PLIISEQELDQAVEILCKTLPVLD 447 (451)
Q Consensus 424 ~~~~t~e~i~~~l~~l~~~l~~~~ 447 (451)
+...|++++++++++|.+..+...
T Consensus 583 ~~g~t~~~~~~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 583 SMGVTRGKWGTLVNTLCSFKRHYD 606 (755)
T ss_dssp CTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999998876543
No 230
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.41 E-value=2.7e-12 Score=126.21 Aligned_cols=300 Identities=10% Similarity=0.010 Sum_probs=174.4
Q ss_pred CCCCCHHHHHHHHHHHhhccc-ccCC---CC-----CHHHHHHHHHHhhccC-C--CeEEe-cCCHHHHHHHHHHHHHHH
Q 013008 112 LGHGDADWIKAVVDQANVLTH-VSNM---YY-----SIPQIELAKRLVACSF-A--DRVFF-SNTGTEANEAAIKFARKF 178 (451)
Q Consensus 112 lG~~~p~v~~a~~~~~~~~~~-~~~~---~~-----~~~~~~l~~~l~~~~~-~--e~v~~-~~sG~eA~~~al~~a~~~ 178 (451)
.+.-+|+|.+++.+.+.++.. +... .+ .....+..+.++++++ . ++|+| +.|||+|++.++..+...
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~ 100 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL 100 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC
Confidence 345789999999998764321 1111 11 1225567777888887 2 46888 578999999999865421
Q ss_pred hhhcCCCCCCCCceEEEEcCCccCChhhhhh-ccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEccccC
Q 013008 179 QRHSNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVEPIQG 257 (451)
Q Consensus 179 ~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~ep~~~ 257 (451)
. ++|++++..-+.++....-.. ..|.... ..+...+... +++.++..+.+ ++++|.+..+..
T Consensus 101 ~---------~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~---~~~~~~~~~~----~~~~~~~~i~~-~t~lV~~~h~et 163 (377)
T 3e77_A 101 K---------AGRCADYVVTGAWSAKAAEEAKKFGTINI---VHPKLGSYTK----IPDPSTWNLNP-DASYVYYCANET 163 (377)
T ss_dssp S---------TTCEEEECCCSHHHHHHHHHHTTTSEEEE---CSCCCSSSCS----CCCGGGCCCCT-TCSCEEEESEET
T ss_pred C---------CCCeEEEEECCHHHHHHHHHHHHhCCceE---EeccCCCcCC----CCChHHhccCC-CccEEEEeCccC
Confidence 0 267887776666654211111 0111100 0111111111 33445555544 556666555555
Q ss_pred CCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHHHHhh
Q 013008 258 EGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEKVASA 335 (451)
Q Consensus 258 ~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~i~~~ 335 (451)
..|.+.| + +|+++|+++++|-+++ +|. ...-.+.++ ++++| |.+| ...+|++++++++.+.
T Consensus 164 ~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~--~~id~~~~~----~~~~s~~K~~g-p~G~g~l~~~~~~l~~ 226 (377)
T 3e77_A 164 VHGVEFD----F-----IPDVKGAVLVCDMSSN-FLS--KPVDVSKFG----VIFAGAQKNVG-SAGVTVVIVRDDLLGF 226 (377)
T ss_dssp TTTEECS----S-----CCCCTTCCEEEECTTT-TTS--SCCCGGGCS----EEEEEGGGTTS-CTTCEEEEEETTSCSC
T ss_pred chheEch----h-----hhccCCCEEEEEcccc-cCC--CCCchhhcC----EEEEecccccC-CCccEEEEEcHHHHhh
Confidence 5677766 3 5889999999999996 432 222333444 34444 9894 3457778888777654
Q ss_pred ccCC-----------CccCCCC-CcHHHHHHHHHHHHHhcCh-HH---HHH----------HHhCCCCcc-ee---ccc-
Q 013008 336 INYG-----------DHGSTFA-GSPLVCNAAIAVLDKISNP-AF---LAS----------KLARNPHVK-DV---RGL- 384 (451)
Q Consensus 336 ~~~~-----------~~~~t~~-~~~~~~aaa~aal~~~~~~-~~---~~~----------~~~~~~~~~-~v---~g~- 384 (451)
+.+. ....+++ .|..+..+..++|+.+.+. ++ .++ .++.+|.+. .. ...
T Consensus 227 ~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs 306 (377)
T 3e77_A 227 ALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRS 306 (377)
T ss_dssp CCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBC
T ss_pred ccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcC
Confidence 4321 0122333 3555666666788876544 22 111 223454332 11 112
Q ss_pred ceeEEEEecC-C--h---HHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 385 GLIIGIEFDV-S--A---TPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 385 G~~~~~~~~~-~--~---~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
+..+.|.++. . . ..+.+.|.++||.+.++.. .+.+|+++....|+||||.+++.|++++++
T Consensus 307 ~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 307 KMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp SSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456676642 1 1 3577778889999877632 245999999999999999999999998865
No 231
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.38 E-value=6e-12 Score=132.80 Aligned_cols=279 Identities=13% Similarity=0.118 Sum_probs=165.2
Q ss_pred HHHHHHHHHhhccCCCeEEecCCH-HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCC-CcCC
Q 013008 141 PQIELAKRLVACSFADRVFFSNTG-TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKE-HYRS 218 (451)
Q Consensus 141 ~~~~l~~~l~~~~~~e~v~~~~sG-~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~-~~~~ 218 (451)
...++++++++.++.++.+|+++| +.||..++.++. .++|+||+..++|.. ...++.+++.. .+..
T Consensus 196 ~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~-----------~pGD~VLv~r~~H~S-~~~~l~lsGa~pv~v~ 263 (715)
T 3n75_A 196 PHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSA-----------PAGSTILIDRNCHKS-LTHLMMMSDVTPIYFR 263 (715)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC-----------CTTCEEEEESSCCHH-HHHHHHHSCCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhC-----------CCCCEEEECCCccHH-HHHHHHHcCCEEEEEe
Confidence 367889999999998887776666 699999888665 268899988887644 44445554432 2211
Q ss_pred CCcCCCCCeeEeeCC------CHHHHHHhcCC-CCe----EEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEec
Q 013008 219 PFEPVMPGVNFVEYG------NIEATRKLIQP-GKT----AAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDE 287 (451)
Q Consensus 219 ~~~~~~~~~~~~~~~------d~~~le~~l~~-~~~----aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DE 287 (451)
.. .+-.-++.+ |+++|++++++ .+. ++|+++| +..|.+.+ +++|.++|++++ +|+||
T Consensus 264 ~~----~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livDE 331 (715)
T 3n75_A 264 PT----RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFDS 331 (715)
T ss_dssp CC----BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEEC
T ss_pred cc----ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEcc
Confidence 10 000011111 79999999972 122 4666777 56777776 899999998774 79999
Q ss_pred cccCCCccccccc-cc--ccCCCcce-----eeecccccCCc-ccccccccHHHH-hhccC-CCccCCCCCcHHHHHHHH
Q 013008 288 VQCGLGRTGYLWA-HE--HYGIFPDI-----MTLAKPLAGGL-PIGAALVTEKVA-SAINY-GDHGSTFAGSPLVCNAAI 356 (451)
Q Consensus 288 v~tg~gr~G~~~~-~~--~~~~~pdi-----~t~sK~lg~G~-~iG~v~~~~~i~-~~~~~-~~~~~t~~~~~~~~aaa~ 356 (451)
+|...-..+..+. .. ..+..+|+ .+++|++++ + ..|++.+++++. +.+.. .....|.+.+++.+++..
T Consensus 332 AH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~Asld 410 (715)
T 3n75_A 332 AWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTE 410 (715)
T ss_dssp TTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred ccccccccCCccccccccccCcCCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 9964312232211 11 11222564 367899874 2 346666654321 11211 122345567888888888
Q ss_pred HHHHHhcC---hHHHHH-------H---HhCCCC------cce-----ec-------------------cccee------
Q 013008 357 AVLDKISN---PAFLAS-------K---LARNPH------VKD-----VR-------------------GLGLI------ 387 (451)
Q Consensus 357 aal~~~~~---~~~~~~-------~---~~~~~~------~~~-----v~-------------------g~G~~------ 387 (451)
++++.++. +++.++ + +++++. +.. +. +.+.+
T Consensus 411 aA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~K 490 (715)
T 3n75_A 411 TAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIK 490 (715)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTE
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeE
Confidence 89988763 344444 1 111110 000 00 00100
Q ss_pred EEEEec------------CChHHHHHHHHHCCceeeecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 388 IGIEFD------------VSATPVVDACRDSGLLVLTAGKGNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 388 ~~~~~~------------~~~~~~~~~l~~~Gv~~~~~~~~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
+.+... ..+..+.+.|.++||.+--... +.+-+.++...|++++++++++|.+.-+.
T Consensus 491 l~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~-~~vl~l~s~g~~~~~~~~L~~aL~~~~~~ 559 (715)
T 3n75_A 491 VTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGP-YNLLFLFSIGIDKTKALSLLRALTDFKRA 559 (715)
T ss_dssp EEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEET-TEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCC-CcEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 111111 1235778888889998876655 55667778889999999999998876544
No 232
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.34 E-value=6.2e-11 Score=116.02 Aligned_cols=285 Identities=7% Similarity=-0.055 Sum_probs=165.6
Q ss_pred CCHHHHHHHHHHHhhccc-ccCC---CC-----CHHHHHHHHHHhhccCC---CeEEe-cCCHHHHHHHHHHHHHHHhhh
Q 013008 115 GDADWIKAVVDQANVLTH-VSNM---YY-----SIPQIELAKRLVACSFA---DRVFF-SNTGTEANEAAIKFARKFQRH 181 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~~~~-~~~~---~~-----~~~~~~l~~~l~~~~~~---e~v~~-~~sG~eA~~~al~~a~~~~~~ 181 (451)
-+|+|.+++.+.+.++.. .++. .+ .....+..+.++++++. ++|+| |+|||+|++.++..+.
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~----- 90 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA----- 90 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-----
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-----
Confidence 589999999987754221 1110 11 12356677778888873 37888 9999999999998554
Q ss_pred cCCCCCCCCceEEEEcCCccCChhhhhh-ccCCCCcCCCCcCCCCCeeEeeCC-------CHHHHHHhcCCCCeEEEEEc
Q 013008 182 SNPDSKEPATEFVSFTNSFHGRTMGALA-LTSKEHYRSPFEPVMPGVNFVEYG-------NIEATRKLIQPGKTAAVFVE 253 (451)
Q Consensus 182 ~~~~~~~~~~~ii~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~aavi~e 253 (451)
++++++...-+.+++...... ..| ..+..++.+ +++. + |++ ++++|.+.
T Consensus 91 -------~~~~~~~i~~~~~~~~~~~~a~~~G------------~~v~~~~~~~~g~~~~~~~~--~-l~~-~t~lv~~~ 147 (361)
T 3m5u_A 91 -------LNGVCEYANTGVWTKKAIKEAQILG------------VNVKTVASSEESNFDHIPRV--E-FSD-NADYAYIC 147 (361)
T ss_dssp -------CSSCEEEEECSHHHHHHHHHHHHTT------------CCEEEEEECTTTTSCSCCCC--C-CCT-TSSEEEEE
T ss_pred -------CCCeEEEEeCCHHHHHHHHHHHHcC------------CceEEEecccCcCCCcCChh--h-cCC-CCCEEEEe
Confidence 245553333333343211111 001 111111110 2233 3 654 45566664
Q ss_pred cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeec--ccccCCcccccccccHH
Q 013008 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTEK 331 (451)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~~ 331 (451)
.+....|.+.+. +|+ +|+++++|-+++ +|.. ..-.+ ..|++++| |.+| .-.+|+++++++
T Consensus 148 ~~e~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~--~id~~----~~d~~~~s~~K~~g-p~G~g~l~~~~~ 209 (361)
T 3m5u_A 148 SNNTIYGTQYQN---------YPK-TKTPLIVDASSD-FFSR--KVDFS----NIALFYGGVQKNAG-ISGLSCIFIRKD 209 (361)
T ss_dssp SEETTTTEECSS---------CCC-CSSCEEEECGGG-TTSS--CCCCT----TEEEEEEETTTTSS-CTTCEEEEEEHH
T ss_pred CCCCCcceeCCc---------ccc-cCCEEEEEcccc-cCCC--CCCcc----cCCEEEEechhccC-CCccEEEEEcHH
Confidence 444445765442 444 499999999996 5322 11121 25777776 8884 345788888988
Q ss_pred HHhhccC----CC--------ccCCC-CCcHHHHHHHHHHHHHhcCh-HH---HHH----------HHhCCCCc-cee-c
Q 013008 332 VASAINY----GD--------HGSTF-AGSPLVCNAAIAVLDKISNP-AF---LAS----------KLARNPHV-KDV-R 382 (451)
Q Consensus 332 i~~~~~~----~~--------~~~t~-~~~~~~~aaa~aal~~~~~~-~~---~~~----------~~~~~~~~-~~v-~ 382 (451)
+.+.+.+ .. ...++ +.|..+..+..++|+.+.+. ++ .++ .++.++.+ ... .
T Consensus 210 ~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~ 289 (361)
T 3m5u_A 210 MLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHAD 289 (361)
T ss_dssp HHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSC
T ss_pred HHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCC
Confidence 8765533 10 12222 34556667777888877554 22 121 22344422 111 1
Q ss_pred --c-cceeEEEEecC--C-hHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 383 --G-LGLIIGIEFDV--S-ATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 383 --g-~G~~~~~~~~~--~-~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
. ....+.|.++. . ..++...|.++||.+.++.. -+.+|+++....|+||||++++.|+++.++
T Consensus 290 ~~~rs~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 290 KKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp GGGBCSSEEEEEESSCTTHHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEECCCchhhhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 1 13356666642 1 24677888889999876632 134999999999999999999999998765
No 233
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.33 E-value=6.5e-12 Score=124.12 Aligned_cols=307 Identities=9% Similarity=-0.015 Sum_probs=169.2
Q ss_pred CEEEeeccCcccccCCCCCHHHHHHHHHHHhhccc-ccCC------C--CCHHHHHHHHHHhhccC-C--CeEEe-cCCH
Q 013008 98 REYLDLSSGIAVNALGHGDADWIKAVVDQANVLTH-VSNM------Y--YSIPQIELAKRLVACSF-A--DRVFF-SNTG 164 (451)
Q Consensus 98 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~------~--~~~~~~~l~~~l~~~~~-~--e~v~~-~~sG 164 (451)
+.|+|..+.. .-+|+|.+++.+.+.+... .+.. . ......+..+.++++++ . ++|+| +.||
T Consensus 27 ~~yl~~agpt------~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~ 100 (386)
T 3qm2_A 27 QVFNFSSGPA------MLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG 100 (386)
T ss_dssp CCEECCSSSC------CCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred cCccccCCCC------CCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence 4577654432 2689999999876654211 1110 0 11224567777888877 2 46888 6899
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhc-cCCCCcCCCCcCCC---CCeeEeeCCCHHHHHH
Q 013008 165 TEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALAL-TSKEHYRSPFEPVM---PGVNFVEYGNIEATRK 240 (451)
Q Consensus 165 ~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~d~~~le~ 240 (451)
|+|++.+++.+.. +++++++..-+.++........ .| .. . +.+.. .+... |+++++.
T Consensus 101 T~a~n~ai~~l~~-----------~gd~v~~~~~~~~~~~~~~~a~~~G-~v-~--~v~~~~~~~G~~~----~~~~~~~ 161 (386)
T 3qm2_A 101 RGQFAGVPLNLLG-----------DKTTADYVDAGYWAASAIKEAKKYC-AP-Q--IIDAKITVDGKRA----VKPMREW 161 (386)
T ss_dssp THHHHHHHHHHCT-----------TCCEEEEEESSHHHHHHHHHHTTTS-EE-E--EEECEEEETTEEE----ECCGGGC
T ss_pred hHHHHHHHHhccC-----------CCCeEEEEeCCHHHHHHHHHHHHhC-Ce-E--EEecCcccCCCCC----CchHHHh
Confidence 9999999986531 4778776665555542111110 01 00 0 01111 11101 3456666
Q ss_pred hcCCCCeEEEEEccccCCCCcc-ccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCCCcceeeecccccC
Q 013008 241 LIQPGKTAAVFVEPIQGEGGIY-SATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGIFPDIMTLAKPLAG 319 (451)
Q Consensus 241 ~l~~~~~aavi~ep~~~~~G~~-~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~~pdi~t~sK~lg~ 319 (451)
.+.+ ++++|.+..+....|.+ .| +++|. +|+++++|-+++ +|.. ..-.+.++ .++.+--|.+|
T Consensus 162 ~l~~-~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~g~~--pidv~~~~--~~~~s~hK~lG- 225 (386)
T 3qm2_A 162 QLSD-NAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST-ILSA--PLDVSRYG--VIYAGAQKNIG- 225 (386)
T ss_dssp CCCT-TCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT-TTSS--CCCGGGCS--EEEEETTTTTC-
T ss_pred hcCC-CCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc-cCCC--CCCccccC--EEEEecccccC-
Confidence 6754 56667666665566774 44 44443 899999999996 5322 22333343 23333338884
Q ss_pred CcccccccccHHHHhhccCCC-----------ccCCC-CCcHHHHHHHHHHHHHhcCh-HHH---HH----------HHh
Q 013008 320 GLPIGAALVTEKVASAINYGD-----------HGSTF-AGSPLVCNAAIAVLDKISNP-AFL---AS----------KLA 373 (451)
Q Consensus 320 G~~iG~v~~~~~i~~~~~~~~-----------~~~t~-~~~~~~~aaa~aal~~~~~~-~~~---~~----------~~~ 373 (451)
...+|++.+++++.+.+.+.. ....+ +.|..+..+..++++.+.+. ++. ++ .++
T Consensus 226 P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~ 305 (386)
T 3qm2_A 226 PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVID 305 (386)
T ss_dssp CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888765443210 01111 23444555666777765443 221 11 123
Q ss_pred CCCCccee---ccc-ceeEEEEecC--ChHHHHHHHHHCCceeeecCC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q 013008 374 RNPHVKDV---RGL-GLIIGIEFDV--SATPVVDACRDSGLLVLTAGK-GNVVRLVPPLIISEQELDQAVEILCKTLPV 445 (451)
Q Consensus 374 ~~~~~~~v---~g~-G~~~~~~~~~--~~~~~~~~l~~~Gv~~~~~~~-~~~iri~~~~~~t~e~i~~~l~~l~~~l~~ 445 (451)
..+..... ... ...+.|.++. ....+...|.++||.+.++.. -+.+|+++....|+||||++++.|+++.++
T Consensus 306 ~~~~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 306 NSDFYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp TCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCcccCCCHHHcCceEEEEECCCccccHHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 33321111 112 2456666642 225677778889998876532 134999999999999999999999998764
No 234
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.22 E-value=2.3e-10 Score=114.09 Aligned_cols=179 Identities=9% Similarity=-0.056 Sum_probs=109.9
Q ss_pred HHHHHHHHhhccC---CCeEEecCCHH-HHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcC
Q 013008 142 QIELAKRLVACSF---ADRVFFSNTGT-EANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYR 217 (451)
Q Consensus 142 ~~~l~~~l~~~~~---~e~v~~~~sG~-eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~ 217 (451)
...+..++.+.+| ....++++++| .++.+++.+++.... +++.||+... -|-+...++.+.|.....
T Consensus 100 e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~--------~~~~viv~r~-aHkSv~kAl~l~Gl~p~~ 170 (450)
T 3bc8_A 100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRP--------KAKYIIWPRI-DQKSCFKSMVTAGFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCT--------TCCEEEEECC-CCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhc--------CCCEEEEECC-cHHHHHHHHHHcCCeeEE
Confidence 4456666666666 33458888887 666666666674311 2566777754 788888887776542211
Q ss_pred CCCcCCCCCeeEeeCCCHHHHHHhcCC---CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCc
Q 013008 218 SPFEPVMPGVNFVEYGNIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGR 294 (451)
Q Consensus 218 ~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr 294 (451)
-...+... . .. -|+++|+++|+. +.+++|++.|.+..+|.+-+ +++|.++|++||+++++||+|.+.-+
T Consensus 171 v~~~~~~~-~--~~-id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~ 242 (450)
T 3bc8_A 171 IENVLEGD-E--LR-TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSS 242 (450)
T ss_dssp ECCEEETT-E--EE-CCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCH
T ss_pred EEeeecCc-c--CC-cCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhh
Confidence 01111011 1 11 289999999962 46788888876665555556 99999999999999999999965322
Q ss_pred ccccccccccCC-Ccceeeec--ccccCCcccccccc-cHHHHhhcc
Q 013008 295 TGYLWAHEHYGI-FPDIMTLA--KPLAGGLPIGAALV-TEKVASAIN 337 (451)
Q Consensus 295 ~G~~~~~~~~~~-~pdi~t~s--K~lg~G~~iG~v~~-~~~i~~~~~ 337 (451)
....+..+.+.. ..|.+++| |.+..-...+.+.. +++..+.+.
T Consensus 243 ~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~ 289 (450)
T 3bc8_A 243 KCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDIS 289 (450)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHH
T ss_pred hhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHH
Confidence 211111111211 47888887 76654345566654 555555553
No 235
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.17 E-value=2.3e-09 Score=105.86 Aligned_cols=272 Identities=9% Similarity=0.041 Sum_probs=152.0
Q ss_pred CCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCC-CCcCCCCcCCCCCeeEeeCC
Q 013008 155 ADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSK-EHYRSPFEPVMPGVNFVEYG 233 (451)
Q Consensus 155 ~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 233 (451)
....+++|++|.++.+++.++....+ +++++||+ ...-|-+...++.+.|. +.+..+. . ..+... -
T Consensus 134 ~~~~flVnGsTgg~lamilaa~r~~r-------pg~d~VIv-pRn~HKSv~kAliL~Gl~Pv~V~p~-~-d~~~~~---i 200 (501)
T 3hl2_A 134 VANCFVVPMATGMSLTLCFLTLRHKR-------PKAKYIIW-PRIDQKSCFKSMITAGFEPVVIENV-L-EGDELR---T 200 (501)
T ss_dssp CCEEEEESSCHHHHHHHHHHHHHHHC-------TTCCEEEE-ECCCCHHHHHHHHHTTCEEEEECEE-E-ETTEEE---E
T ss_pred CCcEEEECcHHHHHHHHHHHHcCccc-------CCCCEEEE-ecchHHHHHHHHHHcCCeEEEEeee-e-cccccC---C
Confidence 34588889888787777776654321 02477777 45567777777776653 2222110 0 011111 1
Q ss_pred CHHHHHHhcCC---CCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCCCcccccccccccCC-Ccc
Q 013008 234 NIEATRKLIQP---GKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGLGRTGYLWAHEHYGI-FPD 309 (451)
Q Consensus 234 d~~~le~~l~~---~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~~~~~~~~-~pd 309 (451)
|++.|+++|+. +.+++|+..|.+..++...+ +++|+++|++||+++++||+|...-.....+..+.+.. ..|
T Consensus 201 d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD 276 (501)
T 3hl2_A 201 DLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRID 276 (501)
T ss_dssp CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCc
Confidence 89999999972 45677777665443444344 99999999999999999999954322222111222222 489
Q ss_pred eeeec--ccccCCcccc-ccc-c-cHHHHhhccCCCccCCCCCcHHHHHHHHHHHHHhcChHHH---HH-----------
Q 013008 310 IMTLA--KPLAGGLPIG-AAL-V-TEKVASAINYGDHGSTFAGSPLVCNAAIAVLDKISNPAFL---AS----------- 370 (451)
Q Consensus 310 i~t~s--K~lg~G~~iG-~v~-~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~---~~----------- 370 (451)
+++.| |.+- .|+| +++ . ++++++.+.... .++.+++|.. ..+.++..+-.+.+. ++
T Consensus 277 ~vVqS~HK~ll--vpIGG~ii~~~d~e~l~~~~~~y-PGr~S~Spsl--dl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~ 351 (501)
T 3hl2_A 277 AFVQSLDKNFM--VPVGGAIIAGFNDSFIQEISKMY-PGRASASPSL--DVLITLLSLGSNGYKKLLKERKEMFSYLSNQ 351 (501)
T ss_dssp EEEEEHHHHHC--CCSSCEEEEESCHHHHHHHHHTS-CSCBCSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccce--eecCceEEEeCCHHHHHHHHHhC-CCCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888 5542 2333 233 3 567777664322 2334444433 222223222222221 11
Q ss_pred ---HHhCCC-CcceecccceeEEEEecC-------ChHHHHHHHHHCCce---eeecC------------C--------C
Q 013008 371 ---KLARNP-HVKDVRGLGLIIGIEFDV-------SATPVVDACRDSGLL---VLTAG------------K--------G 416 (451)
Q Consensus 371 ---~~~~~~-~~~~v~g~G~~~~~~~~~-------~~~~~~~~l~~~Gv~---~~~~~------------~--------~ 416 (451)
+...+. .+-..+.--.-+++.++. ....+-..|..++|- +.+.+ . -
T Consensus 352 L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~ 431 (501)
T 3hl2_A 352 IKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPC 431 (501)
T ss_dssp HHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSS
T ss_pred HHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCc
Confidence 222222 111222222233444421 134667778877553 22221 0 1
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 013008 417 NVVRLVPPLIISEQELDQAVEILCKTLPVLDS 448 (451)
Q Consensus 417 ~~iri~~~~~~t~e~i~~~l~~l~~~l~~~~~ 448 (451)
.++-+.....++++|+|.++++|++++.+++.
T Consensus 432 ~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 432 AYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35777788899999999999999999988764
No 236
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=98.86 E-value=1.3e-07 Score=93.02 Aligned_cols=305 Identities=16% Similarity=0.143 Sum_probs=155.5
Q ss_pred CCHHHHHHHHHHHhh-cccccC---CC-CCHH---HHHHHH-HHhhccCCCeE-----EecCCHHHHHHHHHHHHHHHhh
Q 013008 115 GDADWIKAVVDQANV-LTHVSN---MY-YSIP---QIELAK-RLVACSFADRV-----FFSNTGTEANEAAIKFARKFQR 180 (451)
Q Consensus 115 ~~p~v~~a~~~~~~~-~~~~~~---~~-~~~~---~~~l~~-~l~~~~~~e~v-----~~~~sG~eA~~~al~~a~~~~~ 180 (451)
..|.|.+|+-..+.. +.-++. +| ..+. .+.|+. +..+.++.+.. +=-.||+.||..++.++.
T Consensus 66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All---- 141 (490)
T 3ou5_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL---- 141 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC----
T ss_pred CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHc----
Confidence 567777776655432 221111 11 1221 333433 34455664421 234589999999999776
Q ss_pred hcCCCCCCCCceEEEEcCCccCChhhh-------hhccCCCCcCCCCcCCCCCeeEeeCCCHHHHHHhcCCCCeEEEEEc
Q 013008 181 HSNPDSKEPATEFVSFTNSFHGRTMGA-------LALTSKEHYRSPFEPVMPGVNFVEYGNIEATRKLIQPGKTAAVFVE 253 (451)
Q Consensus 181 ~~~~~~~~~~~~ii~~~~~yhg~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~aavi~e 253 (451)
.|+|+|+..+-.--|+..-. ...++.. +.....+..+....+ |.+.++++....++++||+-
T Consensus 142 -------~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~-~~~~~Y~vd~~t~~I---Dyd~~~~~A~~~kPklIi~G 210 (490)
T 3ou5_A 142 -------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF-FESMPYKLNPKTGLI---DYNQLALTARLFRPRLIIAG 210 (490)
T ss_dssp -------C-CCCEECBC-----------------------------CBCEETTTTEE---CHHHHHHHHHHHCCSEEEEC
T ss_pred -------CCCCEEEecccCCCCcccccccCCCccccccccc-ccccccccCCCCCcc---cHHHHHHHHhhcCCCeEEEC
Confidence 27999999876654443221 1112111 110000111111112 78888888775577888886
Q ss_pred cccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc-cCCCcccccccccccCCCcceeeec--ccccCCcccccccccH
Q 013008 254 PIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ-CGLGRTGYLWAHEHYGIFPDIMTLA--KPLAGGLPIGAALVTE 330 (451)
Q Consensus 254 p~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~-tg~gr~G~~~~~~~~~~~pdi~t~s--K~lg~G~~iG~v~~~~ 330 (451)
...-.- ..+ +++++++|++.|++|++|=+| +|+--.|. +.. -+. ..|++|.+ |+|.| -+.|.|++++
T Consensus 211 ~SaY~r--~id----~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~-~ps-P~~-~ADvVTtTTHKTLrG-PrGG~Il~~~ 280 (490)
T 3ou5_A 211 TSAYAR--LID----YARMREVCDEVKAHLLADMAHISGLVAAKV-IPS-PFK-HADIVTTTTHKTLRG-ARSGLIFYRK 280 (490)
T ss_dssp CSSCCS--CCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTS-SCC-GGG-TCSEEEEESSSTTCS-CSCEEEEEEC
T ss_pred CccCcc--ccC----HHHHHHHHhhcccEEEechhhhhhhhcccc-cCC-ccc-cceEEeccccccccC-CCceEEEecc
Confidence 542221 233 899999999999999999998 45522232 111 112 26888766 88864 4667777765
Q ss_pred ---------------HHHhhccCCCccCCCCCcHHHHHHHHHH-HHHhcChHH---HHH-------HHhCCC--Ccceec
Q 013008 331 ---------------KVASAINYGDHGSTFAGSPLVCNAAIAV-LDKISNPAF---LAS-------KLARNP--HVKDVR 382 (451)
Q Consensus 331 ---------------~i~~~~~~~~~~~t~~~~~~~~aaa~aa-l~~~~~~~~---~~~-------~~~~~~--~~~~v~ 382 (451)
++.+.+....+.+..+++-+-..||.++ +.....+++ .++ +.+.+. .+.-+.
T Consensus 281 ~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvs 360 (490)
T 3ou5_A 281 GVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVS 360 (490)
T ss_dssp SEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGG
T ss_pred ccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeec
Confidence 2333333222333344433333333322 332222222 222 221110 122122
Q ss_pred c--cceeEEEEec---CChHHHHHHHHHCCceeee----cCC----CCEEEEeCC----CCCCHHHHHHHHHHHHHHHH
Q 013008 383 G--LGLIIGIEFD---VSATPVVDACRDSGLLVLT----AGK----GNVVRLVPP----LIISEQELDQAVEILCKTLP 444 (451)
Q Consensus 383 g--~G~~~~~~~~---~~~~~~~~~l~~~Gv~~~~----~~~----~~~iri~~~----~~~t~e~i~~~l~~l~~~l~ 444 (451)
| ...++.+++. ....+..+.|-+.||.+.. ... .+-|||-.+ ....++|++++.+.|.+++.
T Consensus 361 GgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 361 GGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp GSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 2 1345667772 3456666777778998752 211 245898655 34678999999999988774
No 237
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=61.67 E-value=13 Score=30.45 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=35.8
Q ss_pred CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHH-HHHHHhCCE-EEEecccc
Q 013008 234 NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLR-DACDDAGAL-LVFDEVQC 290 (451)
Q Consensus 234 d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~-~l~~~~g~l-lI~DEv~t 290 (451)
+.+.|.++++..++..|+++-+.++.|..-...+..++.. .+++++++. ..+||-+|
T Consensus 43 ~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 43 GLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp CHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 6899999999878888888744444444322222223333 455566765 45699886
No 238
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=55.78 E-value=13 Score=32.21 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=30.2
Q ss_pred CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEE
Q 013008 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (451)
Q Consensus 244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (451)
.-..++||||-..+..|.... +.++.+++++||+.+|.
T Consensus 157 Gl~Pa~vicEi~~~~dG~mar----~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 157 GLQPAGVICELVRDEDGLMMR----LDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp TSCSBEEEEEBBCTTTCCBCB----HHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEeECCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 446899999987445566566 89999999999998885
No 239
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=50.79 E-value=20 Score=31.06 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=29.2
Q ss_pred CCCeEEEEEccc-cCCCCccccCHHHHHHHHHHHHHhCCEEEE
Q 013008 244 PGKTAAVFVEPI-QGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (451)
Q Consensus 244 ~~~~aavi~ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (451)
.-.+++||||-+ .+..|...- +.++.+++++||+.+|.
T Consensus 156 Gl~Pa~vicEiv~~~~dG~mar----~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 156 GLQPAGAICEIVSQKDEGSMAH----TDELRVFADEHGLALIT 194 (206)
T ss_dssp TSCSBEEEEEBBCSSSTTSBCC----HHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEEEeeeCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 446899999983 334565555 88999999999999985
No 240
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=43.50 E-value=38 Score=33.15 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=38.9
Q ss_pred HHHHHhcCCCCeEEEEEccccCC-----CCc---------------cccCHHHHHHHHHHHHHhCCEEEEeccc
Q 013008 236 EATRKLIQPGKTAAVFVEPIQGE-----GGI---------------YSATKEFLQFLRDACDDAGALLVFDEVQ 289 (451)
Q Consensus 236 ~~le~~l~~~~~aavi~ep~~~~-----~G~---------------~~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (451)
+++++.|++-.+.+|.+.|++-+ +|. ..-+++.|++|++-|+++|+-||+|=|+
T Consensus 26 ~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy~i~~~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 99 (496)
T 4gqr_A 26 LECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSYKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVI 99 (496)
T ss_dssp HHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCceeCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 34555666666888888886421 110 1125778999999999999999999994
No 241
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=43.14 E-value=28 Score=30.39 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=29.0
Q ss_pred CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEE
Q 013008 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (451)
Q Consensus 244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (451)
.-.+++||||-.+ ..|.... +.++.+++++||+.+|.
T Consensus 165 Gl~Pa~vicEi~~-~dG~mar----~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 165 GFKPAGVLCELTN-DDGTMAR----APECIEFANKHNMALVT 201 (217)
T ss_dssp TSCSCEEEEEBBC-TTSSBCC----HHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEEeC-CCCCccC----HHHHHHHHHHcCCCEEE
Confidence 4467899999774 4455555 88999999999999885
No 242
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=42.87 E-value=28 Score=30.65 Aligned_cols=37 Identities=5% Similarity=-0.014 Sum_probs=29.9
Q ss_pred CCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEE
Q 013008 244 PGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVF 285 (451)
Q Consensus 244 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (451)
.-..++||||-++-. |.... ++++.+++++||+.+|.
T Consensus 176 Gl~Pa~VicEi~~dd-G~mar----~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 176 NLVPITTICEMMGDD-GNAMS----KNETKRYAEKHNLIYLS 212 (227)
T ss_dssp TSCSEEEEEEEBCTT-SSBCC----HHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEEEEeCCC-CCcCC----HHHHHHHHHHcCCcEEE
Confidence 446899999988654 55555 88999999999999885
No 243
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=40.83 E-value=75 Score=22.76 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (451)
Q Consensus 235 ~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~ 292 (451)
.....+.++.++...|++-.. .+++....+..+|++++++++.-.-...+
T Consensus 16 ~~~v~kai~~gkaklViiA~D--------~~~~~~~~i~~lc~~~~Ip~~~v~sk~eL 65 (82)
T 3v7e_A 16 TKQTVKALKRGSVKEVVVAKD--------ADPILTSSVVSLAEDQGISVSMVESMKKL 65 (82)
T ss_dssp HHHHHHHHTTTCEEEEEEETT--------SCHHHHHHHHHHHHHHTCCEEEESCHHHH
T ss_pred HHHHHHHHHcCCeeEEEEeCC--------CCHHHHHHHHHHHHHcCCCEEEECCHHHH
Confidence 456677777667777776432 13367899999999999999976544333
No 244
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=35.45 E-value=21 Score=26.04 Aligned_cols=21 Identities=5% Similarity=-0.189 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCEEEEeccc
Q 013008 269 LQFLRDACDDAGALLVFDEVQ 289 (451)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~ 289 (451)
-.+|++++++||++++.|.--
T Consensus 29 A~~I~~~A~e~~VPi~e~~~L 49 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIPL 49 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHH
Confidence 678999999999999999864
No 245
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=34.45 E-value=47 Score=29.27 Aligned_cols=38 Identities=11% Similarity=-0.107 Sum_probs=29.7
Q ss_pred CCCeEEEEEccccCC----------CCccccCHHHHHHHHHHHHHhCCEEEE
Q 013008 244 PGKTAAVFVEPIQGE----------GGIYSATKEFLQFLRDACDDAGALLVF 285 (451)
Q Consensus 244 ~~~~aavi~ep~~~~----------~G~~~~~~~~l~~l~~l~~~~g~llI~ 285 (451)
.-..++||||-++-. .|...- +.++.+++++||+.+|.
T Consensus 165 Gl~PagVicEi~~~~~~~~~~~~~~dG~mar----~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 165 GKRPVAVISEIVDDGQEVEGRAVRAAPGMLR----GDECVAFARRWGLKVCT 212 (233)
T ss_dssp TCCSBEEEEEBEECCEECTTSSCEESCEECC----HHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEeCCCcccccccccCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 446899999977541 455555 88999999999999885
No 246
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=33.16 E-value=2.5e+02 Score=26.16 Aligned_cols=48 Identities=13% Similarity=0.238 Sum_probs=29.7
Q ss_pred cCCCCeEEEEEccccCCCC--cc---cc-------C-----HHHHHHHHHHHHHhCCEEE-Eeccc
Q 013008 242 IQPGKTAAVFVEPIQGEGG--IY---SA-------T-----KEFLQFLRDACDDAGALLV-FDEVQ 289 (451)
Q Consensus 242 l~~~~~aavi~ep~~~~~G--~~---~~-------~-----~~~l~~l~~l~~~~g~llI-~DEv~ 289 (451)
++...+..|++|+++..-. .+ +. . ..+|..|..+++++|+.+| +..|+
T Consensus 107 i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 107 IERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp CCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred hhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 5566799999999876521 00 00 0 1346667778999999765 44443
No 247
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=30.27 E-value=28 Score=26.17 Aligned_cols=22 Identities=5% Similarity=-0.028 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCEEEEeccc
Q 013008 268 FLQFLRDACDDAGALLVFDEVQ 289 (451)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~ 289 (451)
.-++|++++++||++++.|.--
T Consensus 43 ~A~~I~~~A~e~gVPi~e~~~L 64 (97)
T 3t7y_A 43 RAKRIIAEAEKYGVPIMRNVPL 64 (97)
T ss_dssp HHHHHHHHHHHHTCCEEECHHH
T ss_pred HHHHHHHHHHHcCCeEEECHHH
Confidence 3678999999999999999864
No 248
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=29.56 E-value=30 Score=25.84 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCEEEEeccc
Q 013008 268 FLQFLRDACDDAGALLVFDEVQ 289 (451)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~ 289 (451)
.-.+|+++++++|++++.|...
T Consensus 28 ~A~~I~e~A~e~gVPi~e~~~L 49 (93)
T 2vt1_B 28 CALAVRKYANEVGIPTVRDVKL 49 (93)
T ss_dssp HHHHHHHHHHHTTCCEEECHHH
T ss_pred HHHHHHHHHHHcCCCEEECHHH
Confidence 3678999999999999999764
No 249
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=29.43 E-value=48 Score=31.82 Aligned_cols=45 Identities=20% Similarity=0.136 Sum_probs=33.2
Q ss_pred CeEEEEEccccCCC---Cc-----------cccCHHHHHHHHHHHHHhCCEEEEecccc
Q 013008 246 KTAAVFVEPIQGEG---GI-----------YSATKEFLQFLRDACDDAGALLVFDEVQC 290 (451)
Q Consensus 246 ~~aavi~ep~~~~~---G~-----------~~~~~~~l~~l~~l~~~~g~llI~DEv~t 290 (451)
.+.+|.+.|++... |- ..-+.+.+++|++-|+++|+-||.|=|..
T Consensus 34 Gv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~N 92 (405)
T 1ht6_A 34 GVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVIN 92 (405)
T ss_dssp TCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 56788888865432 11 11245789999999999999999999964
No 250
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=28.78 E-value=31 Score=26.00 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCEEEEeccc
Q 013008 268 FLQFLRDACDDAGALLVFDEVQ 289 (451)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~ 289 (451)
.-.+|++++++||++++.|...
T Consensus 28 ~A~~I~e~A~e~gVPi~e~~~L 49 (98)
T 3c01_E 28 RALAVRAYAEKVGVPVIVDIKL 49 (98)
T ss_dssp HHHHHHHHHHHHTCCEEECHHH
T ss_pred HHHHHHHHHHHcCCCeecCHHH
Confidence 3678999999999999999764
No 251
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=26.91 E-value=82 Score=30.89 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=35.8
Q ss_pred cCCCCeEEEEEccccCCCCc--------c----------ccCHHHHHHHHHHHHHhCCEEEEecccc
Q 013008 242 IQPGKTAAVFVEPIQGEGGI--------Y----------SATKEFLQFLRDACDDAGALLVFDEVQC 290 (451)
Q Consensus 242 l~~~~~aavi~ep~~~~~G~--------~----------~~~~~~l~~l~~l~~~~g~llI~DEv~t 290 (451)
|++-.+.+|.+.|++..... . .-+.+.+++|++-|+++|+-||+|=|+-
T Consensus 32 L~~LGv~~I~l~Pi~~~~~~~~~~~~~gYd~~dy~idp~~Gt~~d~~~lv~~~h~~Gi~VilD~V~N 98 (471)
T 1jae_A 32 LQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDMTRRCNDAGVRIYVDAVIN 98 (471)
T ss_dssp TTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCSCSEETTEEHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHcCCCEEEeCccccccCCCCCCcccccccccccccCCCCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 34446888888887554321 0 1246789999999999999999999953
No 252
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=26.83 E-value=3.5e+02 Score=24.34 Aligned_cols=101 Identities=11% Similarity=0.119 Sum_probs=59.4
Q ss_pred CCCeEEecCCHHHHHHHHHHHHHHHhhhcCCCCCCCCceEEEEcCCccCChhhhhhccCCCCcCCCCcCCCCCeeEeeCC
Q 013008 154 FADRVFFSNTGTEANEAAIKFARKFQRHSNPDSKEPATEFVSFTNSFHGRTMGALALTSKEHYRSPFEPVMPGVNFVEYG 233 (451)
Q Consensus 154 ~~e~v~~~~sG~eA~~~al~~a~~~~~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (451)
|.+.++.+.+..+....++.++..+.+ ....+...-+.|.+.... + ...
T Consensus 30 gV~~~v~~g~~~~~~~~~~~la~~~~~---------~~~~v~~~~GiHP~~~~~------------~----------~~~ 78 (287)
T 3rcm_A 30 GVTQMLLTGTSLAVSEQALELCQQLDA---------SGAHLFATAGVHPHDAKA------------W----------DTD 78 (287)
T ss_dssp TEEEEEECCCSHHHHHHHHHHHHHHCT---------TSSSEEEEECCCGGGGGG------------C----------CTT
T ss_pred CCeEEEEecCCHHHHHHHHHHHHhCCC---------CCceEEEEEEECcCcccc------------C----------CHH
Confidence 566777777777778888888887621 111244445677653210 0 012
Q ss_pred CHHHHHHhcCCCCeEEE--E-EccccCCCCccccCHHHHHHHHHHHHHhCCEEEEe
Q 013008 234 NIEATRKLIQPGKTAAV--F-VEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD 286 (451)
Q Consensus 234 d~~~le~~l~~~~~aav--i-~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D 286 (451)
+++.|+++++..++.+| + ++-.. .........+.+++..++|+++|.+|++=
T Consensus 79 ~~~~l~~l~~~~~vvaIGEiGLD~~~-~~~~~~~Q~~~F~~ql~lA~e~~lPv~iH 133 (287)
T 3rcm_A 79 SERQLRLLLSEPRVRAVGECGLDFNR-DFSPRPLQEKALEAQLTLAAQLRLPVFLH 133 (287)
T ss_dssp HHHHHHHHHTSTTEEEEEEEEEETTT-CSSCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhcCCCeEEEEEeeeCCCc-ccCcHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 57888888875555443 1 22211 11111223567888999999999998863
No 253
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=26.49 E-value=45 Score=29.70 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=30.5
Q ss_pred HHHHHHhcCCCCeEEEEE-ccccC---CCCccccCHHH---HHHHHHHHHHhCCEEEEec
Q 013008 235 IEATRKLIQPGKTAAVFV-EPIQG---EGGIYSATKEF---LQFLRDACDDAGALLVFDE 287 (451)
Q Consensus 235 ~~~le~~l~~~~~aavi~-ep~~~---~~G~~~~~~~~---l~~l~~l~~~~g~llI~DE 287 (451)
++.++++++. .+..|.+ ++..+ -.|. ..+.++ .++++++|++||+.||+++
T Consensus 46 ~~~~~~al~~-Gv~~vqlR~K~~~~~~~~~~-l~~~~~~~~a~~l~~l~~~~~~~liInd 103 (243)
T 3o63_A 46 AQFAEAALAG-GVDIIQLRDKGSPGELRFGP-LQARDELAACEILADAAHRYGALFAVND 103 (243)
T ss_dssp HHHHHHHHHT-TCSEEEECCTTCHHHHHHCS-CCHHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHC-CCCEEEEccCCCCccccccC-CCHHHHHHHHHHHHHHHHhhCCEEEEeC
Confidence 4677788765 3556655 44311 0010 122333 4779999999999888854
No 254
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=24.25 E-value=90 Score=27.03 Aligned_cols=39 Identities=15% Similarity=0.287 Sum_probs=26.2
Q ss_pred CeEEEEEccccCC---CCc-cccCHHHHHHHHHHHHHhCCEEE
Q 013008 246 KTAAVFVEPIQGE---GGI-YSATKEFLQFLRDACDDAGALLV 284 (451)
Q Consensus 246 ~~aavi~ep~~~~---~G~-~~~~~~~l~~l~~l~~~~g~llI 284 (451)
....|++.|.... .|. .....+|-+.++++|+++|+.+|
T Consensus 125 g~~vil~tp~p~~~~~~~~~~~~~~~y~~~~~~vA~~~~v~~i 167 (233)
T 1k7c_A 125 GAKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYV 167 (233)
T ss_dssp TCEEEEECCCCCCTTTTSSCCCCCCHHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCccccCCCccccchHHHHHHHHHHHHHhCCeEE
Confidence 4567777775322 122 12344678899999999998877
No 255
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=23.07 E-value=69 Score=32.24 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=39.1
Q ss_pred CHHHHHHhcC---CCCeEEEEEccccCCCCc--------------cccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008 234 NIEATRKLIQ---PGKTAAVFVEPIQGEGGI--------------YSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (451)
Q Consensus 234 d~~~le~~l~---~~~~aavi~ep~~~~~G~--------------~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~ 292 (451)
|+..+.+.|. .-.+-+|.+.|++..++. ..-+.+.+++|++-|+++|+-||.|=|..-.
T Consensus 30 dl~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NHt 105 (557)
T 1zja_A 30 DFKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHS 105 (557)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEecccc
Confidence 5555444332 224678888887543211 0124678999999999999999999996433
No 256
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=22.93 E-value=1.4e+02 Score=23.65 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=29.9
Q ss_pred HHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEe
Q 013008 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFD 286 (451)
Q Consensus 236 ~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D 286 (451)
..+.+.++.++...|++-.. ..+.+..+.|..+|++++++++.-
T Consensus 47 ~~v~kal~~gkaklViiA~D-------~~~~~~~~~l~~lc~~~~IP~~~v 90 (135)
T 2aif_A 47 NEATKALNRGIAEIVLLAAD-------AEPLEILLHLPLVCEDKNTPYVFV 90 (135)
T ss_dssp HHHHHHHHTTCEEEEEEETT-------CSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCCeEEEEecC-------CChHHHHhHHHHHHHhcCCcEEEE
Confidence 45666666666666666432 234455689999999999988743
No 257
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=22.19 E-value=1.1e+02 Score=28.02 Aligned_cols=52 Identities=6% Similarity=0.065 Sum_probs=33.2
Q ss_pred CHHHHHHhcC----CCCeE--EEEEccccCCCCccc-cC-----HHHHHHHHHHHHHhCCEEEE
Q 013008 234 NIEATRKLIQ----PGKTA--AVFVEPIQGEGGIYS-AT-----KEFLQFLRDACDDAGALLVF 285 (451)
Q Consensus 234 d~~~le~~l~----~~~~a--avi~ep~~~~~G~~~-~~-----~~~l~~l~~l~~~~g~llI~ 285 (451)
+++.+...+. ...+. .|++|+++....... .. .+.++.|..+|+++|+.+|+
T Consensus 163 ~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~ 226 (315)
T 3bh0_A 163 SVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIA 226 (315)
T ss_dssp BHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 4566544443 44567 999999876532111 12 24567889999999987775
No 258
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=21.91 E-value=78 Score=24.63 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccc
Q 013008 236 EATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQ 289 (451)
Q Consensus 236 ~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (451)
....+.|+.++...||+-.. +++.+....|..+|++++++++.-.-.
T Consensus 26 ~~v~kai~~gkakLViiA~D-------~~~~~~~~~l~~lc~~~~VP~~~v~sk 72 (121)
T 2lbw_A 26 KEVVKALRKGEKGLVVIAGD-------IWPADVISHIPVLCEDHSVPYIFIPSK 72 (121)
T ss_dssp HHHHHHHHHSCCCEEEECTT-------CSCTTHHHHHHHHHHHTCCCEEECCCH
T ss_pred HHHHHHHHcCCceEEEEeCC-------CCHHHHHHHHHHHHHhcCCcEEEECCH
Confidence 44555665455666666432 223345788889999999999765443
No 259
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=21.81 E-value=37 Score=18.04 Aligned_cols=15 Identities=33% Similarity=0.756 Sum_probs=12.3
Q ss_pred eecccEEEecCCCEE
Q 013008 86 SGKGCKLYDAEGREY 100 (451)
Q Consensus 86 ~~~G~~l~d~~G~~~ 100 (451)
+.+|+++|-+-|.+|
T Consensus 11 r~kgarlwyvggtq~ 25 (26)
T 1gff_3 11 KSKGARLWYVGGTQY 25 (26)
T ss_pred CCCceEEEEecceec
Confidence 688999998887765
No 260
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=21.80 E-value=58 Score=30.27 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhCCEEEEec
Q 013008 266 KEFLQFLRDACDDAGALLVFDE 287 (451)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DE 287 (451)
.+.++++.++|+++|+.+|+|=
T Consensus 104 ~~~ld~~v~~a~~~Gi~VilD~ 125 (327)
T 3pzt_A 104 KNKVKEAVEAAKELGIYVIIDW 125 (327)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEe
Confidence 3668889999999999999883
No 261
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=21.61 E-value=81 Score=24.34 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008 235 IEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (451)
Q Consensus 235 ~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~ 292 (451)
.....++++.++...|++-.. +.+.+....|..+|+++|++++.-.-...+
T Consensus 30 ~~~v~kaI~~gka~LVvIA~D-------~~p~~i~~~l~~lC~~~~VP~~~v~sk~~L 80 (113)
T 3jyw_G 30 LNHVVALIENKKAKLVLIAND-------VDPIELVVFLPALCKKMGVPYAIVKGKARL 80 (113)
T ss_dssp HHHHHHTTTTTCCSEEEECSC-------CSSHHHHTTHHHHHHHTTCCCEECSCSTTT
T ss_pred HHHHHHHHHcCCceEEEEeCC-------CCHHHHHHHHHHHHHHcCCCEEEECCHHHH
Confidence 567778888666666666432 223455677889999999988865444334
No 262
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=21.18 E-value=2.8e+02 Score=24.05 Aligned_cols=51 Identities=6% Similarity=0.098 Sum_probs=35.4
Q ss_pred CHHHHHHhcCCCCeEEEEEccccCCCCccccCHHHHHHHHHHHHHhCCEEEEeccccCC
Q 013008 234 NIEATRKLIQPGKTAAVFVEPIQGEGGIYSATKEFLQFLRDACDDAGALLVFDEVQCGL 292 (451)
Q Consensus 234 d~~~le~~l~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~ 292 (451)
+.+++.+.+. .+..+|++|=.| ..+++.++.+.+++ ..|+.+|+=-.-+.|
T Consensus 90 ~~~di~~~i~-~~~dvV~IDEaQ------Ff~~~~v~~l~~la-~~gi~Vi~~GLd~DF 140 (219)
T 3e2i_A 90 KASEIMTHDL-TNVDVIGIDEVQ------FFDDEIVSIVEKLS-ADGHRVIVAGLDMDF 140 (219)
T ss_dssp SGGGGGGSCC-TTCSEEEECCGG------GSCTHHHHHHHHHH-HTTCEEEEEEESBCT
T ss_pred CHHHHHHHHh-cCCCEEEEechh------cCCHHHHHHHHHHH-HCCCEEEEeeccccc
Confidence 4444444443 356788898776 35667888899998 689999987655555
No 263
>2afr_A Cobalamin biosynthesis precorrin isomerase; 2.30A {Leptospira interrogans} PDB: 2afv_A*
Probab=21.14 E-value=78 Score=27.83 Aligned_cols=50 Identities=26% Similarity=0.344 Sum_probs=32.8
Q ss_pred CCCcceeeecccccCCccccccccc---HHHHhh-------ccCCCccCCCCCcHHHHHHHHHHHHH
Q 013008 305 GIFPDIMTLAKPLAGGLPIGAALVT---EKVASA-------INYGDHGSTFAGSPLVCNAAIAVLDK 361 (451)
Q Consensus 305 ~~~pdi~t~sK~lg~G~~iG~v~~~---~~i~~~-------~~~~~~~~t~~~~~~~~aaa~aal~~ 361 (451)
++.|.+++ |+|+|||.+. +.+++. +......++.+|++++.++..+.+..
T Consensus 157 ~~~PalVI-------G~PVGFVgAaESKe~L~~~~~~~~~~vP~I~~~GrkGGS~vAaAivNALl~~ 216 (231)
T 2afr_A 157 GIKPALIV-------GVPVGFVSAKESKESILKLEYYNVTSIPYILTMGRKGGSTIAVAILHALLLL 216 (231)
T ss_dssp CCCCSEEE-------ECCCCSSSHHHHHHHHHHHHHTTSCCCCEEEECSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCcEEE-------EeCCCcccHHHHHHHHHhcccccCCCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35777766 7899999763 334443 11123456788999988888777744
No 264
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}
Probab=20.77 E-value=63 Score=33.62 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=38.9
Q ss_pred CHHHHHHhcC---CCCeEEEEEccccCCCCc-------------cccCHHHHHHHHHHHHHhCCEEEEeccc
Q 013008 234 NIEATRKLIQ---PGKTAAVFVEPIQGEGGI-------------YSATKEFLQFLRDACDDAGALLVFDEVQ 289 (451)
Q Consensus 234 d~~~le~~l~---~~~~aavi~ep~~~~~G~-------------~~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (451)
|+..+.+.|. .-.+-+|.+.|++..+.. ..-+.+.+++|++-|+++|+-||.|=|.
T Consensus 263 dl~Gi~~kLdyLk~LGvt~IwL~Pi~~s~~~~GYd~~Dy~~idp~~Gt~~df~~Lv~~aH~~GikVilD~V~ 334 (696)
T 4aee_A 263 DLAGIMKHIDHLEDLGVETIYLTPIFSSTSYHRYDTIDYKSIDKYLGTMEDFEKLVQVLHSRKIKIVLDITM 334 (696)
T ss_dssp CHHHHHTTHHHHHHHTCCEEEECCCEEESSSSCCSEEEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEeccc
Confidence 5555554443 224778888887543210 1225678999999999999999999994
No 265
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Probab=20.20 E-value=66 Score=29.38 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhCCEEEEecc
Q 013008 266 KEFLQFLRDACDDAGALLVFDEV 288 (451)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv 288 (451)
.+.++++.+.|+++|+.+|+|=-
T Consensus 79 ~~~ld~~v~~a~~~Gi~Vild~H 101 (303)
T 7a3h_A 79 KEKVKEAVEAAIDLDIYVIIDWH 101 (303)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEec
Confidence 36688899999999999998743
No 266
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=20.12 E-value=65 Score=29.14 Aligned_cols=22 Identities=14% Similarity=-0.035 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhCCEEEEecc
Q 013008 267 EFLQFLRDACDDAGALLVFDEV 288 (451)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv 288 (451)
+.++.+.++|+++|+.+|.|--
T Consensus 90 ~~~d~~~~~a~~~Gi~vil~~~ 111 (351)
T 3vup_A 90 DDMKDLLDTAKKYNILVFPCLW 111 (351)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEec
Confidence 3478899999999999998864
Done!