BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013010
         (451 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|449464228|ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Cucumis sativus]
 gi|449518241|ref|XP_004166151.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Cucumis sativus]
          Length = 445

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/430 (72%), Positives = 365/430 (84%), Gaps = 2/430 (0%)

Query: 14  LVQQVLPLMLKNVPFDAKL--AASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTG 71
           LV Q+L  MLKN PFD  +  AAST+ T   ++ +SV+DVL+S+PRFFFQS RSIG Q G
Sbjct: 14  LVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRFFFQSARSIGTQKG 73

Query: 72  FRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHN 131
           FRHRTPL+QR LK+EAY   NNVLVLGP A+RDP K  LGLNKA EF++WVE  F F H+
Sbjct: 74  FRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEFFYWVETHFGFQHD 133

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           E+TC+EM  V ARGN + GLWDFLK+MSRR NG LVTT+++TCLIKVLGEEGLVNEAL  
Sbjct: 134 EITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKVLGEEGLVNEALTA 193

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           FYRMKQF C+PDVYAYN VIN LCR+GNF KARFLLEQMELPGFRCPPD++TYTILISSY
Sbjct: 194 FYRMKQFHCKPDVYAYNTVINVLCRIGNFKKARFLLEQMELPGFRCPPDIFTYTILISSY 253

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CKY +QTGCRKAIRRR+WEANHLFR+MLFKGF PDVV YN LIDGCCKTYRI+RALELF+
Sbjct: 254 CKYSLQTGCRKAIRRRLWEANHLFRIMLFKGFSPDVVTYNSLIDGCCKTYRIQRALELFE 313

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
           DM+K+GC PNR+TYNSFIRYYS VNEID+AI+M+R MQ +NHG+ TSSSYTPIIHALCE 
Sbjct: 314 DMSKRGCTPNRLTYNSFIRYYSAVNEIDQAIKMLRMMQKMNHGIATSSSYTPIIHALCEG 373

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQV 431
           G+V+EARDFL EL++ GSVPREYTY+LVC+ LN+A + SLLD+ + +RIR GIE R+R+V
Sbjct: 374 GKVIEARDFLLELLEEGSVPREYTYQLVCNLLNSAGKASLLDENVHERIRHGIENRYREV 433

Query: 432 MKVKPIMKHK 441
            KVK IM  K
Sbjct: 434 KKVKLIMSRK 443


>gi|225456224|ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Vitis vinifera]
          Length = 432

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/441 (69%), Positives = 359/441 (81%), Gaps = 12/441 (2%)

Query: 1   MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
           MI SKP     + LV+QVL  M++N P DA    S  +   P+T +SV++VL+SIPR FF
Sbjct: 1   MIASKPRYHHRSSLVKQVLAAMVQNCPLDASPNKSCNQ---PWTTDSVSEVLRSIPRLFF 57

Query: 61  QSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYH 120
           QSPRSIGRQ GFRHR+PL+QR L +E               YRDP KV LG+ KA EFY 
Sbjct: 58  QSPRSIGRQKGFRHRSPLKQRNLYQEPNKFHR---------YRDPHKVKLGVEKAMEFYS 108

Query: 121 WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG 180
           WVE  F F HNEMTC+EMG V ARGN +K LW+FL +M+R+G   +VTT+++TCL+KVLG
Sbjct: 109 WVETQFGFSHNEMTCREMGCVLARGNRLKVLWEFLHEMARKGGNGVVTTATITCLMKVLG 168

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           EEGL N+ALA FYRMKQF C+PDVYAYN +I ALCRVGNF KARFLLEQMELPGFRCPPD
Sbjct: 169 EEGLANQALAAFYRMKQFHCKPDVYAYNTIIYALCRVGNFRKARFLLEQMELPGFRCPPD 228

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
            +TYTILI SYCKY +QTGCRKA+RRR+WEANHLFR+MLFKGFVPDVV YNCLIDGCCKT
Sbjct: 229 SFTYTILIGSYCKYSLQTGCRKAVRRRLWEANHLFRIMLFKGFVPDVVTYNCLIDGCCKT 288

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
           YRIERALELFDDMNK+GC+PNRVTYNSFIRYYS VNEIDKA++M+ KM+ +NHG+PT+SS
Sbjct: 289 YRIERALELFDDMNKRGCVPNRVTYNSFIRYYSAVNEIDKAVDMLCKMKEMNHGIPTTSS 348

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
           YTPIIHALCE GR+LEARDFL ELVDGGSVPREYTYK+VCD+L +A E ++L D LR RI
Sbjct: 349 YTPIIHALCETGRILEARDFLIELVDGGSVPREYTYKVVCDSLRSAGEANMLGDELRGRI 408

Query: 421 RDGIEYRFRQVMKVKPIMKHK 441
            +GIE R++QVMKVK IM H+
Sbjct: 409 ENGIENRYKQVMKVKLIMTHR 429


>gi|255558614|ref|XP_002520332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540551|gb|EEF42118.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 441

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/441 (68%), Positives = 367/441 (83%), Gaps = 5/441 (1%)

Query: 6   PLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRS 65
           PL   +T L+ QV+ LM+++ PFD +LA+STT +     +  ++DVL+SIPRFFFQS RS
Sbjct: 2   PLKPINTNLINQVISLMIQHRPFDIQLASSTTTSLLSSNL--ISDVLRSIPRFFFQSTRS 59

Query: 66  IGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERF 125
           +GRQ+  RHR+PL+QR LK+E +   N +L+LGPAAY+DP++V LG+ KA EF++WVE  
Sbjct: 60  VGRQSTTRHRSPLKQRSLKQETHKHNNKLLILGPAAYKDPKRVKLGVFKAMEFFYWVETN 119

Query: 126 FDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRR---GNGELVTTSSVTCLIKVLGEE 182
            DF H E TC+EMG V AR N +  LW+FL++M++R      +LVTT++VTCLIKVLGEE
Sbjct: 120 CDFIHTESTCREMGFVLARANRLDKLWNFLQEMAKREVFDGRKLVTTNAVTCLIKVLGEE 179

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           GLV EAL+ FYRMK++ C+PDVYAYN +I ALCR+GNF KAR+LLEQMELPGF CPPD +
Sbjct: 180 GLVKEALSLFYRMKKYHCKPDVYAYNTIIYALCRIGNFKKARYLLEQMELPGFYCPPDTF 239

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TYTI+ISSYCKY +QTGCRKAIRRR+WEANHLFR+MLFKGF PDVV YNCLIDGCCKTYR
Sbjct: 240 TYTIMISSYCKYSLQTGCRKAIRRRLWEANHLFRIMLFKGFAPDVVTYNCLIDGCCKTYR 299

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           IERALELF+DMN++GC+PNRVTYNSFIRYYS VNEIDKA+EM+R+MQN+NHG+ TSSSYT
Sbjct: 300 IERALELFEDMNRRGCVPNRVTYNSFIRYYSAVNEIDKAVEMLRRMQNMNHGLATSSSYT 359

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
           PIIHALCEA RVLEARDFL ELVDGGS+PREYTYKLVC+ + +A E +L+DD    RI+D
Sbjct: 360 PIIHALCEADRVLEARDFLLELVDGGSIPREYTYKLVCETMKSAREVNLIDDEFHNRIKD 419

Query: 423 GIEYRFRQVMKVKPIMKHKEL 443
           GI+ RFRQV KVKPIM  K L
Sbjct: 420 GIDERFRQVKKVKPIMVRKML 440


>gi|145337672|ref|NP_177865.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122244095|sp|Q1PFC5.1|PP130_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77405
 gi|91806103|gb|ABE65780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332197853|gb|AEE35974.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 458

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 293/446 (65%), Positives = 359/446 (80%), Gaps = 6/446 (1%)

Query: 1   MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
           M  S+PL ++   +V Q++  M++N PFDA LA+ST     P+T + V+DVL SIPRFFF
Sbjct: 1   MKPSQPLCNR---IVDQLITAMIQNRPFDAVLASSTVA--KPWTQQLVSDVLHSIPRFFF 55

Query: 61  QSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYH 120
            SPRSIGRQ GFRHR+PL+QR L  E+    + VLVLGP AY DP+KV++GL KA EF+ 
Sbjct: 56  ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFF 115

Query: 121 WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVL 179
           W+E  F F HNE+TC++M  + A+GN+ KGLWDFL+ +SRR NG+ +VTT+S+TCL+K L
Sbjct: 116 WIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           D YTYTILISSYC+YGMQTGCRKAIRRR+WEAN +FR MLF+GFVPDVV YNCLIDGCCK
Sbjct: 236 DTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCK 295

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
           T RI RALELF+DM  KGC+PN+VTYNSFIRYYSV NEI+ AIEMMR M+ L HGVP SS
Sbjct: 296 TNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVPGSS 355

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
           +YTP+IHAL E  R  EARD + E+V+ G VPREYTYKLVCDAL++    S LD+ L KR
Sbjct: 356 TYTPLIHALVETRRAAEARDLVVEMVEAGLVPREYTYKLVCDALSSEGLASTLDEELHKR 415

Query: 420 IRDGIEYRFRQVMKVKPIMKHKELLK 445
           +R+GI+ R+ +VMK+KP M  KE+++
Sbjct: 416 MREGIQQRYSRVMKIKPTMARKEVVR 441


>gi|297839599|ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333522|gb|EFH63940.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 459

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 294/455 (64%), Positives = 365/455 (80%), Gaps = 9/455 (1%)

Query: 1   MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
           M  S+PL ++   ++ Q++  M++N PFDA LA+ST    NP+T + V+DVL+SIPRFFF
Sbjct: 1   MKPSQPLCNR---IIDQLIAAMIQNRPFDAVLASSTVA--NPWTQQLVSDVLRSIPRFFF 55

Query: 61  QSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYH 120
            SPRSIGRQ GFRHR+PL+QR L  E+    + VLVLGP AY DP+K++LGL KA EF+ 
Sbjct: 56  ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYIDPKKISLGLQKALEFFF 115

Query: 121 WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVL 179
           W+E  F F HNE+TC++M  + A+GN+ KGLWDFL+ +SRR NG+ +VTT+S+TCL+K L
Sbjct: 116 WIEIHFGFGHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           D YTYTILISSYC+YGMQTGCRKAIRRR+WEAN +FR MLF+GFVPDVV YNCLIDGCCK
Sbjct: 236 DTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCK 295

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
           T RI RALELF+DM  KGC+PN+VTYNSFIRYYSV NEI+ AIEMMR M+ + HGVP SS
Sbjct: 296 TNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKMGHGVPGSS 355

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
           +YTP+IHAL E  R  EARD L E+V+ G VPREYTYKLV DAL++      LD+ L KR
Sbjct: 356 TYTPLIHALVETRRAAEARDLLVEMVEAGLVPREYTYKLVWDALSSEGMAGTLDEELHKR 415

Query: 420 IRDGIEYRFRQVMKVKPIMKHKELLKCG---EIDI 451
           +R+GI+ R+R+VMK+KP+M  K++++     EID+
Sbjct: 416 MREGIQQRYRRVMKIKPVMARKDVVQKSDFHEIDM 450


>gi|356570227|ref|XP_003553291.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Glycine max]
          Length = 732

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/444 (61%), Positives = 334/444 (75%), Gaps = 10/444 (2%)

Query: 1   MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
           MI +  L   H  L  Q L L++K++PFDA     +      +T ++V +VL+ I R+  
Sbjct: 287 MIRTNSLRHFHKHLASQTLVLVIKDLPFDAHPPPPSPSPPP-WTNDAVTEVLRLISRYTL 345

Query: 61  QSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVT-LGLNKATEFY 119
           QSPRSIGRQ  FRHRTPLRQR L  E + + +N L+LGPAA+ DP+K   LG  KA EF+
Sbjct: 346 QSPRSIGRQHTFRHRTPLRQRNLNLEHHKLRSNTLLLGPAAHLDPRKAHHLGPLKALEFF 405

Query: 120 HWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL 179
            WVE  F+F H+E TC+E+  +  R N +K LW FLK      +   VTT++VTCLIK+L
Sbjct: 406 RWVEARFNFPHSEPTCRELACLLGRANALKPLWHFLK------HSPHVTTATVTCLIKLL 459

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           GE+ L +EAL TF+RMKQFRC+PD ++YN +I+ALCRVG F KAR LL+QMELPGFRCPP
Sbjct: 460 GEQALADEALLTFHRMKQFRCKPDTHSYNTLIHALCRVGKFTKARSLLQQMELPGFRCPP 519

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           D +TYTILISSYC++G+ TGCRKA RRRI+EA  LFRLMLF+  VPDVV YN LIDGCCK
Sbjct: 520 DTFTYTILISSYCRHGILTGCRKARRRRIYEAGRLFRLMLFRKLVPDVVTYNALIDGCCK 579

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
           T R+ERALELFDDM ++G +PNRVTY  FIRYY VVNEIDK +EM+R+MQ L HGVP SS
Sbjct: 580 TLRVERALELFDDMKRRGLVPNRVTYGCFIRYYCVVNEIDKGVEMLREMQRLGHGVPGSS 639

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD--DGLR 417
           SYTPIIHALCEAGRV+EA  FL ELV+GGSVPREYTY LVCD L AA E  LL+  DG+ 
Sbjct: 640 SYTPIIHALCEAGRVVEAWWFLVELVEGGSVPREYTYGLVCDRLRAAGEGGLLEDHDGVH 699

Query: 418 KRIRDGIEYRFRQVMKVKPIMKHK 441
           KRI+DGI  R+RQ+MKVKP+M  K
Sbjct: 700 KRIKDGIWNRYRQMMKVKPVMARK 723


>gi|356560456|ref|XP_003548508.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g77405-like [Glycine max]
          Length = 477

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/406 (61%), Positives = 306/406 (75%), Gaps = 15/406 (3%)

Query: 43  FTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAY 102
           ++ ++V +VL+SI  +  Q PRSIGRQ  FRHRTPLRQR L  E   + NN L+LGP A+
Sbjct: 71  WSNDAVTEVLRSISHYTLQFPRSIGRQHTFRHRTPLRQRNLNLEHRKLRNNTLLLGPTAH 130

Query: 103 RDPQKVT-LGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRR 161
            DP K   LG  KA EF+HW+E  F+F H+E TC+E+  + AR   +K LW FLK     
Sbjct: 131 LDPYKAHHLGPLKALEFFHWLESRFNFPHSEPTCRELACLLARATALKPLWHFLK----- 185

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
            +   VTT++VTCLIK+L E+GL +EAL TF+RMKQFRCRPD ++YN +I+ALCRVGNF 
Sbjct: 186 -HSPHVTTATVTCLIKLLSEQGLADEALLTFHRMKQFRCRPDTHSYNTLIHALCRVGNFA 244

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           KAR +L+QMELPGFRCPPD +TY+ILISSYC++G+ TGC KA RRRI+EA  LFRLMLF+
Sbjct: 245 KARSILQQMELPGFRCPPDTFTYSILISSYCRHGILTGCWKATRRRIYEAGRLFRLMLFR 304

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
             VPDVV YN LIDGCCKT R+ERALELFDDM + G +PNRVTY  F+ YY  VNEIDK 
Sbjct: 305 KLVPDVVTYNALIDGCCKTLRMERALELFDDMKRSGVVPNRVTYGCFVSYYCAVNEIDKG 364

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           +EM+R+MQ L  GV +SS YTPIIHALCEAGRV+EA  FL ELV+GGS+PREYTY LVCD
Sbjct: 365 VEMLREMQRLGDGVASSSLYTPIIHALCEAGRVVEACGFLVELVEGGSMPREYTYGLVCD 424

Query: 402 ALNAAEEPSLLD------DGLRKRIRDGIEYRFRQVMKVKPIMKHK 441
              AA E  L +      DG+ KRI+DGI  R+RQ+MKVKP+M+ K
Sbjct: 425 X--AAGEGGLFEDGDGYGDGMHKRIKDGIWNRYRQIMKVKPVMRRK 468


>gi|11079488|gb|AAG29200.1|AC078898_10 hypothetical protein [Arabidopsis thaliana]
          Length = 410

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/447 (54%), Positives = 308/447 (68%), Gaps = 56/447 (12%)

Query: 1   MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
           M  S+PL ++   +V Q++  M++N PFDA LA+ST     P+T + V+DVL SIPRFFF
Sbjct: 1   MKPSQPLCNR---IVDQLITAMIQNRPFDAVLASSTVA--KPWTQQLVSDVLHSIPRFFF 55

Query: 61  QSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYH 120
            SPRSIGRQ GFRHR+PL+QR L  E+    + VLVLGP AY DP+KV++GL KA EF+ 
Sbjct: 56  ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFF 115

Query: 121 WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVL 179
           W+E  F F HNE+TC++M  + A+GN+ KGLWDFL+ +SRR NG+ +VTT+S+TCL+K L
Sbjct: 116 WIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           D YTYTILISSYC+YGMQTGCRKAIRRR+WEAN +FR MLF+G+      Y+        
Sbjct: 236 DTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGY------YSV------- 282

Query: 300 TYRIERALELFDDMNKKG-CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           T  IE A+E+   M K G  +P   TY                                 
Sbjct: 283 TNEIEGAIEMMRTMKKLGHGVPGSSTY--------------------------------- 309

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRK 418
              TP+IHAL E  R  EARD + E+V+ G VPREYTYKLVCDAL++    S LD+ L K
Sbjct: 310 ---TPLIHALVETRRAAEARDLVVEMVEAGLVPREYTYKLVCDALSSEGLASTLDEELHK 366

Query: 419 RIRDGIEYRFRQVMKVKPIMKHKELLK 445
           R+R+GI+ R+ +VMK+KP M  KE+++
Sbjct: 367 RMREGIQQRYSRVMKIKPTMARKEVVR 393


>gi|357466379|ref|XP_003603474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492522|gb|AES73725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 528

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/428 (54%), Positives = 295/428 (68%), Gaps = 37/428 (8%)

Query: 14  LVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTG-F 72
           L +Q L  ++K++PF+     ++  +   +T ++V ++L+ I R+ FQS   IG Q   F
Sbjct: 15  LAKQALVAVIKDIPFET----TSPPSNLIWTPDAVIELLRFISRYSFQS---IGCQNNPF 67

Query: 73  RHRT-PLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHN 131
           RHR+ PL                       + +P    L L K+ EF HW+   F+F H 
Sbjct: 68  RHRSVPLSN-----------------FKHPHTNPYLTNLSLRKSHEFLHWIHSHFNFLHT 110

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRR----GNGELVTTSSVTCLIKVLGEEGLVNE 187
           + T +EM I+ A+ +N   LW FLK  S R     +  +VTT +VTCLIK+LGE+GL  E
Sbjct: 111 QSTTREMAILIAKSHNTNALWTFLKHFSIRLHTNDHNTIVTTPTVTCLIKLLGEQGLAKE 170

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           AL TFYRM+QF C+PDV AYN +INA+C VGNF KAR LL+QMELPGF  PPDV+TYT+L
Sbjct: 171 ALLTFYRMRQFGCKPDVQAYNALINAMCSVGNFTKARHLLQQMELPGFHSPPDVFTYTVL 230

Query: 248 ISSYCKYGMQ-TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           ISSYC+YG++ +GCRKA+RRR++EAN LFR+M+FKG VPDVVAYN LIDGCCKTYR+ RA
Sbjct: 231 ISSYCRYGVKISGCRKAVRRRLYEANRLFRIMVFKGIVPDVVAYNALIDGCCKTYRVGRA 290

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG------VPTSSS 360
           LELFDDM K+GC+PNRVTY+SFIRYYSVVNEIDKA+E +R+MQ  N+       V + SS
Sbjct: 291 LELFDDMKKRGCVPNRVTYDSFIRYYSVVNEIDKAVEFLREMQRSNYDGENGIVVGSCSS 350

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
           YTPIIHALCE GRV +A  FL EL+D GSVPREYTYKLVCD L    E  LL   + +RI
Sbjct: 351 YTPIIHALCEVGRVADAWSFLVELIDNGSVPREYTYKLVCDGLRLKGEDELLSGEVHRRI 410

Query: 421 RDGIEYRF 428
           + GI  R+
Sbjct: 411 KCGILERY 418


>gi|297734359|emb|CBI15606.3| unnamed protein product [Vitis vinifera]
          Length = 381

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/441 (49%), Positives = 273/441 (61%), Gaps = 63/441 (14%)

Query: 1   MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
           MI SKP     + LV+QVL  M++N P DA    S  +   P+T +SV++VL+SIPR FF
Sbjct: 1   MIASKPRYHHRSSLVKQVLAAMVQNCPLDASPNKSCNQ---PWTTDSVSEVLRSIPRLFF 57

Query: 61  QSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYH 120
           QSPRSIGRQ GFRHR+PL+QR L +E               YRDP KV LG+ KA EFY 
Sbjct: 58  QSPRSIGRQKGFRHRSPLKQRNLYQEPNKFHR---------YRDPHKVKLGVEKAMEFYS 108

Query: 121 WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG 180
           WVE  F F HNEMTC+EMG V ARGN +K LW+FL +M+R+G   +VTT+++TCL+KVLG
Sbjct: 109 WVETQFGFSHNEMTCREMGCVLARGNRLKVLWEFLHEMARKGGNGVVTTATITCLMKVLG 168

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           EEGL N+ALA FYRMKQF C+PDVYAYN +I ALCRVGNF KARFLLEQMELPGFRCPPD
Sbjct: 169 EEGLANQALAAFYRMKQFHCKPDVYAYNTIIYALCRVGNFRKARFLLEQMELPGFRCPPD 228

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
            +TYTILI SYCKY +QTGCRKA+RRR+WEANHLFR+ML+   V ++   +  +D  CK 
Sbjct: 229 SFTYTILIGSYCKYSLQTGCRKAVRRRLWEANHLFRIMLYYSAVNEI---DKAVDMLCK- 284

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
                      +MN    IP   +Y   I        I +A + + ++ +    VP   +
Sbjct: 285 ---------MKEMNHG--IPTTSSYTPIIHALCETGRILEARDFLIELVD-GGSVPREYT 332

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
           Y  +  +L  AG                                   E ++L D LR RI
Sbjct: 333 YKVVCDSLRSAG-----------------------------------EANMLGDELRGRI 357

Query: 421 RDGIEYRFRQVMKVKPIMKHK 441
            +GIE R++QVMKVK IM H+
Sbjct: 358 ENGIENRYKQVMKVKLIMTHR 378


>gi|293334435|ref|NP_001169564.1| uncharacterized protein LOC100383443 [Zea mays]
 gi|224030115|gb|ACN34133.1| unknown [Zea mays]
 gi|414872643|tpg|DAA51200.1| TPA: hypothetical protein ZEAMMB73_501808 [Zea mays]
          Length = 424

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 203/427 (47%), Positives = 262/427 (61%), Gaps = 33/427 (7%)

Query: 14  LVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQ-SPRSIGRQTGF 72
           LV Q+L  +L+   FD  L  S T     F+  S+A  L +IPRF    SPR +  Q  F
Sbjct: 26  LVPQLLVALLQRRRFDVTLRVSPTFPG--FSPHSIAAALAAIPRFLLPGSPRRLCPQRPF 83

Query: 73  RHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNE 132
               P       +          +    A+  P  V L                    +E
Sbjct: 84  ----PSASHPSNRRLAAALTLAFLSWSHAHAHPHPVPL--------------------SE 119

Query: 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF 192
              +   +   R + +  L+  L     R +  +V+T+++T +I+VLGEEGL   ALA F
Sbjct: 120 APLRAAALALTRAHALSPLFRLL-----RAHASVVSTAALTDVIRVLGEEGLPRHALAAF 174

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
           +RM+Q  C PD   YN +I ALCR G F+ ARFLL+QME PG RC PD YTYT+LIS YC
Sbjct: 175 HRMRQLHCAPDAQCYNTLIAALCRNGRFSDARFLLDQMERPGARCKPDTYTYTVLISWYC 234

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           + G+ TGCRKA RRRI+EA  LFR M  KG  PDVV YNCLI+G CKTYR+ERA E+FD+
Sbjct: 235 RIGVGTGCRKAARRRIYEAGRLFRRMGEKGLEPDVVTYNCLINGLCKTYRVERAHEMFDE 294

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           M +KGC PNRVTYNSFIRYYSVVN++DKA+E MR+M    HG+ +SS+YTP+IH+LCE+ 
Sbjct: 295 MLRKGCTPNRVTYNSFIRYYSVVNQVDKAVEWMREMVARGHGMASSSTYTPVIHSLCESR 354

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVM 432
           RV EAR FL ++ + G VPRE+TYKLV  A++ A E + L  GL + I DGI  RFRQVM
Sbjct: 355 RVTEARQFLIDMAESGHVPREHTYKLVKAAIDDAGEDA-LPAGLCQSIEDGITARFRQVM 413

Query: 433 KVKPIMK 439
           ++KPIM+
Sbjct: 414 QIKPIMR 420


>gi|257209027|emb|CBB36506.1| Oryza sativa fertility restorer-like protein AAP03402 [Saccharum
           hybrid cultivar R570]
          Length = 418

 Score =  361 bits (927), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 205/432 (47%), Positives = 268/432 (62%), Gaps = 43/432 (9%)

Query: 14  LVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFR 73
           LV Q+L  +L+   FDA L  S T     F+  S+A  L +IPR     PRS        
Sbjct: 20  LVPQLLVALLQRRRFDATLRVSPTFPG--FSPHSIAAALDAIPRLVL--PRS-------- 67

Query: 74  HRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFH--- 130
                 +R+  +  +  A++     P+  R     TL       F  W     D  H   
Sbjct: 68  -----SRRLCPQRPFPSASS-----PSNRRLSAAFTLA------FLSWSH---DHAHAHP 108

Query: 131 ---NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
              +E   +   +   R + +  L+  L     R +  LV+T+++T +I+ LGEEGL   
Sbjct: 109 VQISEAPLRAAALALTRAHALSPLFRLL-----RAHAPLVSTAAITDVIRALGEEGLPRH 163

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           ALATF+RM+Q RC PD   YN +I ALC+ G F  ARFLL+QME PG RC PD YTYT+L
Sbjct: 164 ALATFHRMRQLRCAPDAQCYNTLIAALCQNGRFRDARFLLDQMERPGARCKPDTYTYTVL 223

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           IS YC+ G+ TGCRKA RRRI+EA  LFR M  KG  PDVV YNCLI+G CKTYR+ERA 
Sbjct: 224 ISWYCRIGVGTGCRKAARRRIYEAGRLFRRMGEKGLEPDVVTYNCLINGLCKTYRVERAH 283

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           E+FD+M +KGC PNRVTYNSFIRYYSVVN++DKA+E MR+M    HG+ ++S+YTPIIH+
Sbjct: 284 EVFDEMLRKGCSPNRVTYNSFIRYYSVVNQVDKAVEWMREMVARGHGMASTSTYTPIIHS 343

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYR 427
           LCE+ RV+EAR FL ++ + G VPRE+TYKLV  A++ A E +L  + L + I DGI  R
Sbjct: 344 LCESRRVIEARQFLIDMAESGHVPREHTYKLVKAAIDDAGEDALPAE-LCQSIEDGITAR 402

Query: 428 FRQVMKVKPIMK 439
           FR VM++KPIM+
Sbjct: 403 FRPVMQIKPIMR 414


>gi|242038213|ref|XP_002466501.1| hypothetical protein SORBIDRAFT_01g008870 [Sorghum bicolor]
 gi|241920355|gb|EER93499.1| hypothetical protein SORBIDRAFT_01g008870 [Sorghum bicolor]
          Length = 426

 Score =  357 bits (915), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 169/279 (60%), Positives = 213/279 (76%), Gaps = 1/279 (0%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R +  LV+T+++T +I+ LGEEGL   ALA F+RM+Q RC PD   YN +I ALC+ G F
Sbjct: 145 RAHAPLVSTAALTDVIRALGEEGLPRHALAAFHRMRQLRCAPDAQCYNTLIAALCQNGRF 204

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
             ARFLL+QME PG RC PD YTYT+LIS YC+ G+ TGCRKA RRRI+EA  LFR M  
Sbjct: 205 RDARFLLDQMERPGARCKPDTYTYTVLISWYCRIGVGTGCRKAARRRIYEAGRLFRRMGE 264

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           KG  PDVV YNCLI+G CKTYR++RA E+FD+M +KGC PNRVTYNSFIRYYSVVN++DK
Sbjct: 265 KGLEPDVVTYNCLINGLCKTYRVDRAHEVFDEMLRKGCAPNRVTYNSFIRYYSVVNQVDK 324

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A+E MR+M    HG  ++S+YTPIIH+LCE+ RV+EAR FL ++ + G VPRE+TYKLV 
Sbjct: 325 AVEWMREMIARGHGTASTSTYTPIIHSLCESRRVMEARQFLIDMAECGHVPREHTYKLVK 384

Query: 401 DALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMK 439
            A++ A E +L  + L + I DGI  RFRQVM++KPIM+
Sbjct: 385 SAIDDAREDALPAE-LCQSIEDGITARFRQVMQIKPIMR 422


>gi|125545643|gb|EAY91782.1| hypothetical protein OsI_13425 [Oryza sativa Indica Group]
          Length = 406

 Score =  354 bits (909), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 167/279 (59%), Positives = 213/279 (76%), Gaps = 1/279 (0%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R +  LV+T+++T +I+ LGEEGL   ALA F+R +QF C PD   YN ++ ALCR G F
Sbjct: 125 RDHAPLVSTAALTDVIRALGEEGLPRHALAAFHRARQFHCSPDAQCYNTLLAALCRNGRF 184

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
             ARFLL+QME PG RC PD YTYT+LISSYC+ G++TGCRKA RRRI+EA  LFR M  
Sbjct: 185 KDARFLLDQMERPGARCGPDSYTYTVLISSYCRIGVETGCRKAARRRIYEAGRLFRRMGE 244

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           KG  PDVV YNCLI+G CKTYR+ERA E+FD+M +KGC PNRVTYNSF+RYYSVVNE+DK
Sbjct: 245 KGLEPDVVTYNCLINGLCKTYRVERAHEVFDEMLRKGCSPNRVTYNSFVRYYSVVNEVDK 304

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A++ MR+M    HG  TSS+YTPIIH+LCE+GR+ EAR F+ E+ + G +PRE+TYKLV 
Sbjct: 305 AVKWMREMVARGHGGATSSTYTPIIHSLCESGRISEARQFIIEMAESGHLPREHTYKLVK 364

Query: 401 DALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMK 439
           D +  A E +L  + L + I  GI+ RF+QV+++KPIM+
Sbjct: 365 DEIEKAHEEALPVE-LCQSIDAGIKERFQQVLRMKPIMR 402


>gi|357115353|ref|XP_003559453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77405-like [Brachypodium distachyon]
          Length = 412

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 170/277 (61%), Positives = 211/277 (76%), Gaps = 1/277 (0%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +  LV+T+++T +I+ LGEEGL  EALA F+R +Q RC PD   YN +I ALCR G F +
Sbjct: 133 HAPLVSTAALTDVIRALGEEGLPREALAAFHRARQLRCSPDAQCYNTLIAALCRNGRFKE 192

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           ARFLL+QME PG RC PD YTYT+LIS YC+ G+ TGCRKA RRRI+EA  LFR M  KG
Sbjct: 193 ARFLLDQMERPGARCKPDSYTYTVLISWYCRIGVGTGCRKATRRRIYEAGRLFRRMGEKG 252

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PDVV YNCLI+G CKTYR+ERA E+FD+M KKGC PNRVTYNSF+RYYSVVNE+DKA+
Sbjct: 253 LEPDVVTYNCLINGLCKTYRVERAHEVFDEMLKKGCAPNRVTYNSFVRYYSVVNEVDKAV 312

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           E MR+M    HGV TSS+YTP+IH+L E+GRV +AR FL E+ + G +PRE+TYKLV +A
Sbjct: 313 EWMREMVARGHGVATSSTYTPLIHSLYESGRVGDARRFLIEMAETGHLPREHTYKLVKNA 372

Query: 403 LNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMK 439
           +  A E SL    L + I DGI+ RF  VM++KP+M+
Sbjct: 373 IEEAGEESLPAQ-LCQSIDDGIKERFEHVMRLKPVMR 408


>gi|115455181|ref|NP_001051191.1| Os03g0736200 [Oryza sativa Japonica Group]
 gi|29788856|gb|AAP03402.1| putative fertility restorer-like protein [Oryza sativa Japonica
           Group]
 gi|108710950|gb|ABF98745.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|113549662|dbj|BAF13105.1| Os03g0736200 [Oryza sativa Japonica Group]
 gi|125587839|gb|EAZ28503.1| hypothetical protein OsJ_12484 [Oryza sativa Japonica Group]
          Length = 406

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 167/279 (59%), Positives = 212/279 (75%), Gaps = 1/279 (0%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R +  LV+T+++T +I+ LGEEGL   ALA F+R +QF C PD   YN ++ ALCR G F
Sbjct: 125 RDHAPLVSTAALTDVIRALGEEGLPRHALAAFHRGRQFHCSPDAQCYNTLLAALCRNGRF 184

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
             ARFLL+QME PG RC PD YTYT+LISSYC+ G++TGCRKA RRRI+EA  LFR M  
Sbjct: 185 KDARFLLDQMERPGARCGPDSYTYTVLISSYCRIGVETGCRKAARRRIYEAGRLFRRMGE 244

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           KG  PDVV YNCLI+G CKTYR+ERA E+FD+M +KGC PNRVTYNSF+RYYSVVNE+DK
Sbjct: 245 KGLEPDVVTYNCLINGLCKTYRVERAHEVFDEMLRKGCSPNRVTYNSFVRYYSVVNEVDK 304

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A++ MR+M    HG  TSS+YTPIIH+LCE GR+ EAR F+ E+ + G +PRE+TYKLV 
Sbjct: 305 AVKWMREMVARGHGGATSSTYTPIIHSLCEIGRISEARQFIIEMAESGHLPREHTYKLVK 364

Query: 401 DALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMK 439
           D +  A E +L  + L + I  GI+ RF+QV+++KPIM+
Sbjct: 365 DEIEKAHEEALPVE-LCQSIDAGIKERFQQVLRMKPIMR 402


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 14/225 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G +N+A   F ++      P   AY  +I+ LC   +F+ AR L   M   G
Sbjct: 16  LIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRG 75

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             CPP   TY ++I + CK GM           + EA  L + M+  G VPDVV YN ++
Sbjct: 76  --CPPSPVTYNVMIDASCKRGM-----------LEEACDLIKKMIEDGHVPDVVTYNTVM 122

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+ R+E AL LF++M + GC PNR ++N+ I      ++ID+A ++  +M+  +  
Sbjct: 123 DGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDI- 181

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            P S SY  +I  L +AG++ EA      ++D G  P   TY +V
Sbjct: 182 PPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVV 226



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 18/234 (7%)

Query: 153 DFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           D +K M   G+  ++VT ++V   +  L +   V EAL  F  M++  C P+  ++N +I
Sbjct: 101 DLIKKMIEDGHVPDVVTYNTV---MDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTII 157

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             LC+    ++A  +  +ME      PPD ++Y ILI    K G           ++ EA
Sbjct: 158 LGLCQQSKIDQACQVFHEMEAKDI--PPDSWSYGILIDGLAKAG-----------KLNEA 204

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             LF+ ML  G  P  V YN +I G C  Y ++ ALELF  M  KGC P+R T+N  I  
Sbjct: 205 YKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDA 264

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           +    ++D+A  ++++M +  H VP   +Y+ +I  LC   RV +AR  L ++V
Sbjct: 265 HCKRGKLDEAFRLLKRMTDDGH-VPDVVTYSTLISGLCSIARVDDARHLLEDMV 317



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 115/261 (44%), Gaps = 21/261 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G ++EA     RM      PDV  Y+ +I+ LC +   + AR LLE M    
Sbjct: 261 LIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDM--VK 318

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +C P V T   LI   CK G           RI EA  +   M+  G  PDVV YN L+
Sbjct: 319 RQCKPTVVTQNTLIHGLCKAG-----------RIKEAREVLDAMVSSGQSPDVVTYNTLV 367

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C+  + ERA EL  DM  +G  PN VTY + +      N + +A  +  +M++ +  
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKS-SGC 426

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPS 410
            P   +YT +I   C AG+V        E+V  G  P    Y      +C +  +A    
Sbjct: 427 APNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALE 486

Query: 411 LLDDG---LRKRIRDGIEYRF 428
           +L +G   LR        YRF
Sbjct: 487 ILREGRESLRSEAWGDEVYRF 507



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 118/266 (44%), Gaps = 20/266 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L+DM +R     V T +   LI  L + G + EA      M      PDV  YN +++ 
Sbjct: 312 LLEDMVKRQCKPTVVTQNT--LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHG 369

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            CR G   +AR LL  M   G    P+V TYT L+S  CK             R+ EA  
Sbjct: 370 HCRAGQTERARELLSDMVARGL--APNVVTYTALVSGLCKA-----------NRLPEACG 416

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +F  M   G  P++  Y  LI G C   +++  L+LF +M   G  P+ V Y +      
Sbjct: 417 VFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELC 476

Query: 334 VVNEIDKAIEMMRK-MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
                 +A+E++R+  ++L         Y   +  L EAG++  A  F+ ++V GG +P 
Sbjct: 477 KSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPA 536

Query: 393 -EYTYKLV---CDALNAAEEPSLLDD 414
            E    LV   C +    E  ++L++
Sbjct: 537 PERCASLVAGLCKSGQGGEARAVLEE 562



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 126/287 (43%), Gaps = 31/287 (10%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G   +T + T LI  L      ++A   F  M +  C P    YNV+I+A C+ G   +
Sbjct: 39  SGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEE 98

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------QTGCRKAIR----- 265
           A  L+++M   G    PDV TY  ++   CK               + GC    R     
Sbjct: 99  ACDLIKKMIEDGH--VPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTI 156

Query: 266 -------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                   +I +A  +F  M  K   PD  +Y  LIDG  K  ++  A +LF  M   G 
Sbjct: 157 ILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGI 216

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            P+ VTYN  I    +   +D+A+E+ + M++     P+  ++  +I A C+ G++ EA 
Sbjct: 217 TPSAVTYNVVIHGMCLAYTLDEALELFKSMRS-KGCRPSRFTFNILIDAHCKRGKLDEAF 275

Query: 379 DFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRIR 421
             L  + D G VP   TY      +C      +   LL+D ++++ +
Sbjct: 276 RLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCK 322



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 12/161 (7%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD ++Y ILI    K G           ++ +A +LF+ +L  G  P  VAY  LI G C
Sbjct: 8   PDSWSYGILIDGLAKAG-----------KLNDARNLFQKLLHSGVTPSTVAYTSLIHGLC 56

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
                + A ELF DMN++GC P+ VTYN  I        +++A ++++KM    H VP  
Sbjct: 57  MANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGH-VPDV 115

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +Y  ++  LC++ RV EA     E+   G  P   ++  +
Sbjct: 116 VTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTI 156



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 1/119 (0%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           PD  +Y  LIDG  K  ++  A  LF  +   G  P+ V Y S I    + N  D A E+
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              M N     P+  +Y  +I A C+ G + EA D + ++++ G VP   TY  V D L
Sbjct: 68  FADM-NRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGL 125


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/256 (33%), Positives = 130/256 (50%), Gaps = 17/256 (6%)

Query: 156 KDMSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           + M RR  G   T   V  + +I    + G + EA  T   M++ R  PDV  YN VI+ 
Sbjct: 339 EQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDG 398

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC++G   +A+ +LEQM+  G    PDV TY+ +I+  CK  M           + EA  
Sbjct: 399 LCKLGKIAEAQVILEQMQESG-DVLPDVVTYSTVINGLCKSDM-----------LVEAQK 446

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L   M   G  PDVV Y  +IDG CK  R+E A  L   M + GC PN VTY + I    
Sbjct: 447 LLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLC 506

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS--VP 391
              ++D+A  +M +M+N     P   +Y  +++ LC +GR+ EA+  +  + DG +   P
Sbjct: 507 KARKVDEAERVMEEMRNAGCP-PNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSP 565

Query: 392 REYTYKLVCDALNAAE 407
              TY+ + +AL +++
Sbjct: 566 DAATYRTIVNALMSSD 581



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 122/262 (46%), Gaps = 21/262 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F    ++    + L++M   G      T   T +I  +   G ++ A+     ++   C 
Sbjct: 122 FCNAGDLHAALELLEEMKSAGFAPDAFTH--TPIITAMANAGDLDGAMD---HLRSMGCD 176

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V  Y  +I A  R     +A  LLE+M   G  CPP++ TY +L+ + CK  M     
Sbjct: 177 PNVVTYTALIAAFARAKKLEEAMKLLEEMRERG--CPPNLVTYNVLVDALCKLSM----- 229

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 +  A  + + M+  GF P+V+ +N L+DG CK   ++ A +L   M  KG  PN
Sbjct: 230 ------VGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPN 283

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            VTY++ I       +  +A E++ +M+    GV P + +Y+ +IH LC+A ++ EA   
Sbjct: 284 VVTYSALIDGLCKSQKFLEAKEVLEEMK--TRGVTPDAFTYSALIHGLCKADKIEEAEQM 341

Query: 381 LAELVDGGSVPREYTYKLVCDA 402
           L  +   G  P    Y  +  A
Sbjct: 342 LRRMAGSGCTPDVVVYSSIIHA 363



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 128/274 (46%), Gaps = 18/274 (6%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           V    D +K M   G    V T     L+    + G V++A      M     RP+V  Y
Sbjct: 230 VGAAQDVVKKMIEGGFAPNVMT--FNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTY 287

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           + +I+ LC+   F +A+ +LE+M+  G    PD +TY+ LI   CK             +
Sbjct: 288 SALIDGLCKSQKFLEAKEVLEEMKTRGVT--PDAFTYSALIHGLCKAD-----------K 334

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           I EA  + R M   G  PDVV Y+ +I   CK+ ++  A +   +M K+   P+ VTYN+
Sbjct: 335 IEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNT 394

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I     + +I +A  ++ +MQ     +P   +Y+ +I+ LC++  ++EA+  L  +   
Sbjct: 395 VIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKA 454

Query: 388 GSVPREYTYKLVCDAL---NAAEEPSLLDDGLRK 418
           G  P   TY  + D L      EE   L  G+++
Sbjct: 455 GCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKR 488



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 26/246 (10%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C PDV +YN+VI+  C  G+ + A  LLE+M+  GF   PD +T+T +I++    G   G
Sbjct: 108 CEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGF--APDAFTHTPIITAMANAGDLDG 165

Query: 260 CRKAIR---------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
               +R                     +++ EA  L   M  +G  P++V YN L+D  C
Sbjct: 166 AMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALC 225

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PT 357
           K   +  A ++   M + G  PN +T+NS +  +     +D A +++  M  +  G+ P 
Sbjct: 226 KLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM--VAKGMRPN 283

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
             +Y+ +I  LC++ + LEA++ L E+   G  P  +TY  +   L  A++    +  LR
Sbjct: 284 VVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLR 343

Query: 418 KRIRDG 423
           +    G
Sbjct: 344 RMAGSG 349



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 123/280 (43%), Gaps = 17/280 (6%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
           F  N MT   +   F +  NV      L  M  +G    V T S   LI  L +     E
Sbjct: 245 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSA--LIDGLCKSQKFLE 302

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A      MK     PD + Y+ +I+ LC+     +A  +L +M   G  C PDV  Y+ +
Sbjct: 303 AKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM--AGSGCTPDVVVYSSI 360

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I ++CK G           ++ EA    + M  +   PDVV YN +IDG CK  +I  A 
Sbjct: 361 IHAFCKSG-----------KLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQ 409

Query: 308 ELFDDMNKKG-CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
            + + M + G  +P+ VTY++ I      + + +A +++ +M       P   +YT II 
Sbjct: 410 VILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCN-PDVVTYTTIID 468

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            LC+ GR+ EA   L  +   G  P   TY  +   L  A
Sbjct: 469 GLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKA 508



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 20/213 (9%)

Query: 154 FLKDMSRRGN--GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
            L+ M   G+   ++VT S+V   I  L +  ++ EA     RM +  C PDV  Y  +I
Sbjct: 411 ILEQMQESGDVLPDVVTYSTV---INGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTII 467

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + LC+ G   +A +LL+ M+  G  C P+V TYT LIS  CK            R++ EA
Sbjct: 468 DGLCKCGRLEEAEYLLQGMKRAG--CAPNVVTYTTLISGLCKA-----------RKVDEA 514

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM--NKKGCIPNRVTYNSFI 329
             +   M   G  P++V YN +++G C + RI+ A +L   M   +  C P+  TY + +
Sbjct: 515 ERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIV 574

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
                 + + +A +++ +M++         S T
Sbjct: 575 NALMSSDLVQEAEQLLEQMKSTTSSQQEQGSLT 607



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA  LFR  L     PDV +YN +I G C    +  ALEL ++M   G  P+  T+   I
Sbjct: 95  EAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPII 154

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
              +   ++D A++ +R M       P   +YT +I A   A ++ EA   L E+ + G 
Sbjct: 155 TAMANAGDLDGAMDHLRSM----GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGC 210

Query: 390 VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
            P   TY ++ DAL          D ++K I  G
Sbjct: 211 PPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 244



 Score = 45.4 bits (106), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 7/141 (4%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           GF     ++N L+    +  +   A +LF       C P+  +YN  I  +    ++  A
Sbjct: 72  GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAA 131

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           +E++ +M++     P + ++TPII A+  AG +  A D L  +   G  P   TY  +  
Sbjct: 132 LELLEEMKSAGFA-PDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIA 187

Query: 402 ALNAA---EEPSLLDDGLRKR 419
           A   A   EE   L + +R+R
Sbjct: 188 AFARAKKLEEAMKLLEEMRER 208


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 14/225 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G +N+A   F ++      P   AY  +I+ LC   +F+ AR L   M   G
Sbjct: 16  LIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRG 75

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             CPP   TY ++I + CK GM           + EA  L + M+  G VPDVV YN ++
Sbjct: 76  --CPPSPVTYNVIIDASCKRGM-----------LEEACDLIKKMIEDGHVPDVVTYNTVM 122

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+ R+E AL LF++M + GC PNR ++N+ I      ++ID+A ++  +M+  +  
Sbjct: 123 DGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDI- 181

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            P S SY  +I  L +AG++ EA      ++D G  P   TY +V
Sbjct: 182 PPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVV 226



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 122/234 (52%), Gaps = 18/234 (7%)

Query: 153 DFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           D +K M   G+  ++VT ++V   +  L + G V EAL  F  M++  C P+  ++N +I
Sbjct: 101 DLIKKMIEDGHVPDVVTYNTV---MDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTII 157

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             LC+    ++A  +  +ME      PPD ++Y ILI    K G           ++ EA
Sbjct: 158 LGLCQQSKIDQACQVFHEMEARDI--PPDSWSYGILIDGLAKAG-----------KLNEA 204

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             LFR ML  G  P  V YN +I G C  Y ++ ALELF  M  KGC P+R T+N  I  
Sbjct: 205 YKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDA 264

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           +    ++D+A  ++++M +  H VP   +Y+ +I  LC   RV +AR  L ++V
Sbjct: 265 HCKRGKMDEAFRLLKRMTDDGH-VPDVVTYSTLISGLCSIARVDDARHLLEDMV 317



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 115/261 (44%), Gaps = 21/261 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G ++EA     RM      PDV  Y+ +I+ LC +   + AR LLE M    
Sbjct: 261 LIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDM--VK 318

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +C P V T   LI   CK G           RI EA  +   M+  G  PDVV YN L+
Sbjct: 319 RQCKPTVVTQNTLIHGLCKAG-----------RIKEAREVLDAMVSSGQSPDVVTYNTLV 367

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C+  + ERA EL  DM  +G  PN VTY + +      N + +A  +  +M++ +  
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKS-SGC 426

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPS 410
            P   +YT +I   C AG+V        E+V  G  P    Y      +C +  +A    
Sbjct: 427 APNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALE 486

Query: 411 LLDDG---LRKRIRDGIEYRF 428
           +L +G   LR        YRF
Sbjct: 487 ILREGRESLRSEAWGDEVYRF 507



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 118/266 (44%), Gaps = 20/266 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L+DM +R     V T +   LI  L + G + EA      M      PDV  YN +++ 
Sbjct: 312 LLEDMVKRQCKPTVVTQNT--LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHG 369

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            CR G   +AR LL  M   G    P+V TYT L+S  CK             R+ EA  
Sbjct: 370 HCRAGQTERARELLSDMVARGL--APNVVTYTALVSGLCKA-----------NRLPEACG 416

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +F  M   G  P++  Y  LI G C   +++  L+LF +M   G  P+ V Y +      
Sbjct: 417 VFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELC 476

Query: 334 VVNEIDKAIEMMRK-MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
                 +A+E++R+  ++L         Y   +  L +AG++  A  F+ ++V GG +P 
Sbjct: 477 KSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPA 536

Query: 393 -EYTYKLV---CDALNAAEEPSLLDD 414
            E    LV   C +    E  ++L++
Sbjct: 537 PERCASLVAGLCKSGQGGEARAVLEE 562



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 12/161 (7%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD ++Y ILI    K G           ++ +A  LF+ +L  G  P  VAY  LI G C
Sbjct: 8   PDSWSYGILIDGLAKAG-----------KLNDARDLFQKLLHSGVTPSTVAYTSLIHGLC 56

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
                + A ELF DMN++GC P+ VTYN  I        +++A ++++KM    H VP  
Sbjct: 57  MANSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGH-VPDV 115

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +Y  ++  LC++GRV EA     E+   G  P   ++  +
Sbjct: 116 VTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTI 156



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           PD  +Y  LIDG  K  ++  A +LF  +   G  P+ V Y S I    + N  D A E+
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              M N     P+  +Y  II A C+ G + EA D + ++++ G VP   TY  V D L
Sbjct: 68  FADM-NRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGL 125


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 136/284 (47%), Gaps = 16/284 (5%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +G+ ++     L+ M  R     V T S   LI  L + G V +A   F RM      
Sbjct: 227 LCKGDRLQEAQQVLETMEDRNCTPNVITYSS--LIDGLCKTGQVRDAQEVFKRMIVRGIE 284

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V  YN +I+  C     + A  L+E+M   G  C PD+ TY  LI   CK G      
Sbjct: 285 PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG--CLPDIITYNTLIDGLCKTG------ 336

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R  EAN LF  M  K   PDV+ Y+CLI G CK  RI+ A  LFDDM K+  +P+
Sbjct: 337 -----RAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPD 391

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VT+++ +  Y     +D A  ++ +M   +   P   +YT ++   C+ GR++EAR  L
Sbjct: 392 VVTFSTLVEGYCNAGLVDDAERLLEEMVASDCS-PDVYTYTSLVDGFCKVGRMVEARRVL 450

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
             +   G  P   TY  + DA   A +P++    L + + +G++
Sbjct: 451 KRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQ 494



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 125/273 (45%), Gaps = 20/273 (7%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           ++ L +M  RG        S   L+  L + G ++ AL  F       C PDV AY+ +I
Sbjct: 132 YELLDEMRERGLQP--DKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLI 189

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             LC+ G  ++A  L E+M      C PDV T+T L+   CK             R+ EA
Sbjct: 190 AGLCKTGRLDEACKLFEKMRENS--CEPDVVTFTALMDGLCK-----------GDRLQEA 236

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +   M  +   P+V+ Y+ LIDG CKT ++  A E+F  M  +G  PN VTYNS I  
Sbjct: 237 QQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHG 296

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           + + N +D A+ +M +M      +P   +Y  +I  LC+ GR  EA     ++      P
Sbjct: 297 FCMTNGVDSALLLMEEM-TATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNP 355

Query: 392 REYTYKLVCDALNAAEE----PSLLDDGLRKRI 420
              TY  +       E      +L DD L++ +
Sbjct: 356 DVITYSCLIGGFCKLERIDMARTLFDDMLKQAV 388



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 120/263 (45%), Gaps = 18/263 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F R   V   +   + M    NG +    +   L+  L   GL++EA      M++   +
Sbjct: 87  FCRQTKVDTAYKLFRQMVE--NGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQ 144

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD ++Y+ ++  LC+ G  + A  + E  +     CPPDV  Y+ LI+  CK G      
Sbjct: 145 PDKFSYDTLMAGLCKTGKIDMALKVFE--DNSNGDCPPDVVAYSTLIAGLCKTG------ 196

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ EA  LF  M      PDVV +  L+DG CK  R++ A ++ + M  + C PN
Sbjct: 197 -----RLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN 251

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            +TY+S I       ++  A E+ ++M  +  G+ P   +Y  +IH  C    V  A   
Sbjct: 252 VITYSSLIDGLCKTGQVRDAQEVFKRM--IVRGIEPNVVTYNSLIHGFCMTNGVDSALLL 309

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           + E+   G +P   TY  + D L
Sbjct: 310 MEEMTATGCLPDIITYNTLIDGL 332



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 118/231 (51%), Gaps = 14/231 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I  L +   + EA   F +MK+    P+ + YNV+IN  C+V   ++A  LL++M+ 
Sbjct: 11  TIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKE 70

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P+V TY+ +I  +C+           + ++  A  LFR M+  G +P++V YN 
Sbjct: 71  SGL--APNVVTYSTVIHGFCR-----------QTKVDTAYKLFRQMVENGCMPNLVTYNT 117

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+ G C+   ++ A EL D+M ++G  P++ +Y++ +       +ID A+++     N  
Sbjct: 118 LLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSN-G 176

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              P   +Y+ +I  LC+ GR+ EA     ++ +    P   T+  + D L
Sbjct: 177 DCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGL 227



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 13/224 (5%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           +CLI    +   ++ A   F  M +    PDV  ++ ++   C  G  + A  LLE+M  
Sbjct: 361 SCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM-- 418

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
               C PDVYTYT L+  +CK G           R+ EA  + + M  +G  P+VV Y  
Sbjct: 419 VASDCSPDVYTYTSLVDGFCKVG-----------RMVEARRVLKRMAKRGCQPNVVTYTA 467

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LID  C+  +   A +L ++M   G  PN +TY S I  +    ++++A +M+ +++   
Sbjct: 468 LIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDE 527

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +      +Y  ++  LC  GR+  A + L  +   G+ PR   Y
Sbjct: 528 NCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIY 571



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 27/228 (11%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           GLV++A      M    C PDVY Y  +++  C+VG   +AR +L++M   G  C P+V 
Sbjct: 406 GLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRG--CQPNVV 463

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIW---EANHLFRLMLFKGFV--------------- 284
           TYT LI ++C+ G  T   K +   +    + N +    L  GF                
Sbjct: 464 TYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERL 523

Query: 285 -------PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
                   D+ AY  ++DG C+T R+  ALEL + + + G  P    Y + IR      E
Sbjct: 524 ERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKE 583

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           + KA+E++ +M       P + +Y  +I  L   GR  EA     EL+
Sbjct: 584 LGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADELL 631



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 12/162 (7%)

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  +V T+TI+I   CK             R+ EA   F  M  KG VP+   YN LI
Sbjct: 1   MECEKNVITWTIMIDGLCKA-----------NRLPEATTYFAKMKKKGTVPNEWTYNVLI 49

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G CK +++ RA  L  +M + G  PN VTY++ I  +    ++D A ++ R+M   N  
Sbjct: 50  NGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE-NGC 108

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +P   +Y  ++  LC  G + EA + L E+ + G  P +++Y
Sbjct: 109 MPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSY 150


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 136/284 (47%), Gaps = 16/284 (5%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +G+ ++     L+ M  R     V T S   LI  L + G V +A   F RM      
Sbjct: 346 LCKGDRLQEAQQVLETMEDRNCTPNVITYSS--LIDGLCKTGQVRDAQEVFKRMIVRGIE 403

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V  YN +I+  C     + A  L+E+M   G  C PD+ TY  LI   CK G      
Sbjct: 404 PNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG--CLPDIITYNTLIDGLCKTG------ 455

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R  EAN LF  M  K   PDV+ Y+CLI G CK  RI+ A  LFDDM K+  +P+
Sbjct: 456 -----RAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPD 510

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VT+++ +  Y     +D A  ++ +M   +   P   +YT ++   C+ GR++EAR  L
Sbjct: 511 VVTFSTLVEGYCNAGLVDDAERLLEEMV-ASDCSPDVYTYTSLVDGFCKVGRMVEARRVL 569

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
             +   G  P   TY  + DA   A +P++    L + + +G++
Sbjct: 570 KRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQ 613



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 133/284 (46%), Gaps = 19/284 (6%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           + A  F+HW  +   F HN  T   +     R   +      LK+    G    V T +V
Sbjct: 5   DAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAV 64

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             +I+ L + G +++A      M++    PD   YN VI+ALC+  N  KA      ME 
Sbjct: 65  --VIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME- 121

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
               C  +V T+TI+I   CK             R+ EA   F  M  KG VP+   YN 
Sbjct: 122 ----CEKNVITWTIMIDGLCK-----------ANRLPEATTYFAKMKKKGTVPNEWTYNV 166

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI+G CK +++ RA  L  +M + G  PN VTY++ I  +    ++D A ++ R+M   N
Sbjct: 167 LINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE-N 225

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             +P   +Y  ++  LC  G + EA + L E+ + G  P +++Y
Sbjct: 226 GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSY 269



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 125/273 (45%), Gaps = 20/273 (7%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           ++ L +M  RG        S   L+  L + G ++ AL  F       C PDV AY+ +I
Sbjct: 251 YELLDEMRERGLQP--DKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLI 308

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             LC+ G  ++A  L E+M      C PDV T+T L+   CK             R+ EA
Sbjct: 309 AGLCKAGRLDEACKLFEKMRENS--CEPDVVTFTALMDGLCK-----------GDRLQEA 355

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +   M  +   P+V+ Y+ LIDG CKT ++  A E+F  M  +G  PN VTYNS I  
Sbjct: 356 QQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHG 415

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           + + N +D A+ +M +M      +P   +Y  +I  LC+ GR  EA     ++      P
Sbjct: 416 FCMTNGVDSALLLMEEM-TATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNP 474

Query: 392 REYTYKLVCDALNAAEE----PSLLDDGLRKRI 420
              TY  +       E      +L DD L++ +
Sbjct: 475 DVITYSCLIGGFCKLERIDMARTLFDDMLKQAV 507



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 120/263 (45%), Gaps = 18/263 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F R   V   +   + M    NG +    +   L+  L   GL++EA      M++   +
Sbjct: 206 FCRQTKVDTAYKLFRQMVE--NGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQ 263

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD ++Y+ ++  LC+ G  + A  + E  +     CPPDV  Y+ LI+  CK G      
Sbjct: 264 PDKFSYDTLMAGLCKTGKIDMALKVFE--DNSNGDCPPDVVAYSTLIAGLCKAG------ 315

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ EA  LF  M      PDVV +  L+DG CK  R++ A ++ + M  + C PN
Sbjct: 316 -----RLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN 370

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            +TY+S I       ++  A E+ ++M  +  G+ P   +Y  +IH  C    V  A   
Sbjct: 371 VITYSSLIDGLCKTGQVRDAQEVFKRM--IVRGIEPNVVTYNSLIHGFCMTNGVDSALLL 428

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           + E+   G +P   TY  + D L
Sbjct: 429 MEEMTATGCLPDIITYNTLIDGL 451



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 127/263 (48%), Gaps = 19/263 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
              +  N     D+ + M    N       + T +I  L +   + EA   F +MK+   
Sbjct: 103 ALCKARNTAKALDYFRSMECEKN-----VITWTIMIDGLCKANRLPEATTYFAKMKKKGT 157

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+ + YNV+IN  C+V   ++A  LL++M+  G    P+V TY+ +I  +C+       
Sbjct: 158 VPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGL--APNVVTYSTVIHGFCR------- 208

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
               + ++  A  LFR M+  G +P++V YN L+ G C+   ++ A EL D+M ++G  P
Sbjct: 209 ----QTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQP 264

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           ++ +Y++ +       +ID A+++     N     P   +Y+ +I  LC+AGR+ EA   
Sbjct: 265 DKFSYDTLMAGLCKTGKIDMALKVFEDNSN-GDCPPDVVAYSTLIAGLCKAGRLDEACKL 323

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
             ++ +    P   T+  + D L
Sbjct: 324 FEKMRENSCEPDVVTFTALMDGL 346



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 13/226 (5%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + +CLI    +   ++ A   F  M +    PDV  ++ ++   C  G  + A  LLE+M
Sbjct: 478 TYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM 537

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                 C PDVYTYT L+  +CK G           R+ EA  + + M  +G  P+VV Y
Sbjct: 538 --VASDCSPDVYTYTSLVDGFCKVG-----------RMVEARRVLKRMAKRGCQPNVVTY 584

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LID  C+  +   A  L ++M   G  PN +TY S I  +    ++++A +++ +++ 
Sbjct: 585 TALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLER 644

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             +      +Y  ++  LC  GR+  A + L  +   G+ PR   Y
Sbjct: 645 DENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIY 690



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 30/246 (12%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           ++VT S+   L++     GLV++A      M    C PDVY Y  +++  C+VG   +AR
Sbjct: 510 DVVTFST---LVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEAR 566

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW---EANHLFRLMLFK 281
            +L++M   G  C P+V TYT LI ++C+ G  T   + +   +    + N +    L  
Sbjct: 567 RVLKRMAKRG--CQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIG 624

Query: 282 GFV----------------------PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           GF                        D+ AY  ++DG C+T R+  ALEL + + + G  
Sbjct: 625 GFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTP 684

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P    Y + IR      E+ KA+E++ +M       P + +Y  +I  L   GR  EA  
Sbjct: 685 PRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANA 744

Query: 380 FLAELV 385
              EL+
Sbjct: 745 LADELL 750



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 15/160 (9%)

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           +VYTY  L  +  +            RRI E  H+ +     G  P+V  Y  +I G CK
Sbjct: 23  NVYTYNRLFEALLR-----------ARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCK 71

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
           +  +++A EL ++M + G +P+   YN  I          KA++  R M+   + +    
Sbjct: 72  SGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVI---- 127

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           ++T +I  LC+A R+ EA  + A++   G+VP E+TY ++
Sbjct: 128 TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVL 167


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 139/265 (52%), Gaps = 19/265 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALAT-FYRMKQF 198
            F +   +K   +  K M+ +G   ++VT S++   I  L + G V EAL   F++M + 
Sbjct: 87  AFCKETKMKEAMELFKTMAEKGFEPDVVTYSTI---ISGLCKTGKVTEALEMLFHKMIER 143

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
            C  +  AYN +IN LC+  N  +A  LLE+M   G+   PD  TY  ++S  C+ G   
Sbjct: 144 GCSANTVAYNALINGLCKDENIERAYKLLEEMASKGY--VPDNITYNTILSGLCRMG--- 198

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                   ++ EA   F  M  +G+ PDVVAYN L+D   K  + + A++LF D+  KG 
Sbjct: 199 --------KVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGY 250

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           +P+ VTYNS +   +  + +D+A EM +KM   +   P  ++Y+ ++   C A +V +A 
Sbjct: 251 MPDTVTYNSILLGLARKSNMDEAEEMFKKMV-ASGCAPNGATYSIVLSGHCRAKKVDDAH 309

Query: 379 DFLAELVDGGSVPREYTYKLVCDAL 403
             L E+   G+VP   TY ++ D L
Sbjct: 310 KVLEEMSKIGAVPDVVTYNILLDGL 334



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 15/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++K   ++G + +    F +M      PD   YN++I+   + G  ++A  L E+M   G
Sbjct: 14  VLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVG 73

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P +YTY  L++++CK             ++ EA  LF+ M  KGF PDVV Y+ +I
Sbjct: 74  LE--PSIYTYNSLLNAFCK-----------ETKMKEAMELFKTMAEKGFEPDVVTYSTII 120

Query: 295 DGCCKTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
            G CKT ++  ALE LF  M ++GC  N V YN+ I        I++A +++ +M +  +
Sbjct: 121 SGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGY 180

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            VP + +Y  I+  LC  G+V EA+ F   +   G  P    Y  + DAL
Sbjct: 181 -VPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDAL 229



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 135/297 (45%), Gaps = 29/297 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R   V     F   M  RG    V   +   L+  L +EG  +EA+  F  +      
Sbjct: 194 LCRMGKVSEAKQFFDSMPSRGYSPDVV--AYNGLLDALYKEGKTDEAMKLFKDVIAKGYM 251

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN ++  L R  N ++A  + ++M   G  C P+  TY+I++S +C+        
Sbjct: 252 PDTVTYNSILLGLARKSNMDEAEEMFKKMVASG--CAPNGATYSIVLSGHCR-------- 301

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               +++ +A+ +   M   G VPDVV YN L+DG CKT  +++A ELF  M   GC P+
Sbjct: 302 ---AKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPD 358

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            V+Y+  +      N++  A  +  +M      VP   ++  ++  LC+AG++ EA+D L
Sbjct: 359 IVSYSVVLNGLCKTNKVHDARVLFDRMIE-RKLVPDVVTFNILMDGLCKAGKLDEAKDLL 417

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIM 438
            ++   G  P    Y             + L +GLRK+ R     R  Q MK K  +
Sbjct: 418 DQMTCSGCAPDYVAY-------------NTLMNGLRKQGRHIQADRLTQAMKEKGFL 461



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 15/226 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    ++G V+EA   +  M      P +Y YN ++NA C+     +A  L + M   G
Sbjct: 49  LIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKG 108

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA-NHLFRLMLFKGFVPDVVAYNCL 293
           F   PDV TY+ +IS  CK G           ++ EA   LF  M+ +G   + VAYN L
Sbjct: 109 FE--PDVVTYSTIISGLCKTG-----------KVTEALEMLFHKMIERGCSANTVAYNAL 155

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G CK   IERA +L ++M  KG +P+ +TYN+ +     + ++ +A +    M +  +
Sbjct: 156 INGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGY 215

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             P   +Y  ++ AL + G+  EA     +++  G +P   TY  +
Sbjct: 216 S-PDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSI 260



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 99/207 (47%), Gaps = 17/207 (8%)

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
            C P+ Y + VV+ + C+ G       L EQM   G    PD   Y ILI  Y K G   
Sbjct: 3   ECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGI--SPDGIEYNILIDGYAKKG--- 57

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                   R+ EAN L+  M+  G  P +  YN L++  CK  +++ A+ELF  M +KG 
Sbjct: 58  --------RVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGF 109

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMM-RKMQNLNHGVPTSS-SYTPIIHALCEAGRVLE 376
            P+ VTY++ I       ++ +A+EM+  KM  +  G   ++ +Y  +I+ LC+   +  
Sbjct: 110 EPDVVTYSTIISGLCKTGKVTEALEMLFHKM--IERGCSANTVAYNALINGLCKDENIER 167

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A   L E+   G VP   TY  +   L
Sbjct: 168 AYKLLEEMASKGYVPDNITYNTILSGL 194



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 13/124 (10%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG      S + ++  L +   V++A   F RM + +  PDV  +N++++ LC+ G  ++
Sbjct: 353 NGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDE 412

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A+ LL+QM   G  C PD   Y  L++   K G           R  +A+ L + M  KG
Sbjct: 413 AKDLLDQMTCSG--CAPDYVAYNTLMNGLRKQG-----------RHIQADRLTQAMKEKG 459

Query: 283 FVPD 286
           F+ D
Sbjct: 460 FLSD 463


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 132/257 (51%), Gaps = 19/257 (7%)

Query: 156 KDMSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           + M RR  G   T   V  + +I    + G + EA  T   M++ R  PDV  YN VI+ 
Sbjct: 217 EQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDG 276

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC++G   +A+ +L+QM+  G    PDV TY+ +I+  CK  M           + EA  
Sbjct: 277 LCKLGKIAEAQVILDQMQESG-DVLPDVVTYSTVINGLCKSDM-----------LVEAQK 324

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L   M   G  PDVV Y  +IDG CK  R+E A  L   M + GC PN VTY + I    
Sbjct: 325 LLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLC 384

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGS--V 390
              ++D+A  +M +M+  N G P +  +Y  +++ LC +GR+ EA+  +  + DG +   
Sbjct: 385 KARKVDEAERVMEEMR--NAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECS 442

Query: 391 PREYTYKLVCDALNAAE 407
           P   TY+ + +AL +++
Sbjct: 443 PDAATYRTIVNALMSSD 459



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 136/276 (49%), Gaps = 23/276 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
            A   ++ G  D L+ M    N       + T LI        + EA+     M++  C 
Sbjct: 35  MANAGDLDGAMDHLRSMGCDPN-----VVTYTALIAAFARAKKLEEAMKLLEEMRERGCP 89

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  YNV+++ALC++     A+ ++++M   GF   P+V T+  L+  +CK G      
Sbjct: 90  PNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGF--APNVMTFNSLVDGFCKRG------ 141

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + +A  L  +M+ KG  P+VV Y+ LIDG CK+ +   A E+ ++M   G  P+
Sbjct: 142 -----NVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPD 196

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TY++ I      ++I++A +M+R+M   +   P    Y+ IIHA C++G++LEA+  L
Sbjct: 197 AFTYSALIHGLCKADKIEEAEQMLRRMAG-SGCTPDVVVYSSIIHAFCKSGKLLEAQKTL 255

Query: 382 AELVDGGSVPREYTYKLVCDAL----NAAEEPSLLD 413
            E+      P   TY  V D L      AE   +LD
Sbjct: 256 QEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILD 291



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 128/274 (46%), Gaps = 18/274 (6%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           V    D +K M   G    V T     L+    + G V++A      M     RP+V  Y
Sbjct: 108 VGAAQDVVKKMIEGGFAPNVMT--FNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTY 165

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           + +I+ LC+   F +A+ +LE+M+  G    PD +TY+ LI   CK             +
Sbjct: 166 SALIDGLCKSQKFLEAKEVLEEMKASGV--TPDAFTYSALIHGLCKA-----------DK 212

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           I EA  + R M   G  PDVV Y+ +I   CK+ ++  A +   +M K+   P+ VTYN+
Sbjct: 213 IEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNT 272

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I     + +I +A  ++ +MQ     +P   +Y+ +I+ LC++  ++EA+  L  +   
Sbjct: 273 VIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKA 332

Query: 388 GSVPREYTYKLVCDAL---NAAEEPSLLDDGLRK 418
           G  P   TY  + D L      EE   L  G+++
Sbjct: 333 GCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKR 366



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 123/280 (43%), Gaps = 17/280 (6%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
           F  N MT   +   F +  NV      L  M  +G    V T S   LI  L +     E
Sbjct: 123 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSA--LIDGLCKSQKFLE 180

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A      MK     PD + Y+ +I+ LC+     +A  +L +M   G  C PDV  Y+ +
Sbjct: 181 AKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM--AGSGCTPDVVVYSSI 238

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I ++CK G           ++ EA    + M  +   PDVV YN +IDG CK  +I  A 
Sbjct: 239 IHAFCKSG-----------KLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQ 287

Query: 308 ELFDDMNKKG-CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
            + D M + G  +P+ VTY++ I      + + +A +++ +M       P   +YT II 
Sbjct: 288 VILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCN-PDVVTYTTIID 346

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            LC+ GR+ EA   L  +   G  P   TY  +   L  A
Sbjct: 347 GLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKA 386



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 114/242 (47%), Gaps = 19/242 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++ AL     MK     PD + +  +I A+   G+ + A   L  M      C P+V 
Sbjct: 4   GDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM-----GCDPNVV 58

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TYT LI+++ +            +++ EA  L   M  +G  P++V YN L+D  CK   
Sbjct: 59  TYTALIAAFARA-----------KKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSM 107

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           +  A ++   M + G  PN +T+NS +  +     +D A +++  M  +  G+ P   +Y
Sbjct: 108 VGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIM--VAKGMRPNVVTY 165

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
           + +I  LC++ + LEA++ L E+   G  P  +TY  +   L  A++    +  LR+   
Sbjct: 166 SALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAG 225

Query: 422 DG 423
            G
Sbjct: 226 SG 227



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 19/190 (10%)

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           C  G+ + A  LLE+M+  GF   PD +T+T +I++    G   G            +HL
Sbjct: 1   CNAGDLHAALELLEEMKSAGF--APDAFTHTPIITAMANAGDLDGAM----------DHL 48

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
             +    G  P+VV Y  LI    +  ++E A++L ++M ++GC PN VTYN  +     
Sbjct: 49  RSM----GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 104

Query: 335 VNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           ++ +  A ++++KM  +  G  P   ++  ++   C+ G V +AR  L  +V  G  P  
Sbjct: 105 LSMVGAAQDVVKKM--IEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNV 162

Query: 394 YTYKLVCDAL 403
            TY  + D L
Sbjct: 163 VTYSALIDGL 172


>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
 gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
          Length = 535

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 126/243 (51%), Gaps = 14/243 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G V EA A    M    C PD  +Y + I AL  +G   +A  + E M   G  C PD++
Sbjct: 260 GKVEEAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKG--CKPDMH 317

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY I+I ++CK G            +  A H+ RLM      P+   Y  ++DG  K+ R
Sbjct: 318 TYGIIIDNFCKEG-----------SMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSR 366

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           +E ALEL+  + K G +P+ VTYN+ I     + ++D+A+E++R+MQ     + P+  +Y
Sbjct: 367 LEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTY 426

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
           + IIH L + G    A D LAE++D G +P  +TY  +   L  A + S   + L + ++
Sbjct: 427 SMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLK 486

Query: 422 DGI 424
            GI
Sbjct: 487 AGI 489



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 135/270 (50%), Gaps = 20/270 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T S T  I+ L   G   EA   F  M +  C+PD++ Y ++I+  C+ G+   A  +L 
Sbjct: 281 TISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLR 340

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M+    +  P+ Y YT+++  + K             R+ EA  L++ +L  G +P  V
Sbjct: 341 LMDKAAVK--PNRYIYTMIMDGFVK-----------SSRLEEALELYQRILKDGILPSTV 387

Query: 289 AYNCLIDGCCKTYRIERALELFDDMN--KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            YN +I+  CK  +++ ALEL  +M   K+   P+ VTY+  I     V   ++A +++ 
Sbjct: 388 TYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLA 447

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           +M + N  +P   +YT +I  L  AG+V  A + L E++  G  P ++TY  +   L  +
Sbjct: 448 EMID-NGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRS 506

Query: 407 EEPSLLDDGLRKRIRDGI---EYRFRQVMK 433
           +  +   D L++ +R+G    E+ F+ V K
Sbjct: 507 DVDAAW-DLLQEMMRNGHTPNEFTFKAVEK 535



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 124/271 (45%), Gaps = 27/271 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
           FA  ++ + +   L++M  RG    +T++  T   ++  L     +++A++ F    +  
Sbjct: 39  FAARDDFEVVNALLREMKARG----ITSNGATHGVILSALCARRDLDKAVSYFNSRTEEA 94

Query: 200 CR-------PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
           CR       PD   Y  +++ L + GN++      E+M     +C P + TYT+L+   C
Sbjct: 95  CRLFEAIEAPDSVTYTAIVDGLFKAGNYDAGLEYYEKM--VASKCEPTLLTYTVLVDGLC 152

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           K             ++  A  +F  M+ KG  PD++AY+ LIDG  K  R++ A +L D 
Sbjct: 153 K-----------AHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARKLVDL 201

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           M  +G  P  V Y S +        I +A++ +++M+          +Y+ I+      G
Sbjct: 202 MIARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRV-DTYSFIVTGYIGMG 260

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +V EA   + E+ D    P   +Y +  +AL
Sbjct: 261 KVEEAFAVMEEMADRDCAPDTISYTMFIEAL 291



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 148/344 (43%), Gaps = 39/344 (11%)

Query: 92  NNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIV---FARGNNV 148
           + V++    A RD  K     N  TE      R F+      +     IV   F  GN  
Sbjct: 67  HGVILSALCARRDLDKAVSYFNSRTE---EACRLFEAIEAPDSVTYTAIVDGLFKAGNYD 123

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
            GL  + K ++ +    L+T    T L+  L +   V  A   F  M +   +PD+ AY+
Sbjct: 124 AGLEYYEKMVASKCEPTLLT---YTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYS 180

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
            +I+ L + G  ++AR L++ M   G   PP    YT +++  CK G           RI
Sbjct: 181 SLIDGLSKAGRVDEARKLVDLMIARG--PPPTAVAYTSIVAGLCKCG-----------RI 227

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            EA    + M  +   P V  Y+ ++ G     ++E A  + ++M  + C P+ ++Y  F
Sbjct: 228 QEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAVMEEMADRDCAPDTISYTMF 287

Query: 329 IR-YYSVV--NEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           I   YS+    E +K  E M     +  G  P   +Y  II   C+ G +  A   L  L
Sbjct: 288 IEALYSIGRREEAEKVFETM-----VEKGCKPDMHTYGIIIDNFCKEGSMAAATHVL-RL 341

Query: 385 VDGGSV-PREYTYKLVCDALNAAEEPSLLDDGL---RKRIRDGI 424
           +D  +V P  Y Y ++ D      + S L++ L   ++ ++DGI
Sbjct: 342 MDKAAVKPNRYIYTMIMDGFV---KSSRLEEALELYQRILKDGI 382



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 43/244 (17%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L   G +++AL  F   +     P+V ++N+++       +F     LL +M+  G
Sbjct: 3   LLLALVRGGQLSDALGFF---QSSISEPNVSSFNILLRGFAARDDFEVVNALLREMKARG 59

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM--------------LF 280
                +  T+ +++S+ C              R  EA  LF  +              LF
Sbjct: 60  I--TSNGATHGVILSALCARRDLDKAVSYFNSRTEEACRLFEAIEAPDSVTYTAIVDGLF 117

Query: 281 KGF-----------------VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
           K                    P ++ Y  L+DG CK +++ERA ++F++M +KG  P+ +
Sbjct: 118 KAGNYDAGLEYYEKMVASKCEPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDII 177

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG---VPTSSSYTPIIHALCEAGRVLEARDF 380
            Y+S I   S    +D+A    RK+ +L       PT+ +YT I+  LC+ GR+ EA   
Sbjct: 178 AYSSLIDGLSKAGRVDEA----RKLVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVKT 233

Query: 381 LAEL 384
           + E+
Sbjct: 234 IQEM 237



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 14/134 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L++M RR      +  + + +I  LG+ G+   A      M      PD + Y  +I 
Sbjct: 407 ELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQ 466

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            L   G  ++A  LLE+M   G    PD +TY  L+   C+  +            W+  
Sbjct: 467 TLAGAGKVSRAMELLEEMLKAGIF--PDDHTYGTLVQILCRSDVDAA---------WD-- 513

Query: 273 HLFRLMLFKGFVPD 286
            L + M+  G  P+
Sbjct: 514 -LLQEMMRNGHTPN 526


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 124/230 (53%), Gaps = 16/230 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + + L+    +EG V EA   F  M +   +P++  YN ++N  C V   NKA  + 
Sbjct: 278 TVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIF 337

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
             M   G    PDV++Y+I+IS +CK  M           + EA  LF  M  K   PDV
Sbjct: 338 NTMAQIG--VAPDVHSYSIMISGFCKIKM-----------VDEAMKLFEEMHCKQIFPDV 384

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V YN LIDG CK+ RI  AL+L  +M+ +G  PN +TYNS +      + +DKAIE++ K
Sbjct: 385 VTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTK 444

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           ++  +H + P+  +Y  +I+ LC++GR+ +A+    +++  G     YTY
Sbjct: 445 LK--DHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTY 492



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 126/249 (50%), Gaps = 16/249 (6%)

Query: 157 DMSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           +M RR +G+LV    V    +I  + ++ LVN+A   +  M   R  P V  YN +I  L
Sbjct: 195 EMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGL 254

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           C +G    A  LL +M L      P VYT++IL+ ++CK G           ++ EA ++
Sbjct: 255 CIMGQLKDAIGLLHKMILENIN--PTVYTFSILVDAFCKEG-----------KVKEAKNV 301

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           F +M+ K   P++V YN L++G C    + +A  +F+ M + G  P+  +Y+  I  +  
Sbjct: 302 FVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCK 361

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
           +  +D+A+++  +M       P   +Y  +I  LC++GR+  A   + E+ D G  P   
Sbjct: 362 IKMVDEAMKLFEEMH-CKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNII 420

Query: 395 TYKLVCDAL 403
           TY  + DAL
Sbjct: 421 TYNSLLDAL 429



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 18/236 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG      +++ LI    + G  + + + F  + +    PD      +I  LC  G+ +K
Sbjct: 98  NGIASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHK 157

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A    +++   GF+   +  +Y  LI+  CK G QT     + RRI     L RL     
Sbjct: 158 ALHFHDKVLALGFQL--NQVSYRTLINGLCKVG-QTKAALEMLRRI--DGKLVRL----- 207

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
              DVV YN +IDG CK   +  A + + +M  K   P  VTYN+ I    ++ ++  AI
Sbjct: 208 ---DVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAI 264

Query: 343 EMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            ++ KM  +N+N   PT  +++ ++ A C+ G+V EA++    ++     P   TY
Sbjct: 265 GLLHKMILENIN---PTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTY 317



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 100/230 (43%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G    AL    R+     R DV  YN +I+ +C+    N A     +M    
Sbjct: 180 LINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAK- 238

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R  P V TY  LI   C  G           ++ +A  L   M+ +   P V  ++ L+
Sbjct: 239 -RICPTVVTYNTLICGLCIMG-----------QLKDAIGLLHKMILENINPTVYTFSILV 286

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK  +++ A  +F  M KK   PN VTYNS +  Y +VNE++KA  +   M  +  G
Sbjct: 287 DAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQI--G 344

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           V P   SY+ +I   C+   V EA     E+      P   TY  + D L
Sbjct: 345 VAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGL 394



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 13/147 (8%)

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           +V+EA+  F  M   +  PDV  YN +I+ LC+ G  + A  L+ +M   G   PP++ T
Sbjct: 364 MVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRG--QPPNIIT 421

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           Y  L+ + CK        KAI       +H  +        P V  YN LI+G CK+ R+
Sbjct: 422 YNSLLDALCK---NHHVDKAIELLTKLKDHNIQ--------PSVCTYNILINGLCKSGRL 470

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIR 330
           + A ++F+D+   G   +  TYN+ I+
Sbjct: 471 KDAQKVFEDVLVNGYNIDVYTYNTMIK 497



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 15/200 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P +  +  ++ +L +  +++    L  QME  G     ++ T +ILI+ + + G  +   
Sbjct: 67  PSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGI--ASNLVTLSILINCFSQLGHNS--- 121

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                    +  +F  +L KG+ PD +    LI G C    I +AL   D +   G   N
Sbjct: 122 --------LSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLN 173

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           +V+Y + I     V +   A+EM+R++      +     Y  II  +C+   V +A DF 
Sbjct: 174 QVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDV-VMYNTIIDGVCKDKLVNDAFDFY 232

Query: 382 AELVDGGSVPREYTYK-LVC 400
           +E+V     P   TY  L+C
Sbjct: 233 SEMVAKRICPTVVTYNTLIC 252



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 16/135 (11%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           ++VT +S   LI  L + G ++ AL     M      P++  YN +++ALC+  + +KA 
Sbjct: 383 DVVTYNS---LIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAI 439

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            LL +  L      P V TY ILI+  CK G           R+ +A  +F  +L  G+ 
Sbjct: 440 ELLTK--LKDHNIQPSVCTYNILINGLCKSG-----------RLKDAQKVFEDVLVNGYN 486

Query: 285 PDVVAYNCLIDGCCK 299
            DV  YN +I G CK
Sbjct: 487 IDVYTYNTMIKGFCK 501



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            + +M  RG    + T +   L+  L +   V++A+    ++K    +P V  YN++IN 
Sbjct: 406 LIGEMHDRGQPPNIITYN--SLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILING 463

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
           LC+ G    A+ + E + + G+    DVYTY  +I  +CK G
Sbjct: 464 LCKSGRLKDAQKVFEDVLVNGYNI--DVYTYNTMIKGFCKKG 503


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 138/265 (52%), Gaps = 23/265 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F +  +V    + L +++RRG   ++VT S+V   I  L + G + +A+  F  M    C
Sbjct: 189 FCKSRDVGRGLELLGEVTRRGFTPDIVTYSTV---IDGLCKAGRLRDAVDIFEEMS---C 242

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P    YN +I   CR G+ ++A  LL +M     +C PDV TYT L+S++CK G     
Sbjct: 243 APTAITYNSLIGGYCRAGDMDEAIRLLGKM--VDDKCAPDVVTYTTLMSAFCKMG----- 295

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+ +A  LF+ M+     PDVV +  L+DG C   R+E ALEL +++ ++GC P
Sbjct: 296 ------RLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPP 349

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
              TYN  +  Y   N++ KA E++   ++    VP + +Y  ++   C AGR  +A  +
Sbjct: 350 TIYTYNCVVDGYCKANQVRKAEELVADFRSRGF-VPNTVTYNILVAGCCRAGRTDQALQY 408

Query: 381 LAEL-VDGGSVPREYT-YKLVCDAL 403
           L +L  +GG  P     Y ++ DAL
Sbjct: 409 LDQLNSEGGPCPTSVAMYAIILDAL 433



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 140/306 (45%), Gaps = 36/306 (11%)

Query: 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSR--RGNGELVT 168
           GL KA      V+ F      EM+C    I +   N++ G +    DM    R  G++V 
Sbjct: 223 GLCKAGRLRDAVDIF-----EEMSCAPTAITY---NSLIGGYCRAGDMDEAIRLLGKMVD 274

Query: 169 TS------SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
                   + T L+    + G +++A   F +M   +  PDV  +  +++ LC  G    
Sbjct: 275 DKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMED 334

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  LLE++   G  CPP +YTY  ++  YCK             ++ +A  L      +G
Sbjct: 335 ALELLEEITRRG--CPPTIYTYNCVVDGYCK-----------ANQVRKAEELVADFRSRG 381

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDK 340
           FVP+ V YN L+ GCC+  R ++AL+  D +N +G  C  +   Y   +         D 
Sbjct: 382 FVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDD 441

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A++   +M    + VP ++++  ++ ALC+A +  +A + L E++  G  P   T    C
Sbjct: 442 AVQFYEEMIQRGY-VPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGT----C 496

Query: 401 DALNAA 406
           DA+ +A
Sbjct: 497 DAVVSA 502



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 17/234 (7%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           +++T +++ L     V++A      M       +   Y+ +++ LC+    ++A  L+E 
Sbjct: 75  TTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVET 134

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M   G  C P V TY  +I+ +C+            RR+ EA+     M+ +G  PD++ 
Sbjct: 135 MAERG--CAPTVVTYNSIITGFCR-----------ARRVDEAHGFMEQMVAEGCHPDIIT 181

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  LI G CK+  + R LEL  ++ ++G  P+ VTY++ I        +  A+++  +M 
Sbjct: 182 YTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS 241

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                 PT+ +Y  +I   C AG + EA   L ++VD    P   TY  +  A 
Sbjct: 242 C----APTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAF 291



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 111/252 (44%), Gaps = 28/252 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L   G +  AL  + +M      PD   Y  +++ L +      A  +L++M    
Sbjct: 11  VIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKARRLRDAVQVLQEM--VS 67

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R  PD  T T+++ S C           +  R+ +A  L   ML +G   + + Y+ L+
Sbjct: 68  ARHVPDNTTLTVVVQSLC-----------LGDRVDDARELVEEMLHRGMAANAITYSALV 116

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK  R++ A+ L + M ++GC P  VTYNS I  +     +D+A   M +M  +  G
Sbjct: 117 DGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQM--VAEG 174

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
             P   +YT +I   C++  V    + L E+   G  P   TY  V D L  A       
Sbjct: 175 CHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKA------- 227

Query: 414 DGLRKRIRDGIE 425
                R+RD ++
Sbjct: 228 ----GRLRDAVD 235



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 17/200 (8%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA--LATFYRMKQFRCRPDVYAYNV 209
            + L++++RRG    + T +  C++    +   V +A  L   +R + F   P+   YN+
Sbjct: 336 LELLEEITRRGCPPTIYTYN--CVVDGYCKANQVRKAEELVADFRSRGFV--PNTVTYNI 391

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           ++   CR G  ++A   L+Q+   G  CP  V  Y I++ + C+ G           R  
Sbjct: 392 LVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDG-----------RTD 440

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A   +  M+ +G+VP    +  ++   CK ++ ++A EL ++M K G  P   T ++ +
Sbjct: 441 DAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVV 500

Query: 330 RYYSVVNEIDKAIEMMRKMQ 349
             Y     I KA E+  +++
Sbjct: 501 SAYCRAGMIQKADELASELR 520



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 2/123 (1%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P  + +N +I G C+  R+  AL ++  MN     P+ +TY   +   S    +  A+++
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKARRLRDAVQV 61

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           +++M +  H VP +++ T ++ +LC   RV +AR+ + E++  G      TY  + D L 
Sbjct: 62  LQEMVSARH-VPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLC 120

Query: 405 AAE 407
             E
Sbjct: 121 KCE 123


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 149/301 (49%), Gaps = 21/301 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           N +T   +  VF R N+++     L+ M + G        S   +I    + G + EA  
Sbjct: 369 NAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYST--IISGFCKAGKLREAHD 426

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
              +M +  CRPDV   + +I+ALC+    + A+ LL +M + G  C PDV  Y+ILI +
Sbjct: 427 LLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELL-RMSI-GMDCAPDVVAYSILIHA 484

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            CK            +R+ EA     +M+     PDVV YN ++DG CK+ RI  A  LF
Sbjct: 485 LCK-----------AKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLF 533

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
           D M   G +P+ VTY+  I  +   N +D A +M+ +M+     VP   +Y+ +I+ LC+
Sbjct: 534 DRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAK-CVPDVVTYSALINGLCK 592

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLLDDGLRKR--IRDGIE 425
           AG V +A D   E++  G  P   TY  + D L   N  E+ + + + +RK+    D I 
Sbjct: 593 AGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSIT 652

Query: 426 Y 426
           Y
Sbjct: 653 Y 653



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/244 (34%), Positives = 124/244 (50%), Gaps = 14/244 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L +   + EA +    M + RC PDV  YN V++ LC+    N A  L ++M   G
Sbjct: 481 LIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAG 540

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDV TY+I+I S+CK        K + R           M     VPDVV Y+ LI
Sbjct: 541 VM--PDVVTYSIVIHSFCKDNNLDSAFKMLER-----------MKEAKCVPDVVTYSALI 587

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G CK   +++A ++F +M   GC PN VTYN+ I     +N++++A EM+  M+     
Sbjct: 588 NGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRK-QSC 646

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
            P S +YT +I+ LC A R+ EA   L E+ D G +P   TY  +  AL       L++ 
Sbjct: 647 TPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQ 706

Query: 415 GLRK 418
            L++
Sbjct: 707 LLKE 710



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 156/373 (41%), Gaps = 70/373 (18%)

Query: 90   IANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVK 149
            I +NV++ G  + R        L+ A E +  +E       +  T   +     +   V 
Sbjct: 913  ILHNVVIKGLCSARK-------LDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVD 965

Query: 150  GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
                 ++DM  +G    V T S   L+  L + G ++EA A   RM +  C P++  YN 
Sbjct: 966  DACRLVEDMVSKGCSPNVVTYSS--LLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNT 1023

Query: 210  VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS------------------- 250
            +I+  C++G  ++A  LLE+M   G  C P+V TYT+L+ +                   
Sbjct: 1024 IIDGHCKLGRIDEAYHLLEEMVDGG--CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVE 1081

Query: 251  ----------------YCKYG------------MQTGCRKAI------------RRRIWE 270
                            +CK              +Q GC   +              ++ E
Sbjct: 1082 KGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHE 1141

Query: 271  ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
               L   ML    VPD+V +N +ID  CKTYR++ A ELF+ + + GC PN VTYNS + 
Sbjct: 1142 GVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVH 1201

Query: 331  YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                    D+A  ++R+M       P   +Y  +I  LC++ RV  A     +++  G  
Sbjct: 1202 GLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLA 1261

Query: 391  PREYTYKLVCDAL 403
            P + TY +V  +L
Sbjct: 1262 PDDVTYSIVISSL 1274



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 158/363 (43%), Gaps = 34/363 (9%)

Query: 56   PRFFFQSPRSIGRQTGFRHRTPLRQRILKKE-AYNIANNVL--VLGPAAYRDPQKVTLGL 112
            PR       ++  Q GF H+     RIL    A+  A   L    G        KV  G+
Sbjct: 765  PRPHQYRVTAVATQGGFHHKIV---RILNSRFAWEYAETALERFTGKLTTTVVGKVLQGV 821

Query: 113  ---NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTT 169
               + A  F+ W      + H+  TC  +     R    K      ++       +L  +
Sbjct: 822  RNGDAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRN-------KLCCS 874

Query: 170  SSV---TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
             ++   T LI  L   G +  A      M +     +V  +NVVI  LC     + A  L
Sbjct: 875  PNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALEL 934

Query: 227  LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
             ++ME  G  CPPDV+TY+ ++ S  K G           ++ +A  L   M+ KG  P+
Sbjct: 935  FKEMEESG-SCPPDVFTYSTIVDSLVKSG-----------KVDDACRLVEDMVSKGCSPN 982

Query: 287  VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            VV Y+ L+ G CK  +++ A  L   M + GC PN VTYN+ I  +  +  ID+A  ++ 
Sbjct: 983  VVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLE 1042

Query: 347  KMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
            +M  ++ G  P   +YT ++ A C+ G+  +A   +  +V+ G VP  +TY  + D    
Sbjct: 1043 EM--VDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCK 1100

Query: 406  AEE 408
             +E
Sbjct: 1101 KDE 1103



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 145/312 (46%), Gaps = 26/312 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F R   +   ++   +M+R+G   L   + V   +++ L + G  ++A+  F  M +  C
Sbjct: 171 FIRAGKILPAYELFDEMNRKG---LKAHAGVHKSILRGLCDAGQCSDAVLHFREMSK-TC 226

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD   YN +IN L +    + A  LLE+M   GF   P+V++Y  ++  +CK       
Sbjct: 227 PPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGF--APNVFSYNTVLHGFCK------- 277

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  L   M+ +G  PDVV+Y  +I+G CK  +++ A  + D M ++GC P
Sbjct: 278 ----ANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQP 333

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N +TY + +  +  V ++D A+E++RKM    +  P + +Y  I+H  C    +  A   
Sbjct: 334 NVITYGTLVDGFCRVGDLDGAVELVRKMTERGYR-PNAITYNNIMHVFCRRNDMERAHQV 392

Query: 381 LAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIRDGI---EYRFRQVMK 433
           L  ++  G  P    Y  +    C A    E   LL+  +R+  R  +         + K
Sbjct: 393 LQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCK 452

Query: 434 VKPIMKHKELLK 445
              I   +ELL+
Sbjct: 453 AAAIDSAQELLR 464



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 136/266 (51%), Gaps = 19/266 (7%)

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           ++MS+    + VT ++   +I  L +   +++A+     M      P+V++YN V++  C
Sbjct: 220 REMSKTCPPDSVTYNT---MINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFC 276

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
           +      A +LLEQM   G  CPPDV +YT +I+  CK             ++ EA  + 
Sbjct: 277 KANRVENALWLLEQMVTRG--CPPDVVSYTTVINGLCKLD-----------QVDEACRVM 323

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             M+ +G  P+V+ Y  L+DG C+   ++ A+EL   M ++G  PN +TYN+ +  +   
Sbjct: 324 DKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRR 383

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
           N++++A ++++ M  +  G P  + +Y+ II   C+AG++ EA D L +++  G  P   
Sbjct: 384 NDMERAHQVLQMM--IQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVA 441

Query: 395 TYKLVCDALNAAEEPSLLDDGLRKRI 420
               + DAL  A       + LR  I
Sbjct: 442 CLSTLIDALCKAAAIDSAQELLRMSI 467



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 101/198 (51%), Gaps = 16/198 (8%)

Query: 200  CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
            C PD+  YN VI+ LC+    ++A  L  QM   G    PD  TY+I+ISS CK+     
Sbjct: 1225 CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL--APDDVTYSIVISSLCKW----- 1277

Query: 260  CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  R + EAN++  LML  GF P  + Y  LIDG CKT  +++ALE+   +  KG  
Sbjct: 1278 ------RFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSY 1331

Query: 320  PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEAR 378
            P+ VT++ FI + S    + +A E++  M  L  G VP + +Y  ++   C+A    +A 
Sbjct: 1332 PDVVTFSIFIDWLSKRGRLRQAGELLETM--LRAGLVPDTVTYNTLLKGFCDASLTEDAV 1389

Query: 379  DFLAELVDGGSVPREYTY 396
            D    +   G  P   TY
Sbjct: 1390 DLFEVMRQCGCEPDNATY 1407



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 97/194 (50%), Gaps = 13/194 (6%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G +    + + +I    ++  ++ A     RMK+ +C PDV  Y+ +IN LC+ G  
Sbjct: 537 RAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTV 596

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           +KA  + ++M   G  C P++ TY  LI   CK             ++ +A  +  +M  
Sbjct: 597 DKAFDVFQEM--LGCGCAPNLVTYNTLIDGLCKI-----------NKVEQAAEMLEIMRK 643

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +   PD + Y CLI+G C   R+E A  +  +M  KGC+P+R+TY + +R     N ++ 
Sbjct: 644 QSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLEL 703

Query: 341 AIEMMRKMQNLNHG 354
             +++++M+    G
Sbjct: 704 VEQLLKEMEATEEG 717



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 146/324 (45%), Gaps = 40/324 (12%)

Query: 112  LNKATEFYHWVERFFDFF--HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGN-GELVT 168
            L +  E YH +E   D     N +T   +   F +    +     ++ M  +G    L T
Sbjct: 1031 LGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFT 1090

Query: 169  TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
             +S   L+ +  ++  V  A      M Q  C P+V +YN VI  LC+    ++   LLE
Sbjct: 1091 YNS---LLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLE 1147

Query: 229  QMELPGFRCPPDVYTYTILISSYCK-------YGM-----QTGCRKAI------------ 264
            QM      C PD+ T+  +I + CK       Y +     ++GC   +            
Sbjct: 1148 QM--LSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 1205

Query: 265  RRRIWEANHLFRLMLFK-GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
             RR  +A +L R M  K G  PD++ YN +IDG CK+ R++RA +LF  M   G  P+ V
Sbjct: 1206 SRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDV 1265

Query: 324  TYNSFIRY---YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
            TY+  I     +  ++E +  +E+M K    N   P + +Y  +I   C+ G + +A + 
Sbjct: 1266 TYSIVISSLCKWRFMDEANNVLELMLK----NGFDPGAITYGTLIDGFCKTGNLDKALEI 1321

Query: 381  LAELVDGGSVPREYTYKLVCDALN 404
            L  L+  GS P   T+ +  D L+
Sbjct: 1322 LQLLLSKGSYPDVVTFSIFIDWLS 1345



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 105/233 (45%), Gaps = 40/233 (17%)

Query: 154  FLKDMSRRG--NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
             L++M+R+   + +++T ++V   I  L +   V+ A   F +M      PD   Y++VI
Sbjct: 1215 LLREMTRKQGCSPDIITYNTV---IDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVI 1271

Query: 212  NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTG 259
            ++LC+    ++A  +LE M   GF   P   TY  LI  +CK G            +  G
Sbjct: 1272 SSLCKWRFMDEANNVLELMLKNGF--DPGAITYGTLIDGFCKTGNLDKALEILQLLLSKG 1329

Query: 260  CRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
                +            R R+ +A  L   ML  G VPD V YN L+ G C     E A+
Sbjct: 1330 SYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAV 1389

Query: 308  ELFDDMNKKGCIPNRVTYNSFI-------RYYSVVNEIDKAIEMMRKMQNLNH 353
            +LF+ M + GC P+  TY + +        Y  ++ E+ K+  M+     LNH
Sbjct: 1390 DLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKS--MVDTGFKLNH 1440



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 35/168 (20%)

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG------------ 317
           +A+ LFR  +   +  D V Y+ LI G  +  +I  A ELFD+MN+KG            
Sbjct: 144 QAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSIL 203

Query: 318 ----------------------CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
                                 C P+ VTYN+ I   S  + +D AI ++ +M + N   
Sbjct: 204 RGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVD-NGFA 262

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           P   SY  ++H  C+A RV  A   L ++V  G  P   +Y  V + L
Sbjct: 263 PNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVINGL 310



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 107/270 (39%), Gaps = 16/270 (5%)

Query: 142  FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
            F +  N+    + L+ +  +G+   V T S+   I  L + G + +A      M +    
Sbjct: 1309 FCKTGNLDKALEILQLLLSKGSYPDVVTFSI--FIDWLSKRGRLRQAGELLETMLRAGLV 1366

Query: 202  PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK----YGMQ 257
            PD   YN ++   C       A  L E M   G  C PD  TYT L+           + 
Sbjct: 1367 PDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCG--CEPDNATYTTLVGHLVDKKSYKDLL 1424

Query: 258  TGCRKAIRRRIWEANHLFRLMLFKGF-VPDVVAYNC-LIDGCCKTYRIERALELFDDMNK 315
                K++    ++ NH     L     V   V   C ++D   K    + A ++F+ M++
Sbjct: 1425 AEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQ 1484

Query: 316  KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
            +    N V +++ +  Y    + ++A  + R M  L    P + ++  ++   C AG + 
Sbjct: 1485 R----NVVLWSAMLGVYVFHKQEEQAFGLWRVM-GLEGVEPDAVTFLSLLTMCCHAGLLD 1539

Query: 376  EARD-FLAELVDGGSVPREYTYKLVCDALN 404
             A D F++   D G  P    +  V D L 
Sbjct: 1540 AAVDEFVSISRDYGLEPGVDHFSCVIDLLG 1569


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/294 (31%), Positives = 147/294 (50%), Gaps = 20/294 (6%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL-VTTSSV 172
           KA  F++W+     F HN  T   M  +  R  N+    +FL  + +R NGE+ +     
Sbjct: 100 KAFLFFNWIHEK-GFSHNPQTYFIMLEILGREKNLNIARNFLYSIEKRSNGEVKLEDRFF 158

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             LI+  GE GL  E++  F  MK     P V  +N V+  L + G  N A+ + ++M L
Sbjct: 159 NSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEM-L 217

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
             +   PD YTY ILI  +CK  M           + E  + F+ M      PDVV YN 
Sbjct: 218 KTYGVKPDTYTYNILIRGFCKNSM-----------VDEGFYFFKEMTSFDCDPDVVTYNT 266

Query: 293 LIDGCCKTYRIERALELFDDMNK--KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           L+DG C+  +I+ A  L + M+K  K   P+ VTY + IR Y    E+D+A++++ +M  
Sbjct: 267 LVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMN- 325

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV-DGGSVPREYTYKLVCDA 402
              G+ P   +Y  +I  LCEA +  + ++ L ++  DGGS+P   T+  + ++
Sbjct: 326 -GRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINS 378



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 116/287 (40%), Gaps = 21/287 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R   +K   + +  MS++         + T LI+    +  V+EAL     M     +
Sbjct: 271 LCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLK 330

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  YN +I  LC    ++K + +LEQM+  G    PD  T+  LI+S+C  G      
Sbjct: 331 PNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSI-PDACTFNTLINSHCCAG------ 383

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK----- 316
                 + EA  +F  M       D  +Y+ LI   C+     +A  LFD++ +K     
Sbjct: 384 -----NLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLS 438

Query: 317 --GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
             G  P   +Y    +Y     +  KA  ++R++  +  G     SY  +I   C+ G  
Sbjct: 439 SYGPKPLAASYKCMFQYLCENGKTKKAERVLRQL--MKRGTQDPLSYQIVILGHCKEGSY 496

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
                 L  ++    +P    Y  + D     ++P L  + L K ++
Sbjct: 497 ENGYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLK 543



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 129/307 (42%), Gaps = 48/307 (15%)

Query: 148 VKGL-----WDFLKDM--SRRGNGELVTTS-SVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           +KGL     WD +K++    +G+G  +  + +   LI      G ++EA   F  MK+  
Sbjct: 340 IKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLE 399

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQM-----ELPGFRCPPDVYTYTILISSYCKY 254
              D  +Y+V+I  LC+ G++ KA  L +++      L  +   P   +Y  +    C+ 
Sbjct: 400 VSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPLAASYKCMFQYLCEN 459

Query: 255 G------------MQTGCRKAIRRRIWEANH-----------LFRLMLFKGFVPDVVAYN 291
           G            M+ G +  +  +I    H           L   ML + F+PD+  Y+
Sbjct: 460 GKTKKAERVLRQLMKRGTQDPLSYQIVILGHCKEGSYENGYGLLVWMLRRDFLPDIDIYD 519

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY---SVVNEIDKAIEMMRKM 348
            LIDG  +  +   A E  + M K    P   T++S +        V+E    I MM + 
Sbjct: 520 YLIDGFLRKDKPLLAKETLEKMLKSSYKPQTSTWHSILNRLLEQGCVHESAGVIVMMLE- 578

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDF-LAELV--DGGSVPREYTYKLVCDALNA 405
           +N+   +  S   T  +  L + G  L+ + F + EL+  +G  V  +   + +C+   A
Sbjct: 579 RNIRQNINFS---TKCLQLLFDRG--LQDKAFKITELIYKNGFCVKMDEVVQFLCNKRRA 633

Query: 406 AEEPSLL 412
            E   LL
Sbjct: 634 LEACKLL 640



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           +N LI    +    + +++LF++M   G  P  VT+NS +         + A E+  +M 
Sbjct: 158 FNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEML 217

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
                 P + +Y  +I   C+   V E   F  E+      P   TY  + D L  A + 
Sbjct: 218 KTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKI 277

Query: 410 SL---LDDGLRKRIRD 422
            +   L +G+ K+ +D
Sbjct: 278 KVAHNLVNGMSKKCKD 293


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 143/276 (51%), Gaps = 29/276 (10%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           +S+  +  +VT SS   L+  L + G ++EA A   RM +  C P++  YN +I+  C++
Sbjct: 247 VSKGCSPNVVTYSS---LLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKL 303

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G  ++A  LLE+M   G  C P+V TYT+L+ ++CK G           +  +A  L  +
Sbjct: 304 GRIDEAYHLLEEMVDGG--CQPNVVTYTVLLDAFCKCG-----------KAEDAIGLVEV 350

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+ KG+VP++  YN L+D  CK   +ERA +L   M +KGC+PN V+YN+ I       +
Sbjct: 351 MVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATK 410

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           + + + ++ +M + N+ VP   ++  II A+C+  RV  A +    + + G  P   TY 
Sbjct: 411 VHEGVLLLEQMLS-NNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYN 469

Query: 398 LVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMK 433
                       SL+    + R  D  EY  R++ +
Sbjct: 470 ------------SLVHGLCKSRRFDQAEYLLREMTR 493



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 140/303 (46%), Gaps = 52/303 (17%)

Query: 142 FARGNNVK-GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F + N V+  LW  L+ M  RG    V   S T +I  L +   V+EA     +M Q  C
Sbjct: 89  FCKANRVENALW-LLEQMVMRGCPPDVV--SYTTVINGLCKLDQVDEACRVMDKMIQRGC 145

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR------------------------ 236
           +P+V  Y  +++  CRVG+ + A  L+ +M   G+R                        
Sbjct: 146 QPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQ 205

Query: 237 ----------CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
                     CPPDV+TY+ ++ S  K G           ++ +A  L   M+ KG  P+
Sbjct: 206 LFKEMEESGSCPPDVFTYSTIVDSLVKSG-----------KVDDACRLVEAMVSKGCSPN 254

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           VV Y+ L+ G CK  +++ A  L   M + GC PN VTYN+ I  +  +  ID+A  ++ 
Sbjct: 255 VVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLE 314

Query: 347 KMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           +M  ++ G  P   +YT ++ A C+ G+  +A   +  +V+ G VP  +TY  + D    
Sbjct: 315 EM--VDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCK 372

Query: 406 AEE 408
            +E
Sbjct: 373 KDE 375



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++ L + G  ++A+  F  M +  C PD   YN +IN L +    + A  LLE+M   G
Sbjct: 16  ILRGLCDAGQCSDAVLHFREMSK-TCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNG 74

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F   P+V++Y  ++  +CK             R+  A  L   M+ +G  PDVV+Y  +I
Sbjct: 75  F--APNVFSYNTVLHGFCK-----------ANRVENALWLLEQMVMRGCPPDVVSYTTVI 121

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G CK  +++ A  + D M ++GC PN +TY + +  +  V ++D A+E++RKM    + 
Sbjct: 122 NGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYR 181

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE-YTYKLVCDAL 403
            P + +Y  I+H LC   ++  A     E+ + GS P + +TY  + D+L
Sbjct: 182 -PNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSL 230



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 102/198 (51%), Gaps = 16/198 (8%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C PD+  YN VI+ LC+    ++A  L  QM   G    PD  TY+I+ISS CK+     
Sbjct: 497 CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL--APDDVTYSIVISSLCKW----- 549

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                 R + EAN++  LML  GF P  + Y  LIDG CKT  +++ALE+   +  KG  
Sbjct: 550 ------RFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSY 603

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEAR 378
           P+ VT++ FI + S    + +A E++  M  L  G VP + +Y  ++   C+A R  +A 
Sbjct: 604 PDVVTFSIFIDWLSKRGRLRQAGELLETM--LRAGLVPDTVTYNTLLKGFCDASRTEDAV 661

Query: 379 DFLAELVDGGSVPREYTY 396
           D    +   G  P   TY
Sbjct: 662 DLFEVMRQCGCEPDNATY 679



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 122/242 (50%), Gaps = 17/242 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L +   +++A+     M      P+V++YN V++  C+      A +LLEQM + G
Sbjct: 50  MINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRG 109

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             CPPDV +YT +I+  CK             ++ EA  +   M+ +G  P+V+ Y  L+
Sbjct: 110 --CPPDVVSYTTVINGLCKL-----------DQVDEACRVMDKMIQRGCQPNVITYGTLV 156

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG C+   ++ A+EL   M ++G  PN +TYN+ +       ++D A+++ ++M+     
Sbjct: 157 DGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSC 216

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPS 410
            P   +Y+ I+ +L ++G+V +A   +  +V  G  P   TY      +C A    E  +
Sbjct: 217 PPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATA 276

Query: 411 LL 412
           LL
Sbjct: 277 LL 278



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 146/324 (45%), Gaps = 40/324 (12%)

Query: 112 LNKATEFYHWVERFFDFF--HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGN-GELVT 168
           L +  E YH +E   D     N +T   +   F +    +     ++ M  +G    L T
Sbjct: 303 LGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFT 362

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
            +S   L+ +  ++  V  A      M Q  C P+V +YN VI  LC+    ++   LLE
Sbjct: 363 YNS---LLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLE 419

Query: 229 QMELPGFRCPPDVYTYTILISSYCK-------YGM-----QTGCRKAI------------ 264
           QM      C PD+ T+  +I + CK       Y +     ++GC   +            
Sbjct: 420 QM--LSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 477

Query: 265 RRRIWEANHLFRLMLFK-GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
            RR  +A +L R M  K G  PD++ YN +IDG CK+ R++RA +LF  M   G  P+ V
Sbjct: 478 SRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDV 537

Query: 324 TYNSFIRY---YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           TY+  I     +  ++E +  +E+M K    N   P + +Y  +I   C+ G + +A + 
Sbjct: 538 TYSIVISSLCKWRFMDEANNVLELMLK----NGFDPGAITYGTLIDGFCKTGNLDKALEI 593

Query: 381 LAELVDGGSVPREYTYKLVCDALN 404
           L  L+  GS P   T+ +  D L+
Sbjct: 594 LQLLLSKGSYPDVVTFSIFIDWLS 617



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 40/233 (17%)

Query: 154 FLKDMSRRG--NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
            L++M+R+   + +++T ++V   I  L +   V+ A   F +M      PD   Y++VI
Sbjct: 487 LLREMTRKQGCSPDIITYNTV---IDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVI 543

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTG 259
           ++LC+    ++A  +LE M   GF   P   TY  LI  +CK G            +  G
Sbjct: 544 SSLCKWRFMDEANNVLELMLKNGF--DPGAITYGTLIDGFCKTGNLDKALEILQLLLSKG 601

Query: 260 CRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
               +            R R+ +A  L   ML  G VPD V YN L+ G C   R E A+
Sbjct: 602 SYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAV 661

Query: 308 ELFDDMNKKGCIPNRVTYNSFI-------RYYSVVNEIDKAIEMMRKMQNLNH 353
           +LF+ M + GC P+  TY + +        Y  ++ E+ K+  M+     LNH
Sbjct: 662 DLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKS--MVDTGFKLNH 712


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/257 (33%), Positives = 131/257 (50%), Gaps = 17/257 (6%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R NG +    +  CLI  LG+ G ++EA   F  M++  C PD + YN +I  L +VG  
Sbjct: 106 RDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRS 165

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            KA  LLE+ME  G  CPPDV TY+ LI+   K G              +A  LF+ M  
Sbjct: 166 QKAMELLEEMERHG--CPPDVMTYSSLITGLGKDGETV-----------KAFKLFQEMKR 212

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G  PD + +  L+D   K  R++ ALEL D+M ++G  P  VTYN+ I  +  V ++ +
Sbjct: 213 RGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVE 272

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A  ++ +M+  N   P   +Y+ +I  L +A ++ EA   L ++   G  P   TY  + 
Sbjct: 273 AYNLLDEMKR-NGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLI 331

Query: 401 DALNAAEEPSLLDDGLR 417
           + L  A    LL+D  R
Sbjct: 332 NGLGKA---GLLNDAGR 345



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 120/226 (53%), Gaps = 14/226 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S +CLI  LG  G    AL     M+   C+P+++ YN +++ L + G F++A  LL +M
Sbjct: 46  SYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEM 105

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G  C PDV TY  LIS+  K G           R+ EA  LF  M  +G VPD   Y
Sbjct: 106 RDNG--CVPDVRTYNCLISTLGKAG-----------RLSEAFTLFAEMRERGCVPDTFTY 152

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI G  K  R ++A+EL ++M + GC P+ +TY+S I       E  KA ++ ++M+ 
Sbjct: 153 NSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKR 212

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
                P S ++T ++ AL +AGRV +A + L E+ + G  P   TY
Sbjct: 213 RGR-KPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTY 257



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 123/255 (48%), Gaps = 20/255 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L + G   EA   F  +K  +  PDV +Y+ +IN+L R G +  A  ++ +M+  G
Sbjct: 15  LLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKG 74

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+++TY  L+    K G           +  EA  L   M   G VPDV  YNCLI
Sbjct: 75  --CKPNLWTYNTLVDCLGKAG-----------QFDEALRLLAEMRDNGCVPDVRTYNCLI 121

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
               K  R+  A  LF +M ++GC+P+  TYNS I     V    KA+E++ +M+   HG
Sbjct: 122 STLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEME--RHG 179

Query: 355 VPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA----EEP 409
            P    +Y+ +I  L + G  ++A     E+   G  P   T+  + DAL  A    +  
Sbjct: 180 CPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDAL 239

Query: 410 SLLDDGLRKRIRDGI 424
            LLD+   + ++ G+
Sbjct: 240 ELLDEMKERGVKPGV 254



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 125/270 (46%), Gaps = 47/270 (17%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI  LG+ GL+N+A   F RMK   C PDV  Y+ +I AL +      A  L E
Sbjct: 324 TITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFE 383

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +ME  G +  PD++TY  +I+   K G           ++ +A+ LF  M  KG  PDV+
Sbjct: 384 EMESVGIQ--PDLFTYCSIITVLGKAG-----------QVDDADRLFSEMRGKGLSPDVI 430

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA------- 341
            YN  ++   +  R + A ++F+DM + G +P+  TY++ +   S   E+D A       
Sbjct: 431 TYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKEL 490

Query: 342 ---------------IEMMRKMQNLNHG------------VPTSSSYTPIIHALCEAGRV 374
                          +E++    N++               P +SSY  +I AL +AGRV
Sbjct: 491 IEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRV 550

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDALN 404
            EA + L +L + G  P   +Y  +  AL 
Sbjct: 551 SEAFNTLEDLKEQGGKPDIVSYSSLISALG 580



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 136/300 (45%), Gaps = 25/300 (8%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
              +   V    + L +M  RG    V T +   LI   G+ G + EA      MK+  C
Sbjct: 228 ALGKAGRVDDALELLDEMKERGVKPGVVTYNA--LIAGFGKVGDLVEAYNLLDEMKRNGC 285

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDV  Y+ +I  L +    ++A  +L++ME  G  CPPD  TY  LI+   K G+    
Sbjct: 286 KPDVVTYSCLITGLIKASQLDEACQVLKKMEKEG--CPPDTITYNTLINGLGKAGL---- 339

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  + +A  LF  M  KG  PDVV Y+ LI    K  R+E A  LF++M   G  P
Sbjct: 340 -------LNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQP 392

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +  TY S I       ++D A  +  +M+      P   +Y   +++L   GR  EAR  
Sbjct: 393 DLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLS-PDVITYNAFLNSLGRGGRFKEARKI 451

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG---LRKRIRDGIEY---RFRQVMKV 434
             ++ + G +P   TY  +   L+  +E   +DD    L++ I  G  +   +F + +++
Sbjct: 452 FEDMKESGLLPDVATYDALLLGLSKTKE---VDDACGLLKELIEQGCAFDSLKFDECLEI 508



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 126/265 (47%), Gaps = 19/265 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L++M R G    V T S   LI  LG++G   +A   F  MK+   +PD   +  +++
Sbjct: 170 ELLEEMERHGCPPDVMTYS--SLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMD 227

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           AL + G  + A  LL++M+  G +  P V TY  LI+ + K G            + EA 
Sbjct: 228 ALGKAGRVDDALELLDEMKERGVK--PGVVTYNALIAGFGKVG-----------DLVEAY 274

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
           +L   M   G  PDVV Y+CLI G  K  +++ A ++   M K+GC P+ +TYN+ I   
Sbjct: 275 NLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGL 334

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
                ++ A  +  +M++     P   +Y+ +I AL +A RV  A     E+   G  P 
Sbjct: 335 GKAGLLNDAGRLFDRMKSKGCN-PDVVTYSTLITALGKAARVESACVLFEEMESVGIQPD 393

Query: 393 EYTYKLVCDALNAAEEPSLLDDGLR 417
            +TY   C  +    +   +DD  R
Sbjct: 394 LFTY---CSIITVLGKAGQVDDADR 415



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 29/223 (13%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I VLG+ G V++A   F  M+     PDV  YN  +N+L R G F +AR + E M+  G
Sbjct: 400 IITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESG 459

Query: 235 FRCPPDVYTYTILISSYCKYG------------MQTGCRKAIRR------------RIWE 270
               PDV TY  L+    K              ++ GC     +             + E
Sbjct: 460 LL--PDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDE 517

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A+ L +    KG  P   +YN LID   K  R+  A    +D+ ++G  P+ V+Y+S I 
Sbjct: 518 AHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLIS 577

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAG 372
                 +ID A E++ +M     G+  S  SY+ ++  L + G
Sbjct: 578 ALGQTGQIDTAFELLEEMS--KRGLKLSPRSYSNLVRKLQDWG 618



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 37/153 (24%)

Query: 280 FKGF-VPDVVAYN-----------------------------------CLIDGCCKTYRI 303
            KGF  P+VV YN                                   CLI+   +  + 
Sbjct: 1   MKGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKW 60

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           E ALE+  +M  KGC PN  TYN+ +       + D+A+ ++ +M++ N  VP   +Y  
Sbjct: 61  EAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRD-NGCVPDVRTYNC 119

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +I  L +AGR+ EA    AE+ + G VP  +TY
Sbjct: 120 LISTLGKAGRLSEAFTLFAEMRERGCVPDTFTY 152


>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
 gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
          Length = 603

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 125/243 (51%), Gaps = 14/243 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G V +A A    M    C PD  +Y + I AL  +G   +A  + E M   G  C PD++
Sbjct: 317 GKVEKAFAVMEEMADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKG--CKPDMH 374

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY I+I ++CK G               A H+ RLM      P+   Y  ++DG  K+ R
Sbjct: 375 TYGIIIDNFCKEGSMAA-----------ATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSR 423

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           +E ALEL+  + K G +P+ VTYN+ I     + ++D+A+E++R+MQ     + P+  +Y
Sbjct: 424 LEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTY 483

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
           + IIH L + G    A D LAE++D G +P  +TY  +   L  A + S   + L + ++
Sbjct: 484 SMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLK 543

Query: 422 DGI 424
            GI
Sbjct: 544 AGI 546



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 135/270 (50%), Gaps = 20/270 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T S T  I+ L   G   EA   F  M +  C+PD++ Y ++I+  C+ G+   A  +L 
Sbjct: 338 TISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLR 397

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M+    +  P+ Y YT+++  + K             R+ EA  L++ +L  G +P  V
Sbjct: 398 LMDKAAVK--PNRYIYTMIMDGFVKSS-----------RLEEALELYQRILKDGILPSTV 444

Query: 289 AYNCLIDGCCKTYRIERALELFDDMN--KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            YN +I+  CK  +++ ALEL  +M   K+   P+ VTY+  I     V   ++A +++ 
Sbjct: 445 TYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLA 504

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           +M + N  +P   +YT +I  L  AG+V  A + L E++  G  P ++TY  +   L  +
Sbjct: 505 EMID-NGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRS 563

Query: 407 EEPSLLDDGLRKRIRDGI---EYRFRQVMK 433
           +  +   D L++ +R+G    E+ F+ V K
Sbjct: 564 DVDAAW-DLLQEMMRNGHTPNEFTFKAVEK 592



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 127/322 (39%), Gaps = 54/322 (16%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A  FYHW      F H   T   + +   RG ++     F +      N      SS   
Sbjct: 79  ALGFYHWAATRPGFSHTLFTRNSLLLALVRGGHLSDALGFFQSSISEPN-----VSSFNI 133

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L++            A    MK      +   + V+++ALC   + +KA      +  P 
Sbjct: 134 LLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVS-PN 192

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +C P ++TYT+L+   CK             ++  A  +F  M+ KG+ PD++AY+ LI
Sbjct: 193 -KCEPTLFTYTVLVDGLCK-----------AHKVERACDVFEEMIRKGYKPDIIAYSSLI 240

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR------------------------ 330
           DG  K  R++ A +L D M  +G  P  V Y S +                         
Sbjct: 241 DGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLR 300

Query: 331 ----YYSVV-------NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
                YS +        +++KA  +M +M + +   P + SYT  I AL   GR  EA  
Sbjct: 301 PRVDTYSFIVTGYIGMGKVEKAFAVMEEMADRDCA-PDTISYTMFIEALYSIGRREEAEK 359

Query: 380 FLAELVDGGSVPREYTYKLVCD 401
               +V+ G  P  +TY ++ D
Sbjct: 360 VFETMVEKGCKPDMHTYGIIID 381



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 1/122 (0%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+V ++N L+ G       E    L  +M  +G   N  T+   +       ++DKA+  
Sbjct: 126 PNVSSFNILLRGFAARDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSY 185

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
              +   N   PT  +YT ++  LC+A +V  A D   E++  G  P    Y  + D L+
Sbjct: 186 FNSVSP-NKCEPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLIDGLS 244

Query: 405 AA 406
            A
Sbjct: 245 KA 246



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 14/144 (9%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L++M RR      +  + + +I  LG+ G+   A      M      PD + Y  +I 
Sbjct: 464 ELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQ 523

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            L   G  ++A  LLE+M   G    PD +TY  L+   C+  +            W+  
Sbjct: 524 TLAGAGKVSRAMELLEEMLKAGIF--PDDHTYGTLVQILCRSDVDAA---------WD-- 570

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDG 296
            L + M+  G  P+   +  +  G
Sbjct: 571 -LLQEMMRNGHTPNEFTFKAVEKG 593


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 137/282 (48%), Gaps = 26/282 (9%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  I+ A  +NV     F + + R     +VT S+   LI  L +   ++EAL    +
Sbjct: 519 CKEQRILDA--HNV-----FKRALERGCRPNVVTYST---LIDGLSKMAKMDEALQLLAK 568

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M +  CR +   Y+ V++ L +VG    A  +L QM   G  C PD  TY  LI  + K 
Sbjct: 569 MVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAG--CLPDAVTYNTLIDGFFK- 625

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                     R+R+ EA  L R ML  GF P VV Y  L  G C++ R + A+E+ D M 
Sbjct: 626 ----------RQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMA 675

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
            +GC PN +TY+S +        + +A+    KM       P   +Y+ +I  LC+AGR+
Sbjct: 676 ARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRI 735

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            EA +FL  ++  G +P   T+ ++   +N   +   +D GL
Sbjct: 736 DEAYEFLERMIRAGRIPDVVTFSIL---INGLCDAGRIDTGL 774



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 32/266 (12%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVVINALC 215
           ++ RR  G      + + LI+ L   G VN+A   + RM       P+ + Y  ++  LC
Sbjct: 369 ELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLC 428

Query: 216 RVGNFNKARFLLEQMELPGFR-------------------CPPDVYTYTILISSYCKYGM 256
           + G+  +     EQM    +R                   C P + TY  L++   K GM
Sbjct: 429 KAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGM 488

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                      + +A  L   M+  G  PDV+ +N ++DG CK  RI  A  +F    ++
Sbjct: 489 -----------VRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALER 537

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           GC PN VTY++ I   S + ++D+A++++ KM  L     T  +Y+ ++  L + GR+ +
Sbjct: 538 GCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANT-VTYSTVVDGLLKVGRMED 596

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDA 402
           A   L ++ D G +P   TY  + D 
Sbjct: 597 AVVVLRQMRDAGCLPDAVTYNTLIDG 622



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 121/275 (44%), Gaps = 27/275 (9%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L++M   G    V T +  C    L   G  +EA+     M    C P+   Y+ +++ 
Sbjct: 635 LLREMLEAGFHPSVVTYTTLC--HGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDG 692

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+ G   +A    E+M        P V  Y+ LI   CK G           RI EA  
Sbjct: 693 LCKAGRVTEALGYFEKMARDEV-VAPHVIAYSALIDGLCKAG-----------RIDEAYE 740

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
               M+  G +PDVV ++ LI+G C   RI+  LELF  M ++GC  +   YN+ I  Y 
Sbjct: 741 FLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYC 800

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
           +  E   A  ++ +M+   HG+  ++ ++  +I ALC   R+ EA  +        S+P 
Sbjct: 801 LKGEFSAAYALLEEMK--THGIAKNTVTHGIVIKALCGNDRIDEAVSYFH------SIPE 852

Query: 393 ----EYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
               E +Y  +  +L A+       + LR  + DG
Sbjct: 853 DCRDEISYNTLITSLVASRRSEQALELLRAMVADG 887



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 119/275 (43%), Gaps = 54/275 (19%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R N V      L++M+ RG      T +   L+  L  +G   EA +   RM    C 
Sbjct: 46  LCRDNEVDKGCKLLEEMAGRGCAPNAVTYNT--LVNALLGQGRAKEAFSLLERMAANGCP 103

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  + ++I  LC+ G    A  ++++M   GF   PDV  +T+L+ + C+ G      
Sbjct: 104 PELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGF--VPDVEIHTVLLHALCELG------ 155

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER---------------- 305
                R+ EA   F+ +L  GF PD V YN ++DG  K  R+E                 
Sbjct: 156 -----RVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPT 210

Query: 306 -------------------ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
                              A E FD M + G  PN VTY++ I       ++D A+ ++R
Sbjct: 211 VFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLR 270

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             +N   G+    +++ ++H LC+A R+ EA   L
Sbjct: 271 D-KNSQAGM---FAFSSLLHGLCQAHRLEEAIQLL 301



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 125/288 (43%), Gaps = 38/288 (13%)

Query: 142  FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
              +   +   ++FL+ M R G    V T S+  LI  L + G ++  L  F  M +  C+
Sbjct: 729  LCKAGRIDEAYEFLERMIRAGRIPDVVTFSI--LINGLCDAGRIDTGLELFCGMAERGCK 786

Query: 202  PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-------- 253
             D+YAYN +INA C  G F+ A  LLE+M+  G     +  T+ I+I + C         
Sbjct: 787  ADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGI--AKNTVTHGIVIKALCGNDRIDEAV 844

Query: 254  ---YGMQTGCRKAIR-----------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
               + +   CR  I            RR  +A  L R M+  G  PD   Y  ++DG  K
Sbjct: 845  SYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFK 904

Query: 300  TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI----EMMRKMQNLNHGV 355
                E A +L  +M  +G  P+  TY   I   S   ++  A     EM+RK  NL    
Sbjct: 905  AGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRK--NLK--- 959

Query: 356  PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P +  Y+ +I A C+A +V +A   L      G  P    Y  + D+L
Sbjct: 960  PDAIVYSSLIDAFCKADKVDDAWKLLRS---SGIEPTITMYSTMVDSL 1004



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 14/232 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G V +A   F +  QF  RP V  Y+ VI+ LCR    +K   LLE+M   G
Sbjct: 7   LINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM--AG 64

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+  TY  L+++    G           R  EA  L   M   G  P+++ +  +I
Sbjct: 65  RGCAPNAVTYNTLVNALLGQG-----------RAKEAFSLLERMAANGCPPELITFGLII 113

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G CK   IE A  + D+M  +G +P+   +   +     +  +D+A    +++  +   
Sbjct: 114 KGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGF- 172

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            P + +Y  ++  L +AGR+  A   L  L +  S P  +T+ +  D L+ A
Sbjct: 173 TPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKA 224



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 27/234 (11%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P V+ + + ++ L + GN   A    + M   G    P+  TY  LI   CK G      
Sbjct: 209 PTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGV--SPNTVTYDALIDGLCKAGKLDIAL 266

Query: 262 KAIRRRIWEANHLFRLMLFKGF------------------VPDVVAYNCLIDGCCKTYRI 303
             +R +  +A       L  G                   VP+VV +N L++G C+  R+
Sbjct: 267 GLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRV 326

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA---IEMMRKMQNLNHGVPTSSS 360
           + A ELFD M + GC  + +TYN  ++    +  I +A   +E+MR+ +  +   P   +
Sbjct: 327 DEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCS---PNVVT 383

Query: 361 YTPIIHALCEAGRVLEARDFLAELVD-GGSVPREYTYKLVCDALNAAEEPSLLD 413
           ++ +I  LC AGRV +A +    +V   G  P  +TY  + + L  A +   L+
Sbjct: 384 FSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLE 437



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 14/239 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + + +I  L  +  V++       M    C P+   YN ++NAL   G   +A  LL
Sbjct: 35  TVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLL 94

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           E+M   G  CPP++ T+ ++I   CK G            I  A  +   M+ +GFVPDV
Sbjct: 95  ERMAANG--CPPELITFGLIIKGLCKEG-----------EIEAAFRVVDEMVDRGFVPDV 141

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             +  L+   C+  R++ A   F  +   G  P+ VTYN+ +        ++ A  M+ +
Sbjct: 142 EIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAA-GMVLQ 200

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           +   +   PT  ++T  +  L +AG +  A +F   +   G  P   TY  + D L  A
Sbjct: 201 LLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKA 259



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 91/201 (45%), Gaps = 16/201 (7%)

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIR 265
           YNV+IN LC+ G    A     +    GFR  P V TY+ +I   C+   +  GC+    
Sbjct: 4   YNVLINGLCKAGRVCDAFTAFRKAIQFGFR--PTVVTYSTVIDGLCRDNEVDKGCK---- 57

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
                   L   M  +G  P+ V YN L++      R + A  L + M   GC P  +T+
Sbjct: 58  --------LLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITF 109

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              I+      EI+ A  ++ +M +    VP    +T ++HALCE GRV EA  F  +++
Sbjct: 110 GLIIKGLCKEGEIEAAFRVVDEMVDRGF-VPDVEIHTVLLHALCELGRVDEAWFFFQQVL 168

Query: 386 DGGSVPREYTYKLVCDALNAA 406
             G  P   TY  + D L  A
Sbjct: 169 LIGFTPDAVTYNTMVDGLYKA 189



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 131/314 (41%), Gaps = 57/314 (18%)

Query: 153 DFLKDMSRRGNG-ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVV 210
           + L  M+ RG     +T SS+   +  L + G V EAL  F +M +     P V AY+ +
Sbjct: 669 EILDYMAARGCAPNAITYSSI---VDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSAL 725

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           I+ LC+ G  ++A   LE+M   G    PDV T++ILI+  C  G           RI  
Sbjct: 726 IDGLCKAGRIDEAYEFLERMIRAGR--IPDVVTFSILINGLCDAG-----------RIDT 772

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT------ 324
              LF  M  +G   D+ AYN +I+  C       A  L ++M   G   N VT      
Sbjct: 773 GLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIK 832

Query: 325 ---------------------------YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
                                      YN+ I         ++A+E++R M   + G P 
Sbjct: 833 ALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVA-DGGSPD 891

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL----LD 413
           + +Y  ++  L +AG    A   L E+   G  P   TY ++   L+ A++  L     +
Sbjct: 892 ACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFE 951

Query: 414 DGLRKRIR-DGIEY 426
           + LRK ++ D I Y
Sbjct: 952 EMLRKNLKPDAIVY 965



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 12/161 (7%)

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY +LI+  CK G           R+ +A   FR  +  GF P VV Y+ +IDG C+   
Sbjct: 3   TYNVLINGLCKAG-----------RVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNE 51

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++  +L ++M  +GC PN VTYN+ +          +A  ++ +M   N   P   ++ 
Sbjct: 52  VDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAA-NGCPPELITFG 110

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            II  LC+ G +  A   + E+VD G VP    + ++  AL
Sbjct: 111 LIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHAL 151



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 35/242 (14%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+EA   F  MK+  C  DV  YN+++  LC++    +A   +E M      C P+V T+
Sbjct: 326 VDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTE-GCSPNVVTF 384

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           + LI   C  G           + WE     R++  +G  P+   Y  L++G CK     
Sbjct: 385 STLIQGLCNAGRVN--------QAWEVYE--RMVAVEGISPNRFTYAFLLEGLCKAGDSR 434

Query: 305 RALELFDDMNKKG---------------------CIPNRVTYNSFIRYYSVVNEIDKAIE 343
           R  + F+ M ++                      C P  VTYN+ +   S    +  A+ 
Sbjct: 435 RLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALG 494

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           ++  M  +  G+ P   ++  ++  LC+  R+L+A +     ++ G  P   TY  + D 
Sbjct: 495 LLEFM--IESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDG 552

Query: 403 LN 404
           L+
Sbjct: 553 LS 554



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 17/198 (8%)

Query: 187  EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
            +AL     M      PD   Y  V++ L + G+   A  LL++M   G    PD+ TYTI
Sbjct: 875  QALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGH--SPDLRTYTI 932

Query: 247  LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
            +IS   K            +++  A   F  ML K   PD + Y+ LID  CK  +++ A
Sbjct: 933  MISGLSK-----------AKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDA 981

Query: 307  LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
             +L   +   G  P    Y++ +         DKA+E++R+M++ N   P    +T +  
Sbjct: 982  WKL---LRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCE-PGIHIWTSLAT 1037

Query: 367  ALCEAGRVLEARDFLAEL 384
            A    GRV EA   + +L
Sbjct: 1038 AYVAEGRVDEAVKLVNDL 1055



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 19/158 (12%)

Query: 195  MKQFRCR---PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
            +++ R R   PD+  Y ++I+ L +      A    E+M     +  PD   Y+ LI ++
Sbjct: 915  LQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLK--PDAIVYSSLIDAF 972

Query: 252  CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
            CK                + +  ++L+   G  P +  Y+ ++D  CK    ++ALE+  
Sbjct: 973  CKAD--------------KVDDAWKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIR 1018

Query: 312  DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
            +M  K C P    + S    Y     +D+A++++  +Q
Sbjct: 1019 EMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           +V YN LI+G CK  R+  A   F    + G  P  VTY++ I      NE+DK  +++ 
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +M       P + +Y  +++AL   GR  EA   L  +   G  P   T+ L+   L
Sbjct: 61  EMAG-RGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGL 116


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 18/250 (7%)

Query: 148 VKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           V    DFL +M  RG   + +T +S+   +  LG+   +NEA   F RM+Q  C+PDV  
Sbjct: 249 VNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQ---LNEATRLFKRMEQNGCKPDVVT 305

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN++I++L +    N A   L +M   G   PPDV TYT ++   C  G           
Sbjct: 306 YNIIIDSLYKDRLVNDAADFLSEMVDQGI--PPDVVTYTTILHGLCYLG----------- 352

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++ EA  LF+ M  KG  PDVVAYN +ID  CK   +  A+E   +M  +G  PN VTY+
Sbjct: 353 QLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYS 412

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           + +  +  + ++D+A ++ ++M   N  +P + +++ ++  LC+ G V EAR     + +
Sbjct: 413 TILHGFCNLGQLDEATQLFKEMVGRNV-MPNTLTFSILVDGLCQEGMVSEARWVFETMTE 471

Query: 387 GGSVPREYTY 396
            G  P  YTY
Sbjct: 472 KGVEPNIYTY 481



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 129/281 (45%), Gaps = 31/281 (11%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           +K   +   +M R G+   V   S   LI  L   G  N A+  F +M+Q  C+P+V  Y
Sbjct: 179 IKVAVELYNEMVRSGHEPDVI--SYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTY 236

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM----------- 256
           N +I++LC+    N A   L +M   G   PPD  TY  ++   C  G            
Sbjct: 237 NTIIDSLCKDRLVNDAMDFLSEMVGRGI--PPDAITYNSIVHGLCCLGQLNEATRLFKRM 294

Query: 257 -QTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
            Q GC+  +             R + +A      M+ +G  PDVV Y  ++ G C   ++
Sbjct: 295 EQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQL 354

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYT 362
             A+ LF  M +KGC P+ V YN+ I        ++ A+E + +M  ++ G+P ++ +Y+
Sbjct: 355 NEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEM--VDRGIPPNAVTYS 412

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            I+H  C  G++ EA     E+V    +P   T+ ++ D L
Sbjct: 413 TILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGL 453



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 16/234 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI  +  EG +  A+  +  M +    PDV +YN +IN LC  GN N A  + ++M
Sbjct: 165 TFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKM 224

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E  G  C P+V TY  +I S CK            R + +A      M+ +G  PD + Y
Sbjct: 225 EQNG--CKPNVVTYNTIIDSLCK-----------DRLVNDAMDFLSEMVGRGIPPDAITY 271

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N ++ G C   ++  A  LF  M + GC P+ VTYN  I        ++ A + + +M  
Sbjct: 272 NSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEM-- 329

Query: 351 LNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++ G+P    +YT I+H LC  G++ EA     ++   G  P    Y  + D+L
Sbjct: 330 VDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSL 383



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 145/330 (43%), Gaps = 60/330 (18%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           DFL +M  +G    V T   T ++  L   G +NEA+  F +M+Q  C+PDV AYN +I+
Sbjct: 324 DFLSEMVDQGIPPDVVT--YTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIID 381

Query: 213 ALCRVGNFNKARFLLEQM---------------------------------ELPGFRCPP 239
           +LC+    N A   L +M                                 E+ G    P
Sbjct: 382 SLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMP 441

Query: 240 DVYTYTILISSYCKYGM--------QTGCRKAIRRRIW----------------EANHLF 275
           +  T++IL+   C+ GM        +T   K +   I+                EA  +F
Sbjct: 442 NTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVF 501

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
            +M+ KG  PD+ +YN LI+G C + R+++A  L   M+ K   PN VTYN+ ++    V
Sbjct: 502 EIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYV 561

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
             +  A E+ +KM + +  +PT  +Y+ +++ LC+ G + EA      + +    P    
Sbjct: 562 GRLLDAQELFKKMCS-SGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIIL 620

Query: 396 YKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           Y ++ + +    +  +      K   DGI+
Sbjct: 621 YTILIEGMFIGGKLEVAKGLFSKLSADGIQ 650



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 124/276 (44%), Gaps = 51/276 (18%)

Query: 185 VNEALATFYRMKQFRCRPD-----------------------------------VYAYNV 209
           V++ALA+FYRM +   RP                                    VY+ N+
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNI 133

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +IN LCR+ + + A  +  +M   G +  PDV T+T LI+  C  G           +I 
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQ--PDVITFTTLINGVCNEG-----------KIK 180

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            A  L+  M+  G  PDV++YN LI+G C +     A+ +F  M + GC PN VTYN+ I
Sbjct: 181 VAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTII 240

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGG 388
                   ++ A++ + +M  +  G+P  + +Y  I+H LC  G++ EA      +   G
Sbjct: 241 DSLCKDRLVNDAMDFLSEM--VGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNG 298

Query: 389 SVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
             P   TY ++ D+L      +   D L + +  GI
Sbjct: 299 CKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGI 334



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 14/236 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  S+  LI  L     V+ A++ + +M +   +PDV  +  +IN +C  G    A  L 
Sbjct: 127 TVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELY 186

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            +M   G    PDV +Y  LI+  C  G               A H+F+ M   G  P+V
Sbjct: 187 NEMVRSGHE--PDVISYNTLINGLCNSGNTN-----------MAVHVFKKMEQNGCKPNV 233

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V YN +ID  CK   +  A++   +M  +G  P+ +TYNS +     + ++++A  + ++
Sbjct: 234 VTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKR 293

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           M+  N   P   +Y  II +L +   V +A DFL+E+VD G  P   TY  +   L
Sbjct: 294 MEQ-NGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGL 348



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 13/171 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A A   +M   +  P+   YN ++  LC VG    A+ L ++M   G    P + TY
Sbjct: 529 MDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGML--PTLMTY 586

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           +IL++  CK+G            + EA  LF+ M  K   PD++ Y  LI+G     ++E
Sbjct: 587 SILLNGLCKHG-----------HLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLE 635

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
            A  LF  ++  G  P   TYN  I+        D+A E+ RK + + H V
Sbjct: 636 VAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMMKHNV 686



 Score = 45.1 bits (105), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G L T  + + L+  L + G ++EAL  F  MK+ +  PD+  Y ++I  +   G    
Sbjct: 577 SGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEV 636

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           A+ L  ++   G + PP   TY ++I    K G+     +  R+  W+
Sbjct: 637 AKGLFSKLSADGIQ-PPG-RTYNVMIKGLLKEGLSDEAYELFRK--WK 680


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 18/252 (7%)

Query: 153 DFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           + +  MS  G   ++VT SS+   +  L + G V++A+    R+K + C+PD  AY  V+
Sbjct: 412 EVVDHMSEHGCVADIVTYSSI---LDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVL 468

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             LC    + +A  L+ +M      CPPD  T+  +++S C+ G+     +AIR      
Sbjct: 469 KGLCSTEQWERAEELMAEMLCSD--CPPDEVTFNTVVASLCQKGLVD---RAIR------ 517

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +   M   G  PD+V YNC+IDG C    I+ A+EL  D+   GC P+ VT+N+ ++ 
Sbjct: 518 --VVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKG 575

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
              V+  + A ++M  M   N   P   ++  +I +LC+ G + +A + L  + + G VP
Sbjct: 576 LCGVDRWEDAEQLMANMMRSNCP-PDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVP 634

Query: 392 REYTYKLVCDAL 403
              TY +V DAL
Sbjct: 635 NSSTYSIVVDAL 646



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 122/248 (49%), Gaps = 18/248 (7%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           DM  RG    V T S+  L+    +E    +A+A    M+   C PD+  YNV+INA+C 
Sbjct: 276 DMLHRGCSPSVVTYSI--LLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCN 333

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
            G+ ++A  +L    LP   C PD  TYT ++ S C              R  E   L  
Sbjct: 334 EGDVDEALNILSN--LPSHGCKPDAVTYTPVLKSLCG-----------SERWKEVEELLA 380

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M      PD V +N ++   C+   ++RA+E+ D M++ GC+ + VTY+S +     V 
Sbjct: 381 EMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVG 440

Query: 337 EIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
            +D A+E++ +++  ++G  P + +YT ++  LC   +   A + +AE++     P E T
Sbjct: 441 RVDDAVELLSRLK--SYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVT 498

Query: 396 YKLVCDAL 403
           +  V  +L
Sbjct: 499 FNTVVASL 506



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 22/230 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK L  +G V++A   F  +        V  YN ++N  CR G    AR L+  M  P 
Sbjct: 193 LIKRLCSDGRVSDAERVFAALGP---SATVVTYNTMVNGYCRAGRIEDARRLINGMPFP- 248

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD +T+  LI + C           +R RI +A  +F  ML +G  P VV Y+ L+
Sbjct: 249 ----PDTFTFNPLIRALC-----------VRGRIPDALAVFDDMLHRGCSPSVVTYSILL 293

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK     +A+ L D+M  KGC P+ VTYN  I       ++D+A+ ++  +   +HG
Sbjct: 294 DATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLP--SHG 351

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P + +YTP++ +LC + R  E  + LAE+      P E T+  +  +L
Sbjct: 352 CKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSL 401



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 16/235 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+ L   G + +ALA F  M    C P V  Y+++++A C+   + +A  LL++M   G
Sbjct: 257 LIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKG 316

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD+ TY +LI++ C  G            + EA ++   +   G  PD V Y  ++
Sbjct: 317 --CEPDIVTYNVLINAMCNEG-----------DVDEALNILSNLPSHGCKPDAVTYTPVL 363

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              C + R +   EL  +M    C P+ VT+N+ +        +D+AIE++  M    HG
Sbjct: 364 KSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSE--HG 421

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            V    +Y+ I+  LC+ GRV +A + L+ L   G  P    Y  V   L + E+
Sbjct: 422 CVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQ 476



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 18/224 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++  L ++GLV+ A+    +M +  C PD+  YN +I+ LC     + A  LL  ++  G
Sbjct: 502 VVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCG 561

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE-ANHLFRLMLFKGFVPDVVAYNCL 293
             C PD+ T+  L+   C           + R  WE A  L   M+     PD + +N +
Sbjct: 562 --CKPDIVTFNTLLKGLC----------GVDR--WEDAEQLMANMMRSNCPPDELTFNTV 607

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I   C+   + +A+E    M + GC+PN  TY+  +       +   A+E++  M N   
Sbjct: 608 ITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTN--- 664

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           G P   +Y  +I  L +AG++ EA D L  +V  G  P   TY+
Sbjct: 665 GTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYR 708



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 16/214 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L ++GL+ +A+ T   M +  C P+   Y++V++AL + G    A  LL  M    
Sbjct: 607 VITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMT--- 663

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD+ TY  +IS+  K G           ++ EA  L R+M+  G  PD   Y  L 
Sbjct: 664 -NGTPDLITYNTVISNLTKAG-----------KMEEALDLLRVMVSNGLCPDTTTYRSLA 711

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C+    +RA+ +   +   G  P+   YN  +  +      D AI+    M + +  
Sbjct: 712 YGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVS-SGC 770

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +P  S+Y  ++ AL   G + EA+  LA L   G
Sbjct: 771 MPDESTYVILLEALAYGGLLDEAKRLLASLCSLG 804



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 15/189 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG +  +S+ + ++  L + G    AL     M      PD+  YN VI+ L + G   +
Sbjct: 630 NGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGT--PDLITYNTVISNLTKAGKMEE 687

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  LL  M   G  CP D  TY  L    C+   + G  +A+R        + R +   G
Sbjct: 688 ALDLLRVMVSNGL-CP-DTTTYRSLAYGVCR---EDGTDRAVR--------MLRRVQDTG 734

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PD   YN ++ G C+  R + A++ F  M   GC+P+  TY   +   +    +D+A 
Sbjct: 735 LSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAK 794

Query: 343 EMMRKMQNL 351
            ++  + +L
Sbjct: 795 RLLASLCSL 803


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 114/228 (50%), Gaps = 10/228 (4%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            ++  L + G   EAL   + M    C PD+Y YN++INALC+VG    A+ L+E M+   
Sbjct: 1738 ILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQ--A 1795

Query: 235  FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
              CP D+ TY  LI   C+ G         R R+  A  LF  M+ KG  P  V Y  +I
Sbjct: 1796 RECPTDIVTYNTLIHGLCRKGNG-------RFRVERAFRLFEEMVDKGHTPTSVTYTVVI 1848

Query: 295  DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            D   +    E+A ++ D M++ GC  + VTYN  I  ++    +DKA+++  +M      
Sbjct: 1849 DALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRG-C 1907

Query: 355  VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +P   +Y  I+   C+AG+V EA    AE+   G  P   TY  + DA
Sbjct: 1908 IPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDA 1955



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 20/221 (9%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN----FNKARFLLEQM 230
            LI  L + G + +A      M+   C  D+  YN +I+ LCR GN      +A  L E+M
Sbjct: 1773 LINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEM 1832

Query: 231  ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
               G    P   TYT++I +  +  M             +A  +  LM   G   D+V Y
Sbjct: 1833 VDKGH--TPTSVTYTVVIDALLRVKMDE-----------QAQKVLDLMHENGCAFDLVTY 1879

Query: 291  NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
            N LI+   K   +++A++LF +M  +GCIP+ VTYNS +  +    ++++A ++  +M+ 
Sbjct: 1880 NMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMK- 1938

Query: 351  LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
               G+ P   +YT I  A  +AGR+ +A  +L E+   G V
Sbjct: 1939 -ARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLV 1978



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 15/220 (6%)

Query: 185  VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
            V  A   F  M      P    Y VVI+AL RV    +A+ +L+ M   G  C  D+ TY
Sbjct: 1822 VERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENG--CAFDLVTY 1879

Query: 245  TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             +LI+ + K GM             +A  LF  M  +G +PDVV YN ++DG CK  ++E
Sbjct: 1880 NMLINRFAKAGMMD-----------KAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVE 1928

Query: 305  RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
             A +LF +M  +G  PN  TY S          +  A   + +M+    G+  + SY  +
Sbjct: 1929 EANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMR--KEGLVDAISYVAL 1986

Query: 365  IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
            I  +C+ G+       L E+++ G  P   T+ +V +AL+
Sbjct: 1987 ISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALS 2026



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 14/182 (7%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            LI    + G++++A+  F  M    C PDV  YN +++  C+ G   +A  L  +M+  G
Sbjct: 1882 LINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARG 1941

Query: 235  FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                P+  TYT +  +  K G           R+ +A+     M  +G V D ++Y  LI
Sbjct: 1942 IF--PNGRTYTSITDACLKAG-----------RMQDAHAYLVEMRKEGLV-DAISYVALI 1987

Query: 295  DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
               CK  + +   +L  +M +KG  PN VT+N      S  +  D A  M+++++  +  
Sbjct: 1988 STICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQELRQQHSS 2047

Query: 355  VP 356
             P
Sbjct: 2048 PP 2049



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 23/207 (11%)

Query: 204  VYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
             +A+N ++  L     + +A + L+ + +   F+   + +TY+ ++  YC+ G       
Sbjct: 1661 AFAFNRLLEFLVNKRQYKRAHQMLIAESKPSSFQA--NAFTYSTIVRGYCEDG------- 1711

Query: 263  AIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              R+ +    H+      K  VP +   YN ++   CK  + + AL+L   M    C P+
Sbjct: 1712 ETRQALALLEHMK-----KAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPD 1766

Query: 322  RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAG----RVLE 376
              TYN  I     V  ++ A  ++  MQ      PT   +Y  +IH LC  G    RV  
Sbjct: 1767 IYTYNILINALCKVGRLEDAQGLVEMMQARE--CPTDIVTYNTLIHGLCRKGNGRFRVER 1824

Query: 377  ARDFLAELVDGGSVPREYTYKLVCDAL 403
            A     E+VD G  P   TY +V DAL
Sbjct: 1825 AFRLFEEMVDKGHTPTSVTYTVVIDAL 1851


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 137/282 (48%), Gaps = 26/282 (9%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  I+ A  +NV     F + + R     +VT S+   LI  L +   ++EAL    +
Sbjct: 219 CKEQRILDA--HNV-----FKRALERGCRPNVVTYST---LIDGLSKMAKMDEALQLLAK 268

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M +  CR +   Y+ V++ L +VG    A  +L QM   G  C PD  TY  LI  + K 
Sbjct: 269 MVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAG--CLPDAVTYNTLIDGFFK- 325

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                     R+R+ EA  L R ML  GF P VV Y  L  G C++ R + A+E+ D M 
Sbjct: 326 ----------RQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMA 375

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
            +GC PN +TY+S +        + +A+    KM       P   +Y+ +I  LC+AG++
Sbjct: 376 ARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKI 435

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            EA +FL  ++  G +P   T+ ++   +N   +   +D GL
Sbjct: 436 DEAYEFLERMIRAGRIPDVVTFSIL---INGLCDAGRIDTGL 474



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 117/235 (49%), Gaps = 12/235 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + + LI  L  +  V++       M    C P+   YN ++NAL   G   +A  LL
Sbjct: 100 TVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLL 159

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           EQM   G  CPP++ T+ ++I   CK G        I       + +F  M+  G  PDV
Sbjct: 160 EQMAANG--CPPELITFGLIIKGLCKEG-------EIEAAFRVVDEMF--MIESGLSPDV 208

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           + +N ++DG CK  RI  A  +F    ++GC PN VTY++ I   S + ++D+A++++ K
Sbjct: 209 ITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAK 268

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           M  L     T  +Y+ ++  L + GR+ +A   L ++ D G +P   TY  + D 
Sbjct: 269 MVELGCRANT-VTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDG 322



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 14/292 (4%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           +  A   Y  +   F F    +T   +     R + V      L++M+ RG      T +
Sbjct: 81  IENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYN 140

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              L+  L  +G   EA +   +M    C P++  + ++I  LC+ G    A  ++++M 
Sbjct: 141 T--LVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMF 198

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
           +      PDV T+  ++   CK            +RI +A+++F+  L +G  P+VV Y+
Sbjct: 199 MIESGLSPDVITFNSVLDGLCK-----------EQRILDAHNVFKRALERGCRPNVVTYS 247

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            LIDG  K  +++ AL+L   M + GC  N VTY++ +     V  ++ A+ ++R+M++ 
Sbjct: 248 TLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDA 307

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              +P + +Y  +I    +  R+ EA   L E+++ G  P   TY  +C  L
Sbjct: 308 GC-LPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGL 358



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 15/225 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L++M   G    V T +  C    L   G  +EA+     M    C P+   Y+ +++ 
Sbjct: 335 LLREMLEAGFHPSVVTYTTLC--HGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDG 392

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+ G   +A    E+M        P V  Y+ LI   CK G           +I EA  
Sbjct: 393 LCKAGRVTEALGYFEKMARDEV-VAPHVIAYSALIDGLCKAG-----------KIDEAYE 440

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
               M+  G +PDVV ++ LI+G C   RI+  LELF  M ++GC+P+ VTY + +    
Sbjct: 441 FLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLC 500

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
             + +D+A ++ ++M++ +   P  S+   +IH L E  R  +A+
Sbjct: 501 RASRVDEAFDLFQQMRS-DGLSPDRSTRRTMIHGLLEVNRDEDAK 544



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 17/233 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP- 233
           LI  LG++  V EA   F   +   C P V  YN +I+ LC+ G    A  L + M +  
Sbjct: 36  LIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHF 95

Query: 234 GFRCPPDVYTYTILISSYCK-YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
           GFR  P V TY+ LI   C+ + +  GC+            L   M  +G  P+ V YN 
Sbjct: 96  GFR--PTVVTYSTLIDGLCRDHEVDKGCK------------LLEEMAGRGCAPNAVTYNT 141

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L++      R + A  L + M   GC P  +T+   I+      EI+ A  ++ +M  + 
Sbjct: 142 LVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIE 201

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
            G+ P   ++  ++  LC+  R+L+A +     ++ G  P   TY  + D L+
Sbjct: 202 SGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLS 254



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 19/232 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A+  F +M      PDV  Y  +I+ L +     +A  L E+    G  C P V TY
Sbjct: 11  VDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG--CHPTVVTY 68

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPDVVAYNCLIDGCCKTYRI 303
             +I   CK G           RI  A  L+  M    GF P VV Y+ LIDG C+ + +
Sbjct: 69  NTMIDGLCKCG-----------RIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEV 117

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           ++  +L ++M  +GC PN VTYN+ +          +A  ++ +M   N   P   ++  
Sbjct: 118 DKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAA-NGCPPELITFGL 176

Query: 364 IIHALCEAGRVLEARDFLAE--LVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
           II  LC+ G +  A   + E  +++ G  P   T+  V D L   +E  +LD
Sbjct: 177 IIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGL--CKEQRILD 226



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 68/138 (49%)

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           R++ +A  LF+ M+ K   PDVV Y  LIDG  K  R++ A +LF++   KGC P  VTY
Sbjct: 9   RKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTY 68

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           N+ I        I+ A+ +   M       PT  +Y+ +I  LC    V +    L E+ 
Sbjct: 69  NTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMA 128

Query: 386 DGGSVPREYTYKLVCDAL 403
             G  P   TY  + +AL
Sbjct: 129 GRGCAPNAVTYNTLVNAL 146



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 81/189 (42%), Gaps = 31/189 (16%)

Query: 153 DFLKDMSRRGNG-ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVV 210
           + L  M+ RG     +T SS+   +  L + G V EAL  F +M +     P V AY+ +
Sbjct: 369 EILDYMAARGCAPNAITYSSI---VDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSAL 425

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQT 258
           I+ LC+ G  ++A   LE+M   G    PDV T++ILI+  C  G             + 
Sbjct: 426 IDGLCKAGKIDEAYEFLERMIRAGR--IPDVVTFSILINGLCDAGRIDTGLELFRGMAER 483

Query: 259 GC------------RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           GC            R     R+ EA  LF+ M   G  PD      +I G  +  R E A
Sbjct: 484 GCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDA 543

Query: 307 LELFDDMNK 315
             + D+ N 
Sbjct: 544 KRIQDEENS 552



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +IDG CK+ ++++A+ LF  M  K   P+ VTY + I        + +A ++  + +   
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 353 -HGVPTSSSYTPIIHALCEAGRVLEARDFLAEL-VDGGSVPREYTYKLVCDAL 403
            H  PT  +Y  +I  LC+ GR+  A     ++ +  G  P   TY  + D L
Sbjct: 61  CH--PTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGL 111


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 140/294 (47%), Gaps = 23/294 (7%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDF----LKDMSRRGNGELV 167
           ++KAT+ +  +++      N +TC  +     +  N+K   +     L D S  G     
Sbjct: 423 ISKATQLFLKMQKL-GCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKP 481

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
              S + +I  L + G  +EA   F  MK     PDV +Y  +I+  CR G +  A++L 
Sbjct: 482 NAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLF 541

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            +M   G +  PDV T+++LI   CK G           ++ EAN L  +M+ +G +P+ 
Sbjct: 542 NEMVDIGVQ--PDVTTFSVLIDMLCKEG-----------KVIEANELLEVMIQRGCIPNT 588

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y  L+ G C   RI  A +LF  M K GC+P+ VTY + ++       I  A+E+ +K
Sbjct: 589 VTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKK 648

Query: 348 M-----QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           M     Q   +  P   SY+ II  LC+ GR  EAR+   E+   G +P   +Y
Sbjct: 649 MLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISY 702



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 123/249 (49%), Gaps = 18/249 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L D  R G     T  S + +I  L ++   +EA   F  MK     PDV +Y  +I+
Sbjct: 286 EMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIH 345

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             C  G + KA+ L  +M   G +  PDV T ++LI   CK G           ++ EAN
Sbjct: 346 GFCLSGKWEKAKCLFNEMLDVGIQ--PDVTTSSVLIDMLCKKG-----------KVIEAN 392

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L  +++ +G +PDVV    L+ G C  +RI +A +LF  M K GC+PN VT  + ++  
Sbjct: 393 KLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGL 452

Query: 333 SVVNEIDKAIEMMRKMQNLN--HGV---PTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
                I  A+E+ + M +    +G+   P + SY+ II  LC+ GR  EAR+   E+   
Sbjct: 453 CQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKAL 512

Query: 388 GSVPREYTY 396
           G +P   +Y
Sbjct: 513 GVIPDVISY 521



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 123/249 (49%), Gaps = 18/249 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L D S+ G     T  S + +I  L ++   +EA   F  MK     PDV +Y  +I+
Sbjct: 105 EMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIH 164

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             CR G + KA+ L  +M   G R   DV T ++LI   CK G           ++ EAN
Sbjct: 165 GFCRSGKWEKAKCLFNEMLDVGIR--SDVTTSSMLIDILCKEG-----------KVIEAN 211

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L  +M+ +G + D+V Y+ LI G C  +RI  A  LF  M K GC P+ + Y + ++  
Sbjct: 212 ELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGL 271

Query: 333 SVVNEIDKAIEMMRKMQNLN--HGV---PTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
                I+ A+++ ++M N    +G+   PT  SY+ II  LC+  R  EAR+   E+   
Sbjct: 272 CQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQ 331

Query: 388 GSVPREYTY 396
           G +P   +Y
Sbjct: 332 GIMPDVISY 340



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 143/318 (44%), Gaps = 69/318 (21%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALA 190
           +M CKE  ++ A         + L+ M +RG   ++VT S+   LIK L  +  ++EA  
Sbjct: 18  DMFCKEGKVIEAN--------ELLEVMVQRGCILDIVTYST---LIKGLCMKHRISEATQ 66

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM----ELPGFRCPPDVYTYTI 246
            F  MK+  CRPD  AY  ++  LC+ G  N A  L ++M       G +C P + +Y+I
Sbjct: 67  LFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSI 126

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           +I   CK            RR  EA  LF+ M  +G +PDV++Y  LI G C++ + E+A
Sbjct: 127 IIDGLCK-----------DRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKA 175

Query: 307 LELFDD-----------------------------------MNKKGCIPNRVTYNSFIRY 331
             LF++                                   M ++GCI + VTY++ I+ 
Sbjct: 176 KCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKG 235

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV-DGGSV 390
             + + I +A  +   MQ L    P + +Y  ++  LC+ G +  A     E++ D G  
Sbjct: 236 LCMKHRISEATRLFMSMQKLGCR-PDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRY 294

Query: 391 -----PREYTYKLVCDAL 403
                P   +Y ++ D L
Sbjct: 295 GIKCKPTLISYSIIIDGL 312



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 25/215 (11%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           +M CKE  ++ A         + L+ M +RG   +  T + T L+K L     ++EA   
Sbjct: 561 DMLCKEGKVIEAN--------ELLEVMIQRGC--IPNTVTYTTLVKGLCMNDRISEATQL 610

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTIL 247
           F +M++  C PDV  Y  ++  LC+ GN   A  L ++M       G    PDV +Y+I+
Sbjct: 611 FMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSII 670

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I   CK+G           R  EA  LF+ M   G +P+V++Y  LI G C++ ++E A 
Sbjct: 671 IDGLCKHG-----------REDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK 719

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
            LF++M  +G   N VTY+  I  +    +IDKA+
Sbjct: 720 HLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 754



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 16/163 (9%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PDV T  +LI  +CK G           ++ EAN L  +M+ +G + D+V Y+ LI G C
Sbjct: 8   PDVTTSGVLIDMFCKEG-----------KVIEANELLEVMVQRGCILDIVTYSTLIKGLC 56

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN--LNHGV- 355
             +RI  A +LF  M K GC P+ + Y + ++      +I+ A+ + ++M N    +G+ 
Sbjct: 57  MKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIK 116

Query: 356 --PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             PT  SY+ II  LC+  R  EAR+   E+   G +P   +Y
Sbjct: 117 CKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISY 159



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 116/244 (47%), Gaps = 24/244 (9%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           VTTS V  LI +  +EG V EA      M Q  C  D+  Y+ +I  LC     ++A  L
Sbjct: 10  VTTSGV--LIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQL 67

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-- 284
              M+  G  C PD   Y  L+   C+ G           +I  A HL + ML       
Sbjct: 68  FMSMKKLG--CRPDAIAYGTLMKGLCQTG-----------KINIALHLHQEMLNDTSQYG 114

Query: 285 ----PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
               P +V+Y+ +IDG CK  R + A ELF +M  +G +P+ ++Y S I  +    + +K
Sbjct: 115 IKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEK 174

Query: 341 AIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A  +  +M  L+ G+ +  ++ + +I  LC+ G+V+EA + L  ++  G +    TY  +
Sbjct: 175 AKCLFNEM--LDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTL 232

Query: 400 CDAL 403
              L
Sbjct: 233 IKGL 236



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 100/209 (47%), Gaps = 20/209 (9%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDV    V+I+  C+ G   +A  LLE M   G  C  D+ TY+ LI   C        
Sbjct: 7   QPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRG--CILDIVTYSTLIKGLC-------- 56

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL----ELFDDMNKK 316
              ++ RI EA  LF  M   G  PD +AY  L+ G C+T +I  AL    E+ +D ++ 
Sbjct: 57  ---MKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQY 113

Query: 317 G--CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           G  C P  V+Y+  I         D+A E+ ++M+     +P   SYT +IH  C +G+ 
Sbjct: 114 GIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGM-MPDVISYTSLIHGFCRSGKW 172

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +A+    E++D G      T  ++ D L
Sbjct: 173 EKAKCLFNEMLDVGIRSDVTTSSMLIDIL 201



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 7/132 (5%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           ML  G  PDV     LID  CK  ++  A EL + M ++GCI + VTY++ I+   + + 
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV------P 391
           I +A ++   M+ L    P + +Y  ++  LC+ G++  A     E+++  S       P
Sbjct: 61  ISEATQLFMSMKKLGCR-PDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKP 119

Query: 392 REYTYKLVCDAL 403
              +Y ++ D L
Sbjct: 120 TLVSYSIIIDGL 131


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 149/312 (47%), Gaps = 27/312 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + R N+V   +     M  +G        S T +I  L E G ++E ++ F +M++  C 
Sbjct: 259 YCRNNDVNSAYKVFNMMPNKGCRR--NEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCY 316

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P V  Y V+I+AL   GN      +    E+    C P+V+TYT+++ + CK        
Sbjct: 317 PTVRTYTVIIHAL--FGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCK-------- 366

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               R++ E+  +   M+ KG VP VV YN LI G C+  RIE ALE+   M    C PN
Sbjct: 367 ---ERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPN 423

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TYN  I  +S    + KA+ ++ KM   +   P+  +Y  +IH  C+AG    A   L
Sbjct: 424 ERTYNELICGFSKRKHVHKAMTLLSKMLE-SKLTPSLVTYNSLIHVQCKAGHFDSAYKLL 482

Query: 382 AELVDGGSVPREYTYKLVCDALNAA---EEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIM 438
             L + G VP ++TY +  D L  +   EE   L + L+++   GI  +  +VM    I 
Sbjct: 483 DLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEK---GI--KANEVMYTALID 537

Query: 439 KHKELLKCGEID 450
            H    K G+ID
Sbjct: 538 GH---CKAGKID 546



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 115/253 (45%), Gaps = 49/253 (19%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A+    +M + +  P +  YN +I+  C+ G+F+ A  LL+ ++  G    PD +TY
Sbjct: 440 VHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLV--PDQWTY 497

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           ++ I + CK            +R+ EA  LF  +  KG   + V Y  LIDG CK  +I+
Sbjct: 498 SVFIDTLCK-----------SKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKID 546

Query: 305 RALELFDDMNKKGCIPNRVTYNSFI-----------------------------RYYSVV 335
            A+ L + M+ + C+PN  TYNS I                              Y  ++
Sbjct: 547 EAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILI 606

Query: 336 NEI------DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
            E+      D A  +  +M +  H  P   +YT  IH  C +G V EA   +A +++ G 
Sbjct: 607 EEMLREGDFDHANRVFNQMVSFGHK-PDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGV 665

Query: 390 VPREYTYKLVCDA 402
           +P   TY L+  A
Sbjct: 666 MPDSLTYTLLISA 678



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 118/253 (46%), Gaps = 20/253 (7%)

Query: 157 DMSRRGNGELV------TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           D SRR   E++      +  +   LI+   EEG +  AL     M+   CRP+   YN +
Sbjct: 371 DESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNEL 430

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           I    +  + +KA  LL +M     +  P + TY  LI   CK G      K        
Sbjct: 431 ICGFSKRKHVHKAMTLLSKMLES--KLTPSLVTYNSLIHVQCKAGHFDSAYK-------- 480

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
              L  L+   G VPD   Y+  ID  CK+ R+E A +LF+ + +KG   N V Y + I 
Sbjct: 481 ---LLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALID 537

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            +    +ID+AI ++ +M + +  +P SS+Y  +I+ +C+ G+V E    +  +   G  
Sbjct: 538 GHCKAGKIDEAISLLERMHSED-CLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVK 596

Query: 391 PREYTYKLVCDAL 403
           P   TY ++ + +
Sbjct: 597 PTVATYTILIEEM 609



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 119/253 (47%), Gaps = 16/253 (6%)

Query: 146 NNVKGLWDFLKDMSRRGNGEL--VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           ++++ L DFL+ M+R  N     ++  S   L+ +L    +++E    +  M      P+
Sbjct: 154 DDIRFLLDFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPN 213

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y  N ++NA  ++GN  +A   + ++   G    PD +TYT LI  YC+          
Sbjct: 214 IYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLS--PDSFTYTSLILGYCR---------- 261

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               +  A  +F +M  KG   + V+Y  +I G C+  RI+  + LF  M +  C P   
Sbjct: 262 -NNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVR 320

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           TY   I      +   + +++  +M+      P   +YT ++ A+C+  ++ E+R  L E
Sbjct: 321 TYTVIIHALFGNDRNLEGMDLFNEMRE-RSCEPNVHTYTVMVDAMCKERKLDESRRILNE 379

Query: 384 LVDGGSVPREYTY 396
           +++ G VP   TY
Sbjct: 380 MMEKGLVPSVVTY 392



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 12/165 (7%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P++YT   ++++Y K G            I EAN     +   G  PD   Y  LI G C
Sbjct: 212 PNIYTLNTMVNAYSKMG-----------NIVEANLYVSKIFQAGLSPDSFTYTSLILGYC 260

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           +   +  A ++F+ M  KGC  N V+Y + I        ID+ I + +KM+  +   PT 
Sbjct: 261 RNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMRE-DDCYPTV 319

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +YT IIHAL    R LE  D   E+ +    P  +TY ++ DA+
Sbjct: 320 RTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAM 364



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L  +S+   LI  + +EG V E L+    M +   +P V  Y ++I  + R G+F+ A  
Sbjct: 561 LPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANR 620

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           +  QM   G +  PDVYTYT  I +YC  G            + EA  +   M+  G +P
Sbjct: 621 VFNQMVSFGHK--PDVYTYTAFIHTYCTSG-----------NVKEAEGMMARMIEAGVMP 667

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
           D + Y  LI    +      A  +   M   GC P+   +N+ I Y
Sbjct: 668 DSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLIWY 713



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 13/176 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    + G ++EA++   RM    C P+   YN +I  +C+ G   +   ++E M  
Sbjct: 533 TALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSK 592

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  P V TYTILI    + G               AN +F  M+  G  PDV  Y  
Sbjct: 593 MGVK--PTVATYTILIEEMLREG-----------DFDHANRVFNQMVSFGHKPDVYTYTA 639

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            I   C +  ++ A  +   M + G +P+ +TY   I  Y  +     A  ++++M
Sbjct: 640 FIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRM 695



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 16/154 (10%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V   G   +GL   +++MS+ G    V T   T LI+ +  EG  + A   F +M  F  
Sbjct: 574 VCKEGKVQEGL-SMVENMSKMGVKPTVAT--YTILIEEMLREGDFDHANRVFNQMVSFGH 630

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y   I+  C  GN  +A  ++ +M   G    PD  TYT+LIS+Y + G+    
Sbjct: 631 KPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVM--PDSLTYTLLISAYERLGLA--- 685

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                   ++A ++ + ML  G  P    +N LI
Sbjct: 686 --------YDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 3/137 (2%)

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           I E   ++  ML    VP++   N +++   K   I  A      + + G  P+  TY S
Sbjct: 195 IDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTS 254

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVD 386
            I  Y   N+++ A ++   M   N G   +  SYT IIH LCEAGR+ E      ++ +
Sbjct: 255 LILGYCRNNDVNSAYKVFNMMP--NKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMRE 312

Query: 387 GGSVPREYTYKLVCDAL 403
               P   TY ++  AL
Sbjct: 313 DDCYPTVRTYTVIIHAL 329


>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 598

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 124/235 (52%), Gaps = 13/235 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
            T +V  L++ L   G ++EA      ++ F C PDV  YN +I+ LCR+   ++AR LL
Sbjct: 175 VTYTVNILMRGLCRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLL 234

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           +++ L G    PDV +YT +IS YCK+            ++ E N LF  M+  G  P+ 
Sbjct: 235 KEVCLNG-EFAPDVVSYTTIISGYCKFS-----------KMEEGNLLFGEMIRSGTAPNT 282

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             +N LI G  K   +  AL L++ M  +GC+P+  T+ S I  Y  + ++ +A++M  K
Sbjct: 283 FTFNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDMWHK 342

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           M + N G  T  +++ ++  LC   R+ +ARD L  L +   VP+ + Y  V D 
Sbjct: 343 MNDKNIGA-TLYTFSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDG 396



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 26/215 (12%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI- 264
            Y++++ +LCR    + A+ + + M   G    PD      L+ SY   G     R+ + 
Sbjct: 73  TYSLLLRSLCRSNLHHTAKVVYDWMRCDGQ--IPDNRLLGFLVWSYAIVGRLDVSRELLA 130

Query: 265 -----------------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
                                  + ++ +A  LFR ++   + P     N L+ G C+  
Sbjct: 131 DVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILMRGLCRAG 190

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
            I+ A  L +D+   GC+P+ +TYN+ I     +NE+D+A  +++++       P   SY
Sbjct: 191 EIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSY 250

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           T II   C+  ++ E      E++  G+ P  +T+
Sbjct: 251 TTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTF 285



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 15/192 (7%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           +M R G      T +   LI   G+ G +  ALA + +M    C PDV  +  +IN   R
Sbjct: 272 EMIRSGTAP--NTFTFNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYFR 329

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
           +G  ++A  +  +M          +YT+++L+S  C              R+ +A  + R
Sbjct: 330 LGQVHQAMDMWHKMNDKNI--GATLYTFSVLVSGLCN-----------NNRLHKARDILR 376

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
           L+     VP    YN +IDG CK+  ++ A ++  +M    C P+++T+   I  + +  
Sbjct: 377 LLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKG 436

Query: 337 EIDKAIEMMRKM 348
            + +AI +  KM
Sbjct: 437 RMPEAIGIFHKM 448



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 12/161 (7%)

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY++L+ S C+  +              A  ++  M   G +PD      L+       R
Sbjct: 73  TYSLLLRSLCRSNLHH-----------TAKVVYDWMRCDGQIPDNRLLGFLVWSYAIVGR 121

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           ++ + EL  D+       N V YN         N++  A+ + R++  L +  P + +  
Sbjct: 122 LDVSRELLADVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYK-PVTYTVN 180

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            ++  LC AG + EA   L +L   G +P   TY  +   L
Sbjct: 181 ILMRGLCRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGL 221



 Score = 38.9 bits (89), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 4/130 (3%)

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           + Y+ L+   C++     A  ++D M   G IP+       +  Y++V  +D + E++  
Sbjct: 72  LTYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLVWSYAIVGRLDVSRELLAD 131

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           +Q  N GV  +  Y  + + L    +V++A     EL+     P  YT  ++   L  A 
Sbjct: 132 VQCNNVGV-NAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILMRGLCRAG 190

Query: 408 EPSLLDDGLR 417
           E   +D+  R
Sbjct: 191 E---IDEAFR 197


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 134/280 (47%), Gaps = 31/280 (11%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG  +   + T ++  L +   + EA+A   ++    C P +  YN ++N LC++G   +
Sbjct: 28  NGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE 87

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK------------------YGMQTGCRKAI 264
           A  LL ++   G  C PDV TYT LI    K                    + T C  A+
Sbjct: 88  AIDLLRKIVDNG--CTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTAL 145

Query: 265 RR------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
            R      +I +A+ +++ M  +G VPDVV  + +IDG CK  RI  A+ +F  M  +G 
Sbjct: 146 IRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGL 205

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            PN V Y++ I       ++D A+EM+ +M+      P + +Y  +I  LC++G V  AR
Sbjct: 206 APNEVVYSALIHGLCKARKMDCALEMLAQMKK-AFCTPDTITYNILIDGLCKSGDVAAAR 264

Query: 379 DFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDD 414
            F  E+++ G  P  YTY ++    C A N      + DD
Sbjct: 265 AFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDD 304



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 16/210 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G V  A A F  M +  C+PDVY YN++I+  C+ GN + A  + + M    
Sbjct: 250 LIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMS--S 307

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            RC P+V TY  LIS  CK           RR++ +A+  ++ M  +G  PD   Y+ L+
Sbjct: 308 SRCSPNVVTYGTLISGLCK-----------RRQLTKASLYYQHMKERGCPPDSFVYSSLV 356

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+ ++E    LFD+M + G + N  T    I +    N +D+A+ +   ++    G
Sbjct: 357 DGLCKSGKLEGGCMLFDEMERSG-VANSQTRTRLIFHLCKANRVDEAVSLFNAIRK--EG 413

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           +P   +Y  II AL ++G+V E +    E+
Sbjct: 414 MPHPYAYNSIISALIKSGKVNEGQAVYQEM 443



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 121/305 (39%), Gaps = 53/305 (17%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +   K+M+ RG    + T   T LI+ L + G + +A + +  M    C PDV   + +I
Sbjct: 124 YKLFKEMASRGLA--LDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMI 181

Query: 212 NALCRVGNFNKARFLLEQMELPGFR---------------------------------CP 238
           + LC+ G    A  + + ME  G                                   C 
Sbjct: 182 DGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCT 241

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD  TY ILI   CK G            +  A   F  ML  G  PDV  YN LI G C
Sbjct: 242 PDTITYNILIDGLCKSG-----------DVAAARAFFDEMLEAGCKPDVYTYNILISGFC 290

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K    + A  +FDDM+   C PN VTY + I       ++ KA    + M+    G P  
Sbjct: 291 KAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMK--ERGCPPD 348

Query: 359 S-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV---CDALNAAEEPSLLDD 414
           S  Y+ ++  LC++G++        E+   G    +   +L+   C A N  +E   L +
Sbjct: 349 SFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKA-NRVDEAVSLFN 407

Query: 415 GLRKR 419
            +RK 
Sbjct: 408 AIRKE 412



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 12/146 (8%)

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T++ILI+   K GM           + +A+ L +     G   D+  Y  ++D   K  +
Sbjct: 1   TFSILINGLVKAGM-----------LIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKK 49

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           I+ A+ L + +   GC P   TYN+ +     +  +++AI+++RK+ + N   P   +YT
Sbjct: 50  IQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD-NGCTPDVVTYT 108

Query: 363 PIIHALCEAGRVLEARDFLAELVDGG 388
            +I  L +  R  EA     E+   G
Sbjct: 109 SLIDGLGKKKRSFEAYKLFKEMASRG 134


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 116/220 (52%), Gaps = 23/220 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G +N+A   F ++      P   AY  +I+ LC   +F+ AR L   M   G
Sbjct: 329 LIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRG 388

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             CPP   TY ++I + CK GM           + EA  L + M+  G VPDVV YN ++
Sbjct: 389 --CPPSPVTYNVMIDASCKRGM-----------LEEACDLIKKMIEDGHVPDVVTYNTVM 435

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE---------MM 345
           DG CK+ R+E AL LF++M + GC PNR ++N+ I      ++ID+A +         ++
Sbjct: 436 DGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLL 495

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           ++M +  H VP   +Y+ +I  LC   RV +AR  L ++V
Sbjct: 496 KRMTDDGH-VPDVVTYSTLISGLCSIARVDDARHLLEDMV 534



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 113/255 (44%), Gaps = 21/255 (8%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           + G ++EA     RM      PDV  Y+ +I+ LC +   + AR LLE M     +C P 
Sbjct: 484 QRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDM--VKRQCKPT 541

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           V T   LI   CK G           RI EA  +   M+  G  PDVV YN L+ G C+ 
Sbjct: 542 VVTQNTLIHGLCKAG-----------RIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRA 590

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            + ERA EL  DM  +G  PN VTY + +      N + +A  +  +M++ +   P   +
Sbjct: 591 GQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKS-SGCAPNLFT 649

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDG- 415
           YT +I   C AG+V        E+V  G  P    Y      +C +  +A    +L +G 
Sbjct: 650 YTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGR 709

Query: 416 --LRKRIRDGIEYRF 428
             LR        YRF
Sbjct: 710 ESLRSEAWGDEVYRF 724



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 118/277 (42%), Gaps = 36/277 (12%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G   +T + T LI  L      ++A   F  M +  C P    YNV+I+A C+ G   +
Sbjct: 352 SGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEE 411

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------QTGC---------- 260
           A  L+++M   G    PDV TY  ++   CK               + GC          
Sbjct: 412 ACDLIKKMIEDGH--VPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTI 469

Query: 261 -----------RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
                      +   R ++ EA  L + M   G VPDVV Y+ LI G C   R++ A  L
Sbjct: 470 ILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 529

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
            +DM K+ C P  VT N+ I        I +A E++  M +     P   +Y  ++H  C
Sbjct: 530 LEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS-PDVVTYNTLVHGHC 588

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            AG+   AR+ L+++V  G  P   TY  +   L  A
Sbjct: 589 RAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKA 625



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 107/239 (44%), Gaps = 16/239 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L+DM +R     V T +   LI  L + G + EA      M      PDV  YN +++ 
Sbjct: 529 LLEDMVKRQCKPTVVTQNT--LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHG 586

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            CR G   +AR LL  M   G    P+V TYT L+S  CK             R+ EA  
Sbjct: 587 HCRAGQTERARELLSDMVARGL--APNVVTYTALVSGLCKA-----------NRLPEACG 633

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +F  M   G  P++  Y  LI G C   +++  L+LF +M   G  P+ V Y +      
Sbjct: 634 VFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELC 693

Query: 334 VVNEIDKAIEMMRK-MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                 +A+E++R+  ++L         Y   +  L EAG++  A  F+ ++V GG +P
Sbjct: 694 KSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLP 752



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 122/258 (47%), Gaps = 13/258 (5%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           +   S+  ++  L + G ++EAL  +   ++ R  P +   NV++   C  G  +KAR L
Sbjct: 178 LAAGSLDSVLVGLMDSGRIDEALQVY---RENRREPCLVTLNVLLEGFCSRGQVDKAREL 234

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
           L  M  P   C PD  +Y  ++   CK G     R     R++    L          P 
Sbjct: 235 LRAM--PDEECAPDEVSYCTVLDGLCKAG-----RVEEAVRLFGDRELPSSSSSSSSPPS 287

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           +  YN +I G C+  RI+ A+++F+ MN++   P+  +Y   I   +   +++ A  + +
Sbjct: 288 LRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQ 347

Query: 347 KMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           K+  L+ GV P++ +YT +IH LC A    +AR+  A++   G  P   TY ++ DA   
Sbjct: 348 KL--LHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCK 405

Query: 406 AEEPSLLDDGLRKRIRDG 423
                   D ++K I DG
Sbjct: 406 RGMLEEACDLIKKMIEDG 423



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 21/207 (10%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C PD + +  ++  LC+ G  ++A  ++++M       PP   T + L    C       
Sbjct: 75  CFPDSFTFTTILCGLCKAGKMDEAELVMDEMR--SRMIPPYFATSSFLAHELC------- 125

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
               +R  +  A  L  +M     V +  AYN ++   CK  R++ ALEL   M++K   
Sbjct: 126 ----LRGSMERAFQLLEIMP----VANSSAYNIVVVALCKAARVDDALELARTMSEKRIP 177

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
               + +S +        ID+A+++ R+    N   P   +   ++   C  G+V +AR+
Sbjct: 178 LAAGSLDSVLVGLMDSGRIDEALQVYRE----NRREPCLVTLNVLLEGFCSRGQVDKARE 233

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAA 406
            L  + D    P E +Y  V D L  A
Sbjct: 234 LLRAMPDEECAPDEVSYCTVLDGLCKA 260



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 21/205 (10%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T ++  L + G ++EA      M+     P     + + + LC  G+  +A  LLE M +
Sbjct: 83  TTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMPV 142

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
                  +   Y I++ + CK             R+ +A  L R M  K       + + 
Sbjct: 143 ------ANSSAYNIVVVALCKAA-----------RVDDALELARTMSEKRIPLAAGSLDS 185

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           ++ G   + RI+ AL+++ +  ++ C+   VT N  +  +    ++DKA E++R M +  
Sbjct: 186 VLVGLMDSGRIDEALQVYRENRREPCL---VTLNVLLEGFCSRGQVDKARELLRAMPD-E 241

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEA 377
              P   SY  ++  LC+AGRV EA
Sbjct: 242 ECAPDEVSYCTVLDGLCKAGRVEEA 266



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 92/232 (39%), Gaps = 58/232 (25%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           AYN+V+ ALC+    + A  L   M     R P    +   ++      G          
Sbjct: 147 AYNIVVVALCKAARVDDALELARTMSEK--RIPLAAGSLDSVLVGLMDSG---------- 194

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            RI EA  ++R    +   P +V  N L++G C   ++++A EL   M  + C P+ V+Y
Sbjct: 195 -RIDEALQVYRENRRE---PCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSY 250

Query: 326 NSF----------------------------------IRYYSVV-------NEIDKAIEM 344
            +                                   +R Y++V       + ID+A++M
Sbjct: 251 CTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQM 310

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             KM   N   P S SY  +I  L +AG++ +AR+   +L+  G  P    Y
Sbjct: 311 FEKMNERNVS-PDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAY 361



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 44/173 (25%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML-FKGFVPDVVAYNCLIDGC 297
           P    +T +I  +C  G           R +EA  +F LM       PDV  YN LID  
Sbjct: 8   PAPLLFTSVIQGWCNVG-----------RTFEAVKIFSLMEECHSPYPDV--YNVLIDSL 54

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN------- 350
            K    E   ++   M  +GC P+  T+ + +       ++D+A  +M +M++       
Sbjct: 55  SKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYF 114

Query: 351 -----LNHG------------------VPTSSSYTPIIHALCEAGRVLEARDF 380
                L H                   V  SS+Y  ++ ALC+A RV +A + 
Sbjct: 115 ATSSFLAHELCLRGSMERAFQLLEIMPVANSSAYNIVVVALCKAARVDDALEL 167


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 136/305 (44%), Gaps = 52/305 (17%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           +G+G +  T   T L+  L +E  +++ALA  + M+   C P+V  YN +I+ LC+    
Sbjct: 71  QGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEP 130

Query: 221 NKARFLLEQME--------------LPGF--------------------------RCPPD 240
           ++A+ L E M+              L G                           RC P+
Sbjct: 131 DRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPN 190

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           V TY++LI   CK             R+ +A  L   M  +G  PDV+ Y  L+DG CK 
Sbjct: 191 VITYSVLIDGLCK-----------ANRVSQAVELLESMKARGCSPDVITYTILVDGLCKE 239

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            ++  A E+  +M   GC+PN VTYNS +        +  A+ +MR M       P   +
Sbjct: 240 SKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDM-TCRGCTPNVVT 298

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
           Y  +I  LC+ GRV +A   LA+++D G  P    Y ++ + L  A++       LR+ +
Sbjct: 299 YGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAV 358

Query: 421 RDGIE 425
             GI+
Sbjct: 359 SGGIK 363



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 124/248 (50%), Gaps = 20/248 (8%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           ++VT SSV   I  L     ++EA      +K   C PDV  Y+ +I+ LC+ G  ++A 
Sbjct: 365 DVVTYSSV---IYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAF 421

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            L E M   G  C  DV TY+ LI   CK G           R+ EA+ L   M+  G  
Sbjct: 422 DLYEVM--AGDGCDADVVTYSTLIDGLCKAG-----------RVDEAHLLLARMVRMGTP 468

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P  + YN LI G C    ++ A+EL ++M +  C P+ VTYN  I     +  +D A+ +
Sbjct: 469 PSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVL 528

Query: 345 MRKMQNLNHGVPTSS----SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           + + +        ++    +Y+ +I  LC+AGRV EA D+  E++D G +P   TY ++ 
Sbjct: 529 LEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILL 588

Query: 401 DALNAAEE 408
           + L  +++
Sbjct: 589 EGLKKSKD 596



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 124/275 (45%), Gaps = 21/275 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             + N V    + L+ M  RG    V T ++  L+  L +E  V  A      M    C 
Sbjct: 201 LCKANRVSQAVELLESMKARGCSPDVITYTI--LVDGLCKESKVAAAWEVLREMLDAGCV 258

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  YN +++ LCR    + A  L+  M   G  C P+V TY  LI   CK G      
Sbjct: 259 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRG--CTPNVVTYGTLIDGLCKVG------ 310

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A  +   M+ KG  PD++ YN LI+G CK  +++ ++ L       G  P+
Sbjct: 311 -----RVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPD 365

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDF 380
            VTY+S I      N +D+A  ++  ++  + G P     Y+ +I  LC+AG+V EA D 
Sbjct: 366 VVTYSSVIYGLCRSNRLDEACRLLLYVK--SRGCPPDVILYSTLIDGLCKAGKVDEAFDL 423

Query: 381 LAELVDGGSVPREYTYKLVCDALNAA---EEPSLL 412
              +   G      TY  + D L  A   +E  LL
Sbjct: 424 YEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLL 458



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 21/218 (9%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C+PDVY Y  ++   CR G  ++A+   ++M        P+V+  +ILI   CK      
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNL--VPNVFLCSILIDGLCK------ 56

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                 +R  +A   FR M   G V D V Y  L+ G  K  R+++AL +  +M   GC 
Sbjct: 57  -----AKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCE 111

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN VTYNS I      NE D+A E+   M+++    P+  +Y  ++  L   G++  A  
Sbjct: 112 PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECS-PSMVTYNTLLDGLFRTGKLERAMA 170

Query: 380 FLAELVDGGS-------VPREYTYKLVCDALNAAEEPS 410
              E++D  S        P   TY ++ D L  A   S
Sbjct: 171 LFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVS 208



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 19/227 (8%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G +++A   F  M+     P+V+  +++I+ LC+      A      M+  G     D  
Sbjct: 23  GEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGI--VADTV 80

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
            YT L+S   K            +R+ +A  +   M   G  P+VV YN LIDG CK   
Sbjct: 81  IYTALLSGLWK-----------EKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNE 129

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN-LNHGV-----P 356
            +RA ELF+ M    C P+ VTYN+ +       ++++A+ + ++M +  +H +     P
Sbjct: 130 PDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSP 189

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              +Y+ +I  LC+A RV +A + L  +   G  P   TY ++ D L
Sbjct: 190 NVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGL 236



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 89/194 (45%), Gaps = 22/194 (11%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
             +   V   +D  + M+  G + ++VT S+   LI  L + G V+EA     RM +   
Sbjct: 411 LCKAGKVDEAFDLYEVMAGDGCDADVVTYST---LIDGLCKAGRVDEAHLLLARMVRMGT 467

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P    YN +I  LC + + ++A  L+E+ME     C P   TY ILI   C+       
Sbjct: 468 PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS--NCAPSAVTYNILIHGMCRM------ 519

Query: 261 RKAIRRRIWEANHLF-----RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                 R+  A  L      R +   G   D +AY+ LIDG CK  R+  AL+ F +M  
Sbjct: 520 -----ERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMID 574

Query: 316 KGCIPNRVTYNSFI 329
            G IP+ +TY+  +
Sbjct: 575 NGVIPDHITYSILL 588


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 140/294 (47%), Gaps = 23/294 (7%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDF----LKDMSRRGNGELV 167
           ++KAT+ +  +++      N +TC  +     +  N+K   +     L D S  G     
Sbjct: 579 ISKATQLFLKMQKL-GCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKP 637

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
              S + +I  L + G  +EA   F  MK     PDV +Y  +I+  CR G +  A++L 
Sbjct: 638 NAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLF 697

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            +M   G +  PDV T+++LI   CK G           ++ EAN L  +M+ +G +P+ 
Sbjct: 698 NEMVDIGVQ--PDVTTFSVLIDMLCKEG-----------KVIEANELLEVMIQRGCIPNT 744

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y  L+ G C   RI  A +LF  M K GC+P+ VTY + ++       I  A+E+ +K
Sbjct: 745 VTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKK 804

Query: 348 M-----QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           M     Q   +  P   SY+ II  LC+ GR  EAR+   E+   G +P   +Y
Sbjct: 805 MLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISY 858



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 33/276 (11%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALA 190
           +M CKE  ++ A         + L+ M  RG   ++VT S+   LIK L  +  ++EA  
Sbjct: 243 DMFCKEGKVIEAN--------ELLEVMVHRGCILDIVTYST---LIKGLCMKHRISEATQ 291

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM----ELPGFRCP-PDVYTYT 245
            F  MK+  CRPD  AY  ++  LC+ G  N A  L ++M       G +C  PDV T +
Sbjct: 292 LFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSS 351

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           +LI   CK G           ++ EAN L  +M+ +G + D+V Y+ LI G C  +RI  
Sbjct: 352 MLIDILCKEG-----------KVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISE 400

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN--HGV---PTSSS 360
           A  LF  M K GC P+ +TY + ++       I+ A+++ ++M N    +G+   PT  S
Sbjct: 401 ATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLIS 460

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           Y+ II  LC+  R  EAR+   E+   G +P   +Y
Sbjct: 461 YSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISY 496



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 126/257 (49%), Gaps = 19/257 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L D  R G     T  S + +I  L ++   +EA   F  MK     PDV +Y  +I+
Sbjct: 149 EMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIH 208

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             C  G + KA+ L  +M   G +  PDV T  +LI  +CK G           ++ EAN
Sbjct: 209 GFCHSGKWEKAKCLFNEMLDVGIQ--PDVTTSGVLIDMFCKEG-----------KVIEAN 255

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L  +M+ +G + D+V Y+ LI G C  +RI  A +LF  M K GC P+ + Y + ++  
Sbjct: 256 ELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGL 315

Query: 333 SVVNEIDKAIEMMRKMQN--LNHGV----PTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
               +I+ A+ + ++M N    +G+    P  ++ + +I  LC+ G+V+EA + L  ++ 
Sbjct: 316 CQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQ 375

Query: 387 GGSVPREYTYKLVCDAL 403
            G +    TY  +   L
Sbjct: 376 RGCILDIVTYSTLIKGL 392



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 122/249 (48%), Gaps = 18/249 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L D  R G     T  S + +I  L ++   +EA   F  MK     PDV +Y  +I+
Sbjct: 442 EMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIH 501

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             C  G + KA+ L  +M   G +  PDV T ++LI   CK G           ++ EAN
Sbjct: 502 GFCLSGKWEKAKCLFNEMLDVGIQ--PDVTTSSVLIDMLCKKG-----------KVIEAN 548

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L  +++ +G + DVV    L+ G C  +RI +A +LF  M K GC+PN VT  + ++  
Sbjct: 549 KLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGL 608

Query: 333 SVVNEIDKAIEMMRKMQNLN--HGV---PTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
                I  A+E+ + M +    +G+   P + SY+ II  LC+ GR  EAR+   E+   
Sbjct: 609 CQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKAL 668

Query: 388 GSVPREYTY 396
           G +P   +Y
Sbjct: 669 GVIPDVISY 677



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 129/271 (47%), Gaps = 30/271 (11%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALA 190
           ++ CKE  ++ A         + L+ M +RG   ++VT S+   LIK L  E  ++EA  
Sbjct: 62  DILCKEGKVIEAN--------ELLEVMIQRGCILDIVTYST---LIKGLCMEHRISEATW 110

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTI 246
            F  M++  CRPD   Y  ++  LC+ GN N A  L ++M       G +C P + +Y+I
Sbjct: 111 LFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSI 170

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           +I   CK            RR  EA  LF+ M  +G +PDV++Y  LI G C + + E+A
Sbjct: 171 IIDGLCK-----------DRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKA 219

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPII 365
             LF++M   G  P+  T    I  +    ++ +A E++  M  ++ G +    +Y+ +I
Sbjct: 220 KCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVM--VHRGCILDIVTYSTLI 277

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             LC   R+ EA      +   G  P    Y
Sbjct: 278 KGLCMKHRISEATQLFMSMKKLGCRPDAIAY 308



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 23/207 (11%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM-------ELPGFRCPPDVYTYTILISSYCKY 254
           PD + +N++IN LC V   N+    +  +       ++  +   PDV T ++LI   CK 
Sbjct: 8   PDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKE 67

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           ++ EAN L  +M+ +G + D+V Y+ LI G C  +RI  A  LF  M 
Sbjct: 68  G-----------KVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQ 116

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN--HGV---PTSSSYTPIIHALC 369
           K GC P+ +TY + ++       I+ A+++ ++M N    +G+   PT  SY+ II  LC
Sbjct: 117 KLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLC 176

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTY 396
           +  R  EAR+   E+   G +P   +Y
Sbjct: 177 KDRREDEARELFKEMKAQGMMPDVISY 203



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 25/215 (11%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           +M CKE  ++ A         + L+ M +RG   +  T + T L+K L     ++EA   
Sbjct: 717 DMLCKEGKVIEAN--------ELLEVMIQRGC--IPNTVTYTTLVKGLCMNDRISEATQL 766

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTIL 247
           F +M++  C PDV  Y  ++  LC+ GN   A  L ++M       G    PDV +Y+I+
Sbjct: 767 FMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSII 826

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I   CK+G           R  EA  LF+ M   G +P+V++Y  LI G C++ ++E A 
Sbjct: 827 IDGLCKHG-----------REDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAK 875

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
            LF++M  +G   N VTY+  I  +    +IDKA+
Sbjct: 876 HLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 910



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 106/232 (45%), Gaps = 29/232 (12%)

Query: 185 VNEALATFYRMKQ---------FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           VNE LA    + +         +  RPDV   +++I+ LC+ G   +A  LLE M   G 
Sbjct: 26  VNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRG- 84

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
            C  D+ TY+ LI   C           +  RI EA  LF  M   G  PD + Y  L+ 
Sbjct: 85  -CILDIVTYSTLIKGLC-----------MEHRISEATWLFMSMQKLGCRPDAITYGTLMK 132

Query: 296 GCCKTYRIERALELFDDM-NKKG-----CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           G C+T  I  AL+L  +M N  G     C P  ++Y+  I         D+A E+ ++M+
Sbjct: 133 GLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMK 192

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
                +P   SYT +IH  C +G+  +A+    E++D G  P   T  ++ D
Sbjct: 193 AQGM-MPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLID 243



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 27/126 (21%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M   G  PD   +N LI+  C   R+   L     + ++G IP+ VTY+  IR       
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYS--IR------- 51

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
                             P  ++ + +I  LC+ G+V+EA + L  ++  G +    TY 
Sbjct: 52  ------------------PDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYS 93

Query: 398 LVCDAL 403
            +   L
Sbjct: 94  TLIKGL 99


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 15/262 (5%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V+   +F+++MS + +G      +   L+  L + G V  A+     M Q    
Sbjct: 269 FCKEGRVEDALNFIQEMSNQ-DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDVY YN VI+ LC++G   +A   L+QM      C P+  TY  LIS+ CK        
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEFLDQMITRD--CSPNTVTYNTLISTLCK-------- 377

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  L R++  KG +PDV  +N LI G C T     A+ELF++M  KGC P+
Sbjct: 378 ---ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TYN  I       ++D+A+ M+++M+ L+    +  +Y  +I   C+A ++ EA +  
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQME-LSGCARSVITYNTLIDGFCKANKIREAEEIF 493

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+   G      TY  + D L
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGL 515



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 109/216 (50%), Gaps = 14/216 (6%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A+  F  M+   C PD + YN++I++LC  G  ++A  +L+QMEL G  C   V TY  L
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARSVITYNTL 476

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I  +CK             +I EA  +F  M   G   + V YN LIDG CK+ R+E A 
Sbjct: 477 IDGFCK-----------ANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAS 525

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           +L D M  +G  P++ TYNS + ++    +I KA ++++ M + N   P   +Y  +I  
Sbjct: 526 QLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTS-NGCEPDIVTYGTLISG 584

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           LC+AGRV  A   L  +   G     + Y  V   L
Sbjct: 585 LCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGL 620



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 112/252 (44%), Gaps = 16/252 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + LK M   G    V T +   LI    +   + EA   F  M+      +   YN +I+
Sbjct: 456 NMLKQMELSGCARSVITYNT--LIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLID 513

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+      A  L++QM + G +  PD +TY  L++ +C+ G            I +A 
Sbjct: 514 GLCKSRRVEDASQLMDQMIMEGQK--PDKFTYNSLLTHFCRGG-----------DIKKAA 560

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            + + M   G  PD+V Y  LI G CK  R+E A +L   +  KG       YN  I+  
Sbjct: 561 DIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGL 620

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR-VLEARDFLAELVDGGSVP 391
               +  +AI + R+M   N   P + SY  +   LC  G  + EA DFL EL++ G VP
Sbjct: 621 FRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVP 680

Query: 392 REYTYKLVCDAL 403
              +  ++ + L
Sbjct: 681 EFSSLYMLAEGL 692



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 119/269 (44%), Gaps = 16/269 (5%)

Query: 136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM 195
           +E+ +   R  +   +   L+DM  + +G  + TS    LI+   +  L +E L   + M
Sbjct: 87  EEILLRLGRSGSFDDMRKILEDM--KNSGCEMGTSPFLILIESYAQFELQDEILGVVHWM 144

Query: 196 -KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
              F  +PD + YN ++N L    N         +M + G +  PDV T+ +LI + C+ 
Sbjct: 145 IDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIK--PDVSTFNVLIKALCR- 201

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                       ++  A  +   M   G VPD   +  ++ G  +   ++ AL + + M 
Sbjct: 202 ----------AHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMV 251

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           + GC  + V+ N  +  +     ++ A+  +++M N +   P   ++  +++ LC+AG V
Sbjct: 252 EFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHV 311

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDAL 403
             A + +  ++  G  P  YTY  V   L
Sbjct: 312 KHAIEIMDVMLQEGYDPDVYTYNSVISGL 340



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 31/232 (13%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+   Y  ++  L R G+F+  R +LE M+  G  C      + ILI SY ++ +Q    
Sbjct: 81  PEPALYEEILLRLGRSGSFDDMRKILEDMKNSG--CEMGTSPFLILIESYAQFELQDEIL 138

Query: 262 KAIRRRIWE-----ANHLFRLML--------------------FKGFVPDVVAYNCLIDG 296
             +   I +       H +  ML                      G  PDV  +N LI  
Sbjct: 139 GVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKA 198

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            C+ +++  A+ + +DM   G +P+  T+ + ++ Y    ++D A+ +  +M  +  G  
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQM--VEFGCS 256

Query: 357 TSS-SYTPIIHALCEAGRVLEARDFLAELVD-GGSVPREYTYKLVCDALNAA 406
            S+ S   I+H  C+ GRV +A +F+ E+ +  G  P +YT+  + + L  A
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKA 308


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 134/262 (51%), Gaps = 17/262 (6%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           VK     L DM  +G    +   ++  LI  L +   V+E++A   R      +PDV  Y
Sbjct: 234 VKDACAMLADMIDKGGTPDLMIYNM--LINGLCKADQVDESIALLRRAVSGGIKPDVVTY 291

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           + VI  LCR    ++A  LL  ++  G  CPPDV  Y+ LI   CK G           +
Sbjct: 292 SSVIYGLCRSNRLDEACRLLLYVKSRG--CPPDVILYSTLIDGLCKAG-----------K 338

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + EA  L+ +M   G   DVV Y+ LIDG CK  R++ A  L   M + G  P+ +TYNS
Sbjct: 339 VDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNS 398

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR-DFLAELVD 386
            I+    +N +D+AIE++ +M+  N   P++ +Y  +IH +C   RV  A  D+  E++D
Sbjct: 399 LIKGLCDLNHLDEAIELVEEMERSNCA-PSAVTYNILIHGMCRMERVDSAALDYFQEMID 457

Query: 387 GGSVPREYTYKLVCDALNAAEE 408
            G +P   TY ++ + L  +++
Sbjct: 458 NGVIPDHITYSILLEGLKKSKD 479



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 120/251 (47%), Gaps = 16/251 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L   G +  A+A F  M   R   DV ++N+++  LCR G    A     +M+   
Sbjct: 51  LLDGLFRTGKLERAMALFQEMLDRRSH-DVISFNILVTGLCRAGKIETALEFFRKMD--- 106

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            RC P+V TY++LI   CK             R+ +A  L   M  +G  PDV+ Y  L+
Sbjct: 107 DRCSPNVITYSVLIDGLCK-----------ANRVSQAVELLESMKARGCSPDVITYTILV 155

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK  ++  A E+  +M   GC+PN VTYNS +        +  A+ +MR M      
Sbjct: 156 DGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDM-TCRGC 214

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
            P   +Y  +I  LC+ GRV +A   LA+++D G  P    Y ++ + L  A++      
Sbjct: 215 TPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIA 274

Query: 415 GLRKRIRDGIE 425
            LR+ +  GI+
Sbjct: 275 LLRRAVSGGIK 285



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 120/266 (45%), Gaps = 18/266 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             + N V    + L+ M  RG    V T ++  L+  L +E  V  A      M    C 
Sbjct: 123 LCKANRVSQAVELLESMKARGCSPDVITYTI--LVDGLCKESKVAAAWEVLREMLDAGCV 180

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  YN +++ LCR    + A  L+  M   G  C P+V TY  LI   CK G      
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRG--CTPNVVTYGTLIDGLCKVG------ 232

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A  +   M+ KG  PD++ YN LI+G CK  +++ ++ L       G  P+
Sbjct: 233 -----RVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPD 287

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDF 380
            VTY+S I      N +D+A  ++  ++  + G P     Y+ +I  LC+AG+V EA D 
Sbjct: 288 VVTYSSVIYGLCRSNRLDEACRLLLYVK--SRGCPPDVILYSTLIDGLCKAGKVDEAFDL 345

Query: 381 LAELVDGGSVPREYTYKLVCDALNAA 406
              +   G      TY  + D L  A
Sbjct: 346 YEVMTGDGCDADVVTYSTLIDGLCKA 371



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 14/167 (8%)

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           C P+V TY  LI   CK                 A  LF  M      P +V YN L+DG
Sbjct: 6   CEPNVVTYNSLIDGLCK-----------NNEPDRAQELFEHMKSVECSPSMVTYNTLLDG 54

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
             +T ++ERA+ LF +M  +    + +++N  +       +I+ A+E  RKM   +   P
Sbjct: 55  LFRTGKLERAMALFQEMLDRRS-HDVISFNILVTGLCRAGKIETALEFFRKMD--DRCSP 111

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              +Y+ +I  LC+A RV +A + L  +   G  P   TY ++ D L
Sbjct: 112 NVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGL 158



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G  P+VV YN LIDG CK    +RA ELF+ M    C P+ VTYN+ +       ++++A
Sbjct: 5   GCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERA 64

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           + + ++M  L+       S+  ++  LC AG++  A +F  ++ D  S P   TY ++ D
Sbjct: 65  MALFQEM--LDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCS-PNVITYSVLID 121

Query: 402 ALNAAEEPS 410
            L  A   S
Sbjct: 122 GLCKANRVS 130



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 16/156 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
             +   V   +D  + M+  G + ++VT S+   LI  L + G V+EA     RM +   
Sbjct: 333 LCKAGKVDEAFDLYEVMTGDGCDADVVTYST---LIDGLCKAGRVDEAHLLLARMVRMGT 389

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P    YN +I  LC + + ++A  L+E+ME     C P   TY ILI   C+       
Sbjct: 390 PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERS--NCAPSAVTYNILIHGMCR------- 440

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
              + R    A   F+ M+  G +PD + Y+ L++G
Sbjct: 441 ---MERVDSAALDYFQEMIDNGVIPDHITYSILLEG 473



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           M   GC PN VTYNS I      NE D+A E+   M+++    P+  +Y  ++  L   G
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECS-PSMVTYNTLLDGLFRTG 59

Query: 373 RVLEARDFLAELVD 386
           ++  A     E++D
Sbjct: 60  KLERAMALFQEMLD 73


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 147/280 (52%), Gaps = 37/280 (13%)

Query: 152 WDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           +D   +M  +G + ++VT S++     +LG+   +N+A+  F +M      PDVY ++++
Sbjct: 216 FDLYSEMVSKGISPDVVTYSALISGFCILGK---LNDAIGLFNKMISEEINPDVYTFSIL 272

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC------------KYGMQT 258
           ++  C+ G   +A+ +L  M   G +  PDV TY  L+  YC                Q 
Sbjct: 273 VDGFCKEGRVKEAKNVLAMMMKQGIK--PDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQG 330

Query: 259 GCRKAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           G    ++            +++ EA +LF+ M  K  +PDVV YN LIDG CK+ +I  A
Sbjct: 331 GVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYA 390

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
           L+L D+M+ +G   +++TYNS +      +++DKAI ++ KM+  + G+ P   +YT +I
Sbjct: 391 LKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMK--DEGIQPDMYTYTILI 448

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CD 401
             LC+ GR+ +A++   +L+  G     YTY ++    CD
Sbjct: 449 DGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCD 488



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 91/184 (49%), Gaps = 16/184 (8%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           ++VT +S   LI  L + G ++ AL     M       D   YN +++ALC+    +KA 
Sbjct: 370 DVVTYNS---LIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAI 426

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            LL +M+  G +  PD+YTYTILI   CK G           R+ +A ++F  +L KG+ 
Sbjct: 427 ALLTKMKDEGIQ--PDMYTYTILIDGLCKGG-----------RLKDAQNIFEDLLVKGYN 473

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
             V  Y  +I G C     ++AL L   M   GCIPN  TY   I      +E D A ++
Sbjct: 474 ITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKL 533

Query: 345 MRKM 348
           +R+M
Sbjct: 534 LREM 537



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 18/242 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG      +   LI    + G  + + + F  + +    P+      +I  LC  G  ++
Sbjct: 85  NGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQ 144

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A    +++   GF    +   Y  LI+  CK G  +   + +RR              K 
Sbjct: 145 ALHFHDKVVALGFHL--NKVCYGTLINGLCKVGQTSAALQLLRRVDG-----------KL 191

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+VV YN +ID  CK   +  A +L+ +M  KG  P+ VTY++ I  + ++ +++ AI
Sbjct: 192 VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAI 251

Query: 343 EMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
            +  KM  + +N   P   +++ ++   C+ GRV EA++ LA ++  G  P   TY  + 
Sbjct: 252 GLFNKMISEEIN---PDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLM 308

Query: 401 DA 402
           D 
Sbjct: 309 DG 310



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L R M F G   D+V +N LI+   +      +  +F ++ KKG  PN +T  + I+   
Sbjct: 78  LHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLC 137

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV-PR 392
           +  +I +A+    K+  L   +     Y  +I+ LC+ G+   A   L   VDG  V P 
Sbjct: 138 LKGQIHQALHFHDKVVALGFHL-NKVCYGTLINGLCKVGQTSAALQLLRR-VDGKLVQPN 195

Query: 393 EYTYKLVCDAL 403
              Y  + D++
Sbjct: 196 VVMYNTIIDSM 206


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 126/260 (48%), Gaps = 16/260 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R N+  G  +FLK+M+ R     V T ++  LI  L +    ++A    + M      PD
Sbjct: 238 RKNDCDGALEFLKEMNERKVAPDVFTYNI--LIDGLCKASKTDKASEMLHEMVDRGVTPD 295

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              +N +++ LC+ G F +A  LL  M      C P   TY  LIS  CK          
Sbjct: 296 TVTFNSIMDGLCKAGKFERAHSLLAVM--AERNCRPSCCTYNTLISGLCK---------- 343

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
            ++ +  A  L    +  GFVPDVV Y+ L DG CK  RI+ A EL  +M+ KGC PN V
Sbjct: 344 -QQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLV 402

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           TYN+ I      ++ +KA E++  + +    VP   +YT I+  LC+ GR+ +A   +  
Sbjct: 403 TYNTLIDGLCKASKTEKAYELLESLVSSGF-VPDVVTYTIIVDGLCKEGRLDKALKMVEG 461

Query: 384 LVDGGSVPREYTYKLVCDAL 403
           ++  G  P   TY  + + L
Sbjct: 462 MLKRGCTPSVITYTALMEGL 481



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 126/252 (50%), Gaps = 24/252 (9%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           +T +  C ++ L E G  +   A F RM      PD Y Y++VI +LC++   +KA  +L
Sbjct: 124 STFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTML 183

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++ ++ GF+  P+V  YTIL  ++CK G           R+ +A  +FR +      PD 
Sbjct: 184 DKAKVRGFK--PEVSVYTILTRAFCKTG-----------RLKDALEIFRNIP----SPDA 226

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           +AYN +I G C+    + ALE   +MN++   P+  TYN  I      ++ DKA EM+ +
Sbjct: 227 IAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHE 286

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDA 402
           M  ++ GV P + ++  I+  LC+AG+   A   LA + +    P   TY      +C  
Sbjct: 287 M--VDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQ 344

Query: 403 LNAAEEPSLLDD 414
            N      L+D+
Sbjct: 345 QNVDRAKDLVDE 356



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 118/265 (44%), Gaps = 25/265 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +  NV    D + +    G    V T S+  L   L + G ++EA      M    C 
Sbjct: 341 LCKQQNVDRAKDLVDEFVSSGFVPDVVTYSI--LADGLCKRGRIDEAFELVKEMSGKGCT 398

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  YN +I+ LC+     KA  LLE +   GF   PDV TYTI++   CK G      
Sbjct: 399 PNLVTYNTLIDGLCKASKTEKAYELLESLVSSGF--VPDVVTYTIIVDGLCKEG------ 450

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A  +   ML +G  P V+ Y  L++G C+T R++ A  +F +M  K C  +
Sbjct: 451 -----RLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTAD 505

Query: 322 RVTYNSFIRYY---SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            + Y S +  Y   S   E  K ++ +R       G P    Y  ++   C+ GR+ E  
Sbjct: 506 ALAYVSLVNGYCKSSRTKEAQKVVDGIR-------GTPYIDVYNALMDGYCKEGRLDEIP 558

Query: 379 DFLAELVDGGSVPREYTYKLVCDAL 403
           +   ++   G VP   TY +V D L
Sbjct: 559 NVFEDMACRGCVPNIKTYNIVMDGL 583



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 113/239 (47%), Gaps = 18/239 (7%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           S  T L +   + G + +AL  F  +      PD  AYN +I+  CR  + + A   L++
Sbjct: 196 SVYTILTRAFCKTGRLKDALEIFRNIPS----PDAIAYNAIIHGHCRKNDCDGALEFLKE 251

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M     +  PDV+TY ILI   CK             +  +A+ +   M+ +G  PD V 
Sbjct: 252 MN--ERKVAPDVFTYNILIDGLCKAS-----------KTDKASEMLHEMVDRGVTPDTVT 298

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           +N ++DG CK  + ERA  L   M ++ C P+  TYN+ I        +D+A +++ +  
Sbjct: 299 FNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFV 358

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           +    VP   +Y+ +   LC+ GR+ EA + + E+   G  P   TY  + D L  A +
Sbjct: 359 SSGF-VPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASK 416



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 115/250 (46%), Gaps = 19/250 (7%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG ++E    F  M    C P++  YN+V++ LC+ G  ++A   LE M   G  C PD
Sbjct: 550 KEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG--CVPD 607

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           V +Y I+I          G  KA + +  EA  +   M+  G  PD V YN L+   CK 
Sbjct: 608 VVSYNIIID---------GLFKASKPK--EARQVLDQMIQAGIPPDAVTYNTLMAQFCKE 656

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R + A+ +  +M K G  P+ VTYN+ I   S  N +  A E+M +M      V   ++
Sbjct: 657 ERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTT 716

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGL 416
           Y  II  LC+ G + +A   +  +   G      TY +  D L       E  SLL +  
Sbjct: 717 YNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSE-- 774

Query: 417 RKRIRDGIEY 426
              +RD + Y
Sbjct: 775 MDTLRDEVSY 784



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 21/246 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTT-SSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            ++ N +   ++ + +M R  NG +V+  ++   +I  L +EG + +AL     M     
Sbjct: 688 LSQTNRLGDAYELMHEMLR--NGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGV 745

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
             +   YN+ I+ LC+ G  ++A  LL +M+    R   D  +YT +I   CK       
Sbjct: 746 EANTVTYNIFIDRLCKEGRLDEASSLLSEMDT--LR---DEVSYTTVIIGLCK------- 793

Query: 261 RKAIRRRIWEANHLFRLML-FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                 ++  A+ L R M+  KG       +N LID   KT R++ AL L   M ++GC 
Sbjct: 794 ----AEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCS 849

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ +TYN  I     ++++DKA E+  +M  +   V +S SYT +I+ LC  GR  EA  
Sbjct: 850 PSVITYNMVITCLCKLDKVDKAWELFDEMA-VRGIVASSVSYTVLIYGLCGQGRGKEALQ 908

Query: 380 FLAELV 385
            L E+ 
Sbjct: 909 VLEEMA 914



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 143/369 (38%), Gaps = 97/369 (26%)

Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           ++ QKV  G+ + T +        D +  E    E+  VF             +DM+ RG
Sbjct: 523 KEAQKVVDGI-RGTPYIDVYNALMDGYCKEGRLDEIPNVF-------------EDMACRG 568

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
               + T ++  ++  L + G V+EA      M    C PDV +YN++I+ L +     +
Sbjct: 569 CVPNIKTYNI--VMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKE 626

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           AR +L+QM   G   PPD  TY  L++ +CK             R  +A  + + M+  G
Sbjct: 627 ARQVLDQMIQAGI--PPDAVTYNTLMAQFCK-----------EERFDDAVGILKNMIKAG 673

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI----------------------- 319
             PD V YN LI G  +T R+  A EL  +M + GC+                       
Sbjct: 674 VDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQA 733

Query: 320 -------------PNRVTYNSFI--------------------------RYYSVV----- 335
                         N VTYN FI                           Y +V+     
Sbjct: 734 LLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCK 793

Query: 336 -NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
             ++D+A ++ R+M  +     TS ++  +I A  +  R+ EA   L  +V  G  P   
Sbjct: 794 AEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVI 853

Query: 395 TYKLVCDAL 403
           TY +V   L
Sbjct: 854 TYNMVITCL 862



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 115/277 (41%), Gaps = 24/277 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +   V   + FL+ M   G    V + ++  +I  L +     EA     +M Q    
Sbjct: 583 LCKHGKVDEAFPFLESMHSAGCVPDVVSYNI--IIDGLFKASKPKEARQVLDQMIQAGIP 640

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN ++   C+   F+ A  +L+ M   G    PD  TY  LIS   +        
Sbjct: 641 PDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGV--DPDNVTYNTLISGLSQ-------- 690

Query: 262 KAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                R+ +A  L   ML  G  V     YN +ID  CK   +++AL L D M   G   
Sbjct: 691 ---TNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEA 747

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N VTYN FI        +D+A  ++ +M  L   V    SYT +I  LC+A ++  A   
Sbjct: 748 NTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEV----SYTTVIIGLCKAEQLDRASKL 803

Query: 381 LAELVD-GGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
             E+V   G     +T+ L+ DA    +    LD+ L
Sbjct: 804 AREMVAVKGLCITSHTFNLLIDAFTKTKR---LDEAL 837



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 5/151 (3%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +F  ML  G+ PD   Y+ +I   C+  +I++A  + D    +G  P    Y    R + 
Sbjct: 147 MFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFC 206

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
               +  A+E+ R + +     P + +Y  IIH  C       A +FL E+ +    P  
Sbjct: 207 KTGRLKDALEIFRNIPS-----PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDV 261

Query: 394 YTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           +TY ++ D L  A +     + L + +  G+
Sbjct: 262 FTYNILIDGLCKASKTDKASEMLHEMVDRGV 292



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 72/191 (37%), Gaps = 48/191 (25%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----- 216
           G+G    T +    I  L +EG ++EA +    M   R   D  +Y  VI  LC+     
Sbjct: 742 GHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR---DEVSYTTVIIGLCKAEQLD 798

Query: 217 -------------------------VGNFNKARFLLEQMELPGFR----CPPDVYTYTIL 247
                                    +  F K + L E + L G      C P V TY ++
Sbjct: 799 RASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMV 858

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I+  CK             ++ +A  LF  M  +G V   V+Y  LI G C   R + AL
Sbjct: 859 ITCLCKLD-----------KVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEAL 907

Query: 308 ELFDDMNKKGC 318
           ++ ++M    C
Sbjct: 908 QVLEEMASSDC 918


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 126/259 (48%), Gaps = 17/259 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG-EEGLVNEALATFYRMKQFR 199
           +    N +   + F K+M  R  G   T +S+  LIK L   +G V+  L  F+ M +  
Sbjct: 130 ILVEENQLNLAFKFYKNM--REIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRG 187

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C PD Y Y  +I+ LCR G  ++A+ L  +M      C P V TYT LI+  C       
Sbjct: 188 CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD--CAPTVVTYTSLINGLCG------ 239

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                 + + EA      M  KG  P+V  Y+ L+DG CK  R  +A+ELF+ M  +GC 
Sbjct: 240 -----SKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCR 294

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN VTY + I       +I +A+E++ +M NL    P +  Y  +I   C   +  EA +
Sbjct: 295 PNMVTYTTLITGLCKEQKIQEAVELLDRM-NLQGLKPDAGLYGKVISGFCAVSKFREAAN 353

Query: 380 FLAELVDGGSVPREYTYKL 398
           FL E++ GG  P   T+ +
Sbjct: 354 FLDEMILGGITPNRLTWNI 372



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 282 GFVPDVVAYNCLIDGCCKT-YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           G  P V + N LI   C+    ++  L++F +M K+GC P+  TY + I        ID+
Sbjct: 151 GLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDE 210

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A ++  +M       PT  +YT +I+ LC +  V EA  ++ E+   G  P  +TY  + 
Sbjct: 211 AKKLFTEMVE-KDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLM 269

Query: 401 DAL 403
           D L
Sbjct: 270 DGL 272



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 10/187 (5%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G +++ +  F   M+R     +VT    T LI  L +E  + EA+    RM     +PD 
Sbjct: 276 GRSLQAMELFEMMMARGCRPNMVT---YTTLITGLCKEQKIQEAVELLDRMNLQGLKPDA 332

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             Y  VI+  C V  F +A   L++M L G    P+  T+ I + +  +  ++  C    
Sbjct: 333 GLYGKVISGFCAVSKFREAANFLDEMILGGI--TPNRLTWNIHVKTSNEV-VRGLCTNYP 389

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
            R    A  L+  M  +G   +V   + L+   CK    ++A++L D++   GCIPN+ T
Sbjct: 390 SR----AFTLYLSMRSRGISVEVETLDSLVKCLCKKGEFQKAVQLVDEIVTDGCIPNKGT 445

Query: 325 YNSFIRY 331
           +   I +
Sbjct: 446 WKLLIGH 452


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 16/228 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+  LG+EG V EA +    M +   +PDV+ YN ++N    V    KA+ +   M L
Sbjct: 521 TILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSL 580

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PDV+TYTILI+ +CK  M           + EA +LF+ M  K  VPD V Y+ 
Sbjct: 581 MGVT--PDVHTYTILINGFCKSKM-----------VDEALNLFKEMHQKNMVPDTVTYSS 627

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG CK+ RI    +L D+M  +G   + +TYNS I        +DKAI +  KM+  +
Sbjct: 628 LVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMK--D 685

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            G+ P + ++T ++  LC+ GR+ +A++   +L+  G     Y Y ++
Sbjct: 686 QGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVM 733



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 14/231 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +I  L +  LV+EA   F  M       DV  Y+ +I   C VG   +A  LL +M L
Sbjct: 451 STIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVL 510

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
                 PDV TYTIL+ +  K G           ++ EA  +  +ML     PDV  YN 
Sbjct: 511 KTIN--PDVRTYTILVDALGKEG-----------KVKEAKSVLAVMLKACVKPDVFTYNT 557

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L++G    Y +++A  +F+ M+  G  P+  TY   I  +     +D+A+ + ++M   N
Sbjct: 558 LMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKN 617

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             VP + +Y+ ++  LC++GR+    D + E+ D G      TY  + D L
Sbjct: 618 M-VPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGL 667



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 15/207 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V    +  K+M ++    +  T + + L+  L + G ++        M+     
Sbjct: 597 FCKSKMVDEALNLFKEMHQKN--MVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQP 654

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            DV  YN +I+ LC+ G+ +KA  L  +M+  G R  P+ +T+TIL+   CK G      
Sbjct: 655 ADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIR--PNTFTFTILLDGLCKGG------ 706

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A  +F+ +L KG+  DV  YN +I G CK   +E AL +   M + GCIPN
Sbjct: 707 -----RLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPN 761

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            VT++  I      +E DKA +++R+M
Sbjct: 762 AVTFDIIINALFKKDENDKAEKLLRQM 788



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 15/222 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P+V  Y+ +I+ALC+    ++A  L  +M + G     DV TY+ LI  +C  G     
Sbjct: 444 KPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGIS--ADVVTYSTLIYGFCIVG----- 496

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA  L   M+ K   PDV  Y  L+D   K  +++ A  +   M K    P
Sbjct: 497 ------KLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKP 550

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +  TYN+ +  Y +V E+ KA  +   M +L    P   +YT +I+  C++  V EA + 
Sbjct: 551 DVFTYNTLMNGYLLVYEVKKAQHVFNAM-SLMGVTPDVHTYTILINGFCKSKMVDEALNL 609

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
             E+     VP   TY  + D L  +   S + D L   +RD
Sbjct: 610 FKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWD-LIDEMRD 650



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 14/216 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    +  +V+EAL  F  M Q    PD   Y+ +++ LC+ G  +    L+++M  
Sbjct: 591 TILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRD 650

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G   P DV TY  LI   CK G            + +A  LF  M  +G  P+   +  
Sbjct: 651 RG--QPADVITYNSLIDGLCKNG-----------HLDKAIALFNKMKDQGIRPNTFTFTI 697

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG CK  R++ A E+F D+  KG   +   YN  I  +     +++A+ M+ KM+  N
Sbjct: 698 LLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEE-N 756

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             +P + ++  II+AL +     +A   L +++  G
Sbjct: 757 GCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARG 792



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 14/185 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P+V  YN +I+ALC+    ++A  L  +M + G     +V TY+ LI  +C  G     
Sbjct: 130 KPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGIS--ANVVTYSTLIYGFCIVG----- 182

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA  L  +M+ K   P+V  YN L+D  CK  +++ A  +   M K     
Sbjct: 183 ------KLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKS 236

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N +TY++ +  Y +V E+ KA  +   M +L    P   SY  +I+  C+  RV +A + 
Sbjct: 237 NVITYSTLMDGYFLVYEVKKAQHVFNAM-SLMGVTPDVHSYNIMINGFCKIKRVDKALNL 295

Query: 381 LAELV 385
             E++
Sbjct: 296 FKEMI 300



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 112/274 (40%), Gaps = 52/274 (18%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-------------- 230
           V +A   F  M      PDV++YN++IN  C++   +KA  L ++M              
Sbjct: 254 VKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKI 313

Query: 231 --------------------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
                               EL G +  PD++T  ILI+ +C  G  T     + +    
Sbjct: 314 LDSFAKMKHYSTAVSLSHRLELKGIQ--PDLFTLNILINCFCHMGQITFGFSVLAK---- 367

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
                  +L +G+ P  V  N LI G C   ++++AL   D +  +G   N+V+Y + I 
Sbjct: 368 -------ILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLIN 420

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
               + +   AI+++RK+       P    Y+ II ALC+   V EA    +E+   G  
Sbjct: 421 GVCKIGDTRGAIKLLRKIDG-RLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGIS 479

Query: 391 PREYTYKLV----CDALNAAEEPSLLDDGLRKRI 420
               TY  +    C      E   LL++ + K I
Sbjct: 480 ADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTI 513



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 18/197 (9%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P     N +I  LC  G   KA    +++   GF+   +  +Y  LI+  CK G   G  
Sbjct: 375 PSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQL--NQVSYATLINGVCKIGDTRGAI 432

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
           K +R+                  P+V  Y+ +ID  CK   +  A  LF +M  KG   +
Sbjct: 433 KLLRKIDGRLTK-----------PNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISAD 481

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
            VTY++ I  + +V ++ +AI ++ +M  + +N   P   +YT ++ AL + G+V EA+ 
Sbjct: 482 VVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTIN---PDVRTYTILVDALGKEGKVKEAKS 538

Query: 380 FLAELVDGGSVPREYTY 396
            LA ++     P  +TY
Sbjct: 539 VLAVMLKACVKPDVFTY 555



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 24/206 (11%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD    N +I  LC  G   +A    +++   GF+   +  +Y  LI+  C+ G      
Sbjct: 61  PDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQL--NQVSYATLINGVCRIGDTRAAI 118

Query: 262 KAIRR---RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
           K +R+   R+ +              P+V  YN +ID  CK   +  A  LF +M  KG 
Sbjct: 119 KFLRKIDGRLAK--------------PNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGI 164

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLE 376
             N VTY++ I  + +V ++ +A+ ++  M  + +N   P   +Y  ++ ALC+ G+V E
Sbjct: 165 SANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTIN---PNVCTYNILVDALCKEGKVKE 221

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDA 402
           A+  LA ++         TY  + D 
Sbjct: 222 AKSVLAVMLKACVKSNVITYSTLMDG 247



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 13/174 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L +  LV+EA   F  M       +V  Y+ +I   C VG   +A  LL  M L  
Sbjct: 139 IIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKT 198

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V TY IL+ + CK G           ++ EA  +  +ML      +V+ Y+ L+
Sbjct: 199 IN--PNVCTYNILVDALCKEG-----------KVKEAKSVLAVMLKACVKSNVITYSTLM 245

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           DG    Y +++A  +F+ M+  G  P+  +YN  I  +  +  +DKA+ + ++M
Sbjct: 246 DGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEM 299



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 16/168 (9%)

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
           PPD  T   LI   C           ++ ++ EA H    +L +GF  + V+Y  LI+G 
Sbjct: 60  PPDTVTLNTLIKGLC-----------LKGQVKEALHFHDKLLAQGFQLNQVSYATLINGV 108

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGV 355
           C+      A++    ++ +   PN   YN+ I        + +A  +  +M  + ++  V
Sbjct: 109 CRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANV 168

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            T   Y+ +I+  C  G++ EA   L  +V     P   TY ++ DAL
Sbjct: 169 VT---YSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDAL 213



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           +L +G+ PD V  N LI G C   +++ AL   D +  +G   N+V+Y + I     + +
Sbjct: 54  ILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGD 113

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
              AI+ +RK+       P    Y  II ALC+   V EA    +E+   G      TY
Sbjct: 114 TRAAIKFLRKIDG-RLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTY 171


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 134/277 (48%), Gaps = 16/277 (5%)

Query: 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN 186
           DF  N +T   +     + N V+   +  + ++ +G   L    +   LI+ L       
Sbjct: 381 DFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI--LPDVCTFNSLIQGLCLTNNHR 438

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
            A+  F  MK   C PD + YN++I++LC  G   +A  LL++ME  G  C  +V TY  
Sbjct: 439 LAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG--CSRNVVTYNT 496

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI  +CK            +RI EA  +F  M  +G   +VV YN LIDG CK  R+E A
Sbjct: 497 LIDGFCK-----------NKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEA 545

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
            +L D M  +G  P++ TYNS + Y+    +I KA ++++ M + N   P S +Y  +I 
Sbjct: 546 AQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTS-NGCEPDSVTYGTLIL 604

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            L +AGRV  A   L  +   G V    TY  V  AL
Sbjct: 605 GLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKAL 641



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 169 TSSVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           +S+VT  + V G  +EG + E L+    M     RPD + +N ++N LCR+G+   A  +
Sbjct: 279 SSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEI 338

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
           L+ M   GF   PD++TY  LI   CK G            + EA  +   M+ + F P+
Sbjct: 339 LDVMLQEGF--DPDIFTYNSLIFGLCKLG-----------EVEEAVEILNQMILRDFSPN 385

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            V YN LI   CK  ++E A EL   +  KG +P+  T+NS I+   + N    A+E+  
Sbjct: 386 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFE 445

Query: 347 KMQNLN-HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +M+    H  P   +Y  +I +LC  GR+ EA   L E+   G      TY  + D  
Sbjct: 446 EMKTKGCH--PDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGF 501



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 112/239 (46%), Gaps = 16/239 (6%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI  L +E  V EA      +      PDV  +N +I  LC   N   A  L E
Sbjct: 386 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFE 445

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M+  G  C PD +TY +LI S C  G           R+ EA  L + M   G   +VV
Sbjct: 446 EMKTKG--CHPDEFTYNMLIDSLCSRG-----------RLEEALSLLKEMESSGCSRNVV 492

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN LIDG CK  RIE A E+FD+M  +G   N VTYN+ I        +++A ++M +M
Sbjct: 493 TYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQM 552

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
             L  G+ P   +Y  ++   C AG + +A D +  +   G  P   TY  +   L+ A
Sbjct: 553 --LMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKA 609



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 16/234 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L++   EEG +N AL    +M    C       NV+++  C+ G   +    +++M
Sbjct: 248 TFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEM 307

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              GFR  PD +T+  L++  C+ G            +  A  +  +ML +GF PD+  Y
Sbjct: 308 SNEGFR--PDRFTFNSLVNGLCRIG-----------HVKHALEILDVMLQEGFDPDIFTY 354

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI G CK   +E A+E+ + M  +   PN VTYN+ I      N++++A E+ R +  
Sbjct: 355 NSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLT- 413

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            + G+ P   ++  +I  LC       A +   E+   G  P E+TY ++ D+L
Sbjct: 414 -SKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSL 466



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 112/253 (44%), Gaps = 17/253 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            LK+M   G    V T +   LI    +   + EA   F  M+      +V  YN +I+ 
Sbjct: 478 LLKEMESSGCSRNVVTYNT--LIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDG 535

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+     +A  L++QM + G +  PD +TY  L++ +C+ G            I +A  
Sbjct: 536 LCKNRRVEEAAQLMDQMLMEGLK--PDKFTYNSLLTYFCRAG-----------DIKKAAD 582

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           + + M   G  PD V Y  LI G  K  R+E A  L   +  KG +    TYN  I+   
Sbjct: 583 IVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALF 642

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR-VLEARDFLAELVDGGSVPR 392
                 +A+ + R+M       P + +Y  +   LC  G  + EA DFL E+ D G +P 
Sbjct: 643 REKRTSEAVRLFREMME-KGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKGFLPD 701

Query: 393 EYTYKLVCDALNA 405
             ++ ++ + L A
Sbjct: 702 FSSFLMLAEGLCA 714



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 124/272 (45%), Gaps = 18/272 (6%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATF 192
           T K++     R ++   + D L   S++ N   V +S +   +++ LG++G         
Sbjct: 71  TPKQLRDALRRQSDEDSILDLLDWASKQPN--FVPSSVIYEEVLRKLGKDGSFGSMRRVL 128

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
             MK   C      + ++I +  +   F++A  +++ ME   F    D +TY  L++   
Sbjct: 129 QEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIME-EEFGLKLDAFTYNFLLNVLV 187

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
             G +    + +  R          M+ +G  PDV  +N LI   C+ ++I  A+ + ++
Sbjct: 188 D-GNKLKLVEIVNSR----------MVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEE 236

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEA 371
           M   G  P+  T+ + ++ +     ++ A+ +  +M  +  G P+S+ +   ++H  C+ 
Sbjct: 237 MGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQM--VAAGCPSSNVTVNVLVHGYCKE 294

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           GR+ E   F+ E+ + G  P  +T+  + + L
Sbjct: 295 GRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGL 326



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 16/177 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F R  ++K   D ++ M+  G   + VT  ++   +   G   L +  L T  ++K    
Sbjct: 571 FCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRT-VQLKGMVL 629

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P    YN VI AL R    ++A  L  +M   G   PPD  TY ++    C  G   G 
Sbjct: 630 APQ--TYNPVIKALFREKRTSEAVRLFREMMEKG--DPPDAVTYKVVFRGLCSGGGPIG- 684

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    EA      M  KGF+PD  ++  L +G C     +  ++L + + K+ 
Sbjct: 685 ---------EAVDFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVNRVMKQA 732



 Score = 41.6 bits (96), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-FNK 222
           G ++   +   +IK L  E   +EA+  F  M +    PD   Y VV   LC  G    +
Sbjct: 626 GMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGE 685

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           A   L +M   GF   PD  ++ +L    C   M+    K + R + +AN
Sbjct: 686 AVDFLVEMTDKGFL--PDFSSFLMLAEGLCALSMEDTLIKLVNRVMKQAN 733


>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
 gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
          Length = 341

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 112/224 (50%), Gaps = 10/224 (4%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L + G   EAL   + M    C PD+Y YN++INALC+VG    A+ L+E M+     CP
Sbjct: 49  LCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQ--ARDCP 106

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
            D+ TY  LI   C+ G         R R+  A  LF  M+ KG  P  V Y  +ID   
Sbjct: 107 TDIVTYNTLIHGLCRKGNG-------RFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALL 159

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           +    E+A ++ D M++ GC  + VTYN  I  ++    +DKA+++  +M      +P  
Sbjct: 160 RVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPT-RGCIPDV 218

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +Y  ++   C+AG+V EA    AE+   G  P   TY  + DA
Sbjct: 219 VTYNSVVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDA 262



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 22/247 (8%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           K   D L  M+       + T ++  LI  L + G + +A      M+   C  D+  YN
Sbjct: 56  KEALDLLHSMATTSCAPDIYTYNI--LINALCKVGRLEDAQGLVEMMQARDCPTDIVTYN 113

Query: 209 VVINALCRVGN----FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
            +I+ LCR GN      +A  L E+M   G    P   TYT++I +  +  M        
Sbjct: 114 TLIHGLCRKGNGRFRVERAFRLFEEMVDKGH--TPTSVTYTVVIDALLRVKMD------- 164

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
                +A  +  LM   G   D+V YN LI+   K   +++A++LF +M  +GCIP+ VT
Sbjct: 165 ----EQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVT 220

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAE 383
           YNS +  +    ++++A ++  +M+    G+ P   +YT I  A  +AGR+ +A  +L E
Sbjct: 221 YNSVVDGFCKAGKVEEANKLFAEMK--ARGIFPNGRTYTSITDACLKAGRMQDAHAYLVE 278

Query: 384 LVDGGSV 390
           +   G V
Sbjct: 279 MRKEGLV 285



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 105/220 (47%), Gaps = 15/220 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V  A   F  M      P    Y VVI+AL RV    +A+ +L+ M   G  C  D+ TY
Sbjct: 129 VERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENG--CAFDLVTY 186

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            +LI+ + K GM           + +A  LF  M  +G +PDVV YN ++DG CK  ++E
Sbjct: 187 NMLINRFAKAGM-----------MDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVE 235

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A +LF +M  +G  PN  TY S          +  A   + +M+    G+  + SY  +
Sbjct: 236 EANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMR--KEGLVDAISYVAL 293

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           I  +C+ G+       L E+++ G  P   T+ +V +AL+
Sbjct: 294 ISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALS 333



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 17/215 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G   T+ + T +I  L    +  +A      M +  C  D+  YN++IN   + G  +KA
Sbjct: 143 GHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKA 202

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L   +E+P   C PDV TY  ++  +CK G           ++ EAN LF  M  +G 
Sbjct: 203 MDLF--VEMPTRGCIPDVVTYNSVVDGFCKAG-----------KVEEANKLFAEMKARGI 249

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+   Y  + D C K  R++ A     +M K+G + + ++Y + I     + +     +
Sbjct: 250 FPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLV-DAISYVALISTICKLGKGKLGFQ 308

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
           ++R+M  L  G  P   ++  +  AL +     +A
Sbjct: 309 LLREM--LEKGFKPNLVTFNVVFEALSKESNTDDA 341



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 71/170 (41%), Gaps = 18/170 (10%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
            + +TY+ ++  YC+ G              +A  L   M       +   YN ++   C
Sbjct: 2   ANAFTYSTIVRGYCEDG-----------ETRQALALLEHMKNAEVPANAKLYNIILTHLC 50

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K  + + AL+L   M    C P+  TYN  I     V  ++ A  ++  MQ  +   PT 
Sbjct: 51  KHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARD--CPTD 108

Query: 359 -SSYTPIIHALCEAG----RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +Y  +IH LC  G    RV  A     E+VD G  P   TY +V DAL
Sbjct: 109 IVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDAL 158


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 15/262 (5%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V+   +F+++MS + +G      +   L+  L + G V  A+     M Q    
Sbjct: 269 FCKEGRVEDALNFIQEMSNQ-DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDVY YN VI+ LC++G   +A  +L+QM      C P+  TY  LIS+ CK        
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD--CSPNTVTYNTLISTLCK-------- 377

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  L R++  KG +PDV  +N LI G C T     A+ELF++M  KGC P+
Sbjct: 378 ---ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TYN  I       ++D+A+ M+++M+ L+    +  +Y  +I   C+A +  EA +  
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQME-LSGCARSVITYNTLIDGFCKANKTREAEEIF 493

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+   G      TY  + D L
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGL 515



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 102/194 (52%), Gaps = 14/194 (7%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A+  F  M+   C PD + YN++I++LC  G  ++A  +L+QMEL G  C   V TY  L
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARSVITYNTL 476

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I  +CK             +  EA  +F  M   G   + V YN LIDG CK+ R+E A 
Sbjct: 477 IDGFCK-----------ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAA 525

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           +L D M  +G  P++ TYNS + ++    +I KA ++++ M + N   P   +Y  +I  
Sbjct: 526 QLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTS-NGCEPDIVTYGTLISG 584

Query: 368 LCEAGRVLEARDFL 381
           LC+AGRV  A   L
Sbjct: 585 LCKAGRVEVASKLL 598



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 111/252 (44%), Gaps = 16/252 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + LK M   G    V T +   LI    +     EA   F  M+      +   YN +I+
Sbjct: 456 NMLKQMELSGCARSVITYNT--LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLID 513

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+      A  L++QM + G +  PD YTY  L++ +C+ G            I +A 
Sbjct: 514 GLCKSRRVEDAAQLMDQMIMEGQK--PDKYTYNSLLTHFCRGG-----------DIKKAA 560

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            + + M   G  PD+V Y  LI G CK  R+E A +L   +  KG       YN  I+  
Sbjct: 561 DIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGL 620

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR-VLEARDFLAELVDGGSVP 391
               +  +AI + R+M   N   P + SY  +   LC  G  + EA DFL EL++ G VP
Sbjct: 621 FRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVP 680

Query: 392 REYTYKLVCDAL 403
              +  ++ + L
Sbjct: 681 EFSSLYMLAEGL 692



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 31/232 (13%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+   Y  ++  L R G+F+  + +LE M+    RC     T+ ILI SY ++ +Q    
Sbjct: 81  PEPALYEEILLRLGRSGSFDDMKKILEDMK--SSRCEMGTSTFLILIESYAQFELQDEIL 138

Query: 262 KAIRRRIWE-----ANHLFRLML--------------------FKGFVPDVVAYNCLIDG 296
             +   I E       H +  ML                      G  PDV  +N LI  
Sbjct: 139 SVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKA 198

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            C+ +++  A+ + +DM   G +P+  T+ + ++ Y    ++D A+ +  +M  +  G  
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQM--VEFGCS 256

Query: 357 TSS-SYTPIIHALCEAGRVLEARDFLAELVD-GGSVPREYTYKLVCDALNAA 406
            S+ S   I+H  C+ GRV +A +F+ E+ +  G  P +YT+  + + L  A
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKA 308



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 121/271 (44%), Gaps = 20/271 (7%)

Query: 136 KEMGIVFARGNNVKGLWDFLKDM--SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF- 192
           +E+ +   R  +   +   L+DM  SR   G    TS+   LI+   +  L +E L+   
Sbjct: 87  EEILLRLGRSGSFDDMKKILEDMKSSRCEMG----TSTFLILIESYAQFELQDEILSVVD 142

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
           + + +F  +PD + YN ++N L    +         +M + G +  PDV T+ +LI + C
Sbjct: 143 WMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIK--PDVSTFNVLIKALC 200

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           +             ++  A  +   M   G VPD   +  ++ G  +   ++ AL + + 
Sbjct: 201 R-----------AHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQ 249

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           M + GC  + V+ N  +  +     ++ A+  +++M N +   P   ++  +++ LC+AG
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            V  A + +  ++  G  P  YTY  V   L
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 139/271 (51%), Gaps = 32/271 (11%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           +++R + ++VT +S+     V+G+   + EA   F+ M      PDVY ++++++ALC+ 
Sbjct: 226 ITKRISPDVVTFNSLILGFCVVGQ---LKEAFGLFHEMVLKNINPDVYTFSILVDALCKD 282

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC--------KYGMQTGCRKAIR---- 265
           GN  +A+ +L  M   G    PDV TY+ L+  YC        K+   T  R  +     
Sbjct: 283 GNITRAKNMLAVMMKQG--VIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAH 340

Query: 266 ------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                       + + EA  LF+ M  KG  PD V YN LIDG CK  RI  A +L D+M
Sbjct: 341 SYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEM 400

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
           +  G   + +TYNS I      + IDKAI +++K++  + G+ P+  +Y  +I  LC+ G
Sbjct: 401 HNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIK--DQGIQPSMYTYNILIDGLCKGG 458

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           R+  A+D   +L+  G     +TY ++ + L
Sbjct: 459 RLKNAQDVFQDLLIKGYSVNAWTYNIMINGL 489



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 110/243 (45%), Gaps = 16/243 (6%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N V         MSR G        S   +I  LG+  +V+EAL+ F  M      PD  
Sbjct: 318 NEVNKAKHVFSTMSRLGVAP--HAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTV 375

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            YN +I+ LC++G  + A  L+++M   G   P D+ TY  LI   CK            
Sbjct: 376 TYNSLIDGLCKLGRISYAWQLVDEMHNNGI--PADILTYNSLIDVLCK-----------N 422

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             I +A  L + +  +G  P +  YN LIDG CK  R++ A ++F D+  KG   N  TY
Sbjct: 423 HHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTY 482

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           N  I         ++A  ++ KM+N N  +P + +Y  II AL       +A   L E++
Sbjct: 483 NIMINGLCKEGLFNEAEVLLSKMEN-NGIIPDAVTYETIIRALFRKDENEKAEKLLREMI 541

Query: 386 DGG 388
             G
Sbjct: 542 IRG 544



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 118/266 (44%), Gaps = 20/266 (7%)

Query: 139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
            IV A  N+          +  +G    + T ++  L+      G +  A + F ++ + 
Sbjct: 66  SIVKANNNHYTTAISLSHQLELKGITPTIVTFNI--LVNCYCHLGEMTFAFSIFAKILKL 123

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
              P    +N +IN +C  G   +A    + +   GF    D  +Y  LI+  CK G   
Sbjct: 124 GYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHL--DQVSYRTLINGLCKIGETR 181

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
              + +++           +  K    DVV YN +I+  CK   +  A +L+ +M  K  
Sbjct: 182 AALQMLKK-----------IEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRI 230

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLE 376
            P+ VT+NS I  + VV ++ +A  +  +M  +N+N   P   +++ ++ ALC+ G +  
Sbjct: 231 SPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNIN---PDVYTFSILVDALCKDGNITR 287

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDA 402
           A++ LA ++  G +P   TY  + D 
Sbjct: 288 AKNMLAVMMKQGVIPDVVTYSSLMDG 313



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 152 WDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           W  + +M   G   +++T +S   LI VL +   +++A+A   ++K    +P +Y YN++
Sbjct: 394 WQLVDEMHNNGIPADILTYNS---LIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNIL 450

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           I+ LC+ G    A+ + + + + G+    + +TY I+I+  CK G+             E
Sbjct: 451 IDGLCKGGRLKNAQDVFQDLLIKGYSV--NAWTYNIMINGLCKEGLFN-----------E 497

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           A  L   M   G +PD V Y  +I    +    E+A +L  +M  +G +
Sbjct: 498 AEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGLL 546



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTY--RIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
           F  ML     P +V +N ++    K        A+ L   +  KG  P  VT+N  +  Y
Sbjct: 45  FHRMLRMRPTPSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCY 104

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             + E+  A  +  K+  L +  PT+ ++  +I+ +C  G++ EA  F   ++  G    
Sbjct: 105 CHLGEMTFAFSIFAKILKLGYH-PTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLD 163

Query: 393 EYTYKLVCDAL 403
           + +Y+ + + L
Sbjct: 164 QVSYRTLINGL 174



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +G  +K   D  +D+  +G    V   +   +I  L +EGL NEA     +M+     
Sbjct: 454 LCKGGRLKNAQDVFQDLLIKGYS--VNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGII 511

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           PD   Y  +I AL R     KA  LL +M + G 
Sbjct: 512 PDAVTYETIIRALFRKDENEKAEKLLREMIIRGL 545


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 117/231 (50%), Gaps = 17/231 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+  L + G V EA   F  M    +C P+V  Y  VIN LC+ G  ++A  LL+ M   
Sbjct: 106 LVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNET 165

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C P+V TY++L+   CK G           R  +   L + M  +GF PDV+ YN L
Sbjct: 166 G--CCPNVITYSVLVEGLCKAG-----------RTDKGFTLLQEMTRRGFQPDVIMYNTL 212

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ++G CK+ R++ ALEL   M + GC P  VTYNS +  +    ++D+A  +++ M     
Sbjct: 213 LNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS--ER 270

Query: 354 GVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           G P    +Y  +I  LC   R+ +A+  L ++V    VP   TY  + D L
Sbjct: 271 GCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGL 321



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 120/237 (50%), Gaps = 20/237 (8%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I  L ++G ++ A+     M +  C P+V  Y+V++  LC+ G  +K   LL++M  
Sbjct: 140 TTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTR 199

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            GF+  PDV  Y  L++  CK            RR+ EA  L +LM+  G  P VV YN 
Sbjct: 200 RGFQ--PDVIMYNTLLNGLCK-----------SRRLDEALELVQLMIRSGCYPTVVTYNS 246

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L++  C++ +++RA  L   M+++GC P+ + YN+ I        +D A  ++++M    
Sbjct: 247 LMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVA-A 305

Query: 353 HGVPTSSSYTPIIHALCEAGRV-----LEAR-DFLAELVDGGSVPREYTYKLVCDAL 403
             VP   +Y+ II  LC+  RV     LEA  + L  +   G  P   TY +V + L
Sbjct: 306 RCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGL 362



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 117/246 (47%), Gaps = 21/246 (8%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           + C + +L   G   +A+  F   ++ RC P+ + Y  +I+ LC+ G  ++A  LL++M 
Sbjct: 1   MNCALNLLVRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G   PP V  +  +I   CK G           R  +A   F+ +      PD++ +N
Sbjct: 58  DRGI--PPGVAVHNGVIKGLCKAG-----------RFGDALGYFKTVAGTKCTPDIITFN 104

Query: 292 CLIDGCCKTYRIERALELFDDMNKKG-CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
            L+D   K+ R+E A ++F+ M+    C+PN VTY + I       ++D+AIE++  M N
Sbjct: 105 ILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLM-N 163

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                P   +Y+ ++  LC+AGR  +    L E+   G  P    Y  +   LN   +  
Sbjct: 164 ETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTL---LNGLCKSR 220

Query: 411 LLDDGL 416
            LD+ L
Sbjct: 221 RLDEAL 226



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 126/270 (46%), Gaps = 23/270 (8%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G   KG +  L++M+RRG    V   +   L+  L +   ++EAL     M +  C P V
Sbjct: 185 GRTDKG-FTLLQEMTRRGFQPDVIMYNT--LLNGLCKSRRLDEALELVQLMIRSGCYPTV 241

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             YN ++   CR    ++A  L++ M   G  CPPDV  Y  +I+  C+           
Sbjct: 242 VTYNSLMELFCRSKQVDRAFRLIQVMSERG--CPPDVINYNTVIAGLCR----------- 288

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI------ERALELFDDMNKKGC 318
             R+ +A  L + M+    VPDV+ Y+ +IDG CK +R+      E A E+ + M + GC
Sbjct: 289 DARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC 348

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            PN  TY   I       +  +A+ ++R+M + +  VP  SS++ +I +LC++  +  A 
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMID-SEVVPDLSSFSMVIGSLCKSHDLDAAY 407

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEE 408
                + +    P    Y  + D L+   E
Sbjct: 408 KIFGMMSERECKPNPVAYAALIDGLSKGGE 437



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 124/263 (47%), Gaps = 25/263 (9%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +F R   V   +  ++ MS RG    V   +   +I  L  +  +++A A   +M   RC
Sbjct: 250 LFCRSKQVDRAFRLIQVMSERGCPPDVINYNT--VIAGLCRDARLDDAQALLKQMVAARC 307

Query: 201 RPDVYAYNVVINALC---RVG---NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
            PDV  Y+ +I+ LC   RV        A  +LE M+  G  CPP+  TY ++I   C+ 
Sbjct: 308 VPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTG--CPPNAGTYAVVIEGLCR- 364

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                      R+  +A  L R M+    VPD+ +++ +I   CK++ ++ A ++F  M+
Sbjct: 365 ----------ARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMS 414

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-QNLNHGVPTSSSYTPIIHALCEAGR 373
           ++ C PN V Y + I   S   E+DKA+ +   M ++   GV T   Y  ++  LC  GR
Sbjct: 415 ERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVAT---YNSVLDGLCGVGR 471

Query: 374 VLEARDFLAELVDGGSVPREYTY 396
           + EA   +  ++     P   +Y
Sbjct: 472 IEEAVRMVEGMIHKECFPDGASY 494



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 15/203 (7%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
            +ALA   RM      PD+ ++++VI +LC+  + + A  +   M      C P+   Y 
Sbjct: 369 QQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSER--ECKPNPVAYA 426

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            LI    K G            + +A  +F LM+ + F P V  YN ++DG C   RIE 
Sbjct: 427 ALIDGLSKGG-----------EVDKAVRVFELMV-ESFRPGVATYNSVLDGLCGVGRIEE 474

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A+ + + M  K C P+  +Y + IR    V+ +++A E+ + ++     +     Y  ++
Sbjct: 475 AVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEV-GVYNVLV 533

Query: 366 HALCEAGRVLEARDFLAELVDGG 388
           + LC+  R+ +A     +L++ G
Sbjct: 534 NELCKKKRLSDAHGVANKLIEAG 556



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + EA+     M    C PD  +Y  +I  LCRV    +A  L + +E  GF    +V 
Sbjct: 470 GRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGF--AMEVG 527

Query: 243 TYTILISSYCK 253
            Y +L++  CK
Sbjct: 528 VYNVLVNELCK 538


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 117/231 (50%), Gaps = 17/231 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+  L + G V EA   F  M    +C P+V  Y  VIN LC+ G  ++A  LL+ M   
Sbjct: 106 LVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNET 165

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C P+V TY++L+   CK G           R  +   L + M  +GF PDV+ YN L
Sbjct: 166 G--CCPNVITYSVLVEGLCKAG-----------RTDKGFTLLQEMTRRGFQPDVIMYNTL 212

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ++G CK+ R++ ALEL   M + GC P  VTYNS +  +    ++D+A  +++ M     
Sbjct: 213 LNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS--ER 270

Query: 354 GVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           G P    +Y  +I  LC   R+ +A+  L ++V    VP   TY  + D L
Sbjct: 271 GCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGL 321



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 120/237 (50%), Gaps = 20/237 (8%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I  L ++G ++ A+     M +  C P+V  Y+V++  LC+ G  +K   LL++M  
Sbjct: 140 TTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTR 199

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            GF+  PDV  Y  L++  CK            RR+ EA  L +LM+  G  P VV YN 
Sbjct: 200 RGFQ--PDVIMYNTLLNGLCK-----------SRRLDEALELVQLMIRSGCYPTVVTYNS 246

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L++  C++ +++RA  L   M+++GC P+ + YN+ I        +D A  ++++M    
Sbjct: 247 LMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVA-A 305

Query: 353 HGVPTSSSYTPIIHALCEAGRV-----LEAR-DFLAELVDGGSVPREYTYKLVCDAL 403
             VP   +Y+ II  LC+  RV     LEA  + L  +   G  P   TY +V + L
Sbjct: 306 RCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGL 362



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 117/246 (47%), Gaps = 21/246 (8%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           + C + +L   G   +A+  F   ++ RC P+ + Y  +I+ LC+ G  ++A  LL++M 
Sbjct: 1   MNCALNLLVRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G   PP V  +  +I   CK G           R  +A   F+ +      PD++ +N
Sbjct: 58  DRGI--PPGVAVHNGVIRGLCKAG-----------RFGDALGYFKTVAGTKCTPDIITFN 104

Query: 292 CLIDGCCKTYRIERALELFDDMNKKG-CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
            L+D   K+ R+E A ++F+ M+    C+PN VTY + I       ++D+AIE++  M N
Sbjct: 105 ILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLM-N 163

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                P   +Y+ ++  LC+AGR  +    L E+   G  P    Y  +   LN   +  
Sbjct: 164 ETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTL---LNGLCKSR 220

Query: 411 LLDDGL 416
            LD+ L
Sbjct: 221 RLDEAL 226



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 124/263 (47%), Gaps = 25/263 (9%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +F R   V   +  ++ MS RG    V   +   +I  L  +  +++A A   +M   RC
Sbjct: 250 LFCRSKQVDRAFRLIQVMSERGCPPDVINYNT--VIAGLCRDARLDDAQALLKQMVAARC 307

Query: 201 RPDVYAYNVVINALC---RVG---NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
            PDV  Y+ +I+ LC   RV        A  +LE M+  G  CPP+  TY ++I   C+ 
Sbjct: 308 VPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTG--CPPNAGTYAVVIEGLCRA 365

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                      R+  +A  L R M+    VPD+ +++ +I   CK++ ++ A ++F  M+
Sbjct: 366 -----------RKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMS 414

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-QNLNHGVPTSSSYTPIIHALCEAGR 373
           ++ C PN V Y + I   S   E+DKA+ +   M ++   GV T   Y  ++  LC  GR
Sbjct: 415 ERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVAT---YNSVLDGLCGVGR 471

Query: 374 VLEARDFLAELVDGGSVPREYTY 396
           + EA   +  ++     P   +Y
Sbjct: 472 IEEAVRMVEGMIHKECFPDGASY 494



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 15/203 (7%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
            +ALA   RM      PD+ ++++VI +LC+  + + A  +   M      C P+   Y 
Sbjct: 369 QQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSER--ECKPNPVAYA 426

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            LI    K G            + +A  +F LM+ + F P V  YN ++DG C   RIE 
Sbjct: 427 ALIDGLSKGG-----------EVDKAVRVFELMV-ESFRPGVATYNSVLDGLCGVGRIEE 474

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A+ + + M  K C P+  +Y + IR    V+ +++A E+ + ++     +     Y  ++
Sbjct: 475 AVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEV-GVYNVLV 533

Query: 366 HALCEAGRVLEARDFLAELVDGG 388
           + LC+  R+ +A     +L++ G
Sbjct: 534 NELCKKKRLSDAHGVANKLIEAG 556



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + EA+     M    C PD  +Y  +I  LCRV    +A  L + +E  GF    +V 
Sbjct: 470 GRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGF--AMEVG 527

Query: 243 TYTILISSYCK 253
            Y +L++  CK
Sbjct: 528 VYNVLVNELCK 538


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 151/333 (45%), Gaps = 42/333 (12%)

Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           R+  K  +G++   +F+ W  R  ++ H+  T   +            +W  +++M R  
Sbjct: 90  REVMKTDVGVSVKMQFFRWAARKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNP 149

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
              +VT   ++ +I++LG   ++++A+A FY++K  +C+P  +AYN +I  L   G + K
Sbjct: 150 VC-VVTPMELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEK 208

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH--------- 273
              L  +M   G +C PD  TY+ LIS++CK G Q          IW  N          
Sbjct: 209 VHELYNEMSNEG-QCFPDTVTYSALISAFCKLGRQDSA-------IWLLNEMKDNGMQPT 260

Query: 274 ----------LFRLMLFKGFV------------PDVVAYNCLIDGCCKTYRIERALELFD 311
                     LF+L    G +            PDV  Y  LI G  K  R++ A   F 
Sbjct: 261 AKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFH 320

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
           +M ++GC P+ V  N+ I +      +D AI++  +M+ L   +P+  +Y  II AL E+
Sbjct: 321 EMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETL-RCIPSVVTYNTIIKALFES 379

Query: 372 -GRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             RV E   +   +   G  P  +TY ++ D  
Sbjct: 380 KSRVSEISSWFERMKGSGISPSPFTYSILIDGF 412



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 138/287 (48%), Gaps = 21/287 (7%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M ++F + +NV G     ++M  +     V T   T LI+ LG+ G ++EA   F+ M++
Sbjct: 268 MALLF-KLDNVHGALGLFEEMRHQYCRPDVFT--YTELIRGLGKAGRLDEAYNFFHEMRR 324

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
             CRPD    N +IN L + G  + A  L E+ME    RC P V TY  +I +  +    
Sbjct: 325 EGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMET--LRCIPSVVTYNTIIKALFES--- 379

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                  + R+ E +  F  M   G  P    Y+ LIDG CKT R E+A+ L ++M++KG
Sbjct: 380 -------KSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKG 432

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P    Y S I         D A E+ ++++  N G  ++  Y  +I  L +AGR+ +A
Sbjct: 433 FPPCPAAYCSLIDALGKAKRYDLANELFQELKE-NCGSSSARVYAVMIKHLGKAGRLDDA 491

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR--KRIRD 422
            D   E+   G  P  Y Y  +   L  A    +LD+ L   +R++D
Sbjct: 492 VDLFDEMNRLGCTPNVYAYNALMSGLARA---GMLDEALTTMRRMQD 535



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 112/259 (43%), Gaps = 28/259 (10%)

Query: 175 LIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           +IK L E +  V+E  + F RMK     P  + Y+++I+  C+     KA  LLE+M+  
Sbjct: 372 IIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEK 431

Query: 234 GFRCPPDVYTYTILISSYCKYG-----------MQTGCRKAIRR-------------RIW 269
           GF  PP    Y  LI +  K             ++  C  +  R             R+ 
Sbjct: 432 GF--PPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLD 489

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A  LF  M   G  P+V AYN L+ G  +   ++ AL     M   GCIP+  +YN  +
Sbjct: 490 DAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIIL 549

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
              +     D+A+ M+  M+  +   P + SY  ++ AL  AG   EA   + E+   G 
Sbjct: 550 NALAKTGGPDRAMGMLCNMKQ-SAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGF 608

Query: 390 VPREYTYKLVCDALNAAEE 408
                TY  + +A+   ++
Sbjct: 609 DYDLITYSSILEAIGKVDQ 627



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 15/147 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D   +M+R G    V   +   L+  L   G+++EAL T  RM+   C PD+ +YN+++N
Sbjct: 493 DLFDEMNRLGCTPNVY--AYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILN 550

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           AL + G  ++A  +L  M+    +  PD  +Y  ++ +    GM             EA 
Sbjct: 551 ALAKTGGPDRAMGMLCNMKQSAIK--PDAVSYNTVLGALSHAGM-----------FEEAA 597

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCK 299
            L + M   GF  D++ Y+ +++   K
Sbjct: 598 KLMKEMNAIGFDYDLITYSSILEAIGK 624


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 115/217 (52%), Gaps = 14/217 (6%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A   F  M +    P+VY YN++I   C  GN     F   +ME  G  C P+V TY  +
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNG--CLPNVVTYNTI 244

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I +YCK            R+I EA  L RLM  KG  P++++YN +I+G C+  +++   
Sbjct: 245 IDAYCKL-----------RKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETS 293

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           E+ ++M+K+  +P+RVT+N+ I  Y  V    +A+ +  +M   N   P   +YT +I++
Sbjct: 294 EILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVK-NGLSPNVVTYTTLINS 352

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           +C+AG +  A +FL ++ D G  P   TY  + D  +
Sbjct: 353 MCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFS 389



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 127/273 (46%), Gaps = 24/273 (8%)

Query: 144 RGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +  N+    +FL  M  RG   NG   TT     LI    ++G + +A      M +   
Sbjct: 355 KAGNLNRAMEFLDQMRDRGLHPNGRTYTT-----LIDGFSQQGFLKQAYQIMKEMVENGF 409

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P +  YN +IN  C +G    A  LL++M   GF   PDV +Y+ +IS +C+       
Sbjct: 410 TPTIITYNALINGHCILGRMEDASGLLQEMIERGF--IPDVVSYSTIISGFCR------- 460

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                + + +A  L   M+ KG  PDV  Y+ LI G CK  R+    +LF +M   G  P
Sbjct: 461 ----NQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPP 516

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
           + VTY S I  Y +  ++DKA+ +  +M  +  G  P   +Y  +I+   +  R  EA+ 
Sbjct: 517 DEVTYTSLINAYCIEGDLDKALRLHDEM--IQKGFSPDIVTYNVLINGFNKQSRTKEAKR 574

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
            L +L+   SVP E TY  + D  N  E  S L
Sbjct: 575 LLLKLLYEESVPNEITYNTLIDNCNNLEFKSAL 607



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 118/255 (46%), Gaps = 17/255 (6%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           GN   GL+ F  +M R  NG L    +   +I    +   + EA      M      P++
Sbjct: 217 GNLEMGLF-FFGEMER--NGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNL 273

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
            +YNVVIN LCR G   +   +LE+M     R  PD  T+  LI+ YC  G         
Sbjct: 274 ISYNVVINGLCREGQMKETSEILEEM--SKRRYVPDRVTFNTLINGYCNVG--------- 322

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
                +A  L   M+  G  P+VV Y  LI+  CK   + RA+E  D M  +G  PN  T
Sbjct: 323 --NFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRT 380

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y + I  +S    + +A ++M++M   N   PT  +Y  +I+  C  GR+ +A   L E+
Sbjct: 381 YTTLIDGFSQQGFLKQAYQIMKEMVE-NGFTPTIITYNALINGHCILGRMEDASGLLQEM 439

Query: 385 VDGGSVPREYTYKLV 399
           ++ G +P   +Y  +
Sbjct: 440 IERGFIPDVVSYSTI 454



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 122/257 (47%), Gaps = 18/257 (7%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           +VK      K+M   G    V T ++  LI+     G +   L  F  M++  C P+V  
Sbjct: 183 SVKIAEGIFKEMVESGVSPNVYTYNI--LIRGFCTAGNLEMGLFFFGEMERNGCLPNVVT 240

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN +I+A C++    +A  LL  M L G    P++ +Y ++I+  C+ G           
Sbjct: 241 YNTIIDAYCKLRKIGEAFKLLRLMALKGLN--PNLISYNVVINGLCREG----------- 287

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++ E + +   M  + +VPD V +N LI+G C      +AL L  +M K G  PN VTY 
Sbjct: 288 QMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYT 347

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           + I        +++A+E + +M+  + G+ P   +YT +I    + G + +A   + E+V
Sbjct: 348 TLINSMCKAGNLNRAMEFLDQMR--DRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMV 405

Query: 386 DGGSVPREYTYKLVCDA 402
           + G  P   TY  + + 
Sbjct: 406 ENGFTPTIITYNALING 422



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 109/256 (42%), Gaps = 33/256 (12%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F R   ++  +    +M  +G    V T S   LI+ L ++  + E    F  M      
Sbjct: 458 FCRNQELEKAFQLKVEMVAKGISPDVATYS--SLIQGLCKQRRLGEVCDLFQEMLSLGLP 515

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   Y  +INA C  G+ +KA  L ++M   GF   PD+ TY +LI+ + K        
Sbjct: 516 PDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGF--SPDIVTYNVLINGFNK-------- 565

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC---------------CKTYRIERA 306
              + R  EA  L   +L++  VP+ + YN LID C               C    +  A
Sbjct: 566 ---QSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEA 622

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPII 365
             + + M +KG   N   YN  I  +S V  I+KA  + ++M  L+ G  P S +   + 
Sbjct: 623 DRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEM--LHSGFAPHSVTIMALA 680

Query: 366 HALCEAGRVLEARDFL 381
            +L   G+ +E    L
Sbjct: 681 KSLYHEGKEVELNQLL 696



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 2/114 (1%)

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           ++ ++  C +   I +AL + +     G +P  ++YN+ +       +  K  E + K +
Sbjct: 135 FDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFK-E 193

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +  GV P   +Y  +I   C AG +     F  E+   G +P   TY  + DA
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDA 247


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 131/260 (50%), Gaps = 21/260 (8%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+    +  V +A+     M+   C PDV  YNV++N +C+ G  ++A   L  M  
Sbjct: 243 TILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM-- 300

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
           P   C P+V T+ I++ S C  G           R  +A  L   ML KGF P VV +N 
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTG-----------RWMDAEKLLADMLRKGFSPSVVTFNI 349

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI+  C+   + RA+++ + M K GC PN ++YN  +  +    ++D+AIE + +M  ++
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM--VS 407

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS- 410
            G  P   +Y  ++ ALC+ G+V +A + L +L   G  P   TY  V D L  A +   
Sbjct: 408 RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGK 467

Query: 411 ---LLDDGLRKRIR-DGIEY 426
              LLD+   K ++ D I Y
Sbjct: 468 AIKLLDEMRAKDLKPDTITY 487



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 142/283 (50%), Gaps = 30/283 (10%)

Query: 150 GLW----DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           G W      L DM R+G    V T ++  LI  L  +GL+  A+    +M +  C+P+  
Sbjct: 323 GRWMDAEKLLADMLRKGFSPSVVTFNI--LINFLCRKGLLGRAIDILEKMPKHGCQPNSL 380

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           +YN +++  C+    ++A   LE+M   G  C PD+ TY  ++++ CK G          
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRG--CYPDIVTYNTMLTALCKDG---------- 428

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            ++ +A  +   +  KG  P ++ YN +IDG  K  +  +A++L D+M  K   P+ +TY
Sbjct: 429 -KVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY 487

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           +S +   S   ++D+AI+   + + +  GV P + ++  I+  LC+  +   A DFL  +
Sbjct: 488 SSLVGGLSREGKVDEAIKFFHEFERM--GVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYM 545

Query: 385 VDGGSVPREYTYKLVCDALN----AAEEPSLLDD----GLRKR 419
           ++ G  P E +Y ++ + L     A E   LL++    GL KR
Sbjct: 546 INRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLMKR 588



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 21/221 (9%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+     +I   CR+G   KA  +LE +E  G    PDV TY ++IS YCK G      
Sbjct: 135 PDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSG--AVPDVITYNVMISGYCKAG------ 186

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                   E N+   ++      PDVV YN ++   C + ++++A+E+ D M ++ C P+
Sbjct: 187 --------EINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPD 238

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            +TY   I      + + +A++++ +M++     P   +Y  +++ +C+ GR+ EA  FL
Sbjct: 239 VITYTILIEATCRDSGVGQAMKLLDEMRD-RGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297

Query: 382 AELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRK 418
            ++   G  P   T+ ++    C      +   LL D LRK
Sbjct: 298 NDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRK 338



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 66/125 (52%), Gaps = 4/125 (3%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M++ G VPD++    LI G C+  +  +A ++ + +   G +P+ +TYN  I  Y    E
Sbjct: 128 MVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGE 187

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           I+ A+ ++ +M       P   +Y  I+ +LC++G++ +A + L  ++     P   TY 
Sbjct: 188 INNALSVLDRMSV----SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYT 243

Query: 398 LVCDA 402
           ++ +A
Sbjct: 244 ILIEA 248


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 125/259 (48%), Gaps = 17/259 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG-EEGLVNEALATFYRMKQFR 199
           +    N +   + F K+M  R  G   T +S+  LIK L   +G V+  L  F  M +  
Sbjct: 130 ILVEENQLNLAFKFYKNM--REIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRG 187

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C PD Y Y  +I+ LCR G  ++A+ L  +M      C P V TYT LI+  C       
Sbjct: 188 CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD--CAPTVVTYTSLINGLCG------ 239

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                 + + EA      M  KG  P+V  Y+ L+DG CK  R  +A+ELF+ M  +GC 
Sbjct: 240 -----SKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCR 294

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN VTY + I       +I +A+E++ +M NL    P +  Y  +I   C   +  EA +
Sbjct: 295 PNMVTYTTLITGLCKEQKIQEAVELLDRM-NLQGLKPDAGLYGKVISGFCAISKFREAAN 353

Query: 380 FLAELVDGGSVPREYTYKL 398
           FL E++ GG  P   T+ +
Sbjct: 354 FLDEMILGGITPNRLTWNI 372



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 115/266 (43%), Gaps = 55/266 (20%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L   G ++EA   F  M +  C P V  Y  +IN LC   N ++A   LE+M+  G
Sbjct: 198 LISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKG 257

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V+TY+ L+   CK G           R  +A  LF +M+ +G  P++V Y  LI
Sbjct: 258 IE--PNVFTYSSLMDGLCKDG-----------RSLQAMELFEMMMARGCRPNMVTYTTLI 304

Query: 295 DGCCKTYRIERALELFDDMNKKG-----------------------------------CI 319
            G CK  +I+ A+EL D MN +G                                     
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGIT 364

Query: 320 PNRVTYNSFIRYYSVV------NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
           PNR+T+N  ++  + V      N   +A  +   M++    V    +   ++  LC+ G 
Sbjct: 365 PNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEV-ETLESLVKCLCKKGE 423

Query: 374 VLEARDFLAELVDGGSVPREYTYKLV 399
             +A   + E+V  G +P + T+KL+
Sbjct: 424 FQKAVQLVDEIVTDGCIPSKGTWKLL 449



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 282 GFVPDVVAYNCLIDGCCKT-YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           G  P V + N LI   C+    ++  L++F +M K+GC P+  TY + I        ID+
Sbjct: 151 GLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDE 210

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A ++  +M       PT  +YT +I+ LC +  V EA  +L E+   G  P  +TY  + 
Sbjct: 211 AKKLFTEMVE-KDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLM 269

Query: 401 DAL 403
           D L
Sbjct: 270 DGL 272



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 34/215 (15%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           NV     +L++M  +G    V T S   L+  L ++G   +A+  F  M    CRP++  
Sbjct: 242 NVDEAMRYLEEMKSKGIEPNVFTYS--SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVT 299

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK------------- 253
           Y  +I  LC+     +A  LL++M L G +  PD   Y  +IS +C              
Sbjct: 300 YTTLITGLCKEQKIQEAVELLDRMNLQGLK--PDAGLYGKVISGFCAISKFREAANFLDE 357

Query: 254 --YGMQTGCRKAIRRRIWEANHLFR---------------LMLFKGFVPDVVAYNCLIDG 296
              G  T  R      +  +N + R                M  +G   +V     L+  
Sbjct: 358 MILGGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKC 417

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
            CK    ++A++L D++   GCIP++ T+   I +
Sbjct: 418 LCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGH 452


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 140/272 (51%), Gaps = 20/272 (7%)

Query: 141 VFARGNNVKGLWDFLK-DMSRRGNGELVTTSSV---TCLIKVLGEEGLVNEALATFYRMK 196
           VFA    V G   +   D +RR  G +         T LI+VL + G V +AL+    M 
Sbjct: 111 VFAYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDML 170

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
           +  C+P+V  Y V++ A+CR   F +A  +L++M   G  C P++ TY ++I+  C+ G 
Sbjct: 171 RRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKG--CTPNIVTYNVIINGMCREG- 227

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                     R+ +A  L   +   GF PD V+Y  L+ G C + R +   ELF +M +K
Sbjct: 228 ----------RVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEK 277

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI-IHALCEAGRVL 375
            C+PN VT++  IR++     +++AI+++ +M    HG  T+++   I I+++C+ GRV 
Sbjct: 278 NCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMT--EHGCATNTTLCNIVINSICKQGRVD 335

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           +A   L ++   G  P   +Y  V   L  AE
Sbjct: 336 DAFKLLNDMGSYGCNPDTISYTTVLKGLCRAE 367



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 19/273 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           NE+T      +  +   ++     ++ MS  G    V T +   L+     +G ++ AL 
Sbjct: 387 NEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNA--LVNGFCVQGHIDSALE 444

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            F  M    C+P+   Y  ++  LC     + A  L+ +M L G  CPP+V T+ +L+S 
Sbjct: 445 LFRSMP---CKPNTITYTTLLTGLCNAERLDGAAELVAEM-LRG-DCPPNVVTFNVLVSF 499

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           +C+ G            + EA  L   M+  G  P+++ YN L+DG  K    E ALEL 
Sbjct: 500 FCQKGF-----------LEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELL 548

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
             +  KG  P+ +T++S I   S  + I++A+++   +Q++    P +  Y  I+  LC+
Sbjct: 549 HGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMR-PKAVVYNKILLGLCK 607

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              +  A DF A +V  G +P E TY ++ + L
Sbjct: 608 RCEIDNAIDFFAYMVSNGCMPNESTYIILIEGL 640



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 130/295 (44%), Gaps = 25/295 (8%)

Query: 115 ATEFYHWVERFF------DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVT 168
           A++ +  VE  F      +   NE+T   +   F RG  V+     L+ M+  G     T
Sbjct: 260 ASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTT 319

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
             ++  +I  + ++G V++A      M  + C PD  +Y  V+  LCR   ++ A+ LL 
Sbjct: 320 LCNI--VINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLN 377

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M      CPP+  T+   I   C+ G+           I +A  L   M   G    VV
Sbjct: 378 EMVRN--NCPPNEVTFNTFICILCQKGL-----------IEQAIMLIEQMSEHGCTVGVV 424

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN L++G C    I+ ALELF  M    C PN +TY + +        +D A E++ +M
Sbjct: 425 TYNALVNGFCVQGHIDSALELFRSMP---CKPNTITYTTLLTGLCNAERLDGAAELVAEM 481

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                  P   ++  ++   C+ G + EA + + ++++ G  P   TY  + D +
Sbjct: 482 LR-GDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGI 535



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 136/344 (39%), Gaps = 98/344 (28%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           V      L DM RRG    V T +V  L++ +       +A+A    M+   C P++  Y
Sbjct: 159 VADALSLLDDMLRRGCQPNVVTYTV--LLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTY 216

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFR------------------------------- 236
           NV+IN +CR G  + AR LL ++   GF+                               
Sbjct: 217 NVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMME 276

Query: 237 --CPPDVYTYTILISSYCKYGM------------QTGCRKAI------------RRRIWE 270
             C P+  T+ +LI  +C+ GM            + GC                + R+ +
Sbjct: 277 KNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDD 336

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI- 329
           A  L   M   G  PD ++Y  ++ G C+  R + A EL ++M +  C PN VT+N+FI 
Sbjct: 337 AFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFIC 396

Query: 330 ----------------------------RYYSVVN------EIDKAIEMMRKMQNLNHGV 355
                                        Y ++VN       ID A+E+ R M       
Sbjct: 397 ILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP----CK 452

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           P + +YT ++  LC A R+  A + +AE++ G   P   T+ ++
Sbjct: 453 PNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVL 496



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 93/206 (45%), Gaps = 17/206 (8%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDVY    +I  LCR G  + A  +L   E  G   P DV+ Y  L++ YC+YG     R
Sbjct: 74  PDVYLCTKLIRNLCRRGRTSDAARVLRAAE--GSGSPVDVFAYNTLVAGYCRYGHLDAAR 131

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                         RL+      PD   Y  LI   C   R+  AL L DDM ++GC PN
Sbjct: 132 --------------RLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPN 177

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VTY   +      +  ++A+ ++ +M+      P   +Y  II+ +C  GRV +AR+ L
Sbjct: 178 VVTYTVLLEAMCRNSGFEQAMAVLDEMR-AKGCTPNIVTYNVIINGMCREGRVDDARELL 236

Query: 382 AELVDGGSVPREYTYKLVCDALNAAE 407
             L   G  P   +Y  +   L A++
Sbjct: 237 NRLPSYGFQPDTVSYTTLLKGLCASK 262


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 132/253 (52%), Gaps = 23/253 (9%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            L +++RRG   ++VT S+V   I  L + G + +A+  F  M    C P    YN +I 
Sbjct: 242 LLGEVTRRGFTPDIVTYSTV---IDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIG 295

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             CR G+ ++A  LL +M      C PDV TYT L+S++CK G           R+ +A 
Sbjct: 296 GYCRAGDMDEAIRLLGKM--VDDNCAPDVITYTTLMSAFCKMG-----------RLDDAY 342

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            LF+ M+     PDVV +  L+DG C   R+E ALEL +++ ++GC P   TYN  +  Y
Sbjct: 343 ELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGY 402

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL-VDGGSVP 391
              N++ KA E++   ++    VP + +Y  ++   C AGR  +A  +L +L  +GG  P
Sbjct: 403 CKSNQVRKAEELVADFRSRGF-VPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCP 461

Query: 392 REYT-YKLVCDAL 403
                Y ++ DAL
Sbjct: 462 TSVAMYAIILDAL 474



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 141/306 (46%), Gaps = 36/306 (11%)

Query: 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSR--RGNGELVT 168
           GL KA      V+ F      EM+C    I +   N++ G +    DM    R  G++V 
Sbjct: 264 GLCKAGRLRDAVDIF-----EEMSCAPTAITY---NSLIGGYCRAGDMDEAIRLLGKMVD 315

Query: 169 TS------SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
            +      + T L+    + G +++A   F +M   +  PDV  +  +++ LC  G    
Sbjct: 316 DNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMED 375

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  LLE++   G  CPP +YTY  ++  YCK             ++ +A  L      +G
Sbjct: 376 ALELLEEITRRG--CPPTIYTYNCVVDGYCK-----------SNQVRKAEELVADFRSRG 422

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDK 340
           FVP+ V YN L+ GCC+  R ++AL+  D +N +G  C  +   Y   +         D 
Sbjct: 423 FVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDD 482

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A++   +M    + VP ++++  ++ ALC+A +  +A + L E++  G  P   T    C
Sbjct: 483 AVQFYEEMIQRGY-VPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGT----C 537

Query: 401 DALNAA 406
           DA+ +A
Sbjct: 538 DAVVSA 543



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 18/232 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+  L + G + +A+     M   R  PD     VV+ +LC     + AR L+E+M  
Sbjct: 153 TKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLH 212

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA-NHLFRLMLFKGFVPDVVAYN 291
            G     +  TY+ L+   CK             R+ EA   L   +  +GF PD+V Y+
Sbjct: 213 RGM--AANAITYSALVDGLCKC-----------ERLDEAVALLLGEVTRRGFTPDIVTYS 259

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +IDG CK  R+  A+++F++M+   C P  +TYNS I  Y    ++D+AI ++ KM + 
Sbjct: 260 TVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVD- 315

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++  P   +YT ++ A C+ GR+ +A +   ++V     P   T+  + D L
Sbjct: 316 DNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGL 367



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 96/222 (43%), Gaps = 17/222 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L +  L++EA+     MK     P    +NVVI  LCR G    A  +  QM    
Sbjct: 86  LIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH 145

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
              PPD  TYT L+    K G           R+ +A  + + M+    VPD      ++
Sbjct: 146 ---PPDFLTYTKLVHGLSKAG-----------RLRDAVQVLQEMVSARHVPDNTTLTVVV 191

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              C   R++ A EL ++M  +G   N +TY++ +        +D+A+ ++         
Sbjct: 192 QSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGF 251

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            P   +Y+ +I  LC+AGR+ +A D   E+      P   TY
Sbjct: 252 TPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITY 290



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 17/200 (8%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA--LATFYRMKQFRCRPDVYAYNV 209
            + L++++RRG    + T +  C++    +   V +A  L   +R + F   P+   YN+
Sbjct: 377 LELLEEITRRGCPPTIYTYN--CVVDGYCKSNQVRKAEELVADFRSRGFV--PNTVTYNI 432

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           ++   CR G  ++A   L+Q+   G  CP  V  Y I++ + C+ G           R  
Sbjct: 433 LVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDG-----------RTD 481

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A   +  M+ +G+VP    +  ++   CK ++ ++A EL ++M K G  P   T ++ +
Sbjct: 482 DAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVV 541

Query: 330 RYYSVVNEIDKAIEMMRKMQ 349
             Y     I KA E+  +++
Sbjct: 542 SAYCRAGMIQKADELASELR 561



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 16/206 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD    N ++  LC   +   A  L ++M   G     +  TY  LI   CK        
Sbjct: 44  PDPVELNTILAELCDARDTTTAMALFDKMAELG---AVNHTTYYNLIHPLCK-------- 92

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               R + EA  L   M  +G  P  + +N +I G C+  R+  AL ++  MN     P+
Sbjct: 93  ---ARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPD 148

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            +TY   +   S    +  A++++++M +  H VP +++ T ++ +LC   RV +AR+ +
Sbjct: 149 FLTYTKLVHGLSKAGRLRDAVQVLQEMVSARH-VPDNTTLTVVVQSLCLGDRVDDARELV 207

Query: 382 AELVDGGSVPREYTYKLVCDALNAAE 407
            E++  G      TY  + D L   E
Sbjct: 208 EEMLHRGMAANAITYSALVDGLCKCE 233



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 38/168 (22%)

Query: 273 HLFRLMLF----KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
           HL  L+L     +G  PD V  N ++   C       A+ LFD M + G + N  TY + 
Sbjct: 28  HLGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELGAV-NHTTYYNL 86

Query: 329 IRYYSVVNEIDKAIEMMRKMQN----------------------LNHGV----------- 355
           I        +D+A+ ++  M++                      L H +           
Sbjct: 87  IHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHP 146

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           P   +YT ++H L +AGR+ +A   L E+V    VP   T  +V  +L
Sbjct: 147 PDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSL 194


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 173/404 (42%), Gaps = 60/404 (14%)

Query: 54  SIPRFFFQSPRSIGRQT------GFRHRTPLRQRILKKEAYNI------ANNVLVLGPAA 101
           S PRF FQ     G           RHR      +LK E            NVL+ G   
Sbjct: 49  SSPRFGFQHSVHTGNALLDVFARTKRHREA--GNLLKNELATTFLPDVETWNVLITGYCL 106

Query: 102 YRDPQKVTLGLNKATEFYHWVERFFDFFHN---EMTCKEMGIVFARGNNVKGLWDFLKDM 158
            R+P++    + +  E Y          HN      CK  G V A  ++ +         
Sbjct: 107 AREPEEAFAVIREMEEDYGVAPSLKT--HNLVLHGLCKS-GKVLAAMDHFE--------- 154

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           +   NG  +   + T ++  L +   + +A+A   ++    C P +  YN ++N LC++G
Sbjct: 155 TTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMG 214

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------------MQTGC 260
              +A  LL ++   G  C PDV TYT LI    K                    + T C
Sbjct: 215 RLEEAIDLLRKIVDNG--CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVC 272

Query: 261 RKAIRR------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
             A+ R      +I +A+ +++ M  +G VPDVV  + +IDG CK  RI  A+ +F  M 
Sbjct: 273 YTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSME 332

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
            +G  PN V Y++ I       ++D A+EM+ +M+      P + +Y  +I  LC++G V
Sbjct: 333 ARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKK-AFCTPDTITYNILIDGLCKSGDV 391

Query: 375 LEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDD 414
             AR F  E+++ G  P  YTY ++    C A N      + DD
Sbjct: 392 EAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDD 435



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 122/305 (40%), Gaps = 53/305 (17%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +   K+M+ RG   ++ T   T LI+ L + G + +A + +  M    C PDV   + +I
Sbjct: 255 YKLFKEMALRG--LVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMI 312

Query: 212 NALCRVGNFNKARFLLEQMELPGFR---------------------------------CP 238
           + LC+ G    A  + + ME  G                                   C 
Sbjct: 313 DGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCT 372

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD  TY ILI   CK G            +  A   F  ML  G  PDV  YN L+ G C
Sbjct: 373 PDTITYNILIDGLCKSG-----------DVEAARAFFDEMLEAGCKPDVYTYNILVSGFC 421

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K    + A  +FDDM+   C PN VTY + I       ++ KA    + M+    G P  
Sbjct: 422 KAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMK--ERGCPPD 479

Query: 359 S-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV---CDALNAAEEPSLLDD 414
           S  Y+ ++  LC++G++        E+   G    +   +L+   C A N  +E   L +
Sbjct: 480 SFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLCKA-NRVDEAVSLFN 538

Query: 415 GLRKR 419
            +RK 
Sbjct: 539 AIRKE 543


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 149/326 (45%), Gaps = 28/326 (8%)

Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           R+  K  +G+N   +F+ W  +  ++ H+  T   +            +W  +++M R  
Sbjct: 94  REVMKTDIGVNVKMQFFRWAAKRRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNP 153

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
              +VT + ++ ++++LG   +V++A+A FY++K  +C+P   AYN +I  L   G + K
Sbjct: 154 IC-VVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGK 212

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR--------------- 267
              L  +M   G  C PD  TY+ LIS++CK G +    + +                  
Sbjct: 213 VHELYNEMSTEG-HCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTML 271

Query: 268 ---------IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                    +  A  LF  M  +   PDV  Y  LI G  K  RI+ A   F +M ++GC
Sbjct: 272 ITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGC 331

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLEA 377
            P+ V  N+ I +      +D A+++ ++M  L   +P+  +Y  II AL E+  R  E 
Sbjct: 332 RPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTL-RCIPSVVTYNTIIKALFESKSRASEV 390

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
             +   + + G  P  +TY ++ D  
Sbjct: 391 PSWFERMKESGISPSSFTYSILIDGF 416



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 116/246 (47%), Gaps = 16/246 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI+ LG+ G ++EA   FY M++  CRPD    N +IN L + G  + A  L ++M
Sbjct: 302 TYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEM 361

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                RC P V TY  +I +  +           + R  E    F  M   G  P    Y
Sbjct: 362 --GTLRCIPSVVTYNTIIKALFES----------KSRASEVPSWFERMKESGISPSSFTY 409

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + LIDG CKT R+E+A+ L ++M++KG  P    Y S I         D A E+ ++++ 
Sbjct: 410 SILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 469

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
            N G  ++  Y  +I  L +AGR+ +A +   E+   G  P  Y Y  +   L       
Sbjct: 470 -NCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL---ARTG 525

Query: 411 LLDDGL 416
           +LD+ L
Sbjct: 526 MLDEAL 531



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 113/258 (43%), Gaps = 28/258 (10%)

Query: 175 LIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           +IK L E +   +E  + F RMK+    P  + Y+++I+  C+     KA  LLE+M+  
Sbjct: 376 IIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEK 435

Query: 234 GFRCPPDVYTYTILISSYCKYG-----------MQTGCRKAIRR-------------RIW 269
           GF  PP    Y  LI +  K             ++  C  +  R             R+ 
Sbjct: 436 GF--PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLD 493

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A ++F  M   G  PDV AYN L+ G  +T  ++ AL     M + GCIP+  +YN  +
Sbjct: 494 DAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIIL 553

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
              +      +A+EM+  M+  +   P   SY  ++ AL  AG   EA   + E+   G 
Sbjct: 554 NGLAKTGGPHRAMEMLSNMKQ-STVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGF 612

Query: 390 VPREYTYKLVCDALNAAE 407
                TY  + +A+   +
Sbjct: 613 EYDLITYSSILEAIGKVD 630



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G +   +S   ++  L + G  + A+     MKQ   RPDV +YN V+ AL   G F +
Sbjct: 540 HGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEE 599

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           A  L+E+M   GF    D+ TY+ ++ +  K
Sbjct: 600 AAKLMEEMNTLGFEY--DLITYSSILEAIGK 628


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 117/229 (51%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            I  +  EG    A+  +  MK   C+PD + YN++I++LC  G   +A  LL +ME+ G
Sbjct: 285 FIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISG 344

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  +V TY  LI  +CK            ++I EA  +F  M  +G   + V YN LI
Sbjct: 345 --CARNVITYNTLIDGFCK-----------NKKIEEAEEIFDQMEIQGLSRNSVTYNTLI 391

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+ R++ A +L D M  +G  P++ TYNS + Y+    +I KA ++++ M + N  
Sbjct: 392 DGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTS-NGC 450

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P   +Y  +I  LC+AGRV  A   L  +   G V   + Y  V  AL
Sbjct: 451 EPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQAL 499



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 133/324 (41%), Gaps = 69/324 (21%)

Query: 126 FDFFHNEMTCKEMGIVFARGNNVKGLWDF----LKDMSRRGNGELVTTSSVTCLIKVLGE 181
           F FFH  ++   +     + +      +F    L D  RR N E       T  +++L  
Sbjct: 24  FSFFHKPISNSTLSFASTQQHTATLSSNFTPAQLLDTLRRQNDE-------TAALRLLS- 75

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
                      +  KQ   RP+   Y  ++  L +VG+FN  + +L++M+  G  C  D 
Sbjct: 76  -----------WASKQPNFRPNSSIYEEILRKLGKVGSFNSMKDILQEMK--GLDCQIDR 122

Query: 242 YTYTILISSYCKY-------------------GMQTGCRKAIRRRIWEANHL------FR 276
               I I SY K+                    + T     +   + + N L        
Sbjct: 123 GVLLIFIDSYAKFELYEEILCIVEVMEVEFGLALDTLLYNFLLNVLVDGNKLKLVENVHS 182

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M+ KG  PDV  +N LI   CK ++I  A+ + ++M+  G +P+  T+ + ++ +    
Sbjct: 183 TMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEG 242

Query: 337 EIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGS------ 389
            +D A  +  K Q L+ G P T+ +   ++H  C+ GR+ EA  F+ E+ + G       
Sbjct: 243 NMDGAFRV--KEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIE 300

Query: 390 ----------VPREYTYKLVCDAL 403
                      P E+TY ++ D+L
Sbjct: 301 LYNEMKNKGCQPDEFTYNMLIDSL 324



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 86/232 (37%), Gaps = 68/232 (29%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
           F +   ++   +    M  +G    ++ +SVT   LI  L +   V EA     +M    
Sbjct: 359 FCKNKKIEEAEEIFDQMEIQG----LSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEG 414

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQT 258
            +PD + YN ++   CR G+  KA  +++ M   G  C PD+ TY  LI   CK G ++ 
Sbjct: 415 LKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNG--CEPDIVTYGTLIGGLCKAGRVEV 472

Query: 259 GCR---------------------KAI--RRRIWEANHLFRLM----------------- 278
             R                     +A+  R+R  EA  LFR M                 
Sbjct: 473 ASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFR 532

Query: 279 -------------------LFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
                              + KGF+P+  ++  L +G C     +  ++L D
Sbjct: 533 GLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLCSLSMEDTLIKLVD 584


>gi|356517946|ref|XP_003527646.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 511

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 122/235 (51%), Gaps = 13/235 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
            T +V  LI+ L   G ++EA      ++ F C PDV  YN +I+ LC +   ++AR LL
Sbjct: 176 VTYTVNILIRGLCRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLL 235

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            ++ L G    PDV +YT++IS YCK            R++ E + LF  M+  G  P+ 
Sbjct: 236 REVCLNG-EFAPDVVSYTMIISGYCKL-----------RKMEEGSLLFDEMINSGTAPNT 283

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             +N LIDG  K   +  AL L+  M  +GC+P+  T+ S I  +  V ++ +A++M  K
Sbjct: 284 FTFNALIDGFGKLGDMASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQAMDMWHK 343

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           M   N G  +  +Y+ ++  LC   R+ +ARD L  L +   VP+ + Y  V D 
Sbjct: 344 MNEKNIG-ASLYTYSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDG 397



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 26/221 (11%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI- 264
            Y++++ +LCR    + A+ + + M   G    PD      L+SSY   G     R+ + 
Sbjct: 74  TYSLLLRSLCRSNLHHTAKVVYDWMRCDGQ--IPDNRLLGFLVSSYAIVGRLDVSRELLA 131

Query: 265 -----------------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
                                  + ++ +A  LFR ++   + P     N LI G C+  
Sbjct: 132 DVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILIRGLCRVG 191

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
            I+ A +L  D+   GC+P+ +TYN+ I    ++NE+D+A  ++R++       P   SY
Sbjct: 192 EIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLLREVCLNGEFAPDVVSY 251

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           T II   C+  ++ E      E+++ G+ P  +T+  + D 
Sbjct: 252 TMIISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALIDG 292



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 105/237 (44%), Gaps = 17/237 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G    T +   LI   G+ G +  ALA + +M    C PDV  +  +IN   RV   ++
Sbjct: 277 SGTAPNTFTFNALIDGFGKLGDMASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQ 336

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  +  +M          +YTY++L+S  C              R+ +A  + RL+    
Sbjct: 337 AMDMWHKMNEKNI--GASLYTYSVLVSGLCN-----------NNRLHKARDILRLLNESD 383

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
            VP    YN +IDG CK+  ++ A ++  +M    C P+++T+   I  + +   + +AI
Sbjct: 384 IVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAI 443

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA---RDFLAELVDGGSVPREYTY 396
               KM  +    P   +   +   L +AG   EA   ++ LA+ +  G+   + +Y
Sbjct: 444 GFFDKMLAVGCA-PDEITVNNLRSCLLKAGMPGEAARVKEVLAQNLTLGTTSSKKSY 499



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 12/161 (7%)

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY++L+ S C+  +              A  ++  M   G +PD      L+       R
Sbjct: 74  TYSLLLRSLCRSNLH-----------HTAKVVYDWMRCDGQIPDNRLLGFLVSSYAIVGR 122

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           ++ + EL  D+       N V YN         N++  A+ + R++  L +  P + +  
Sbjct: 123 LDVSRELLADVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYK-PVTYTVN 181

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +I  LC  G + EA   L +L   G +P   TY  +   L
Sbjct: 182 ILIRGLCRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGL 222


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 144/286 (50%), Gaps = 22/286 (7%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           ++VT SS+   +  L + G V++A+    R+K + C+PD  AY  V+  LC +  +  A 
Sbjct: 336 DIVTYSSI---LDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAE 392

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            L+ +M      CPPD  T+  +I+S C+ G+     K + +           M   G  
Sbjct: 393 ELMAEMVCSD--CPPDEVTFNTVIASLCQKGLVDRAIKVVEQ-----------MSENGCN 439

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           PD+V YN +IDG C    I+ A+EL  ++   GC P+ VT+N+ ++    V+  + A ++
Sbjct: 440 PDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQL 499

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           M  M + +   P ++++  +I +LC+ G +L+A + L  + + G +P + TY +V DAL 
Sbjct: 500 MVNMMH-SDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALL 558

Query: 405 AA---EEPSLLDDGLRKRIRDGIEYR--FRQVMKVKPIMKHKELLK 445
            A   +E   L  G+     D I Y      + K   + +  +LL+
Sbjct: 559 KAGKTQEALKLLSGMTNGTPDLITYNTVISNITKAGKMEEALDLLR 604



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 123/248 (49%), Gaps = 18/248 (7%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           DM  RG    V T S+  L+    +     +A+     M+   C PD+  YNV+INA+C 
Sbjct: 187 DMLHRGCSPSVVTYSI--LLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCN 244

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
            G+ ++A  +L   +LP   C PD  TYT ++ S C              R  E   LF 
Sbjct: 245 EGDVDEALNILS--DLPSHGCKPDAVTYTPVLKSLCG-----------SERWKEVEELFA 291

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M      PD V +N ++   C+   ++RA+++ D M++ GCIP+ VTY+S +     V 
Sbjct: 292 EMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVG 351

Query: 337 EIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
            +D A+E++ +++  ++G  P + +YT ++  LC   +   A + +AE+V     P E T
Sbjct: 352 RVDDAVELLSRLK--SYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVT 409

Query: 396 YKLVCDAL 403
           +  V  +L
Sbjct: 410 FNTVIASL 417



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 118/248 (47%), Gaps = 24/248 (9%)

Query: 159 SRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           S  G+G+ +    V C  LIK L   G V +A   F  +        V  YN ++N  CR
Sbjct: 86  SGGGSGKCLPLPVVPCNILIKRLCSGGRVADAERVFATLGA---SATVVTYNTMVNGYCR 142

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
            G    AR L+  M  P     PD +T+  LI + C           +R R+ +A  +F 
Sbjct: 143 AGRIEDARRLISGMPFP-----PDTFTFNPLIRALC-----------VRGRVPDALAVFD 186

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            ML +G  P VV Y+ L+D  CK     +A+ L D+M  KGC P+ VTYN  I       
Sbjct: 187 DMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEG 246

Query: 337 EIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
           ++D+A+ ++  +   +HG  P + +YTP++ +LC + R  E  +  AE+      P E T
Sbjct: 247 DVDEALNILSDLP--SHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVT 304

Query: 396 YKLVCDAL 403
           +  +  +L
Sbjct: 305 FNTIVTSL 312



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 115/235 (48%), Gaps = 16/235 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+ L   G V +ALA F  M    C P V  Y+++++A C+   + +A  LL++M   G
Sbjct: 168 LIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKG 227

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD+ TY +LI++ C  G            + EA ++   +   G  PD V Y  ++
Sbjct: 228 --CEPDIVTYNVLINAMCNEG-----------DVDEALNILSDLPSHGCKPDAVTYTPVL 274

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              C + R +   ELF +M    C P+ VT+N+ +        +D+AI+++  M    HG
Sbjct: 275 KSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSE--HG 332

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            +P   +Y+ I+  LC+ GRV +A + L+ L   G  P    Y  V   L + E+
Sbjct: 333 CIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQ 387



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 18/224 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L ++GLV+ A+    +M +  C PD+  YN +I+ LC     + A  LL  ++   
Sbjct: 413 VIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQ--S 470

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE-ANHLFRLMLFKGFVPDVVAYNCL 293
           + C PD+ T+  L+   C          ++ R  WE A  L   M+     PD   +N +
Sbjct: 471 YGCKPDIVTFNTLLKGLC----------SVDR--WEDAEQLMVNMMHSDCPPDATTFNTV 518

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I   C+   + +A+E    M + GCIPN+ TYN  +       +  +A++++  M N   
Sbjct: 519 ITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTN--- 575

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           G P   +Y  +I  + +AG++ EA D L  +V  G  P   TY+
Sbjct: 576 GTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYR 619



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 50/212 (23%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L ++GL+ +A+ T   M +  C P+   YN+V++AL + G   +A  LL  M    
Sbjct: 518 VITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMT--- 574

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY---- 290
               PD+ TY  +IS+  K G           ++ EA  L R+M+  G  PD + Y    
Sbjct: 575 -NGTPDLITYNTVISNITKAG-----------KMEEALDLLRVMVSNGLSPDTITYRSLA 622

Query: 291 -------------------------------NCLIDGCCKTYRIERALELFDDMNKKGCI 319
                                          N ++ G C+ +R + A++ F  M   GC+
Sbjct: 623 YGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCM 682

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
           P+  TY   +   +    +D+A +++  + +L
Sbjct: 683 PDESTYIILLEALAYECLLDEAKQLLVNLCSL 714


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 143/314 (45%), Gaps = 41/314 (13%)

Query: 136 KEMGIV------------FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183
           KEMG V            +++  +    + FL +M +  N  L T  + T ++  L + G
Sbjct: 37  KEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVK--NHCLPTVVTYTNIVDGLCKAG 94

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
              +A+     M+   C P++Y YNV++  LC     ++A+ +LE+M + G+   PDV T
Sbjct: 95  RTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF--PDVVT 152

Query: 244 YTILISSYCKYGMQTGCRKAIRR---------------------RIWEANHLFRLMLFKG 282
           Y   I   CK       RK + R                      +  A+ +   M  +G
Sbjct: 153 YNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRG 212

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PDVV Y+ LIDG CK   +ERA+ L D M K GC PN V YNS +     +  I KA 
Sbjct: 213 CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAE 272

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +M+ +M+      P   SY   I  LC+A RV +A+     +V+ G  P   +Y ++ + 
Sbjct: 273 DMLVEMERRGF-TPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEE 331

Query: 403 LNAAEEPSLLDDGL 416
           L   +E   LDD +
Sbjct: 332 LCKKKE---LDDAI 342



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 131/258 (50%), Gaps = 34/258 (13%)

Query: 154 FLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            L++M+ RG   ++VT +S    IK L +   V+EA     RM      PDV +Y  VIN
Sbjct: 137 MLEEMAVRGYFPDVVTYNS---FIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVIN 190

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGC 260
            LC+ G+ + A  +L+QM   G  C PDV TY+ LI  +CK G            ++ GC
Sbjct: 191 GLCKSGDLDSASRMLDQMTNRG--CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGC 248

Query: 261 R----------KAIRR--RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
           R           A+ R   I +A  +   M  +GF PDVV+YN  IDG CK  R+++A  
Sbjct: 249 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKA 308

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           +FD M ++GC PN  +Y+  +       E+D AI ++ + +   + +     YT ++  L
Sbjct: 309 VFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQARE-KYQIVDILLYTVLLDGL 367

Query: 369 CEAGRVLEARDFLAELVD 386
           C+ GR  EA    ++++D
Sbjct: 368 CKGGRFDEACALFSKVLD 385



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 23/252 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELP 233
           L++ L     + +A     RMK+  C PD   YN +I+   +  +F +A +FL E ++  
Sbjct: 16  LLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVK-- 73

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
              C P V TYT ++   CK G           R  +A  L   M  KG  P++  YN +
Sbjct: 74  -NHCLPTVVTYTNIVDGLCKAG-----------RTKDAVKLLDEMRDKGCSPNIYTYNVI 121

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ++G C+  +++ A ++ ++M  +G  P+ VTYNSFI+     + +D+A + + +M     
Sbjct: 122 VEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPV--- 178

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP---- 409
             P   SYT +I+ LC++G +  A   L ++ + G  P   TY  + D      E     
Sbjct: 179 -TPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAM 237

Query: 410 SLLDDGLRKRIR 421
            LLD  L+   R
Sbjct: 238 GLLDSMLKLGCR 249



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 14/185 (7%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C+PD + + +++  LCR     KAR LL +M+  G  C PD   Y  LIS Y K      
Sbjct: 6   CQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMG--CVPDDAIYNALISGYSK------ 57

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                 +   +A      M+    +P VV Y  ++DG CK  R + A++L D+M  KGC 
Sbjct: 58  -----AKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCS 112

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN  TYN  +       ++D+A +M+ +M    +  P   +Y   I  LC+  RV EAR 
Sbjct: 113 PNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGY-FPDVVTYNSFIKGLCKCDRVDEARK 171

Query: 380 FLAEL 384
           FLA +
Sbjct: 172 FLARM 176



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 134/332 (40%), Gaps = 89/332 (26%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            L  M+ RG   ++VT SS   LI    + G V  A+     M +  CRP++ AYN ++ 
Sbjct: 204 MLDQMTNRGCTPDVVTYSS---LIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLG 260

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           AL R+G+  KA  +L +ME  GF   PDV +Y   I   CK             R+ +A 
Sbjct: 261 ALHRLGHIGKAEDMLVEMERRGF--TPDVVSYNACIDGLCK-----------AERVKKAK 307

Query: 273 HLFRLMLFKGFVP-----------------------------------DVVAYNCLIDGC 297
            +F  M+ +G  P                                   D++ Y  L+DG 
Sbjct: 308 AVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGL 367

Query: 298 CKTYRIERALELFDD-MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN---- 352
           CK  R + A  LF   +++K C P+   YN  +  +    +IDKA+++ ++M   N    
Sbjct: 368 CKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNV 427

Query: 353 -------HG----------------------VPTSSSYTPIIHALCEAGRVLEARDFLAE 383
                  HG                      +P   +Y  ++ A+C+ G+   A +   E
Sbjct: 428 VTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEE 487

Query: 384 LVDGGSVPREYTYKLVCDAL---NAAEEPSLL 412
            V GG VP   TY  +   L   N AEE  LL
Sbjct: 488 AVKGGCVPDVVTYSALITGLVHENMAEEAYLL 519



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 6/173 (3%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+ K   PD   +  L+ G C++ ++E+A +L   M + GC+P+   YN+ I  YS   +
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
             +A + + +M   NH +PT  +YT I+  LC+AGR  +A   L E+ D G  P  YTY 
Sbjct: 61  FGQAFKFLAEMVK-NHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYN 119

Query: 398 LVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLKCGEID 450
           ++ + L    E   LD+  +      +   F  V+     +K   L KC  +D
Sbjct: 120 VIVEGLC---EERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKG--LCKCDRVD 167



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 21/217 (9%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL    +M +  C  +V  +N++++ LC     + A  +L  M   GF   PD  TY
Sbjct: 409 IDKALQIHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGF--IPDFVTY 465

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L+ + CK G               A  LF   +  G VPDVV Y+ LI G       E
Sbjct: 466 GTLVDAMCKCGKSAA-----------ALELFEEAVKGGCVPDVVTYSALITGLVHENMAE 514

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  LF  +       +   +N+ I  Y+     D  +++  ++   +      +    I
Sbjct: 515 EAYLLFTKL-------DVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEI 567

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
              L +A  + +AR      V GG  P  +    + D
Sbjct: 568 SGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLID 604


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 145/326 (44%), Gaps = 28/326 (8%)

Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           R+  K  +G+N   +F+ W  +  ++ H+  T   +            +W  +++M R  
Sbjct: 94  REVMKTDVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSP 153

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
              +VT   ++ +I++LG   ++ +A+  FY++K  +C+P   AYN +I  L   G + K
Sbjct: 154 IC-VVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEK 212

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR---------------- 266
              L  +M   G  C PD  TY+ LIS++CK G Q    + +                  
Sbjct: 213 VHELYNEMSNEG-HCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMI 271

Query: 267 --------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                    +  A  LF  M +    PDV  Y  LI G  K  RI+ A   + +M ++GC
Sbjct: 272 ISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGC 331

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLEA 377
            P+ V  N+ I +      +D  +++  +M  ++H +P   +Y  II AL E+  RV E 
Sbjct: 332 KPDTVVMNNMINFLGKAGRLDDGLKLFEEM-GVSHCIPNVVTYNTIIKALFESKSRVSEV 390

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
             +   +   G  P  +TY ++ D  
Sbjct: 391 FSWFERMKGSGISPSPFTYSILIDGF 416



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 129/276 (46%), Gaps = 18/276 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +F + +NV G     ++M        V T   T LI+ LG+ G ++EA   ++ M++  C
Sbjct: 274 LFFKLDNVHGALSLFEEMRYMYCRPDVFT--YTELIRGLGKAGRIDEAYHFYHEMQREGC 331

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PD    N +IN L + G  +    L E+M +    C P+V TY  +I +  +       
Sbjct: 332 KPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVS--HCIPNVVTYNTIIKALFES------ 383

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
               + R+ E    F  M   G  P    Y+ LIDG CKT RIE+A+ L ++M++KG  P
Sbjct: 384 ----KSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPP 439

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
               Y S I         D A E+ ++++  N G  ++  Y  +I  L +AGR+ +A + 
Sbjct: 440 CPAAYCSLIDALGKAKRYDLACELFQELKE-NCGSSSARVYAVMIKHLGKAGRLDDAINL 498

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
             E+   G  P  Y Y  +   L  A    +LD+ L
Sbjct: 499 FDEMSKLGCTPNVYAYNALMSGLARA---CMLDEAL 531



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 139/327 (42%), Gaps = 41/327 (12%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKG----LWDFLKDMSRRGNGELV 167
           +++A  FYH ++R          CK   +V     N  G    L D LK     G    +
Sbjct: 316 IDEAYHFYHEMQR--------EGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCI 367

Query: 168 -TTSSVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
               +   +IK L E +  V+E  + F RMK     P  + Y+++I+  C+     KA  
Sbjct: 368 PNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMM 427

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG-----------MQTGCRKAIRR-------- 266
           LLE+M+  GF  PP    Y  LI +  K             ++  C  +  R        
Sbjct: 428 LLEEMDEKGF--PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKH 485

Query: 267 -----RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A +LF  M   G  P+V AYN L+ G  +   ++ AL     M + GC+P+
Sbjct: 486 LGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPD 545

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             +YN  +   +      +A+EM+  M+N +   P + SY  ++ AL  AG   EA + +
Sbjct: 546 INSYNIILNGLAKTGGPHRAMEMLTNMKN-STIKPDAVSYNTVLSALSHAGMFEEAAELM 604

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEE 408
            E+   G      TY  + +A+   ++
Sbjct: 605 KEMNALGFEYDLITYSSILEAIGKVDQ 631


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 125/245 (51%), Gaps = 17/245 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI   G+ G V+     F  MK+ +  PD   Y  +I+ LC+ G   +AR L  +M  
Sbjct: 361 TTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLS 420

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  PD  TYT LI  YCK G            + EA  L   M+ KG  P+VV Y  
Sbjct: 421 KGLK--PDEVTYTALIDGYCKAG-----------EMKEAFSLHNQMVEKGLTPNVVTYTA 467

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG CK   ++ A EL  +M++KG  PN  TYN+ I     V  I++A+++M +M +L 
Sbjct: 468 LVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEM-DLA 526

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
              P + +YT I+ A C+ G + +A + L  ++D G  P   T+ ++   +N      +L
Sbjct: 527 GFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVL---MNGFCMSGML 583

Query: 413 DDGLR 417
           +DG R
Sbjct: 584 EDGER 588



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 131/258 (50%), Gaps = 16/258 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           +E+T   +   + +   +K  +     M  +G    V T   T L+  L + G V+ A  
Sbjct: 426 DEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVT--YTALVDGLCKCGEVDIANE 483

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
             + M +   +P+V  YN +IN LC+VGN  +A  L+E+M+L GF   PD  TYT ++ +
Sbjct: 484 LLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFF--PDTITYTTIMDA 541

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           YCK G            + +A+ L R+ML KG  P +V +N L++G C +  +E    L 
Sbjct: 542 YCKMG-----------EMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLI 590

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
             M  KG +PN  T+NS ++ Y + N +   IE+ + M +    VP +++Y  +I   C+
Sbjct: 591 KWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGM-HAQGVVPDTNTYNILIKGHCK 649

Query: 371 AGRVLEARDFLAELVDGG 388
           A  + EA     E+V+ G
Sbjct: 650 ARNMKEAWFLHKEMVEKG 667



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 130/259 (50%), Gaps = 18/259 (6%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLL 227
           T S   ++ +L + G V EA +   +M +FR   PDV +Y+V+++  C+V    K   L+
Sbjct: 252 TVSYNIILHLLCQLGKVKEAHSLLIQM-EFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLM 310

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           E+++  G +  P+ YTY  +IS  CK G           R+ EA  + R+M  +   PD 
Sbjct: 311 EELQRKGLK--PNQYTYNSIISFLCKTG-----------RVVEAEQVLRVMKNQRIFPDN 357

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y  LI G  K+  +    +LFD+M +K  +P+ VTY S I       ++ +A ++  +
Sbjct: 358 VVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSE 417

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           M  L+ G+ P   +YT +I   C+AG + EA     ++V+ G  P   TY  + D L   
Sbjct: 418 M--LSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKC 475

Query: 407 EEPSLLDDGLRKRIRDGIE 425
            E  + ++ L +    G++
Sbjct: 476 GEVDIANELLHEMSEKGLQ 494



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 116/252 (46%), Gaps = 16/252 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L + G V EA      MK  R  PD   Y  +I+   + GN +    L ++M+   
Sbjct: 328 IISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRK- 386

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PD  TYT +I   C+ G           ++ EA  LF  ML KG  PD V Y  LI
Sbjct: 387 -KIVPDFVTYTSMIHGLCQAG-----------KVVEARKLFSEMLSKGLKPDEVTYTALI 434

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK   ++ A  L + M +KG  PN VTY + +       E+D A E++ +M     G
Sbjct: 435 DGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSE--KG 492

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
           + P   +Y  +I+ LC+ G + +A   + E+   G  P   TY  + DA     E +   
Sbjct: 493 LQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAH 552

Query: 414 DGLRKRIRDGIE 425
           + LR  +  G++
Sbjct: 553 ELLRIMLDKGLQ 564



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 139/317 (43%), Gaps = 63/317 (19%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-FNKARFLLEQM-EL 232
             +VL E GL+ EA   F ++  +     V + N+    L R+ N F+  R       E 
Sbjct: 187 FFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLF---LARLSNSFDGIRTAFRVFREY 243

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
                  +  +Y I++   C+ G           ++ EA+ L   M F+G VPDVV+Y+ 
Sbjct: 244 SEVGVCWNTVSYNIILHLLCQLG-----------KVKEAHSLLIQMEFRGNVPDVVSYSV 292

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN-- 350
           ++DG C+  ++ + L+L +++ +KG  PN+ TYNS I +      + +A +++R M+N  
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR 352

Query: 351 ----------LNHG----------------------VPTSSSYTPIIHALCEAGRVLEAR 378
                     L  G                      VP   +YT +IH LC+AG+V+EAR
Sbjct: 353 IFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEAR 412

Query: 379 DFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKV 434
              +E++  G  P E TY  +    C A    E  SL +  + K +   +         V
Sbjct: 413 KLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNV---------V 463

Query: 435 KPIMKHKELLKCGEIDI 451
                   L KCGE+DI
Sbjct: 464 TYTALVDGLCKCGEVDI 480



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 13/128 (10%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+   +N ++   C   N      + + M   G    PD  TY ILI  +CK        
Sbjct: 600 PNATTFNSLMKQYCIRNNMRATIEIYKGMHAQG--VVPDTNTYNILIKGHCK-------- 649

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               R + EA  L + M+ KGF     +YN LI G  K  + E A +LF++M   G I  
Sbjct: 650 ---ARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAE 706

Query: 322 RVTYNSFI 329
           +  Y+ F+
Sbjct: 707 KEIYDIFV 714



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN++I   C+  N  +A FL ++M   GF       +Y  LI  + K        
Sbjct: 635 PDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAA--SYNSLIKGFYK-------- 684

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
              R++  EA  LF  M   GF+ +   Y+  +D   +    E  LEL D+  +K
Sbjct: 685 ---RKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDEAIEK 736


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 128/254 (50%), Gaps = 16/254 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+    +  V +A+     M++  C+PDV  YNV+IN +C+ G  ++A   L  M  
Sbjct: 247 TILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM-- 304

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
           P + C P+V T+ I++ S C  G           R  +A  L   ML KG  P VV +N 
Sbjct: 305 PSYGCKPNVITHNIILRSMCSTG-----------RWMDAERLLSDMLRKGCSPSVVTFNI 353

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI+  C+   + RA+++ + M K GC+PN ++YN  +  +    ++D+AIE +  M  ++
Sbjct: 354 LINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIM--VS 411

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
            G  P   +Y  ++ ALC+ G+V  A + L +L   G  P   TY  V D L    +   
Sbjct: 412 RGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEY 471

Query: 412 LDDGLRKRIRDGIE 425
             + L +  R G++
Sbjct: 472 AVELLEEMRRKGLK 485



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 131/250 (52%), Gaps = 16/250 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L DM R+G    V T ++  LI  L  + L+  A+    +M +  C P+  +YN +++ 
Sbjct: 335 LLSDMLRKGCSPSVVTFNI--LINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHG 392

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+    ++A   LE M   G  C PD+ TY  L+++ CK G           ++  A  
Sbjct: 393 FCQEKKMDRAIEYLEIMVSRG--CYPDIVTYNTLLTALCKDG-----------KVDAAVE 439

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +   +  KG  P ++ YN +IDG  K  + E A+EL ++M +KG  P+ +TY++ +R   
Sbjct: 440 ILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLG 499

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
              ++D+AI++   M+ L+   P++ +Y  I+  LC+A +   A DFLA +V+ G  P E
Sbjct: 500 REGKVDEAIKIFHDMEGLSIK-PSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTE 558

Query: 394 YTYKLVCDAL 403
            TY ++ + +
Sbjct: 559 ATYTILIEGI 568



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 113/230 (49%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++ L + G + EA+    R  Q  C PDV  Y ++I A C      +A  LL++M   G
Sbjct: 214 ILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKG 273

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PDV TY +LI+  CK G           R+ EA      M   G  P+V+ +N ++
Sbjct: 274 --CKPDVVTYNVLINGICKEG-----------RLDEAIKFLNNMPSYGCKPNVITHNIIL 320

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              C T R   A  L  DM +KGC P+ VT+N  I +      + +AI+++ KM    HG
Sbjct: 321 RSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMP--KHG 378

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            VP S SY P++H  C+  ++  A ++L  +V  G  P   TY  +  AL
Sbjct: 379 CVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTAL 428



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 19/242 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
            G++    + T LI+     G   +A      ++     PDV  YNV+I   C+ G  +K
Sbjct: 135 QGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDK 194

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  +LE+M +      PDV TY  ++ S C  G           ++ EA  +    L + 
Sbjct: 195 ALEVLERMSVA-----PDVVTYNTILRSLCDSG-----------KLKEAMEVLDRQLQRE 238

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PDV+ Y  LI+  C    + +A++L D+M KKGC P+ VTYN  I        +D+AI
Sbjct: 239 CYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAI 298

Query: 343 EMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           + +  M   ++G  P   ++  I+ ++C  GR ++A   L++++  G  P   T+ ++ +
Sbjct: 299 KFLNNMP--SYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILIN 356

Query: 402 AL 403
            L
Sbjct: 357 FL 358



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 10/175 (5%)

Query: 250 SYCKYGMQTGCRKAIRR-RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
           S+ ++      RK +R   + E       M+++G +PDV+A   LI G C++ + ++A  
Sbjct: 103 SFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATR 162

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           + + +   G +P+ +TYN  I  Y    EIDKA+E++ +M       P   +Y  I+ +L
Sbjct: 163 IMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERMSV----APDVVTYNTILRSL 218

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKR 419
           C++G++ EA + L   +     P   TY ++    C+     +   LLD+ +RK+
Sbjct: 219 CDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDE-MRKK 272



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 17/178 (9%)

Query: 153 DFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           ++L+ M  RG   ++VT ++   L+  L ++G V+ A+    ++    C P +  YN VI
Sbjct: 404 EYLEIMVSRGCYPDIVTYNT---LLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVI 460

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + L +VG    A  LLE+M   G +  PD+ TY+ L+    + G           ++ EA
Sbjct: 461 DGLTKVGKTEYAVELLEEMRRKGLK--PDIITYSTLLRGLGREG-----------KVDEA 507

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
             +F  M      P  V YN ++ G CK  +  RA++    M +KGC P   TY   I
Sbjct: 508 IKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILI 565


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 28/254 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK L ++GL+  AL     M +  C P+++ YN+VIN LC++G  + A  L++     G
Sbjct: 371 LIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKG 430

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW------------------------- 269
             CPPD++TY  LI  YCK  ++      +  R+W                         
Sbjct: 431 --CPPDIFTYNTLIDGYCKQ-LKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSE 487

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           E   +F+ M  KG  P+++ YN ++D  CK  ++  A++L  +M  KG  P+ V++ +  
Sbjct: 488 EVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLF 547

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             +  + +ID A ++ R+M+       T+++Y  I+ A  E   +  A    + + + G 
Sbjct: 548 TGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGC 607

Query: 390 VPREYTYKLVCDAL 403
            P  YTY++V D  
Sbjct: 608 DPDNYTYRVVIDGF 621



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 152/349 (43%), Gaps = 43/349 (12%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           KA E ++  +    F H   T K +          + +   L +M    N  L+  + + 
Sbjct: 22  KALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLEGAYIE 81

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            + K  G +G V EA+ TF RM  + C P V+++N ++N L   G  N+A  +  +M   
Sbjct: 82  AM-KNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDR 140

Query: 234 GFRCPPDVYTYTILISSYCKYGM------------QTGCRK------AIRRRIWE----- 270
           G +   DVYTYTI I S+CK               + GC         +   +++     
Sbjct: 141 GVQ--SDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHD 198

Query: 271 -ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            A  LF  ML +   PDVVA+N L+   CK   +  +  L   + K+G  PN  T+N F+
Sbjct: 199 HARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFV 258

Query: 330 RYYSVVNEIDKAI---------EMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
           +       +D+A+         E +RKM  +N G  P   +Y  II   C+ G V +A  
Sbjct: 259 QGLCREGALDRAVRNSRVVEAEEYLRKM--VNGGFEPDDLTYNSIIDGYCKKGMVQDANR 316

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEP----SLLDDGLRKRIRDGI 424
            L + V  G  P E+TY  + +      +P    ++  DGL K +R  I
Sbjct: 317 VLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSI 365



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 23/237 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA---------RF 225
           L+ VL ++GLV E+     ++ +    P+++ +N+ +  LCR G  ++A           
Sbjct: 222 LVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEE 281

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
            L +M   GF   PD  TY  +I  YCK GM           + +AN + +  +FKGF P
Sbjct: 282 YLRKMVNGGFE--PDDLTYNSIIDGYCKKGM-----------VQDANRVLKDAVFKGFKP 328

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           D   Y  LI+G CK    +RA+ +F D   KG  P+ V YN+ I+  S    I  A+++M
Sbjct: 329 DEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLM 388

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +M   N  +P   +Y  +I+ LC+ G V +A   + + +  G  P  +TY  + D 
Sbjct: 389 NEMAE-NGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDG 444



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 24/219 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +  ++ G +   + M ++ +    TT++   ++    E+  +N A+  F  MK   C 
Sbjct: 550 FCKIGDIDGAYQLFRRMEKQYD-VCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCD 608

Query: 202 PDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           PD Y Y VVI+  C++GN  +  +FLLE ME    R  P + T+  +++  C        
Sbjct: 609 PDNYTYRVVIDGFCKMGNITQGYKFLLENMEK---RFIPSLTTFGRVLNCLC-------- 657

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
              ++ ++ EA  +  LML KG VP+ V  N + +   K     +   L +D+ KKG   
Sbjct: 658 ---VKDKVHEAVGIIHLMLQKGIVPETV--NTIFEADKKVVAAPKI--LVEDLLKKG--- 707

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             + Y ++   Y  + +     + +  + +L+ G  +S+
Sbjct: 708 -HIAYYTYELLYDGIRDKKILKKRLPTVNSLHRGASSSA 745


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 133/280 (47%), Gaps = 31/280 (11%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG  +   + T ++  L +   + EA+A   ++    C P +  YN ++N LC++G   +
Sbjct: 253 NGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE 312

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK------------------YGMQTGCRKAI 264
           A  LL ++   G  C PDV TYT LI    K                    + T C  A+
Sbjct: 313 AIDLLRKIVDNG--CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTAL 370

Query: 265 RR------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
            R      +I +A+ +++ M   G VPDVV  + +IDG  K  RI  A+ +F  M  +G 
Sbjct: 371 IRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGL 430

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            PN V Y++ I       ++D A+EM+ +M+      P + +Y  +I  LC++G V  AR
Sbjct: 431 APNEVVYSALIHGLCKARKMDCALEMLAQMKKA-FCTPDTITYNILIDGLCKSGDVEAAR 489

Query: 379 DFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDD 414
            F  E+++ G  P  YTY +    +C A N      +LDD
Sbjct: 490 AFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDD 529



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 113/280 (40%), Gaps = 44/280 (15%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +   K+M+ RG    + T   T LI+ L + G + +A + +  M    C PDV   + +I
Sbjct: 349 YKLFKEMASRGLA--LDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMI 406

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + L + G    A  + + ME  G    P+   Y+ LI   CK            R++  A
Sbjct: 407 DGLSKAGRIGAAVRIFKSMEARGL--APNEVVYSALIHGLCKA-----------RKMDCA 453

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +   M      PD + YN LIDG CK+  +E A   FD+M + GC P+  TYN  I  
Sbjct: 454 LEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 513

Query: 332 YSVVNEIDKAIEMMRKMQN-----------------------LNH-----GVPTSSSYTP 363
                  D A  ++  M +                       L H     GV  S + T 
Sbjct: 514 LCKAGNTDAACGVLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTR 573

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +I  LC+A RV EA      +   G +P  Y Y  +  AL
Sbjct: 574 LIFHLCKANRVDEAVSLFNAIRKEG-MPHPYAYNSIISAL 612



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 107/243 (44%), Gaps = 26/243 (10%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           AL    +MK+  C PD   YN++I+ LC+ G+   AR   ++M   G  C PDVYTY IL
Sbjct: 453 ALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAG--CKPDVYTYNIL 510

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFR---------------LMLF----KGFVPDVV 288
           IS  CK G  T     +   +  +  ++                 MLF    +  V +  
Sbjct: 511 ISGLCKAG-NTDAACGVLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQ 569

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
               LI   CK  R++ A+ LF+ + K+G +P+   YNS I       ++++   + ++M
Sbjct: 570 TRTRLIFHLCKANRVDEAVSLFNAIRKEG-MPHPYAYNSIISALIKSGKVNEGQAVYQEM 628

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAE 407
                  P   +Y  +++ +  A R+  A  +  E+   G VP     +KL  D L    
Sbjct: 629 TRWWK--PDRVTYNALLNGMIGANRMDRAHYYYLEMTGRGYVPPVSILHKLADDRLKDMP 686

Query: 408 EPS 410
            P+
Sbjct: 687 GPA 689



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 113/264 (42%), Gaps = 18/264 (6%)

Query: 126 FDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV 185
           F F H+  T   +  VFAR    +   + LK+         V T +V      L  E   
Sbjct: 113 FGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLARE--P 170

Query: 186 NEALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
            EA A    M++ F   P +  +N+V++ LC+ G    A   ++  E      P    T+
Sbjct: 171 EEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAA---MDHFEAVRRSMPVSAATF 227

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           +ILI+   K GM           + +A+ L +     G   D+  Y  +++   K  +I+
Sbjct: 228 SILINGLVKAGM-----------MIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQ 276

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A+ L + +   GC P   TYN+ +     +  +++AI+++RK+ + N   P   +YT +
Sbjct: 277 EAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD-NGCTPDVVTYTSL 335

Query: 365 IHALCEAGRVLEARDFLAELVDGG 388
           I  L +  R  EA     E+   G
Sbjct: 336 IDGLGKEKRSFEAYKLFKEMASRG 359



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK-GCIPNRVT 324
           +R  EA +L +  L   F PDV  +N LI G C     E A  +  +M +  G  P+  T
Sbjct: 133 KRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKT 192

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAE 383
           +N  +     + +  K +  M   + +   +P S+ +++ +I+ L +AG +++A     E
Sbjct: 193 HNLVLHG---LCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQE 249

Query: 384 LVDGGSVPREYTYKLVCDAL 403
               G     +TY  + + L
Sbjct: 250 TTTNGCTIDIHTYTAIVNWL 269


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 138/299 (46%), Gaps = 25/299 (8%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
            KA      +ER F    + +T   +   + R  +     D L+ M   G     TT ++
Sbjct: 193 GKAASLVRALERRFP--PDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKTTYNI 250

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQF-----RCRPDVYAYNVVINALCRVGNFNKARFLL 227
             ++K     G +  A   F +MK+       C+PDV +Y  V++ L   G  +KAR + 
Sbjct: 251 --ILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVF 308

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M   G  C P + TY  LI   CK G            + +A  +F  M+ KG++P+V
Sbjct: 309 DEMSREG--CTPSIATYNALIQVTCKKG-----------NVEDAVAVFDDMIRKGYIPNV 355

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y  LI G C   +I+RA++L D M ++GC PN  TYN  I Y     +I+KA+ +   
Sbjct: 356 VTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFET 415

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLE---ARDFLAELVDGGSVPREYTYKLVCDAL 403
           M      +P   +Y  II A+    R  +   A   + E+VD G +PR + +  V + L
Sbjct: 416 MSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPRRFMFNRVLNGL 474


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 120/237 (50%), Gaps = 15/237 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL-EQ 229
           S   LI+ L   G +++A   F  M  F C PD+ +YN +IN  CRV   +K   LL E 
Sbjct: 216 SFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKED 275

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M + G    PDV TYT +IS YCK G            +  A+ LF  M+  G  P+   
Sbjct: 276 MLIKG--VSPDVITYTSIISGYCKLG-----------DMKAASELFDEMVSSGIKPNDFT 322

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           +N LIDG  K   +  A+ +++ M   GC+P+ VT+ S I  Y    E+++ +++  +M+
Sbjct: 323 FNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMK 382

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
             N   P   +Y  +I+ALC+  R+ EAR+FL  L     VP+ + Y  V D    A
Sbjct: 383 VRNLS-PNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKA 438



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 13/236 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T ++   L++ L + GL + A   F  M+     PD     +++++  R+G  + A+  L
Sbjct: 108 TFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFL 167

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            ++   G +  P  + Y  L++   K  +           + EA  LFR  L   FVPDV
Sbjct: 168 NEVHCYGIKVSP--FVYNNLLNMLVKQNL-----------VDEAVLLFREHLEPYFVPDV 214

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
            ++N LI G C+   I++A E F +M   GC P+ V+YN+ I  +  VNEI K  +++++
Sbjct: 215 YSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKE 274

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              +    P   +YT II   C+ G +  A +   E+V  G  P ++T+ ++ D  
Sbjct: 275 DMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGF 330



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 14/203 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI   G+ G +  A+  + +M    C PDV  +  +I+  CR G  N+   L E+M++  
Sbjct: 326 LIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRN 385

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+VYTY +LI++ CK             RI EA +  R +     VP    YN +I
Sbjct: 386 LS--PNVYTYAVLINALCK-----------ENRIREARNFLRHLKSSEVVPKPFIYNPVI 432

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK  +++ A  +  +M +K C P+++T+   I    +   + +AI    KM  +N  
Sbjct: 433 DGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEIN-C 491

Query: 355 VPTSSSYTPIIHALCEAGRVLEA 377
           VP   +   +I  L +AG   EA
Sbjct: 492 VPDEITINSLISCLLKAGMPNEA 514



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 88/198 (44%), Gaps = 14/198 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + T LI     EG VN+ L  +  MK     P+VY Y V+INALC+     +A
Sbjct: 350 GCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREA 409

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           R  L    L      P  + Y  +I  +CK G           ++ EAN +   M  K  
Sbjct: 410 RNFLRH--LKSSEVVPKPFIYNPVIDGFCKAG-----------KVDEANFIVAEMQEKKC 456

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PD + +  LI G C   R+  A+  F  M +  C+P+ +T NS I         ++A +
Sbjct: 457 RPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQ 516

Query: 344 MMR-KMQNLNHGVPTSSS 360
           + +  +Q LN G+ +  S
Sbjct: 517 IKQAALQKLNLGLSSLGS 534


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 120/237 (50%), Gaps = 15/237 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL-EQ 229
           S   LI+ L   G +++A   F  M  F C PD+ +YN +IN  CRV   +K   LL E 
Sbjct: 216 SFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKED 275

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M + G    PDV TYT +IS YCK G            +  A+ LF  M+  G  P+   
Sbjct: 276 MLIKG--VSPDVITYTSIISGYCKLG-----------DMKAASELFDEMVSSGIKPNDFT 322

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           +N LIDG  K   +  A+ +++ M   GC+P+ VT+ S I  Y    E+++ +++  +M+
Sbjct: 323 FNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMK 382

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
             N   P   +Y  +I+ALC+  R+ EAR+FL  L     VP+ + Y  V D    A
Sbjct: 383 VRNLS-PNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKA 438



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 13/236 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T ++   L++ L + GL + A   F  M+     PD     +++++  R+G  + A+  L
Sbjct: 108 TFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFL 167

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            ++   G +  P  + Y  L++   K  +           + EA  LFR  L   FVPDV
Sbjct: 168 NEVHCYGIKVSP--FVYNNLLNMLVKQNL-----------VDEAVLLFREHLEPYFVPDV 214

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
            ++N LI G C+   I++A E F +M   GC P+ V+YN+ I  +  VNEI K  +++++
Sbjct: 215 YSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKE 274

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              +    P   +YT II   C+ G +  A +   E+V  G  P ++T+ ++ D  
Sbjct: 275 DMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGF 330



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 14/203 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI   G+ G +  A+  + +M    C PDV  +  +I+  CR G  N+   L E+M++  
Sbjct: 326 LIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRN 385

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+VYTY +LI++ CK             RI EA +  R +     VP    YN +I
Sbjct: 386 LS--PNVYTYAVLINALCK-----------ENRIREARNFLRHLKSSEVVPKPFIYNPVI 432

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK  +++ A  +  +M +K C P+++T+   I    +   + +AI    KM  +N  
Sbjct: 433 DGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEIN-C 491

Query: 355 VPTSSSYTPIIHALCEAGRVLEA 377
           VP   +   +I  L +AG   EA
Sbjct: 492 VPDEITINSLISCLLKAGMPNEA 514



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 88/198 (44%), Gaps = 14/198 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + T LI     EG VN+ L  +  MK     P+VY Y V+INALC+     +A
Sbjct: 350 GCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREA 409

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           R  L    L      P  + Y  +I  +CK G           ++ EAN +   M  K  
Sbjct: 410 RNFLRH--LKSSEVVPKPFIYNPVIDGFCKAG-----------KVDEANFIVAEMQEKKC 456

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PD + +  LI G C   R+  A+  F  M +  C+P+ +T NS I         ++A +
Sbjct: 457 RPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQ 516

Query: 344 MMR-KMQNLNHGVPTSSS 360
           + +  +Q LN G+ +  S
Sbjct: 517 IKQAALQKLNLGLSSLGS 534


>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Brachypodium distachyon]
          Length = 496

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 143/313 (45%), Gaps = 25/313 (7%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           +KA      +ER F    + +T   +   + R  +     D L+ M+  G     TT +V
Sbjct: 187 SKAASLVRALERRFP--PDVVTYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNV 244

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQF-----RCRPDVYAYNVVINALCRVGNFNKARFLL 227
             ++K     G +  A   F +MK+       C+PDV +Y  +I+ L   G  +KAR L 
Sbjct: 245 --ILKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLF 302

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M   G  CPP + TY  LI   CK G            + +A  +F  M+ K ++P+V
Sbjct: 303 DEMSKEG--CPPTIATYNALIQVICKKG-----------NVEDAVTVFDDMIRKDYIPNV 349

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y  LI G C   +I+RA++L + M  +GC P   TYN  IRY     E+DKA+ +  +
Sbjct: 350 VTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGEMDKALHLFER 409

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLE---ARDFLAELVDGGSVPREYTYKLVCDALN 404
           M      +P   +Y  +I A+    R  +   A   + E+V+ G +PR +    V + L 
Sbjct: 410 MSKGEECLPNQDTYNIVISAMFVRKRAEDMAIAARMVMEMVERGYLPRRFMLNRVLNGLM 469

Query: 405 AAEEPSLLDDGLR 417
                 L  D LR
Sbjct: 470 LTGNQQLSRDLLR 482


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 28/326 (8%)

Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           R+  K  +G+N   +F+ W  +  ++ H+  T   +            +W  +++M R  
Sbjct: 94  REIMKTDIGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNP 153

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
              +VT + ++ ++++LG   +V++A+A FY++K  +C+P   AYN +I  L   G + K
Sbjct: 154 IC-VVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEK 212

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR--------------- 267
              L  +M   G  C PD  TY+ LIS++CK G +    + +                  
Sbjct: 213 VHELYNEMSTEG-HCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTML 271

Query: 268 ---------IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                    +  A  LF  M  +   PDV  Y  LI G  K  RI+ A   F +M ++GC
Sbjct: 272 VALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGC 331

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLEA 377
            P+ +  N+ I +      +D A+++ ++M  L   +P+  +Y  II AL E+  R  E 
Sbjct: 332 RPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTL-RCIPSVVTYNTIIKALFESKSRASEV 390

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
             +   + + G  P  +TY ++ D  
Sbjct: 391 PSWFERMKESGISPSSFTYSILIDGF 416



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 128/276 (46%), Gaps = 18/276 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +F + N+V G     ++M  +     V T   T LI+ LG+ G ++EA   FY M++  C
Sbjct: 274 LFFKLNDVHGALSLFEEMRHQYCRPDVFT--YTELIRGLGKAGRIDEAYHFFYEMQREGC 331

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           RPD    N +IN L + G  + A  L +  E+   RC P V TY  +I +  +       
Sbjct: 332 RPDTIVMNNMINFLGKAGRLDDAMKLFQ--EMGTLRCIPSVVTYNTIIKALFES------ 383

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
               + R  E    F  M   G  P    Y+ LIDG CKT R+E+A+ L ++M++KG  P
Sbjct: 384 ----KSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 439

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
               Y S I         D A E+ ++++  N G  +S  Y  +I  L +AGR+ +A + 
Sbjct: 440 CPAAYCSLIDALGKAKRYDLACELFQELKE-NCGSSSSRVYAVMIKHLGKAGRLDDAINM 498

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
             E+   G  P  Y Y  +   L       +LD+ L
Sbjct: 499 FDEMNKLGCAPDVYAYNALMSGL---ARTGMLDEAL 531



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 54/264 (20%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +   +   + F  +M R G      T  +  +I  LG+ G +++A+  F  M   RC 
Sbjct: 310 LGKAGRIDEAYHFFYEMQREGCRP--DTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCI 367

Query: 202 PDVYAYNVVINALCRVGN-FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           P V  YN +I AL    +  ++     E+M+  G    P  +TY+ILI  +CK       
Sbjct: 368 PSVVTYNTIIKALFESKSRASEVPSWFERMKESGI--SPSSFTYSILIDGFCKTN----- 420

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID--GCCKTY----------------- 301
                 R+ +A  L   M  KGF P   AY  LID  G  K Y                 
Sbjct: 421 ------RMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSS 474

Query: 302 ----------------RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
                           R++ A+ +FD+MNK GC P+   YN+ +   +    +D+A+  M
Sbjct: 475 SSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTM 534

Query: 346 RKMQNLNHG-VPTSSSYTPIIHAL 368
           R+MQ   HG +P  +SY  I++ L
Sbjct: 535 RRMQ--EHGCIPDINSYNIILNGL 556



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +IK LG+ G +++A+  F  M +  C PDVYAYN +++ L R G  ++A   + +M+  G
Sbjct: 482 MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHG 541

Query: 235 FRCPPDVYTYTILISSYCK 253
             C PD+ +Y I+++   K
Sbjct: 542 --CIPDINSYNIILNGLQK 558



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 37/199 (18%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIV------------FARGNNVKGLWDFLKDMSR 160
           ++A+E   W ER           KE GI             F + N ++     L++M  
Sbjct: 385 SRASEVPSWFERM----------KESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDE 434

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           +G       ++   LI  LG+    + A   F  +K+         Y V+I  L + G  
Sbjct: 435 KGFPP--CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRL 492

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           + A  + ++M   G  C PDVY Y  L+S   + GM           + EA    R M  
Sbjct: 493 DDAINMFDEMNKLG--CAPDVYAYNALMSGLARTGM-----------LDEALSTMRRMQE 539

Query: 281 KGFVPDVVAYNCLIDGCCK 299
            G +PD+ +YN +++G  K
Sbjct: 540 HGCIPDINSYNIILNGLQK 558


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 148/331 (44%), Gaps = 28/331 (8%)

Query: 83  LKKEAYNIANNVLVLGP----------AAYRDPQKVTLGLNKATEFYHWVERFFDFFHNE 132
           L   ++++ N   VLGP          AA     KVT     A  F+ W      F H+ 
Sbjct: 63  LDGSSWSVHNIRNVLGPVHGQVLGSHVAAVLRSLKVT---GTAISFFRWAGEQAGFQHDV 119

Query: 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF 192
            T   +  +     N    +   ++M + G      T S   LI+        ++A+  F
Sbjct: 120 FTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAP--NTFSFNILIRSFARTRRADDAVTCF 177

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
             MK+ RC+PD++ + ++++ LC+ G   KA  +  +M   GF  PPD   +T ++ +  
Sbjct: 178 EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGF-VPPDRALHTAMVRTLL 236

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           K            +R+ EA  +F  M   GF PD +AYN +IDG  K    + AL++ D+
Sbjct: 237 KA-----------KRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDN 285

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           M  K C+P  VTY   +        +++A E+ R M       P S  YT +IH   ++G
Sbjct: 286 MLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGF-RPNSVIYTSLIHGFAKSG 344

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           R+ EA     E+V+ G  P   T+ ++ D L
Sbjct: 345 RMKEACSLFDEMVEAGYRPDVITHTVMIDGL 375



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 115/242 (47%), Gaps = 17/242 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L + G   EAL     M    C P    Y +++N+LC+ G   +A  L   M   G
Sbjct: 266 MIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           FR  P+   YT LI  + K G           R+ EA  LF  M+  G+ PDV+ +  +I
Sbjct: 326 FR--PNSVIYTSLIHGFAKSG-----------RMKEACSLFDEMVEAGYRPDVITHTVMI 372

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+   E+A + F++M + GC PN VTY + I+  S +  +  A  +M+ M  + HG
Sbjct: 373 DGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGM--IAHG 430

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL-NAAEEPSLL 412
             P S +Y  ++   C+ GR+ EA   L EL    S P    Y  + + L +       L
Sbjct: 431 CFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTL 490

Query: 413 DD 414
           DD
Sbjct: 491 DD 492



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 109/236 (46%), Gaps = 13/236 (5%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    + G + EA + F  M +   RPDV  + V+I+ LC+ GNF +A    E+M  
Sbjct: 334 TSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMR 393

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C P+V TYT +I    K G           R+  A  + + M+  G  PD V Y C
Sbjct: 394 GG--CKPNVVTYTTIIQGLSKIG-----------RVANAFRIMKGMIAHGCFPDSVTYIC 440

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG CK  R++ A +L D+++K    PN   Y+S +        ++K ++ + +     
Sbjct: 441 LLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAA 500

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
                      II  LC+ GR+ EA      +V  G  P   TY ++ + L  + E
Sbjct: 501 AETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRE 556



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 121/285 (42%), Gaps = 29/285 (10%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G +V+   D L + S+    E +       +I  L + G ++EA   F RM    C+PD 
Sbjct: 483 GGSVEKTLDDLFEQSK-AAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDA 541

Query: 205 YAYNVVINALCRV--GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
             YN++IN LCR       +A  LL  +E  G+   PD  TYT L    CK G      K
Sbjct: 542 TTYNILINGLCRSRENRVERAFALLHDLEKVGYL--PDAVTYTPLCIGLCKIGEVDRAVK 599

Query: 263 AIRR---RIWEAN---------------------HLFRLMLFKGFVPDVVAYNCLIDGCC 298
            +     R W A+                      LF+ M+ +G  PD  AY C+I+G  
Sbjct: 600 MLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLI 659

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K  ++E A + FD+M  KG  P   TY + ++       +D+A      M      V + 
Sbjct: 660 KVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSV 719

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             Y  +IH  C+A +V  A     +++  G+VP   T   + D L
Sbjct: 720 MIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGL 764



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 125/269 (46%), Gaps = 31/269 (11%)

Query: 122 VERFFDFFHN---------EMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSS 171
           VER F   H+          +T   + I   +   V      L++ S RG N ++V   +
Sbjct: 559 VERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVV---A 615

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
            T L   L  +G V+ A++ F  M +    PD  AY  +IN L +V     A    ++M 
Sbjct: 616 YTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMI 675

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAY 290
             G +  P V TYT L+ + C  G            + EA H F  ML +G  V  V+ Y
Sbjct: 676 GKGQK--PTVATYTALVQALCHAG-----------NVDEAFHRFESMLARGELVGSVMIY 722

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + LI G CK  +++ AL+LF+DM  +G +P  VT  S         + +KA E++++M  
Sbjct: 723 DALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAA 782

Query: 351 LNHGVPTSSSYTPIIHAL---CEAGRVLE 376
                P ++++T I+  L    E+G++L+
Sbjct: 783 -GGSPPHAATFTAILDGLRKSDESGKLLK 810



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 4/145 (2%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           ML  G  P+  ++N LI    +T R + A+  F+ M +K C P+  T+   +        
Sbjct: 145 MLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGM 204

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            +KA E+  +M  +    P  + +T ++  L +A RV EAR+   ++   G  P    Y 
Sbjct: 205 DEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYN 264

Query: 398 LVCDAL----NAAEEPSLLDDGLRK 418
            + D L    +A E   +LD+ L K
Sbjct: 265 TMIDGLAKAGHAQEALKVLDNMLAK 289


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 148/331 (44%), Gaps = 28/331 (8%)

Query: 83  LKKEAYNIANNVLVLGP----------AAYRDPQKVTLGLNKATEFYHWVERFFDFFHNE 132
           L   ++++ N   VLGP          AA     KVT     A  F+ W      F H+ 
Sbjct: 63  LDGSSWSVHNIRNVLGPVHGQVLGSHVAAVLRSLKVT---GTAISFFRWAGEQAGFQHDV 119

Query: 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF 192
            T   +  +     N    +   ++M + G      T S   LI+        ++A+  F
Sbjct: 120 FTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAP--NTFSFNILIRSFARTRRADDAVTCF 177

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
             MK+ RC+PD++ + ++++ LC+ G   KA  +  +M   GF  PPD   +T ++ +  
Sbjct: 178 EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGF-VPPDRALHTAMVRTLL 236

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           K            +R+ EA  +F  M   GF PD +AYN +IDG  K    + AL++ D+
Sbjct: 237 KA-----------KRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDN 285

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           M  K C+P  VTY   +        +++A E+ R M       P S  YT +IH   ++G
Sbjct: 286 MLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGF-RPNSVIYTSLIHGFAKSG 344

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           R+ EA     E+V+ G  P   T+ ++ D L
Sbjct: 345 RMKEACSLFDEMVEAGYRPDVITHTVMIDGL 375



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 115/242 (47%), Gaps = 17/242 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L + G   EAL     M    C P    Y +++N+LC+ G   +A  L   M   G
Sbjct: 266 MIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           FR  P+   YT LI  + K G           R+ EA  LF  M+  G+ PDV+ +  +I
Sbjct: 326 FR--PNSVIYTSLIHGFAKSG-----------RMKEACSLFDEMVEAGYRPDVITHTVMI 372

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+   E+A + F++M + GC PN VTY + I+  S +  +  A  +M+ M  + HG
Sbjct: 373 DGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGM--IAHG 430

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL-NAAEEPSLL 412
             P S +Y  ++   C+ GR+ EA   L EL    S P    Y  +   L +     + L
Sbjct: 431 CFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTL 490

Query: 413 DD 414
           DD
Sbjct: 491 DD 492



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 117/241 (48%), Gaps = 23/241 (9%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    + G + EA + F  M +   RPDV  + V+I+ LC+ GNF +A    E+M  
Sbjct: 334 TSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMR 393

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C P+V TYT +I    K G           R+  A  + + M+  G  PD V Y C
Sbjct: 394 GG--CKPNVVTYTTIIQGLSKIG-----------RVANAFRIMKGMIAHGCFPDSVTYIC 440

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY----SVVNEIDKAIEMMR-K 347
           L+DG CK  R++ A +L D+++K    PN   Y+S ++      SV N +D   E  +  
Sbjct: 441 LLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAA 500

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
            +NL+ G+  S     II  LC+ GR+ EA      +V  G  P   TY ++ + L  + 
Sbjct: 501 AENLDPGLCCS-----IIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSR 555

Query: 408 E 408
           E
Sbjct: 556 E 556



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 123/286 (43%), Gaps = 31/286 (10%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV-LGEEGLVNEALATFYRMKQFRCRPD 203
           G +V+   D L + S+     L     + C I V L + G ++EA   F RM    C+PD
Sbjct: 483 GGSVENTLDDLFEQSKAAAENL--DPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPD 540

Query: 204 VYAYNVVINALCRV--GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
              YN++IN LCR       +A  LL  +E+ G+   PD  TYT L    CK G      
Sbjct: 541 ATTYNILINGLCRSRENRVERAFALLHDLEMVGYL--PDAVTYTPLCIGLCKIGEVDRAV 598

Query: 262 KAIRR---RIWEAN---------------------HLFRLMLFKGFVPDVVAYNCLIDGC 297
           K +     R W A+                      LF+ M+ +G  PD  AY C+I+G 
Sbjct: 599 KMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGL 658

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
            K  ++E A + FD+M  KG  P   TY + ++       +D+A      M      V +
Sbjct: 659 IKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGS 718

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              Y  +IH  C+A +V  A     +++  G+VP   T   + D L
Sbjct: 719 VMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGL 764



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 124/269 (46%), Gaps = 31/269 (11%)

Query: 122 VERFFDFFHN---------EMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSS 171
           VER F   H+          +T   + I   +   V      L++ S RG N ++V   +
Sbjct: 559 VERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVV---A 615

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
            T L   L  +G V+ A++ F  M +    PD  AY  +IN L +      A    ++M 
Sbjct: 616 YTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMI 675

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAY 290
             G +  P V TYT L+ + C  G            + EA H F  ML +G  V  V+ Y
Sbjct: 676 GKGQK--PTVATYTALVQALCHAG-----------NVDEAFHRFEGMLARGELVGSVMIY 722

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + LI G CK  +++ AL+LF+DM  +G +P  VT  S         + +KA E++++M  
Sbjct: 723 DALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAA 782

Query: 351 LNHGVPTSSSYTPIIHAL---CEAGRVLE 376
                P ++++T I+  L    E+G++L+
Sbjct: 783 -GGSPPHAATFTAILDGLRKSDESGKLLK 810



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 22/198 (11%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
             ++M R+G       ++  C+I  L +   + +A   F  M     +P V  Y  ++ A
Sbjct: 635 LFQEMVRQGGAP--DAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQA 692

Query: 214 LCRVGNFNKA--RF--LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           LC  GN ++A  RF  +L + EL G      V  Y  LI  +CK             ++ 
Sbjct: 693 LCHAGNVDEAFHRFEGMLARGELVG-----SVMIYDALIHGFCKA-----------LKVD 736

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            A  LF  M+ +G VP  V    L DG  ++ + E+A EL  +M   G  P+  T+ + +
Sbjct: 737 AALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAIL 796

Query: 330 RYYSVVNEIDKAIEMMRK 347
                 +E  K ++++++
Sbjct: 797 DGLRKSDESGKLLKLVQE 814



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 4/145 (2%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           ML  G  P+  ++N LI    +T R + A+  F+ M +K C P+  T+   +        
Sbjct: 145 MLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGM 204

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            +KA E+  +M  +    P  + +T ++  L +A RV EAR+   ++   G  P    Y 
Sbjct: 205 DEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYN 264

Query: 398 LVCDAL----NAAEEPSLLDDGLRK 418
            + D L    +A E   +LD+ L K
Sbjct: 265 TMIDGLAKAGHAQEALKVLDNMLAK 289


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 130/260 (50%), Gaps = 21/260 (8%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+    +  V  A+     M+   C PDV  YNV++N +C+ G  ++A   L  M  
Sbjct: 243 TILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM-- 300

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
           P   C P+V T+ I++ S C  G           R  +A  L   ML KGF P VV +N 
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTG-----------RWMDAEKLLADMLRKGFSPSVVTFNI 349

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI+  C+   + RA+++ + M + GC PN ++YN  +  +    ++D+AIE + +M  ++
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM--VS 407

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS- 410
            G  P   +Y  ++ ALC+ G+V +A + L +L   G  P   TY  V D L  A +   
Sbjct: 408 RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGK 467

Query: 411 ---LLDDGLRKRIR-DGIEY 426
              LLD+   K ++ D I Y
Sbjct: 468 AIKLLDEMRAKDLKPDTITY 487



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 133/259 (51%), Gaps = 22/259 (8%)

Query: 150 GLW----DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           G W      L DM R+G    V T ++  LI  L  +GL+  A+    +M Q  C+P+  
Sbjct: 323 GRWMDAEKLLADMLRKGFSPSVVTFNI--LINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           +YN +++  C+    ++A   LE+M   G  C PD+ TY  ++++ CK G          
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRG--CYPDIVTYNTMLTALCKDG---------- 428

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            ++ +A  +   +  KG  P ++ YN +IDG  K  +  +A++L D+M  K   P+ +TY
Sbjct: 429 -KVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY 487

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           +S +   S   ++D+AI+   + + +  G+ P + ++  I+  LC++ +   A DFL  +
Sbjct: 488 SSLVGGLSREGKVDEAIKFFHEFERM--GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFM 545

Query: 385 VDGGSVPREYTYKLVCDAL 403
           ++ G  P E +Y ++ + L
Sbjct: 546 INRGCKPNETSYTILIEGL 564



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 130/273 (47%), Gaps = 24/273 (8%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           E TC++ G+  A           L +M  RG    V T +V  L+  + +EG ++EA+  
Sbjct: 247 EATCRDSGVGHA--------MKLLDEMRDRGCTPDVVTYNV--LVNGICKEGRLDEAIKF 296

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              M    C+P+V  +N+++ ++C  G +  A  LL  M   GF   P V T+ ILI+  
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF--SPSVVTFNILINFL 354

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           C+ G+           +  A  +   M   G  P+ ++YN L+ G CK  +++RA+E  +
Sbjct: 355 CRKGL-----------LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE 403

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
            M  +GC P+ VTYN+ +       +++ A+E++ ++ +     P   +Y  +I  L +A
Sbjct: 404 RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCS-PVLITYNTVIDGLAKA 462

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           G+  +A   L E+      P   TY  +   L+
Sbjct: 463 GKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLS 495



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 21/221 (9%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+     +I   CR+G   KA  +LE +E  G    PDV TY ++IS YCK G      
Sbjct: 135 PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSG--AVPDVITYNVMISGYCKAG------ 186

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                   E N+   ++      PDVV YN ++   C + ++++A+E+ D M ++ C P+
Sbjct: 187 --------EINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPD 238

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            +TY   I      + +  A++++ +M++     P   +Y  +++ +C+ GR+ EA  FL
Sbjct: 239 VITYTILIEATCRDSGVGHAMKLLDEMRD-RGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297

Query: 382 AELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRK 418
            ++   G  P   T+ ++    C      +   LL D LRK
Sbjct: 298 NDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRK 338



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 15/198 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           ++L+ M  RG    + T +   ++  L ++G V +A+    ++    C P +  YN VI+
Sbjct: 400 EYLERMVSRGCYPDIVTYNT--MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVID 457

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            L + G   KA  LL++M     +  PD  TY+ L+    + G           ++ EA 
Sbjct: 458 GLAKAGKTGKAIKLLDEMRAKDLK--PDTITYSSLVGGLSREG-----------KVDEAI 504

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
             F      G  P+ V +N ++ G CK+ + +RA++    M  +GC PN  +Y   I   
Sbjct: 505 KFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGL 564

Query: 333 SVVNEIDKAIEMMRKMQN 350
           +      +A+E++ ++ N
Sbjct: 565 AYEGMAKEALELLNELCN 582



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 66/125 (52%), Gaps = 4/125 (3%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M++ G VPD++    LI G C+  +  +A ++ + +   G +P+ +TYN  I  Y    E
Sbjct: 128 MVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGE 187

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           I+ A+ ++ +M       P   +Y  I+ +LC++G++ +A + L  ++     P   TY 
Sbjct: 188 INNALSVLDRMSV----SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYT 243

Query: 398 LVCDA 402
           ++ +A
Sbjct: 244 ILIEA 248


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 126/253 (49%), Gaps = 27/253 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++ V+ + G    A+    +M++   + D   Y+++I+ LC+ G+ + A  L  +ME+ G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293

Query: 235 FRCPPDVYTYTILISSYCKYGMQTG----CRKAIRRRIW--------------------E 270
           F+   D+ TY  LI  +C  G         R  I+R+I                     E
Sbjct: 294 FK--ADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLRE 351

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A+ L + M+ +G  P+ + YN LIDG CK  R+E A+++ D M  KGC P+ +T+N  I 
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILIN 411

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            Y   N ID  +E+ R+M +L   +  + +Y  ++   C++G++  A+    E+V     
Sbjct: 412 GYCKANRIDDGLELFREM-SLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVR 470

Query: 391 PREYTYKLVCDAL 403
           P   +YK++ D L
Sbjct: 471 PDIVSYKILLDGL 483



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 128/282 (45%), Gaps = 28/282 (9%)

Query: 150 GLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           G WD     L+DM +R     V T SV  LI    +EG + EA      M Q    P+  
Sbjct: 312 GRWDDGAKLLRDMIKRKISPNVVTFSV--LIDSFVKEGKLREADQLLKEMMQRGIAPNTI 369

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            YN +I+  C+     +A  +++ M   G  C PD+ T+ ILI+ YCK            
Sbjct: 370 TYNSLIDGFCKENRLEEAIQMVDLMISKG--CDPDIMTFNILINGYCKAN---------- 417

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            RI +   LFR M  +G + + V YN L+ G C++ ++E A +LF +M  +   P+ V+Y
Sbjct: 418 -RIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSY 476

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQ----NLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
              +       E++KA+E+  K++     L+ G+     Y  IIH +C A +V +A D  
Sbjct: 477 KILLDGLCDNGELEKALEIFGKIEKSKMELDIGI-----YMIIIHGMCNASKVDDAWDLF 531

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
             L   G       Y ++   L   +  S  D   RK   +G
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 105/233 (45%), Gaps = 17/233 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + + N +    +  ++MS RG   +  T +   L++   + G +  A   F  M   R R
Sbjct: 413 YCKANRIDDGLELFREMSLRG--VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVR 470

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+ +Y ++++ LC  G   KA  +  ++E    +   D+  Y I+I   C         
Sbjct: 471 PDIVSYKILLDGLCDNGELEKALEIFGKIEKS--KMELDIGIYMIIIHGMCNAS------ 522

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ +A  LF  +  KG   D  AYN +I   C+   + +A  LF  M ++G  P+
Sbjct: 523 -----KVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPD 577

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
            +TYN  IR +   ++   A E++ +M+  + G P   S   ++  +  +G +
Sbjct: 578 ELTYNILIRAHLGDDDATTAAELIEEMK--SSGFPADVSTVKMVINMLSSGEL 628



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 113/269 (42%), Gaps = 43/269 (15%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++A+  F  M Q R  P V  +N + +A+ +   +     L +QME  G      +YT +
Sbjct: 70  DDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGI--AHSIYTLS 127

Query: 246 ILISSYCKYGMQTGCRK------------------------------AIRRRIWEANHLF 275
           I+I+ +C+      CRK                               +  R+ EA  L 
Sbjct: 128 IMINCFCR------CRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELV 181

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             M+  G  P ++  N L++G C   ++  A+ L D M + G  PN VTY   +      
Sbjct: 182 DRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKS 241

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
            +   A+E++RKM+  N  +  +  Y+ II  LC+ G +  A +   E+   G      T
Sbjct: 242 GQTALAMELLRKMEERNIKLD-AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIT 300

Query: 396 YKLV----CDALNAAEEPSLLDDGLRKRI 420
           Y  +    C+A    +   LL D ++++I
Sbjct: 301 YNTLIGGFCNAGRWDDGAKLLRDMIKRKI 329


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 136/271 (50%), Gaps = 24/271 (8%)

Query: 155 LKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           L +M R G    LVT ++   LI  L   G   EA+     M+     PD   YN +I+ 
Sbjct: 112 LDEMERSGFAANLVTYNT---LINGLSSAGRSGEAVLV---MQGMTTTPDTQTYNAIIHG 165

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+ G  ++A   LE+M+     C PD +TY+ILI+  CK              + +A+ 
Sbjct: 166 FCKSGEIDRAYGFLEEMKQRA-GCSPDTFTYSILINGLCK-----------SSNLRKADE 213

Query: 274 LFRLMLF-KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
           L + M+  K     VVA+N L+DG CK   ++RA EL   M + GC P+ VTY++ I   
Sbjct: 214 LLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGL 273

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
               ++DK   ++ KM  ++ G  P   +YT ++  LC+AG+++EA   +  +++ G  P
Sbjct: 274 CRCGDVDKGFALLEKM--VSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTP 331

Query: 392 REYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
              TY LV D L   ++  + +D L   IRD
Sbjct: 332 NAVTYSLVFDGLCKIDKLDMAND-LLTSIRD 361



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 19/220 (8%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMEL-PGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           D Y Y V++ A C  G    A  LL +ME  PG    P +Y +   + + CK G      
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNF--FVHALCKSG------ 68

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  + + M      PDVV +N LI G CK  R++ A ++ D+M + G   N
Sbjct: 69  -----KVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAAN 123

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VTYN+ I   S      +A+ +M+ M       P + +Y  IIH  C++G +  A  FL
Sbjct: 124 LVTYNTLINGLSSAGRSGEAVLVMQGMTT----TPDTQTYNAIIHGFCKSGEIDRAYGFL 179

Query: 382 AELVD-GGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
            E+    G  P  +TY ++ + L  +      D+ L++ I
Sbjct: 180 EEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 13/135 (9%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M +  C PDV  Y+ +I+ LCR G+ +K   LLE+M   G  C PDV TYT+L++  CK 
Sbjct: 254 MLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG--CKPDVVTYTVLVTGLCKA 311

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           ++ EA  L + ML  G  P+ V Y+ + DG CK  +++ A +L   + 
Sbjct: 312 G-----------KMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIR 360

Query: 315 KKGCIPNRVTYNSFI 329
            KG + + V + + +
Sbjct: 361 DKGRVTDVVAFETLL 375


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 136/271 (50%), Gaps = 24/271 (8%)

Query: 155 LKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           L +M R G    LVT ++   LI  L   G   EA+     M+     PD   YN +I+ 
Sbjct: 112 LDEMERSGFAANLVTYNT---LINGLSSAGRSGEAVLV---MQGMTTTPDTQTYNAIIHG 165

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+ G  ++A   LE+M+     C PD +TY+ILI+  CK              + +A+ 
Sbjct: 166 FCKSGEIDRAYGFLEEMKQRA-GCSPDTFTYSILINGLCK-----------SSNLRKADE 213

Query: 274 LFRLMLF-KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
           L + M+  K     VVA+N L+DG CK   ++RA EL   M + GC P+ VTY++ I   
Sbjct: 214 LLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGL 273

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
               ++DK   ++ KM  ++ G  P   +YT ++  LC+AG+++EA   +  +++ G  P
Sbjct: 274 CRCGDVDKGFALLEKM--VSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTP 331

Query: 392 REYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
              TY LV D L   ++  + +D L   IRD
Sbjct: 332 NAVTYSLVFDGLCKIDKLDMAND-LLTSIRD 361



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 19/220 (8%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMEL-PGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           D Y Y V++ A C  G    A  LL +ME  PG    P +Y +   + + CK G      
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNF--FVHALCKSG------ 68

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  + + M      PDVV +N LI G CK  R++ A ++ D+M + G   N
Sbjct: 69  -----KVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAAN 123

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VTYN+ I   S      +A+ +M+ M       P + +Y  IIH  C++G +  A  FL
Sbjct: 124 LVTYNTLINGLSSAGRSGEAVLVMQGMTT----TPDTQTYNAIIHGFCKSGEIDRAYGFL 179

Query: 382 AELVD-GGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
            E+    G  P  +TY ++ + L  +      D+ L++ I
Sbjct: 180 EEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 13/135 (9%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M +  C PDV  Y+ +I+ LCR G+ +K   LLE+M   G  C PDV TYT+L++  CK 
Sbjct: 254 MLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG--CKPDVVTYTVLVTGLCKA 311

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           ++ EA  L + ML  G  P+ V Y+ + DG CK  +++ A +L   + 
Sbjct: 312 G-----------KMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIR 360

Query: 315 KKGCIPNRVTYNSFI 329
            KG I + V + + +
Sbjct: 361 DKGRITDVVAFEALL 375


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 133/276 (48%), Gaps = 32/276 (11%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           L   ++D S R N  +V  S++   I  L ++ LVNEA   +  M      P+V  YN +
Sbjct: 137 LLRMIEDRSTRPN--VVMYSAI---IDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTL 191

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----------MQTGC 260
           I A C  G    A  LL +M L      PDVYT++ILI + CK G          +Q G 
Sbjct: 192 ICAFCLAGQLMGAFSLLHEMILKNIN--PDVYTFSILIDALCKEGKNAKQIFHAMVQMGV 249

Query: 261 RKAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
              +             +R+ EA +L R ML K  VPD V YN LIDG CK+ RI  AL 
Sbjct: 250 NPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALN 309

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
           L ++M+ +G   + VTY S +        +DKA  +  KM+    G+ PT  +YT +I  
Sbjct: 310 LMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMK--ERGIQPTMYTYTALIDG 367

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           LC+ GR+  A++    L+  G     +TY ++   L
Sbjct: 368 LCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGL 403



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 85/180 (47%), Gaps = 13/180 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI  L + G +  AL     M       DV  Y  +++ALC+  N +KA  L  
Sbjct: 288 TVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFM 347

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M+  G +  P +YTYT LI   CK G           R+  A  LF+ +L KG   DV 
Sbjct: 348 KMKERGIQ--PTMYTYTALIDGLCKGG-----------RLKNAQELFQHLLVKGCCIDVW 394

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  +I G CK    + AL +   M   GCIPN VT+   IR     +E DKA +++ +M
Sbjct: 395 TYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEM 454



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 129/278 (46%), Gaps = 27/278 (9%)

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           K M  +G  + + T S+  LI      G +  + +   ++ +    P+   +  ++  LC
Sbjct: 34  KQMDVKGIEQNLVTLSI--LINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLC 91

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
             G   K     +++    F+   +  +Y  L++  CK G +T C  AI+        L 
Sbjct: 92  LKGEVKKLLHFHDKVVAQAFQ--TNQVSYGTLLNGLCKTG-ETRC--AIK--------LL 138

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
           R++  +   P+VV Y+ +IDG CK   +  A +L+ +M+ +   PN +TYN+ I  + + 
Sbjct: 139 RMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLA 198

Query: 336 NEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
            ++  A  ++ +M  +N+N   P   +++ +I ALC+ G+   A+     +V  G  P  
Sbjct: 199 GQLMGAFSLLHEMILKNIN---PDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNV 253

Query: 394 YTYKL----VCDALNAAEEPSLLDDGLRKR-IRDGIEY 426
           Y+Y +    +C      E  +LL + L K  + D + Y
Sbjct: 254 YSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTY 291



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L + M  KG   ++V  + LI+  C   ++  +  L   + K G  PN +T+ + ++   
Sbjct: 32  LSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGLC 91

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
           +  E+ K +    K+  +     T+  SY  +++ LC+ G    A   L  + D  + P 
Sbjct: 92  LKGEVKKLLHFHDKV--VAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPN 149

Query: 393 EYTYKLVCDAL 403
              Y  + D L
Sbjct: 150 VVMYSAIIDGL 160


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 114/214 (53%), Gaps = 16/214 (7%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           F  M Q +  P+V+ YN++I   C  GN + A    ++ME  G  C P+V TY  LI  Y
Sbjct: 193 FKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKG--CLPNVVTYNTLIDGY 250

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK            R+I +   L R M  KG  P++++YN +I+G C+  R++    +  
Sbjct: 251 CKL-----------RKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLT 299

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCE 370
           +MNK+G   + VTYN+ I+ Y       +A+ M  +M  L HG+ P+  +YT +IH++C+
Sbjct: 300 EMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM--LRHGLSPSVITYTSLIHSMCK 357

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           AG +  A +FL ++   G  P E TY  + D  +
Sbjct: 358 AGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFS 391



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 133/260 (51%), Gaps = 18/260 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R   +K +   L +M++RG    +   +   LIK   +EG  ++AL     M +    P 
Sbjct: 287 REGRMKEISFVLTEMNKRGYS--LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPS 344

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V  Y  +I+++C+ GN N+A   L+QM + G  CP +  TYT L+  + + G        
Sbjct: 345 VITYTSLIHSMCKAGNMNRATEFLDQMRVRGL-CPNE-RTYTTLVDGFSQKGYMN----- 397

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
                 EA  + + M+  GF P VV YN LI+G C   ++  A+ + +DM +KG  P+ V
Sbjct: 398 ------EAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVV 451

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           +Y++ +  +    ++D+A+ + RKM  +  G+ P + +Y+ +I   CE  R  EA D   
Sbjct: 452 SYSTVLSGFCRSYDVDEALRVKRKM--VAKGIKPDTITYSSLIQGFCEQRRTKEACDLFD 509

Query: 383 ELVDGGSVPREYTYKLVCDA 402
           E++  G  P E+TY  + +A
Sbjct: 510 EMLRVGLPPDEFTYTALINA 529



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 121/254 (47%), Gaps = 18/254 (7%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  N+    +FL  M  RG        + T L+    ++G +NEA      M      P 
Sbjct: 357 KAGNMNRATEFLDQMRVRG--LCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPS 414

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V  YN +IN  C  G    A  +LE M+  G    PDV +Y+ ++S +C+          
Sbjct: 415 VVTYNALINGHCIAGKMVDAIAVLEDMKEKGL--TPDVVSYSTVLSGFCR---------- 462

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + EA  + R M+ KG  PD + Y+ LI G C+  R + A +LFD+M + G  P+  
Sbjct: 463 -SYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEF 521

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           TY + I  Y +  ++ KAI++  +M  +  GV P   +Y+ +I+ L +  R  EA+  L 
Sbjct: 522 TYTALINAYCMEGDLQKAIQLHNEM--VEKGVLPDVVTYSVLINGLNKQARTREAKRLLL 579

Query: 383 ELVDGGSVPREYTY 396
           +L    SVP + TY
Sbjct: 580 KLFYEESVPSDVTY 593



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 20/228 (8%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P++ +YNVVIN LCR G   +  F+L +M   G+    D  TY  LI  YCK G     
Sbjct: 272 EPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSL--DEVTYNTLIKGYCKEG----- 324

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                    +A  +   ML  G  P V+ Y  LI   CK   + RA E  D M  +G  P
Sbjct: 325 ------NFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCP 378

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N  TY + +  +S    +++A  ++++M + N   P+  +Y  +I+  C AG++++A   
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLKEMID-NGFSPSVVTYNALINGHCIAGKMVDAIAV 437

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL---RKRIRDGIE 425
           L ++ + G  P   +Y  V      + +   +D+ L   RK +  GI+
Sbjct: 438 LEDMKEKGLTPDVVSYSTVLSGFCRSYD---VDEALRVKRKMVAKGIK 482



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 115/244 (47%), Gaps = 18/244 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+     G ++ AL  F RM++  C P+V  YN +I+  C++   +    LL  M L G
Sbjct: 211 LIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKG 270

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P++ +Y ++I+  C+ G           R+ E + +   M  +G+  D V YN LI
Sbjct: 271 LE--PNLISYNVVINGLCREG-----------RMKEISFVLTEMNKRGYSLDEVTYNTLI 317

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G CK     +AL +  +M + G  P+ +TY S I        +++A E + +M+ +   
Sbjct: 318 KGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMR-VRGL 376

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPS 410
            P   +YT ++    + G + EA   L E++D G  P   TY  +    C A    +  +
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIA 436

Query: 411 LLDD 414
           +L+D
Sbjct: 437 VLED 440



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 13/197 (6%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C      +++V+ +  R+   +KA  ++   +  GF   P V +Y  ++ +  +      
Sbjct: 130 CNSTSSVFDLVVKSYSRLCLIDKALSIVHLSQAHGFM--PGVLSYNAVLDATIRS----- 182

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                +R I  A ++F+ ML     P+V  YN LI G C    ++ AL  FD M KKGC+
Sbjct: 183 -----KRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCL 237

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN VTYN+ I  Y  + +ID   E++R M  L    P   SY  +I+ LC  GR+ E   
Sbjct: 238 PNVVTYNTLIDGYCKLRKIDDGFELLRSMA-LKGLEPNLISYNVVINGLCREGRMKEISF 296

Query: 380 FLAELVDGGSVPREYTY 396
            L E+   G    E TY
Sbjct: 297 VLTEMNKRGYSLDEVTY 313



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 99/236 (41%), Gaps = 33/236 (13%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI     EG + +A+     M +    PDV  Y+V+IN L +     +A+ LL ++  
Sbjct: 524 TALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFY 583

Query: 233 PGFRCPPDVYTYTI--------------LISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
                P DV  +T+              LI  +C  GM T           EA+ +F  M
Sbjct: 584 EE-SVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMT-----------EADQVFESM 631

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY---SVV 335
           L K   PD  AYN +I G C+   I +A  L+ +M K G + + VT  + ++       V
Sbjct: 632 LEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKV 691

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           NE++  I  + +   L+     +     I H     G +    D LAE+   G +P
Sbjct: 692 NELNSVIANVLRSCELSEA-EQAKVLVEINH---REGNMDVVLDVLAEMAKDGFLP 743



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 13/151 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           SV  LIK    +G++ EA   F  M +   +PD  AYNV+I+  CR G+  KA  L ++M
Sbjct: 607 SVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEM 666

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              GF        +T+ + +  K   + G       ++ E N +   +L    + +    
Sbjct: 667 VKSGF------LLHTVTVIALVKTLHKEG-------KVNELNSVIANVLRSCELSEAEQA 713

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             L++   +   ++  L++  +M K G +PN
Sbjct: 714 KVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 14/217 (6%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A   F  M +    P+VY YN++I   C  GN         +ME  G  C P+V TY  +
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNG--CLPNVVTYNTI 244

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I +YCK            R+I EA  L RLM  KG  P++++YN +I+G C+  +++   
Sbjct: 245 IDAYCKL-----------RKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETS 293

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           E+ ++M+K+  +P+RVT+N+ I  Y  V    +A+ +  +M   N   P   +YT +I++
Sbjct: 294 EILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVK-NGLSPNVVTYTTLINS 352

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           +C+AG +  A +FL ++ D G  P   TY  + D  +
Sbjct: 353 MCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFS 389



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 127/273 (46%), Gaps = 24/273 (8%)

Query: 144 RGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +  N+    +FL  M  RG   NG   TT     LI    ++G + +A      M +   
Sbjct: 355 KAGNLNRAMEFLDQMRDRGLHPNGRTYTT-----LIDGFSQQGFLKQAYQIMKEMVENGF 409

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P +  YN +IN  C +G    A  LL++M   GF   PDV +Y+ +IS +C+       
Sbjct: 410 TPTIITYNALINGHCILGRMEDASGLLQEMIERGF--IPDVVSYSTIISGFCR------- 460

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                + + +A  L   M+ KG  PDV  Y+ LI G CK  R+    +LF +M   G  P
Sbjct: 461 ----NQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPP 516

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
           + VTY S I  Y +  ++DKA+ +  +M  +  G  P   +Y  +I+   +  R  EA+ 
Sbjct: 517 DEVTYTSLINAYCIEGDLDKALRLHDEM--IQKGFSPDIVTYNVLINGFNKQSRTKEAKR 574

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
            L +L+   SVP E TY  + D  N  E  S L
Sbjct: 575 LLLKLLYEESVPNEITYNTLIDNCNNLEFKSAL 607



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 117/258 (45%), Gaps = 16/258 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F    N++    F  +M R  NG L    +   +I    +   + EA      M      
Sbjct: 213 FCTAGNLEMGLXFFGEMER--NGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLN 270

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++ +YNVVIN LCR G   +   +LE+M     R  PD  T+  LI+ YC  G      
Sbjct: 271 PNLISYNVVINGLCREGQMKETSEILEEM--SKRRYVPDRVTFNTLINGYCNVG------ 322

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                   +A  L   M+  G  P+VV Y  LI+  CK   + RA+E  D M  +G  PN
Sbjct: 323 -----NFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPN 377

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TY + I  +S    + +A ++M++M   N   PT  +Y  +I+  C  GR+ +A   L
Sbjct: 378 GRTYTTLIDGFSQQGFLKQAYQIMKEMVE-NGFTPTIITYNALINGHCILGRMEDASGLL 436

Query: 382 AELVDGGSVPREYTYKLV 399
            E+++ G +P   +Y  +
Sbjct: 437 QEMIERGFIPDVVSYSTI 454



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 122/257 (47%), Gaps = 18/257 (7%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           +VK      K+M   G    V T ++  LI+     G +   L  F  M++  C P+V  
Sbjct: 183 SVKIAEGIFKEMVESGVSPNVYTYNI--LIRGFCTAGNLEMGLXFFGEMERNGCLPNVVT 240

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN +I+A C++    +A  LL  M L G    P++ +Y ++I+  C+ G           
Sbjct: 241 YNTIIDAYCKLRKIGEAFKLLRLMALKGLN--PNLISYNVVINGLCREG----------- 287

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++ E + +   M  + +VPD V +N LI+G C      +AL L  +M K G  PN VTY 
Sbjct: 288 QMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYT 347

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           + I        +++A+E + +M+  + G+ P   +YT +I    + G + +A   + E+V
Sbjct: 348 TLINSMCKAGNLNRAMEFLDQMR--DRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMV 405

Query: 386 DGGSVPREYTYKLVCDA 402
           + G  P   TY  + + 
Sbjct: 406 ENGFTPTIITYNALING 422



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 109/256 (42%), Gaps = 33/256 (12%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F R   ++  +    +M  +G    V T S   LI+ L ++  + E    F  M      
Sbjct: 458 FCRNQELEKAFQLKVEMVAKGISPDVATYS--SLIQGLCKQRRLGEVCDLFQEMLSLGLP 515

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   Y  +INA C  G+ +KA  L ++M   GF   PD+ TY +LI+ + K        
Sbjct: 516 PDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGF--SPDIVTYNVLINGFNK-------- 565

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC---------------CKTYRIERA 306
              + R  EA  L   +L++  VP+ + YN LID C               C    +  A
Sbjct: 566 ---QSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEA 622

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPII 365
             + + M +KG   N   YN  I  +S V  I+KA  + ++M  L+ G  P S +   + 
Sbjct: 623 DRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEM--LHSGFAPHSVTIMALA 680

Query: 366 HALCEAGRVLEARDFL 381
            +L   G+ +E    L
Sbjct: 681 KSLYHEGKEVELNQLL 696



 Score = 41.6 bits (96), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 2/114 (1%)

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           ++ ++  C +   I +AL + +     G +P  ++YN+ +       +  K  E + K +
Sbjct: 135 FDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFK-E 193

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +  GV P   +Y  +I   C AG +     F  E+   G +P   TY  + DA
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDA 247


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 126/259 (48%), Gaps = 27/259 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++KV+ + G    A+    +M++ + + D   Y+++I+ LC+ G+ + A  L  +ME+ G
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277

Query: 235 FRCPPDVYTYTILISSYCKYGMQTG----CRKAIRRRIW--------------------E 270
           F+   D+  YT LI  +C  G         R  I+R+I                     E
Sbjct: 278 FK--ADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 335

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L + M+ +G  PD V Y  LIDG CK  ++++A  + D M  KGC PN  T+N  I 
Sbjct: 336 AEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILIN 395

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            Y   N ID  +E+ RKM +L   V  + +Y  +I   CE G++  A++   E+V     
Sbjct: 396 GYCKANLIDDGLELFRKM-SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVR 454

Query: 391 PREYTYKLVCDALNAAEEP 409
           P   +YK++ D L    EP
Sbjct: 455 PDIVSYKILLDGLCDNGEP 473



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 127/288 (44%), Gaps = 28/288 (9%)

Query: 144 RGNNVKGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           RG    G WD     L+DM +R     V   S   LI    +EG + EA      M Q  
Sbjct: 290 RGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSA--LIDCFVKEGKLREAEELHKEMIQRG 347

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             PD   Y  +I+  C+    +KA  +L+ M   G  C P++ T+ ILI+ YCK  +   
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG--CGPNIRTFNILINGYCKANL--- 402

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   I +   LFR M  +G V D V YN LI G C+  ++E A ELF +M  +   
Sbjct: 403 --------IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVR 454

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ----NLNHGVPTSSSYTPIIHALCEAGRVL 375
           P+ V+Y   +       E +KA+E+  K++     L+ G+     Y  IIH +C A +V 
Sbjct: 455 PDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI-----YNIIIHGMCNASKVD 509

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           +A D    L   G  P   TY ++   L      S  D   RK   DG
Sbjct: 510 DAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 128/274 (46%), Gaps = 34/274 (12%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + LI  L  EG V+EAL    RM +   +P +   N ++N LC  G  + A  L++
Sbjct: 142 TVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLID 201

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE------------------ 270
           +M   GF+  P+  TY  ++   CK G QT     + R++ E                  
Sbjct: 202 RMVETGFQ--PNEVTYGPVLKVMCKSG-QTALAMELLRKMEERKIKLDAVKYSIIIDGLC 258

Query: 271 -------ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
                  A +LF  M  KGF  D++ Y  LI G C   R +   +L  DM K+   P+ V
Sbjct: 259 KDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 318

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
            +++ I  +    ++ +A E+ ++M  +  G+ P + +YT +I   C+  ++ +A   L 
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEM--IQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376

Query: 383 ELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            +V  G  P   T+ ++   +N   + +L+DDGL
Sbjct: 377 LMVSKGCGPNIRTFNIL---INGYCKANLIDDGL 407



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 19/236 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + + N +    +  + MS RG   +  T +   LI+   E G +  A   F  M   R R
Sbjct: 397 YCKANLIDDGLELFRKMSLRG--VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVR 454

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+ +Y ++++ LC  G   KA  + E++E    +   D+  Y I+I   C         
Sbjct: 455 PDIVSYKILLDGLCDNGEPEKALEIFEKIEKS--KMELDIGIYNIIIHGMCNAS------ 506

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ +A  LF  +  KG  PDV  YN +I G CK   +  A  LF  M + G  PN
Sbjct: 507 -----KVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             TYN  IR +    +  K+ +++ +++     V  S+    +  AL    R+L+A
Sbjct: 562 GCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDAST----LRFALSTLARMLKA 613



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 31/233 (13%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
            + V   WD    +  +G    V T ++  +I  L ++G ++EA   F +M++    P+ 
Sbjct: 505 ASKVDDAWDLFCSLPLKGVKPDVKTYNI--MIGGLCKKGSLSEADLLFRKMEEDGHSPNG 562

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRC--------------------PPDVYTY 244
             YN++I A    G+  K+  L+E+++  GF                       PDV+T+
Sbjct: 563 CTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTF 622

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T L+  +C     +         +++A  LF+ M   G+ P+VV YN +I G      I 
Sbjct: 623 TTLLRPFCLEENAS---------VYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMIS 673

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           +   + D M ++GC PN VT ++FI      +    AI ++RKM+N N  V T
Sbjct: 674 QVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKMENDNEDVTT 726



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 114/286 (39%), Gaps = 29/286 (10%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V AR      + D  K M  +G    + T S+  +I        ++ A +   ++ +   
Sbjct: 81  VVARTKQYDLVLDLCKQMELKGIAHNLYTLSI--MINCCCRCRKLSLAFSAMGKIIKLGY 138

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD   ++ +IN LC  G  ++A  L+++M   G +  P + T   L++  C  G  +  
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK--PTLITLNALVNGLCLNGKVSDA 196

Query: 261 RKAIRRRIWE------------------------ANHLFRLMLFKGFVPDVVAYNCLIDG 296
              I R +                          A  L R M  +    D V Y+ +IDG
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            CK   ++ A  LF++M  KG   + + Y + IR +      D   +++R M       P
Sbjct: 257 LCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK-RKITP 315

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              +++ +I    + G++ EA +   E++  G  P   TY  + D 
Sbjct: 316 DVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDG 361



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L + M  KG   ++   + +I+ CC+  ++  A      + K G  P+ VT+++ I    
Sbjct: 94  LCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLC 153

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           +   + +A+E++ +M  + H  PT  +   +++ LC  G+V +A   +  +V+ G  P E
Sbjct: 154 LEGRVSEALELVDRMVEMGHK-PTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNE 212

Query: 394 YTY----KLVCDALNAAEEPSLLDDGLRKRIR-DGIEY 426
            TY    K++C +   A    LL     ++I+ D ++Y
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKY 250


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 164/403 (40%), Gaps = 63/403 (15%)

Query: 26  VPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKK 85
           V FD+ LA        P  +  +   L+  P+   +  +  G Q GFRH T         
Sbjct: 62  VLFDSALA--------PIWVSKILLGLREDPKLALKFFKWAGSQVGFRHTT--------- 104

Query: 86  EAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARG 145
           E+Y I  + LV     Y D                      D     +    M + F   
Sbjct: 105 ESYCIIVH-LVFRARMYTDAH--------------------DTVKEVIMNSRMDMGFPVC 143

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N    LW   +++   G+G          L  V  E GL+ EA   F RM+ FR  P   
Sbjct: 144 NIFDMLWS-TRNICVSGSGVF------DVLFSVFVELGLLEEANECFSRMRNFRTLPKAR 196

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           + N +++ L + GN    R     M   G    P V+TY ++I   CK G     R+   
Sbjct: 197 SCNFLLHRLSKSGNGQLVRKFFNDMIGAGI--APSVFTYNVMIDYLCKEGDLENSRR--- 251

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
                   LF  M   G  PDVV YN LIDG  K   +E    LF++M   GC+P+ +TY
Sbjct: 252 --------LFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITY 303

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           N  I  Y    ++ +A E   +M+N N   P   +Y+ +I A C+ G +  A   L ++ 
Sbjct: 304 NGLINCYCKFEKMPRAFEYFSEMKN-NGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMR 362

Query: 386 DGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIRDGI 424
             G +P E+TY  +    C A N  E   LL+D L+  ++  I
Sbjct: 363 RTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNI 405



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 117/270 (43%), Gaps = 30/270 (11%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           ++VT +S   LI   G+ G + E  + F  MK   C PD+  YN +IN  C+     +A 
Sbjct: 264 DVVTYNS---LIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAF 320

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI---RR--------------- 266
               +M+  G +  P+V TY+ LI ++CK GM  G  K +   RR               
Sbjct: 321 EYFSEMKNNGLK--PNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLID 378

Query: 267 ------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  + EA  L   ML  G   ++V Y  L+DG CK  R+  A E+F  M K G  P
Sbjct: 379 ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP 438

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N+  Y + +  Y     ++ A++++++M   N   P    Y  II   C   ++ E +  
Sbjct: 439 NQQVYTALVHGYIKAERMEDAMKILKQMTECNIK-PDLILYGSIIWGHCSQRKLEETKLI 497

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPS 410
           L E+   G          + DA   A + S
Sbjct: 498 LEEMKSRGISANPVISTTIIDAYFKAGKSS 527



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 126/275 (45%), Gaps = 18/275 (6%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +++  +M   G    V T S   LI    +EG++  A+     M++    P+ + Y  +I
Sbjct: 320 FEYFSEMKNNGLKPNVVTYST--LIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLI 377

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           +A C+ GN  +A  LL  M   G +   ++ TYT L+   CK G           R+ EA
Sbjct: 378 DANCKAGNLTEAWKLLNDMLQAGVKL--NIVTYTALLDGLCKAG-----------RMIEA 424

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +FR ML  G  P+   Y  L+ G  K  R+E A+++   M +    P+ + Y S I  
Sbjct: 425 EEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 484

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSY-TPIIHALCEAGRVLEARDFLAELVDGGSV 390
           +    ++++   ++ +M+  + G+  +    T II A  +AG+  +A +F  E+ D G  
Sbjct: 485 HCSQRKLEETKLILEEMK--SRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVE 542

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
               TY ++ D L  A    L  D   + +  G++
Sbjct: 543 ATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQ 577



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 95/242 (39%), Gaps = 45/242 (18%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP----- 239
           + +A+    +M +   +PD+  Y  +I   C      + + +LE+M+  G    P     
Sbjct: 456 MEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTT 515

Query: 240 --DVY--------------------------TYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             D Y                          TY +LI   C+ G+           +  A
Sbjct: 516 IIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGI-----------VELA 564

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
              F  ML  G  P+V  Y  LIDG C    IE A +LFD+M  +G  P+   + + I  
Sbjct: 565 VDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDG 624

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                 + +A+ ++ +M  L         YT ++    + G + +AR F  E+++ G +P
Sbjct: 625 NLKHGNLQEALVLISRMTELAIEFDL-HVYTSLVSGFSQCGELHQARKFFNEMIEKGILP 683

Query: 392 RE 393
            E
Sbjct: 684 EE 685



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 16/212 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F  G +   L +F ++M   G    + T  V  LI  L E G+V  A+  F RM     +
Sbjct: 521 FKAGKSSDAL-NFFQEMQDVGVEATIVTYCV--LIDGLCEAGIVELAVDYFCRMLSLGLQ 577

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V  Y  +I+ LC       A+ L ++M+  G    PD+  +T LI    K+G      
Sbjct: 578 PNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGM--TPDITAFTALIDGNLKHG------ 629

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + EA  L   M       D+  Y  L+ G  +   + +A + F++M +KG +P 
Sbjct: 630 -----NLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPE 684

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
            V     +R Y    ++D+AIE+  +M+ + +
Sbjct: 685 EVLCICLLREYYKRGQLDEAIELKNEMERMAY 716


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 128/259 (49%), Gaps = 17/259 (6%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           GN    L   LK M  +G    V   +   +I  L ++ LV EA+  F  M +    PDV
Sbjct: 59  GNTTMAL-QLLKKMEEKGCKPNVVAYNT--IIDSLCKDRLVTEAMDFFSEMVKEGIPPDV 115

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           + Y+ +++  C +G  N+A  L +QM        P+  T+TILI   CK           
Sbjct: 116 FTYSSILHGFCNLGRVNEATSLFKQM--VERNVIPNKVTFTILIDGLCK----------- 162

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           +R I EA  +F  M  KG  PDV  YN L+DG C   +++ A +LF+ M++KGC PN  +
Sbjct: 163 KRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRS 222

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YN  I  +     ID+A  ++ +M +     P   +Y+ ++   C+ GR  EA++ L E+
Sbjct: 223 YNILINGHCKSGRIDEAKGLLAEMSH-KSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEM 281

Query: 385 VDGGSVPREYTYKLVCDAL 403
              G +P   TY +V D L
Sbjct: 282 CSYGLLPNLITYSIVLDGL 300



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 14/233 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI  L ++ +++EA   F  M +    PDVY YN +++  C     ++A+ L   M
Sbjct: 152 TFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIM 211

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  G  C P+V +Y ILI+ +CK G           RI EA  L   M  K   PD+  Y
Sbjct: 212 DRKG--CAPNVRSYNILINGHCKSG-----------RIDEAKGLLAEMSHKSLTPDIFTY 258

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + L+ G C+  R + A EL  +M   G +PN +TY+  +        +D+A E+++ MQ 
Sbjct: 259 STLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQE 318

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +   P    YT +I  +C  G++  AR+  + L   G  P   TY ++   L
Sbjct: 319 -SKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGL 370



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 14/166 (8%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P + T+  L+S  C            + +I +A  LF  M+  G  PDV+ Y+ +I+G C
Sbjct: 8   PTLVTFNTLLSGLCS-----------KAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLC 56

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K      AL+L   M +KGC PN V YN+ I        + +A++   +M  +  G+P  
Sbjct: 57  KMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEM--VKEGIPPD 114

Query: 359 S-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +Y+ I+H  C  GRV EA     ++V+   +P + T+ ++ D L
Sbjct: 115 VFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGL 160



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 20/218 (9%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
            R +  KGL   L +MS +     + T S   L++   + G   EA      M  +   P
Sbjct: 234 GRIDEAKGL---LAEMSHKSLTPDIFTYST--LMRGFCQVGRPQEAQELLKEMCSYGLLP 288

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           ++  Y++V++ LC+ G+ ++A  LL+ M+    +  P+++ YTILI   C +G       
Sbjct: 289 NLITYSIVLDGLCKHGHLDEAFELLKAMQES--KIEPNIFIYTILIEGMCTFG------- 339

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               ++  A  LF  +  KG  P VV Y  +I G  K      A ELF +M   GC+PN 
Sbjct: 340 ----KLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNS 395

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            TYN  I+ +    +   A+ ++ +M  +  G    SS
Sbjct: 396 CTYNVIIQGFLRNGDTPNAVRLIEEM--VGKGFSADSS 431



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 6/147 (4%)

Query: 279 LFK-GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           +FK G  P +V +N L+ G C   +I  A++LFD+M K G  P+ +TY++ I     +  
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
              A+++++KM+      P   +Y  II +LC+   V EA DF +E+V  G  P  +TY 
Sbjct: 61  TTMALQLLKKMEE-KGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYS 119

Query: 398 LV----CDALNAAEEPSLLDDGLRKRI 420
            +    C+     E  SL    + + +
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNV 146



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 15/173 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + LK+M   G    + T S+  ++  L + G ++EA      M++ +  P+++ Y ++I 
Sbjct: 276 ELLKEMCSYGLLPNLITYSI--VLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIE 333

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            +C  G    AR L   + + G +  P V TYT++IS   K G+             EA 
Sbjct: 334 GMCTFGKLEAARELFSNLFVKGIQ--PTVVTYTVMISGLLKGGLSN-----------EAC 380

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            LFR M   G +P+   YN +I G  +      A+ L ++M  KG   +  T+
Sbjct: 381 ELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTF 433


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 125/258 (48%), Gaps = 21/258 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + R  +V   +   ++M  R         S   LI  L E G ++EA++ F RMK   C 
Sbjct: 237 YCRSKDVDSAFRVFEEMPNRNE------VSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCY 290

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+VY Y  +I  LCR  N +KA  LL++M        PD+ TY  LI+  C+ G      
Sbjct: 291 PNVYTYTALIKGLCR-KNVHKAMGLLDEMLERNLV--PDLITYNSLIAGQCRAG------ 341

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 +  A  L  LM  +G VPD   Y C ID  CK+ R+E A  LFD + ++G   N
Sbjct: 342 -----HLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSAN 396

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            + Y+  I  Y  V ++D+A  +  KM + N   P + ++  +IH LC AG + EA    
Sbjct: 397 VIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCS-PNAYTFNALIHGLCSAGNLKEALSLF 455

Query: 382 AELVDGGSVPREYTYKLV 399
            ++V  G  P  YT+ ++
Sbjct: 456 DQMVKMGLKPTVYTFNIL 473



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 111/251 (44%), Gaps = 18/251 (7%)

Query: 147 NVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           NV      L +M  R    +L+T +S   LI      G ++ A      MK+    PD  
Sbjct: 307 NVHKAMGLLDEMLERNLVPDLITYNS---LIAGQCRAGHLDSAYRLLSLMKERGLVPDQR 363

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            Y   I+ LC+     +AR L + +   G     +V  Y++LI  YCK G          
Sbjct: 364 TYGCFIDFLCKSNRVEEARRLFDSLTEEGVS--ANVIMYSVLIDGYCKVG---------- 411

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            ++ EA  LF  ML K   P+   +N LI G C    ++ AL LFD M K G  P   T+
Sbjct: 412 -KVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTF 470

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           N  I       + D A + ++KM +     P + +Y   I   C AG+V EA D + ++ 
Sbjct: 471 NILIGRMLKQGDFDDAHKCLQKMMSSGEK-PVARTYNAFIEVYCSAGKVQEAEDMMVQMK 529

Query: 386 DGGSVPREYTY 396
           + G  P ++TY
Sbjct: 530 EEGVPPDDFTY 540



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 127/272 (46%), Gaps = 25/272 (9%)

Query: 154 FLKDMSRRGNGELVTTSSVTC---LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           F+ D+ R+ + + +T  S+ C   L+ +L   GLV+E    +  M +     D+Y +N++
Sbjct: 139 FVSDICRKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLM 198

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           IN  C++G   +A+  + +M   G    PD +T T  I  YC+            + +  
Sbjct: 199 INVYCKMGFVKEAKQFMCKMIQAGLS--PDYFTSTSFILGYCR-----------SKDVDS 245

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  +F  M  +    + V+YN LI G C+  RI+ A+ LF  M    C PN  TY + I+
Sbjct: 246 AFRVFEEMPNR----NEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIK 301

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                N + KA+ ++ +M   N  VP   +Y  +I   C AG +  A   L+ + + G V
Sbjct: 302 GLCRKN-VHKAMGLLDEMLERNL-VPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLV 359

Query: 391 PREYTYKLVCDAL---NAAEEPSLLDDGLRKR 419
           P + TY    D L   N  EE   L D L + 
Sbjct: 360 PDQRTYGCFIDFLCKSNRVEEARRLFDSLTEE 391



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 25/242 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+ A   F  M     R +V +YN +I+ LC  G  ++A  L  +M+     C P+VYTY
Sbjct: 243 VDSAFRVFEEMPN---RNEV-SYNQLIHGLCEAGRIDEAVSLFVRMKDDC--CYPNVYTY 296

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T LI   C            R+ + +A  L   ML +  VPD++ YN LI G C+   ++
Sbjct: 297 TALIKGLC------------RKNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLD 344

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTP 363
            A  L   M ++G +P++ TY  FI +    N +++A  +   +     GV  +   Y+ 
Sbjct: 345 SAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTE--EGVSANVIMYSV 402

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKR 419
           +I   C+ G+V EA     +++     P  YT+      +C A N  E  SL D  ++  
Sbjct: 403 LIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMG 462

Query: 420 IR 421
           ++
Sbjct: 463 LK 464



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 18/260 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             + N V+        ++  G    V   SV  LI    + G V+EA   F +M    C 
Sbjct: 372 LCKSNRVEEARRLFDSLTEEGVSANVIMYSV--LIDGYCKVGKVDEAGCLFEKMLSKNCS 429

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+ Y +N +I+ LC  GN  +A  L +QM   G +  P VYT+ ILI    K G      
Sbjct: 430 PNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLK--PTVYTFNILIGRMLKQGDFDDAH 487

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
           K +++           M+  G  P    YN  I+  C   +++ A ++   M ++G  P+
Sbjct: 488 KCLQK-----------MMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPD 536

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE--ARD 379
             TY S I+ Y  +     A ++++ M + +   P+  ++  +I  L +   V+E     
Sbjct: 537 DFTYTSLIKAYGKLGLTYSAFDVLKSMFDAD-CEPSHHTFLSLIKQLFDKRYVVEKSGET 595

Query: 380 FLAELVDGGSVPREYTYKLV 399
            +  + + G VP    +K++
Sbjct: 596 GVESVSNFGDVPGSNMWKMM 615



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 113/291 (38%), Gaps = 36/291 (12%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
                N+K        M + G    V T ++  LI  + ++G  ++A     +M     +
Sbjct: 442 LCSAGNLKEALSLFDQMVKMGLKPTVYTFNI--LIGRMLKQGDFDDAHKCLQKMMSSGEK 499

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P    YN  I   C  G   +A  ++ QM+  G   PPD +TYT LI +Y K G+     
Sbjct: 500 PVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGV--PPDDFTYTSLIKAYGKLGLTYSAF 557

Query: 262 KAIRRRI---WEANHLFRLMLFKGFVP--------------------DVVAYNCLIDGCC 298
             ++       E +H   L L K                        DV   N       
Sbjct: 558 DVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMW----- 612

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PT 357
           K    +  +ELF++M K GC P+   Y   I     V  +  A++++ +MQ    G+ P+
Sbjct: 613 KMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQ--KEGISPS 670

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAE 407
              +  +I   C+  +  EA + + +++  G  P+ E+   L+C      E
Sbjct: 671 EMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGE 721



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 9/161 (5%)

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           E N L+  ML +    D+  +N +I+  CK   ++ A +    M + G  P+  T  SFI
Sbjct: 175 EMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFI 234

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             Y    ++D A  +  +M N N       SY  +IH LCEAGR+ EA      + D   
Sbjct: 235 LGYCRSKDVDSAFRVFEEMPNRNE-----VSYNQLIHGLCEAGRIDEAVSLFVRMKDDCC 289

Query: 390 VPREYTYKLVCDAL---NAAEEPSLLDDGL-RKRIRDGIEY 426
            P  YTY  +   L   N  +   LLD+ L R  + D I Y
Sbjct: 290 YPNVYTYTALIKGLCRKNVHKAMGLLDEMLERNLVPDLITY 330



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 26/159 (16%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           F  M++  C PD   Y  +I+ +C+V N   A  LL+QM+  G    P    +  +IS  
Sbjct: 624 FEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGIS--PSEMVFNAVISCC 681

Query: 252 CK---YGMQTG----------------CRKAI-----RRRIWEANHLFRLMLFKGFVPDV 287
           CK   YG                    C+  I            N +F+ +   G+  D 
Sbjct: 682 CKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDE 741

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           +A+  LIDG  K   +E   +LF++M K GC  +  TY+
Sbjct: 742 IAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYS 780


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 140/282 (49%), Gaps = 18/282 (6%)

Query: 125 FFDFFHNEMT-CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183
           F  F  + +T C  +  + A G+  + L  F +  ++    +LV  +S   L+K L  +G
Sbjct: 247 FKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNS---LVKGLCRQG 303

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           L+  AL     M +  C PD++ YN+VIN LC++GN + A  ++    + G+   PDV+T
Sbjct: 304 LILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYL--PDVFT 361

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           +  +I  YCK           R ++  A  L   M   G  PD + YN +++G CK  + 
Sbjct: 362 FNTMIDGYCK-----------RLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKA 410

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           +   E F++M  KGC PN +TYN  I  +  +N++++A  ++ +M   +  VP + S+  
Sbjct: 411 KEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQ-DGLVPDTISFNT 469

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           +IH  C  G +  A     +L + G      T+ ++  A ++
Sbjct: 470 LIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSS 511



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 19/248 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++  L ++G + E+ A   ++ +     + +  N+ I  LC  G   +A  L+E M+   
Sbjct: 121 VLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDA-- 178

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDV TY  L+   CK             ++ EA    R M+ +G +PD   YN +I
Sbjct: 179 -YIAPDVVTYNTLMRGLCK-----------DSKVQEAAQYLRRMMNQGCIPDDFTYNTII 226

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK   ++ A EL  D   KG +P+RVTY S I       ++++A+E+  + Q  +  
Sbjct: 227 DGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLK 286

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPS 410
            P    Y  ++  LC  G +L A   + E+V+ G  P  +TY +V + L    N ++   
Sbjct: 287 -PDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAV 345

Query: 411 LLDDGLRK 418
           +++D + K
Sbjct: 346 VMNDAIVK 353



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 15/165 (9%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA     RM Q    PD  ++N +I+  CR G+ + A  L ++++  G+    D  T+
Sbjct: 445 LEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATAD--TF 502

Query: 245 TILISSYC-KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
            ILI +Y  K  MQ             A  +F  M+ KG+ PD+  Y  L+DG CK   +
Sbjct: 503 NILIGAYSSKLNMQM------------AEKIFGEMISKGYKPDLYTYRVLVDGSCKAANV 550

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           +RA     +M  KG +P+  T+   +   ++ + + +A+ ++  M
Sbjct: 551 DRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIM 595



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 103/232 (44%), Gaps = 28/232 (12%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M  F C P   AYN +++AL      ++A  +  +M   G    PD  T+T+ I S+C  
Sbjct: 1   MDLFGCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGV--APDARTHTVRIKSFCIT 58

Query: 255 GM------------QTGCRK------AIRRRI------WEANHLFRLMLFKGFVPDVVAY 290
           G             + GC         + R +      ++A HLF  ML +   PDV  +
Sbjct: 59  GRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATF 118

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N ++   C+   I  +  L   + K+G   N+ T N +IR       +++A+ ++  M  
Sbjct: 119 NNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMD- 177

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             +  P   +Y  ++  LC+  +V EA  +L  +++ G +P ++TY  + D 
Sbjct: 178 -AYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDG 228



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 98/240 (40%), Gaps = 42/240 (17%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F R  ++ G +   + +  +G     T  +   LI     +  +  A   F  M     +
Sbjct: 474 FCRNGDLDGAYLLFQKLDEKGYS--ATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYK 531

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+Y Y V+++  C+  N ++A   L +M   GF   P + T+  +++S           
Sbjct: 532 PDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFV--PSMATFGRVLNSL---------- 579

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE--LFDDMNKKGCI 319
            A+  R+ EA  +  +M+  G VP+VV      D    T + E A    L +++ KKG  
Sbjct: 580 -AMNHRVSEAVAIIHIMVRMGVVPEVV------DTILSTDKKEIAAPKILVEELMKKG-- 630

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRK-----------MQNLNHGVPTSSSYTPIIHAL 368
              ++Y +    Y V++E  +  ++ RK           M    HG+  S     I H L
Sbjct: 631 --HISYPT----YEVLHEGVRDNKLTRKARKWRLSDPDCMNTTTHGISYSLLLLQIDHIL 684


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 146/326 (44%), Gaps = 28/326 (8%)

Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           R+  K  +G+N   +F+ W  +  ++ H+  T   +            +W  +++M R  
Sbjct: 90  REVMKTDVGVNVKMQFFRWAAKKRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNP 149

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
              +VT   ++ +I++LG   ++++A+A FY++K  +C+P   AYN +I  L   G + K
Sbjct: 150 VC-VVTPMELSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEK 208

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR---------------- 266
              L  +M   G  C PD  TY+ LIS++CK G Q    + +                  
Sbjct: 209 VHELYNEMSNEG-HCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTML 267

Query: 267 --------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                    +  A  LF  M  +   PDV  Y  LI G  K  R + A   F +M ++GC
Sbjct: 268 IALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGC 327

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLEA 377
            P+ V  N+ I +      +D A+++  +M  L   +P+  +Y  II AL E+  R+ E 
Sbjct: 328 RPDTVVINNMINFLGKAGRLDDAVKLFEEMGTL-QCIPSVVTYNTIIKALFESKSRISEI 386

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
             +   +   G  P  +TY ++ D  
Sbjct: 387 SSWFERMKGSGISPSPFTYSILIDGF 412



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 129/276 (46%), Gaps = 18/276 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +F + NNV G     ++M  +     V T   T LI+ LG+ G  +EA   F+ M++  C
Sbjct: 270 LFFKLNNVHGALGLFEEMRHQYCRPDVFT--YTELIRGLGKAGRFDEAYNFFHEMRREGC 327

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           RPD    N +IN L + G  + A  L E+M     +C P V TY  +I +  +       
Sbjct: 328 RPDTVVINNMINFLGKAGRLDDAVKLFEEM--GTLQCIPSVVTYNTIIKALFES------ 379

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
               + RI E +  F  M   G  P    Y+ LIDG CKT R E+A+ L ++M++KG  P
Sbjct: 380 ----KSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPP 435

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
               Y S I         D A E+ ++++  N G  ++  Y  +I  L +AGR+ +A + 
Sbjct: 436 CPAAYCSLIDALGKAKRYDIAHELFQELKE-NCGSSSARVYAVMIKHLGKAGRLDDAVNL 494

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
             E+   G  P  Y Y  +   L  A    +LD+ L
Sbjct: 495 FDEMNKLGCTPNVYAYNALMSGLARA---GMLDEAL 527



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 15/210 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F + N  +     L++M  +G       ++   LI  LG+    + A   F  +K+    
Sbjct: 412 FCKTNRTEKAMMLLEEMDEKGFPP--CPAAYCSLIDALGKAKRYDIAHELFQELKENCGS 469

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
                Y V+I  L + G  + A  L ++M   G  C P+VY Y  L+S   + GM     
Sbjct: 470 SSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLG--CTPNVYAYNALMSGLARAGMLDEAL 527

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             +RR           M   G +PD+ +YN +++G  KT    RA+E+  +M +    P+
Sbjct: 528 TTMRR-----------MQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPD 576

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            V+YN+ +   S     ++A ++M++M  L
Sbjct: 577 AVSYNTVLGAMSHAGLFEEAAKLMKEMNVL 606



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 13/162 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +IK LG+ G +++A+  F  M +  C P+VYAYN +++ L R G  ++A   + +M+  G
Sbjct: 478 MIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHG 537

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD+ +Y I+++   K G   G  +A+         +   M      PD V+YN ++
Sbjct: 538 --CIPDINSYNIILNGLAKTG---GPHRAM--------EMLSNMKQSAIKPDAVSYNTVL 584

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
                    E A +L  +MN  G   + +TY+S +     V+
Sbjct: 585 GAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGKVD 626



 Score = 45.1 bits (105), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G +   +S   ++  L + G  + A+     MKQ   +PD  +YN V+ A+   G F +
Sbjct: 536 HGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEE 595

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           A  L+++M + GF    D+ TY+ ++ +  K
Sbjct: 596 AAKLMKEMNVLGFEY--DLITYSSILEAIGK 624


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/269 (33%), Positives = 136/269 (50%), Gaps = 27/269 (10%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           L+D S R + + VT S+   LI  L + G ++EA + F  M      P+V  YN ++N L
Sbjct: 170 LRDGSLRVSPDTVTFST---LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGL 226

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           C+     +A  ++E M   G    PDV TY++L+ ++CK             R+ EA  L
Sbjct: 227 CKADKMERAHAMIESMVDKGV--TPDVITYSVLVDAFCK-----------ASRVDEALEL 273

Query: 275 FRLMLFKG-----FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
              M  +G      VPD V +N LI G CK    E+A  LF++M  K   P+ +T+ + I
Sbjct: 274 LHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALI 333

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGG 388
                  +++ A +++  M NL  GVP +  +Y  ++H LC++GR+ EA  FL E+V  G
Sbjct: 334 DGLCKAGQVEAARDILDLMGNL--GVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSG 391

Query: 389 SVPREYTYKLVCDALNAAEEPSLLDDGLR 417
            VP   TY  +  AL  A   S  DD L+
Sbjct: 392 CVPDSITYGSLVYALCRA---SRTDDALQ 417



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 120/248 (48%), Gaps = 21/248 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY-----AYN 208
            ++ M  +G    V T SV  L+    +   V+EAL   + M    C P+V       +N
Sbjct: 238 MIESMVDKGVTPDVITYSV--LVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFN 295

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
           ++I   C+ GNF +A  L E+M     +  PDV T+  LI   CK G           ++
Sbjct: 296 ILIAGACKAGNFEQASALFEEMVAKNLQ--PDVMTFGALIDGLCKAG-----------QV 342

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
             A  +  LM   G  P+VV YN L+ G CK+ RIE A +  ++M   GC+P+ +TY S 
Sbjct: 343 EAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSL 402

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +      +  D A++++ ++++     P + +Y  ++  L ++G+  +A   L E+V  G
Sbjct: 403 VYALCRASRTDDALQLVSELKSFGWD-PDTVTYNILVDGLWKSGKTEQAITVLEEMVGKG 461

Query: 389 SVPREYTY 396
             P  +T+
Sbjct: 462 HQPDSFTF 469



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 134/295 (45%), Gaps = 32/295 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             + N++    +  +++  RG+   V T +   LI  L + G + EA      M    C 
Sbjct: 47  LCKSNDLGAGMELFEELVERGHHPDVVTYNT--LIDSLCKAGDLEEARRLHGDMSSRGCV 104

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V  Y+V+IN LC+VG  ++AR L+++M        P++ TY   +   CK  M     
Sbjct: 105 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 164

Query: 262 KAIRR--------------------------RIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           + +R                           +I EA  +F  M+  G+VP+V+ YN L++
Sbjct: 165 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 224

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL---- 351
           G CK  ++ERA  + + M  KG  P+ +TY+  +  +   + +D+A+E++  M +     
Sbjct: 225 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 284

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           N  VP   ++  +I   C+AG   +A     E+V     P   T+  + D L  A
Sbjct: 285 NVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKA 339



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 149/315 (47%), Gaps = 44/315 (13%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G+  + L  F  +M+R G    + T +   +I  L +   +   +  F  + +    PDV
Sbjct: 15  GDTARALEIFRGEMARDGVAPTIVTYNT--IINGLCKSNDLGAGMELFEELVERGHHPDV 72

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             YN +I++LC+ G+  +AR L   M   G  C P+V TY++LI+  CK G     R+ I
Sbjct: 73  VTYNTLIDSLCKAGDLEEARRLHGDMSSRG--CVPNVVTYSVLINGLCKVGRIDEARELI 130

Query: 265 RRRIWEA-NHLFRLMLFKGFV---------------------------PDVVAYNCLIDG 296
           +    ++ + L  ++ +  F+                           PD V ++ LIDG
Sbjct: 131 QEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDG 190

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV- 355
            CK  +I+ A  +FDDM   G +PN +TYN+ +      +++++A  M+  M  ++ GV 
Sbjct: 191 LCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESM--VDKGVT 248

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS-----VPREYTYKLV----CDALNAA 406
           P   +Y+ ++ A C+A RV EA + L  +   G      VP + T+ ++    C A N  
Sbjct: 249 PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFE 308

Query: 407 EEPSLLDDGLRKRIR 421
           +  +L ++ + K ++
Sbjct: 309 QASALFEEMVAKNLQ 323



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 19/218 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V  YN+V+ +LCR G+  +A  +  + E+      P + TY  +I+  CK          
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIF-RGEMARDGVAPTIVTYNTIINGLCK---------- 49

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               +     LF  ++ +G  PDVV YN LID  CK   +E A  L  DM+ +GC+PN V
Sbjct: 50  -SNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVV 108

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           TY+  I     V  ID+A E++++M   +  V P   +Y   +  LC+     EA + + 
Sbjct: 109 TYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMR 168

Query: 383 ELVDGG--SVPREYTYKLVCDAL----NAAEEPSLLDD 414
            L DG     P   T+  + D L       E  S+ DD
Sbjct: 169 SLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDD 206



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 106/270 (39%), Gaps = 64/270 (23%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQF 198
           F + + V    + L  M+ RG    ++    VT  I + G  + G   +A A F  M   
Sbjct: 261 FCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAK 320

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG--- 255
             +PDV  +  +I+ LC+ G    AR +L+ M   G   PP+V TY  L+   CK G   
Sbjct: 321 NLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGV--PPNVVTYNALVHGLCKSGRIE 378

Query: 256 ---------MQTGCRK----------AIRR--RIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                    + +GC            A+ R  R  +A  L   +   G+ PD V YN L+
Sbjct: 379 EACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILV 438

Query: 295 DGCCKTYRIERALELFDDMN-----------------------------------KKGCI 319
           DG  K+ + E+A+ + ++M                                     KG +
Sbjct: 439 DGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGML 498

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           P+  T +S + +     ++D    M+++ +
Sbjct: 499 PDATTCSSILDWVCRSGKLDDVKAMIKEFE 528


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 126/259 (48%), Gaps = 27/259 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++KV+ + G    A+    +M++ + + D   Y+++I+ LC+ G+ + A  L  +ME+ G
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277

Query: 235 FRCPPDVYTYTILISSYCKYGMQTG----CRKAIRRRIW--------------------E 270
           F+   D+  YT LI  +C  G         R  I+R+I                     E
Sbjct: 278 FK--ADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 335

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L + M+ +G  PD V Y  LIDG CK  ++++A  + D M  KGC PN  T+N  I 
Sbjct: 336 AEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILIN 395

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            Y   N ID  +E+ RKM +L   V  + +Y  +I   CE G++  A++   E+V     
Sbjct: 396 GYCKANLIDDGLELFRKM-SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVR 454

Query: 391 PREYTYKLVCDALNAAEEP 409
           P   +YK++ D L    EP
Sbjct: 455 PDIVSYKILLDGLCDNGEP 473



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 131/290 (45%), Gaps = 32/290 (11%)

Query: 144 RGNNVKGLWD----FLKDMSRRG-NGELVTTSS-VTCLIKVLGEEGLVNEALATFYRMKQ 197
           RG    G WD     L+DM +R    ++V  S+ + C +K    EG + EA      M Q
Sbjct: 290 RGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVK----EGKLREAEELHKEMIQ 345

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
               PD   Y  +I+  C+    +KA  +L+ M   G  C P++ T+ ILI+ YCK  + 
Sbjct: 346 RGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG--CGPNIRTFNILINGYCKANL- 402

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                     I +   LFR M  +G V D V YN LI G C+  ++E A ELF +M  + 
Sbjct: 403 ----------IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ----NLNHGVPTSSSYTPIIHALCEAGR 373
             P+ V+Y   +       E +KA+E+  K++     L+ G+     Y  IIH +C A +
Sbjct: 453 VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI-----YNIIIHGMCNASK 507

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           V +A D    L   G  P   TY ++   L      S  D   RK   DG
Sbjct: 508 VDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 128/274 (46%), Gaps = 34/274 (12%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + LI  L  EG V+EAL    RM +   +P +   N ++N LC  G  + A  L++
Sbjct: 142 TVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLID 201

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE------------------ 270
           +M   GF+  P+  TY  ++   CK G QT     + R++ E                  
Sbjct: 202 RMVETGFQ--PNEVTYGPVLKVMCKSG-QTALAMELLRKMEERKIKLDAVKYSIIIDGLC 258

Query: 271 -------ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
                  A +LF  M  KGF  D++ Y  LI G C   R +   +L  DM K+   P+ V
Sbjct: 259 KDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 318

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
            +++ I  +    ++ +A E+ ++M  +  G+ P + +YT +I   C+  ++ +A   L 
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEM--IQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376

Query: 383 ELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            +V  G  P   T+ ++   +N   + +L+DDGL
Sbjct: 377 LMVSKGCGPNIRTFNIL---INGYCKANLIDDGL 407



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 15/218 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + + N +    +  + MS RG   +  T +   LI+   E G +  A   F  M   R R
Sbjct: 397 YCKANLIDDGLELFRKMSLRG--VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVR 454

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+ +Y ++++ LC  G   KA  + E++E    +   D+  Y I+I   C         
Sbjct: 455 PDIVSYKILLDGLCDNGEPEKALEIFEKIEKS--KMELDIGIYNIIIHGMCNAS------ 506

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ +A  LF  +  KG  PDV  YN +I G CK   +  A  LF  M + G  PN
Sbjct: 507 -----KVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             TYN  IR +    +  K+ +++ +++     V  S+
Sbjct: 562 GCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDAST 599



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 114/286 (39%), Gaps = 29/286 (10%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V AR      + D  K M  +G    + T S+  +I        ++ A +   ++ +   
Sbjct: 81  VVARTKQYDLVLDLCKQMELKGIAHNLYTLSI--MINCCCRCRKLSLAFSAMGKIIKLGY 138

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD   ++ +IN LC  G  ++A  L+++M   G +  P + T   L++  C  G  +  
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK--PTLITLNALVNGLCLNGKVSDA 196

Query: 261 RKAIRRRIWE------------------------ANHLFRLMLFKGFVPDVVAYNCLIDG 296
              I R +                          A  L R M  +    D V Y+ +IDG
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            CK   ++ A  LF++M  KG   + + Y + IR +      D   +++R M       P
Sbjct: 257 LCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK-RKITP 315

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              +++ +I    + G++ EA +   E++  G  P   TY  + D 
Sbjct: 316 DVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDG 361



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L + M  KG   ++   + +I+ CC+  ++  A      + K G  P+ VT+++ I    
Sbjct: 94  LCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLC 153

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           +   + +A+E++ +M  + H  PT  +   +++ LC  G+V +A   +  +V+ G  P E
Sbjct: 154 LEGRVSEALELVDRMVEMGHK-PTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNE 212

Query: 394 YTY----KLVCDALNAAEEPSLLDDGLRKRIR-DGIEY 426
            TY    K++C +   A    LL     ++I+ D ++Y
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKY 250


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 128/264 (48%), Gaps = 18/264 (6%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           +C  +   FAR     G+  F KDM   G+   V T ++  +I  + +EG +  A   F 
Sbjct: 100 SCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNI--MIDCMCKEGDIEAASGLFE 157

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            MK     PD   YN +I+   +VG  +   +  E+M+     C PDV TY  LI+ +CK
Sbjct: 158 EMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMK--SMSCEPDVITYNTLINCFCK 215

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           +G           ++ +    FR M   G  P+VV+Y+ L+D  CK   +++AL+ + DM
Sbjct: 216 FG-----------KLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDM 264

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAG 372
            + G +PN  TY S +  Y  +  +  A  +  +M  +  GV  +  +YT +I  LC+  
Sbjct: 265 RRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQV--GVEWNVVTYTALIDGLCDVE 322

Query: 373 RVLEARDFLAELVDGGSVPREYTY 396
           R+ EA +   ++V  G +P   +Y
Sbjct: 323 RIKEAEELFGKMVTAGVIPNLASY 346



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 16/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L  VL EE +  EAL  F +MK+ R  P   + N +++   R+G  +  +   + M   G
Sbjct: 69  LFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAG 128

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P V+TY I+I   CK G            I  A+ LF  M F+G +PD V YN +I
Sbjct: 129 SK--PTVFTYNIMIDCMCKEG-----------DIEAASGLFEEMKFRGLIPDTVTYNSMI 175

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K  R++  +  F++M    C P+ +TYN+ I  +    ++ K +E  R+M+    G
Sbjct: 176 DGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMK--QSG 233

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + P   SY+ ++ A C+   + +A  F  ++   G VP E+TY  + DA
Sbjct: 234 LKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDA 282



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 132/301 (43%), Gaps = 39/301 (12%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  I  A G          ++M  RG   +  T +   +I   G+ G +++ +  F  
Sbjct: 144 CKEGDIEAASG--------LFEEMKFRG--LIPDTVTYNSMIDGYGKVGRLDDTVYFFEE 193

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           MK   C PDV  YN +IN  C+ G   K      +M+  G +  P+V +Y+ L+ ++CK 
Sbjct: 194 MKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLK--PNVVSYSTLVDAFCKE 251

Query: 255 GMQTGCRK---AIRR------------------RIWEANHLFRL---MLFKGFVPDVVAY 290
            M     K    +RR                  +I   +  FRL   M   G   +VV Y
Sbjct: 252 DMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTY 311

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LIDG C   RI+ A ELF  M   G IPN  +Y + I  +     +D+A+E++ +M+ 
Sbjct: 312 TALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMK- 370

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
              G+ P    Y   I +LC   ++  A+  + E+ + G     + Y  + DA   +E P
Sbjct: 371 -GRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENP 429

Query: 410 S 410
           S
Sbjct: 430 S 430



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 114/294 (38%), Gaps = 49/294 (16%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G +   +S T LI    +   ++ AL     MK    +PD+  Y   I +LC +     A
Sbjct: 338 GVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAA 397

Query: 224 RFLLEQMELPGFRCPPDVYT---------------------------------YTILISS 250
           + ++ +M+  G +    +YT                                 + +LI  
Sbjct: 398 KVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDG 457

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            CK        K + + I   ++  R+    G   +   Y  +IDG CK  ++E A  LF
Sbjct: 458 LCK-------NKLVSKAI---DYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLF 507

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
           + M +KG +P+R  Y S I        + +A+ +  KM  +  GV + + +  +     +
Sbjct: 508 EQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEI--GVESGARFGDLCQNTIK 565

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI-RDG 423
               + AR    +  + GS     +  L  + LN+ + P    DG+   + RDG
Sbjct: 566 LSLRMGAR-VGVQHYNLGSADSYISSSL--NDLNSVDGPPRDIDGIGAAVGRDG 616


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 146/295 (49%), Gaps = 19/295 (6%)

Query: 112 LNKATEFYHWVERFFDFFHNEMT-CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           L +ATE       F  F  + +T C  +  + A G+  + L  F +  ++    +LV  +
Sbjct: 331 LQEATELLKDAV-FKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYN 389

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L+K L  +GL+  AL     M +  C PD++ YN++IN LC++GN + A  ++   
Sbjct: 390 S---LVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDA 446

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G+   PDV+T+  LI  YCK           R ++  A  L   M   G  PDV+ Y
Sbjct: 447 IVKGYL--PDVFTFNTLIDGYCK-----------RLKLDSALQLVERMWTYGIAPDVITY 493

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N +++G CK  + +   E F++M  KGC PN +TYN  I  +  +N++++A  ++ +M  
Sbjct: 494 NSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQ 553

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
            +  VP + S+  +IH  C  G +  A     +L + G      T+ ++  A ++
Sbjct: 554 -DGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSS 607



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 126/252 (50%), Gaps = 23/252 (9%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
            L  + +RG    ++ +  TC I + G  E+G + EA+A   RM  +   PDV  YN ++
Sbjct: 233 LLAKVLKRG----MSANKFTCNIWIRGLCEDGRLEEAVALVERMGAY-VAPDVVTYNTLM 287

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             LC+     +A   L +M   G  C PD +TY  +I  YCK GM           + EA
Sbjct: 288 RGLCKDSKVQEAAQYLGRMMNQG--CIPDDFTYNTIIDGYCKSGM-----------LQEA 334

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             L +  +FKGFVPD V Y  LI+G C    IERALELF++   K   P+ V YNS ++ 
Sbjct: 335 TELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKG 394

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                 I  A+++M +M  +  G  P   +Y  II+ LC+ G + +A   + + +  G +
Sbjct: 395 LCRQGLILHALQVMNEM--VEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYL 452

Query: 391 PREYTYKLVCDA 402
           P  +T+  + D 
Sbjct: 453 PDVFTFNTLIDG 464



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 133/280 (47%), Gaps = 24/280 (8%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
             G N + L+D +  + R    ++ T ++V   +  L ++G V E+ A   ++ +     
Sbjct: 190 GHGYNARHLFDEM--LGRDVFPDVATFNNV---LHALCQKGDVMESGALLAKVLKRGMSA 244

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           + +  N+ I  LC  G   +A  L+E+M   G    PDV TY  L+   CK         
Sbjct: 245 NKFTCNIWIRGLCEDGRLEEAVALVERM---GAYVAPDVVTYNTLMRGLCK--------- 292

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               ++ EA      M+ +G +PD   YN +IDG CK+  ++ A EL  D   KG +P+R
Sbjct: 293 --DSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDR 350

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           VTY S I       +I++A+E+  + Q  +   P    Y  ++  LC  G +L A   + 
Sbjct: 351 VTYCSLINGLCAEGDIERALELFNEAQAKDLK-PDLVVYNSLVKGLCRQGLILHALQVMN 409

Query: 383 ELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRK 418
           E+V+ G  P  +TY ++ + L    N ++   +++D + K
Sbjct: 410 EMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVK 449



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 28/251 (11%)

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           I+     G +  A+  F RM  F C P   AYN +++AL      ++A  +  +M   G 
Sbjct: 78  IQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGV 137

Query: 236 RCPPDVYTYTILISSYCKYG------------MQTGCRK------AIRRRI------WEA 271
              PD  T+T+ + S+C  G             + GC         + R +      + A
Sbjct: 138 --APDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNA 195

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
            HLF  ML +   PDV  +N ++   C+   +  +  L   + K+G   N+ T N +IR 
Sbjct: 196 RHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRG 255

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                 +++A+ ++ +M    +  P   +Y  ++  LC+  +V EA  +L  +++ G +P
Sbjct: 256 LCEDGRLEEAVALVERMG--AYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIP 313

Query: 392 REYTYKLVCDA 402
            ++TY  + D 
Sbjct: 314 DDFTYNTIIDG 324



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 15/165 (9%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA     RM Q    PD  ++N +I+  CR G+ + A  L ++++  G+    D  T+
Sbjct: 541 LEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATAD--TF 598

Query: 245 TILISSYC-KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
            ILI +Y  K  MQ             A  +F  M+ KG+ PD+  Y  L+DG CK   +
Sbjct: 599 NILIGAYSSKLNMQM------------AEKIFGEMISKGYKPDLYTYRILVDGLCKAANV 646

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           +RA     +M  KG +P+  T+   +   ++ + + +A+ ++  M
Sbjct: 647 DRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIM 691



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 31/216 (14%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F R  ++ G +   + +  +G     T  +   LI     +  +  A   F  M     +
Sbjct: 570 FCRNGDLDGAYLLFQKLDEKGYS--ATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYK 627

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+Y Y ++++ LC+  N ++A   L +M   GF   P + T+  +++            
Sbjct: 628 PDLYTYRILVDGLCKAANVDRAYAHLAEMISKGF--VPSMATFGRMLNLL---------- 675

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE--LFDDMNKKGCI 319
            A+  R+ EA  +  +M+  G VP+VV      D    T + E A    L +++ KKG  
Sbjct: 676 -AMNHRVSEAVAIIHIMVRMGVVPEVV------DTILSTDKKEIAAPKILVEELMKKG-- 726

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
              ++Y    R Y V++E  +  ++ RK +  +  +
Sbjct: 727 --HISY----RAYEVLHEGVRDNKLTRKARKADASI 756


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/216 (35%), Positives = 111/216 (51%), Gaps = 14/216 (6%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A+  F  MK   CRPD + YN++I++LC      +A  LL++MEL G  C  +V  Y  L
Sbjct: 432 AMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNG--CARNVVIYNTL 489

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I  +CK            +RI EA  +F  M  +G   D V YN LIDG CK+ R+E A 
Sbjct: 490 IDGFCK-----------NKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAA 538

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           +L D M  +G  P++ TYNS + ++    +I KA ++++ M +     P   +Y  +I  
Sbjct: 539 QLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCN-PDIVTYATLISG 597

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           LC+AGRV  A   L  +   G V   + Y  V  AL
Sbjct: 598 LCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQAL 633



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 130/286 (45%), Gaps = 29/286 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           +  G N+ G     + M   G     T  +V  LI    ++G +++AL+          R
Sbjct: 248 YIEGGNLDGALRIKEQMVEYGCP--CTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFR 305

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD + YN ++N LC++G+   A  +++ M L G    PD+YTY  LIS  CK G      
Sbjct: 306 PDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGL--DPDIYTYNSLISGLCKLGEIEEAV 363

Query: 262 KAIRR------------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
           K + +                        R+ EA  + RL+  KG +PDV  +N LI G 
Sbjct: 364 KILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGL 423

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C +   + A++LF++M  KGC P+  TYN  I       ++++A+ ++++M+ LN     
Sbjct: 424 CLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEME-LNGCARN 482

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              Y  +I   C+  R+ EA +   E+   G      TY  + D L
Sbjct: 483 VVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGL 528



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 16/235 (6%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           ++ T +++   E G ++ AL    +M ++ C       NV+IN  C+ G  ++A   +++
Sbjct: 239 TTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQE 298

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
               GFR  PD +TY  L++  CK G               A  +   ML  G  PD+  
Sbjct: 299 AVSEGFR--PDQFTYNTLVNGLCKIG-----------HAKHAMEVVDAMLLGGLDPDIYT 345

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN LI G CK   IE A+++ D M  + C PN VTYN+ I      N +D+A E+ R + 
Sbjct: 346 YNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLT 405

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             + G+ P   ++  +I  LC +     A D   E+   G  P E+TY ++ D+L
Sbjct: 406 --SKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSL 458



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 112/255 (43%), Gaps = 16/255 (6%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
            +N K   D  ++M  +G G      +   LI  L     + EAL     M+   C  +V
Sbjct: 426 SSNHKSAMDLFEEM--KGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNV 483

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             YN +I+  C+     +A  + ++MEL G     D  TY  LI   CK           
Sbjct: 484 VIYNTLIDGFCKNKRIEEAEEIFDEMELQGV--SRDSVTYNTLIDGLCK----------- 530

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
            +R+ +A  L   M+ +G  PD   YN L+   CKT  I++A ++   M   GC P+ VT
Sbjct: 531 SKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVT 590

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y + I        +  A  ++R +Q +   V T  +Y P+I AL +  R  EA     E+
Sbjct: 591 YATLISGLCKAGRVQVASRLLRSIQ-MKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREM 649

Query: 385 VDGGSVPREYTYKLV 399
           +D    P   TYK+V
Sbjct: 650 LDKSEPPDAITYKIV 664



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 22/259 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA   F  M+      D   YN +I+ LC+      A  L++QM + G R  PD +TY
Sbjct: 499 IEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLR--PDKFTY 556

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L++ +CK G            I +A  + + M   G  PD+V Y  LI G CK  R++
Sbjct: 557 NSLLTHFCKTG-----------DIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQ 605

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  L   +  KG +     YN  I+     N   +A+ + R+M + +   P + +Y  +
Sbjct: 606 VASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEP-PDAITYKIV 664

Query: 365 IHALCEAGR-VLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRK---RI 420
              LC  G  + EA DF  E+++ G++P   ++ ++ + L        +DD L K    I
Sbjct: 665 YRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGLCTLS----MDDTLVKLVDMI 720

Query: 421 RDGIEYRFRQVMKVKPIMK 439
            +  ++  R++  ++  +K
Sbjct: 721 MEKAKFSEREISTIRGFLK 739



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 31/256 (12%)

Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           LI+ L  +     AL  F +  KQ    P    Y  ++  L + G+F   R +LE+M+L 
Sbjct: 67  LIETLRRQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLS 126

Query: 234 GFRCPPDVYTYTILISSYCK---YGMQTGCRKAIRRR----------------IWEANHL 274
           G  C  D   + I + SY K   Y    G  K +                   + +AN L
Sbjct: 127 G--CEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKL 184

Query: 275 ------FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
                    M+ +    DV  +N LI   CK +++  A+ + ++M   G  P+  T+ + 
Sbjct: 185 KLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTI 244

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
           ++ Y     +D A+ +  K Q + +G P T  +   +I+  C+ GR+ +A  F+ E V  
Sbjct: 245 MQGYIEGGNLDGALRI--KEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSE 302

Query: 388 GSVPREYTYKLVCDAL 403
           G  P ++TY  + + L
Sbjct: 303 GFRPDQFTYNTLVNGL 318



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 19/232 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVINALCRVGNFNKARFLLE-QMEL 232
            ++  G+  L +E +     M+ ++R +PD   YNV++N L    + NK + +      +
Sbjct: 138 FVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLV---DANKLKLVESAHSSM 194

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              R   DV T+ ILI + CK             ++  A  +   M   G  PD   +  
Sbjct: 195 VRRRIRHDVSTFNILIKALCK-----------AHQVRPAILMMEEMPSYGLSPDETTFTT 243

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           ++ G  +   ++ AL + + M + GC    VT N  I  +     ID+A+  ++  + ++
Sbjct: 244 IMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQ--EAVS 301

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            G  P   +Y  +++ LC+ G    A + +  ++ GG  P  YTY  +   L
Sbjct: 302 EGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGL 353


>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
          Length = 501

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 138/299 (46%), Gaps = 25/299 (8%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           +KA      +E+ F    + +T   +   + R  +     D L+ M   G     T ++ 
Sbjct: 192 SKAASLVRALEQRFP--PDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAP--TKATY 247

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQF-----RCRPDVYAYNVVINALCRVGNFNKARFLL 227
             ++K     G +  A   F +MK+       C+PDV +Y  V++ L   G  +KAR + 
Sbjct: 248 NIILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVF 307

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M + G  C P   TY  LI   CK G            + +A  +F  M+ KG++P+V
Sbjct: 308 DEMSIEG--CKPSTATYNALIQVTCKKG-----------NLEDAVAVFDDMVRKGYIPNV 354

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y  LI G C   ++ RA++L D M  +GC PN  TYN  IRY     EI+K +++   
Sbjct: 355 VTYTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLDLFET 414

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLE---ARDFLAELVDGGSVPREYTYKLVCDAL 403
           M      +P   +Y  II A+    R  +   A   + E+VD G +PR++ +  V + L
Sbjct: 415 MSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPRKFMFNRVLNGL 473



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 9/161 (5%)

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           RR  +A  L R  L + F PD V YN L DG C+     RAL++   M + G  P + TY
Sbjct: 189 RRASKAASLVR-ALEQRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKATY 247

Query: 326 N----SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           N     F R   + +  D  ++M R+  N  +  P   SYT ++H L  AG++ +AR   
Sbjct: 248 NIILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVF 307

Query: 382 AELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRK 418
            E+   G  P   TY    ++ C   N  +  ++ DD +RK
Sbjct: 308 DEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRK 348


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/252 (34%), Positives = 120/252 (47%), Gaps = 17/252 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S T LI  L E G +NEAL  F  M +  C P V  Y V+I AL   G   +A  L  +M
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEM 325

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  G  C P+V+TYT+LI   CK             ++ EA  +   M  KG +P VV Y
Sbjct: 326 KEKG--CEPNVHTYTVLIDGLCK-----------ENKMDEARKMLSEMSEKGLIPSVVTY 372

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LIDG CK   I+ A E+ D M    C PN  TYN  I       ++ KA+ ++ KM  
Sbjct: 373 NALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE 432

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAE 407
                P+  +Y  +IH  C+   +  A   L+ + + G VP ++TY +  D L      E
Sbjct: 433 RKLS-PSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVE 491

Query: 408 EPSLLDDGLRKR 419
           E   L D ++ +
Sbjct: 492 EAGTLFDSVKAK 503



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 111/235 (47%), Gaps = 14/235 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LI  L   G   EAL  F  MK+  C P+V+ Y V+I+ LC+    ++AR +L
Sbjct: 298 TVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKML 357

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            +M   G    P V TY  LI  YCK GM           I +A  +  LM      P+ 
Sbjct: 358 SEMSEKGL--IPSVVTYNALIDGYCKEGM-----------IDDAFEILDLMESNSCGPNT 404

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             YN LI G CK  ++ +A+ L + M ++   P+ +TYNS I     VN+++ A  ++  
Sbjct: 405 RTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSL 464

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           M N N  VP   +Y+  I  LC+ GRV EA      +   G    E  Y  + D 
Sbjct: 465 M-NENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDG 518



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 114/246 (46%), Gaps = 16/246 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L +MS +G    V T +   LI    +EG++++A      M+   C P+   YN +I  
Sbjct: 356 MLSEMSEKGLIPSVVTYNA--LIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICG 413

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+    +KA  LL +M     +  P + TY  LI   CK              +  A  
Sbjct: 414 LCKKRKVHKAMALLNKM--LERKLSPSLITYNSLIHGQCKV-----------NDLESAYR 460

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L  LM   G VPD   Y+  ID  CK  R+E A  LFD +  KG   N V Y + I  Y 
Sbjct: 461 LLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYC 520

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
            V +ID A  ++ +M N +  +P S +Y  +I  LC+  ++ EA   +A+++  G  P  
Sbjct: 521 KVGKIDVAYSLLERMLN-DACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTV 579

Query: 394 YTYKLV 399
            TY ++
Sbjct: 580 VTYTIL 585



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 107/212 (50%), Gaps = 14/212 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+ A   F  M Q  C+ +  +Y  +I+ LC  G  N+A  L   M      C P V TY
Sbjct: 245 VDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTED--NCCPTVRTY 302

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T+LI     Y +    RK       EA +LF  M  KG  P+V  Y  LIDG CK  +++
Sbjct: 303 TVLI-----YALSGSGRKV------EALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMD 351

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A ++  +M++KG IP+ VTYN+ I  Y     ID A E++  M++ + G P + +Y  +
Sbjct: 352 EARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCG-PNTRTYNEL 410

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           I  LC+  +V +A   L ++++    P   TY
Sbjct: 411 ICGLCKKRKVHKAMALLNKMLERKLSPSLITY 442



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 140/321 (43%), Gaps = 44/321 (13%)

Query: 104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWD---------- 153
           DPQ        A  F++W+     F HN  +   M  +  R   + G+ +          
Sbjct: 80  DPQT-------ALSFFNWIALRPGFKHNVHSYSSMLNILIRAR-LLGVAEKIRISMIKSC 131

Query: 154 -------FLKDMSRRGN--GELVTTSSVTC---LIKVLGEEGLVNEALATFYRMKQFRCR 201
                  F+ ++ R+ N  GE     ++ C   ++  L +  L++E    +  +   +  
Sbjct: 132 CSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQIS 191

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++Y +N ++N  C++GN  +A     ++   G    PD +TYT LI  +C+        
Sbjct: 192 PNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLH--PDTFTYTSLILGHCR-------- 241

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               + +  A  +F +M  KG   + V+Y  LI G C+  RI  AL+LF DM +  C P 
Sbjct: 242 ---NKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPT 298

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TY   I   S      +A+ +  +M+      P   +YT +I  LC+  ++ EAR  L
Sbjct: 299 VRTYTVLIYALSGSGRKVEALNLFNEMKE-KGCEPNVHTYTVLIDGLCKENKMDEARKML 357

Query: 382 AELVDGGSVPREYTYKLVCDA 402
           +E+ + G +P   TY  + D 
Sbjct: 358 SEMSEKGLIPSVVTYNALIDG 378



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 116/262 (44%), Gaps = 22/262 (8%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N+++  +  L  M+   NG +    + +  I  L +EG V EA   F  +K    + +  
Sbjct: 453 NDLESAYRLLSLMNE--NGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEV 510

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            Y  +I+  C+VG  + A  LLE+M      C P+ YTY +LI   CK            
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERM--LNDACLPNSYTYNVLIEGLCK-----------E 557

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           +++ EA+ L   ML  G  P VV Y  LI    K    + AL++F+ M   G  P+  TY
Sbjct: 558 KKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTY 617

Query: 326 NSFIRYY---SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
            +F+  Y    ++ E+D  I  M    N    +P   +YT +I      G    A DFL 
Sbjct: 618 TAFLHAYFSQGMLEEVDDVIAKM----NEEGILPDLVTYTVLIDGYARLGLTHRAFDFLK 673

Query: 383 ELVDGGSVPREYTYKLVCDALN 404
            +VD G  P  Y   ++   L+
Sbjct: 674 CMVDTGCKPSLYIVSILIKNLS 695



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 17/218 (7%)

Query: 189 LATFYRMK---QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           L  F +M    +F+ +P +  YN ++ +L +    ++ + +   +EL   +  P++YT+ 
Sbjct: 141 LEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTV--YLELLNNQISPNIYTFN 198

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            +++ YCK G            + EA      ++  G  PD   Y  LI G C+   ++ 
Sbjct: 199 AMVNGYCKIG-----------NVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDN 247

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A E+F  M +KGC  N V+Y + I        I++A+++   M   ++  PT  +YT +I
Sbjct: 248 AYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTE-DNCCPTVRTYTVLI 306

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +AL  +GR +EA +   E+ + G  P  +TY ++ D L
Sbjct: 307 YALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGL 344



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 109/289 (37%), Gaps = 56/289 (19%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LI  + ++G  + AL  F  M     +PDV  Y   ++A    G   +   ++
Sbjct: 578 TVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVI 637

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM------------QTGCR-------------- 261
            +M   G    PD+ TYT+LI  Y + G+             TGC+              
Sbjct: 638 AKMNEEGIL--PDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLS 695

Query: 262 -----KAIRRRI----------------WE------ANHLFRLMLFKGFVPDVVAYNCLI 294
                K  R  I                W+      A  LF  M+  G   DV  Y  LI
Sbjct: 696 HENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALI 755

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C+  R+E A  L   M ++G  P+   YNS +     +    +A+ ++  M   N  
Sbjct: 756 AGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVE-NGL 814

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +P   SY  ++  L   G   +A+     L+  G    E  +K++ D L
Sbjct: 815 LPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGL 863



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 16/200 (8%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G  +  S    LI    ++  + EA    + MK+    P    YN +++  C++G + +
Sbjct: 742 HGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAE 801

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  L++ M   G    P + +Y +L+           C   I     +A  +F  +L  G
Sbjct: 802 AVRLVDAMVENGLL--PLLESYKLLV-----------CGLYIEGSNEKAKAVFHGLLSCG 848

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
           +  D VA+  LIDG  K   ++   EL D M +K          + +   +  N    A+
Sbjct: 849 YNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKDATAQADIACAALMRLAAANSTKGAL 908

Query: 343 E--MMRKMQNLNHGVPTSSS 360
           E   +R + ++NHG  T  S
Sbjct: 909 EDHELRGL-SVNHGELTQLS 927


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 147/287 (51%), Gaps = 20/287 (6%)

Query: 141 VFARGNNVKGLWDFLK-DMSRRGNGELVTTSSV---TCLIKVLGEEGLVNEALATFYRMK 196
           VFA    V G   +   D +RR  G +         T LI+VL + G V +AL+    M 
Sbjct: 110 VFAYNTLVAGYCRYGHLDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDML 169

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
           +  C+P+V  Y V++ A+C+   F +A  +L++M   G  C P++ TY ++I+  C+ G 
Sbjct: 170 RRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKG--CTPNIVTYNVIINGMCREG- 226

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                     R+ +A  L   +   G  PD V+Y  L+ G C + R +   ELF +M +K
Sbjct: 227 ----------RVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEK 276

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI-IHALCEAGRVL 375
            C+PN VT++  IR++     +++AI+++++M    H   T+++   I I+++C+ GRV 
Sbjct: 277 NCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMT--EHECATNTTLCNIVINSICKQGRVD 334

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
           +A  FL  +   G  P   +Y  V   L  AE  +   + L++ +R+
Sbjct: 335 DAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRN 381



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 21/247 (8%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINA 213
           L ++S   +GE       T LI+ L   G  ++A A   R  +    P DV+AYN ++  
Sbjct: 61  LVELSASRDGEAPDVYLCTKLIRNLCRRGRTSDA-ARVLRAAEGSGSPVDVFAYNTLVAG 119

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            CR G+ + AR L+  M +      PD YTYT LI   C  G           R+ +A  
Sbjct: 120 YCRYGHLDAARRLIGSMPVA-----PDAYTYTPLIRVLCDRG-----------RVADALS 163

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L   ML +G  P+VV Y  L++  CK    E+A+ + D+M  KGC PN VTYN  I    
Sbjct: 164 LLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMC 223

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               +D A +++ ++   ++G  P + SYT ++  LC + R  +  +  AE+++   +P 
Sbjct: 224 REGRVDDARDLLNRL--FSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPN 281

Query: 393 EYTYKLV 399
           E T+ ++
Sbjct: 282 EVTFDML 288



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 47/290 (16%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R N+ K   + LK+M R  N       +    I +L ++GL+ +A+    +M++  C   
Sbjct: 367 RWNDAK---ELLKEMVR--NNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVG 421

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQM------------------------------ELP 233
           V  YN ++N  C  G+ + A  L   M                              E+ 
Sbjct: 422 VVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDAAAELVAEML 481

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
              CPP+V T+ +L++ +C+ G            + EA  L   M+  G  P+++ YN L
Sbjct: 482 HRDCPPNVVTFNVLVNFFCQKGF-----------LDEAIELVEQMMEHGCTPNLITYNTL 530

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
            DG  K    E ALEL   +  KG  P+ +T++S I   S  + +++AI+M    Q++  
Sbjct: 531 FDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGM 590

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P +  Y  I+  LC+   +  A DFLA +V  G +P E TY ++ + L
Sbjct: 591 R-PKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGL 639



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 17/225 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+     G+V  A+    +M +  C  +    N+VIN++C+ G  + A   L  M    
Sbjct: 288 LIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNM--GS 345

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           + C PD  +YT ++   C+             R  +A  L + M+     P+ V +N  I
Sbjct: 346 YGCNPDTISYTTVLKGLCRA-----------ERWNDAKELLKEMVRNNCPPNEVTFNTFI 394

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              C+   IE+A+ L + M + GC    VTYN+ +  + V   ID A+E+ R M      
Sbjct: 395 CILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP----C 450

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            P + +YT ++  LC A R+  A + +AE++     P   T+ ++
Sbjct: 451 KPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVL 495



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G  PDV     LI   C+  R   A  +       G   +   YN+ +  Y     +D A
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 129

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
             ++  M       P + +YTP+I  LC+ GRV +A   L +++  G  P   TY ++ +
Sbjct: 130 RRLIGSMPV----APDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLE 185

Query: 402 AL 403
           A+
Sbjct: 186 AM 187


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 126/243 (51%), Gaps = 19/243 (7%)

Query: 183 GLVNEALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           G ++EA A  +  M    C PD++ YN +I  LC+ G    AR L+ +M++ G  C P+V
Sbjct: 367 GRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKG--CEPNV 424

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            TYTILI  +CK G           R+ EA ++   M  KG   + V YNCLI   CK  
Sbjct: 425 ITYTILIDRFCKEG-----------RLEEARNVLDEMSGKGLALNAVGYNCLISALCKDE 473

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
           +++ AL +F DM+ KGC P+  T+NS I     VN+ ++A+ + + M  L   +  + +Y
Sbjct: 474 KVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML-LEGVIANTITY 532

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLR 417
             +IHA    G + EA   + +++  G    + TY    K +C A N  +  +L +D + 
Sbjct: 533 NTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS 592

Query: 418 KRI 420
           K +
Sbjct: 593 KGL 595



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 116/245 (47%), Gaps = 18/245 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L +MS  G G  +      CLI  L ++  V +AL  F  M    C+PD++ +N +I 
Sbjct: 445 NVLDEMS--GKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIF 502

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+V  F +A  L + M L G     +  TY  LI ++ +           R  + EA 
Sbjct: 503 GLCKVNKFEEALGLYQDMLLEGV--IANTITYNTLIHAFLR-----------RGAMQEAL 549

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L   MLF+G   D + YN LI   C+   IE+ L LF+DM  KG  PN ++ N  I   
Sbjct: 550 KLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGL 609

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                I  A+E +R M  ++ G+ P   +Y  +I+ LC+ GR  EA +   +L   G  P
Sbjct: 610 CRTGNIQHALEFLRDM--IHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICP 667

Query: 392 REYTY 396
              TY
Sbjct: 668 DAITY 672



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 98/242 (40%), Gaps = 44/242 (18%)

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            FY M      P VY + VV+ ALC V   + A  LL+ M   G  C P+   Y  LI +
Sbjct: 204 VFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHG--CVPNAIVYQTLIHA 261

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
             K G           R+ E   L   ML  G +PDV  +N  I G CK  RI  A +L 
Sbjct: 262 LXKVG-----------RVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLV 310

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV--------------- 355
           D M  +G  PN  TY   +     + ++D+A  ++ K+ N N  +               
Sbjct: 311 DRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLD 370

Query: 356 ----------------PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
                           P   +Y  +I  LC+ G ++ AR+ + E+   G  P   TY ++
Sbjct: 371 EAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTIL 430

Query: 400 CD 401
            D
Sbjct: 431 ID 432



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 13/229 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  LG  G      A   +MKQ         + +++    R G   +A  LL  M    
Sbjct: 117 LIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMR-GV 175

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           + C P   +Y +++       +   C K +    +E       ML KG  P V  +  ++
Sbjct: 176 YSCEPTFRSYNVVLDVL----LAGNCPKVVPNVFYE-------MLSKGISPTVYTFGVVM 224

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              C    ++ A  L  DM + GC+PN + Y + I     V  +++ +  + +   L   
Sbjct: 225 KALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNE-VLKLLEEMLLMGC 283

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +P  +++   IH LC+  R+ EA   +  ++  G  P  +TY ++   L
Sbjct: 284 IPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGL 332



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEAL 189
           N ++C  +     R  N++   +FL+DM  RG   ++VT +S   LI  L + G   EAL
Sbjct: 598 NNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNS---LINGLCKTGRAQEAL 654

Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
             F +++     PD   YN +I+  C+ G F+ A  LL +    GF   P+  T+ IL+S
Sbjct: 655 NLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF--IPNEVTWYILVS 712

Query: 250 SYCKYGMQ 257
           ++ K G Q
Sbjct: 713 NFIKEGDQ 720


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 115/214 (53%), Gaps = 16/214 (7%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           F  M + +  P+V+ YN++I   C  GN + A  L ++ME  G  C P+V TY  LI  Y
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKG--CLPNVVTYNTLIDGY 250

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK            R+I +   L R M  KG  P++++YN +I+G C+  R++    +  
Sbjct: 251 CKL-----------RKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLT 299

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCE 370
           +MN++G   + VTYN+ I+ Y       +A+ M  +M  L HG+ P+  +YT +IH++C+
Sbjct: 300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM--LRHGLTPSVITYTSLIHSMCK 357

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           AG +  A +FL ++   G  P E TY  + D  +
Sbjct: 358 AGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFS 391



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 134/260 (51%), Gaps = 18/260 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R   +K +   L +M+RRG    +   +   LIK   +EG  ++AL     M +    P 
Sbjct: 287 REGRMKEVSFVLTEMNRRGYS--LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPS 344

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V  Y  +I+++C+ GN N+A   L+QM + G  CP +  TYT L+  + + G        
Sbjct: 345 VITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL-CPNE-RTYTTLVDGFSQKGYMN----- 397

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
                 EA  + R M   GF P VV YN LI+G C T ++E A+ + +DM +KG  P+ V
Sbjct: 398 ------EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVV 451

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           +Y++ +  +    ++D+A+ + R+M  +  G+ P + +Y+ +I   CE  R  EA D   
Sbjct: 452 SYSTVLSGFCRSYDVDEALRVKREM--VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYE 509

Query: 383 ELVDGGSVPREYTYKLVCDA 402
           E++  G  P E+TY  + +A
Sbjct: 510 EMLRVGLPPDEFTYTALINA 529



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 18/254 (7%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  N+    +FL  M  RG        + T L+    ++G +NEA      M      P 
Sbjct: 357 KAGNMNRAMEFLDQMRVRG--LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPS 414

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V  YN +IN  C  G    A  +LE M+  G    PDV +Y+ ++S +C+          
Sbjct: 415 VVTYNALINGHCVTGKMEDAIAVLEDMKEKGL--SPDVVSYSTVLSGFCR---------- 462

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + EA  + R M+ KG  PD + Y+ LI G C+  R + A +L+++M + G  P+  
Sbjct: 463 -SYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEF 521

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           TY + I  Y +  +++KA+++  +M  +  GV P   +Y+ +I+ L +  R  EA+  L 
Sbjct: 522 TYTALINAYCMEGDLEKALQLHNEM--VEKGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579

Query: 383 ELVDGGSVPREYTY 396
           +L    SVP + TY
Sbjct: 580 KLFYEESVPSDVTY 593



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 105/222 (47%), Gaps = 19/222 (8%)

Query: 177 KVLGEE--GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           K L +E   LV ++L   Y +    C      +++V+ +  R+   +KA  ++   +  G
Sbjct: 109 KTLDDEYASLVFKSLQETYDL----CYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHG 164

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F   P V +Y  ++ +  +           +R I  A ++F+ ML     P+V  YN LI
Sbjct: 165 FM--PGVLSYNAVLDATIRS----------KRNISFAENVFKEMLESQVSPNVFTYNILI 212

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C    I+ AL LFD M  KGC+PN VTYN+ I  Y  + +ID   +++R M  L   
Sbjct: 213 RGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMA-LKGL 271

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            P   SY  +I+ LC  GR+ E    L E+   G    E TY
Sbjct: 272 EPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 161/390 (41%), Gaps = 72/390 (18%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           +N+A EF   + R      NE T   +   F++   +   +  L++M+  G    V T +
Sbjct: 361 MNRAMEFLDQM-RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              LI      G + +A+A    MK+    PDV +Y+ V++  CR  + ++A  +  +M 
Sbjct: 420 A--LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMV 477

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G +  PD  TY+ LI  +C+           +RR  EA  L+  ML  G  PD   Y 
Sbjct: 478 EKGIK--PDTITYSSLIQGFCE-----------QRRTKEACDLYEEMLRVGLPPDEFTYT 524

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN------------------------- 326
            LI+  C    +E+AL+L ++M +KG +P+ VTY+                         
Sbjct: 525 ALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYE 584

Query: 327 ----------------SFIRYYSVVNEID---------KAIEMMRKMQNLNHGVPTSSSY 361
                           S I + SVV+ I          +A ++   M   NH  P  ++Y
Sbjct: 585 ESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHK-PDGTAY 643

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
             +IH  C AG + +A     E+V  G +    T   +  AL+   + + L+  +   +R
Sbjct: 644 NIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLR 703

Query: 422 DGIEYRFRQVMKVKPIMKHKELLKCGEIDI 451
              E    +  KV   + H+E    G +D+
Sbjct: 704 -SCELSEAEQAKVLVEINHRE----GNMDV 728



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 100/251 (39%), Gaps = 63/251 (25%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI     EG + +AL     M +    PDV  Y+V+IN L +     +A+ LL ++  
Sbjct: 524 TALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFY 583

Query: 233 PGFRCPPDVYTYTI--------------LISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
                P DV  +T+              LI  +C  GM T           EA+ +F  M
Sbjct: 584 EE-SVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMT-----------EADQVFESM 631

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           L K   PD  AYN +I G C+   I +A  L+ +M K G + + VT  + +         
Sbjct: 632 LGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALV--------- 682

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHAL--CEAGRVLEAR----------------DF 380
            KA+    K+  LN         + I+H L  CE     +A+                D 
Sbjct: 683 -KALHKEGKVNELN---------SVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDV 732

Query: 381 LAELVDGGSVP 391
           LAE+   G +P
Sbjct: 733 LAEMAKDGFLP 743



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           SV  LIK    +G++ EA   F  M     +PD  AYN++I+  CR G+  KA  L ++M
Sbjct: 607 SVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              GF        +T+ + +  K   + G       ++ E N +   +L    + +    
Sbjct: 667 VKSGF------LLHTVTVIALVKALHKEG-------KVNELNSVIVHVLRSCELSEAEQA 713

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             L++   +   ++  L++  +M K G +PN ++
Sbjct: 714 KVLVEINHREGNMDVVLDVLAEMAKDGFLPNGIS 747


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 126/243 (51%), Gaps = 19/243 (7%)

Query: 183 GLVNEALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           G ++EA A  +  M    C PD++ YN +I  LC+ G    AR L+ +M++ G  C P+V
Sbjct: 385 GRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKG--CEPNV 442

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            TYTILI  +CK G           R+ EA ++   M  KG   + V YNCLI   CK  
Sbjct: 443 ITYTILIDRFCKEG-----------RLEEARNVLDEMSGKGLALNAVGYNCLISALCKDE 491

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
           +++ AL +F DM+ KGC P+  T+NS I     VN+ ++A+ + + M  L   +  + +Y
Sbjct: 492 KVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML-LEGVIANTITY 550

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLR 417
             +IHA    G + EA   + +++  G    + TY    K +C A N  +  +L +D + 
Sbjct: 551 NTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS 610

Query: 418 KRI 420
           K +
Sbjct: 611 KGL 613



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 116/245 (47%), Gaps = 18/245 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L +MS  G G  +      CLI  L ++  V +AL  F  M    C+PD++ +N +I 
Sbjct: 463 NVLDEMS--GKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIF 520

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+V  F +A  L + M L G     +  TY  LI ++ +           R  + EA 
Sbjct: 521 GLCKVNKFEEALGLYQDMLLEGV--IANTITYNTLIHAFLR-----------RGAMQEAL 567

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L   MLF+G   D + YN LI   C+   IE+ L LF+DM  KG  PN ++ N  I   
Sbjct: 568 KLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGL 627

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                I  A+E +R M  ++ G+ P   +Y  +I+ LC+ GR  EA +   +L   G  P
Sbjct: 628 CRTGNIQHALEFLRDM--IHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICP 685

Query: 392 REYTY 396
              TY
Sbjct: 686 DAITY 690



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 98/242 (40%), Gaps = 44/242 (18%)

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            FY M      P VY + VV+ ALC V   + A  LL+ M   G  C P+   Y  LI +
Sbjct: 222 VFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALLKDMTRHG--CVPNAIVYQTLIHA 279

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
             K G           R+ E   L   ML  G +PDV  +N  I G CK  RI  A +L 
Sbjct: 280 LSKVG-----------RVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLV 328

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV--------------- 355
           D M  +G  PN  TY   +     + ++D+A  ++ K+ N N  +               
Sbjct: 329 DRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLD 388

Query: 356 ----------------PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
                           P   +Y  +I  LC+ G ++ AR+ + E+   G  P   TY ++
Sbjct: 389 EAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTIL 448

Query: 400 CD 401
            D
Sbjct: 449 ID 450



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 13/229 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  LG  G      A   +MKQ         + +++    R G   +A  LL  M    
Sbjct: 135 LIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMR-GV 193

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           + C P   +Y +++       +   C K +    +E       ML KG  P V  +  ++
Sbjct: 194 YSCEPTFRSYNVVLDVL----LAGNCPKVVPNVFYE-------MLSKGISPTVYTFGVVM 242

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              C    ++ A  L  DM + GC+PN + Y + I   S V  +++ +  + +   L   
Sbjct: 243 KALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNE-VLKLLEEMLLMGC 301

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +P  +++   IH LC+  R+ EA   +  ++  G  P  +TY ++   L
Sbjct: 302 IPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGL 350



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEAL 189
           N ++C  +     R  N++   +FL+DM  RG   ++VT +S   LI  L + G   EAL
Sbjct: 616 NNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNS---LINGLCKTGRAQEAL 672

Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
             F +++     PD   YN +I+  C+ G F+ A  LL +    GF   P+  T+ IL+S
Sbjct: 673 NLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF--IPNEVTWYILVS 730

Query: 250 SYCKYGMQ 257
           ++ K G Q
Sbjct: 731 NFIKEGDQ 738


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 132/280 (47%), Gaps = 31/280 (11%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG  +   + T ++  L +   + EA+A   ++    C P +  YN ++N LC++G   +
Sbjct: 261 NGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE 320

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK------------------YGMQTGCRKAI 264
           A  LL ++   G  C PDV TYT LI    K                    + T C  A+
Sbjct: 321 AIDLLRKIVDNG--CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTAL 378

Query: 265 RR------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
            R      +I +A+ +++ M   G VPDVV  + +IDG  K  RI  A+ +F  M  +G 
Sbjct: 379 IRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGL 438

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            PN V Y++ I       ++D A+EM+ +M+      P + +Y  +I  LC++G V  AR
Sbjct: 439 APNEVVYSALIHGLCKARKMDCALEMLAQMKK-AFCTPDTITYNILIDGLCKSGDVEAAR 497

Query: 379 DFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDD 414
            F  E+++ G  P  YTY ++    C A N      + DD
Sbjct: 498 AFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDD 537



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 117/238 (49%), Gaps = 14/238 (5%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
            NG   T ++   L+  L + G + EA+    ++    C PDV  Y  +I+ L +     
Sbjct: 14  ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSF 73

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A  L ++M L G     D   YT LI       +QTG       +I +A+ +++ M   
Sbjct: 74  EAYKLFKEMALRGL--ALDTVCYTALIREL----LQTG-------KIPQASSVYKTMTSH 120

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G VPDVV  + +IDG  K  RI  A+ +F  M  +G  PN V Y++ I       ++D A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           +EM+ +M+      P + +Y  +I  LC++G V  AR F  E+++ G  P  YTY ++
Sbjct: 181 LEMLAQMKK-AFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 237



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 126/289 (43%), Gaps = 52/289 (17%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +   K+M+ RG    + T   T LI+ L + G + +A + +  M    C PDV   + +I
Sbjct: 76  YKLFKEMALRGLA--LDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMI 133

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + L + G    A  + + ME  G    P+   Y+ LI   CK            R++  A
Sbjct: 134 DGLSKAGRIGAAVRIFKSMEARGL--APNEVVYSALIHGLCK-----------ARKMDCA 180

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR- 330
             +   M      PD + YN LIDG CK+  +E A   FD+M + GC P+  TYN  I  
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 240

Query: 331 -----------------------------YYSVVN------EIDKAIEMMRKMQNLNHGV 355
                                        Y ++V+      +I++A+ +M K+   N   
Sbjct: 241 FCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKI-TANGCT 299

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           PT ++Y  +++ LC+ GR+ EA D L ++VD G  P   TY  + D L 
Sbjct: 300 PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLG 348



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 105/219 (47%), Gaps = 14/219 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA+A   ++    C P +  YN ++N LC++G   +A  LL ++   G  C PDV TY
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG--CTPDVVTY 59

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T LI    K            +R +EA  LF+ M  +G   D V Y  LI    +T +I 
Sbjct: 60  TSLIDGLGK-----------EKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIP 108

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +A  ++  M   GC+P+ VT ++ I   S    I  A+ + + M+      P    Y+ +
Sbjct: 109 QASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLA-PNEVVYSAL 167

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           IH LC+A ++  A + LA++      P   TY ++ D L
Sbjct: 168 IHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGL 206



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 103/237 (43%), Gaps = 16/237 (6%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +   K+M+ RG    + T   T LI+ L + G + +A + +  M    C PDV   + +I
Sbjct: 357 YKLFKEMALRGLA--LDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMI 414

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + L + G    A  + + ME  G    P+   Y+ LI   CK            R++  A
Sbjct: 415 DGLSKAGRIGAAVRIFKSMEARGL--APNEVVYSALIHGLCK-----------ARKMDCA 461

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +   M      PD + YN LIDG CK+  +E A   FD+M + GC P+  TYN  I  
Sbjct: 462 LEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 521

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +      D A  +   M + +       +Y  +I  LC+  ++ +A  +   + + G
Sbjct: 522 FCKAGNTDAACGVFDDMSS-SRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 14/171 (8%)

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           +I EA  L   +   G  P +  YN L++G CK  R+E A++L   +   GC P+ VTY 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           S I          +A ++ ++M      + T   YT +I  L + G++ +A      +  
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDT-VCYTALIRELLQTGKIPQASSVYKTMTS 119

Query: 387 GGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPI 437
            G VP   T              S + DGL K  R G   R  + M+ + +
Sbjct: 120 HGCVPDVVTL-------------STMIDGLSKAGRIGAAVRIFKSMEARGL 157


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI  L ++  V EA   F  M      P++  YN +I+ LC++  +     L+ +M  
Sbjct: 214 STLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEM-- 271

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +  PDV+T   ++ + CK GM           + EA+ +  +M+ +G  P+VV YN 
Sbjct: 272 VDSKIMPDVFTLNTVVDALCKEGM-----------VAEAHDVVDMMIHRGVEPNVVTYNA 320

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG C    ++ A+++FD M  K C+ N ++YN+ I  Y  +  +DKA+ +  +M    
Sbjct: 321 LMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSR-Q 379

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              P + +Y  +IH LC  GR+ +A     E+V  G +P   TY+ + D L
Sbjct: 380 ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYL 430



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 14/233 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           ++  ++  L +EG+V EA      M      P+V  YN +++  C     + A  + + M
Sbjct: 282 TLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTM 341

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                 C  +V +Y  LI+ YCK            + + +A +LF  M  +   P+ V Y
Sbjct: 342 VHKD--CVANVISYNTLINGYCKI-----------QSVDKAMYLFEEMSRQELTPNTVTY 388

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI G C   R++ A+ LF +M  +G IP+ VTY +   Y      +DKA+ +++ ++ 
Sbjct: 389 NTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEG 448

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            N   P    YT I+  +C AG + +ARD  + L   G  P  +TY ++   L
Sbjct: 449 SNWD-PDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGL 500



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 117/266 (43%), Gaps = 29/266 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EAL+TF RM   +  P    +N ++ ++ +  + +    L  QM+   F  PPDVYT 
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMD--SFGIPPDVYTL 108

Query: 245 TILISSYC----------------KYGMQTGCRK--------AIRRRIWEANHLFRLMLF 280
            I+I+S C                K G Q              +  +I EA HLF  M+ 
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +GF P+VV Y  LI+G CK      A+ L   M +  C PN V +++ I       ++ +
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A  +  +M  +  G+ P   +Y  +IH LC+          + E+VD   +P  +T   V
Sbjct: 229 AFNIFSEM--ITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286

Query: 400 CDALNAAEEPSLLDDGLRKRIRDGIE 425
            DAL      +   D +   I  G+E
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVE 312



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 14/218 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+ A +   ++ +   +PD   +  +I  LC  G   +A  L ++M   GF+  P+V TY
Sbjct: 121 VDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQ--PNVVTY 178

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI+  CK G  +    AIR        L R M      P+VV ++ LID  CK  ++ 
Sbjct: 179 GTLINGLCKVGNTSA---AIR--------LLRSMEQGNCQPNVVVFSTLIDSLCKDRQVT 227

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  +F +M  KG  PN VTYNS I     + E      +M +M + +  +P   +   +
Sbjct: 228 EAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVD-SKIMPDVFTLNTV 286

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + ALC+ G V EA D +  ++  G  P   TY  + D 
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDG 324



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 18/233 (7%)

Query: 154 FLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
             ++MSR+   EL   T +   LI  L   G + +A++ F+ M      PD+  Y  + +
Sbjct: 372 LFEEMSRQ---ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSD 428

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+  + +KA  LL+ +E  G    PD+  YT ++   C+ G            + +A 
Sbjct: 429 YLCKNRHLDKAMALLKAIE--GSNWDPDIQIYTTILDGMCRAG-----------ELEDAR 475

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            LF  +  KG  P+V  YN +I G CK   +  A +LF +MNK GC PN  TYN   R +
Sbjct: 476 DLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGF 535

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              NE  + IE++ +M      V  S++ T ++  L + G     +  L ++V
Sbjct: 536 LRNNEALRTIELLEEMLARGFSVDVSTT-TLLVGMLSDDGLDQSVKQILCKIV 587



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 138/330 (41%), Gaps = 42/330 (12%)

Query: 86  EAYNIANNVLVLGPAAYRDPQKVTL-----GLNKATEFYHWVERFFDFFHNEMT-CKEMG 139
           EA+NI + ++  G +    P  VT      GL K  E+ H          NEM   K M 
Sbjct: 228 EAFNIFSEMITKGIS----PNIVTYNSLIHGLCKLCEWKHVTT-----LMNEMVDSKIMP 278

Query: 140 IVFARGNNVKGL---------WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
            VF     V  L          D +  M  RG    V T +       L  E  V+ A+ 
Sbjct: 279 DVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNE--VDVAVK 336

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            F  M    C  +V +YN +IN  C++ + +KA +L E+M        P+  TY  LI  
Sbjct: 337 VFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELT--PNTVTYNTLIHG 394

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            C  G           R+ +A  LF  M+ +G +PD+V Y  L D  CK   +++A+ L 
Sbjct: 395 LCHVG-----------RLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALL 443

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALC 369
             +      P+   Y + +       E++ A ++   + +   G+ P   +Y  +IH LC
Sbjct: 444 KAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSS--KGLQPNVWTYNIMIHGLC 501

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           + G + EA    +E+   G  P + TY L+
Sbjct: 502 KQGLLAEASKLFSEMNKNGCSPNDCTYNLI 531


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 134/272 (49%), Gaps = 20/272 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
            G  V   ++  LIK L +    ++A+   F RM +    PDV++YN +I  LC      
Sbjct: 120 TGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQ 179

Query: 222 KARFLLEQMELPG-FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           +A  LL  M   G + C P+V +Y  +I  + K G            + +A  LF  M+ 
Sbjct: 180 EALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEG-----------EVDKAYFLFHEMMG 228

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G  PDVV YN LIDG CK   +++A+ +   M  KG +P+  TYN  IR Y  + ++++
Sbjct: 229 QGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEE 288

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A+ +++KM     G+ P   +Y+ +I   C+ GR  EAR     +V  G  P    Y ++
Sbjct: 289 AVRLLKKMS--GSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHIL 346

Query: 400 CDALNAAEEPSLLD--DGLRKRIRDGIEYRFR 429
                 A + +L+D  D L   IRDGI +  R
Sbjct: 347 LHGY--ATKGALIDVRDLLDLMIRDGIPFEHR 376



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 142/305 (46%), Gaps = 42/305 (13%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G V++A+  F  M+Q   RPDV +Y+ VI+ LC+ G    A +   QM   G
Sbjct: 381 LICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEG 440

Query: 235 FRCPPDVYTYTILISSYCKYG---------------------------MQTGCRKAIRRR 267
               P++ ++T LI   C  G                           M   C++    R
Sbjct: 441 L--SPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEG---R 495

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + EA   F +++  G  PDVV+YN LIDG C   +++ +++  D M   G  P+  TYNS
Sbjct: 496 VVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNS 555

Query: 328 FIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            +  Y     ++ A+ + R+M  +++     TS+    ++H L +AGR++ AR+   ++V
Sbjct: 556 LLNGYFKNGRVEDALALYREMFRKDVKFCAITSN---IMLHGLFQAGRIVAARELYMKMV 612

Query: 386 DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLK 445
           D G+  R  TY  V   L    E S +D+ LR    D     F   ++   I+ +  LLK
Sbjct: 613 DRGTQLRIETYNTVLGGLC---ENSCVDEALRM-FEDLRSKEFELDVRTFSIVINA-LLK 667

Query: 446 CGEID 450
            G ID
Sbjct: 668 VGRID 672



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 118/264 (44%), Gaps = 29/264 (10%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G +  T +   +I+     G + EA+    +M     +PDV  Y+++I   C++G   +A
Sbjct: 265 GVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEA 324

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTG------------ 259
           R + + M   G +  P+   Y IL+  Y   G            ++ G            
Sbjct: 325 RSVFDSMVRKGQK--PNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILI 382

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           C  A    + +A   F  M   G  PDVV+Y+ +I   CKT R+E A+  F+ M  +G  
Sbjct: 383 CAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLS 442

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           PN +++ S I     + E  K  E+  +M  +N G+ P +     I+  LC+ GRV+EA+
Sbjct: 443 PNIISFTSLIHGLCSIGEWKKVEELAFEM--INRGIHPDAIFMNTIMDNLCKEGRVVEAQ 500

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           DF   ++  G  P   +Y  + D 
Sbjct: 501 DFFDMVIHIGVKPDVVSYNTLIDG 524



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 14/221 (6%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L +EG V EA   F  +     +PDV +YN +I+  C VG  +++   L++M   G R  
Sbjct: 490 LCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLR-- 547

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD +TY  L++ Y K G           R+ +A  L+R M  K      +  N ++ G  
Sbjct: 548 PDSWTYNSLLNGYFKNG-----------RVEDALALYREMFRKDVKFCAITSNIMLHGLF 596

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           +  RI  A EL+  M  +G      TYN+ +      + +D+A+ M   +++    +   
Sbjct: 597 QAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVR 656

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           + ++ +I+AL + GR+ EA+   + +V  G VP   TY L+
Sbjct: 657 T-FSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLM 696



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 17/226 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + +   V+      ++M R+       TS++  ++  L + G +  A   + +M     +
Sbjct: 560 YFKNGRVEDALALYREMFRKDVKFCAITSNI--MLHGLFQAGRIVAARELYMKMVDRGTQ 617

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
             +  YN V+  LC     ++A  + E +    F    DV T++I+I++  K G      
Sbjct: 618 LRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFEL--DVRTFSIVINALLKVG------ 669

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                RI EA  LF  M+ +G VPDV+ Y+ +I    +   +E +  LF  M K GC  +
Sbjct: 670 -----RIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAAD 724

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS--YTPII 365
               N  +R      ++ +A   + K+   N  +  S++    PI+
Sbjct: 725 SHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNFSLEASTAALLIPIV 770


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 128/261 (49%), Gaps = 21/261 (8%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL-GEEGLVNEALATFYRMKQFR 199
           +    N+VK    F ++M   G    V   S+  LIK L   +  V+ AL  F  M    
Sbjct: 129 ILVEENHVKRAIGFYREMRELGIPSSVV--SLNILIKALCKNKETVDSALRIFQEMPNRG 186

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C+PD Y Y  +IN LCR+GN ++A+ L ++ME  GF     V TYT LI   C+      
Sbjct: 187 CQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGF--SASVVTYTSLIHGLCQ------ 238

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   + EA  L   M      P+V  Y+ L+DG CK     +A++L + M+KK  +
Sbjct: 239 -----SNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHL 293

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
           PN VTY++ I       ++ +A+E++ +M  Q L    P +  Y  II  LC AG   EA
Sbjct: 294 PNMVTYSTLINGLCKERKLREAVEILDRMRIQGLK---PNAGLYGKIISGLCAAGSYQEA 350

Query: 378 RDFLAELVDGGSVPREYTYKL 398
            +F+ E+V GG  P   ++ L
Sbjct: 351 ANFIDEMVLGGISPNRASWSL 371



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 97/233 (41%), Gaps = 38/233 (16%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-YGMQTG 259
           R D   + ++I+ L  V  F  A  +LE+M+        D++       S C+ YG    
Sbjct: 47  RHDHETFGLIISRLVTVNQFRPAEGMLERMKQEKCMVTEDIFL------SICRGYGRVHR 100

Query: 260 CRKAIR---------------------RRIWEANHL------FRLMLFKGFVPDVVAYNC 292
              AIR                       + E NH+      +R M   G    VV+ N 
Sbjct: 101 PLDAIRVFHKMEGFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNI 160

Query: 293 LIDGCCKTYR-IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
           LI   CK    ++ AL +F +M  +GC P+  TY + I     +  I +A E+ ++M+  
Sbjct: 161 LIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEME-- 218

Query: 352 NHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             G   S  +YT +IH LC++  + EA   L E+      P  +TY  + D L
Sbjct: 219 QKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGL 271


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI  L ++  V EA   F  M      P++  YN +I+ LC++  +     L+ +M  
Sbjct: 214 STLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEM-- 271

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +  PDV+T   ++ + CK GM           + EA+ +  +M+ +G  P+VV YN 
Sbjct: 272 VDSKIMPDVFTLNTVVDALCKEGM-----------VAEAHDVVDMMIHRGVEPNVVTYNA 320

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG C    ++ A+++FD M  K C+ N ++YN+ I  Y  +  +DKA+ +  +M    
Sbjct: 321 LMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSR-Q 379

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              P + +Y  +IH LC  GR+ +A     E+V  G +P   TY+ + D L
Sbjct: 380 ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYL 430



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 14/233 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           ++  ++  L +EG+V EA      M      P+V  YN +++  C     + A  + + M
Sbjct: 282 TLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTM 341

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                 C  +V +Y  LI+ YCK            + + +A +LF  M  +   P+ V Y
Sbjct: 342 VHKD--CVANVISYNTLINGYCKI-----------QSVDKAMYLFEEMSRQELTPNTVTY 388

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI G C   R++ A+ LF +M  +G IP+ VTY +   Y      +DKA+ +++ ++ 
Sbjct: 389 NTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEG 448

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            N   P    YT I+  +C AG + +ARD  + L   G  P  +TY ++   L
Sbjct: 449 SNWD-PDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGL 500



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 117/266 (43%), Gaps = 29/266 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EAL+TF RM   +  P    +N ++ ++ +  + +    L  QM+   F  PPDVYT 
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMD--SFGIPPDVYTL 108

Query: 245 TILISSYC----------------KYGMQTGCRK--------AIRRRIWEANHLFRLMLF 280
            I+I+S C                K G Q              +  +I EA HLF  M+ 
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +GF P+VV Y  LI+G CK      A+ L   M +  C PN V +++ I       ++ +
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTE 228

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A  +  +M  +  G+ P   +Y  +IH LC+          + E+VD   +P  +T   V
Sbjct: 229 AFNIFSEM--ITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286

Query: 400 CDALNAAEEPSLLDDGLRKRIRDGIE 425
            DAL      +   D +   I  G+E
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVE 312



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 14/218 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+ A +   ++ +   +PD   +  +I  LC  G   +A  L ++M   GF+  P+V TY
Sbjct: 121 VDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQ--PNVVTY 178

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI+  CK G  +    AIR        L R M      P+VV ++ LID  CK  ++ 
Sbjct: 179 GTLINGLCKVGNTSA---AIR--------LLRSMEQGNCQPNVVVFSTLIDSLCKDRQVT 227

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  +F +M  KG  PN VTYNS I     + E      +M +M + +  +P   +   +
Sbjct: 228 EAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVD-SKIMPDVFTLNTV 286

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + ALC+ G V EA D +  ++  G  P   TY  + D 
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDG 324



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 138/330 (41%), Gaps = 42/330 (12%)

Query: 86  EAYNIANNVLVLGPAAYRDPQKVTL-----GLNKATEFYHWVERFFDFFHNEMT-CKEMG 139
           EA+NI + ++  G +    P  VT      GL K  E+ H          NEM   K M 
Sbjct: 228 EAFNIFSEMITKGIS----PNIVTYNSLIHGLCKLCEWKHVTT-----LMNEMVDSKIMP 278

Query: 140 IVFARGNNVKGL---------WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
            VF     V  L          D +  M  RG    V T +       L  E  V+ A+ 
Sbjct: 279 DVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNE--VDVAVK 336

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            F  M    C  +V +YN +IN  C++ + +KA +L E+M        P+  TY  LI  
Sbjct: 337 VFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELT--PNTVTYNTLIHG 394

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            C  G           R+ +A  LF  M+ +G +PD+V Y  L D  CK   +++A+ L 
Sbjct: 395 LCHVG-----------RLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALL 443

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALC 369
             +      P+   Y + +       E++ A ++   + +   G+ P   +Y  +IH LC
Sbjct: 444 KAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSS--KGLQPNVWTYNIMIHGLC 501

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           + G + EA    +E+   G  P + TY L+
Sbjct: 502 KQGLLAEASKLFSEMNKNGCSPNDCTYNLI 531



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 110/233 (47%), Gaps = 18/233 (7%)

Query: 154 FLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
             ++MSR+   EL   T +   LI  L   G + +A++ F+ M      PD+  Y  + +
Sbjct: 372 LFEEMSRQ---ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSD 428

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+  + +KA  LL+ +E  G    PD+  YT ++   C+ G            + +A 
Sbjct: 429 YLCKNRHLDKAMALLKAIE--GSNWDPDIQIYTTILDGMCRAG-----------ELEDAR 475

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            LF  +  KG  P+V  YN +I G CK   +  A +LF +MNK GC PN  TYN   R +
Sbjct: 476 DLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGF 535

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              NE  + IE++ +M      V  S++ T ++  L + G     +  L + V
Sbjct: 536 LRNNEALRTIELLEEMLARGFSVDVSTT-TLLVGMLSDDGLDQSVKQILCKYV 587


>gi|224137884|ref|XP_002326464.1| predicted protein [Populus trichocarpa]
 gi|222833786|gb|EEE72263.1| predicted protein [Populus trichocarpa]
          Length = 476

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 138/281 (49%), Gaps = 18/281 (6%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           L     F+ W     ++ HN     +   +F    N + + D ++  + +    +V   +
Sbjct: 75  LQLGLRFFIWAGDQPNYRHNLYIYNKACSLFKIKQNPQVILDLIE--TYKLEKCVVCVDT 132

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              ++++    GL +EAL    +M +F  RPD  AYNVVI +LC  G+ + A+ L+ +M 
Sbjct: 133 FKVVLRLCKAGGLADEALMVLKKMPEFNIRPDTTAYNVVIRSLCEKGDVDMAKKLMGEMG 192

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
           L      PD+ TY  +I  +C  G           R+ EA  LF +M   G  P+VVAY+
Sbjct: 193 LIDLY--PDMITYVSMIKGFCDVG-----------RLEEAFALFPVMSVHGCYPNVVAYS 239

Query: 292 CLIDGCCKTYRIERALELFDDMNKK--GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
            L+DG C+   +ERA EL  +M K+  GC PN +TY S I+ +        A+ ++  M+
Sbjct: 240 ALLDGICRFGIVERAFELLAEMEKQGEGCCPNVITYTSVIQSFCEQGRTKDALSVLELME 299

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            +    P   + +  I+ +C  G++ +  +F+  +V GGSV
Sbjct: 300 -VRGCAPNRVTASAWINGICTNGQLQDVYNFIERIVAGGSV 339



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 126/277 (45%), Gaps = 26/277 (9%)

Query: 157 DMSRRGNGELVTTS------SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           DM+++  GE+          +   +IK   + G + EA A F  M    C P+V AY+ +
Sbjct: 182 DMAKKLMGEMGLIDLYPDMITYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNVVAYSAL 241

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           ++ +CR G   +A  LL +ME  G  C P+V TYT +I S+C+ G           R  +
Sbjct: 242 LDGICRFGIVERAFELLAEMEKQGEGCCPNVITYTSVIQSFCEQG-----------RTKD 290

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  +  LM  +G  P+ V  +  I+G C   +++      + +   G +     Y+S + 
Sbjct: 291 ALSVLELMEVRGCAPNRVTASAWINGICTNGQLQDVYNFIERIVAGGSVSIGDCYSSLVV 350

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
               + ++++A +  R+   L+ G+ P S + + +I  +C   RVL+      E+   G 
Sbjct: 351 CLIKIKKVEEAEKTFRRA--LSSGMKPDSLACSMMIREICSEKRVLDGFCLYEEVEKTGC 408

Query: 390 VPR----EYTYKL--VCDALNAAEEPSLLDDGLRKRI 420
           +       Y+  L  +C   ++AE   L    L KRI
Sbjct: 409 LSSIDIDIYSILLAGLCQQGHSAEAARLARSMLEKRI 445


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 144/326 (44%), Gaps = 28/326 (8%)

Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           R+  K  +G+N   +F+ W  +  ++ H+  T   +            +W  +++M R  
Sbjct: 94  REVMKTDVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLELVEQYGEMWKMIQEMVRSP 153

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
              +VT   ++ +I++LG   ++ +A+  FY++K  +C+P   AYN +I  L   G + K
Sbjct: 154 IC-VVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEK 212

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR---------------- 266
              L  +M   G  C PD  TY+ LIS++CK G Q    + +                  
Sbjct: 213 VHELYNEMSNEG-HCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMI 271

Query: 267 --------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                    +  A  LF  M +    PDV  Y  LI G  K  RI+ A   + +M ++ C
Sbjct: 272 ISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDC 331

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLEA 377
            P+ V  N+ I +      +D  +++  +M  ++H +P   +Y  II AL E+  RV E 
Sbjct: 332 KPDTVVMNNMINFLGKAGRLDDGLKLFEEM-GVSHCIPNVVTYNTIIKALFESKSRVSEV 390

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
             +   +   G  P  +TY ++ D  
Sbjct: 391 FSWFERMKGSGISPSPFTYSILIDGF 416



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 129/276 (46%), Gaps = 18/276 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +F + +NV G     ++M        V T   T LI+ LG+ G ++EA   ++ M++  C
Sbjct: 274 LFFKLDNVHGALSLFEEMRYMYCRPDVFT--YTELIRGLGKAGRIDEAYHFYHEMQREDC 331

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PD    N +IN L + G  +    L E+M +    C P+V TY  +I +  +       
Sbjct: 332 KPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVS--HCIPNVVTYNTIIKALFES------ 383

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
               + R+ E    F  M   G  P    Y+ LIDG CKT RIE+A+ L ++M++KG  P
Sbjct: 384 ----KSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPP 439

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
               Y S I         D A E+ ++++  N G  ++  Y  +I  L +AGR+ +A + 
Sbjct: 440 CPAAYCSLIDALGKAKRYDLACELFQELKE-NCGSSSARVYAVMIKHLGKAGRLDDAINL 498

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
             E+   G  P  Y Y  +   L  A    +LD+ L
Sbjct: 499 FDEMSKLGCTPNVYAYNALMSGLARA---CMLDEAL 531



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 139/327 (42%), Gaps = 41/327 (12%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKG----LWDFLKDMSRRGNGELV 167
           +++A  FYH ++R          CK   +V     N  G    L D LK     G    +
Sbjct: 316 IDEAYHFYHEMQR--------EDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCI 367

Query: 168 -TTSSVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
               +   +IK L E +  V+E  + F RMK     P  + Y+++I+  C+     KA  
Sbjct: 368 PNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMM 427

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYG-----------MQTGCRKAIRR-------- 266
           LLE+M+  GF  PP    Y  LI +  K             ++  C  +  R        
Sbjct: 428 LLEEMDEKGF--PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKH 485

Query: 267 -----RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A +LF  M   G  P+V AYN L+ G  +   ++ AL     M + GC+P+
Sbjct: 486 LGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPD 545

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             +YN  +   +      +A+EM+  M+N +   P + SY  ++ AL  AG   EA + +
Sbjct: 546 INSYNIILNGLAKTGGPHRAMEMLTNMKN-STIKPDAVSYNTVLSALSHAGMFEEAAELM 604

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEE 408
            E+   G      TY  + +A+   ++
Sbjct: 605 KEMNALGFEYDLITYSSILEAIGKVDQ 631


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 150/326 (46%), Gaps = 28/326 (8%)

Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           R+  K  +G+N   +F+ W  +  ++ H+  T   +            +W  +++M R  
Sbjct: 61  REVMKTDVGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNP 120

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
              +VT + ++ ++++LG   +V +A+  FY++K  +C+P   AYN +I  L   G + K
Sbjct: 121 IC-VVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEK 179

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR----------RIWE-- 270
              L  +M   G  C PD  TY+ LIS++CK G +    + +            +I+   
Sbjct: 180 VHQLYNEMSTEG-HCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTML 238

Query: 271 ------------ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                       A  LF  M  +   PDV  Y  LI G  K  RI+ A   F +M ++GC
Sbjct: 239 IALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGC 298

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLEA 377
            P+ V  N+ I +      +D A+++ ++M+ L   +P+  +Y  II AL E+  R  E 
Sbjct: 299 RPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLR-CIPSVVTYNTIIKALFESKSRASEV 357

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
             +   + + G  P  +TY ++ D  
Sbjct: 358 PSWFERMKESGISPSSFTYSILIDGF 383



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 127/276 (46%), Gaps = 18/276 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +F + N+  G     ++M  +     V T   T LI+ LG+ G ++EA   F  M++  C
Sbjct: 241 LFFKFNDAHGALSLFEEMRHQYCRPDVFT--YTELIRGLGKAGRIDEAYHFFCEMQREGC 298

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           RPD    N +IN L + G  + A  L ++ME    RC P V TY  +I +  +       
Sbjct: 299 RPDTVFMNNMINFLGKAGRLDDAMKLFQEMET--LRCIPSVVTYNTIIKALFES------ 350

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
               + R  E    F  M   G  P    Y+ LIDG CKT R+E+A+ L ++M++KG  P
Sbjct: 351 ----KSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 406

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
               Y S I         D A E+ ++++  N G  ++  Y  +I  L +AGR+ +A + 
Sbjct: 407 CPAAYCSLIDALGKAKRYDLACELFQELKE-NCGSSSARVYAVMIKHLGKAGRLDDAINM 465

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
             E+   G  P  Y Y  +   L       +LD+ L
Sbjct: 466 FDEMNKLGCAPDVYAYNALMSGL---ARTGMLDEAL 498



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 113/258 (43%), Gaps = 28/258 (10%)

Query: 175 LIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           +IK L E +   +E  + F RMK+    P  + Y+++I+  C+     KA  LLE+M+  
Sbjct: 343 IIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEK 402

Query: 234 GFRCPPDVYTYTILISSYCKYG-----------MQTGCRKAIRR-------------RIW 269
           GF  PP    Y  LI +  K             ++  C  +  R             R+ 
Sbjct: 403 GF--PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLD 460

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A ++F  M   G  PDV AYN L+ G  +T  ++ AL     M + GCIP+  +YN  +
Sbjct: 461 DAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIIL 520

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
              +      +A+EM+  M+  +   P   SY  ++ AL  AG   EA   + E+   G 
Sbjct: 521 NGLAKTGGPHRAMEMLSNMKQ-STVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGF 579

Query: 390 VPREYTYKLVCDALNAAE 407
                TY  + +A+   +
Sbjct: 580 EYDLITYSSILEAIGKVD 597



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G +   +S   ++  L + G  + A+     MKQ   RPDV +YN V+ AL   G F +
Sbjct: 507 HGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEE 566

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           A  L+++M   GF    D+ TY+ ++ +  K
Sbjct: 567 ASKLMKEMNTLGFEY--DLITYSSILEAIGK 595


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 131/280 (46%), Gaps = 24/280 (8%)

Query: 151 LWDFLKDMSRRGNGELV-------TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           L D L    R G  E +        T +  C I  L + G V+ AL  + RM +    PD
Sbjct: 507 LIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPD 566

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              +N++I   C+ GNF +A  L E+M     +  PDV T+  LI   CK G        
Sbjct: 567 KVTFNILIAGACKAGNFEQASALFEEMVAKNLQ--PDVMTFGALIDGLCKAG-------- 616

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              ++  A  +  LM   G  P+VV YN L+ G CK+ RIE A +  ++M   GC+P+ +
Sbjct: 617 ---QVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSI 673

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           TY S +      +  D A++++ ++++     P + +Y  ++  L ++G+  +A   L E
Sbjct: 674 TYGSLVYALCRASRTDDALQLVSELKSFGWD-PDTVTYNILVDGLWKSGQTEQAITVLEE 732

Query: 384 LVDGGSVPREYTYKLVCDALNAA---EEPSLLDDGLRKRI 420
           +V  G  P   TY  + D+L  A   EE   L   +  R+
Sbjct: 733 MVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRV 772



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 118/238 (49%), Gaps = 17/238 (7%)

Query: 175 LIKVLGEEGLVNEALATFY-RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           +++ L   G    AL  F   M +    P +  YN +IN LC+         L E++   
Sbjct: 186 VLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVER 245

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    PDV TY  LI S CK G            + EA  L   M  +  VP+VV Y+ L
Sbjct: 246 GHH--PDVVTYNTLIDSLCKAG-----------DLEEARRLHGDMSSRSCVPNVVTYSVL 292

Query: 294 IDGCCKTYRIERALELFDDMNKKGC--IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
           I+G CK  RI+ A EL  +M +K C  +PN +TYNSF+      +   +A E+MR +++ 
Sbjct: 293 INGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDG 352

Query: 352 NHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           +  V P + +++ +I  LC+ G++ EA     +++ GG VP   TY  + + L  A++
Sbjct: 353 SLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADK 410



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 129/276 (46%), Gaps = 30/276 (10%)

Query: 148 VKGLW---------DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
           V GLW           L++M  +G+   V T +   LI  L + G + EA      M   
Sbjct: 714 VDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNT--LIDSLCKAGDLEEARRLHGDMSSR 771

Query: 199 R---CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
               C P+V  Y+V+IN LC+VG  ++AR L+++M        P++ TY   +   CK  
Sbjct: 772 VSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQS 831

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGF--VPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           M           + EA  L R +        PD V ++ LIDG CK  + + A  +FDDM
Sbjct: 832 M-----------MAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDM 880

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
              G +PN VTYN  +      +++++A  M+  M  ++ GV P   +Y+ ++ A C+A 
Sbjct: 881 IAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESM--VDKGVTPDVITYSVLVDAFCKAS 938

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            V EA + L  +   G  P   T+  + D L  +++
Sbjct: 939 HVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQ 974



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 117/255 (45%), Gaps = 21/255 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA--LATFYRMKQFRCRPDVYAYNVV 210
           + +++M+R+    L    +    +  L ++ +  EA  L    R    R  PD   ++ +
Sbjct: 307 ELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTL 366

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           I+ LC+ G  ++A  + + M   G+   P+V TY  L++  CK             ++  
Sbjct: 367 IDGLCKCGQIDEACSVFDDMIAGGYV--PNVITYNALVNGLCK-----------ADKMER 413

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A+ +   M+ KG  PDV+ Y+ L+D  CK  R++ ALEL   M  +GC PN VT+NS I 
Sbjct: 414 AHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIID 473

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                +   +A +M   M  L HG VP   +Y  +I  L   GR  +A   L  + D   
Sbjct: 474 GLCKSDRSGEAFQMFDDMA-LKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD--- 529

Query: 390 VPREYTYKLVCDALN 404
            P  Y +    + L+
Sbjct: 530 -PDTYAFNCCINGLS 543



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 21/255 (8%)

Query: 153  DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA--LATFYRMKQFRCRPDVYAYNVV 210
            + +++M R+    L    +    +  L ++ ++ EA  L    R    R  PD   ++ +
Sbjct: 801  ELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTL 860

Query: 211  INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
            I+ LC+ G  ++A  + + M   G+   P+V TY +L++  CK             ++  
Sbjct: 861  IDGLCKCGQTDEACNVFDDMIAGGYV--PNVVTYNVLMNGLCK-----------TDKMER 907

Query: 271  ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
            A+ +   M+ KG  PDV+ Y+ L+D  CK   ++ ALEL   M  +GC PN VT+NS I 
Sbjct: 908  AHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIID 967

Query: 331  YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                 ++  +A +M   M  L HG+ P   +Y  +I  L   G   +A   L  + D   
Sbjct: 968  GLCKSDQSGEAFQMFDDM-TLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPD--- 1023

Query: 390  VPREYTYKLVCDALN 404
             P  Y +    + L+
Sbjct: 1024 -PDTYAFNCCINGLS 1037



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 152/353 (43%), Gaps = 98/353 (27%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           L+D S R + + VT S+   LI  L + G ++EA + F  M      P+V  YN ++N L
Sbjct: 349 LRDGSLRVSPDTVTFST---LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGL 405

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-----------YGMQT-GCRK 262
           C+     +A  ++E M   G    PDV TY++L+ ++CK           +GM + GC  
Sbjct: 406 CKADKMERAHAMIESMVDKGVT--PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 463

Query: 263 AI------------RRRIWEANHLFRLMLFK-GFVPDVV--------------------- 288
            +              R  EA  +F  M  K G VPD +                     
Sbjct: 464 NVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEAL 523

Query: 289 ----------AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI--------- 329
                     A+NC I+G  K   + RAL++++ M +   +P++VT+N  I         
Sbjct: 524 LDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNF 583

Query: 330 --------------------RYYSVVNEIDKA--IEMMRKMQNL--NHGVPTS-SSYTPI 364
                                + ++++ + KA  +E  R + +L  N GVP +  +Y  +
Sbjct: 584 EQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNAL 643

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           +H LC++GR+ EA  FL E+V  G VP   TY  +  AL  A   S  DD L+
Sbjct: 644 VHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRA---SRTDDALQ 693



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 125/286 (43%), Gaps = 52/286 (18%)

Query: 155  LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
            L+D S R + + VT S+   LI  L + G  +EA   F  M      P+V  YNV++N L
Sbjct: 843  LRDGSLRVSPDTVTFST---LIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGL 899

Query: 215  CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
            C+     +A  ++E M   G    PDV TY++L+ ++CK              + EA  L
Sbjct: 900  CKTDKMERAHAMIESMVDKGVT--PDVITYSVLVDAFCK-----------ASHVDEALEL 946

Query: 275  FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN-KKGCIPNRVTY-------- 325
               M  +G  P+VV +N +IDG CK+ +   A ++FDDM  K G  P+++TY        
Sbjct: 947  LHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLF 1006

Query: 326  -----------------------NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
                                   N  I   S + ++ +A+  M +++     VP   ++ 
Sbjct: 1007 RTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELEL----VPDKVTFN 1062

Query: 363  PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
             +I   C+AG   +A     E+V     P   T+  + D L  A +
Sbjct: 1063 ILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQ 1108



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 129/308 (41%), Gaps = 24/308 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMT-CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
            T+FY W      F H   +  K + ++   G+  K +  F   +  R      T S  T
Sbjct: 94  GTQFYDWAAALPGFKHTIFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYS--T 151

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            L       G V   L  F R++       V  YN+V+ +LCR G   +A  +  + E+ 
Sbjct: 152 LLRATYKAGGDVERTLGFFRRIRSSS--RSVADYNIVLQSLCRAGETARALEIF-RGEMA 208

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
                P + TY  +I+  CK              +     LF  ++ +G  PDVV YN L
Sbjct: 209 RDGVAPTIVTYNTIINGLCK-----------SNELGAGMELFEELVERGHHPDVVTYNTL 257

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ID  CK   +E A  L  DM+ + C+PN VTY+  I     V  ID+A E++++M   + 
Sbjct: 258 IDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSC 317

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG--SVPREYTYKLVCDAL----NAA 406
            V P   +Y   +  LC+     EA + +  L DG     P   T+  + D L       
Sbjct: 318 DVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQID 377

Query: 407 EEPSLLDD 414
           E  S+ DD
Sbjct: 378 EACSVFDD 385



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 20/209 (9%)

Query: 154  FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
             ++ M  +G    V T SV  L+    +   V+EAL   + M    C P+V  +N +I+ 
Sbjct: 911  MIESMVDKGVTPDVITYSV--LVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDG 968

Query: 214  LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT--------------- 258
            LC+     +A  + + M L      PD  TY  LI    + G                  
Sbjct: 969  LCKSDQSGEAFQMFDDMTLK-HGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTY 1027

Query: 259  --GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
               C      ++ + +     ML    VPD V +N LI G CK    E+A  LF++M  K
Sbjct: 1028 AFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAK 1087

Query: 317  GCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
               P+ +T+ + I       +++   ++M
Sbjct: 1088 NLQPDVMTFGALIDGLCKAGQVEATWDIM 1116


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 127/254 (50%), Gaps = 16/254 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+    +  V +A+     M++  C+PDV  YNV+IN +C+ G  ++A   L  M L
Sbjct: 248 TILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPL 307

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C P+V T+ I++ S C  G           R  +A  L   ML KG  P VV +N 
Sbjct: 308 YG--CQPNVITHNIILRSMCSTG-----------RWMDAERLLADMLRKGCSPSVVTFNI 354

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI+  C+   + RA+++ + M K GC+PN ++YN  +  +    ++D+AIE +  M  ++
Sbjct: 355 LINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIM--VS 412

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
            G  P   +Y  ++ ALC+ G+   A + L +L   G  P   TY  V D L    +   
Sbjct: 413 RGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEY 472

Query: 412 LDDGLRKRIRDGIE 425
             + L +  R G++
Sbjct: 473 AAELLEEMRRKGLK 486



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 129/250 (51%), Gaps = 16/250 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L DM R+G    V T ++  LI  L  + L+  A+    +M +  C P+  +YN +++ 
Sbjct: 336 LLADMLRKGCSPSVVTFNI--LINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHG 393

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+    ++A   LE M   G  C PD+ TY  L+++ CK G           +   A  
Sbjct: 394 FCQEKKMDRAIEYLEIMVSRG--CYPDIVTYNTLLTALCKDG-----------KADAAVE 440

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +   +  KG  P ++ YN +IDG  K  + E A EL ++M +KG  P+ +TY++ +R   
Sbjct: 441 ILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLG 500

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
              ++D+AI++   M+ L+   P++ +Y  I+  LC+A +   A DFLA +V+ G  P +
Sbjct: 501 CEGKVDEAIKIFHDMEGLSIK-PSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTK 559

Query: 394 YTYKLVCDAL 403
            TY ++ + +
Sbjct: 560 ATYTILIEGI 569



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 17/241 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
            G++    + T LI+     G   +A      ++     PDV  YNV+I   C+ G  +K
Sbjct: 136 QGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDK 195

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  +LE+M +      PDV TY  ++ S C  G           ++ EA  +    + + 
Sbjct: 196 ALQVLERMSVA-----PDVVTYNTILRSLCDSG-----------KLKEAMEVLDRQMQRE 239

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PDV+ Y  LI+  C    + +A++L D+M KKGC P+ VTYN  I        +D+AI
Sbjct: 240 CYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAI 299

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + +  M  L    P   ++  I+ ++C  GR ++A   LA+++  G  P   T+ ++ + 
Sbjct: 300 KFLNNMP-LYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINF 358

Query: 403 L 403
           L
Sbjct: 359 L 359



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 145/317 (45%), Gaps = 39/317 (12%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           E TC + G+    G  +K     L +M ++G    V T +V  LI  + +EG ++EA+  
Sbjct: 252 EATCNDSGV----GQAMK----LLDEMRKKGCKPDVVTYNV--LINGICKEGRLDEAIKF 301

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              M  + C+P+V  +N+++ ++C  G +  A  LL  M   G  C P V T+ ILI+  
Sbjct: 302 LNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKG--CSPSVVTFNILINFL 359

Query: 252 CKYGM------------QTGCRK------------AIRRRIWEANHLFRLMLFKGFVPDV 287
           C+  +            + GC                 +++  A     +M+ +G  PD+
Sbjct: 360 CRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDI 419

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V YN L+   CK  + + A+E+ + ++ KGC P  +TYN+ I   + V + + A E++ +
Sbjct: 420 VTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEE 479

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           M+    G+ P   +Y+ ++  L   G+V EA     ++      P   TY  +   L  A
Sbjct: 480 MRR--KGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKA 537

Query: 407 EEPSLLDDGLRKRIRDG 423
           ++ S   D L   +  G
Sbjct: 538 QQTSRAIDFLAYMVEKG 554



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 10/175 (5%)

Query: 250 SYCKYGMQTGCRKAIRR-RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
           S+ ++      RK +R   + E       M+++G +PDV+A   LI G C++ +  +A  
Sbjct: 104 SFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATR 163

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           + + +   G +P+ +TYN  I  Y    EIDKA++++ +M       P   +Y  I+ +L
Sbjct: 164 IMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMSV----APDVVTYNTILRSL 219

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKR 419
           C++G++ EA + L   +     P   TY ++    C+     +   LLD+ +RK+
Sbjct: 220 CDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDE-MRKK 273



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 15/177 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           ++L+ M  RG    + T +   L+  L ++G  + A+    ++    C P +  YN VI+
Sbjct: 405 EYLEIMVSRGCYPDIVTYNT--LLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVID 462

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            L +VG    A  LLE+M   G +  PD+ TY+ L+          GC      ++ EA 
Sbjct: 463 GLTKVGKTEYAAELLEEMRRKGLK--PDIITYSTLLRGL-------GCEG----KVDEAI 509

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            +F  M      P  V YN ++ G CK  +  RA++    M +KGC P + TY   I
Sbjct: 510 KIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILI 566


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 130/272 (47%), Gaps = 17/272 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    S T LI    E G ++EAL  F++MK+  C PDV  Y V++ A C VG   +A
Sbjct: 255 GCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEA 314

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
               E+M   G    P+VYTYT+LI  +CK G           ++ E   +   ML KG 
Sbjct: 315 LKFFEEMVENGIE--PNVYTYTVLIDYFCKVG-----------KMDEGMEMLSTMLEKGL 361

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           V  VV +N LIDG CK   +E A+ + D M      PN  TYN  I  +     +D+A+ 
Sbjct: 362 VSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMA 421

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++ KM   N   P   +Y  +IH LC+A  V  A      ++  G VP + T+    D L
Sbjct: 422 LLNKMYE-NKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCL 480

Query: 404 ---NAAEEPSLLDDGLRKRIRDGIEYRFRQVM 432
                 E+   + + L+++  +  E+ +  ++
Sbjct: 481 CKMGKVEQAHQVFESLKEKHAEANEFLYTALI 512



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 16/237 (6%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           ++ +S   L  VL   GL++E    F  M      P++ ++N ++NA C++GN   A+  
Sbjct: 153 LSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAY 212

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
              +   GF C  D +TYT LI  YCK              + +A  +F +M  +G + +
Sbjct: 213 FCGLMKFGFCC--DSFTYTSLILGYCKI-----------HELGDAYKVFEIMPQEGCLRN 259

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            V+Y  LI G C+  +I+ ALELF  M + GC P+  TY   +  +  V +  +A++   
Sbjct: 260 EVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFE 319

Query: 347 KMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +M  + +G+ P   +YT +I   C+ G++ E  + L+ +++ G V     +  + D 
Sbjct: 320 EM--VENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDG 374



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 126/275 (45%), Gaps = 25/275 (9%)

Query: 130 HNEMTCKEMGIVFARGNNVKGLWDFLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188
           +NE+ C      F R  ++      L  M   + +  LVT ++   LI  L +  +V+ A
Sbjct: 403 YNELICG-----FCRKKSMDRAMALLNKMYENKLSPNLVTYNT---LIHGLCKARVVDSA 454

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
               + M +    PD   +   I+ LC++G   +A  + E ++        + + YT LI
Sbjct: 455 WRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEK--HAEANEFLYTALI 512

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
             YCK             +  +A+ LF+ MLF+G  P+ + +N L+DG  K  ++E A+ 
Sbjct: 513 DGYCK-----------AEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMS 561

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
           L D M K    P   TY   I      ++ D+A   + +M  ++ G  P   +YT  I A
Sbjct: 562 LVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQM--ISSGCQPNVVTYTAFIKA 619

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            C  GR+LEA + + ++ + G +   + Y ++ +A
Sbjct: 620 YCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNA 654



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 120/283 (42%), Gaps = 23/283 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL  M   G    V T   T  IK    +G + EA     ++K+     D + Y+V++NA
Sbjct: 597 FLDQMISSGCQPNVVT--YTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNA 654

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI-----SSYCKYGMQTGCRKA----I 264
              +G  + A  +L +M   G  C P   TY+IL+       Y K GM            
Sbjct: 655 YGCIGQLDSAFGVLIRMFDTG--CEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVD 712

Query: 265 RRRIWEA------NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
              IW+         LF  M+ +G VP+V  Y+ LI G CK   +  A  LF+ M + G 
Sbjct: 713 NANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGI 772

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            P+   +NS +     +   ++A+ ++  M   NH +    SY  ++  L E G   +A 
Sbjct: 773 SPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNH-LAHLESYKLLVCGLFEQGNQEKAE 831

Query: 379 DFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLLDDGLRK 418
           +    L+  G    E  +K++ D L      +E S L D + K
Sbjct: 832 EIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIMEK 874



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G++ +A+     MK  +  P+   YN +I   CR  + ++A  LL +M    
Sbjct: 371 LIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYEN- 429

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P++ TY  LI   CK            R +  A  L  LM+  GFVPD   +   I
Sbjct: 430 -KLSPNLVTYNTLIHGLCK-----------ARVVDSAWRLHHLMIKDGFVPDQRTFCAFI 477

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK  ++E+A ++F+ + +K    N   Y + I  Y    +   A  + ++M  L  G
Sbjct: 478 DCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRM--LFEG 535

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P S ++  ++  L + G+V +A   +  +    + P  +TY ++ + +
Sbjct: 536 CFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEI 585



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 104/254 (40%), Gaps = 44/254 (17%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++A   F RM    C P+   +NV+++ L + G    A  L++ M    F   P V+TYT
Sbjct: 522 SDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVM--GKFDAKPTVHTYT 579

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           ILI             + +R   ++ AN     M+  G  P+VV Y   I   C+  R+ 
Sbjct: 580 ILI------------EEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLL 627

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A E+   + ++G + +   Y+  +  Y  + ++D A  ++ +M   + G  P+  +Y+ 
Sbjct: 628 EAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRM--FDTGCEPSRQTYSI 685

Query: 364 IIHAL--------------------CEAGRVLEARDF------LAELVDGGSVPREYTYK 397
           ++  L                     +   + +  DF        ++V+ G VP   TY 
Sbjct: 686 LLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYS 745

Query: 398 LVCDALNAAEEPSL 411
            +   L   E  SL
Sbjct: 746 KLIKGLCKVEHLSL 759



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 32/154 (20%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           F +M +  C P+V  Y+ +I  LC+V + + A  L   M+  G    P    +  L+SS 
Sbjct: 729 FEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGI--SPSENIHNSLLSSC 786

Query: 252 CKYGMQTGCRKAIR--RRIWEANHL-------------------------FRLMLFKGFV 284
           CK GM     +A+R    + E NHL                         FR +L  G+ 
Sbjct: 787 CKLGMH---EEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYN 843

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
            D V +  L+DG  +   ++   +L D M K GC
Sbjct: 844 YDEVVWKVLLDGLVRKGYVDECSQLRDIMEKTGC 877


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 163/403 (40%), Gaps = 63/403 (15%)

Query: 26  VPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKK 85
           V FD+ LA        P  +  +   L+  P+   +  +  G Q GFRH T         
Sbjct: 121 VLFDSALA--------PIWVSKILLGLREDPKLALKFFKWAGSQVGFRHTT--------- 163

Query: 86  EAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARG 145
           E+Y I  + LV     Y D                      D     +    M + F   
Sbjct: 164 ESYCIIVH-LVFRARMYTDAH--------------------DTVKEVIMNSRMDMGFPVC 202

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N    LW   +++   G+G          L  V  E GL+ EA   F RM+ FR  P   
Sbjct: 203 NIFDMLWS-TRNICVSGSGVF------DVLFSVFVELGLLEEANECFSRMRNFRTLPKAR 255

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           + N +++ L + GN    R     M   G    P V+TY ++I   CK G     R+   
Sbjct: 256 SCNFLLHRLSKSGNGQLVRKFFNDMIGAGI--APSVFTYNVMIDYLCKEGDLENSRR--- 310

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
                   LF  M   G  PDVV YN LIDG  K   +E    LF++M   GC+P+ +TY
Sbjct: 311 --------LFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITY 362

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           N  I  Y    ++ +A E   +M+N N   P   +Y+ +I A C+ G +  A     ++ 
Sbjct: 363 NGLINCYCKFEKMPRAFEYFSEMKN-NGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMR 421

Query: 386 DGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIRDGI 424
             G +P E+TY  +    C A N  E   LL+D L+  ++  I
Sbjct: 422 RTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNI 464



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 111/260 (42%), Gaps = 27/260 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI   G+ G + E  + F  MK   C PD+  YN +IN  C+     +A     +M+  G
Sbjct: 330 LIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNG 389

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKA---IRR---------------------RIWE 270
            +  P+V TY+ LI ++CK GM  G  K    +RR                      + E
Sbjct: 390 LK--PNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTE 447

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L   ML  G   ++V Y  L+DG CK  R+  A E+F  M K G  PN+  Y + + 
Sbjct: 448 AWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVH 507

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            Y     ++ A++++++M   N   P    Y  II   C   ++ E +  L E+   G  
Sbjct: 508 GYIKAERMEDAMKILKQMTECNIK-PDLILYGSIIWGHCSQRKLEETKLILEEMKSRGIS 566

Query: 391 PREYTYKLVCDALNAAEEPS 410
                   + DA   A + S
Sbjct: 567 ANPVISTTIIDAYFKAGKSS 586



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 127/275 (46%), Gaps = 18/275 (6%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +++  +M   G    V T S   LI    +EG++  A+  F  M++    P+ + Y  +I
Sbjct: 379 FEYFSEMKNNGLKPNVVTYST--LIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLI 436

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           +A C+ GN  +A  LL  M   G +   ++ TYT L+   CK G           R+ EA
Sbjct: 437 DANCKAGNLTEAWKLLNDMLQAGVKL--NIVTYTALLDGLCKAG-----------RMIEA 483

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +FR ML  G  P+   Y  L+ G  K  R+E A+++   M +    P+ + Y S I  
Sbjct: 484 EEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 543

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSY-TPIIHALCEAGRVLEARDFLAELVDGGSV 390
           +    ++++   ++ +M+  + G+  +    T II A  +AG+  +A +F  E+ D G  
Sbjct: 544 HCSQRKLEETKLILEEMK--SRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVE 601

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
               TY ++ D L  A    L  D   + +  G++
Sbjct: 602 ATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQ 636



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 45/242 (18%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP----- 239
           + +A+    +M +   +PD+  Y  +I   C      + + +LE+M+  G    P     
Sbjct: 515 MEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTT 574

Query: 240 --DVY--------------------------TYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             D Y                          TY +LI   CK G+           +  A
Sbjct: 575 IIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGI-----------VELA 623

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
              F  ML  G  P+V  Y  LIDG CK   IE A +LFD+M  +G  P+   + + I  
Sbjct: 624 VDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDG 683

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                 + +A+ ++ +M  L         YT ++    + G + +AR F  E+++ G +P
Sbjct: 684 NLKHGNLQEALVLISRMTELAIEFDL-HVYTSLVSGFSQCGELHQARKFFNEMIEKGILP 742

Query: 392 RE 393
            E
Sbjct: 743 EE 744



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 16/223 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F  G +   L +F ++M   G    + T  V  LI  L + G+V  A+  F RM     +
Sbjct: 580 FKAGKSSDAL-NFFQEMQDVGVEATIVTYCV--LIDGLCKAGIVELAVDYFCRMLSLGLQ 636

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V  Y  +I+ LC+      A+ L ++M+  G    PD+  +T LI    K+G      
Sbjct: 637 PNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGM--TPDITAFTALIDGNLKHG------ 688

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + EA  L   M       D+  Y  L+ G  +   + +A + F++M +KG +P 
Sbjct: 689 -----NLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPE 743

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            V     +R Y    ++D+AIE+  +M+ +     +++   P+
Sbjct: 744 EVLCICLLREYYKRGQLDEAIELKNEMERMGLITESATMQFPV 786


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 124/265 (46%), Gaps = 17/265 (6%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           +S    G L    S T LI    E   V+EAL  F +M +  C P V  Y V+I ALC++
Sbjct: 263 LSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQL 322

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G   +A  + ++M      C P+V+TYT+LI S C+                +A  +   
Sbjct: 323 GRKTEALNMFKEMTEK--HCQPNVHTYTVLICSLCE-----------DSNFDDAKKILNG 369

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           ML KG +P VV YN LIDG CK      ALE+   M    C PN  TYN  I  +     
Sbjct: 370 MLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKN 429

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           I KA+ ++ KM       P   +Y  +IH  C+ G +  A   L+ + + G VP E+TY 
Sbjct: 430 IHKAMSLLHKMLE-RKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYS 488

Query: 398 LVCDAL---NAAEEPSLLDDGLRKR 419
           +  D L      EE   L + L+++
Sbjct: 489 VFIDTLCKRGLVEEARSLFESLKEK 513



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 160/376 (42%), Gaps = 41/376 (10%)

Query: 54  SIPRFFFQSPRSIGRQTGFRHRTPLRQ-RILKKEAY----NIANNVLVLGPAAYRDPQKV 108
           SI   FF SP S+ +     H  P +   IL +  +    ++ N +  + P+       +
Sbjct: 27  SITHRFFTSPASLPQSFSVEHDIPAQLFSILSRPNWQKHPSLKNLIPSIAPSHISALFAL 86

Query: 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEM-GIVFARG-------------------NNV 148
            L    A  F++W+ +   F HN  +   M  I+   G                    N 
Sbjct: 87  NLDPQTALAFFNWIGQKHGFKHNVQSHVSMLNILVPNGYLRIAENMRILMIKSTDSSENA 146

Query: 149 KGLWDFLKDMSRRGNGEL--VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
             + + L+ M+RR +     +T      L+ +L    +++E  + +  M      P+++ 
Sbjct: 147 LFVLEMLRSMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFT 206

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
            N ++N  C++GN  +A   + ++   G     D +TYT LI  YC+            +
Sbjct: 207 LNTMVNGYCKLGNVVEAELYVSKIVQAGLSL--DTFTYTSLILGYCR-----------NK 253

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            +  AN +F  M  KG + + V+Y  LI G C+  R++ AL+LF  M++  C P   TY 
Sbjct: 254 NVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYT 313

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             I     +    +A+ M ++M    H  P   +YT +I +LCE     +A+  L  +++
Sbjct: 314 VIIFALCQLGRKTEALNMFKEMTE-KHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLE 372

Query: 387 GGSVPREYTYKLVCDA 402
            G +P   TY  + D 
Sbjct: 373 KGLIPSVVTYNALIDG 388



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 120/273 (43%), Gaps = 18/273 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           N  T  E+ + F RG N+      L  M  R     V T ++  LI    +EG +  A  
Sbjct: 413 NARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNI--LIHGQCKEGDLGSAYK 470

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
               M +    PD + Y+V I+ LC+ G   +AR L E ++  G +   +   Y+ LI  
Sbjct: 471 LLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIK--ANEVIYSTLIDG 528

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           YCK G           ++ +   L   ML  G VP+ + YN LIDG CK    + A  L 
Sbjct: 529 YCKVG-----------KVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLV 577

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALC 369
           D M K+   P   TY   I      +E D+A +M  +M  L+ G  P    YT  IHA C
Sbjct: 578 DIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQM--LSTGSHPDVFIYTAFIHAYC 635

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             GR+ +A   + ++   G +P    Y L  DA
Sbjct: 636 SHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDA 668



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 113/261 (43%), Gaps = 16/261 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + +  +   LI    ++GL   AL     M+   C P+   YN +I   CR  N +KA
Sbjct: 374 GLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKA 433

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LL +M     +  P+V TY ILI   CK G            +  A  L  LM   G 
Sbjct: 434 MSLLHKMLERKLQ--PNVVTYNILIHGQCKEG-----------DLGSAYKLLSLMNESGL 480

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           VPD   Y+  ID  CK   +E A  LF+ + +KG   N V Y++ I  Y  V ++     
Sbjct: 481 VPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRF 540

Query: 344 MMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           ++ KM  L+ G VP S +Y  +I   C+     EAR  +  ++     P   TY ++ D 
Sbjct: 541 LLDKM--LSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDN 598

Query: 403 LNAAEEPSLLDDGLRKRIRDG 423
           L   +E     D   + +  G
Sbjct: 599 LLKDDEFDQAHDMFDQMLSTG 619



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 105/237 (44%), Gaps = 14/237 (5%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + +  I  L + GLV EA + F  +K+   + +   Y+ +I+  C+VG  +  RFLL++M
Sbjct: 486 TYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKM 545

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G  C P+  TY  LI  YCK            +   EA  L  +M+ +   P    Y
Sbjct: 546 LSAG--CVPNSITYNSLIDGYCK-----------EKNFKEARLLVDIMIKRDIEPAADTY 592

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LID   K    ++A ++FD M   G  P+   Y +FI  Y     +  A  ++ KM N
Sbjct: 593 TILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKM-N 651

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
               +P +  YT  I A    G +  A   L  + + G  P  YTY  +   L+ A+
Sbjct: 652 AKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAK 708



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 104/282 (36%), Gaps = 29/282 (10%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T  I      G + +A     +M      PD   Y + I+A  R G+ + A  +L++M  
Sbjct: 628 TAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHE 687

Query: 233 PGFRCPPDVYTYTILISSYCK----------------YGMQTGCRKAIRRRI-WEAN-HL 274
            G  C P  YTY+ LI                      G+ +       RR+ +E    L
Sbjct: 688 VG--CEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDL 745

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           F  M   G  P+   Y   I G CK   +E A  LFD M +KG  PN   YNS +     
Sbjct: 746 FGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQ 805

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
           +    +AI  +  M   N  +P   S   ++  L + G   +A+      +       E 
Sbjct: 806 LGLYGEAIRWLDIMIE-NRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEM 864

Query: 395 TYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKP 436
            +K++ D         LL  GL  +  D       Q  ++ P
Sbjct: 865 VWKVLIDG--------LLKKGLSDKCSDLFGIMETQGCQIHP 898


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/247 (34%), Positives = 125/247 (50%), Gaps = 19/247 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + LI    +EG V EA      M +   + DV  YN +++  C V   NKA+ L   M
Sbjct: 270 TFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVM 329

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PDV++Y+I+I+ +CK  M           + EA  LF  M  K   P+VV Y
Sbjct: 330 AQRGV--TPDVWSYSIMINGFCKIKM-----------VDEAMKLFEEMHCKQIFPNVVTY 376

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L+DG CK+ R   ALEL D+M+ +G   N +TYNS +      N +DKAI ++ K++ 
Sbjct: 377 NSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIK- 435

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
              G+ P   +YT +I+ LC+ GR+ +A+    +L+  G  P  YTY      +N     
Sbjct: 436 -EKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYT---SLINGFCNK 491

Query: 410 SLLDDGL 416
              D+GL
Sbjct: 492 GFFDEGL 498



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 13/174 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L + G  + AL     M       ++  YN +++A+C+  + +KA  LL +++  G
Sbjct: 379 LVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKG 438

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PD++TYT+LI+  CK G           R+ +A  +F  +L KG+ P++  Y  LI
Sbjct: 439 IQ--PDIFTYTVLINGLCKVG-----------RLDDAQKVFEDLLVKGYSPNIYTYTSLI 485

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           +G C     +  L +   M   GCIPN +TY   I      +E DKA +++R+M
Sbjct: 486 NGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREM 539



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 112/235 (47%), Gaps = 20/235 (8%)

Query: 172 VTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           +TC  L+    + G +  + + F ++ +    PD   + ++I  LC  G  +KA +  ++
Sbjct: 94  ITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDK 153

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           +   GF+   D  +Y  LI+  C+ G      + +RR       L R        P+VV 
Sbjct: 154 VVAQGFQL--DQVSYGTLINGLCRVGETKAAVQLLRRV---DGKLVR--------PNVVM 200

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM- 348
           Y+ +ID  CK   +  A +L+ +M  K   P+ VTY+S I  + VV ++  A+++  +M 
Sbjct: 201 YSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMI 260

Query: 349 -QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             N+N   P   +++ +I   C+ G+V EA++ LA ++         TY  + D 
Sbjct: 261 SDNIN---PNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDG 312



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 14/223 (6%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P    +  ++ +L +   +  A  L +QME  G +  PD  T  +L++ + + G      
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIK--PDFITCNLLMNCFSQLG------ 107

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I  +  +F  +L KG+ PD V +  LI G C    + +AL   D +  +G   +
Sbjct: 108 -----HIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLD 162

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           +V+Y + I     V E   A++++R++       P    Y+ II ++C+   V +A D  
Sbjct: 163 QVSYGTLINGLCRVGETKAAVQLLRRVDG-KLVRPNVVMYSTIIDSMCKDKLVNDAFDLY 221

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
            E+V     P   TY  +        +     D   + I D I
Sbjct: 222 CEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNI 264


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/252 (34%), Positives = 120/252 (47%), Gaps = 17/252 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S T LI  L E G +NEAL  F  M +  C P V  Y V+I AL   G   +A  L  +M
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEM 325

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  G  C P+V+TYT+LI   CK             ++ EA  +   M  KG +P VV Y
Sbjct: 326 KEKG--CEPNVHTYTVLIDGLCK-----------ENKMDEARKMLSEMSEKGLIPSVVTY 372

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LIDG CK   I+ A E+ D M    C PN  TYN  I       ++ KA+ ++ KM  
Sbjct: 373 NALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE 432

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAE 407
                P+  +Y  +IH  C+   +  A   L+ + + G VP ++TY +  D L      E
Sbjct: 433 RKLS-PSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVE 491

Query: 408 EPSLLDDGLRKR 419
           E   L D ++ +
Sbjct: 492 EAGTLFDSVKAK 503



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 111/235 (47%), Gaps = 14/235 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LI  L   G   EAL  F  MK+  C P+V+ Y V+I+ LC+    ++AR +L
Sbjct: 298 TVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKML 357

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            +M   G    P V TY  LI  YCK GM           I +A  +  LM      P+ 
Sbjct: 358 SEMSEKGL--IPSVVTYNALIDGYCKEGM-----------IDDAFEILDLMESNSCGPNT 404

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             YN LI G CK  ++ +A+ L + M ++   P+ +TYNS I     VN+++ A  ++  
Sbjct: 405 RTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSL 464

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           M N N  VP   +Y+  I  LC+ GRV EA      +   G    E  Y  + D 
Sbjct: 465 M-NENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDG 518



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 114/246 (46%), Gaps = 16/246 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L +MS +G    V T +   LI    +EG++++A      M+   C P+   YN +I  
Sbjct: 356 MLSEMSEKGLIPSVVTYNA--LIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICG 413

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+    +KA  LL +M     +  P + TY  LI   CK              +  A  
Sbjct: 414 LCKKRKVHKAMALLNKM--LERKLSPSLITYNSLIHGQCKV-----------NDLESAYR 460

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L  LM   G VPD   Y+  ID  CK  R+E A  LFD +  KG   N V Y + I  Y 
Sbjct: 461 LLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYC 520

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
            V +ID A  ++ +M N +  +P S +Y  +I  LC+  ++ EA   +A+++  G  P  
Sbjct: 521 KVGKIDVAYSLLERMLN-DACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTV 579

Query: 394 YTYKLV 399
            TY ++
Sbjct: 580 VTYTIL 585



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 107/212 (50%), Gaps = 14/212 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+ A   F  M Q  C+ +  +Y  +I+ LC  G  N+A  L   M      C P V TY
Sbjct: 245 VDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTED--NCCPTVRTY 302

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T+LI     Y +    RK       EA +LF  M  KG  P+V  Y  LIDG CK  +++
Sbjct: 303 TVLI-----YALSGSGRKV------EALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMD 351

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A ++  +M++KG IP+ VTYN+ I  Y     ID A E++  M++ + G P + +Y  +
Sbjct: 352 EARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCG-PNTRTYNEL 410

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           I  LC+  +V +A   L ++++    P   TY
Sbjct: 411 ICGLCKKRKVHKAMALLNKMLERKLSPSLITY 442



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 140/321 (43%), Gaps = 44/321 (13%)

Query: 104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWD---------- 153
           DPQ        A  F++W+     F HN  +   M  +  R   + G+ +          
Sbjct: 80  DPQT-------ALSFFNWIALRPGFKHNVHSYSSMLNILIRAR-LLGVAEKIRISMIKSC 131

Query: 154 -------FLKDMSRRGN--GELVTTSSVTC---LIKVLGEEGLVNEALATFYRMKQFRCR 201
                  F+ ++ R+ N  GE     ++ C   ++  L +  L++E    +  +   +  
Sbjct: 132 CSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQIS 191

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++Y +N ++N  C++GN  +A     ++   G    PD +TYT LI  +C+        
Sbjct: 192 PNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLH--PDTFTYTSLILGHCR-------- 241

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               + +  A  +F +M  KG   + V+Y  LI G C+  RI  AL+LF DM +  C P 
Sbjct: 242 ---NKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPT 298

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TY   I   S      +A+ +  +M+      P   +YT +I  LC+  ++ EAR  L
Sbjct: 299 VRTYTVLIYALSGSGRKVEALNLFNEMKE-KGCEPNVHTYTVLIDGLCKENKMDEARKML 357

Query: 382 AELVDGGSVPREYTYKLVCDA 402
           +E+ + G +P   TY  + D 
Sbjct: 358 SEMSEKGLIPSVVTYNALIDG 378



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 116/262 (44%), Gaps = 22/262 (8%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N+++  +  L  M+   NG +    + +  I  L +EG V EA   F  +K    + +  
Sbjct: 453 NDLESAYRLLSLMNE--NGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEV 510

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            Y  +I+  C+VG  + A  LLE+M      C P+ YTY +LI   CK            
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERM--LNDACLPNSYTYNVLIEGLCK-----------E 557

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           +++ EA+ L   ML  G  P VV Y  LI    K    + AL++F+ M   G  P+  TY
Sbjct: 558 KKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTY 617

Query: 326 NSFIRYY---SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
            +F+  Y    ++ E+D  I  M    N    +P   +YT +I      G    A DFL 
Sbjct: 618 TAFLHAYFSQGMLEEVDDVIAKM----NEEGILPDLVTYTVLIDGYARLGLTHRAFDFLK 673

Query: 383 ELVDGGSVPREYTYKLVCDALN 404
            +VD G  P  Y   ++   L+
Sbjct: 674 CMVDTGCKPSLYIVSILIKNLS 695



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 17/218 (7%)

Query: 189 LATFYRMK---QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           L  F +M    +F+ +P +  YN ++ +L +    ++ + +   +EL   +  P++YT+ 
Sbjct: 141 LEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTV--YLELLNNQISPNIYTFN 198

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            +++ YCK G            + EA      ++  G  PD   Y  LI G C+   ++ 
Sbjct: 199 AMVNGYCKIG-----------NVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDN 247

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A E+F  M +KGC  N V+Y + I        I++A+++   M   ++  PT  +YT +I
Sbjct: 248 AYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTE-DNCCPTVRTYTVLI 306

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +AL  +GR +EA +   E+ + G  P  +TY ++ D L
Sbjct: 307 YALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGL 344



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 109/278 (39%), Gaps = 45/278 (16%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LI  + ++G  + AL  F  M     +PDV  Y   ++A    G   +   ++
Sbjct: 578 TVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVI 637

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM------------QTGCRKAI----------- 264
            +M   G    PD+ TYT+LI  Y + G+             TGC+ ++           
Sbjct: 638 AKMNEEGIL--PDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLS 695

Query: 265 -RRRIWE------------------ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
              R+ E                  A  LF  M+  G   DV  Y  LI G C+  R+E 
Sbjct: 696 HENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEE 755

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A  L   M ++G  P+   YNS +     +    +A+ ++  M   N  +P   SY  ++
Sbjct: 756 AQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVE-NGLLPLLESYKLLV 814

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             L   G   +A+     L+  G    E  +K++ D L
Sbjct: 815 CGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGL 852



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 89/231 (38%), Gaps = 46/231 (19%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE-------------- 187
           +AR       +DFLK M   G    +   S+  LIK L  E  + E              
Sbjct: 659 YARLGLTHRAFDFLKCMVDTGCKPSLYIVSI--LIKNLSHENRMKETRSEIGIDSVSNTL 716

Query: 188 ----ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
               AL  F +M +  C  DV  Y  +I   C+     +A+ L+  M+  G     D+Y 
Sbjct: 717 EYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYN 776

Query: 244 YTILISSYCKYGM------------QTG------------CRKAIRRRIWEANHLFRLML 279
              L+   CK G+            + G            C   I     +A  +F  +L
Sbjct: 777 S--LLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLL 834

Query: 280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
             G+  D VA+  LIDG  K   ++   EL D M +KGC PN +TY+  I 
Sbjct: 835 SCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIE 885


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 14/216 (6%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A+  +  MK   C PD + YN++I++LC  G   +A  LL++ME+ G  C  +V TY  L
Sbjct: 425 AMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSG--CARNVITYNTL 482

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I  +CK            +RI EA  +F  M  +G   + V YN LIDG CK+ R+E A 
Sbjct: 483 IDGFCK-----------NKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEAS 531

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           +L D M  +G  P++ TYNS + Y+    +I KA ++++ M + +   P   +Y  +I  
Sbjct: 532 QLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMAS-DGCEPDIVTYGTLIAG 590

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           LC+AGRV  A   L  +   G     + Y  V  AL
Sbjct: 591 LCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQAL 626



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 131/283 (46%), Gaps = 15/283 (5%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   ++    F+++MS R  G      +   L+  L + G V  AL     M +    
Sbjct: 275 FCKEGRIEEALRFIEEMSLR-EGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFD 333

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+Y YN +I+ LC++G  ++A  +L QM      C P+  TY  +IS+ CK        
Sbjct: 334 PDIYTYNSLISGLCKLGEVDEAVKVLNQM--IERDCSPNTVTYNTIISTLCK-------- 383

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  L  ++  KG +PDV  YN LI G C +     A+EL+ +M  KGC P+
Sbjct: 384 ---ENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPD 440

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TYN  I       ++ +A+ ++++M+ ++       +Y  +I   C+  R+ EA +  
Sbjct: 441 EFTYNMLIDSLCFRGKLQEALNLLKEME-VSGCARNVITYNTLIDGFCKNKRIAEAEEIF 499

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
            ++   G      TY  + D L  +E        + + I +G+
Sbjct: 500 DQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGL 542



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 28/228 (12%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----- 255
           RPDV  +N++I ALCR      A  L+E+ME   F   PD  T+T ++  + + G     
Sbjct: 192 RPDVSTFNILIKALCRAHQIRPAILLMEEME--DFGLLPDEKTFTTIMQGFIEEGNLDGA 249

Query: 256 -------MQTGCRKAI------------RRRIWEANHLFRLM-LFKGFVPDVVAYNCLID 295
                  ++ GC                  RI EA      M L +GF PD   +N L++
Sbjct: 250 MRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVN 309

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G  KT  ++ ALE+ D M ++G  P+  TYNS I     + E+D+A++++ +M   +   
Sbjct: 310 GLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCS- 368

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           P + +Y  II  LC+  +V EA      L   G +P   TY  +   L
Sbjct: 369 PNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGL 416



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 118/242 (48%), Gaps = 17/242 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + T +++   EEG ++ A+    +M +  C       NV++N  C+ G   +A
Sbjct: 225 GLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEA 284

Query: 224 RFLLEQMEL-PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
              +E+M L  GF   PD YT+ +L++   K G            +  A  +  +ML +G
Sbjct: 285 LRFIEEMSLREGFF--PDKYTFNMLVNGLSKTG-----------HVKHALEVMDMMLREG 331

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
           F PD+  YN LI G CK   ++ A+++ + M ++ C PN VTYN+ I      N++++A 
Sbjct: 332 FDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEAT 391

Query: 343 EMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           ++   +     G+ P   +Y  +I  LC +     A +   E+   G  P E+TY ++ D
Sbjct: 392 KLALVLT--GKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLID 449

Query: 402 AL 403
           +L
Sbjct: 450 SL 451



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 17/252 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + LK+M   G    V T +   LI    +   + EA   F +M+      +   YN +I+
Sbjct: 462 NLLKEMEVSGCARNVITYNT--LIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLID 519

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+     +A  L++QM + G R  PD +TY  L++ +CK G            I +A 
Sbjct: 520 GLCKSERVEEASQLMDQMIMEGLR--PDKFTYNSLLTYFCKAG-----------DIKKAA 566

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            + + M   G  PD+V Y  LI G CK  R+E A +L   +  KG       YN  I+  
Sbjct: 567 DIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQAL 626

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR-VLEARDFLAELVDGGSVP 391
                  +A+ + R+M       P + +Y  +   LC+ G  + EA DF+ E+++ G VP
Sbjct: 627 FRRKRSKEAVRLFREMIEKAEA-PDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVP 685

Query: 392 REYTYKLVCDAL 403
              ++ ++ + L
Sbjct: 686 EFSSFYMLAEGL 697



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 126/289 (43%), Gaps = 42/289 (14%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           ++  KQ   +P    +  V++ L + G F+  + +L++M++       D  +  + I SY
Sbjct: 77  YWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDND--SLLVFIESY 134

Query: 252 CKYGMQTGCRKAIRRRIWE----AN-HLFRL--------------------MLFKGFVPD 286
             +G+     + +     E    AN H +                      M+ +G  PD
Sbjct: 135 ASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPD 194

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           V  +N LI   C+ ++I  A+ L ++M   G +P+  T+ + ++ +     +D A  M  
Sbjct: 195 VSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGA--MRV 252

Query: 347 KMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAEL-VDGGSVPREYTYKLVCDALN 404
           K Q +  G V T+ +   +++  C+ GR+ EA  F+ E+ +  G  P +YT+ ++ + L+
Sbjct: 253 KEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLS 312

Query: 405 AAEEPSLLDDGLRKRIRDGIE---YRFRQVMKVKPIMKHKELLKCGEID 450
                    + +   +R+G +   Y +  ++          L K GE+D
Sbjct: 313 KTGHVKHALEVMDMMLREGFDPDIYTYNSLI--------SGLCKLGEVD 353



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 79/221 (35%), Gaps = 65/221 (29%)

Query: 167 VTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           V+ +SVT   LI  L +   V EA     +M     RPD + YN ++   C+ G+  KA 
Sbjct: 507 VSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAA 566

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR------------------- 265
            +++ M   G  C PD+ TY  LI+  CK G      K +R                   
Sbjct: 567 DIVQTMASDG--CEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQ 624

Query: 266 -----RRIWEANHLFRLMLFK------------------------------------GFV 284
                +R  EA  LFR M+ K                                    G+V
Sbjct: 625 ALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYV 684

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFD-DMNKKGCIPNRVT 324
           P+  ++  L +G      +   ++L D  M K     N VT
Sbjct: 685 PEFSSFYMLAEGLFSLAMVGTLIKLIDMVMEKAKFSDNEVT 725


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L ++  V EA   F  M      PD++ YN +I+ALC +  +     LL +M    
Sbjct: 296 IIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM--VN 353

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P+V  ++ ++ + CK GM           I  A+ +  +M+ +G  PDVV Y  L+
Sbjct: 354 SKIMPNVVVFSTVVDALCKEGM-----------IAIAHDVVDMMIKRGVEPDVVTYTALM 402

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG C    ++ A+++FD M  KGC+PN  +YN  I  Y  +  +DKA+ ++ +M +L   
Sbjct: 403 DGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQM-SLQGL 461

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  + +Y  +IH LC  GR+  A     E+V  G +P   TY+++ D L
Sbjct: 462 IADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 510



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 123/266 (46%), Gaps = 29/266 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL++F RM      P    +  ++ ++ ++ +++    L  QM+   F  PPDVYT 
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMD--SFGIPPDVYTL 188

Query: 245 TILISSYC---KYG---------MQTGCRK------------AIRRRIWEANHLFRLMLF 280
            ILI+S+C   + G         ++ GC+              +  +I EA HLF   + 
Sbjct: 189 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 248

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +GF PDVV Y  L++G CK      A+ L   M +K C PN + YN+ I       ++ +
Sbjct: 249 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTE 308

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A  +  +M  +  G+ P   +Y  +IHALC           L E+V+   +P    +  V
Sbjct: 309 AFNLFSEM--ITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTV 366

Query: 400 CDALNAAEEPSLLDDGLRKRIRDGIE 425
            DAL      ++  D +   I+ G+E
Sbjct: 367 VDALCKEGMIAIAHDVVDMMIKRGVE 392



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 18/233 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + ++  L +EG++  A      M +    PDV  Y  +++  C     ++A  + + M  
Sbjct: 364 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVH 423

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C P+V +Y ILI+ YC+            +R+ +A  L   M  +G + D V YN 
Sbjct: 424 KG--CVPNVRSYNILINGYCQI-----------QRMDKAMGLLEQMSLQGLIADTVTYNT 470

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ--N 350
           LI G C   R++ A+ LF +M   G IP+ VTY   + Y    + + +A+ +++ ++  N
Sbjct: 471 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 530

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           L+  +     Y   I  +C AG +  ARD  + L   G  P   TY ++   L
Sbjct: 531 LDADILV---YNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGL 580



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 111/255 (43%), Gaps = 26/255 (10%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  I  A         D +  M +RG    V T +       L  E  ++EA+  F  
Sbjct: 371 CKEGMIAIAH--------DVVDMMIKRGVEPDVVTYTALMDGHCLRSE--MDEAVKVFDT 420

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M    C P+V +YN++IN  C++   +KA  LLEQM L G     D  TY  LI   C  
Sbjct: 421 MVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL--IADTVTYNTLIHGLCHV 478

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           R+  A  LF  M+  G +PD+V Y  L+D  CK + +  A+ L   + 
Sbjct: 479 G-----------RLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIE 527

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGR 373
                 + + YN  I       E++ A ++   + +   G+ P   +Y  +IH LC+ G 
Sbjct: 528 GSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSS--KGLQPDVRTYNIMIHGLCKRGL 585

Query: 374 VLEARDFLAELVDGG 388
           + EA     ++ + G
Sbjct: 586 LDEANKLFRKMDENG 600



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 17/212 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L+ MS +G   +  T +   LI  L   G +  A+A F+ M      PD+  Y ++++ 
Sbjct: 452 LLEQMSLQG--LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDY 509

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+  +  +A  LL+ +E  G     D+  Y I I   C+ G            +  A  
Sbjct: 510 LCKNHHLAEAMVLLKAIE--GSNLDADILVYNIAIDGMCRAG-----------ELEAARD 556

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF  +  KG  PDV  YN +I G CK   ++ A +LF  M++ GC  +   YN+ IR + 
Sbjct: 557 LFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFL 616

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
             NE   A +++++M  L  G     S T +I
Sbjct: 617 RSNETFGATQLLQEM--LAEGFSADVSTTTLI 646



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 14/160 (8%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EA+     ++      D+  YN+ I+ +CR G    AR L   +   G +  PDV TY I
Sbjct: 518 EAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQ--PDVRTYNI 575

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           +I   CK G+           + EAN LFR M   G   D   YN +I G  ++     A
Sbjct: 576 MIHGLCKRGL-----------LDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGA 624

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            +L  +M  +G   +  T    +   S  + +D++ E +R
Sbjct: 625 TQLLQEMLAEGFSADVSTTTLIVEMLS-DDGLDQSFERLR 663


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 150/326 (46%), Gaps = 28/326 (8%)

Query: 103  RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
            R+  K  +G+N   +F+ W  +  ++ H+  T   +            +W  +++M R  
Sbjct: 1084 REVMKTDVGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNP 1143

Query: 163  NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
               +VT + ++ ++++LG   +V +A+  FY++K  +C+P   AYN +I  L   G + K
Sbjct: 1144 IC-VVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEK 1202

Query: 223  ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR----------RIWE-- 270
               L  +M   G  C PD  TY+ LIS++CK G +    + +            +I+   
Sbjct: 1203 VHQLYNEMSTEG-HCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTML 1261

Query: 271  ------------ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                        A  LF  M  +   PDV  Y  LI G  K  RI+ A   F +M ++GC
Sbjct: 1262 IALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGC 1321

Query: 319  IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLEA 377
             P+ V  N+ I +      +D A+++ ++M+ L   +P+  +Y  II AL E+  R  E 
Sbjct: 1322 RPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLR-CIPSVVTYNTIIKALFESKSRASEV 1380

Query: 378  RDFLAELVDGGSVPREYTYKLVCDAL 403
              +   + + G  P  +TY ++ D  
Sbjct: 1381 PSWFERMKESGISPSSFTYSILIDGF 1406



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 115/244 (47%), Gaps = 16/244 (6%)

Query: 173  TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
            T LI+ LG+ G ++EA   F  M++  CRPD    N +IN L + G  + A  L ++ME 
Sbjct: 1294 TELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMET 1353

Query: 233  PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
               RC P V TY  +I +  +           + R  E    F  M   G  P    Y+ 
Sbjct: 1354 --LRCIPSVVTYNTIIKALFES----------KSRASEVPSWFERMKESGISPSSFTYSI 1401

Query: 293  LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
            LIDG CKT R+E+A+ L ++M++KG  P    Y S I         D A E+ ++++  N
Sbjct: 1402 LIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE-N 1460

Query: 353  HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
             G  ++  Y  +I  L +AGR+ +A +   E+   G  P  Y Y  +   L       +L
Sbjct: 1461 CGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLART---GML 1517

Query: 413  DDGL 416
            D+ L
Sbjct: 1518 DEAL 1521



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 112/255 (43%), Gaps = 28/255 (10%)

Query: 175  LIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +IK L E +   +E  + F RMK+    P  + Y+++I+  C+     KA  LLE+M+  
Sbjct: 1366 IIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEK 1425

Query: 234  GFRCPPDVYTYTILISSYCKYG-----------MQTGCRKAIRR-------------RIW 269
            GF  PP    Y  LI +  K             ++  C  +  R             R+ 
Sbjct: 1426 GF--PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLD 1483

Query: 270  EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            +A ++F  M   G  PDV AYN L+ G  +T  ++ AL     M + GCIP+  +YN  +
Sbjct: 1484 DAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIIL 1543

Query: 330  RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
               +      +A+EM+  M+  +   P   SY  ++ AL  AG   EA   + E+   G 
Sbjct: 1544 NGLAKTGGPHRAMEMLSNMKQ-STVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGF 1602

Query: 390  VPREYTYKLVCDALN 404
                 TY  + +A+ 
Sbjct: 1603 EYDLITYSSILEAIG 1617



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 163  NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
            +G +   +S   ++  L + G  + A+     MKQ   RPDV +YN V+ AL   G F +
Sbjct: 1530 HGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEE 1589

Query: 223  ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            A  L+++M   GF    D+ TY+ ++ +  K
Sbjct: 1590 ASKLMKEMNTLGFEY--DLITYSSILEAIGK 1618


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 121/260 (46%), Gaps = 30/260 (11%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T  I  L + G V +AL     M +  C PDV ++N VIN LC+    ++A  LL  ME 
Sbjct: 332 TVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEA 391

Query: 233 PGFRCPPDVYTYTILISSYCKYG------------MQTG---------------CRKAIR 265
            G  C P+  ++  LI   C+ G            ++ G               C+    
Sbjct: 392 KG--CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQE 449

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            RI EA  LF  M+ KG VPDVV Y+ LIDG  K  +++ A  L   M  KGCIPN  TY
Sbjct: 450 GRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTY 509

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           NS I     ++++D+A+E+   M      VP + +Y  II ALC+   V +A       +
Sbjct: 510 NSLISGLCGLDKVDEALELFVAMVE-KGCVPDTITYGTIISALCKQEMVDKALALFDGSL 568

Query: 386 DGGSVPREYTYKLVCDALNA 405
           + G VP    Y  + D L A
Sbjct: 569 EAGVVPTSGMYFSLIDGLCA 588



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 122/251 (48%), Gaps = 22/251 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L  E  V+EAL  F  + +    P+V  YN++I+ L +    N+A  L   +
Sbjct: 260 SYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL 319

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PD  TYT+ I   CK G           R+ +A  + + M  KG VPDVV++
Sbjct: 320 VKHGLE--PDAITYTVFIDGLCKAG-----------RVEDALLMLKDMDEKGCVPDVVSH 366

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N +I+G CK  R++ A  L   M  KGC PN +++N+ I       +  KA+   ++M  
Sbjct: 367 NAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEM-- 424

Query: 351 LNHGV-PTSSSYTPIIHALCEA---GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           L  GV PT  +Y  ++  LC+A   GR+ EA      +++ G VP   TY  + D L  A
Sbjct: 425 LKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKA 484

Query: 407 EEPSLLDDGLR 417
            +   LDD  R
Sbjct: 485 GK---LDDARR 492



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 107/201 (53%), Gaps = 17/201 (8%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D+  +N+ I+ LCR      A+ + + M   GF   P+  TY  L+S  C  G       
Sbjct: 49  DISTFNIYISGLCRASRIGDAQTVFDGMRKHGFW--PNRITYNALLSGLCNGG------- 99

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               R+ +A  L+  M+  G+ PDVV YN L+ G CK  +++ AL++FD   K+G +P+ 
Sbjct: 100 ----RMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDV 155

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           VTYN+ I  +   +++D+A  ++++M + +  VP   +Y  +++ LC+ GRV EAR    
Sbjct: 156 VTYNALINGFCKADKLDEAQRILQRMVSESL-VPDVVTYNSLVNGLCKNGRVDEARML-- 212

Query: 383 ELVDGGSVPREYTYKLVCDAL 403
            +VD G  P   TY  +   L
Sbjct: 213 -IVDKGFSPNVITYSTLISGL 232



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 21/239 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA     RM      PDV  YN ++N LC+ G  ++AR L+      GF   P+V TY
Sbjct: 171 LDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGF--SPNVITY 225

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           + LIS  C+            RR+  A  L   M+  G  PD+V+YN LI G  +   + 
Sbjct: 226 STLISGLCRE----------LRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVS 275

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            AL+LF  + ++G  P   TYN  I      + +++A E+   +  + HG+ P + +YT 
Sbjct: 276 EALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL--VKHGLEPDAITYTV 333

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLLDDGLRKR 419
            I  LC+AGRV +A   L ++ + G VP   ++  V + L      +E  +L  G+  +
Sbjct: 334 FIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAK 392



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 112/235 (47%), Gaps = 22/235 (9%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C+PD+ +YN +I+ L R    ++A  L   +   G+   P+V TY ILI    K      
Sbjct: 254 CKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYE--PEVPTYNILIDGLLK------ 305

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  R+ EA  LF  ++  G  PD + Y   IDG CK  R+E AL +  DM++KGC+
Sbjct: 306 -----EDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCV 360

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ V++N+ I        +D+A  ++  M+      P + S+  +I   C AG+  +A  
Sbjct: 361 PDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCS-PNAISFNTLICGQCRAGKWKKAMT 419

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAA-------EEPSLLDDGLRK-RIRDGIEY 426
              E++  G  P   TY ++ D L  A       E  +L D  + K R+ D + Y
Sbjct: 420 TFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTY 474



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 18/230 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L   G +++A A + RM +    PDV  YN +++  C+VG  ++A  + +     G
Sbjct: 91  LLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRG 150

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F   PDV TY  LI+ +CK             ++ EA  + + M+ +  VPDVV YN L+
Sbjct: 151 F--VPDVVTYNALINGFCK-----------ADKLDEAQRILQRMVSESLVPDVVTYNSLV 197

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS-VVNEIDKAIEMMRKMQNLNH 353
           +G CK  R++ A  L  D   KG  PN +TY++ I      +  ++ A +++ KM  LN 
Sbjct: 198 NGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCRELRRLESARQLLEKMV-LNG 253

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P   SY  +IH L     V EA      ++  G  P   TY ++ D L
Sbjct: 254 CKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGL 303



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 20/221 (9%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + +A   F  M++    P+   YN +++ LC  G  + A+ L E+M   G+   PDV TY
Sbjct: 66  IGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGY--SPDVVTY 123

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L+  +CK G           ++ EA  +F   + +GFVPDVV YN LI+G CK  +++
Sbjct: 124 NTLLHGFCKVG-----------KLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLD 172

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A  +   M  +  +P+ VTYNS +        +D+A     +M  ++ G  P   +Y+ 
Sbjct: 173 EAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEA-----RMLIVDKGFSPNVITYST 227

Query: 364 IIHALCEAGRVLE-ARDFLAELVDGGSVPREYTYKLVCDAL 403
           +I  LC   R LE AR  L ++V  G  P   +Y  +   L
Sbjct: 228 LISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGL 268



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 99/196 (50%), Gaps = 22/196 (11%)

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLG-----EEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           K+M +RG    V  + VT  I V G     +EG + EA+  F  M +    PDV  Y+ +
Sbjct: 422 KEMLKRG----VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSAL 477

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           I+ L + G  + AR LL  ME  G  C P+VYTY  LIS  C  G+          ++ E
Sbjct: 478 IDGLGKAGKLDDARRLLGAMEAKG--CIPNVYTYNSLISGLC--GLD---------KVDE 524

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  LF  M+ KG VPD + Y  +I   CK   +++AL LFD   + G +P    Y S I 
Sbjct: 525 ALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLID 584

Query: 331 YYSVVNEIDKAIEMMR 346
               V  +D+A+++++
Sbjct: 585 GLCAVARVDEALKLLQ 600



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 16/179 (8%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD YT  IL+ S  K G           +I +A+     +L KG   D+  +N  I G C
Sbjct: 14  PDAYTVGILLRSLLKSG-----------KIEKAHRFVEQLLVKGLC-DISTFNIYISGLC 61

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           +  RI  A  +FD M K G  PNR+TYN+ +        +  A  +  +M    +  P  
Sbjct: 62  RASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYS-PDV 120

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
            +Y  ++H  C+ G++ EA       V  G VP   TY  + +    A++   LD+  R
Sbjct: 121 VTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADK---LDEAQR 176


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 135/262 (51%), Gaps = 18/262 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R   +K   + L +MSR+G   +    +   L+    +EG  ++AL     M +    
Sbjct: 63  LCRDGRLKETSEVLVEMSRKG--YVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLS 120

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V  Y  +IN++C+ GN N+A    +QM + G  CP +  TYT +I+ + + G+     
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGL-CPNE-RTYTTIINGFAQQGL----- 173

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + EA  +   M   GF+P +V YN LI+G C   R+E A+ L  DM  KG +P+
Sbjct: 174 ------LDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPD 227

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            V+Y++ I  ++   E+D+A +M  K++ +   V P + +Y+ +I  LCE  R+ EA D 
Sbjct: 228 VVSYSTIISGFARNQELDRAFQM--KVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDM 285

Query: 381 LAELVDGGSVPREYTYKLVCDA 402
             E++     P E+TY  + +A
Sbjct: 286 FQEMLTIKLPPDEFTYTTLINA 307



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 116/255 (45%), Gaps = 16/255 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           F K+M R  NG L    +   +I    +    +EA      M      P++  +N++IN 
Sbjct: 5   FFKEMER--NGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIING 62

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LCR G   +   +L +M   G+   PD  TY  L++ YCK G              +A  
Sbjct: 63  LCRDGRLKETSEVLVEMSRKGY--VPDEVTYNTLVNGYCKEG-----------NFHQALV 109

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L   M+  G  P+VV Y  LI+  CK   + RA+E FD M+ +G  PN  TY + I  ++
Sbjct: 110 LHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFA 169

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
               +D+A  ++ +M      +P+  +Y  +I+  C  GR+ EA   L ++V  G +P  
Sbjct: 170 QQGLLDEAYRVLNEMTRSGF-IPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDV 228

Query: 394 YTYKLVCDALNAAEE 408
            +Y  +       +E
Sbjct: 229 VSYSTIISGFARNQE 243



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 112/237 (47%), Gaps = 18/237 (7%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
            L  F  M++  C P+V  YN +I+  C++   ++A   L  M L G    P++ T+ ++
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLE--PNLITFNMI 59

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I+  C+ G           R+ E + +   M  KG+VPD V YN L++G CK     +AL
Sbjct: 60  INGLCRDG-----------RLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQAL 108

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
            L  +M + G  PN VTY S I        +++A+E   +M  +    P   +YT II+ 
Sbjct: 109 VLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMH-VRGLCPNERTYTTIING 167

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA---LNAAEEP-SLLDDGLRKRI 420
             + G + EA   L E+   G +P   TY  + +    L   EE   LL D + K +
Sbjct: 168 FAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGV 224



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 114/265 (43%), Gaps = 31/265 (11%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L+DM   G G L    S + +I        ++ A      M      PD   Y+ +I  
Sbjct: 215 LLQDMV--GKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQG 272

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC      +A  + ++M     + PPD +TYT LI++YCK G            + +A H
Sbjct: 273 LCEQRRLTEACDMFQEM--LTIKLPPDEFTYTTLINAYCKEG-----------DLNKALH 319

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI---- 329
           L   M+ KGF+PD V YN LI+G  K  R + A  L   +     IP+ VTYN+ I    
Sbjct: 320 LHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCC 379

Query: 330 -----------RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
                      + + +   +D+A ++   M N NH  P  + Y  IIH  C  G VL+A 
Sbjct: 380 NIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHK-PNEAIYNVIIHGHCRIGNVLKAY 438

Query: 379 DFLAELVDGGSVPREYTYKLVCDAL 403
               E+V    VP   T   +  AL
Sbjct: 439 KLYKEMVHVDFVPHTVTVLALVKAL 463



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 31/239 (12%)

Query: 164 GELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+ V   +VT   LI+ L E+  + EA   F  M   +  PD + Y  +INA C+ G+ N
Sbjct: 256 GKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLN 315

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           KA  L ++M   GF   PD  TY +LI+         G  K  R +  EA  L   + + 
Sbjct: 316 KALHLHDEMIQKGFL--PDAVTYNVLIN---------GLNKQARSK--EARRLLLKLFYD 362

Query: 282 GFVPDVVAYNCLIDGCCKTY---------------RIERALELFDDMNKKGCIPNRVTYN 326
             +P  V YN LI+ CC                   ++ A ++F+ M  K   PN   YN
Sbjct: 363 DSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYN 422

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
             I  +  +  + KA ++ ++M +++  VP + +   ++ AL   G   E  + + +++
Sbjct: 423 VIIHGHCRIGNVLKAYKLYKEMVHVDF-VPHTVTVLALVKALFTEGMDGELNEVIGDIL 480



 Score = 45.1 bits (105), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 13/154 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L+K    +GL++EA   F  M     +P+   YNV+I+  CR+GN  KA  L ++M
Sbjct: 385 SAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEM 444

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
               F   P   T   L+ +    GM             E N +   +L    + D    
Sbjct: 445 VHVDF--VPHTVTVLALVKALFTEGMD-----------GELNEVIGDILRSCKLTDAELS 491

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             L++   K   ++    L  +M K G IP+  T
Sbjct: 492 KVLVEINQKEGNMDMVFNLLTEMAKDGLIPSTGT 525


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 128/288 (44%), Gaps = 49/288 (17%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N ++   D  ++++ +G    V T ++  LI  L + G  + A+  F  MK   C PD  
Sbjct: 385 NQLEEALDLARELTVKGLSPNVYTFNI--LINALCKVGDPHLAVRLFEEMKSSGCTPDEV 442

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            YN++I+ LC  G   KA  LL++ME+ G  CP    TY  +I   CK           R
Sbjct: 443 TYNILIDNLCSSGKLAKALDLLKEMEVSG--CPQSTVTYNTIIDGLCK-----------R 489

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           RRI EA  +F  M   G   + + +N LIDG C   RI+ A EL D M  +G  PN VTY
Sbjct: 490 RRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTY 549

Query: 326 NSFIRYYSVVNEIDKAIEMMRKM------------QNLNHGV------------------ 355
           NS + +Y     I KA ++++ M              L +G+                  
Sbjct: 550 NSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRM 609

Query: 356 ----PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
               PT  +Y P+I +L       +A     E+ + G  P  +TYK+V
Sbjct: 610 KGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIV 657



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 14/234 (5%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           ++ T L++   EEG +  AL    RM +  C P     NV+IN  C++G    A   ++Q
Sbjct: 232 TTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQ 291

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
               GF   PD  T++  ++  C+ G            +  A  +  LML +G  PDV  
Sbjct: 292 EIADGFE--PDRVTFSTFVNGLCQNG-----------HVDHALKVLGLMLQEGCEPDVYT 338

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y+ +I+  C    +E A  + + M   GC+P+  T+N+ I      N++++A+++ R++ 
Sbjct: 339 YSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLAREL- 397

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +    P   ++  +I+ALC+ G    A     E+   G  P E TY ++ D L
Sbjct: 398 TVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNL 451



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 17/252 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D LK+M   G  +  +T +   +I  L +   + EA   F +M       +   +N +I+
Sbjct: 462 DLLKEMEVSGCPQ--STVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLID 519

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC     + A  L++QM   G +  P+  TY  +++ YCK G            I +A 
Sbjct: 520 GLCNAERIDDAAELVDQMISEGLQ--PNNVTYNSILTHYCKQG-----------NISKAA 566

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            + + M   GF  DVV Y  LI+G CK  R + AL+L   M  KG  P    YN  I+  
Sbjct: 567 DILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSL 626

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR-VLEARDFLAELVDGGSVP 391
              N    A+ + R+M  +  G P + +Y  +   LC  G  + EA DFL E+ D G +P
Sbjct: 627 FRGNNGRDALSLFREMTEVG-GPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIP 685

Query: 392 REYTYKLVCDAL 403
              +++++ + L
Sbjct: 686 EFSSFRMLAEGL 697



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 119/270 (44%), Gaps = 45/270 (16%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME--- 231
           L+ VL E   +    + +  M      PDV  +N VI+ALCR      A  +LE+M    
Sbjct: 167 LLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCD 226

Query: 232 -----------LPGF-------------------RCPPDVYTYTILISSYCKYGMQTGCR 261
                      + GF                    C P   T  +LI+ YCK G      
Sbjct: 227 VAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLG------ 280

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A    +  +  GF PD V ++  ++G C+   ++ AL++   M ++GC P+
Sbjct: 281 -----RVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPD 335

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TY++ I       E+++A  ++ +M + +  +P ++++  +I ALC   ++ EA D  
Sbjct: 336 VYTYSTVINCLCNNGELEEAKGIVNQMVD-SGCLPDTTTFNTLIVALCTENQLEEALDLA 394

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSL 411
            EL   G  P  YT+ ++ +AL    +P L
Sbjct: 395 RELTVKGLSPNVYTFNILINALCKVGDPHL 424


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 19/234 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++ALAT   M     +PD + YN V++ LC+     +AR L E+M     R  P+V TY
Sbjct: 25  IDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQ--RINPNVVTY 82

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI+  CK             RI  A  LF+ M  KG+VP  V+YN LIDG CK   + 
Sbjct: 83  NTLINGLCKAW-----------RIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLV 131

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A ++FD M +  C+PN VTY + I   S   ++  A E++  M  +  GV P  ++Y+ 
Sbjct: 132 AAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGM--VKKGVTPNVATYSC 189

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           +I   C+  RV EA   L ++V  G  P   TY ++ ++L  A++   L+D  +
Sbjct: 190 LIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADK---LEDAFK 240



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 14/202 (6%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   Y  ++  LC+    + A   +E+M   G +  PD + Y  ++S  C+        
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIK--PDAFIYNFVLSGLCQ-------- 56

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  LF  M+ +   P+VV YN LI+G CK +RIE A ELF +M  KG +P 
Sbjct: 57  ---EEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPT 113

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            V+YN+ I  +    ++  A ++  KM   N  VP   +YT +I  L ++G+V  A + L
Sbjct: 114 EVSYNTLIDGFCKKKDLVAAKDVFDKMVRSN-CVPNVVTYTTLIDGLSKSGKVQAAAEVL 172

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
             +V  G  P   TY  + D  
Sbjct: 173 DGMVKKGVTPNVATYSCLIDGF 194



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L +E  V EA   F +M + R  P+V  YN +IN LC+      A  L ++M   G+   
Sbjct: 54  LCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGY--V 111

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P   +Y  LI  +CK           ++ +  A  +F  M+    VP+VV Y  LIDG  
Sbjct: 112 PTEVSYNTLIDGFCK-----------KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLS 160

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PT 357
           K+ +++ A E+ D M KKG  PN  TY+  I  +  V  +D+A +++ +M  +  G+ PT
Sbjct: 161 KSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQM--VTQGIAPT 218

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +Y  ++++LC A ++ +A      +      P   TY  +  AL
Sbjct: 219 VVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRAL 264



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 18/238 (7%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           ++  ++  K+M+  G G + T  S   LI    ++  +  A   F +M +  C P+V  Y
Sbjct: 95  IETAYELFKEMA--GKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTY 152

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
             +I+ L + G    A  +L+ M   G    P+V TY+ LI  +CK            RR
Sbjct: 153 TTLIDGLSKSGKVQAAAEVLDGMVKKGV--TPNVATYSCLIDGFCKV-----------RR 199

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + EA+ L   M+ +G  P VV YN L++  C+  ++E A +LF  M ++ C P  VTYN+
Sbjct: 200 VDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNT 259

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAEL 384
            +R      ++D A  +  +M  +  G P  + +Y  +   L  AG+V EA++ + ++
Sbjct: 260 LLRALCHHKQLDGAHRLYAEM--IAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 315



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 12/187 (6%)

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
           PPD  TY  ++   CK            +RI +A      M  +G  PD   YN ++ G 
Sbjct: 6   PPDALTYGPIVERLCK-----------TKRIDDALATVEEMATRGIKPDAFIYNFVLSGL 54

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C+  ++E A  LF+ M K+   PN VTYN+ I        I+ A E+ ++M    + VPT
Sbjct: 55  CQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGY-VPT 113

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
             SY  +I   C+   ++ A+D   ++V    VP   TY  + D L+ + +     + L 
Sbjct: 114 EVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLD 173

Query: 418 KRIRDGI 424
             ++ G+
Sbjct: 174 GMVKKGV 180



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 13/177 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI  L + G V  A      M +    P+V  Y+ +I+  C+V   ++A  LLEQM  
Sbjct: 153 TTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVT 212

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P V TY IL++S C+             ++ +A  LFR M  +   P VV YN 
Sbjct: 213 QGI--APTVVTYNILLNSLCRAD-----------KLEDAFKLFRGMAQRRCHPTVVTYNT 259

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           L+   C   +++ A  L+ +M  KGC P+ +TY++     +   ++ +A E+M KM+
Sbjct: 260 LLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 316


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 114/238 (47%), Gaps = 13/238 (5%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI+ L   G   +AL     M  F C PD+  YN +I   C+    NKA  + +
Sbjct: 206 TKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFK 265

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            ++  G  C PDV TYT +IS YCK G           ++ EA+ L   ML  G  P  V
Sbjct: 266 DVK-SGSVCSPDVVTYTSMISGYCKAG-----------KMREASSLLDDMLRLGIYPTNV 313

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            +N L+DG  K   +  A E+   M   GC P+ VT+ S I  Y  V ++ +   +  +M
Sbjct: 314 TFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEM 373

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            N     P + +Y+ +I+ALC   R+L+AR+ L +L     +P+ + Y  V D    A
Sbjct: 374 -NARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKA 430



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 113/241 (46%), Gaps = 26/241 (10%)

Query: 192 FYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
           F+   +F+   R   + YN++  +LC+ G  + A  + E M+  G    P+      L+S
Sbjct: 89  FWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVS--PNNRLLGFLVS 146

Query: 250 SYCKYG---------MQT----GCRKAIRR---------RIWEANHLFRLMLFKGFVPDV 287
           S+ + G         +Q+    GC   +           R+ +A  LF   L      D 
Sbjct: 147 SFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDT 206

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             +N LI G C   + E+ALEL   M+  GC P+ VTYN+ I+ +   NE++KA EM + 
Sbjct: 207 KTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKD 266

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           +++ +   P   +YT +I   C+AG++ EA   L +++  G  P   T+ ++ D    A 
Sbjct: 267 VKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAG 326

Query: 408 E 408
           E
Sbjct: 327 E 327



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 119/266 (44%), Gaps = 16/266 (6%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           LNKA+E +  V+       + +T   M   + +   ++     L DM R G     T  +
Sbjct: 257 LNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLG--IYPTNVT 314

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              L+    + G +  A     +M  F C PDV  +  +I+  CRVG  ++   L E+M 
Sbjct: 315 FNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMN 374

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G    P+ +TY+ILI++ C              R+ +A  L   +  K  +P    YN
Sbjct: 375 ARGMF--PNAFTYSILINALCN-----------ENRLLKARELLGQLASKDIIPQPFMYN 421

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +IDG CK  ++  A  + ++M KK C P+++T+   I  + +   + +A+ +  KM  +
Sbjct: 422 PVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAI 481

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEA 377
               P   + + ++  L +AG   EA
Sbjct: 482 GCS-PDKITVSSLLSCLLKAGMAKEA 506


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 130/293 (44%), Gaps = 30/293 (10%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M  VF  G   KG   F +      +G +    S + LI  L + GL NE    FY MK+
Sbjct: 551 MDCVFKAGETEKGRALFRE---INAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKE 607

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-- 255
             C  D +AYN VI+  C+ G  NKA  LLE+M++ G   PP V TY  +I    K    
Sbjct: 608 QGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH--PPTVVTYGSVIDGLAKIDRL 665

Query: 256 ------MQTGCRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAYNCL 293
                  +      I+                 RI EA  +   ++ KG  P+V  +NCL
Sbjct: 666 DEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCL 725

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +D   K   I  AL  F  M    C PN++TY+  I     V + +KA    ++MQ L  
Sbjct: 726 LDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGL 785

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
             P + +YT +I  L +AG +LEA    +     G +P   +Y  + + L++A
Sbjct: 786 K-PNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSA 837



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 120/282 (42%), Gaps = 46/282 (16%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V   W F  +M  + +G +    + T +I VL +   ++EA+  F +++Q R  
Sbjct: 275 FGKAGKVDMSWKFFHEM--KSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKV 332

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPG-------FRC----------------- 237
           P  YAYN +I      G F++A  LLE+ +  G       + C                 
Sbjct: 333 PCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRI 392

Query: 238 --------PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
                    P+V TY ILI   C+ G      + IR  +  A          G  P+V+ 
Sbjct: 393 FEEMKRDAVPNVPTYNILIDMLCREGKLNAALE-IRDDMERA----------GLFPNVLT 441

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
            N +ID  CK  ++E A  +F+ M+ K C PN VT++S I        +D A  +  KM 
Sbjct: 442 VNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKML 501

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           +  H VP +  YT +I +  + GR  +      E+V  G  P
Sbjct: 502 DCGH-VPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSP 542



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 18/293 (6%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           N A  ++ W E+  +  H       + +V AR      L   L++MS  G G    +S++
Sbjct: 106 NTAVNYFQWAEKQTEKVHCPEAYNSLLMVMARNTEFDHLERILEEMSLSGFG---PSSNI 162

Query: 173 TC-LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           +  L+    +   + EA      M++F+ RP   AY ++I AL  V   +    L  QM+
Sbjct: 163 SIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQ 222

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G+    +V+ +T LI  + + G           R+  A  L   M       D+V YN
Sbjct: 223 ELGYEV--NVHLFTTLIRVFAREG-----------RVDAALSLLDEMKSNSLDADIVLYN 269

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
             ID   K  +++ + + F +M   G +P+ VTY S I      N +D+A+E+  +++  
Sbjct: 270 VCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQ- 328

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           N  VP + +Y  +I     AG+  EA   L      GS+P    Y  +   L 
Sbjct: 329 NRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLG 381



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 73/145 (50%), Gaps = 13/145 (8%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CL+  L +   +NEAL  F  MK  +C P+   Y+++IN LCRV  FNKA    ++M+  
Sbjct: 724 CLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKL 783

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G +  P+  TYT +IS   K G            I EA+ LF      G +PD  +YN +
Sbjct: 784 GLK--PNTITYTTMISGLAKAG-----------NILEASGLFSRFKANGGIPDSASYNAM 830

Query: 294 IDGCCKTYRIERALELFDDMNKKGC 318
           I+G     +   A  LF++   KGC
Sbjct: 831 IEGLSSANKAMDAYALFEETRLKGC 855



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 118/290 (40%), Gaps = 26/290 (8%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  V     T LI+V   EG V+ AL+    MK      D+  YNV I+   + G  + +
Sbjct: 225 GYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMS 284

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
                +M+  G    PD  TYT +I   CK             R+ EA  LF  +     
Sbjct: 285 WKFFHEMKSHGLM--PDDVTYTSMIGVLCK-----------ANRLDEAVELFEQLEQNRK 331

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           VP   AYN +I G     + + A  L +    KG IP+ + YN  +        +++A+ 
Sbjct: 332 VPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALR 391

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  +M+     VP   +Y  +I  LC  G++  A +   ++   G  P   T  ++ D L
Sbjct: 392 IFEEMKR--DAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRL 449

Query: 404 NAA---EEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLKCGEID 450
             A   EE   + +G+  ++       F  ++          L KCG +D
Sbjct: 450 CKAQKLEEACSIFEGMDDKVCTPNAVTFSSLI--------DGLGKCGRVD 491



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 13/177 (7%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           + NG  +     + LI   G+ G ++EA      + Q    P+VY +N +++AL +    
Sbjct: 676 KSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 735

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           N+A    + M+    +CPP+  TY+ILI+  C+            R+  +A   ++ M  
Sbjct: 736 NEALICFQSMK--DLKCPPNQITYSILINGLCRV-----------RKFNKAFVFWQEMQK 782

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
            G  P+ + Y  +I G  K   I  A  LF      G IP+  +YN+ I   S  N+
Sbjct: 783 LGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANK 839



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 109/263 (41%), Gaps = 16/263 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +  R   +    +   DM R G    V T  V  +I  L +   + EA + F  M    C
Sbjct: 413 MLCREGKLNAALEIRDDMERAGLFPNVLT--VNIMIDRLCKAQKLEEACSIFEGMDDKVC 470

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+   ++ +I+ L + G  + A  L E+M   G    P    YT LI S+ K G     
Sbjct: 471 TPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGH--VPGAIVYTSLIRSFFKCG----- 523

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R  + + +++ M+  G  PD+   N  +D   K    E+   LF ++N  G IP
Sbjct: 524 ------RKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIP 577

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +  +Y+  I         ++  E+   M+     V  + +Y  +I   C++G+V +A   
Sbjct: 578 DARSYSILIHGLVKAGLANETYELFYAMKE-QGCVLDTHAYNAVIDGFCKSGKVNKAYQL 636

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L E+   G  P   TY  V D L
Sbjct: 637 LEEMKVKGHPPTVVTYGSVIDGL 659


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L ++  V EA   F  M      P++  YN +I+ LC++  +     L+ +M    
Sbjct: 156 LINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEM--VD 213

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PDV+T   ++ + CK GM           + EA+ +  +M+ +G  P+VV YN L+
Sbjct: 214 SKIMPDVFTLNTVVDALCKEGM-----------VAEAHDVVDMMIHRGVEPNVVTYNALM 262

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG C    ++ A+++FD M  K C+ N ++YN+ I  Y  +  +DKA+ +  +M      
Sbjct: 263 DGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSR-QEL 321

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P + +Y  +IH LC  GR+ +A     E+V  G +P   TY+ + D L
Sbjct: 322 TPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYL 370



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 108/202 (53%), Gaps = 14/202 (6%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD++ YN +I+ALC +  +     LL +M     +  P+V  ++ ++ + CK GM     
Sbjct: 671 PDIFTYNSLIHALCNLCEWKHVTTLLNEM--VNSKIMPNVVVFSTVVDALCKEGM----- 723

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I  A+ +  +M+ +G  PDVV Y  L+DG C    ++ A+++FD M  KGC+PN
Sbjct: 724 ------IAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPN 777

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             +YN  I  Y  +  +DKA+ ++ +M +L   +  + +Y  +IH LC  GR+  A    
Sbjct: 778 VRSYNILINGYCQIQRMDKAMGLLEQM-SLQGLIADTVTYNTLIHGLCHVGRLQHAIALF 836

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+V  G +P   TY+++ D L
Sbjct: 837 HEMVASGQIPDLVTYRILLDYL 858



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 113/242 (46%), Gaps = 27/242 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EAL+TF RM   +  P    +N ++ ++ +  + +    L  QM+   F  PPDVYT 
Sbjct: 26  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMD--SFGIPPDVYTL 83

Query: 245 TILISSYC----------------KYGMQTGCRK--------AIRRRIWEANHLFRLMLF 280
            I+I+S C                K G Q              +  +I EA HLF  M+ 
Sbjct: 84  AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 143

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +GF P+VV Y  LI+G CK  ++  A  +F +M  KG  PN VTYNS I     + E   
Sbjct: 144 EGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKH 203

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
              +M +M + +  +P   +   ++ ALC+ G V EA D +  ++  G  P   TY  + 
Sbjct: 204 VTTLMNEMVD-SKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALM 262

Query: 401 DA 402
           D 
Sbjct: 263 DG 264



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 14/233 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           ++  ++  L +EG+V EA      M      P+V  YN +++  C     + A  + + M
Sbjct: 222 TLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTM 281

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                 C  +V +Y  LI+ YCK            + + +A +LF  M  +   P+ V Y
Sbjct: 282 VHKD--CVANVISYNTLINGYCKI-----------QSVDKAMYLFEEMSRQELTPNTVTY 328

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI G C   R++ A+ LF +M  +G IP+ VTY +   Y      +DKA+ +++ ++ 
Sbjct: 329 NTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEG 388

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            N   P    YT I+  +C AG + +ARD  + L   G  P  +TY ++   L
Sbjct: 389 SNWD-PDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGL 440



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 18/233 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + ++  L +EG++  A      M +    PDV  Y  +++  C     ++A  + + M  
Sbjct: 712 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVH 771

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C P+V +Y ILI+ YC+            +R+ +A  L   M  +G + D V YN 
Sbjct: 772 KG--CVPNVRSYNILINGYCQI-----------QRMDKAMGLLEQMSLQGLIADTVTYNT 818

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ--N 350
           LI G C   R++ A+ LF +M   G IP+ VTY   + Y    + + +A+ +++ ++  N
Sbjct: 819 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 878

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           L+  +     Y   I  +C AG +  ARD  + L   G  P   TY ++   L
Sbjct: 879 LDADILV---YNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGL 928



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 138/330 (41%), Gaps = 42/330 (12%)

Query: 86  EAYNIANNVLVLGPAAYRDPQKVTL-----GLNKATEFYHWVERFFDFFHNEMT-CKEMG 139
           EA+NI + ++  G +    P  VT      GL K  E+ H          NEM   K M 
Sbjct: 168 EAFNIFSEMITKGIS----PNIVTYNSLIHGLCKLCEWKHVTT-----LMNEMVDSKIMP 218

Query: 140 IVFARGNNVKGL---------WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
            VF     V  L          D +  M  RG    V T +       L  E  V+ A+ 
Sbjct: 219 DVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNE--VDVAVK 276

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            F  M    C  +V +YN +IN  C++ + +KA +L E+M        P+  TY  LI  
Sbjct: 277 VFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELT--PNTVTYNTLIHG 334

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            C  G           R+ +A  LF  M+ +G +PD+V Y  L D  CK   +++A+ L 
Sbjct: 335 LCHVG-----------RLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALL 383

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALC 369
             +      P+   Y + +       E++ A ++   + +   G+ P   +Y  +IH LC
Sbjct: 384 KAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSS--KGLQPNVWTYNIMIHGLC 441

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           + G + EA    +E+   G  P + TY L+
Sbjct: 442 KQGLLAEASKLFSEMNKNGCSPNDCTYNLI 471



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 106/220 (48%), Gaps = 18/220 (8%)

Query: 154 FLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
             ++MSR+   EL   T +   LI  L   G + +A++ F+ M      PD+  Y  + +
Sbjct: 312 LFEEMSRQ---ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSD 368

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+  + +KA  LL+ +E  G    PD+  YT ++   C+ G            + +A 
Sbjct: 369 YLCKNRHLDKAMALLKAIE--GSNWDPDIQIYTTILDGMCRAG-----------ELEDAR 415

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            LF  +  KG  P+V  YN +I G CK   +  A +LF +MNK GC PN  TYN   R +
Sbjct: 416 DLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGF 475

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
              NE  + IE++ +M      V  S++ T ++  L + G
Sbjct: 476 LRNNEALRTIELLEEMLARGFSVDVSTT-TLLVGMLSDDG 514



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 107/244 (43%), Gaps = 26/244 (10%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  I  A         D +  M +RG    V T +       L  E  ++EA+  F  
Sbjct: 719 CKEGMIAIAH--------DVVDMMIKRGVEPDVVTYTALMDGHCLRSE--MDEAVKVFDT 768

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M    C P+V +YN++IN  C++   +KA  LLEQM L G     D  TY  LI   C  
Sbjct: 769 MVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIA--DTVTYNTLIHGLCHV 826

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           R+  A  LF  M+  G +PD+V Y  L+D  CK + +  A+ L   + 
Sbjct: 827 G-----------RLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIE 875

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGR 373
                 + + YN  I       E++ A ++   + +   G+ P   +Y  +IH LC+ G 
Sbjct: 876 GSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSS--KGLQPDVRTYNIMIHGLCKRGL 933

Query: 374 VLEA 377
           + EA
Sbjct: 934 LDEA 937



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 20/209 (9%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L+ MS +G   +  T +   LI  L   G +  A+A F+ M      PD+  Y ++++ 
Sbjct: 800 LLEQMSLQG--LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDY 857

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+  +  +A  LL+ +E  G     D+  Y I I   C+ G            +  A  
Sbjct: 858 LCKNHHLAEAMVLLKAIE--GSNLDADILVYNIAIDGMCRAG-----------ELEAARD 904

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT---YNSFIR 330
           LF  +  KG  PDV  YN +I G CK   ++ A +LF  M++     N  +     S I 
Sbjct: 905 LFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDIWSNSTSSRNQKSLIY 964

Query: 331 YYSVVNEID--KAIEMMRKMQNLNHGVPT 357
              ++ EID   +I +M +   + HG P+
Sbjct: 965 QKIMLPEIDLVYSISVMFEKMFICHGCPS 993


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 131/274 (47%), Gaps = 19/274 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + LK+M +RG    +T  S   ++K     G +NEA   F  MK+  C  DV  Y  VI+
Sbjct: 226 EMLKEMVKRGLTPNLT--SYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIH 283

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
                G   +AR + + M   G    P V TY   I   CK           +  +  A 
Sbjct: 284 GFGVAGEIKRARKVFDTMVKKG--VLPSVATYNAFIQVLCK-----------KDNVDNAI 330

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F  M+ KG+VP+ + YN +I G C    +ERA+E    M   GC PN  TYN  IRY+
Sbjct: 331 VIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYF 390

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC---EAGRVLEARDFLAELVDGGS 389
               EIDKA+++ +KM +    +P   +Y  +I A+    ++  +L A + L E+VD G 
Sbjct: 391 CDEGEIDKALDLFQKMTS-GDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGF 449

Query: 390 VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           VPR++T+  V + L          + LR + R G
Sbjct: 450 VPRKFTFNRVLNGLLLTGNQGFAKEILRLQSRCG 483



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 129/291 (44%), Gaps = 19/291 (6%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           KA +F++ +     + H+  +      + AR  +   L   +  M     G   T  +  
Sbjct: 83  KALQFFNLLSHHPSYSHHPSSYDHAIDISARLRDSPSLRSLVYRMRSARLGP--TPKTFA 140

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            + +     G  + A+  F  M QF C  D+ ++N +++ LC+      A  L +  +  
Sbjct: 141 IIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFK-G 199

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
            FR   D  +Y ++++ +C           + +R  +A  + + M+ +G  P++ +YN +
Sbjct: 200 KFRA--DCVSYNVMVNGWC-----------LIKRTNKALEMLKEMVKRGLTPNLTSYNTM 246

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           + G  +  +I  A + F +M K+ C  + +TY + I  + V  EI +A ++   M  +  
Sbjct: 247 LKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTM--VKK 304

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           GV P+ ++Y   I  LC+   V  A     E+V  G VP   TY LV   L
Sbjct: 305 GVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGL 355


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 140/289 (48%), Gaps = 20/289 (6%)

Query: 135 CKEMGIVFARGNN-VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           CK   +V A  NN V   +     M ++G        S T LI  L E G V+E +  F 
Sbjct: 6   CKLGNLVEANLNNDVNSAFSVFNMMPKKGCRR--NEVSYTNLIHGLCEVGRVDEGINIFK 63

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M++  C P V  Y V+++AL   G   +A  L  +M   G  C P+++TYT++I++ CK
Sbjct: 64  KMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERG--CEPNIHTYTVMINAMCK 121

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        ++ E   +   M+ KG VP V  YN LIDG CK   +E A E+ D M
Sbjct: 122 -----------ETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLM 170

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
           +   C PN  TYN  I  +     + +A+ ++ KM   +   P+  +Y  +IH  C+ G 
Sbjct: 171 HSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLE-SRLTPSVVTYNSLIHGQCKIGY 229

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLLDDGLRKR 419
           +  A   L  + + G VP ++TY +  D L      EE ++L + L+++
Sbjct: 230 LDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEK 278



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 113/252 (44%), Gaps = 47/252 (18%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+ A+A   +M + R  P V  YN +I+  C++G  + A  LL  M   G    PD +TY
Sbjct: 195 VHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGV--VPDQWTY 252

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           ++ I + CK G           RI EAN LF  +  KG   + V Y  LIDG CK  +++
Sbjct: 253 SVFIDTLCKKG-----------RIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMD 301

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPT----- 357
            A  L D M  + C+PN  TYN+ I       ++ +A+ +M  M  + L   VPT     
Sbjct: 302 DANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILI 361

Query: 358 --------------------SSSYTP-------IIHALCEAGRVLEARDFLAELVDGGSV 390
                               SS Y P        IHA C  G + EA D ++ + + G +
Sbjct: 362 VAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVM 421

Query: 391 PREYTYKLVCDA 402
           P   TY LV DA
Sbjct: 422 PDALTYTLVIDA 433



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 120/282 (42%), Gaps = 48/282 (17%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L  +S+   LI  L +E  V EAL     M Q   +  V  Y ++I A+ + G+F+ A  
Sbjct: 316 LPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHR 375

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           +L+QM   G++  PDVY YT  I ++C            R  I EA  +  +M  +G +P
Sbjct: 376 ILDQMVSSGYQ--PDVYIYTAFIHAFCT-----------RGNIKEAEDMMSMMFERGVMP 422

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY------------- 332
           D + Y  +ID       +  A ++   M   GC P+  TY+  I++              
Sbjct: 423 DALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVA 482

Query: 333 ---SVVN-------------EIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVL 375
              S+ N             + + A+E+  KM  L HG  P  ++Y  +I  LC+ GR+ 
Sbjct: 483 LCDSIPNVFFADVADVWKMMKFETALELFEKM--LEHGCSPNINTYAKLIIGLCKVGRLG 540

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
            A+     + + G  P E  Y      LN   E  +  D +R
Sbjct: 541 VAQKLFDHMNERGVSPSEAIYN---SLLNCCCELGIYGDAVR 579



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 115/289 (39%), Gaps = 56/289 (19%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LI  + +EG  + A     +M     +PDVY Y   I+A C  GN  +A  ++
Sbjct: 353 TVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMM 412

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM------------QTGC--------------- 260
             M   G    PD  TYT++I +Y   G+             TGC               
Sbjct: 413 SMMFERGVM--PDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLL 470

Query: 261 RKAIRRR--------------------IWE------ANHLFRLMLFKGFVPDVVAYNCLI 294
           ++ + ++                    +W+      A  LF  ML  G  P++  Y  LI
Sbjct: 471 KEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLI 530

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G CK  R+  A +LFD MN++G  P+   YNS +     +     A+ ++  M    H 
Sbjct: 531 IGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGH- 589

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +P   S   +   L E G   +A+   + L+  G    E  +K++ D L
Sbjct: 590 LPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGL 638



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 28/168 (16%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           AL  F +M +  C P++  Y  +I  LC+VG    A+ L + M   G    P    Y  L
Sbjct: 507 ALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGV--SPSEAIYNSL 564

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHL-------------------------FRLMLFKG 282
           ++  C+ G+     + +   + E  HL                         F  +L  G
Sbjct: 565 LNCCCELGIYGDAVRLVGA-MMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCG 623

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           +  D VA+  LIDG  K    +   EL   M  +GC  +  TY   I 
Sbjct: 624 YNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHPQTYRMLIE 671


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L ++  V EA   F  M      PD++ YN +I+ALC +  +     LL +M    
Sbjct: 258 IIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM--VN 315

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P+V  ++ ++ + CK GM           I  A+ +  +M+ +G  PDVV Y  L+
Sbjct: 316 SKIMPNVVVFSTVVDALCKEGM-----------IAIAHDVVDMMIKRGVEPDVVTYTALM 364

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG C    ++ A+++FD M  KGC+PN  +YN  I  Y  +  +DKA+ ++ +M +L   
Sbjct: 365 DGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQM-SLQGL 423

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  + +Y  +IH LC  GR+  A     E+V  G +P   TY+++ D L
Sbjct: 424 IADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 472



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 116/259 (44%), Gaps = 16/259 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           +T   T L+  + +    +  L+   +M  F   PDVY  N++IN+ C +     A  +L
Sbjct: 111 STVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVL 170

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            ++   G  C PD  T+  LI   C  G           +I EA HLF   + +GF PDV
Sbjct: 171 AKLLKLG--CQPDNTTFNTLIRGLCVEG-----------KIGEALHLFDKTIGEGFQPDV 217

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y  L++G CK      A+ L   M +K C PN + YN+ I       ++ +A  +  +
Sbjct: 218 VTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSE 277

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           M  +  G+ P   +Y  +IHALC           L E+V+   +P    +  V DAL   
Sbjct: 278 M--ITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKE 335

Query: 407 EEPSLLDDGLRKRIRDGIE 425
              ++  D +   I+ G+E
Sbjct: 336 GMIAIAHDVVDMMIKRGVE 354



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 18/212 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++  L +EG++  A      M +    PDV  Y  +++  C     ++A  + + M   G
Sbjct: 328 VVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 387

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+V +Y ILI+ YC+            +R+ +A  L   M  +G + D V YN LI
Sbjct: 388 --CVPNVRSYNILINGYCQI-----------QRMDKAMGLLEQMSLQGLIADTVTYNTLI 434

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ--NLN 352
            G C   R++ A+ LF +M   G IP+ VTY   + Y    + + +A+ +++ ++  NL+
Sbjct: 435 HGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLD 494

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
             +     Y   I  +C AG +  ARD  + L
Sbjct: 495 ADILV---YNIAIDGMCRAGELEAARDLFSNL 523



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 85/218 (38%), Gaps = 58/218 (26%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  I  A         D +  M +RG    V T +       L  E  ++EA+  F  
Sbjct: 333 CKEGMIAIAH--------DVVDMMIKRGVEPDVVTYTALMDGHCLRSE--MDEAVKVFDT 382

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M    C P+V +YN++IN  C++   +KA  LLEQM L G     D  TY  LI   C  
Sbjct: 383 MVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL--IADTVTYNTLIHGLCHV 440

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY------------------------ 290
           G           R+  A  LF  M+  G +PD+V Y                        
Sbjct: 441 G-----------RLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIE 489

Query: 291 -----------NCLIDGCCKTYRIERALELFDDMNKKG 317
                      N  IDG C+   +E A +LF +++ +G
Sbjct: 490 GSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQG 527


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 129/278 (46%), Gaps = 20/278 (7%)

Query: 150 GLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           G WD    M R   G  +    VT   LI V  +EG + EA   +  M      PD   Y
Sbjct: 323 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 382

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           N +I+  C+    ++A  + + M   G  C PD+ TY+ILI+SYCK            +R
Sbjct: 383 NSLIDGFCKENCLHEANQMFDLMVSKG--CEPDIVTYSILINSYCK-----------AKR 429

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + +   LFR +  KG +P+ + YN L+ G C++ ++  A ELF +M  +G  P+ VTY  
Sbjct: 430 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 489

Query: 328 FIRYYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            +       E++KA+E+  KMQ   +  G+     Y  IIH +C A +V +A      L 
Sbjct: 490 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGI---YNIIIHGMCNASKVDDAWSLFCSLS 546

Query: 386 DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           D G  P   TY ++   L      S  D   RK   DG
Sbjct: 547 DKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 584



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 14/234 (5%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + L+     EG V+EA+A   RM + + RPD+   + +IN LC  G  ++A  L++
Sbjct: 169 TITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLID 228

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M   GF+  PD  TY  +++  CK G       A+      A  LFR M  +     VV
Sbjct: 229 RMVEYGFQ--PDEVTYGPVLNRLCKSG-----NSAL------ALDLFRKMEERNIKASVV 275

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y+ +ID  CK    + AL LF++M  KG   + VTY+S I       + D   +M+R+M
Sbjct: 276 QYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM 335

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              N  +P   +++ +I    + G++LEA++   E++  G  P   TY  + D 
Sbjct: 336 IGRNI-IPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDG 388



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 15/184 (8%)

Query: 178 VLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           VLG  + G +N A   F  M      P V  Y ++++ LC  G  NKA  + E+M+    
Sbjct: 456 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKS-- 513

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           R    +  Y I+I   C              ++ +A  LF  +  KG  PDVV YN +I 
Sbjct: 514 RMTLGIGIYNIIIHGMCN-----------ASKVDDAWSLFCSLSDKGVKPDVVTYNVMIG 562

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G CK   +  A  LF  M + GC P+  TYN  IR +   + +  ++E++ +M+      
Sbjct: 563 GLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSA 622

Query: 356 PTSS 359
            +S+
Sbjct: 623 DSST 626



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 27/243 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           VN+A+  F  M Q R  P    +N + +A+ R   ++      + MEL G     D+YT 
Sbjct: 80  VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIE--HDMYTM 137

Query: 245 TILISSYCK-----YGMQTGCRK-------------------AIRRRIWEANHLFRLMLF 280
           TI+I+ YC+     +      R                     +  R+ EA  L   M+ 
Sbjct: 138 TIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 197

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
               PD+V  + LI+G C   R+  AL L D M + G  P+ VTY   +           
Sbjct: 198 MKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSAL 257

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A+++ RKM+  N        Y+ +I +LC+ G   +A     E+   G      TY  + 
Sbjct: 258 ALDLFRKMEERNIKASV-VQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLI 316

Query: 401 DAL 403
             L
Sbjct: 317 GGL 319


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 134/290 (46%), Gaps = 20/290 (6%)

Query: 129 FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188
           F NE+    +   F +   V   ++ L +M  RG    V   S   LI+ L  +G ++EA
Sbjct: 108 FPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHST--LIQGLCRKGRIDEA 165

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL---PGFRCPPDVYTYT 245
           L  F  M +  C P+V  YN V+N LC+    ++A  L + ME        C PDV +Y+
Sbjct: 166 LEQFKSMGE-ECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYS 224

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            +I + CK            +R+ +A   F+ M   G  P+VV Y+ LIDG CK  R   
Sbjct: 225 TVIDALCK-----------AQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSE 273

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPI 364
            LEL   M +KG   N + +N+ +      +E +KA +   ++  L  G  P   +Y   
Sbjct: 274 CLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERL--LKSGKKPNVVTYNVA 331

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
           +H LC+AGRV EA   L E+V+    P   TY  + D    A      DD
Sbjct: 332 VHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADD 381



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 120/276 (43%), Gaps = 31/276 (11%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L  M  +G G  +       ++  L +     +A   F R+ +   +P+V  YNV ++
Sbjct: 276 ELLLHMKEKGFG--INIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVH 333

Query: 213 ALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-- 269
            LC+ G  ++A R LLE +E    +  PDV TY+ +I  +CK G          R +   
Sbjct: 334 GLCKAGRVDEAYRILLEMVE---SKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHE 390

Query: 270 ----------------------EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
                                 EA  +   M+  GF+P +  YN L+D  C    +E AL
Sbjct: 391 CIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESAL 450

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           E++  M +K   P+  TY   I+       +D+A E +  M+  N  VP  +    ++  
Sbjct: 451 EIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNV-VPNGAICHALVEV 509

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           LC+ G V EA   L  +V+ G  P   T+K++ + L
Sbjct: 510 LCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEEL 545



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 138/348 (39%), Gaps = 87/348 (25%)

Query: 142 FARGNNVKGLWDFLKDMSRR---GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
             + N +    +   DM +R    +G      S + +I  L +   V++A   F RM+  
Sbjct: 190 LCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAV 249

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF----------------------R 236
            C P+V  Y+ +I+ LC+V   ++   LL  M+  GF                       
Sbjct: 250 GCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKA 309

Query: 237 C-----------PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           C            P+V TY + +   CK G           R+ EA  +   M+     P
Sbjct: 310 CQFFERLLKSGKKPNVVTYNVAVHGLCKAG-----------RVDEAYRILLEMVESKVTP 358

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS------------ 333
           DV+ Y+ +IDG CK  R+++A ++F  M    CIP+ VT+ + +  +S            
Sbjct: 359 DVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVH 418

Query: 334 --VVN---------------------EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
             +VN                      ++ A+E+  KM+      P  ++Y P+I  LC 
Sbjct: 419 EDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQ-PDCNTYAPLIQCLCR 477

Query: 371 AGRVLEARDFLAELVDGGSVPR----EYTYKLVCDALNAAEEPSLLDD 414
           A RV EA++FL  +     VP         +++C      E  S+LD+
Sbjct: 478 ARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDN 525



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 110/259 (42%), Gaps = 31/259 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V  AL  +++MK+ + +PD   Y  +I  LCR    ++A+  L+ ME       P+    
Sbjct: 446 VESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNV--VPNGAIC 503

Query: 245 TILISSYCKYG------------MQTGCR-----------KAIRRRIWEANHLFRLMLFK 281
             L+   CK G            ++ GC+           +   R+ WEA    +L+   
Sbjct: 504 HALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAAS--KLLRSP 561

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           GFV D   Y+  +   CK  + + A+E+ + M  KG  P+  TY + +R    ++ ++ A
Sbjct: 562 GFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESA 621

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           I    KM +     P   +YT +I   C A    EA      +V  G  P+  T + +  
Sbjct: 622 IAEFEKMAS-RGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTLSS 680

Query: 402 ALNAAEEPSLLDDGLRKRI 420
            L  A    LL   +R+RI
Sbjct: 681 CLRDAGYQDLL---VRQRI 696



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 16/174 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L++VL ++G V+EA +    + +  C+P    + +++  L     +  A  LL     PG
Sbjct: 506 LVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRS---PG 562

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F    D  TY++ ++  CK G              EA  +   M+ KG  PD   Y  ++
Sbjct: 563 F--VADAATYSLCVAEICKAGKPD-----------EAVEVIEQMVLKGVRPDEGTYVAVL 609

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
              C   R+E A+  F+ M  +GC P  VTY   I      +  D+A  +   M
Sbjct: 610 RSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAM 663



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 17/202 (8%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P +  YNV+++ +C   +   A  +  +M+    +  PD  TY  LI   C+        
Sbjct: 428 PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQ--PDCNTYAPLIQCLCR-------- 477

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               RR+ EA     +M     VP+    + L++  CK   ++ A  + D++ + GC P 
Sbjct: 478 ---ARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPL 534

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             T+   +    +  + + A +++R        V  +++Y+  +  +C+AG+  EA + +
Sbjct: 535 GETFKILVEELYLRKKWEAASKLLRS----PGFVADAATYSLCVAEICKAGKPDEAVEVI 590

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            ++V  G  P E TY  V  +L
Sbjct: 591 EQMVLKGVRPDEGTYVAVLRSL 612



 Score = 45.4 bits (106), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 13/125 (10%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G +   ++ +  +  + + G  +EA+    +M     RPD   Y  V+ +LC +   
Sbjct: 559 RSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRV 618

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
             A    E+M   G  C P + TYT+LI   C   M             EA  +F  M+ 
Sbjct: 619 ESAIAEFEKMASRG--CAPGLVTYTLLIGEACSADMAD-----------EAFRIFEAMVA 665

Query: 281 KGFVP 285
            GF P
Sbjct: 666 AGFTP 670


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 114/238 (47%), Gaps = 13/238 (5%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI+ L   G   +AL     M  F C PD+  YN +I   C+    NKA  + +
Sbjct: 206 TKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFK 265

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            ++  G  C PDV TYT +IS YCK G           ++ EA+ L   ML  G  P  V
Sbjct: 266 DVK-SGSVCSPDVVTYTSMISGYCKAG-----------KMREASSLLDDMLRLGIYPTNV 313

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            +N L+DG  K   +  A E+   M   GC P+ VT+ S I  Y  V ++ +   +  +M
Sbjct: 314 TFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEM 373

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            N     P + +Y+ +I+ALC   R+L+AR+ L +L     +P+ + Y  V D    A
Sbjct: 374 -NARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKA 430



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 113/241 (46%), Gaps = 26/241 (10%)

Query: 192 FYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
           F+   +F+   R   + YN++  +LC+ G  + A  + E M+  G    P+      L+S
Sbjct: 89  FWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGV--SPNNRLLGFLVS 146

Query: 250 SYCKYG---------MQT----GCRKAIRR---------RIWEANHLFRLMLFKGFVPDV 287
           S+ + G         +Q+    GC   +           R+ +A  LF   L      D 
Sbjct: 147 SFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDT 206

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             +N LI G C   + E+ALEL   M+  GC P+ VTYN+ I+ +   NE++KA EM + 
Sbjct: 207 KTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKD 266

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           +++ +   P   +YT +I   C+AG++ EA   L +++  G  P   T+ ++ D    A 
Sbjct: 267 VKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAG 326

Query: 408 E 408
           E
Sbjct: 327 E 327



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 119/266 (44%), Gaps = 16/266 (6%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           LNKA+E +  V+       + +T   M   + +   ++     L DM R G     T  +
Sbjct: 257 LNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLG--IYPTNVT 314

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              L+    + G +  A     +M  F C PDV  +  +I+  CRVG  ++   L E+M 
Sbjct: 315 FNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMN 374

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G    P+ +TY+ILI++ C              R+ +A  L   +  K  +P    YN
Sbjct: 375 ARGMF--PNAFTYSILINALCN-----------ENRLLKARELLGQLASKDIIPQPFMYN 421

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +IDG CK  ++  A  + ++M KK C P+++T+   I  + +   + +A+ +  KM  +
Sbjct: 422 PVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAI 481

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEA 377
               P   + + ++  L +AG   EA
Sbjct: 482 GCS-PDKITVSSLLSCLLKAGMAKEA 506


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 18/231 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L ++  + EAL  F  M      PD++ YN +I+ALC +  +     LL +M    
Sbjct: 167 LMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEM--VK 224

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P+V +  I++ + CK G           ++ EA+ +  +M+  G  PDVV Y  L+
Sbjct: 225 SKIMPNVVSLNIVVDALCKEG-----------KVTEAHDVVDMMIQGGVEPDVVTYAALM 273

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLN 352
           DG C    ++ A+++FD M + GC+ N V+YN+ I  Y  +  IDKA+ +  +M  Q L 
Sbjct: 274 DGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQEL- 332

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +P + +Y+ +IH LC  GR+ +A     E+V  G +P   TY ++ D L
Sbjct: 333 --IPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYL 381



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 121/242 (50%), Gaps = 27/242 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL++F+RM      P ++ +  ++ ++ ++ +++    L ++M+   F  PPDVYT 
Sbjct: 37  LDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMD--SFGIPPDVYTL 94

Query: 245 TILISSYC----------------KYGMQ--TGCRKAIRR------RIWEANHLFRLMLF 280
           TI+I+S+C                K G Q  T     + R      +I EA  +F  M+ 
Sbjct: 95  TIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVG 154

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +GF P+VV Y  L++G CK  ++  AL LF +M  KG  P+  TYNS I     + E   
Sbjct: 155 EGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKH 214

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
              ++ +M   +  +P   S   ++ ALC+ G+V EA D +  ++ GG  P   TY  + 
Sbjct: 215 VTTLLNEMVK-SKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALM 273

Query: 401 DA 402
           D 
Sbjct: 274 DG 275



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 14/233 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S+  ++  L +EG V EA      M Q    PDV  Y  +++  C     ++A  + + M
Sbjct: 233 SLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMM 292

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G  C  +V +Y  LI+ YCK            +RI +A +LF  M  +  +P+ + Y
Sbjct: 293 VRNGCVC--NVVSYNTLINGYCKI-----------QRIDKAMYLFEEMCRQELIPNTMTY 339

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + LI G C   R++ A+ LF++M   G IPN VTY+  + Y    + + +A+ +++ ++ 
Sbjct: 340 STLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEG 399

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            N   P    Y   I  +C AG +  ARD  + L   G  P  +T+ ++   L
Sbjct: 400 SNLD-PDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGL 451



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 21/239 (8%)

Query: 149 KGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           K ++ F ++M R+   EL+  T + + LI  L   G + +A+A F  M      P++  Y
Sbjct: 319 KAMYLF-EEMCRQ---ELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTY 374

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           +++++ LC+     +A  LL+ +E  G    PDV  Y I I   C+ G            
Sbjct: 375 SILLDYLCKNHRLAEAMALLKAIE--GSNLDPDVQVYNIAIDGMCRAG-----------D 421

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           +  A  LF  +  +G  PDV  +N +I G CK   ++ A +LF +M++ GC+ N  TYN+
Sbjct: 422 LEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNT 481

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP-IIHALCEAGRVLEARDFLAELV 385
             +     N+  +AI+++ +M  L  G     S T  ++  L + G     +  L E +
Sbjct: 482 ITQGLLQNNKTSRAIQLLEEM--LARGFSADVSTTALLVKMLSDDGLDQSVKQILCEFM 538


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 127/265 (47%), Gaps = 31/265 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK   + G+++ A   F  M++    PDV  Y+ VI ALCR+G  + A     QM   G
Sbjct: 397 LIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQG 456

Query: 235 FRCPPDVYTYTILISSYCKYG------------MQTGCRKAIR------------RRIWE 270
               P + TY  LI  +C +G            M  G R  I              R+ +
Sbjct: 457 V--APSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMD 514

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A ++F   +  G  P+V+ YN L+DG C   ++E AL +FD M   G  PN V Y + + 
Sbjct: 515 AQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVN 574

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
            Y  V  ID+ + + R++  L+ G+ P+++ Y  I+H L +AGR + A+    E+ + G 
Sbjct: 575 GYCKVGRIDEGLSLFREI--LHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGI 632

Query: 390 VPREYTYKLVCDAL--NAAEEPSLL 412
               YTY +V   L  N+  + ++L
Sbjct: 633 AMDRYTYSIVLGGLFKNSCSDEAIL 657



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 124/261 (47%), Gaps = 17/261 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF-YRMKQFRCRP 202
           R +  K    F   + + G G  + T  ++ L++ L E     EAL    +RM    C P
Sbjct: 120 RAHRPKLTLAFFGQVLKTGLG--IDTIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVP 177

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           DV++Y +V+ +LC      +A  LL  M   G  C P+   Y  +I  + K G       
Sbjct: 178 DVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEG------- 230

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                + +A  LF  M+ +G  PD+  YNC+++  CK   +++A  +   M  KG +P+ 
Sbjct: 231 ----DVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDN 286

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
            TYNS I  YS   +  +A+ + +KM   + G+ P   +   ++ +LC+ G++ +ARD  
Sbjct: 287 WTYNSLIYGYSSTGQWKEAVRVSKKMT--SQGILPDVVTLNSLMASLCKHGKIKDARDVF 344

Query: 382 AELVDGGSVPREYTYKLVCDA 402
             +   G     ++YK++ + 
Sbjct: 345 DSMAMKGQKTDIFSYKIMLNG 365



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 128/297 (43%), Gaps = 60/297 (20%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L+ M+  G   L    +   +I    +EG VN+A   F  M Q    PD+  YN V+N
Sbjct: 200 ELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVN 259

Query: 213 ALCRVGNFNKARFLLEQME----LP----------GFRCP-------------------P 239
           ALC+    +KA  +L QM     LP          G+                      P
Sbjct: 260 ALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILP 319

Query: 240 DVYTYTILISSYCKYGMQTGCRK------------------------AIRRRIWEANHLF 275
           DV T   L++S CK+G     R                         A +  + +   LF
Sbjct: 320 DVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELF 379

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
            LML  G  PD   +N LI    K   ++RA  +F++M ++G  P+ VTY++ I     +
Sbjct: 380 NLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRI 439

Query: 336 NEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
            ++D A+E   +M  ++ GV P+ S+Y  +I   C  G +L+A+D + ++++ G  P
Sbjct: 440 GKMDDAVEKFNQM--IDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRP 494



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 119/275 (43%), Gaps = 16/275 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L + G V +A   F         P+V  YN +++  C VG    A  + + M   G
Sbjct: 502 IINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAG 561

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P+V  Y  L++ YCK G           RI E   LFR +L KG  P    YN ++
Sbjct: 562 IQ--PNVVVYGTLVNGYCKVG-----------RIDEGLSLFREILHKGIKPSTTLYNIIL 608

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G  +  R   A   F +M + G   +R TY+  +      +  D+AI + +++  +N  
Sbjct: 609 HGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVK 668

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
           +  ++    +I  + +  RV EA+D  A +   G VP   TY ++   L         DD
Sbjct: 669 IDITT-LNIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADD 727

Query: 415 GLRKRIRDGIEYRFRQVMK--VKPIMKHKELLKCG 447
                   G E    Q++   V+ +++ +E+++ G
Sbjct: 728 MFSSMENAGCEQPNSQLLNHVVRELLEKREIVRAG 762



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 89/202 (44%), Gaps = 13/202 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E L+ F  +     +P    YN++++ L + G    A+    +M   G     D Y
Sbjct: 580 GRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGI--AMDRY 637

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY+I++    K      C         EA  LF+ +       D+   N +I G  +  R
Sbjct: 638 TYSIVLGGLFK----NSCSD-------EAILLFKELHAMNVKIDITTLNIMIAGMFQIRR 686

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +E A +LF  +++ G +P+ VTY+  +        +++A +M   M+N     P S    
Sbjct: 687 VEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAGCEQPNSQLLN 746

Query: 363 PIIHALCEAGRVLEARDFLAEL 384
            ++  L E   ++ A  +L+++
Sbjct: 747 HVVRELLEKREIVRAGTYLSKI 768



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 13/188 (6%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P ++TY IL+           C +A R ++  A   F  +L  G   D +  + L+ G C
Sbjct: 106 PTLHTYGILMDC---------CTRAHRPKLTLA--FFGQVLKTGLGIDTIMISNLLRGLC 154

Query: 299 KTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH-GVP 356
           +  R   AL+ L   M   GC+P+  +Y   ++      +  +A E++R M       +P
Sbjct: 155 EAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLP 214

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            + +Y  +I    + G V +A D   E+V  G  P   TY  V +AL  A      +  L
Sbjct: 215 NAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAIL 274

Query: 417 RKRIRDGI 424
           R+ +  G+
Sbjct: 275 RQMVDKGV 282


>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
          Length = 616

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 128/275 (46%), Gaps = 31/275 (11%)

Query: 146 NNVKGLWDFLKDMSRR--------GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           N +   W  +KD SR          +G   T ++   ++K     G +  A   F +MK+
Sbjct: 203 NTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKK 262

Query: 198 F-----RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
                  C+PDV +Y  +++ L   G   KAR + ++M   G  C P V TY  LI   C
Sbjct: 263 RGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEG--CAPSVATYNALIQVIC 320

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           K G            + +A  +F  ML KG+VP+VV Y  LI G C   +I+R L+L + 
Sbjct: 321 KKG-----------NVEDAVTVFDGMLVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLER 369

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           M   GC P   TYN  IRY     E++K +++  KM      +P   +Y  II A+    
Sbjct: 370 MKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRK 429

Query: 373 R----VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           R    VL AR  + E+VD G +PR + +  V + L
Sbjct: 430 RAEDMVLAAR-MVDEMVDRGYLPRRFMFNRVLNGL 463



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 9/161 (5%)

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           R   +A  L R  L + F PDVV YN L DG C+     RAL++   M + G  P + TY
Sbjct: 179 RHAGKAASLVR-ALEQRFTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTY 237

Query: 326 N----SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           N     F R   + +  D  ++M ++        P   SYT ++H L  AG++ +AR   
Sbjct: 238 NIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVF 297

Query: 382 AELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRK 418
            E+   G  P   TY    +++C   N  +  ++ D  L K
Sbjct: 298 DEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVK 338


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 129/278 (46%), Gaps = 20/278 (7%)

Query: 150 GLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           G WD    M R   G  +    VT   LI V  +EG + EA   +  M      PD   Y
Sbjct: 294 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 353

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           N +I+  C+    ++A  + + M   G  C PD+ TY+ILI+SYCK            +R
Sbjct: 354 NSLIDGFCKENCLHEANQMFDLMVSKG--CEPDIVTYSILINSYCK-----------AKR 400

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + +   LFR +  KG +P+ + YN L+ G C++ ++  A ELF +M  +G  P+ VTY  
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460

Query: 328 FIRYYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            +       E++KA+E+  KMQ   +  G+     Y  IIH +C A +V +A      L 
Sbjct: 461 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGI---YNIIIHGMCNASKVDDAWSLFCSLS 517

Query: 386 DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           D G  P   TY ++   L      S  D   RK   DG
Sbjct: 518 DKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 14/234 (5%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + L+     EG V+EA+A   RM + + RPD+   + +IN LC  G  ++A  L++
Sbjct: 140 TITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLID 199

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M   GF+  PD  TY  +++  CK G               A  LFR M  +     VV
Sbjct: 200 RMVEYGFQ--PDEVTYGPVLNRLCKSGNSA-----------LALDLFRKMEERNIKASVV 246

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y+ +ID  CK    + AL LF++M  KG   + VTY+S I       + D   +M+R+M
Sbjct: 247 QYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM 306

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              N  +P   +++ +I    + G++LEA++   E++  G  P   TY  + D 
Sbjct: 307 IGRNI-IPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDG 359



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 15/184 (8%)

Query: 178 VLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           VLG  + G +N A   F  M      P V  Y ++++ LC  G  NKA  + E+M+    
Sbjct: 427 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKS-- 484

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           R    +  Y I+I   C              ++ +A  LF  +  KG  PDVV YN +I 
Sbjct: 485 RMTLGIGIYNIIIHGMCN-----------ASKVDDAWSLFCSLSDKGVKPDVVTYNVMIG 533

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G CK   +  A  LF  M + GC P+  TYN  IR +   + +  ++E++ +M+      
Sbjct: 534 GLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSA 593

Query: 356 PTSS 359
            +S+
Sbjct: 594 DSST 597



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 27/243 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           VN+A+  F  M Q R  P    +N + +A+ R   ++      + MEL G     D+YT 
Sbjct: 51  VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIE--HDMYTM 108

Query: 245 TILISSYCK-----YGMQTGCRK-------------------AIRRRIWEANHLFRLMLF 280
           TI+I+ YC+     +      R                     +  R+ EA  L   M+ 
Sbjct: 109 TIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 168

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
               PD+V  + LI+G C   R+  AL L D M + G  P+ VTY   +           
Sbjct: 169 MKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSAL 228

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A+++ RKM+  N        Y+ +I +LC+ G   +A     E+   G      TY  + 
Sbjct: 229 ALDLFRKMEERNIKASV-VQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLI 287

Query: 401 DAL 403
             L
Sbjct: 288 GGL 290


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 135/287 (47%), Gaps = 19/287 (6%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           ++  F++W      F  +     EM  +  +       W  +  M  RG    +T  + +
Sbjct: 160 QSLAFFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVE--ITVHTFS 217

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            L++     GL  EA+  F RM+ + C PD+ A+++VI++LC+    N+A+   + ++  
Sbjct: 218 ALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLK-- 275

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
             R  PDV  YT L+  +C+ G            I +A  +F  M   G  P+V  Y+ +
Sbjct: 276 -HRFEPDVVVYTSLVHGWCRAG-----------DISKAEEVFSDMKMAGIKPNVYTYSIV 323

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ID  C+  +I RA ++F +M   GC PN VT+NS +R +      +K +++  +M+ L  
Sbjct: 324 IDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRL-- 381

Query: 354 GVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           G P  + SY  II + C    + EA   L  +V  G  P   T+  +
Sbjct: 382 GCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFI 428


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 137/282 (48%), Gaps = 41/282 (14%)

Query: 152 WDFLKDMSRRGN-GELVTTSSVT---CLI-KVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           +D   +M  RG   + +T +++    CL+ +++G   L++E +            P VY 
Sbjct: 170 YDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILK-------NINPGVYI 222

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----------- 255
           YN++INALC+ GN  +A+ LL  M   G +  P V TY+ L+  YC  G           
Sbjct: 223 YNILINALCKEGNVKEAKNLLAVMTKEGIK--PGVVTYSTLMDGYCLVGEVQNAKQIFHA 280

Query: 256 -MQTGCRKAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
            +Q G    +             +R+ EA +L R ML K  VPD V YN LIDG CK+ R
Sbjct: 281 MVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGR 340

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           I  AL L ++M+ +G   + VTY S +        +DKA  +  KM+    G+ PT  +Y
Sbjct: 341 ITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMK--ERGIQPTMYTY 398

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           T +I  LC+ GR+  A++    L+  G     +TY ++   L
Sbjct: 399 TALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGL 440



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 18/204 (8%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PD    N ++  LC  G   K+    +++   GF+   D  +Y  L++  CK G +T C
Sbjct: 77  QPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQ--MDHVSYGTLLNGLCKIG-ETRC 133

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                     A  L R++  +   P+VV YN +IDG CK   +  A +L+ +M+ +G  P
Sbjct: 134 ----------AVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFP 183

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           + +TY + I  + ++ ++  A  ++ +M  +N+N GV     Y  +I+ALC+ G V EA+
Sbjct: 184 DAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYI---YNILINALCKEGNVKEAK 240

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           + LA +   G  P   TY  + D 
Sbjct: 241 NLLAVMTKEGIKPGVVTYSTLMDG 264



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 85/180 (47%), Gaps = 13/180 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI  L + G +  AL     M       DV  Y  +++ALC+  N +KA  L  
Sbjct: 325 TVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFM 384

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M+  G +  P +YTYT LI   CK G           R+  A  LF+ +L KG   DV 
Sbjct: 385 KMKERGIQ--PTMYTYTALIDGLCKGG-----------RLKNAQELFQHLLVKGCCIDVW 431

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  +I G CK    + AL +   M   GCIPN VT+   IR     +E DKA +++ +M
Sbjct: 432 TYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEM 491



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 18/234 (7%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M   R  P +  +N ++ +L ++  +  A  L +QME+ G R   +  T  ILI+ +C  
Sbjct: 1   MLLVRHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIR--ANFVTLNILINCFCHL 58

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G Q     ++  +I +           G+ PD +  N L+ G C    ++++L   D + 
Sbjct: 59  G-QMAFSFSVLGKILKL----------GYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVV 107

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
            +G   + V+Y + +     + E   A++++R +++     P    Y  II  LC+   V
Sbjct: 108 AQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIED-RSTRPNVVMYNTIIDGLCKDKLV 166

Query: 375 LEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIRDGI 424
            EA D  +E+   G  P   TY  +    C         SLLD+ + K I  G+
Sbjct: 167 NEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGV 220


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 130/293 (44%), Gaps = 30/293 (10%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M  VF  G   KG   F +      +G +    S + LI  L + GL NE    FY MK+
Sbjct: 306 MDCVFKAGETEKGRALFRE---INAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKE 362

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-- 255
             C  D +AYN VI+  C+ G  NKA  LLE+M++ G   PP V TY  +I    K    
Sbjct: 363 QGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH--PPTVVTYGSVIDGLAKIDRL 420

Query: 256 ------MQTGCRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAYNCL 293
                  +      I+                 RI EA  +   ++ KG  P+V  +NCL
Sbjct: 421 DEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCL 480

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +D   K   I  AL  F  M    C PN++TY+  I     V + +KA    ++MQ L  
Sbjct: 481 LDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGL 540

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
             P + +YT +I  L +AG +LEA    +     G +P   +Y  + + L++A
Sbjct: 541 K-PNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSA 592



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 122/280 (43%), Gaps = 52/280 (18%)

Query: 160 RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
           ++  G + +  +  C++  LG++  V EAL  F  MK+    P+V  YN++I+ LCR G 
Sbjct: 116 QKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKR-DAVPNVPTYNILIDMLCREGK 174

Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279
            N A  + + ME  G    P+V T  I+I   CK            +++ EA  +F  M 
Sbjct: 175 LNAALEIRDDMERAGLF--PNVLTVNIMIDRLCK-----------AQKLEEACSIFEGMD 221

Query: 280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY------- 332
            K   P+ V ++ LIDG  K  R++ A  L++ M   G +P  + Y S IR +       
Sbjct: 222 DKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKE 281

Query: 333 ------------------SVVN----------EIDKAIEMMRKMQNLNHG-VPTSSSYTP 363
                             +++N          E +K   + R++    HG +P + SY+ 
Sbjct: 282 DGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREIN--AHGFIPDARSYSI 339

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +IH L +AG   E  +    + + G V   + Y  V D  
Sbjct: 340 LIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGF 379



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 107/219 (48%), Gaps = 15/219 (6%)

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
           VL +   ++EA+  F +++Q R  P  YAYN +I      G F++A  LLE+ +  G   
Sbjct: 64  VLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKG--S 121

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            P V  Y  +++   K           +RR+ EA  +F  M  +  VP+V  YN LID  
Sbjct: 122 IPSVIAYNCILTCLGK-----------KRRVEEALRIFEEMK-RDAVPNVPTYNILIDML 169

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C+  ++  ALE+ DDM + G  PN +T N  I       ++++A  +   M +     P 
Sbjct: 170 CREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDD-KVCTPN 228

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           + +++ +I  L + GRV +A     +++D G VP    Y
Sbjct: 229 AVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVY 267



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 96/217 (44%), Gaps = 15/217 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I   G  G  +EA     R K     P V AYN ++  L +     +A  + E+M+   
Sbjct: 96  MIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDA 155

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V TY ILI   C+ G      + IR  +  A          G  P+V+  N +I
Sbjct: 156 V---PNVPTYNILIDMLCREGKLNAALE-IRDDMERA----------GLFPNVLTVNIMI 201

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK  ++E A  +F+ M+ K C PN VT++S I        +D A  +  KM +  H 
Sbjct: 202 DRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGH- 260

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           VP +  YT +I +  + GR  +      E+V  G  P
Sbjct: 261 VPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSP 297



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 73/145 (50%), Gaps = 13/145 (8%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CL+  L +   +NEAL  F  MK  +C P+   Y+++IN LCRV  FNKA    ++M+  
Sbjct: 479 CLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKL 538

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G +  P+  TYT +IS   K G            I EA+ LF      G +PD  +YN +
Sbjct: 539 GLK--PNTITYTTMISGLAKAG-----------NILEASGLFSRFKANGGIPDSASYNAM 585

Query: 294 IDGCCKTYRIERALELFDDMNKKGC 318
           I+G     +   A  LF++   KGC
Sbjct: 586 IEGLSSANKAMDAYALFEETRLKGC 610



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 13/177 (7%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           + NG  +     + LI   G+ G ++EA      + Q    P+VY +N +++AL +    
Sbjct: 431 KSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 490

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           N+A    + M+    +CPP+  TY+ILI+  C+            R+  +A   ++ M  
Sbjct: 491 NEALICFQSMK--DLKCPPNQITYSILINGLCRV-----------RKFNKAFVFWQEMQK 537

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
            G  P+ + Y  +I G  K   I  A  LF      G IP+  +YN+ I   S  N+
Sbjct: 538 LGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANK 594



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 109/263 (41%), Gaps = 16/263 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +  R   +    +   DM R G    V T  V  +I  L +   + EA + F  M    C
Sbjct: 168 MLCREGKLNAALEIRDDMERAGLFPNVLT--VNIMIDRLCKAQKLEEACSIFEGMDDKVC 225

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+   ++ +I+ L + G  + A  L E+M   G    P    YT LI S+ K G     
Sbjct: 226 TPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGH--VPGAIVYTSLIRSFFKCG----- 278

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R  + + +++ M+  G  PD+   N  +D   K    E+   LF ++N  G IP
Sbjct: 279 ------RKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIP 332

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +  +Y+  I         ++  E+   M+     V  + +Y  +I   C++G+V +A   
Sbjct: 333 DARSYSILIHGLVKAGLANETYELFYAMKE-QGCVLDTHAYNAVIDGFCKSGKVNKAYQL 391

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L E+   G  P   TY  V D L
Sbjct: 392 LEEMKVKGHPPTVVTYGSVIDGL 414



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 28/246 (11%)

Query: 217 VGNFNKARFLLEQME----LPGFRCPPDVYTYTILISSYCKYGMQ-----TGCRKAIRRR 267
           V N  K+R L E  +    +  F+  P    YTILI    K G+        C+     R
Sbjct: 17  VANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIG---KVGLMLLFPWVLCKA---NR 70

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + EA  LF  +     VP   AYN +I G     + + A  L +    KG IP+ + YN 
Sbjct: 71  LDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNC 130

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            +        +++A+ +  +M+     VP   +Y  +I  LC  G++  A +   ++   
Sbjct: 131 ILTCLGKKRRVEEALRIFEEMK--RDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERA 188

Query: 388 GSVPREYTYKLVCDALNAA---EEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELL 444
           G  P   T  ++ D L  A   EE   + +G+  ++       F  ++          L 
Sbjct: 189 GLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLI--------DGLG 240

Query: 445 KCGEID 450
           KCG +D
Sbjct: 241 KCGRVD 246


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 133/271 (49%), Gaps = 20/271 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           G  V   ++  LIK L +    ++A+   F RM +    PDV++YN +I  LC      +
Sbjct: 124 GWRVQNVTLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQE 183

Query: 223 ARFLLEQMELPG-FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           A  LL  M   G + C P+V +Y+ +I  + K G            + +A  LF  M+ +
Sbjct: 184 ALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEG-----------EVDKAYFLFDEMIGQ 232

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           GF PDVV Y+ LIDG CK   + +A  +   M  KG +PN  TYN  IR Y  + ++++A
Sbjct: 233 GFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEA 292

Query: 342 IEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           + +++KM     G+ P   +Y  +I   C+ GR  EAR     +V  G  P    Y ++ 
Sbjct: 293 VRLLKKMS--GSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILL 350

Query: 401 DALNAAEEPSLLD--DGLRKRIRDGIEYRFR 429
                A + +L+D  D L   IRDGI +  R
Sbjct: 351 HGY--ATKGALIDVRDLLDLMIRDGIPFEHR 379



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 131/272 (48%), Gaps = 40/272 (14%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G V++A+  F  M+Q   RPDV +Y+ VI+ LC++G    A +   QM   G
Sbjct: 384 LICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEG 443

Query: 235 FRCPPDVYTYTILISSYCKYG---------------------------MQTGCRKAIRRR 267
               P++ ++T LI   C  G                           M   C++    R
Sbjct: 444 L--SPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEG---R 498

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + EA   F +++  G  P+VV+YN LIDG C   +++ +++ FD M   G  P+  TYN+
Sbjct: 499 VVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNA 558

Query: 328 FIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            +  Y     ++ A+ + R+M  +++     TS+    I+H L +AGR++ AR+   ++V
Sbjct: 559 LLNGYFKNGRVEDALALYREMFRKDVKFCAITSN---IILHGLFQAGRIVAARELYMKMV 615

Query: 386 DGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           D G+  R  TY  V   L    E S +D+ LR
Sbjct: 616 DRGTQLRIETYNTVLGGLC---ENSCVDEALR 644



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 133/348 (38%), Gaps = 73/348 (20%)

Query: 148 VKGLWDFLK-----DMSRRGNGELVTTSSV---TCLIKVLGEEGLVNEALATFYRMKQ-- 197
           +KGL D  +     DM  R   EL  T  V     LIK L  E    EAL     M    
Sbjct: 136 IKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADG 195

Query: 198 -FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
            + C P+V +Y+ +I+   + G  +KA FL ++M   GF  PPDV TY+ LI   CK   
Sbjct: 196 GYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGF--PPDVVTYSSLIDGLCKAQA 253

Query: 257 QTGCRKAIRR------------------------RIWEANHLFRLMLFKGFVPDVVAYNC 292
                  ++                         ++ EA  L + M   G  PDVV Y  
Sbjct: 254 MNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYIL 313

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTY--------------------------- 325
           LI   CK  R   A  +FD M +KG  PN   Y                           
Sbjct: 314 LIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDG 373

Query: 326 --------NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
                   N  I  Y+    +DKA+    +M+  N   P   SY+ +IH LC+ GRV +A
Sbjct: 374 IPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQ-NGLRPDVVSYSTVIHILCKIGRVEDA 432

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
                ++V  G  P   ++  +   L +  E   +++   + I  GI 
Sbjct: 433 VYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIH 480



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 116/264 (43%), Gaps = 29/264 (10%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G +  T +   +I+     G + EA+    +M     +PDV  Y ++I   C++G   +A
Sbjct: 268 GVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEA 327

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTG------------ 259
           R + + M   G +  P+   Y IL+  Y   G            ++ G            
Sbjct: 328 RSVFDSMVRKGQK--PNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILI 385

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           C  A    + +A   F  M   G  PDVV+Y+ +I   CK  R+E A+  F+ M  +G  
Sbjct: 386 CAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLS 445

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           PN +++ S I     + E  K  E+  +M  +N G+ P +     I+  LC+ GRV+EA+
Sbjct: 446 PNIISFTSLIHGLCSIGEWKKVEELAFEM--INRGIHPDAIFMNTIMDNLCKEGRVVEAQ 503

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           DF   ++  G  P   +Y  + D 
Sbjct: 504 DFFDMVIHIGVKPNVVSYNTLIDG 527



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 14/221 (6%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L +EG V EA   F  +     +P+V +YN +I+  C VG  +++    ++M   G R  
Sbjct: 493 LCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLR-- 550

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD +TY  L++ Y K G           R+ +A  L+R M  K      +  N ++ G  
Sbjct: 551 PDSWTYNALLNGYFKNG-----------RVEDALALYREMFRKDVKFCAITSNIILHGLF 599

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           +  RI  A EL+  M  +G      TYN+ +      + +D+A+ M   +++    +   
Sbjct: 600 QAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVW 659

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           + +  +I+AL + GR+ EA+   + +V  G VP   TY L+
Sbjct: 660 T-FNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLM 699



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 17/212 (8%)

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           ++M R+       TS++  ++  L + G +  A   + +M     +  +  YN V+  LC
Sbjct: 577 REMFRKDVKFCAITSNI--ILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLC 634

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
                ++A  + E +    F    DV+T+ I+I++  K G           RI EA  LF
Sbjct: 635 ENSCVDEALRMFEDLRSKEFEL--DVWTFNIVINALLKVG-----------RIDEAKSLF 681

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             M+ +G VP V+ Y+ +I    +   +E + +LF  M K GC  +    N  IR     
Sbjct: 682 SAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNVIIRRLLEK 741

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSS--YTPII 365
            ++ +A   + K+   N  V  S++    PI+
Sbjct: 742 GDVRRAGTYLTKIDEKNFSVEASTAALLIPIV 773


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 141/262 (53%), Gaps = 18/262 (6%)

Query: 143 ARGNNVKGLWDFLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           ++  +V   +D   +M ++R + ++VT S+   LI+     G + +A+  F +M     +
Sbjct: 219 SKDKHVNDAFDLYSEMVAKRISPDVVTYSA---LIRGFFIVGKLKDAIDLFNKMILENIK 275

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDVY +N++++  C+ G   KA+ +L+ M +   +  P+V T+  L+  +CK        
Sbjct: 276 PDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIK--PNVSTFNTLVDGFCK-------- 325

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               R++ E   +F +M+ +G  P+VV Y  L+DG C   ++ +A ++F+ M+++G   N
Sbjct: 326 ---DRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTAN 382

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             +YN  I  +  + ++DKA+++  +M +  H +P   +Y  +I  LC++G++  A   +
Sbjct: 383 VHSYNIMINGFCKIKKVDKAMKLFIEMHH-KHIIPDVVTYNSLIDGLCKSGKISYAFQLV 441

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+ D G  P   TY  + +AL
Sbjct: 442 NEMHDRGQPPNIITYNSILNAL 463



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 121/247 (48%), Gaps = 18/247 (7%)

Query: 160 RRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           RR +G+LV  ++V    +I  + ++  VN+A   +  M   R  PDV  Y+ +I     V
Sbjct: 197 RRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIV 256

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G    A  L  +M L   +  PDVYT+ IL+  +CK G           R+ +A ++  +
Sbjct: 257 GKLKDAIDLFNKMILENIK--PDVYTFNILVDGFCKEG-----------RLKKAKNVLDM 303

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+ +   P+V  +N L+DG CK  +++    +F  M K+G  PN VTY S +  Y +V +
Sbjct: 304 MMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQ 363

Query: 338 IDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           ++KA ++   M     GV  +  SY  +I+  C+  +V +A     E+     +P   TY
Sbjct: 364 VNKAKKIFNTMS--QRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTY 421

Query: 397 KLVCDAL 403
             + D L
Sbjct: 422 NSLIDGL 428



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 107/218 (49%), Gaps = 28/218 (12%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
            S+   L+    ++  + E    F  M +   +P+V  Y  +++  C V   NKA+ +  
Sbjct: 313 VSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFN 372

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M   G     +V++Y I+I+ +CK            +++ +A  LF  M  K  +PDVV
Sbjct: 373 TMSQRG--VTANVHSYNIMINGFCKI-----------KKVDKAMKLFIEMHHKHIIPDVV 419

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN LIDG CK+ +I  A +L ++M+ +G  PN +TYNS +              ++ K+
Sbjct: 420 TYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILN------------ALLTKL 467

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           +  + G+ P   + T +I  LC++G++  AR    +L+
Sbjct: 468 K--DQGIQPNMHTDTILIKGLCQSGKLEAARKVFEDLL 503



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + GL+  A +   ++ +    PD+   N  I   C  G  ++A    +++   G
Sbjct: 109 LINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALG 168

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F    D  +Y  LI+  CK G      + +RR   +   L           + V YN +I
Sbjct: 169 FHL--DQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQL-----------NAVMYNTVI 215

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K   +  A +L+ +M  K   P+ VTY++ IR + +V ++  AI++  KM  L + 
Sbjct: 216 DGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMI-LENI 274

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P   ++  ++   C+ GR+ +A++ L  ++     P   T+  + D  
Sbjct: 275 KPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGF 323



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 22/216 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+ A++ F  +         + +N ++ +L +  +++    L +QME  G    P+  T+
Sbjct: 49  VDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGIN--PNFVTF 106

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI+ +C+ G+           I  A  +   +L  G+ PD++  N  I G C   +I 
Sbjct: 107 NILINCFCQLGL-----------IPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIH 155

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR----KMQNLNHGVPTSSS 360
           +AL   D +   G   ++V+Y + I     V E   A++++R    K+  LN     +  
Sbjct: 156 QALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLN-----AVM 210

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           Y  +I  + +   V +A D  +E+V     P   TY
Sbjct: 211 YNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTY 246


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 125/263 (47%), Gaps = 29/263 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++ V+ + G    A+    +M++   + D   Y+++I+ LC+ G+ + A  L  +ME+ G
Sbjct: 332 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 391

Query: 235 FRCPPDVYTYTILISSYCKYGMQTG----CRKAIRRRI--------------------WE 270
                ++ TY ILI  +C  G         R  I+R+I                     E
Sbjct: 392 I--TTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLRE 449

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L + M+ +G  PD + Y  LIDG CK   +++A ++ D M  KGC PN  T+N  I 
Sbjct: 450 AEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILIN 509

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            Y   N ID  +E+ RKM +L   V  + +Y  +I   CE G++  A++   E+V     
Sbjct: 510 GYCKANRIDDGLELFRKM-SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP 568

Query: 391 PREYTYKLVCDAL--NAAEEPSL 411
           P   TYK++ D L  N   E +L
Sbjct: 569 PNIVTYKILLDGLCDNGESEKAL 591



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 120/262 (45%), Gaps = 28/262 (10%)

Query: 150 GLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           G WD     L+DM +R     V T SV  LI    +EG + EA      M      PD  
Sbjct: 410 GRWDDGAKLLRDMIKRKINPNVVTFSV--LIDSFVKEGKLREAEELHKEMIHRGIAPDTI 467

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            Y  +I+  C+  + +KA  +++ M   G  C P++ T+ ILI+ YCK            
Sbjct: 468 TYTSLIDGFCKENHLDKANQMVDLMVSKG--CDPNIRTFNILINGYCK-----------A 514

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            RI +   LFR M  +G V D V YN LI G C+  ++  A ELF +M  +   PN VTY
Sbjct: 515 NRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 574

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQ----NLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
              +       E +KA+E+  K++     L+ G+     Y  IIH +C A +V +A D  
Sbjct: 575 KILLDGLCDNGESEKALEIFEKIEKSKMELDIGI-----YNIIIHGMCNASKVDDAWDLF 629

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
             L   G  P   TY ++   L
Sbjct: 630 CSLPLKGVKPGVKTYNIMIGGL 651



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 118/270 (43%), Gaps = 43/270 (15%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
            ++A+  F  M   R  P V  ++ + +A+ +   ++    L +QMEL G     ++YT 
Sbjct: 167 ADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGI--AHNLYTL 224

Query: 245 TILISSYCKYGMQTGCRK------------------------------AIRRRIWEANHL 274
           +I+I+ +C+      CRK                               +  R+ EA  L
Sbjct: 225 SIMINCFCR------CRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALEL 278

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
              M+  G  PD++  N L++G C + +   A+ L D M + GC PN VTY   +     
Sbjct: 279 VDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCK 338

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
             +   A+E++RKM+  N  +  +  Y+ II  LC+ G +  A +   E+   G      
Sbjct: 339 SGQTALAMELLRKMEERNIKL-DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNII 397

Query: 395 TYKLV----CDALNAAEEPSLLDDGLRKRI 420
           TY ++    C+A    +   LL D ++++I
Sbjct: 398 TYNILIGGFCNAGRWDDGAKLLRDMIKRKI 427



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 15/218 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + + N +    +  + MS RG   +  T +   LI+   E G +N A   F  M   +  
Sbjct: 511 YCKANRIDDGLELFRKMSLRG--VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP 568

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  Y ++++ LC  G   KA  + E++E    +   D+  Y I+I   C         
Sbjct: 569 PNIVTYKILLDGLCDNGESEKALEIFEKIEKS--KMELDIGIYNIIIHGMCNAS------ 620

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ +A  LF  +  KG  P V  YN +I G CK   +  A  LF  M + G  P+
Sbjct: 621 -----KVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 675

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             TYN  IR +    +  K+++++ +++     V  S+
Sbjct: 676 GWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDAST 713


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 120/239 (50%), Gaps = 17/239 (7%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRM---KQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           T  S   ++ V+ +EGL + AL  +  +   K     P+V  +N+VI A+C+VG  + A 
Sbjct: 160 TGKSFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAI 219

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            +   M +   +C PDVYTY  L+   CK             RI EA  L   M   G  
Sbjct: 220 QVFRDMTIR--KCEPDVYTYCTLMDGLCK-----------ADRIDEAVSLLDEMQIDGCF 266

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P  V +N LI+G CK   + RA +L D+M  KGCIPN VTYN+ I    +  +++KAI +
Sbjct: 267 PSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISL 326

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + +M + +  VP   +Y  II+ L + GR L+    LA + + G    EY Y  +   L
Sbjct: 327 LDRMVS-SKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGL 384



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 17/243 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  +G + +A++   RM   +C P+V  Y  +IN L + G       +L  ME  G
Sbjct: 310 LIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERG 369

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           + C  + Y Y+ LIS   K G           +  EA HLF+ M  KG+  + + Y+ +I
Sbjct: 370 Y-CVNE-YVYSTLISGLFKEG-----------KSQEAMHLFKEMTVKGYELNTIVYSAVI 416

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG C+  + + A+E+  +M  KGC PN  T +S ++ +       +A+E+ + M   N  
Sbjct: 417 DGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNF- 475

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
                 Y+ +IH LC+ G+V EA     +++  G  P    Y  + + L+ A    L++D
Sbjct: 476 TQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIA---GLVED 532

Query: 415 GLR 417
            ++
Sbjct: 533 AMQ 535



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 18/220 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L +EG   EA+  F  M       +   Y+ VI+ LCR G  + A  +L +M   G
Sbjct: 380 LISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKG 439

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+ YT + L+  + + G      +A+   +W+       M    F  + V Y+ LI
Sbjct: 440 --CTPNAYTCSSLMKGFFEAG---NSHRAVE--VWKD------MAKHNFTQNEVCYSVLI 486

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G CK  +++ A+ ++  M  KGC P+ V Y+S I   S+   ++ A+++  +M  L  G
Sbjct: 487 HGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEM--LCQG 544

Query: 355 ---VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
               P   +Y  +++ LC+   +  A D L  ++D G  P
Sbjct: 545 PDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDP 584



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 13/159 (8%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           N  TC  +   F    N     +  KDM++    +     SV  LI  L ++G V EA+ 
Sbjct: 443 NAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSV--LIHGLCKDGKVKEAMM 500

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            + +M    C+PDV AY+ +IN L   G    A  L  +M   G    PDV TY IL+++
Sbjct: 501 VWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNT 560

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
            CK       + +I R I     L   ML +G  PD+V 
Sbjct: 561 LCK-------QSSISRAI----DLLNSMLDRGCDPDLVT 588


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 119/231 (51%), Gaps = 18/231 (7%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M    C PD++ YN +I  LC+ G    AR L+ +M++ G  C P+V TYTILI  +CK 
Sbjct: 5   MLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKG--CEPNVITYTILIDRFCKE 62

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           R+ EA ++   M  KG   + V YNCLI   CK  +++ AL +F DM+
Sbjct: 63  G-----------RLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMS 111

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
            KGC P+  T+NS I     VN+ ++A+ + + M  L   +  + +Y  +IHA    G +
Sbjct: 112 SKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML-LEGVIANTITYNTLIHAFLRRGAM 170

Query: 375 LEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRIR 421
            EA   + +++  G    + TY    K +C A N  +  +L +D + K + 
Sbjct: 171 QEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLN 221



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 116/246 (47%), Gaps = 18/246 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L +MS  G G  +      CLI  L ++  V +AL  F  M    C+PD++ +N +I 
Sbjct: 70  NVLDEMS--GKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIF 127

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+V  F +A  L + M L G     +  TY  LI ++ +           R  + EA 
Sbjct: 128 GLCKVNKFEEALGLYQDMLLEGV--IANTITYNTLIHAFLR-----------RGAMQEAL 174

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L   MLF+G   D + YN LI   C+   IE+ L LF+DM  KG  PN ++ N  I   
Sbjct: 175 KLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGL 234

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                I  A+E +R M  ++ G+ P   +Y  +I+ LC+ GR  EA +   +L   G  P
Sbjct: 235 CRTGNIQHALEFLRDM--IHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICP 292

Query: 392 REYTYK 397
              TY 
Sbjct: 293 DAITYN 298



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L ++G +  A      M+   C P+V  Y ++I+  C+ G   +AR +L++M   G
Sbjct: 20  LILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKG 79

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                +   Y  LIS+ CK             ++ +A ++F  M  KG  PD+  +N LI
Sbjct: 80  L--ALNAVGYNCLISALCK-----------DEKVQDALNMFGDMSSKGCKPDIFTFNSLI 126

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G CK  + E AL L+ DM  +G I N +TYN+ I  +     + +A++++  M  L  G
Sbjct: 127 FGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM--LFRG 184

Query: 355 VPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P    +Y  +I ALC AG + +      +++  G  P   +  ++ + L
Sbjct: 185 CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGL 234



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 6/128 (4%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEAL 189
           N ++C  +     R  N++   +FL+DM  RG   ++VT +S   LI  L + G   EAL
Sbjct: 223 NNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNS---LINGLCKTGRAQEAL 279

Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
             F +++     PD   YN +I+  C+ G F+ A  LL +    GF   P+  T+ IL+S
Sbjct: 280 NLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF--IPNEVTWYILVS 337

Query: 250 SYCKYGMQ 257
           ++ K G Q
Sbjct: 338 NFIKEGDQ 345



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           + + M   GC P+  TYN+ I        +  A E+M +MQ +    P   +YT +I   
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQ-IKGCEPNVITYTILIDRF 59

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           C+ GR+ EAR+ L E+   G       Y  +  AL   E+
Sbjct: 60  CKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEK 99


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 143/308 (46%), Gaps = 18/308 (5%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
           F+ W      + H  ++   +  V A+      ++    DM   G G +  T +   L++
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDM--LGAGCVPNTYTYGYLLR 60

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
            L +     EA + F  M    C P+V++Y+++I  LCR    ++A  LL +M   G + 
Sbjct: 61  SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQ- 119

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            P+V TY  L+S  CK G           ++ EA  LF  M+++G  PD V YN LIDG 
Sbjct: 120 -PNVVTYGSLLSGLCKMG-----------KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGF 167

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VP 356
            K   +  A  LF++M +KGCIP   TYNS +  +S   E  +   + + M  L  G VP
Sbjct: 168 SKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDM--LRQGCVP 225

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              ++  ++   C+ G ++EA     E+   G  P   +Y  +   + +  +P      L
Sbjct: 226 NIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLL 285

Query: 417 RKRIRDGI 424
           R+ IR G+
Sbjct: 286 REMIRSGV 293



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 119/262 (45%), Gaps = 16/262 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             RG  V    + L +M   G+   V T     L+  L + G + EA+  F RM    C 
Sbjct: 97  LCRGQKVDEAAELLNEMIDGGHQPNVVTYGS--LLSGLCKMGKLKEAVDLFSRMVYRGCP 154

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YNV+I+   + G+  +A  L E+M   G  C P V+TY  L+S + + G      
Sbjct: 155 PDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKG--CIPTVFTYNSLLSGFSRKG------ 206

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                       LF+ ML +G VP++  +N L+DG CK   +  A  LF +M   GC P+
Sbjct: 207 -----EFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPD 261

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            V+YN+ +R      +  +A  ++R+M     G P   SY  +I    ++G +  A    
Sbjct: 262 VVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVG-PDIVSYNILIDGYSKSGALDHAIKLF 320

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+   G  P  ++Y  + D L
Sbjct: 321 YEIPKSGLEPDAFSYSTIIDCL 342



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 120/258 (46%), Gaps = 16/258 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F++  ++   +   ++M  +G   + T  +   L+     +G      + F  M +  C 
Sbjct: 167 FSKKGDMGEAYRLFEEMLEKGC--IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCV 224

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+++ +N +++  C++G+  +A  L   +E+    CPPDV +Y  L+   C  G      
Sbjct: 225 PNIFTFNNLLDGFCKMGDMVEAHRLF--LEMRSLGCPPDVVSYNTLMRGMCSKG------ 276

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                +  EA  L R M+  G  PD+V+YN LIDG  K+  ++ A++LF ++ K G  P+
Sbjct: 277 -----KPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPD 331

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             +Y++ I       ++  A  + + M   N   P ++   P++  LC   R+ E+ +  
Sbjct: 332 AFSYSTIIDCLCRAGKVGAAFVVFKDMIA-NGSAPDAAVVIPLVIGLCRGERLTESCELF 390

Query: 382 AELVDGGSVPREYTYKLV 399
             +V    VP    Y L+
Sbjct: 391 QAMVKFECVPLIPEYNLL 408



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 94/234 (40%), Gaps = 34/234 (14%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F+R      +    KDM R+G    + T     L+    + G + EA   F  M+   C 
Sbjct: 202 FSRKGEFGRVQSLFKDMLRQGCVPNIFT--FNNLLDGFCKMGDMVEAHRLFLEMRSLGCP 259

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM----- 256
           PDV +YN ++  +C  G  ++A+ LL +M   G    PD+ +Y ILI  Y K G      
Sbjct: 260 PDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGV--GPDIVSYNILIDGYSKSGALDHAI 317

Query: 257 -------QTG---------------CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                  ++G               CR     ++  A  +F+ M+  G  PD      L+
Sbjct: 318 KLFYEIPKSGLEPDAFSYSTIIDCLCRAG---KVGAAFVVFKDMIANGSAPDAAVVIPLV 374

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            G C+  R+  + ELF  M K  C+P    YN  +         D   E+  ++
Sbjct: 375 IGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHEL 428



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L++M R G G  + + ++  LI    + G ++ A+  FY + +    PD ++Y+ +I+ 
Sbjct: 284 LLREMIRSGVGPDIVSYNI--LIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDC 341

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LCR G    A  + + M   G    PD      L+   C+             R+ E+  
Sbjct: 342 LCRAGKVGAAFVVFKDMIANG--SAPDAAVVIPLVIGLCR-----------GERLTESCE 388

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
           LF+ M+    VP +  YN L+   CK  R +   E+F ++ ++G  P+
Sbjct: 389 LFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPD 436


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 121/246 (49%), Gaps = 26/246 (10%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A+  F  MK   C+PD + Y+++I++LC      +A  LL++ME  G  C  +   Y  L
Sbjct: 387 AMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSG--CARNAVVYNTL 444

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I   CK            RRI +A  +F  M   G     V YN LIDG CK  R+E A 
Sbjct: 445 IDGLCK-----------SRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEAS 493

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           +L D M  +G  P++ TYNS + Y+  V +I+KA ++++ M + N   P   +Y  +I  
Sbjct: 494 QLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMAS-NGCEPDIFTYGTLIGG 552

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYR 427
           LC AGRV  A   L  +   G V   + Y  V  AL            +RKR ++G+   
Sbjct: 553 LCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQAL-----------FMRKRTKEGMRL- 600

Query: 428 FRQVMK 433
           FR++M+
Sbjct: 601 FREMME 606



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 142/313 (45%), Gaps = 32/313 (10%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           +E+T   +   F    ++ G     K M   G G L+T  SV  L+    +EG V EAL 
Sbjct: 192 DEITFTTLMQGFIEEGDLNGALKMKKQM--LGYGCLLTNVSVKVLVNGFCKEGRVEEALR 249

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
               + +    PD   +N ++N  CR+GN N A  +++ M   GF   PDVYTY  LIS 
Sbjct: 250 FVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFD--PDVYTYNSLISG 307

Query: 251 YCKYGMQTGCRKAIRR------------------------RIWEANHLFRLMLFKGFVPD 286
            CK G      + +++                         I  A  L R+++ KG +PD
Sbjct: 308 MCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPD 367

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           V  +N LI G C +   + A+E+F++M  KGC P+  TY+  I        + +A+ +++
Sbjct: 368 VCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLK 427

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL--- 403
           +M++ +     +  Y  +I  LC++ R+ +A +   ++   G      TY  + D L   
Sbjct: 428 EMES-SGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKN 486

Query: 404 NAAEEPSLLDDGL 416
              EE S L D +
Sbjct: 487 KRVEEASQLMDQM 499



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 122/277 (44%), Gaps = 53/277 (19%)

Query: 164 GELVTTSSVTCLIKVLG-----------------------------------EEGLVNEA 188
           G ++  S+   LIK L                                    EEG +N A
Sbjct: 153 GIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGA 212

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTIL 247
           L    +M  + C     +  V++N  C+ G   +A RF+LE  E  GF   PD  T+  L
Sbjct: 213 LKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSE-EGFS--PDQVTFNSL 269

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           ++ +C+ G            + +A  +   M+ KGF PDV  YN LI G CK    E+A+
Sbjct: 270 VNGFCRIG-----------NVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAI 318

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIH 366
           E+   M  + C PN VTYN+ I      NEI+ A ++ R +  ++ G +P   ++  +I 
Sbjct: 319 EILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARIL--VSKGLLPDVCTFNTLIQ 376

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            LC +     A +   E+ + G  P E+TY ++ D+L
Sbjct: 377 GLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSL 413



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 105/262 (40%), Gaps = 62/262 (23%)

Query: 201 RPDVYAYNVVIN-----------------------------------ALCRVGNFNKARF 225
           +PD   YN+ +N                                   ALC+      A  
Sbjct: 120 KPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAIL 179

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------------------- 266
           +LE+M   G +  PD  T+T L+  + + G   G  K  ++                   
Sbjct: 180 MLEEMANHGLK--PDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNG 237

Query: 267 -----RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ EA      +  +GF PD V +N L++G C+   +  AL++ D M +KG  P+
Sbjct: 238 FCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPD 297

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TYNS I     + E +KAIE++++M  L    P + +Y  +I ALC+   +  A D  
Sbjct: 298 VYTYNSLISGMCKLGEFEKAIEILQQMI-LRECSPNTVTYNTLISALCKENEIEAATDLA 356

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
             LV  G +P   T+  +   L
Sbjct: 357 RILVSKGLLPDVCTFNTLIQGL 378



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 15/220 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + +A   F +M+          YN +I+ LC+     +A  L++QM + G +  PD +TY
Sbjct: 454 IEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLK--PDKFTY 511

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L++ +C+ G            I +A  + + M   G  PD+  Y  LI G C+  R++
Sbjct: 512 NSLLTYFCRVG-----------DIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVD 560

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A +L   +  KG +     YN  I+   +     + + + R+M       P + ++  +
Sbjct: 561 VASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMME-KSDPPDALTHKIV 619

Query: 365 IHALCEAGR-VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              LC  G  + EA DF  E+++ G +P   ++  + + L
Sbjct: 620 FRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGL 659



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 100/228 (43%), Gaps = 31/228 (13%)

Query: 167 VTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           V+ SSVT   LI  L +   V EA     +M     +PD + YN ++   CRVG+  KA 
Sbjct: 469 VSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAG 528

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            +++ M   G  C PD++TY  LI   C+ G           R+  A+ L R +  KG V
Sbjct: 529 DIVQTMASNG--CEPDIFTYGTLIGGLCRAG-----------RVDVASKLLRSVQMKGIV 575

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY-----SVVNEID 339
               AYN +I       R +  + LF +M +K   P+ +T+    R        +   ID
Sbjct: 576 LTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAID 635

Query: 340 KAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             +EM+ K      G+ P   S+  +   LC     L   D L EL++
Sbjct: 636 FTVEMLEK------GILPEFPSFGFLAEGLCS----LSMEDTLIELIN 673



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 101/205 (49%), Gaps = 20/205 (9%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP-GFRCPPDVYTYTILISSYC 252
           ++K     P+   +  +I +     NF++   LL+ +E   GF+  PD   Y I +++  
Sbjct: 80  QLKSSGSIPNATTFATLIQSFT---NFHEIENLLKILENELGFK--PDTNFYNIALNALV 134

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           +             ++     L   M+ +G V DV  +N LI   CK +++  A+ + ++
Sbjct: 135 E-----------DNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEE 183

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEA 371
           M   G  P+ +T+ + ++ +    +++ A++M ++M  L +G + T+ S   +++  C+ 
Sbjct: 184 MANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQM--LGYGCLLTNVSVKVLVNGFCKE 241

Query: 372 GRVLEARDFLAELVDGGSVPREYTY 396
           GRV EA  F+ E+ + G  P + T+
Sbjct: 242 GRVEEALRFVLEVSEEGFSPDQVTF 266


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 130/251 (51%), Gaps = 20/251 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I+ L + G V +ALA    M Q  C+P V  Y V++ A+C+   F +A  +L++M  
Sbjct: 145 TPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRA 204

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C P++ TY ++I+  C+ G           R+ +A  +   +   GF PD+V+Y  
Sbjct: 205 KG--CTPNIVTYNVIINGMCREG-----------RVDDAKEILNRLSSYGFQPDIVSYTT 251

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           ++ G C   R +    LF +M  K C+PN VT++  +R++     +++AI+++++M    
Sbjct: 252 VLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMS--Q 309

Query: 353 HG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAE 407
           HG  P ++    +I+A+C+ GRV +A DFL  +   G  P   +Y  V    C A     
Sbjct: 310 HGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEH 369

Query: 408 EPSLLDDGLRK 418
              LL + +RK
Sbjct: 370 AKELLPEMVRK 380



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 112/237 (47%), Gaps = 19/237 (8%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNK 222
           GE       T LI+ L   G  ++A A   R  +    P DV+AYN ++   CR G  + 
Sbjct: 69  GEAPDVYLCTKLIRNLCRRGRTSDA-ARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDA 127

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           AR L+  M +P     PD YTYT +I   C  G           R+ +A  L   ML +G
Sbjct: 128 ARRLIASMPVP-----PDAYTYTPIIRGLCDRG-----------RVGDALALLDDMLQRG 171

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P VV Y  L++  CK+     A+ + D+M  KGC PN VTYN  I        +D A 
Sbjct: 172 CQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAK 231

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           E++ ++ +     P   SYT ++  LC A R  + +   AE+VD   VP E T+ ++
Sbjct: 232 EILNRLSSYGFQ-PDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDML 287



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 139/302 (46%), Gaps = 26/302 (8%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           NE+T   +   F RG  V+     L+ MS+ G     T  ++  +I  + ++G V++A  
Sbjct: 280 NEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNI--VINAICKQGRVDDAYD 337

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
               M  + C PD  +Y  V+  LCR G +  A+ LL +M      CPP+  T+   I  
Sbjct: 338 FLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRK--NCPPNEVTFNTFICI 395

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            C+ G+           I +A  L  LM   G    +V YN L+ G C   R++ ALELF
Sbjct: 396 LCQKGL-----------IEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELF 444

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALC 369
           +++    C PN +TY + +        +D A E++  M  +    P ++ ++  ++   C
Sbjct: 445 NNLP---CEPNTITYTTLLTGLCHAERLDAAAELLAGM--IQKDCPLNAVTFNVLVSFFC 499

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRKRIR-DGI 424
           + G V EA + + ++++ G  P   T+  + D +    N+ E   LL   + K +  D I
Sbjct: 500 QKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTI 559

Query: 425 EY 426
            Y
Sbjct: 560 TY 561



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 142/328 (43%), Gaps = 33/328 (10%)

Query: 86  EAYNIANNVLVLGPAAYRDPQKVTL-----GLNKATEFYHWVERFFDFFH-----NEMTC 135
           +AY+  NN+ + G     +P  ++      GL +A  + H  E   +        NE+T 
Sbjct: 334 DAYDFLNNMGMYGC----NPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTF 389

Query: 136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM 195
                +  +   ++     ++ M   G    + T +   L+     +G V+ AL  F   
Sbjct: 390 NTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNA--LVHGFCVQGRVDSALELF--- 444

Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
               C P+   Y  ++  LC     + A  LL  M      CP +  T+ +L+S +C+ G
Sbjct: 445 NNLPCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKD--CPLNAVTFNVLVSFFCQKG 502

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                       + EA  L   M+  G  P+++ +N L+DG  K    E ALEL   +  
Sbjct: 503 F-----------VEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVS 551

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
           KG   + +TY+S +   S  +  ++AI+M+  +Q++    P    Y  I+ ALC+     
Sbjct: 552 KGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMR-PKVGMYNKILFALCKRCETD 610

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           +A DF A +V  G +P E TY ++ + L
Sbjct: 611 QAIDFFAYMVSNGCMPNESTYIILIEGL 638



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 132/326 (40%), Gaps = 72/326 (22%)

Query: 148 VKGLWD---------FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
           ++GL D          L DM +RG    V T +V  L++ + +     EA+     M+  
Sbjct: 148 IRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTV--LLEAVCKSSGFGEAMNVLDEMRAK 205

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF----------------------- 235
            C P++  YNV+IN +CR G  + A+ +L ++   GF                       
Sbjct: 206 GCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDV 265

Query: 236 ----------RCPPDVYTYTILISSYCKYGM------------QTGCR----------KA 263
                     +C P+  T+ +L+  +C+ GM            Q GC            A
Sbjct: 266 KVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINA 325

Query: 264 I--RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
           I  + R+ +A      M   G  PD ++Y  ++ G C+  R E A EL  +M +K C PN
Sbjct: 326 ICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPN 385

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VT+N+FI        I++AI+++  M      V    +Y  ++H  C  GRV  A +  
Sbjct: 386 EVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGI-VTYNALVHGFCVQGRVDSALELF 444

Query: 382 AELVDGGSVPREYTYKLVCDALNAAE 407
             L      P   TY  +   L  AE
Sbjct: 445 NNL---PCEPNTITYTTLLTGLCHAE 467



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 8/158 (5%)

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
           R   R  + EA  L      +G  PDV     LI   C+  R   A  +       G   
Sbjct: 48  RLIARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPV 107

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +   YN+ +  Y     +D A  ++  M       P + +YTPII  LC+ GRV +A   
Sbjct: 108 DVFAYNTLVAGYCRYGRLDAARRLIASMPV----PPDAYTYTPIIRGLCDRGRVGDALAL 163

Query: 381 LAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDD 414
           L +++  G  P   TY +    VC +    E  ++LD+
Sbjct: 164 LDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDE 201



 Score = 38.1 bits (87), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           + +T SSV   + VL  E    EA+   + ++    RP V  YN ++ ALC+    ++A 
Sbjct: 557 DTITYSSV---VDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAI 613

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
                M   G  C P+  TY ILI      G+
Sbjct: 614 DFFAYMVSNG--CMPNESTYIILIEGLAHEGL 643


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 14/242 (5%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G   TT S   LI  L +   ++E       M++ R  PDV+ Y+V+I+ LC+ G  
Sbjct: 250 RKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRL 309

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           + A  L ++M+  G R  P+  T+T LI   C+            RRI  A + +  ML 
Sbjct: 310 DVAEQLFDEMQQRGLR--PNGITFTALIDGQCR-----------SRRIDSAMNTYHQMLT 356

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  PD+V YN L++G CK   + +A +L D+M   G  P+++TY + I  Y    +++ 
Sbjct: 357 MGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLES 416

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A+E +RK  N    V  + ++T +I   C  GRV +A   L E+V+ G  P + TY +V 
Sbjct: 417 AME-IRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVI 475

Query: 401 DA 402
           D 
Sbjct: 476 DG 477



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 24/268 (8%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE      R +  + L+D ++    R NG      + T LI        ++ A+ T+++
Sbjct: 304 CKE-----GRLDVAEQLFDEMQQRGLRPNG-----ITFTALIDGQCRSRRIDSAMNTYHQ 353

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M     +PD+  YN ++N LC+VG+ NKAR L+++M + G +  PD  TYT LI  YCK 
Sbjct: 354 MLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMK--PDKITYTTLIDGYCKE 411

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G            +  A  + + M  +G V D VA+  LI G C+  R+  A     +M 
Sbjct: 412 G-----------DLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMV 460

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           + G  P+  TY   I  Y     +    +++++MQ +N   P   +Y  +++ LC+ G++
Sbjct: 461 EAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQ-INGHKPGVITYNVLMNGLCKQGQM 519

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDA 402
             A   L  +++ G  P + TY ++ + 
Sbjct: 520 KNANMLLEAMLNLGVTPDDITYNILLEG 547



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 16/170 (9%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G ++   + T LI     +G V +A  T   M +   +PD   Y +VI+  C+ GN    
Sbjct: 428 GVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMG 487

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LL++M++ G +  P V TY +L++  CK G           ++  AN L   ML  G 
Sbjct: 488 FKLLKEMQINGHK--PGVITYNVLMNGLCKQG-----------QMKNANMLLEAMLNLGV 534

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
            PD + YN L++G CK  + E  L+L    N+KG I +   Y S +  Y+
Sbjct: 535 TPDDITYNILLEGHCKNGKAEDLLKL---RNEKGLIVDYAYYTSLVSEYN 581



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 49/208 (23%)

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E+  +  PP V  Y ILI+ +CK G            I +A  +F  +  +G  P  V++
Sbjct: 213 EILEYGFPPKVQYYNILINKFCKEG-----------SIRDAKLIFNEIRKRGLRPTTVSF 261

Query: 291 NCLIDGCCKT------YRIERALE-----------------------------LFDDMNK 315
           N LI+G CK+      +R+++ +E                             LFD+M +
Sbjct: 262 NTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQ 321

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRV 374
           +G  PN +T+ + I        ID A+    +M  L  GV P    Y  +++ LC+ G V
Sbjct: 322 RGLRPNGITFTALIDGQCRSRRIDSAMNTYHQM--LTMGVKPDLVMYNTLLNGLCKVGDV 379

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDA 402
            +AR  + E+   G  P + TY  + D 
Sbjct: 380 NKARKLVDEMRMVGMKPDKITYTTLIDG 407



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 18/171 (10%)

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           IW     +  +L  GF P V  YN LI+  CK   I  A  +F+++ K+G  P  V++N+
Sbjct: 207 IWT---FYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNT 263

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I        +D+   + + M+  N   P   +Y+ +IH LC+ GR+  A     E+   
Sbjct: 264 LINGLCKSRNLDEGFRLKKTMEE-NRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQR 322

Query: 388 GSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQV--MKVKP 436
           G  P   T+             +L+D   R R  D     + Q+  M VKP
Sbjct: 323 GLRPNGITFT------------ALIDGQCRSRRIDSAMNTYHQMLTMGVKP 361


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 125/263 (47%), Gaps = 29/263 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++ V+ + G    A+    +M++   + D   Y+++I+ LC+ G+ + A  L  +ME+ G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293

Query: 235 FRCPPDVYTYTILISSYCKYGMQTG----CRKAIRRRI--------------------WE 270
                ++ TY ILI  +C  G         R  I+R+I                     E
Sbjct: 294 I--TTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLRE 351

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L + M+ +G  PD + Y  LIDG CK   +++A ++ D M  KGC PN  T+N  I 
Sbjct: 352 AEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILIN 411

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            Y   N ID  +E+ RKM +L   V  + +Y  +I   CE G++  A++   E+V     
Sbjct: 412 GYCKANRIDDGLELFRKM-SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP 470

Query: 391 PREYTYKLVCDAL--NAAEEPSL 411
           P   TYK++ D L  N   E +L
Sbjct: 471 PNIVTYKILLDGLCDNGESEKAL 493



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/262 (32%), Positives = 120/262 (45%), Gaps = 28/262 (10%)

Query: 150 GLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           G WD     L+DM +R     V T SV  LI    +EG + EA      M      PD  
Sbjct: 312 GRWDDGAKLLRDMIKRKINPNVVTFSV--LIDSFVKEGKLREAEELHKEMIHRGIAPDTI 369

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            Y  +I+  C+  + +KA  +++ M   G  C P++ T+ ILI+ YCK            
Sbjct: 370 TYTSLIDGFCKENHLDKANQMVDLMVSKG--CDPNIRTFNILINGYCKA----------- 416

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            RI +   LFR M  +G V D V YN LI G C+  ++  A ELF +M  +   PN VTY
Sbjct: 417 NRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 476

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQ----NLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
              +       E +KA+E+  K++     L+ G+     Y  IIH +C A +V +A D  
Sbjct: 477 KILLDGLCDNGESEKALEIFEKIEKSKMELDIGI-----YNIIIHGMCNASKVDDAWDLF 531

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
             L   G  P   TY ++   L
Sbjct: 532 CSLPLKGVKPGVKTYNIMIGGL 553



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 118/269 (43%), Gaps = 43/269 (15%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++A+  F  M   R  P V  ++ + +A+ +   ++    L +QMEL G     ++YT +
Sbjct: 70  DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGI--AHNLYTLS 127

Query: 246 ILISSYCKYGMQTGCRK------------------------------AIRRRIWEANHLF 275
           I+I+ +C+      CRK                               +  R+ EA  L 
Sbjct: 128 IMINCFCR------CRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 181

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             M+  G  PD++  N L++G C + +   A+ L D M + GC PN VTY   +      
Sbjct: 182 DRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKS 241

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
            +   A+E++RKM+  N  +  +  Y+ II  LC+ G +  A +   E+   G      T
Sbjct: 242 GQTALAMELLRKMEERNIKLD-AVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIIT 300

Query: 396 YKLV----CDALNAAEEPSLLDDGLRKRI 420
           Y ++    C+A    +   LL D ++++I
Sbjct: 301 YNILIGGFCNAGRWDDGAKLLRDMIKRKI 329



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 15/218 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + + N +    +  + MS RG   +  T +   LI+   E G +N A   F  M   +  
Sbjct: 413 YCKANRIDDGLELFRKMSLRG--VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP 470

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  Y ++++ LC  G   KA  + E++E    +   D+  Y I+I   C         
Sbjct: 471 PNIVTYKILLDGLCDNGESEKALEIFEKIEKS--KMELDIGIYNIIIHGMCNAS------ 522

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ +A  LF  +  KG  P V  YN +I G CK   +  A  LF  M + G  P+
Sbjct: 523 -----KVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             TYN  IR +    +  K+++++ +++     V  S+
Sbjct: 578 GWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDAST 615


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 135/288 (46%), Gaps = 16/288 (5%)

Query: 116 TEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCL 175
            E  H   R    + N  T   +   + +  N K      +DM   G G +    +   L
Sbjct: 236 AESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDM--LGEGLVPDVVTFGIL 293

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           I  L + G +  A   F  M +F   P++  YN +I+A C+VG+ ++A  L   +EL  F
Sbjct: 294 IDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALF--LELERF 351

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
              PDV+TY+ILI   C              R  EA ++F  M  +G + + V YN LID
Sbjct: 352 EVSPDVFTYSILIRGLCSVS-----------RTEEAGNIFEKMTKEGILANSVTYNSLID 400

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           GCCK  ++++ALE+   M + G  PN +T+++ I  Y  +  +  A+ +  +M  +    
Sbjct: 401 GCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMV-IKSLS 459

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           P   +YT +I   C+ G + EA    ++++D G  P  YT   + D L
Sbjct: 460 PDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGL 507



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 113/267 (42%), Gaps = 56/267 (20%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G V+EA+A F  +++F   PDV+ Y+++I  LC V    +A  + E+M   G
Sbjct: 328 LIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEG 387

Query: 235 FRC---------------------------------PPDVYTYTILISSYCKYGMQTGCR 261
                                                P+V T++ LI  YCK        
Sbjct: 388 ILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKI------- 440

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               R +  A  ++  M+ K   PDVV Y  +IDG CK   ++ AL+L+ DM   G  PN
Sbjct: 441 ----RNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPN 496

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMM-RKMQ------NLNHGVPTSS-----SYTPIIHALC 369
             T +  +       +I  A+E+   K++      N++ G    S     +YT +IH LC
Sbjct: 497 CYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLC 556

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTY 396
           + G+  +A    +++   G  P E  Y
Sbjct: 557 QDGQFSKAVKLFSDMRRYGLQPDEVIY 583



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 109/261 (41%), Gaps = 14/261 (5%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  +T  +   L+ VL + G        +  M      P V  +  +I+  CR G+  +A
Sbjct: 142 GAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRA 201

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           + + ++M + G    P V  YTILI   C              +I EA  + R M   G 
Sbjct: 202 QEMFDEMRVKGI--VPTVIVYTILIRGLCS-----------DNKIEEAESMHRAMREVGV 248

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+V  YN L+DG CK    ++AL L+ DM  +G +P+ VT+   I       E+  A  
Sbjct: 249 YPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARN 308

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +   M   +   P  + Y  +I A C+ G V EA     EL      P  +TY ++   L
Sbjct: 309 LFVNMIKFSV-TPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGL 367

Query: 404 NAAEEPSLLDDGLRKRIRDGI 424
            +        +   K  ++GI
Sbjct: 368 CSVSRTEEAGNIFEKMTKEGI 388



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 21/217 (9%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A +   R+K  +  P+VY   +++  LC++    +A  +  ++         +V  Y ++
Sbjct: 101 AFSELSRLKSSKFTPNVYGELIIV--LCKMELVEEALSMYHKVGAALTIQACNVLLYVLV 158

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
                    +TG R  +  RI+E       M+  G  P V+ +  LIDGCC+   + RA 
Sbjct: 159 ---------KTG-RFELLWRIYEE------MISNGLSPSVITFGTLIDGCCRQGDLLRAQ 202

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
           E+FD+M  KG +P  + Y   IR     N+I++A  M R M+ +  GV P   +Y  ++ 
Sbjct: 203 EMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREV--GVYPNVYTYNTLMD 260

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             C+     +A     +++  G VP   T+ ++ D L
Sbjct: 261 GYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGL 297



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 15/99 (15%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF---RCRPDV----------YAYNV 209
           NG      +++CL+  L ++G +++AL  F    +F   RC  D            AY  
Sbjct: 491 NGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTA 550

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           +I+ LC+ G F+KA  L   M   G +  PD   Y +++
Sbjct: 551 LIHGLCQDGQFSKAVKLFSDMRRYGLQ--PDEVIYVVML 587


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 58/311 (18%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
           +D +K +     G+ V  +S     L+ VL ++  V+EA+  F      +  PD + +N+
Sbjct: 124 FDMVKKLLAEVQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNI 183

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCR--KAIRR 266
           +I  LCRVG  ++A  + + ME   F C PDV TY  LI+  CK   +Q GC   K I+ 
Sbjct: 184 LIRGLCRVGGVDRAFEVFKDME--SFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQS 241

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           R                 PD+V Y  +I G CK+ +++ A  LF++M + G  PN +T+N
Sbjct: 242 R-------------SDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFN 288

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQ----------------------NLNHGV--------- 355
             I  +  +  I +A  M RKM                        +NHG+         
Sbjct: 289 VLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTR 348

Query: 356 ---PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEE 408
              PT  +Y  +I+ALC+  R+ EARDFL ++ +   +P+ + Y  V    C A N  E 
Sbjct: 349 NVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEG 408

Query: 409 PSLLDDGLRKR 419
             +L +   KR
Sbjct: 409 NVILKEMEEKR 419



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 116/255 (45%), Gaps = 26/255 (10%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI+ L   G V+ A   F  M+ F C PDV  YN +IN LC+     +   L +
Sbjct: 178 TWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFK 237

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAIRR---------- 266
           +++     C PD+ TYT +IS +CK G            M++G +  +            
Sbjct: 238 EIQSRS-DCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGK 296

Query: 267 --RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              I EA  ++R M +     DVV +  LIDG C+  ++   L+ ++ M  +   P   T
Sbjct: 297 IGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYT 356

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y   I      N +++A + + +++N +  +P    Y P+I   C+AG V E    L E+
Sbjct: 357 YAVLINALCKENRLNEARDFLGQIKN-SSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEM 415

Query: 385 VDGGSVPREYTYKLV 399
            +    P + T+ ++
Sbjct: 416 EEKRCDPDKVTFTIL 430



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 125/275 (45%), Gaps = 18/275 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V  R NN K  + FL + SR         S+   L++ L + G  +     F  M     
Sbjct: 46  VIKRFNNPKVGFKFL-EFSRLNLNVNHCYSTYNLLMRSLCQMGHHDLVNIVFDYMGSDGH 104

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD      ++  + +  +F+  + LL   E+ G     + + Y  L+S   K       
Sbjct: 105 LPDSKLLGFLVTWMAQASDFDMVKKLLA--EVQGKEVRINSFVYNNLLSVLVK------- 155

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
               + ++ EA +LF+  L     PD   +N LI G C+   ++RA E+F DM   GC+P
Sbjct: 156 ----QNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLP 211

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + VTYN+ I      NE+ +  E+ +++Q+ +   P   +YT II   C++G++ EA + 
Sbjct: 212 DVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNL 271

Query: 381 LAELVDGGSVPREYTYKLVCDAL----NAAEEPSL 411
             E++  G  P   T+ ++ D      N AE  ++
Sbjct: 272 FEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAM 306



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 16/236 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   +K   +  ++M R G    V T +V  LI   G+ G + EA A + +M  F C 
Sbjct: 259 FCKSGKMKEASNLFEEMMRSGIQPNVITFNV--LIDGFGKIGNIAEAEAMYRKMAYFDCS 316

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            DV  +  +I+  CR G  N        M+       P VYTY +LI++ CK        
Sbjct: 317 ADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTR--NVSPTVYTYAVLINALCK-------- 366

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ EA      +     +P    YN +IDG CK   ++    +  +M +K C P+
Sbjct: 367 ---ENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPD 423

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
           +VT+   I  + V   + +AI +  +M       P + +   +I  L +AG   EA
Sbjct: 424 KVTFTILIIGHCVKGRMFEAINIFNRML-ATRCAPDNITVNSLISCLLKAGMPNEA 478


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 117/232 (50%), Gaps = 15/232 (6%)

Query: 168 TTSSVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           + +S+  LIK L +  G ++ AL  F  M    C PD Y Y  +IN LCR+G   +A+ L
Sbjct: 154 SVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKEL 213

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
            ++ME     C P V TYT LI   C+         AIR        L   M  KG  P+
Sbjct: 214 FKEMETKA--CSPTVVTYTSLIHGLCQ---SKDLDSAIR--------LLEEMASKGIKPN 260

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           V  Y+ L+DG CK+    RALEL D M  +  +PN +TY++ +       ++ +A+E++ 
Sbjct: 261 VFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILD 320

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           +M+ L    P +  Y  II   C+  +  EA +FL E+V GG  P   T+ L
Sbjct: 321 RMK-LQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSL 371



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 15/218 (6%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           +A+  F +MK++ C P   +Y  V   L        A      M   G   PP V +  +
Sbjct: 103 DAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGI--PPSVASLNV 160

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI + CK    +G   A  R       +FR M  +G  PD   Y  LI+G C+  +I  A
Sbjct: 161 LIKALCK---NSGTMDAALR-------IFREMPNRGCPPDSYTYGTLINGLCRLGKIGEA 210

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
            ELF +M  K C P  VTY S I       ++D AI ++ +M   + G+ P   +Y+ ++
Sbjct: 211 KELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMA--SKGIKPNVFTYSSLM 268

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              C++G    A + L  +V    +P   TY  +   L
Sbjct: 269 DGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGL 306



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 10/172 (5%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           +SRR    ++T S+   L+  L +EG + EA+    RMK    RPD   Y  +I+  C +
Sbjct: 288 VSRRHLPNMITYST---LVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDI 344

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
             F++A   L++M L G    P+  T+++ +  +    +Q  C +   R    A  L+  
Sbjct: 345 CKFHEAANFLDEMVLGGI--SPNRLTWSLHVRIH-NIVVQGLCTEHPNR----AFQLYLS 397

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           M  +G   D   ++ L++  C    + +A  L D+M   GCIP+ VT+N+ +
Sbjct: 398 MRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEVTWNAVV 449


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 13/227 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L ++GLV+EA      M +     DVY+YN +I+  C VG F  A  LL++M + G
Sbjct: 216 VIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRG 275

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PDVYT+ ILI   CK G           R+ EA ++  +M+ +G+ PD+V+YN L+
Sbjct: 276 -KVYPDVYTFNILIDGLCKLG-----------RVSEAYNVVAVMIKRGWKPDIVSYNALM 323

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G C +  +  A ++FD M ++  +PN ++Y + I  Y  V  +D+A+ ++ +M N N  
Sbjct: 324 NGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNL- 382

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           VP + +Y  ++  L ++GR L   D +  +   G      TY ++ D
Sbjct: 383 VPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLD 429



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-ELP 233
           LI  L + G V+EA      M +   +PD+ +YN ++N  C  G+  +A+ + ++M E  
Sbjct: 287 LIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERT 346

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
                P+V +Y  LI+ YCK            R + EA  L   M  K  VPD V YNCL
Sbjct: 347 AL---PNVISYCTLINGYCKV-----------RMVDEAMVLLTEMHNKNLVPDTVTYNCL 392

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +DG  K+ R     +L + M   G   + +TYN  +  Y    + DKA+ + + +  +  
Sbjct: 393 LDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGI 452

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P   +Y  ++  LC++GR+  A++    L   G  P   TY ++   L
Sbjct: 453 S-PNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGL 501



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 14/185 (7%)

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           +V+EA+     M      PD   YN +++ L + G       L+E M   G   P D+ T
Sbjct: 366 MVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASG--QPADLIT 423

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           Y +L+  Y K+            +  +A  LF+ ++  G  P++  YN L+DG CK+ R+
Sbjct: 424 YNVLLDDYFKH-----------EKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRL 472

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           + A E+F  ++ KGC PN  TYN  I        +D+A  ++ KM N N+ +P   ++  
Sbjct: 473 KYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNY-LPNYITFDT 531

Query: 364 IIHAL 368
           I+ A+
Sbjct: 532 IVRAI 536



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 19/220 (8%)

Query: 188 ALATFYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           A+ + Y + Q +   +P +  ++++INA  ++G    A  LL  +   GF+   DV   T
Sbjct: 87  AVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQI--DVRILT 144

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            L+   C           ++ R+ EA  L    + +GF  D V Y  +I+G CK  +   
Sbjct: 145 TLMKGLC-----------LKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRD 193

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPI 364
           A+++F  M K    PN + YN+ I        +D+A  +  +M  + +G+     SY  +
Sbjct: 194 AIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEM--VENGIELDVYSYNSM 251

Query: 365 IHALCEAGRVLEARDFLAELVDGGSV-PREYTYKLVCDAL 403
           IH  C  GR   A   L E+V  G V P  YT+ ++ D L
Sbjct: 252 IHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGL 291



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 99/232 (42%), Gaps = 16/232 (6%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
            L+T S +      LG+ G     L    +M     + DV     ++  LC  G   +A 
Sbjct: 104 SLITFSILINAFAQLGQMGFAFSLLGNILKMG---FQIDVRILTTLMKGLCLKGRVLEAV 160

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            LL +    GFR   D   Y  +I+  CK G           +  +A  +F  M      
Sbjct: 161 SLLHEYVDRGFRF--DEVCYGTIINGLCKIG-----------KTRDAIQMFPKMKKIRVY 207

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+++ YN +IDG CK   ++ A  L  +M + G   +  +YNS I  +  V     A+++
Sbjct: 208 PNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKL 267

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           + +M       P   ++  +I  LC+ GRV EA + +A ++  G  P   +Y
Sbjct: 268 LDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSY 319


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 138/305 (45%), Gaps = 31/305 (10%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           RG   +     L+D+  RG    +   +   ++  + ++G V+EAL     +  F C PD
Sbjct: 206 RGGGFRSAVRVLEDLHARGCA--LDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPD 263

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------- 256
           V +YN V+  LC    +   + L+E+M      CPP++ T+  LIS  C+ G+       
Sbjct: 264 VVSYNAVLKGLCMAKRWGCVQELMEEMVR--MACPPNIVTFNTLISYLCRNGLFERVHEV 321

Query: 257 -----QTGCRKAIRR------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
                + GC   IR              +  A+ +   M   G  P+VV YN L+ G C 
Sbjct: 322 LAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCS 381

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTS 358
             R E   EL  +M  K C  + VT+N  + ++     +D+ IE++ +M  L HG +P  
Sbjct: 382 AERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM--LEHGCMPDV 439

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRK 418
            +YT +I+  C+ G + EA   L  +   G  P   +Y +V   L +AE     +D + +
Sbjct: 440 ITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQ 499

Query: 419 RIRDG 423
            I+ G
Sbjct: 500 MIQQG 504



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 124/258 (48%), Gaps = 16/258 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V  + + L+ M   G    V T   T +I    +EGL++EA+     M    C+
Sbjct: 414 FCQNGLVDRVIELLEQMLEHGCMPDVIT--YTTVINGFCKEGLIDEAVMLLKSMTACGCK 471

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+  +Y +V+  LC    +  A  L+ QM   G  CP +  T+  LI+  CK G+     
Sbjct: 472 PNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG--CPLNPITFNTLINFLCKKGL----- 524

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + +A  L + ML  G  PD+++Y+ +IDG  K  + + ALEL + M  KG  PN
Sbjct: 525 ------VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 578

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            + Y+S     S    I+K I+M   +Q+       +  Y  +I +LC+ G    A +FL
Sbjct: 579 TIIYSSIASALSREGRINKVIQMFDNIQDTTIR-SDAVLYNAVISSLCKRGETERAIEFL 637

Query: 382 AELVDGGSVPREYTYKLV 399
           A +V  G VP E TY ++
Sbjct: 638 AYMVSSGCVPNESTYTIL 655



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 14/205 (6%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C  D   +N++++  C+ G  ++   LLEQM   G  C PDV TYT +I+ +CK G+   
Sbjct: 400 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHG--CMPDVITYTTVINGFCKEGL--- 454

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   I EA  L + M   G  P+ ++Y  ++ G C   R   A +L   M ++GC 
Sbjct: 455 --------IDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCP 506

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
            N +T+N+ I +      +++AIE++++M  +N   P   SY+ +I  L +AG+  EA +
Sbjct: 507 LNPITFNTLINFLCKKGLVEQAIELLKQML-VNGCSPDLISYSTVIDGLGKAGKTDEALE 565

Query: 380 FLAELVDGGSVPREYTYKLVCDALN 404
            L  +V+ G  P    Y  +  AL+
Sbjct: 566 LLNVMVNKGMSPNTIIYSSIASALS 590



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 16/234 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++ L   G + +ALA    M +  C P    Y+V++ A CR G F  A  +LE +   G
Sbjct: 165 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 224

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  DV    +++++ C  G            + EA HL R +   G  PDVV+YN ++
Sbjct: 225 --CALDVGNCNLVLNAICDQG-----------SVDEALHLLRDLPSFGCEPDVVSYNAVL 271

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   R     EL ++M +  C PN VT+N+ I Y       ++  E++ +M  + HG
Sbjct: 272 KGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQM--VEHG 329

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
             P    Y  II  +C+ G +  A + L  +   G  P    Y  +   L +AE
Sbjct: 330 CTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAE 383



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 13/174 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L ++GLV +A+    +M    C PD+ +Y+ VI+ L + G  ++A  LL  M   G
Sbjct: 515 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKG 574

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+   Y+ + S+  + G           RI +   +F  +       D V YN +I
Sbjct: 575 MS--PNTIIYSSIASALSREG-----------RINKVIQMFDNIQDTTIRSDAVLYNAVI 621

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
              CK    ERA+E    M   GC+PN  TY   IR  +    + +A EM+ ++
Sbjct: 622 SSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTEL 675



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 15/178 (8%)

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           Y  +++ YC+ G     R              RL       P+   Y  ++   C   RI
Sbjct: 130 YNAMVAGYCRAGQLESAR--------------RLAAAVPVPPNAYTYFPVVRALCARGRI 175

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
             AL + D+M ++GC P    Y+  +           A+ ++  +      +   +    
Sbjct: 176 ADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNL- 234

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
           +++A+C+ G V EA   L +L   G  P   +Y  V   L  A+    + + + + +R
Sbjct: 235 VLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 292


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 16/226 (7%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L + G V  AL     M Q    PDV+ YN+V+N LC+ G   +A+ +L QM   G  C 
Sbjct: 300 LCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERG--CL 357

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD+ T+  LI + C              R+ EA  L R +  KG  PDV  +N LI+  C
Sbjct: 358 PDITTFNTLIVALCS-----------GNRLEEALDLARQVTLKGLSPDVYTFNILINALC 406

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K    + AL LF++M   GC P+ VTYN+ I     + ++ KA++++++M+  + G P S
Sbjct: 407 KVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEME--SAGCPRS 464

Query: 359 S-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + +Y  II  LC+  R+ EA +   ++   G      T+  + D L
Sbjct: 465 TVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 510



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 122/257 (47%), Gaps = 18/257 (7%)

Query: 140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           +    GN ++   D  + ++ +G    V T ++  LI  L + G    AL  F  MK   
Sbjct: 368 VALCSGNRLEEALDLARQVTLKGLSPDVYTFNI--LINALCKVGDPQLALRLFEEMKSSG 425

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C PD   YN +I+ LC +G   KA  LL++ME  G  CP    TY  +I   CK      
Sbjct: 426 CTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAG--CPRSTVTYNTIIDGLCK------ 477

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                + RI EA  +F  M  +G   + + +N LIDG CK  RI+ A +L   M  +G  
Sbjct: 478 -----KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQ 532

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN +TYNS + +Y    +I KA ++++ M      V    +Y  +I+ LC+AGR   A  
Sbjct: 533 PNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDV-VTYGTLINGLCKAGRTQVALK 591

Query: 380 FLAELVDGG--SVPREY 394
            L  +   G  + P+ Y
Sbjct: 592 LLRGMRIKGMRATPKAY 608



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 15/223 (6%)

Query: 182 EGLVNEALATFY-RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           EG   + L T Y  M +   +PDV  +N ++ ALCR      A  +LE+M   G    PD
Sbjct: 162 EGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGV--APD 219

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
             T+T L+  + + G     + A+R +          ML  G  P  V  N LI+G CK 
Sbjct: 220 ETTFTTLMQGFVEEG---SIKAALRVKAR--------MLEMGCSPTKVTVNVLINGYCKL 268

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R+E AL         G  P+++TYN+F+        +  A+++M  M    H  P   +
Sbjct: 269 GRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHD-PDVFT 327

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           Y  +++ LC+ G++ EA+  L ++V+ G +P   T+  +  AL
Sbjct: 328 YNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVAL 370



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/122 (21%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G   D V YN L++   +  +++    ++ +M ++G  P+ VT+N+ ++     +++  A
Sbjct: 145 GIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTA 204

Query: 342 IEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           + M+ +M   + GV P  +++T ++    E G +  A    A +++ G  P + T  ++ 
Sbjct: 205 VLMLEEMS--SSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLI 262

Query: 401 DA 402
           + 
Sbjct: 263 NG 264


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 169/383 (44%), Gaps = 30/383 (7%)

Query: 16  QQVLPLM--LKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFR 73
           Q VL L+  L+N P    LA S+      + + S    +  I R    SP    R T F 
Sbjct: 75  QLVLHLLSHLQNHPHSLDLATSSLAICVLYRLPSPKPSINLIQRLIL-SPTCTNR-TIFD 132

Query: 74  HRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEM 133
                R R+  K    +  ++LV      + P       N+A E ++ ++    F  N  
Sbjct: 133 ELALARDRVDAKTT--LIFDLLVRAYCELKKP-------NEALECFYLIKEK-GFVPNIE 182

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           TC +M  +F + N  +  W    +M R      + T ++  +I VL +EG + +A     
Sbjct: 183 TCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNI--MINVLCKEGKLKKAKEFIG 240

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            M+    +P+V  YN +I+  C  G F +AR + + M+  G    PD YTY   IS  CK
Sbjct: 241 HMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLE--PDCYTYNSFISGLCK 298

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           R+ EA+ L   ML  G VP+ V YN LIDG C    +++A    D+M
Sbjct: 299 EG-----------RLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEM 347

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
             KG + + VTYN FI    +   +  A  M+++M+     +P + ++  +I+  C  G 
Sbjct: 348 ISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGM-MPDAVTHNILINGYCRCGD 406

Query: 374 VLEARDFLAELVDGGSVPREYTY 396
              A   L E+V  G  P   TY
Sbjct: 407 AKRAFGLLDEMVGKGIQPTLVTY 429



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 116/239 (48%), Gaps = 20/239 (8%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A   +  M +   R  +Y +N++IN LC+ G   KA+  +  ME  G +  P+V TY  +
Sbjct: 200 AWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVK--PNVVTYNTI 257

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I  +C           +R +   A  +F+ M  KG  PD   YN  I G CK  R+E A 
Sbjct: 258 IHGHC-----------LRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEAS 306

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIH 366
            L   M + G +PN VTYN+ I  Y    ++DKA     +M  ++ G+  S  +Y   IH
Sbjct: 307 GLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEM--ISKGIMASLVTYNLFIH 364

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIR 421
           AL   GR+ +A + + E+ + G +P   T+ ++    C   +A     LLD+ + K I+
Sbjct: 365 ALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQ 423



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 128/262 (48%), Gaps = 16/262 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + +  +    I  L  EG + +A      M++    PD   +N++IN  CR G+  +A
Sbjct: 351 GIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRA 410

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LL++M   G +  P + TYT LI    K           R R+ EA+ LF  +  +G 
Sbjct: 411 FGLLDEMVGKGIQ--PTLVTYTSLIYVLGK-----------RNRMKEADALFSKIQQEGL 457

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           +PD++ +N LIDG C    I+RA +L  +M+    +P+ +TYN+ ++ Y    ++++A +
Sbjct: 458 LPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQ 517

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           ++ +M+    G+ P   SY  +I    + G + +A     E++  G  P   TY  +   
Sbjct: 518 LLDEMK--RRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQG 575

Query: 403 LNAAEEPSLLDDGLRKRIRDGI 424
           L   +E    ++ L++ +  GI
Sbjct: 576 LCKNQEGEHAEELLKEMVSKGI 597



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 28/222 (12%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + R  + K  +  L +M   G G   T  + T LI VLG+   + EA A F +++Q    
Sbjct: 401 YCRCGDAKRAFGLLDEMV--GKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLL 458

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  +N +I+  C  GN ++A  LL++M+    +  PD  TY  L+  YC+ G     R
Sbjct: 459 PDIIVFNALIDGHCANGNIDRAFQLLKEMD--NMKVLPDEITYNTLMQGYCREGKVEEAR 516

Query: 262 K---AIRRRIWEANHL------------------FRL---MLFKGFVPDVVAYNCLIDGC 297
           +    ++RR  + +H+                  FR+   M+  GF P ++ YN LI G 
Sbjct: 517 QLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGL 576

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
           CK    E A EL  +M  KG  P+  TY S I     V++++
Sbjct: 577 CKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVDDLE 618


>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
 gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Cucumis sativus]
          Length = 501

 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 128/259 (49%), Gaps = 17/259 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE-EGLVNEALATFYRMKQFR 199
           +    N +K  + F +DM + G    VT  S+  LIK   +  G +++A+  F  M    
Sbjct: 158 ILVEENQLKSAFRFYRDMRKMGIPPTVT--SLNVLIKAFCKNSGTMDKAMHLFRTMSNHG 215

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C PD Y Y  +IN LCR  +  +A+ LL++ME  G  C P V TYT +I   C+      
Sbjct: 216 CEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKG--CSPSVVTYTSIIHGLCQLN---- 269

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   + EA  L   M  K   P+V  Y+ L+DG CKT    RA ++ + M +K   
Sbjct: 270 -------NVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLR 322

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN ++Y++ +       +I++A+E+  +M+ L    P +  Y  I++ LC+  R  EA +
Sbjct: 323 PNMISYSTLLNGLCNEGKINEALEIFDRMK-LQGFKPDAGLYGKIVNCLCDVSRFQEAAN 381

Query: 380 FLAELVDGGSVPREYTYKL 398
           FL E+V  G  P   T+ L
Sbjct: 382 FLDEMVLCGIKPNRITWSL 400



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 113/252 (44%), Gaps = 19/252 (7%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR-VGNFNKARFL 226
           T  S   ++ +L EE  +  A   +  M++    P V + NV+I A C+  G  +KA  L
Sbjct: 148 TEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHL 207

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
              M   G  C PD YTY  LI+  C++           R I EA  L + M  KG  P 
Sbjct: 208 FRTMSNHG--CEPDSYTYGTLINGLCRF-----------RSIVEAKELLQEMETKGCSPS 254

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           VV Y  +I G C+   ++ A+ L +DM  K   PN  TY+S +  +       +A +++ 
Sbjct: 255 VVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILE 314

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY-KLV---CDA 402
            M       P   SY+ +++ LC  G++ EA +    +   G  P    Y K+V   CD 
Sbjct: 315 LMIQ-KRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDV 373

Query: 403 LNAAEEPSLLDD 414
               E  + LD+
Sbjct: 374 SRFQEAANFLDE 385



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 13/217 (5%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           +++  F++M+ F C+P   +Y  V+  L        A      M   G   PP V +  +
Sbjct: 132 DSIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGI--PPTVTSLNV 189

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI ++CK    +G        + +A HLFR M   G  PD   Y  LI+G C+   I  A
Sbjct: 190 LIKAFCK---NSG-------TMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEA 239

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
            EL  +M  KGC P+ VTY S I     +N +D+A+ ++  M++ N   P   +Y+ ++ 
Sbjct: 240 KELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIE-PNVFTYSSLMD 298

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             C+ G    ARD L  ++     P   +Y  + + L
Sbjct: 299 GFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGL 335



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 19/184 (10%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S + L+  L  EG +NEAL  F RMK    +PD   Y  ++N LC V  F +A   L++M
Sbjct: 327 SYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEM 386

Query: 231 ELPGFRCPPDVYTYTILISSYCK--YGMQTGCRKAIRRRIWEANHLFRL---MLFKGFVP 285
            L G +  P+  T+++ + ++ +  +G+ T         I  +N  F+L   +L +G   
Sbjct: 387 VLCGIK--PNRITWSLHVRTHNRVIHGLCT---------INNSNRAFQLYLSVLTRGISI 435

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
            V  +N L+   C    + +   + D+M   GCIP    +++ +  +    +  KA + M
Sbjct: 436 TVDTFNSLLKCFCNKKDLPKTSRILDEMVINGCIPQGEMWSTMVNCFC---DERKACDAM 492

Query: 346 RKMQ 349
           + +Q
Sbjct: 493 KLLQ 496


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 160/348 (45%), Gaps = 68/348 (19%)

Query: 144 RGNNVKGLWDFLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           +  NV   +D   +M SRR +  +VT S++     ++G+   + +A+  F +M      P
Sbjct: 222 KDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGK---LKDAIGLFNKMTSENINP 278

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC--------KY 254
           DVY +N++++A C+ G   +A+  L  M   G +  PD+ TY  L+  YC        K 
Sbjct: 279 DVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIK--PDIVTYNSLMDGYCLVNEVNMAKS 336

Query: 255 GMQT----GCRKAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
            + T    G    +R            + + +A  LF+ M  K   P+V+ YN LIDG C
Sbjct: 337 ILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLC 396

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PT 357
           K+ RI  ALEL D M+ +G  P+ +TY+S +      + +DKAI ++ K++  + G+ P 
Sbjct: 397 KSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLK--DQGIRPN 454

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELV-------------------------------- 385
             +YT +I  LC+ GR+ +AR+   +L+                                
Sbjct: 455 MYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLS 514

Query: 386 ---DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQ 430
              D   +P   TY+++  +L   +E    +  LR+ I  G+ Y F +
Sbjct: 515 KMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLE 562



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 107/234 (45%), Gaps = 16/234 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L + G    AL    R+     + DV  Y+ +I+++C+  N N A  L  +M
Sbjct: 177 SYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEM 236

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                R   ++ TY+ LIS +C  G           ++ +A  LF  M  +   PDV  +
Sbjct: 237 --VSRRISSNIVTYSALISGFCIVG-----------KLKDAIGLFNKMTSENINPDVYTF 283

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L+D  CK  R++ A      M K+G  P+ VTYNS +  Y +VNE++ A  ++  M  
Sbjct: 284 NILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMS- 342

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            + GV  T  SY  +I+  C+   V +A     E+      P   TY  + D L
Sbjct: 343 -HRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGL 395



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 120/288 (41%), Gaps = 34/288 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + GL+  A +   ++ +    PD    N  I   C  G  ++A    +++   G
Sbjct: 111 LINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALG 170

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F    D  +Y  LI+  CK G      + +RR   +   L           DVV Y+ +I
Sbjct: 171 FHL--DQVSYGTLINGLCKVGETRAALELLRRVDGKLVQL-----------DVVMYSTII 217

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLN 352
           D  CK   +  A +L+ +M  +    N VTY++ I  + +V ++  AI +  KM  +N+N
Sbjct: 218 DSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENIN 277

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
              P   ++  ++ A C+ GRV EA++ LA ++  G  P   TY  + D      E ++ 
Sbjct: 278 ---PDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMA 334

Query: 413 DDGLRKRIRDGIEYRFR----------------QVMKVKPIMKHKELL 444
              L      G+    R                Q MK+   M HK++ 
Sbjct: 335 KSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIF 382



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 119/295 (40%), Gaps = 64/295 (21%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T ++   IK    +G +++AL    ++       D  +Y  +IN LC+VG    A  LL 
Sbjct: 140 TITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLR 199

Query: 229 QM---------------------------------ELPGFRCPPDVYTYTILISSYCKYG 255
           ++                                 E+   R   ++ TY+ LIS +C  G
Sbjct: 200 RVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVG 259

Query: 256 ---------------------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
                                      +   C++    R+ EA +   +M+ +G  PD+V
Sbjct: 260 KLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEG---RVKEAKNGLAMMMKQGIKPDIV 316

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN L+DG C    +  A  + + M+ +G      +YN  I  +  +  +D+A+++ ++M
Sbjct: 317 TYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEM 376

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +     P   +Y  +I  LC++GR+  A + +  + D G  P   TY  + DAL
Sbjct: 377 HH-KQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDAL 430



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 7/156 (4%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF+ M ++G  P+ V +N LI+  C+   I  A  +   + K G  P+ +T N+FI+ + 
Sbjct: 92  LFQKMEYRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFC 151

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           +  +I +A+    K+  L   +    SY  +I+ LC+ G    A + L   VDG  V  +
Sbjct: 152 LKGQIHQALNFHDKLVALGFHLD-QVSYGTLINGLCKVGETRAALELLRR-VDGKLVQLD 209

Query: 394 YT-YKLVCDAL----NAAEEPSLLDDGLRKRIRDGI 424
              Y  + D++    N  +   L  + + +RI   I
Sbjct: 210 VVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNI 245



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 38/219 (17%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +G  ++   +  +D+  +G    +T ++ T +I+     GL +EAL+   +MK   C 
Sbjct: 465 LCKGGRLEDARNIFEDLLVKGYN--LTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCI 522

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPG--------------FRCPPDVYTYTIL 247
           PD   Y ++I +L      +KA  LL +M   G              F   P  +     
Sbjct: 523 PDAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNND- 581

Query: 248 ISSYCKYGMQTG-CRKAIRRRIWEANHLFR------------LMLF-------KGFVPDV 287
            S  C    ++G   K +  RI+    L +            ++++       +G++ DV
Sbjct: 582 -SLQCTSSQESGNWAKLLLERIYCDCVLTKSNMRDKDVECPSVIIYSTCDWSKQGYILDV 640

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
             Y  +I G C     + +L L   M   GCIP+ VTY+
Sbjct: 641 NTYTVMIQGFCSHGLFDESLALLSKMEVNGCIPDAVTYD 679


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 136/287 (47%), Gaps = 23/287 (8%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           GN V+ L  F K M  +G   +    + + +I  L + G   EA+  F +  +    PDV
Sbjct: 605 GNTVEALSTF-KCMLEKG--LIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDV 661

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           + YN +I+  C+ G+  KA  L ++M   G    P++  Y  LI+  CK G         
Sbjct: 662 FLYNSLISGFCKEGDIEKASQLYDEMLHNGIN--PNIVVYNTLINGLCKLG--------- 710

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              + +A  LF  +  K  VPDVV Y+ +IDG CK+  +  A +LFD+M  KG  P+   
Sbjct: 711 --EVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYI 768

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y   I        ++KA+ +  + Q     V + S++  +I + C+ G+V+EAR+   ++
Sbjct: 769 YCILIDGCGKEGNLEKALSLFHEAQ--QKSVGSLSAFNSLIDSFCKHGKVIEARELFDDM 826

Query: 385 VDGGSVPREYTYKLVCDALNAAE-----EPSLLDDGLRKRIRDGIEY 426
           VD    P   TY ++ DA   AE     E   LD   R  I + + Y
Sbjct: 827 VDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTY 873



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 16/212 (7%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            MK  +  P  + Y+V+I+ LC   +  KA  +L+QM   G +  P+V+ Y  LI +Y +
Sbjct: 441 EMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVK--PNVFMYGTLIKAYVQ 498

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        R   A  L ++M+  G +PD+  YNCLI G C+  ++E A  L  DM
Sbjct: 499 -----------ESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDM 547

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAG 372
            +KG  PN  TY +FI  YS   EI  A    + M  L+ G VP +  YT +I   C+ G
Sbjct: 548 GEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDM--LSSGIVPNNVIYTILIKGHCDVG 605

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
             +EA      +++ G +P    Y  +  +L+
Sbjct: 606 NTVEALSTFKCMLEKGLIPDIRAYSAIIHSLS 637



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 17/209 (8%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M + +  PDVY Y  VI A C+VG+  K + +L +ME     C P+++TY   I   C  
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK---ECKPNLFTYNAFIGGLC-- 287

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
             QTG        + EA  + +LM+ KG  PD   Y  L+DG CK  R + A  +F+ M 
Sbjct: 288 --QTGA-------VDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMP 338

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGR 373
             G  PNR TY + I  +     I++A+ +  +M  +  G+  +  +Y  +I  + +AG 
Sbjct: 339 SSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEM--ITRGLKLNVVTYNAMIGGIAKAGE 396

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + +A     E++  G  P  +TY L+ D 
Sbjct: 397 MAKAMSLFNEMLMAGLEPDTWTYNLLIDG 425



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 111/265 (41%), Gaps = 27/265 (10%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
            NG L       CLI  L     V EA      M +   +P+ + Y   IN   + G   
Sbjct: 514 ANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQ 573

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAIRR--- 266
            A    + M   G    P+   YTILI  +C  G            ++ G    IR    
Sbjct: 574 VAERYFKDMLSSGI--VPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSA 631

Query: 267 ---------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    +  EA  +F   L  G VPDV  YN LI G CK   IE+A +L+D+M   G
Sbjct: 632 IIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNG 691

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             PN V YN+ I     + E+ KA E+  +++  +  VP   +Y+ II   C++G + EA
Sbjct: 692 INPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDL-VPDVVTYSTIIDGYCKSGNLTEA 750

Query: 378 RDFLAELVDGGSVPREYTYKLVCDA 402
                E++  G  P  Y Y ++ D 
Sbjct: 751 FKLFDEMISKGISPDGYIYCILIDG 775



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 113/254 (44%), Gaps = 18/254 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    +EG + EAL     M     + +V  YN +I  + + G   KA  L  +M +
Sbjct: 350 TALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLM 409

Query: 233 PGFRCPPDVYTYTILISSYCK-YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
            G    PD +TY +LI  Y K + M   C             L   M  +   P    Y+
Sbjct: 410 AGLE--PDTWTYNLLIDGYLKSHDMAKACE------------LLAEMKARKLTPSPFTYS 455

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            LI G C +  +++A E+ D M + G  PN   Y + I+ Y   +  + AIE+++ M  +
Sbjct: 456 VLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIM--I 513

Query: 352 NHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
            +GV P    Y  +I  LC A +V EA+  L ++ + G  P  +TY    +  + + E  
Sbjct: 514 ANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQ 573

Query: 411 LLDDGLRKRIRDGI 424
           + +   +  +  GI
Sbjct: 574 VAERYFKDMLSSGI 587



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 129/280 (46%), Gaps = 18/280 (6%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G+ +KG    L +M +     L T ++    I  L + G V+EAL     M +    PD 
Sbjct: 256 GDVIKGKM-VLSEMEKECKPNLFTYNA---FIGGLCQTGAVDEALEVKKLMMEKGLGPDG 311

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           + Y ++++  C+     +A+ + E M   G    P+ +TYT LI  + K G         
Sbjct: 312 HTYTLLVDGFCKQKRSKEAKLIFESMPSSGLN--PNRFTYTALIDGFIKEG--------- 360

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              I EA  +   M+ +G   +VV YN +I G  K   + +A+ LF++M   G  P+  T
Sbjct: 361 --NIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWT 418

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YN  I  Y   +++ KA E++ +M+      P+  +Y+ +I  LC +  + +A + L ++
Sbjct: 419 YNLLIDGYLKSHDMAKACELLAEMK-ARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQM 477

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           +  G  P  + Y  +  A        +  + L+  I +G+
Sbjct: 478 IRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGV 517



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 105/238 (44%), Gaps = 29/238 (12%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G V +A   F  +++    PDV  Y+ +I+  C+ GN  +A  L ++M   G
Sbjct: 702 LINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKG 761

Query: 235 FRCPPDVYTYTILISSYCKYG--------------MQTGCRKAIRR---------RIWEA 271
               PD Y Y ILI    K G                 G   A            ++ EA
Sbjct: 762 I--SPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEA 819

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             LF  M+ K   P++V Y  LID   K   +E A +LF DM  +  IPN +TY S +  
Sbjct: 820 RELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLS 879

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFL-AELVDG 387
           Y+ +    K I + + M+    G+   + +Y  +  A C+ G+ LEA   L   LV+G
Sbjct: 880 YNQIGNRFKMISLFKDME--ARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEG 935



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 16/194 (8%)

Query: 173  TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
            T LI   G+  ++ EA   F  M+     P+   Y  ++ +  ++GN  K   L + ME 
Sbjct: 839  TILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEA 898

Query: 233  PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
             G  C  D   Y ++ S+YCK G           +  EA  L    L +G   +   ++ 
Sbjct: 899  RGIAC--DAIAYGVMASAYCKEG-----------KSLEALKLLNKSLVEGIKLEDDVFDA 945

Query: 293  LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS-FIRYYSVVNEIDKAIEMMRKMQNL 351
            LI   CK  +I   LEL  +M K+    +  T N+  + +Y   NE D+A +++  MQ L
Sbjct: 946  LIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNE-DEASKVLGVMQRL 1004

Query: 352  NHGVPTSSSYTPII 365
               VPTS S T  I
Sbjct: 1005 GW-VPTSLSLTDSI 1017



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 124/289 (42%), Gaps = 31/289 (10%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFL---KDMSRRGNGELVTTSSVTCLIKVLGEEGL 184
           F H + T +E  ++  R +     W  L   +D  R+ N E+V +        VL +  +
Sbjct: 51  FDHYDDTVREFSMILKRKD-----WQILLNNEDNVRKLNPEIVCS--------VLQKSEI 97

Query: 185 VNEA-LATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
            +   L  F+     +     Y  +Y+++   LC  G  ++A  +LE+  L   R PP +
Sbjct: 98  DDSVRLQNFFYWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEK--LLQTRKPP-L 154

Query: 242 YTYTILISSYCKYGMQTGCRKAI---RRRIW----EANHLFRLMLFKGFVPDVVAYNCLI 294
                L+  Y ++G        I   + R+     EA+ +F   + +GF P ++  N L+
Sbjct: 155 EILDSLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLM 214

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
               K   +    +++  M +   +P+  TY + I+ +  V ++ K   ++ +M+     
Sbjct: 215 RDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEME--KEC 272

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P   +Y   I  LC+ G V EA +    +++ G  P  +TY L+ D  
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGF 321


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 14/227 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I    +EGL++EA+     M    CRP+  +Y +V+  LC    +  A  L+ QM  
Sbjct: 396 TTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQ 455

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  CPP+  T+  LI+  CK G+           + +A  L + ML  G  PD+++Y+ 
Sbjct: 456 QG--CPPNPVTFNTLINFLCKKGL-----------VEQAIELLKQMLVNGCSPDLISYST 502

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +IDG  K    + ALEL + M KKG  PN + Y+S     S    I+K I+M   +Q+  
Sbjct: 503 VIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTT 562

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
                +  Y  +I +LC+ G    A +FLA +V  G VP E TY ++
Sbjct: 563 V-RSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTIL 608



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 134/313 (42%), Gaps = 65/313 (20%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM-KQFRCRP 202
           R +  +G    L+D+  RG    +   +   +++ + ++G V+EA+     +   F C P
Sbjct: 158 RASGFRGAVGVLRDLHGRGCA--LDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEP 215

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------ 256
           DV +YN V+  LC    +   + L+E+M   G  CPP++ T++ LI   C+ G+      
Sbjct: 216 DVVSYNAVLRGLCMARRWGHVQDLMEEMVAAG--CPPNIVTFSTLIGHLCRNGLFERVHE 273

Query: 257 ------QTGCRKAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
                 + GC   +R             R+  A  +   M   G  P+VV YN L+ G C
Sbjct: 274 VHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLC 333

Query: 299 KTYR-----------------------------------IERALELFDDMNKKGCIPNRV 323
              R                                   ++R +E+ + M + GC+P+ +
Sbjct: 334 SADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVI 393

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           TY + I  +     ID+A+ ++R M       P + SYT ++  LC A R ++A + +++
Sbjct: 394 TYTTVINGFCKEGLIDEAVMLLRSMAACGC-RPNTVSYTIVLKGLCSAERWVDAEELMSQ 452

Query: 384 LVDGGSVPREYTY 396
           ++  G  P   T+
Sbjct: 453 MIQQGCPPNPVTF 465



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 126/274 (45%), Gaps = 30/274 (10%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC---LIKVLGEEGLVNEALAT 191
           CKE  +  ARG         L  M   G      + +V C   L+K L       EA   
Sbjct: 298 CKEERLEVARG--------ILNRMPSYG-----LSPNVVCYNTLLKGLCSADRWEEAEGL 344

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              M    C  D   +N++++ LC+ G  ++   +LEQM   G  C PDV TYT +I+ +
Sbjct: 345 LAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHG--CMPDVITYTTVINGF 402

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK G+           I EA  L R M   G  P+ V+Y  ++ G C   R   A EL  
Sbjct: 403 CKEGL-----------IDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMS 451

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
            M ++GC PN VT+N+ I +      +++AIE++++M  +N   P   SY+ +I  L +A
Sbjct: 452 QMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQML-VNGCSPDLISYSTVIDGLGKA 510

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           G   EA + L  +V  G  P    Y  +  AL+ 
Sbjct: 511 GNTDEALELLNVMVKKGMSPNTIIYSSIASALSG 544



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 102/235 (43%), Gaps = 17/235 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L++ L   G + +ALA    M +  C P    Y+V + A CR   F  A  +L   +L G
Sbjct: 117 LVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLR--DLHG 174

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPDVVAYNCL 293
             C  DV    +++ + C  G            + EA  L R +L   G  PDVV+YN +
Sbjct: 175 RGCALDVGNCNLVLQAVCDQG-----------PVDEAVRLLRDLLPSFGCEPDVVSYNAV 223

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           + G C   R     +L ++M   GC PN VT+++ I +       ++  E+  +M    H
Sbjct: 224 LRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMA--EH 281

Query: 354 G-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           G  P    Y  II  +C+  R+  AR  L  +   G  P    Y  +   L +A+
Sbjct: 282 GCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSAD 336



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 16/191 (8%)

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN ++   CR G    AR L   + +      P+ YTY  L+ + C  G           
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAASVPV-----APNAYTYFPLVRALCARG----------- 125

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           RI +A  +   M  +G  P    Y+  ++  C+      A+ +  D++ +GC  +    N
Sbjct: 126 RIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCN 185

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             ++       +D+A+ ++R +       P   SY  ++  LC A R    +D + E+V 
Sbjct: 186 LVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVA 245

Query: 387 GGSVPREYTYK 397
            G  P   T+ 
Sbjct: 246 AGCPPNIVTFS 256



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 2/140 (1%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+   Y  L+   C   RI  AL + DDM ++GC P    Y+  +      +    A+ +
Sbjct: 109 PNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGV 168

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG-GSVPREYTYKLVCDAL 403
           +R +      +   +    ++ A+C+ G V EA   L +L+   G  P   +Y  V   L
Sbjct: 169 LRDLHGRGCALDVGNCNL-VLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGL 227

Query: 404 NAAEEPSLLDDGLRKRIRDG 423
             A     + D + + +  G
Sbjct: 228 CMARRWGHVQDLMEEMVAAG 247


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 161/341 (47%), Gaps = 70/341 (20%)

Query: 152 WDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           +D   +M  +G + ++VT S++     +LG+   +N+A+  F +M     +PDVY +N++
Sbjct: 245 FDLFSEMISKGISPDVVTYSALISGFCILGK---LNDAIDLFNKMILENIKPDVYTFNIL 301

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC------------KYGMQT 258
           +NA C+ G   + + + + M   G +  P+  TY  L+  YC                Q 
Sbjct: 302 VNAFCKDGKMKEGKTVFDMMMKQGIK--PNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQG 359

Query: 259 GCRKAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           G    I+            ++  EA +LF+ M  K  +PDVV Y+ LIDG  K+ RI  A
Sbjct: 360 GVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYA 419

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
           L+L D M+ +G  P   TYNS +     ++++DKAI ++ K++  + G+ P   +Y+ +I
Sbjct: 420 LQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLK--DKGIQPNMYTYSILI 477

Query: 366 HALCEAGRVLEARD-----------------------------------FLAELVDGGSV 390
             LC++G++ +AR                                     L+++ D G +
Sbjct: 478 KGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCI 537

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQV 431
           P   TY+++  +L   +E  + +  LR+ I  G+  R RQ+
Sbjct: 538 PDAKTYEIIILSLFKKDENDMAEKLLREMIARGV--RPRQI 576



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 116/237 (48%), Gaps = 16/237 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L + G    AL    R+     +P+V  YN +I+++C+V   N+A  L  +M
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PDV TY+ LIS +C  G           ++ +A  LF  M+ +   PDV  +
Sbjct: 252 ISKGIS--PDVVTYSALISGFCILG-----------KLNDAIDLFNKMILENIKPDVYTF 298

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L++  CK  +++    +FD M K+G  PN VTYNS +  Y +V E++KA  +   M  
Sbjct: 299 NILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMA- 357

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
              GV P   SY+ +I+  C+  +  EA +   E+     +P   TY  + D L+ +
Sbjct: 358 -QGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKS 413



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 107/234 (45%), Gaps = 14/234 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + GL+  A + F ++ +    PD   +  +I  LC  G   +A    +++   G
Sbjct: 126 LINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALG 185

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F    D  +Y  LI   CK G        ++R   + N +          P+VV YN +I
Sbjct: 186 FHF--DQISYGTLIHGLCKVGETRAALDLLQR--VDGNLV---------QPNVVMYNTII 232

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK   +  A +LF +M  KG  P+ VTY++ I  + ++ +++ AI++  KM  L + 
Sbjct: 233 DSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMI-LENI 291

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            P   ++  +++A C+ G++ E +     ++  G  P   TY  + D     +E
Sbjct: 292 KPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKE 345



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 105/212 (49%), Gaps = 14/212 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A++ F R+ +    P  + +N ++ +L +  +++   +L ++ME  G +  P++   
Sbjct: 66  VDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIK--PNLVNC 123

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI+ +C+ G+           I  A  +F  +L  G+VPD + +  LI G C   +I+
Sbjct: 124 NILINCFCQLGL-----------IPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQ 172

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +A    D +   G   ++++Y + I     V E   A+++++++   N   P    Y  I
Sbjct: 173 QAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDG-NLVQPNVVMYNTI 231

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           I ++C+   V EA D  +E++  G  P   TY
Sbjct: 232 IDSMCKVKLVNEAFDLFSEMISKGISPDVVTY 263


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 123/258 (47%), Gaps = 16/258 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F R   V+    F K+M +RG    V   S +CLI +    G ++ A A    MK     
Sbjct: 272 FCRVGEVEEAMKFYKEMQQRGVTPDVV--SFSCLIGLFSTRGKMDHAAAYLREMKGLGLV 329

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   Y +VI   CR G+ ++A  L  + E+ G  C PDV TY  L++  CK        
Sbjct: 330 PDGVIYTMVIGGFCRAGSMSEA--LRVRDEMVGLGCLPDVVTYNTLLNGLCK-------- 379

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              + R+ +A  L   M  +G  PD+  +  LI G C+    E+AL+LFD +  +   P+
Sbjct: 380 ---QHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPD 436

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            V YNS I       ++ KA E+   M +     P   +Y+ +I + CE G+V EA  FL
Sbjct: 437 VVAYNSLIDGMCRKGDLAKANELWDDM-HAREIFPNHVTYSILIDSHCEKGQVEEAFGFL 495

Query: 382 AELVDGGSVPREYTYKLV 399
            E+V  G++P   TY  +
Sbjct: 496 DEMVSKGNLPNIMTYNSI 513



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 14/202 (6%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  +NV+I+A  R G+ + A  L++ M   G +  P + T+  ++   CK+       
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLK--PGIVTFNSVLKGLCKH------- 240

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               RR  +A  +FR M      PDV ++N LI G C+   +E A++ + +M ++G  P+
Sbjct: 241 ----RRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPD 296

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            V+++  I  +S   ++D A   +R+M+ L   VP    YT +I   C AG + EA    
Sbjct: 297 VVSFSCLIGLFSTRGKMDHAAAYLREMKGLGL-VPDGVIYTMVIGGFCRAGSMSEALRVR 355

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+V  G +P   TY  + + L
Sbjct: 356 DEMVGLGCLPDVVTYNTLLNGL 377



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 124/277 (44%), Gaps = 24/277 (8%)

Query: 144 RGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           R  +V      +  M+ +G    +VT +SV   +K L +    ++A   F  M Q    P
Sbjct: 204 RAGDVDAAIALVDSMANKGLKPGIVTFNSV---LKGLCKHRRFDKAKEVFRAMDQCSVAP 260

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           DV ++N++I   CRVG   +A    ++M+  G    PDV +++ LI  +           
Sbjct: 261 DVRSFNILIGGFCRVGEVEEAMKFYKEMQQRG--VTPDVVSFSCLIGLF----------- 307

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
           + R ++  A    R M   G VPD V Y  +I G C+   +  AL + D+M   GC+P+ 
Sbjct: 308 STRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDV 367

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           VTYN+ +      + +  A E++ +M+    GV P   ++T +IH  C  G   +A    
Sbjct: 368 VTYNTLLNGLCKQHRLLDAEELLNEMK--ERGVTPDLCTFTTLIHGYCRDGNFEKALQLF 425

Query: 382 AELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDD 414
             L+     P    Y  + D +    + A+   L DD
Sbjct: 426 DTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDD 462



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 125/273 (45%), Gaps = 24/273 (8%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           + +M +R     V T +V  LI      G V+ A+A    M     +P +  +N V+  L
Sbjct: 180 ISEMEKRCVFPDVVTHNV--LIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGL 237

Query: 215 CRVGNFNKARFLLEQMELPGFRC--PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           C+   F+KA+ +   M+    +C   PDV ++ ILI  +C+ G            + EA 
Sbjct: 238 CKHRRFDKAKEVFRAMD----QCSVAPDVRSFNILIGGFCRVG-----------EVEEAM 282

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
             ++ M  +G  PDVV+++CLI       +++ A     +M   G +P+ V Y   I  +
Sbjct: 283 KFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGF 342

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
                + +A+ +  +M  L   +P   +Y  +++ LC+  R+L+A + L E+ + G  P 
Sbjct: 343 CRAGSMSEALRVRDEMVGLG-CLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPD 401

Query: 393 EYTYKLV----CDALNAAEEPSLLDDGLRKRIR 421
             T+  +    C   N  +   L D  L +R+R
Sbjct: 402 LCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLR 434



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 115/269 (42%), Gaps = 37/269 (13%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L +M  RG    + T   T LI     +G   +AL  F  +   R RPDV AYN +I+
Sbjct: 388 ELLNEMKERGVTPDLCT--FTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLID 445

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----------------- 255
            +CR G+  KA  L + M        P+  TY+ILI S+C+ G                 
Sbjct: 446 GMCRKGDLAKANELWDDMH--AREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGN 503

Query: 256 ----------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
                     ++  CR      + +     + M+    +PD++ +N LI G  K   +  
Sbjct: 504 LPNIMTYNSIIKGYCRSG---NVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHG 560

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPI 364
           A  +F+ M K+   P+ VTYN  I  +S    +++A  + +KM     G+ P   +Y  +
Sbjct: 561 AFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMG--ASGIEPDRYTYMSL 618

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPRE 393
           I+    AG   EA     E++  G  P +
Sbjct: 619 INGHVTAGNSKEAFQLHDEMMHRGFAPDD 647



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 16/210 (7%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           L KA E +  +    + F N +T   +         V+  + FL +M  +GN  L    +
Sbjct: 453 LAKANELWDDMHAR-EIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGN--LPNIMT 509

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              +IK     G V +      +M Q    PD+  +N +I+   +  N + A  +   ME
Sbjct: 510 YNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIME 569

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
               +  PD  TY ++I+ + + G            + EA  +F+ M   G  PD   Y 
Sbjct: 570 KEMVQ--PDAVTYNMIINGFSEQG-----------NMEEAGRVFKKMGASGIEPDRYTYM 616

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPN 321
            LI+G       + A +L D+M  +G  P+
Sbjct: 617 SLINGHVTAGNSKEAFQLHDEMMHRGFAPD 646



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A   +RL+L      +    N ++   CK+   ++A  +  +M K+   P+ VT+N  I 
Sbjct: 141 AEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLID 200

Query: 331 YYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPIIHALCEAGRVLEARD 379
                 ++D AI ++  M N  L  G+ T   +  ++  LC+  R  +A++
Sbjct: 201 ARFRAGDVDAAIALVDSMANKGLKPGIVT---FNSVLKGLCKHRRFDKAKE 248


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 132/264 (50%), Gaps = 26/264 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F+R + +   +  ++DM + G + +LVT +   CL+  L + G + EA      M +  C
Sbjct: 312 FSRADRLADAYRVMEDMFKAGISPDLVTYN---CLLDGLCKAGKLEEAHELLEVMVEKDC 368

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PDV  Y++++N LC++G  + AR LLE M   G  C P++ T+  +I  +CK G     
Sbjct: 369 APDVVTYSILVNGLCKLGKVDDARLLLEMMLERG--CQPNLVTFNTMIDGFCKAG----- 421

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ E + +  LM      PDVV Y+ LIDG CK  R++ A  +       G  P
Sbjct: 422 ------KVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------GISP 469

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARD 379
           ++ +Y+S +       ++++A E+M  M     G P TSS Y  II  LC+  R  EA  
Sbjct: 470 DKASYSSMLEGLCSTGKVEEAQEVMDLMTK--QGCPPTSSHYALIIGGLCDVERGDEALK 527

Query: 380 FLAELVDGGSVPREYTYKLVCDAL 403
            L  + + G  P  YTY ++ + L
Sbjct: 528 MLQVMSERGCEPNLYTYSILINGL 551



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 18/262 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             + N ++ +   L++M   G      T S   ++  L E G   EA     +M + +C 
Sbjct: 207 LCKQNQLEEVSKLLEEMVEAGREP--DTFSYNTVVACLCESGKYEEAGKILEKMIEKKCG 264

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  YN +++  C+V   ++A  LLE M   G RC P V TYT LI  + +        
Sbjct: 265 PDVVTYNSLMDGFCKVSKMDEAERLLEDM--VGRRCAPTVITYTTLIGGFSR-------- 314

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A  +   M   G  PD+V YNCL+DG CK  ++E A EL + M +K C P+
Sbjct: 315 ---ADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPD 371

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            VTY+  +     + ++D A  ++  M  L  G  P   ++  +I   C+AG+V E    
Sbjct: 372 VVTYSILVNGLCKLGKVDDARLLLEMM--LERGCQPNLVTFNTMIDGFCKAGKVDEGHKV 429

Query: 381 LAELVDGGSVPREYTYKLVCDA 402
           L  + +    P   TY  + D 
Sbjct: 430 LELMKEVSCTPDVVTYSTLIDG 451



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 28/260 (10%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           + S+   LI      G     L     M   R  PDV  +N ++ A C++G+ ++A    
Sbjct: 23  SNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRA---- 78

Query: 228 EQMELPGFR----CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
               L  FR    C P  +TY ILI   C+            +RI EA  L   M+ K  
Sbjct: 79  ----LSHFRGKMWCSPTAFTYCILIHGLCQC-----------QRIDEAYQLLDEMIQKDC 123

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PD   YNCLI G CK  +I+ A  +   M ++ C+P+ +TY S I      N +D+A +
Sbjct: 124 HPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARK 183

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV---- 399
           +M KM+  +   P + +Y  +++ LC+  ++ E    L E+V+ G  P  ++Y  V    
Sbjct: 184 LMEKMKE-SGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACL 242

Query: 400 CDALNAAEEPSLLDDGLRKR 419
           C++    E   +L+  + K+
Sbjct: 243 CESGKYEEAGKILEKMIEKK 262



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 119/255 (46%), Gaps = 24/255 (9%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L+DM  R     V T   T LI        + +A      M +    PD+  YN +++ 
Sbjct: 289 LLEDMVGRRCAPTVIT--YTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDG 346

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+ G   +A  LLE M      C PDV TY+IL++  CK G           ++ +A  
Sbjct: 347 LCKAGKLEEAHELLEVMVEK--DCAPDVVTYSILVNGLCKLG-----------KVDDARL 393

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L  +ML +G  P++V +N +IDG CK  +++   ++ + M +  C P+ VTY++ I  Y 
Sbjct: 394 LLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYC 453

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             N +  A  ++        G+ P  +SY+ ++  LC  G+V EA++ +  +   G  P 
Sbjct: 454 KANRMQDAFAIL--------GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPT 505

Query: 393 EYTYKLVCDALNAAE 407
              Y L+   L   E
Sbjct: 506 SSHYALIIGGLCDVE 520



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 105/200 (52%), Gaps = 16/200 (8%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           +S + +++ L   G V EA      M +  C P    Y ++I  LC V   ++A  +L+ 
Sbjct: 472 ASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQV 531

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M   G  C P++YTY+ILI+  CK            +R+ +A ++  +ML KG VPDV  
Sbjct: 532 MSERG--CEPNLYTYSILINGLCK-----------TKRVEDAINVLDVMLEKGCVPDVAT 578

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  LIDG CK  +++ A + F  M   GC P+++ YN  I  +     ++KAIE+M+ M 
Sbjct: 579 YTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLM- 637

Query: 350 NLNHGV-PTSSSYTPIIHAL 368
            L  G  P +++Y  ++ +L
Sbjct: 638 -LEKGCNPDAATYFSLMRSL 656



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 14/233 (6%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CLI  L + G ++ A      M +  C PDV  Y  +I   C+    ++AR L+E+M+  
Sbjct: 132 CLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKES 191

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    PD   Y  L++  CK           + ++ E + L   M+  G  PD  +YN +
Sbjct: 192 GL--TPDTVAYNALLNGLCK-----------QNQLEEVSKLLEEMVEAGREPDTFSYNTV 238

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +   C++ + E A ++ + M +K C P+ VTYNS +  +  V+++D+A  ++  M     
Sbjct: 239 VACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVG-RR 297

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
             PT  +YT +I     A R+ +A   + ++   G  P   TY  + D L  A
Sbjct: 298 CAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKA 350



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 3/133 (2%)

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
           ++ R  E    FR        P    Y  LI G  +    +  LE+ ++M  +   P+ +
Sbjct: 1   MKVRPLEGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVI 60

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           T+N+ ++ Y  + ++D+A+   R     +   PT+ +Y  +IH LC+  R+ EA   L E
Sbjct: 61  THNTILKAYCQIGDLDRALSHFRGKMWCS---PTAFTYCILIHGLCQCQRIDEAYQLLDE 117

Query: 384 LVDGGSVPREYTY 396
           ++     P    Y
Sbjct: 118 MIQKDCHPDAAVY 130


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 122/267 (45%), Gaps = 29/267 (10%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+G      +   LIK     G++++A+  F  M+    +PDV  Y  VI ALCR+G  +
Sbjct: 390 GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 449

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------------- 266
            A     QM   G    PD Y Y  LI  +C +G     ++ I                 
Sbjct: 450 DAMEKFNQMIDQGV--APDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS 507

Query: 267 ---------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    R+ +A ++F L +  G  PD V YN L+DG C   ++E+AL +FD M   G
Sbjct: 508 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 567

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLE 376
             PN V Y + +  Y  +  ID+ + + R+M  L  G+ P++  Y+ II  L EAGR + 
Sbjct: 568 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREM--LQRGIKPSTILYSIIIDGLFEAGRTVP 625

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A+    E+ + G      TY +V   L
Sbjct: 626 AKMKFHEMTESGIAMDICTYNIVLRGL 652



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 123/278 (44%), Gaps = 47/278 (16%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D L+ M+  G        +   +I    +EG VN+A   F  M Q    PD+  YN V++
Sbjct: 206 DLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVH 265

Query: 213 ALCRVGNFNKARFLLEQM---------------------------------ELPGFRCPP 239
           ALC+    +KA   L QM                                 E+      P
Sbjct: 266 ALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILP 325

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           DV T ++L+ S CKYG           +I EA  +F  M  KG  PDV +YN +++G   
Sbjct: 326 DVVTLSMLMGSLCKYG-----------KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 374

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTS 358
              +    +LFD M   G  P+  T+N  I+ Y+    +DKA+ +  +M+  +HGV P  
Sbjct: 375 KGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR--DHGVKPDV 432

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +Y  +I ALC  G++ +A +   +++D G  P +Y Y
Sbjct: 433 VTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 470



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 129/266 (48%), Gaps = 22/266 (8%)

Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L++   E    +EAL    +R  +  C PDV++Y++++ +LC  G   +A  LL  M   
Sbjct: 155 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 214

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C P+V  Y  +I  + K G            + +A  LF+ M+ +G  PD+V YN +
Sbjct: 215 GAVCSPNVVAYNTVIDGFFKEG-----------DVNKACDLFKEMVQRGIPPDLVTYNSV 263

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +   CK   +++A      M  K  +PN  TYN+ I  YS   +  +A+ + ++M+   H
Sbjct: 264 VHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR--H 321

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
            + P   + + ++ +LC+ G++ EARD    +   G  P  ++Y ++ +    A +  L+
Sbjct: 322 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGY--ATKGCLV 379

Query: 413 D--DGLRKRIRDGIE---YRFRQVMK 433
           D  D     + DGI    Y F  ++K
Sbjct: 380 DMTDLFDLMLGDGIAPDFYTFNVLIK 405



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 15/218 (6%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           ALA F ++ +   R ++   N ++   C     ++A  +L     P   C PDV++Y+IL
Sbjct: 133 ALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLH-RTPELGCVPDVFSYSIL 191

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV--PDVVAYNCLIDGCCKTYRIER 305
           + S C  G           +  +A+ L R+M   G V  P+VVAYN +IDG  K   + +
Sbjct: 192 LKSLCDQG-----------KSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNK 240

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A +LF +M ++G  P+ VTYNS +        +DKA   +R+M N    +P + +Y  +I
Sbjct: 241 ACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVN-KRVLPNNWTYNNLI 299

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +     G+  EA     E+     +P   T  ++  +L
Sbjct: 300 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSL 337



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 122/286 (42%), Gaps = 15/286 (5%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG  +     + +I  L + G V +A   F         PD   YN++++  C VG   K
Sbjct: 496 NGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEK 555

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  + + M   G    P+V  Y  L++ YCK G           RI E   LFR ML +G
Sbjct: 556 ALRVFDAMVSAGIE--PNVVGYGTLVNGYCKIG-----------RIDEGLSLFREMLQRG 602

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P  + Y+ +IDG  +  R   A   F +M + G   +  TYN  +R        D+AI
Sbjct: 603 IKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAI 662

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            + ++++ +N  +   +  T +I  + +  RV EA+D  A +     VP   TY ++   
Sbjct: 663 FLFKELRAMNVKINIITLNT-MIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITN 721

Query: 403 LNAAEEPSLLDDGLRKRIRDGIEYRFRQVMK-VKPIMKHKELLKCG 447
           L         +D        G E   R +   V+ ++K  E+++ G
Sbjct: 722 LIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAG 767



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 19/201 (9%)

Query: 154 FLKDMSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
             ++M +RG    +  S++  + +I  L E G    A   F+ M +     D+  YN+V+
Sbjct: 594 LFREMLQRG----IKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVL 649

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             L +   F++A FL +  EL       ++ T   +I        QT       RR+ EA
Sbjct: 650 RGLFKNRCFDEAIFLFK--ELRAMNVKINIITLNTMIDGM----FQT-------RRVEEA 696

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             LF  +     VP VV Y+ +I    K   +E A ++F  M   GC PN    N  +R 
Sbjct: 697 KDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRE 756

Query: 332 YSVVNEIDKAIEMMRKMQNLN 352
               NEI +A   + K+   N
Sbjct: 757 LLKKNEIVRAGAYLSKIDERN 777



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 13/184 (7%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P  +TY IL+           C +A R  +  A   F  +L  G   +++  N L++G C
Sbjct: 112 PTSHTYAILMDC---------CTRAHRPELALA--FFGQLLRTGLRVNIIIANHLLEGFC 160

Query: 299 KTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-P 356
           +  R + AL+ L     + GC+P+  +Y+  ++      +  +A +++R M        P
Sbjct: 161 EAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSP 220

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              +Y  +I    + G V +A D   E+V  G  P   TY  V  AL  A      +  L
Sbjct: 221 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 280

Query: 417 RKRI 420
           R+ +
Sbjct: 281 RQMV 284


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 127/250 (50%), Gaps = 16/250 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I+ L + G V EAL+    M    C+P V  Y V++ A+C+   F +A  +L++M  
Sbjct: 149 TPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRA 208

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C P++ TY ++I+  C+ G           R+ +A      +   GF PD V+Y  
Sbjct: 209 KG--CTPNIVTYNVIINGMCREG-----------RVDDAREFLNRLSSYGFQPDTVSYTT 255

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           ++ G C   R E   ELF +M +K C+PN VT++  +R++     +++AI+++ +M    
Sbjct: 256 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMS--G 313

Query: 353 HGVPTSSSYTPI-IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
           HG   +++   I I+ +C+ GRV +A  FL  +   G  P   +Y  V   L  AE    
Sbjct: 314 HGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWED 373

Query: 412 LDDGLRKRIR 421
             + L++ +R
Sbjct: 374 AKELLKEMVR 383



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 17/236 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           GE       T LI+ L   G  ++A       ++     DV+AYN ++   CR G  + A
Sbjct: 73  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAA 132

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           R L+  M +      PD YTYT +I   C  G           R+ EA  L   ML +G 
Sbjct: 133 RRLIASMPVA-----PDAYTYTPIIRGLCDRG-----------RVGEALSLLDDMLHRGC 176

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P VV Y  L++  CK+    +A+E+ D+M  KGC PN VTYN  I        +D A E
Sbjct: 177 QPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARE 236

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            + ++ +     P + SYT ++  LC A R  +  +  AE+++   +P E T+ ++
Sbjct: 237 FLNRLSSYGFQ-PDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDML 291



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 137/311 (44%), Gaps = 28/311 (9%)

Query: 111 GLNKATEFYHWVERFFDFFH-----NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE 165
           GL  A  +    E F +        NE+T   +   F RG  V+     L+ MS  G+G 
Sbjct: 259 GLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMS--GHGC 316

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
              T+    +I  + ++G V++A      M  + C PD  +Y  V+  LCR   +  A+ 
Sbjct: 317 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKE 376

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           LL++M      CPP+  T+   I   C+ G+           I +A  L   M   G   
Sbjct: 377 LLKEMVRKN--CPPNEVTFNTFICILCQKGL-----------IEQATMLIEQMSEHGCEV 423

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           ++V YN L++G C   R++ ALELF  M    C PN +TY + +        +D A E++
Sbjct: 424 NIVTYNALVNGFCVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELL 480

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL-- 403
            +M       P   ++  ++   C+ G + EA + + ++++ G  P   TY  + D +  
Sbjct: 481 AEMLQ-KDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITK 539

Query: 404 --NAAEEPSLL 412
             N+ E   LL
Sbjct: 540 DCNSEEALELL 550



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 125/273 (45%), Gaps = 19/273 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           NE+T      +  +   ++     ++ MS  G    V   +   L+     +G V+ AL 
Sbjct: 389 NEVTFNTFICILCQKGLIEQATMLIEQMSEHGCE--VNIVTYNALVNGFCVQGRVDSALE 446

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            FY M    C+P+   Y  ++  LC     + A  LL +M      C P+V T+ +L+S 
Sbjct: 447 LFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD--CAPNVVTFNVLVSF 501

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           +C+ G+             EA  L   M+  G  P+++ YN L+DG  K    E ALEL 
Sbjct: 502 FCQKGLMD-----------EAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELL 550

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
             +   G  P+ VTY+S I   S  + +++AI+M   +Q+L    P +  Y  I+ ALC+
Sbjct: 551 HGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMR-PKAVIYNKILLALCK 609

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                 A DF A +V  G +P E TY  + + L
Sbjct: 610 RCNTDGAIDFFAYMVSNGCMPNELTYITLIEGL 642



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 133/351 (37%), Gaps = 103/351 (29%)

Query: 148 VKGLWD---------FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
           ++GL D          L DM  RG    V T +V  L++ + +     +A+     M+  
Sbjct: 152 IRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTV--LLEAVCKSTGFGQAMEVLDEMRAK 209

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR---------------------- 236
            C P++  YNV+IN +CR G  + AR  L ++   GF+                      
Sbjct: 210 GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDV 269

Query: 237 -----------CPPDVYTYTILISSYCKYGM-------------------QTGCRKAI-- 264
                      C P+  T+ +L+  +C+ GM                    T C   I  
Sbjct: 270 EELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINT 329

Query: 265 ---RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              + R+ +A      M   G  PD ++Y  ++ G C+  R E A EL  +M +K C PN
Sbjct: 330 ICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 389

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-------------------------- 355
            VT+N+FI        I++A  ++ +M    HG                           
Sbjct: 390 EVTFNTFICILCQKGLIEQATMLIEQMS--EHGCEVNIVTYNALVNGFCVQGRVDSALEL 447

Query: 356 -------PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
                  P + +YT ++  LC A R+  A + LAE++     P   T+ ++
Sbjct: 448 FYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVL 498



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 106/234 (45%), Gaps = 23/234 (9%)

Query: 122 VERFFDFFHNEMTCKEMGIVFA-------RGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           V+   + F++ M CK   I +            +    + L +M ++     V T +V  
Sbjct: 441 VDSALELFYS-MPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV-- 497

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+    ++GL++EA+    +M +  C P++  YN +++ + +  N  +A  LL  +   G
Sbjct: 498 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 557

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD+ TY+ +I    +             R+ EA  +F ++   G  P  V YN ++
Sbjct: 558 VS--PDIVTYSSIIGVLSR-----------EDRVEEAIKMFHIVQDLGMRPKAVIYNKIL 604

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
              CK    + A++ F  M   GC+PN +TY + I   +  + + +  +++R++
Sbjct: 605 LALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLREL 658



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 4/143 (2%)

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
           R   R  + EA  L      +G  PDV     LI   C+  R   A  +     + G   
Sbjct: 52  RLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAV 111

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +   YN+ +  Y    ++D A  ++  M       P + +YTPII  LC+ GRV EA   
Sbjct: 112 DVFAYNTLVAGYCRYGQLDAARRLIASMPV----APDAYTYTPIIRGLCDRGRVGEALSL 167

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L +++  G  P   TY ++ +A+
Sbjct: 168 LDDMLHRGCQPSVVTYTVLLEAV 190


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 127/250 (50%), Gaps = 16/250 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I+ L + G V EAL+    M    C+P V  Y V++ A+C+   F +A  +L++M  
Sbjct: 180 TPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRA 239

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C P++ TY ++I+  C+ G           R+ +A      +   GF PD V+Y  
Sbjct: 240 KG--CTPNIVTYNVIINGMCREG-----------RVDDAREFLNRLSSYGFQPDTVSYTT 286

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           ++ G C   R E   ELF +M +K C+PN VT++  +R++     +++AI+++ +M    
Sbjct: 287 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMS--G 344

Query: 353 HGVPTSSSYTPI-IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
           HG   +++   I I+ +C+ GRV +A  FL  +   G  P   +Y  V   L  AE    
Sbjct: 345 HGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWED 404

Query: 412 LDDGLRKRIR 421
             + L++ +R
Sbjct: 405 AKELLKEMVR 414



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 17/236 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           GE       T LI+ L   G  ++A       ++     DV+AYN ++   CR G  + A
Sbjct: 104 GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAA 163

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           R L+  M +      PD YTYT +I   C  G           R+ EA  L   ML +G 
Sbjct: 164 RRLIASMPVA-----PDAYTYTPIIRGLCDRG-----------RVGEALSLLDDMLHRGC 207

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P VV Y  L++  CK+    +A+E+ D+M  KGC PN VTYN  I        +D A E
Sbjct: 208 QPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARE 267

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            + ++ +     P + SYT ++  LC A R  +  +  AE+++   +P E T+ ++
Sbjct: 268 FLNRLSSYGFQ-PDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDML 322



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 23/286 (8%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           NE+T   +   F RG  V+     L+ MS  G+G    T+    +I  + ++G V++A  
Sbjct: 315 NEVTFDMLVRFFCRGGMVERAIQVLEQMS--GHGCAANTTLCNIVINTICKQGRVDDAFQ 372

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
               M  + C PD  +Y  V+  LCR   +  A+ LL++M      CPP+  T+   I  
Sbjct: 373 FLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKN--CPPNEVTFNTFICI 430

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            C+ G+           I +A  L   M   G   ++V YN L++G C   R++ ALELF
Sbjct: 431 LCQKGL-----------IEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELF 479

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
             M    C PN +TY + +        +D A E++ +M       P   ++  ++   C+
Sbjct: 480 YSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQ-KDCAPNVVTFNVLVSFFCQ 535

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLL 412
            G + EA + + ++++ G  P   TY  + D +    N+ E   LL
Sbjct: 536 KGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELL 581



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 126/273 (46%), Gaps = 19/273 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           NE+T      +  +   ++     ++ MS  G    + T +   L+     +G V+ AL 
Sbjct: 420 NEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNA--LVNGFCVQGRVDSALE 477

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            FY M    C+P+   Y  ++  LC     + A  LL +M      C P+V T+ +L+S 
Sbjct: 478 LFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD--CAPNVVTFNVLVSF 532

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           +C+ G+             EA  L   M+  G  P+++ YN L+DG  K    E ALEL 
Sbjct: 533 FCQKGLMD-----------EAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELL 581

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
             +   G  P+ VTY+S I   S  + +++AI+M   +Q+L    P +  Y  I+ ALC+
Sbjct: 582 HGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMR-PKAVIYNKILLALCK 640

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                 A DF A +V  G +P E TY  + + L
Sbjct: 641 RCNTDGAIDFFAYMVSNGCMPNELTYITLIEGL 673



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 133/351 (37%), Gaps = 103/351 (29%)

Query: 148 VKGLWD---------FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
           ++GL D          L DM  RG    V T +V  L++ + +     +A+     M+  
Sbjct: 183 IRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTV--LLEAVCKSTGFGQAMEVLDEMRAK 240

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR---------------------- 236
            C P++  YNV+IN +CR G  + AR  L ++   GF+                      
Sbjct: 241 GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDV 300

Query: 237 -----------CPPDVYTYTILISSYCKYGM-------------------QTGCRKAI-- 264
                      C P+  T+ +L+  +C+ GM                    T C   I  
Sbjct: 301 EELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINT 360

Query: 265 ---RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              + R+ +A      M   G  PD ++Y  ++ G C+  R E A EL  +M +K C PN
Sbjct: 361 ICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPN 420

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-------------------------- 355
            VT+N+FI        I++A  ++ +M    HG                           
Sbjct: 421 EVTFNTFICILCQKGLIEQATMLIEQMS--EHGCEVNIVTYNALVNGFCVQGRVDSALEL 478

Query: 356 -------PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
                  P + +YT ++  LC A R+  A + LAE++     P   T+ ++
Sbjct: 479 FYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVL 529



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 106/234 (45%), Gaps = 23/234 (9%)

Query: 122 VERFFDFFHNEMTCKEMGIVFA-------RGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           V+   + F++ M CK   I +            +    + L +M ++     V T +V  
Sbjct: 472 VDSALELFYS-MPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV-- 528

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+    ++GL++EA+    +M +  C P++  YN +++ + +  N  +A  LL  +   G
Sbjct: 529 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 588

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD+ TY+ +I    +             R+ EA  +F ++   G  P  V YN ++
Sbjct: 589 VS--PDIVTYSSIIGVLSR-----------EDRVEEAIKMFHIVQDLGMRPKAVIYNKIL 635

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
              CK    + A++ F  M   GC+PN +TY + I   +  + + +  +++R++
Sbjct: 636 LALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLREL 689



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G  PDV     LI   C+  R   A  +     + G   +   YN+ +  Y    ++D 
Sbjct: 103 RGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDA 162

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A  ++  M       P + +YTPII  LC+ GRV EA   L +++  G  P   TY ++ 
Sbjct: 163 ARRLIASMPV----APDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLL 218

Query: 401 DAL 403
           +A+
Sbjct: 219 EAV 221


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 138/291 (47%), Gaps = 16/291 (5%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           TC +M  +F + N ++  W    +M R      V T ++  ++ VL +EG + +A     
Sbjct: 194 TCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNI--MVNVLCKEGKLKKAREFIG 251

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            M+    +P+V +YN +I+     GN   AR +L+ M + G    PD YTY  LIS  CK
Sbjct: 252 FMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIE--PDSYTYGSLISGMCK 309

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           R+ EA+ LF  M+  G VP+ V YN LIDG C    +ERA    D+M
Sbjct: 310 EG-----------RLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEM 358

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            KKG +P+  TYN  +    +   + +A +M+++M+     +P + +Y  +I+     G 
Sbjct: 359 VKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRK-KGIIPDAITYNILINGYSRCGN 417

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
             +A D   E++  G  P   TY  +   L+        DD   K +  G+
Sbjct: 418 AKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV 468



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 16/262 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + + S+   L+  L  EG + EA      M++    PD   YN++IN   R GN  KA
Sbjct: 362 GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKA 421

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L  +M   G    P   TYT LI    +           R R+ EA+ LF  +L +G 
Sbjct: 422 FDLHNEMLSKGIE--PTHVTYTSLIYVLSR-----------RNRMKEADDLFEKILDQGV 468

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PDV+ +N ++DG C    +ERA  L  +M++K   P+ VT+N+ ++      ++++A  
Sbjct: 469 SPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARM 528

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           ++ +M+    G+ P   SY  +I      G + +A     E++  G  P   TY  +   
Sbjct: 529 LLDEMK--RRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKC 586

Query: 403 LNAAEEPSLLDDGLRKRIRDGI 424
           L   +E  L ++ L++ +  GI
Sbjct: 587 LCKNQEGDLAEELLKEMVNKGI 608



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 28/212 (13%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           ++R  N K  +D   +M  +G     T  + T LI VL     + EA   F ++      
Sbjct: 412 YSRCGNAKKAFDLHNEMLSKGIEP--THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 469

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  +N +++  C  GN  +A  LL++M+      PPD  T+  L+   C+ G     R
Sbjct: 470 PDVIMFNAMVDGHCANGNVERAFMLLKEMDRKS--VPPDEVTFNTLMQGRCREGKVEEAR 527

Query: 262 ---KAIRRRIWEANHL------------------FRL---MLFKGFVPDVVAYNCLIDGC 297
                ++RR  + +H+                  FR+   ML  GF P ++ YN LI   
Sbjct: 528 MLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCL 587

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           CK    + A EL  +M  KG  P+  TY S I
Sbjct: 588 CKNQEGDLAEELLKEMVNKGISPDDSTYLSLI 619



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
           G R A  R +++   L R  L    V   + ++ L+  CC+  R + A + F  M +KG 
Sbjct: 132 GTRIATNRELFDELTLSRDRLS---VKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGI 188

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           +P   T N  +  +  +N ++ A  +  +M  L     T  ++  +++ LC+ G++ +AR
Sbjct: 189 VPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRIS-STVYTFNIMVNVLCKEGKLKKAR 247

Query: 379 DFLAELVDGGSVPREYTYKLV 399
           +F+  +   G  P   +Y  +
Sbjct: 248 EFIGFMEGLGFKPNVVSYNTI 268


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 129/258 (50%), Gaps = 25/258 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++  L +EGLV EA      M       DV+ YN +I+  C  G F  A  LL +M +  
Sbjct: 202 VVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKE 261

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDVYT+ IL+ + CK GM           + EA ++F LM+ +G  PDVV+ N L+
Sbjct: 262 -DVRPDVYTFNILVDALCKLGM-----------VAEARNVFGLMIKRGLEPDVVSCNALM 309

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G C    +  A E+FD M ++G +PN ++Y++ I  Y  V  +D+A+ ++ +M   N  
Sbjct: 310 NGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNL- 368

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
           VP + +Y  ++  L ++GRVL   D +  +   G  P   TY +            LLDD
Sbjct: 369 VPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNV------------LLDD 416

Query: 415 GLRKRIRDGIEYRFRQVM 432
            L++   D     F+ ++
Sbjct: 417 YLKRECLDKALALFQHIV 434



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L + G+V EA   F  M +    PDV + N ++N  C  G  ++A+ + ++M   G
Sbjct: 273 LVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERG 332

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V +Y+ LI+ YCK  M           + EA  L   M  +  VPD V YNCL+
Sbjct: 333 KL--PNVISYSTLINGYCKVKM-----------VDEALRLLTEMHQRNLVPDTVTYNCLL 379

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K+ R+    +L + M   G  P+ +TYN  +  Y     +DKA+ + + +  ++ G
Sbjct: 380 DGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHI--VDTG 437

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + P   +Y  +I  LC+ GR+  A++    L   G  P   TY ++ + L
Sbjct: 438 ISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGL 487



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 16/208 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G+L    S + LI    +  +V+EAL     M Q    PD   YN +++ L + G     
Sbjct: 332 GKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYE 391

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L+E M   G    PD+ TY +L+  Y K           R  + +A  LF+ ++  G 
Sbjct: 392 WDLVEAMRASGQ--APDLITYNVLLDDYLK-----------RECLDKALALFQHIVDTGI 438

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P++  YN LIDG CK  R++ A E+F  ++ KGC PN  TYN  I    +  E      
Sbjct: 439 SPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMIN--GLRREGLLDEA 496

Query: 344 MMRKMQNLNHGVPTSS-SYTPIIHALCE 370
               ++ ++ G P ++ ++ P++ AL E
Sbjct: 497 EALLLEMVDDGFPPNAVTFDPLVRALLE 524



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 20/239 (8%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
            LVT S     +  LG+ GL    +A   + + F   P  +    ++  LC  G   +A 
Sbjct: 90  SLVTLSIFINSLTHLGQMGLAFSVMAKIVK-RGFGVDP--FTLTTLMKGLCLKGRTFEAL 146

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            L +     GF    D   Y  LI+  CK G           +  +A  L R M   G  
Sbjct: 147 NLYDHAVSKGFSF--DEVCYGTLINGLCKMG-----------KTRDAIELLRKMEKGGVR 193

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+++ YN ++DG CK   +  A  L  +M  KG   +  TYNS I  +    +   A+ +
Sbjct: 194 PNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRL 253

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + +M       P   ++  ++ ALC+ G V EAR+    ++  G  P   +    C+AL
Sbjct: 254 LNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVS----CNAL 308



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 15/221 (6%)

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
           K L +    ++A++TF+RM      P + + N +++++ +  ++     L   ++  G  
Sbjct: 28  KTLPKTPTFDDAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTP 87

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
             P + T +I I+S    G Q G   ++  +I +          +GF  D      L+ G
Sbjct: 88  -KPSLVTLSIFINSLTHLG-QMGLAFSVMAKIVK----------RGFGVDPFTLTTLMKG 135

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV- 355
            C   R   AL L+D    KG   + V Y + I     + +   AIE++RKM+    GV 
Sbjct: 136 LCLKGRTFEALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEK--GGVR 193

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           P    Y  ++  LC+ G V EA    +E+V  G     +TY
Sbjct: 194 PNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTY 234



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 15/143 (10%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           WD ++ M   G    + T +V  L   L  E L ++ALA F  +      P++  YN++I
Sbjct: 392 WDLVEAMRASGQAPDLITYNVL-LDDYLKRECL-DKALALFQHIVDTGISPNIRTYNILI 449

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + LC+ G    A+ + + + + G  C P++ TY I+I+   + G+             EA
Sbjct: 450 DGLCKGGRMKAAKEIFQLLSVKG--CRPNIRTYNIMINGLRREGLLD-----------EA 496

Query: 272 NHLFRLMLFKGFVPDVVAYNCLI 294
             L   M+  GF P+ V ++ L+
Sbjct: 497 EALLLEMVDDGFPPNAVTFDPLV 519



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 2/156 (1%)

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSF 328
           +A   F  ML     P +V+ N L+    KT      + L   ++ KG   P+ VT + F
Sbjct: 38  DAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLSIF 97

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           I   + + ++  A  +M K+     GV    + T ++  LC  GR  EA +     V  G
Sbjct: 98  INSLTHLGQMGLAFSVMAKIVKRGFGV-DPFTLTTLMKGLCLKGRTFEALNLYDHAVSKG 156

Query: 389 SVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
               E  Y  + + L    +     + LRK  + G+
Sbjct: 157 FSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGV 192


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 126/254 (49%), Gaps = 19/254 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + LK+M  RG    +TT ++  ++      G  NEA   F  MK+ +C  DV  Y  VI+
Sbjct: 217 EMLKEMVERGLTPNLTTYNI--MLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIH 274

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            L  VG   +AR +  QM   G    P V T+  LI   CK           +  +  A 
Sbjct: 275 GLGVVGEIKRARNVFNQMVKDGVL--PSVATFNALIQILCK-----------KDSVENAI 321

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F  M+ +G+VP+ + YN +I G C    ++RA+EL + M    C PN  TYN  IRY+
Sbjct: 322 LIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYF 381

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC---EAGRVLEARDFLAELVDGGS 389
               EI+K +++ +KM N    +P   +Y  +I+++     +  +L A   L E+VD G 
Sbjct: 382 CDAGEIEKGLDLFQKMGN-GDCLPNLDTYNILINSMFVRKNSDNLLVAGKLLVEMVDRGF 440

Query: 390 VPREYTYKLVCDAL 403
           +PR+ T+  V D L
Sbjct: 441 LPRKLTFNRVLDGL 454



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 129/270 (47%), Gaps = 28/270 (10%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           MS    G     SS   ++ VL +   V  A   F  +K  + + D  +YN+++N  C +
Sbjct: 151 MSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKG-KFKADCVSYNIIVNGWCLI 209

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG---------MQTGCRK------ 262
               KA  +L++M   G    P++ TY I+++ Y + G         ++   RK      
Sbjct: 210 KRTPKALEMLKEMVERGL--TPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVV 267

Query: 263 ---------AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                     +   I  A ++F  M+  G +P V  +N LI   CK   +E A+ +F++M
Sbjct: 268 TYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEM 327

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            K+G +PN +TYN  IR    V E+ +A+E+M +M++ +   P   +Y  +I   C+AG 
Sbjct: 328 VKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMED-DDCEPNVQTYNILIRYFCDAGE 386

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + +  D   ++ +G  +P   TY ++ +++
Sbjct: 387 IEKGLDLFQKMGNGDCLPNLDTYNILINSM 416



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 119/264 (45%), Gaps = 22/264 (8%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           RM+  R  P    + ++      +G  ++A  +   M +  + C  D+ ++  ++   CK
Sbjct: 117 RMRSCRLGPSPRTFAIIAERYAAMGKPHRAVTVF--MSMHEYGCFQDLSSFNTILDVLCK 174

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                       +R+  A +LF+ +  K F  D V+YN +++G C   R  +ALE+  +M
Sbjct: 175 -----------SKRVEMAYNLFKALKGK-FKADCVSYNIIVNGWCLIKRTPKALEMLKEM 222

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            ++G  PN  TYN  +  Y    + ++A     +M+     +    +YT +IH L   G 
Sbjct: 223 VERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDV-VTYTSVIHGLGVVGE 281

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLLDDGLRKR--IRDGIEYRF 428
           +  AR+   ++V  G +P   T+  +   L   ++ E   L+ + + KR  + + I Y  
Sbjct: 282 IKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNL 341

Query: 429 --RQVMKVKPIMKHKELLKCGEID 450
             R +  V  + +  EL++  E D
Sbjct: 342 VIRGLCHVGEMQRAMELMERMEDD 365



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 29/187 (15%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G L + ++   LI++L ++  V  A+  F  M +    P+   YN+VI  LC VG   +
Sbjct: 295 DGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQR 354

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-----------MQTG-C---------- 260
           A  L+E+ME     C P+V TY ILI  +C  G           M  G C          
Sbjct: 355 AMELMERMEDDD--CEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNIL 412

Query: 261 --RKAIRRR---IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                +R+    +  A  L   M+ +GF+P  + +N ++DG   T   + A E+      
Sbjct: 413 INSMFVRKNSDNLLVAGKLLVEMVDRGFLPRKLTFNRVLDGLLLTGNQDFAKEILSLQGG 472

Query: 316 KGCIPNR 322
            G +P +
Sbjct: 473 CGRLPRK 479


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 127/250 (50%), Gaps = 16/250 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I+ L + G V EAL+    M    C+P V  Y V++ A+C+   F +A  +L++M  
Sbjct: 149 TPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRA 208

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C P++ TY ++I+  C+ G           R+ +A      +   GF PD V+Y  
Sbjct: 209 KG--CTPNIVTYNVIINGMCREG-----------RVDDAREFLNRLSSYGFQPDTVSYTT 255

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           ++ G C   R E   ELF +M +K C+PN VT++  +R++     +++AI+++ +M    
Sbjct: 256 VLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMS--G 313

Query: 353 HGVPTSSSYTPI-IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
           HG   +++   I I+ +C+ GRV +A  FL  +   G  P   +Y  V   L  AE    
Sbjct: 314 HGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWED 373

Query: 412 LDDGLRKRIR 421
             + L++ +R
Sbjct: 374 AKELLKEMVR 383



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 17/236 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           GE       T LI+ L   G  ++A       ++     DV+AYN ++   CR G  + A
Sbjct: 73  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAA 132

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           R L+  M +      PD YTYT +I   C  G           R+ EA  L   ML +G 
Sbjct: 133 RRLIASMPVA-----PDAYTYTPIIRGLCDRG-----------RVGEALSLLDDMLHRGC 176

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P VV Y  L++  CK+    +A+E+ D+M  KGC PN VTYN  I        +D A E
Sbjct: 177 QPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARE 236

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            + ++ +     P + SYT ++  LC A R  +  +  AE+++   +P E T+ ++
Sbjct: 237 FLNRLSSYGFQ-PDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDML 291



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 139/324 (42%), Gaps = 39/324 (12%)

Query: 111 GLNKATEFYHWVERFFDFFH-----NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE 165
           GL  A  +    E F +        NE+T   +   F RG  V+     L+ MS  G+G 
Sbjct: 259 GLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMS--GHGC 316

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
              T+    +I  + ++G V++A      M  + C PD  +Y  V+  LCR   +  A+ 
Sbjct: 317 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKE 376

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGM------------QTGCRKAI--------- 264
           LL++M      CPP+  T+   I   C+ G+            + GC   I         
Sbjct: 377 LLKEMVRKN--CPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNG 434

Query: 265 ---RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              + R+  A  LF  M  K   P+ + Y  L+ G C   R++ A EL  +M +K C PN
Sbjct: 435 FCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPN 491

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDF 380
            VT+N  + ++     +D+AIE++ +M  + HG  P   +Y  ++  +       EA + 
Sbjct: 492 VVTFNVLVSFFCQKGLMDEAIELVEQM--MEHGCTPNLITYNTLLDGITNDCNSEEALEL 549

Query: 381 LAELVDGGSVPREYTYKLVCDALN 404
           L  LV  G  P   TY  +   L+
Sbjct: 550 LHGLVSNGVSPDIVTYSSIIGVLS 573



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 124/273 (45%), Gaps = 19/273 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           NE+T      +  +   ++     ++ MS  G    V   +   L+     +G V+ AL 
Sbjct: 389 NEVTFNTFICILCQKGLIEQATMLIEQMSEHGCE--VNIVTYNALVNGFCVQGRVDSALE 446

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            FY M    C+P+   Y  ++  LC     + A  LL +M      C P+V T+ +L+S 
Sbjct: 447 LFYSMP---CKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKD--CAPNVVTFNVLVSF 501

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           +C+ G+             EA  L   M+  G  P+++ YN L+DG       E ALEL 
Sbjct: 502 FCQKGLMD-----------EAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELL 550

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
             +   G  P+ VTY+S I   S  + +++AI+M   +Q+L    P +  Y  I+ ALC+
Sbjct: 551 HGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMR-PKAVIYNKILLALCK 609

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                 A DF A +V  G +P E TY  + + L
Sbjct: 610 RCNTDGAIDFFAYMVSNGCMPNELTYITLIEGL 642



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 105/234 (44%), Gaps = 23/234 (9%)

Query: 122 VERFFDFFHNEMTCKEMGIVFA-------RGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           V+   + F++ M CK   I +            +    + L +M ++     V T +V  
Sbjct: 441 VDSALELFYS-MPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNV-- 497

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+    ++GL++EA+    +M +  C P++  YN +++ +    N  +A  LL  +   G
Sbjct: 498 LVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNG 557

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD+ TY+ +I    +             R+ EA  +F ++   G  P  V YN ++
Sbjct: 558 VS--PDIVTYSSIIGVLSR-----------EDRVEEAIKMFHIVQDLGMRPKAVIYNKIL 604

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
              CK    + A++ F  M   GC+PN +TY + I   +  + + +  +++R++
Sbjct: 605 LALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLREL 658



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 4/143 (2%)

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
           R   R  + EA  L      +G  PDV     LI   C+  R   A  +     + G   
Sbjct: 52  RLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAV 111

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +   YN+ +  Y    ++D A  ++  M       P + +YTPII  LC+ GRV EA   
Sbjct: 112 DVFAYNTLVAGYCRYGQLDAARRLIASMPV----APDAYTYTPIIRGLCDRGRVGEALSL 167

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L +++  G  P   TY ++ +A+
Sbjct: 168 LDDMLHRGCQPSVVTYTVLLEAV 190


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 138/291 (47%), Gaps = 16/291 (5%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           TC +M  +F + N ++  W    +M R      V T ++  ++ VL +EG + +A     
Sbjct: 216 TCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNI--MVNVLCKEGKLKKAREFIG 273

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            M+    +P+V +YN +I+     GN   AR +L+ M + G    PD YTY  LIS  CK
Sbjct: 274 FMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIE--PDSYTYGSLISGMCK 331

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           R+ EA+ LF  M+  G VP+ V YN LIDG C    +ERA    D+M
Sbjct: 332 EG-----------RLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEM 380

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            KKG +P+  TYN  +    +   + +A +M+++M+     +P + +Y  +I+     G 
Sbjct: 381 VKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRK-KGIIPDAITYNILINGYSRCGN 439

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
             +A D   E++  G  P   TY  +   L+        DD   K +  G+
Sbjct: 440 AKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV 490



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 16/262 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + + S+   L+  L  EG + EA      M++    PD   YN++IN   R GN  KA
Sbjct: 384 GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKA 443

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L  +M   G    P   TYT LI    +           R R+ EA+ LF  +L +G 
Sbjct: 444 FDLHNEMLSKGIE--PTHVTYTSLIYVLSR-----------RNRMKEADDLFEKILDQGV 490

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PDV+ +N ++DG C    +ERA  L  +M++K   P+ VT+N+ ++      ++++A  
Sbjct: 491 SPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARM 550

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           ++ +M+    G+ P   SY  +I      G + +A     E++  G  P   TY  +   
Sbjct: 551 LLDEMK--RRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKC 608

Query: 403 LNAAEEPSLLDDGLRKRIRDGI 424
           L   +E  L ++ L++ +  GI
Sbjct: 609 LCKNQEGDLAEELLKEMVNKGI 630



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 28/212 (13%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           ++R  N K  +D   +M  +G     T  + T LI VL     + EA   F ++      
Sbjct: 434 YSRCGNAKKAFDLHNEMLSKGIEP--THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 491

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  +N +++  C  GN  +A  LL++M+      PPD  T+  L+   C+ G     R
Sbjct: 492 PDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSV--PPDEVTFNTLMQGRCREGKVEEAR 549

Query: 262 ---KAIRRRIWEANHL------------------FRL---MLFKGFVPDVVAYNCLIDGC 297
                ++RR  + +H+                  FR+   ML  GF P ++ YN LI   
Sbjct: 550 MLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCL 609

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           CK    + A EL  +M  KG  P+  TY S I
Sbjct: 610 CKNQEGDLAEELLKEMVNKGISPDDSTYLSLI 641



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
           G R A  R +++   L R  L    V   + ++ L+  CC+  R + A + F  M +KG 
Sbjct: 154 GTRIATNRELFDELTLSRDRLS---VKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGI 210

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           +P   T N  +  +  +N ++ A  +  +M  L     T  ++  +++ LC+ G++ +AR
Sbjct: 211 VPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRIS-STVYTFNIMVNVLCKEGKLKKAR 269

Query: 379 DFLAELVDGGSVPREYTYKLV 399
           +F+  +   G  P   +Y  +
Sbjct: 270 EFIGFMEGLGFKPNVVSYNTI 290


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 32/256 (12%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK L ++GL+  AL     M +  C+PD++ YN++IN LC++G  + A  L+      G
Sbjct: 476 LIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKG 535

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIR--RRIW----------------------- 269
             C PD++TY  L+  YC+   Q     AI    R+W                       
Sbjct: 536 --CIPDIFTYNTLVDGYCR---QLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAK 590

Query: 270 --EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
             E   +F+ M  KG  P+++ YN +I+  C + ++  A++L  +M  KG  P+ V++ +
Sbjct: 591 SEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGT 650

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I  +  V ++D A  + R M+       T+++Y  II A  E   +  A    +E+   
Sbjct: 651 LITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKN 710

Query: 388 GSVPREYTYKLVCDAL 403
           G  P  YTY+++ D  
Sbjct: 711 GCDPDNYTYRVLIDGF 726



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 120/252 (47%), Gaps = 29/252 (11%)

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           ++  G +G + EA+ TF RM  F C P VY+YN ++N L   G FN+A  +   M +   
Sbjct: 162 MRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVY--MRMKDK 219

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRR------------------IWE------A 271
           +   DVYTYTI I S+C+ G      + +R                     +E      A
Sbjct: 220 KVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRA 279

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             LF  ML     PDV  +N L+   CK   +  +  LFD + K+G  PN  T+N FI+ 
Sbjct: 280 RELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQG 339

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                 +D+A+ ++  +     G+ P   +Y  +I  LC   RV+EA + L ++V+GG  
Sbjct: 340 LCKEGSLDRAVRLLGCVS--REGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFE 397

Query: 391 PREYTYKLVCDA 402
           P ++TY  + D 
Sbjct: 398 PNDFTYNSIIDG 409



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 14/228 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            I+ L +EG ++ A+     + +   RPDV  YN VI  LCR     +A   L +M   G
Sbjct: 336 FIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGG 395

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F   P+ +TY  +I  YCK GM           + +AN + +  +FKGF PD   Y  L+
Sbjct: 396 FE--PNDFTYNSIIDGYCKKGM-----------VVDANRILKDAVFKGFKPDEFTYCSLV 442

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G C+    ++A+ +F D   KG  P+ + YN+ I+       I  A+++M +M      
Sbjct: 443 NGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAE-KGC 501

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            P   +Y  II+ LC+ G + +A   + + +  G +P  +TY  + D 
Sbjct: 502 KPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDG 549



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 137/312 (43%), Gaps = 37/312 (11%)

Query: 123 ERFFDFFHNEMTCKEMGI--VFARGNNVKGLWD----FLKDMSRRG-NGELVTTSSVTCL 175
           ER FD       C  +    +F +G   +G  D     L  +SR G   ++VT ++V C 
Sbjct: 315 ERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVIC- 373

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
              L  +  V EA    ++M      P+ + YN +I+  C+ G    A  +L+     GF
Sbjct: 374 --GLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGF 431

Query: 236 RCPPDVYTYTILISSYCKYG--------MQTGCRKAIRRRIWEANHLFRLMLFKGFV--- 284
           +  PD +TY  L++ +C+ G         + G  K +R  I   N L + +  +G +   
Sbjct: 432 K--PDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPA 489

Query: 285 -------------PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
                        PD+  YN +I+G CK   +  A  L  D   KGCIP+  TYN+ +  
Sbjct: 490 LQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDG 549

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           Y    ++D AIE++ +M +     P   +Y  +++ LC+  +  E  +    + + G  P
Sbjct: 550 YCRQLKLDSAIELVNRMWSQGM-TPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAP 608

Query: 392 REYTYKLVCDAL 403
              TY  + ++L
Sbjct: 609 NIITYNTIIESL 620



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L ++G V E+   F ++ +    P+++ +N+ I  LC+ G+ ++A  LL  +   G
Sbjct: 301 LVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREG 360

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R  PDV TY  +I   C+           + R+ EA      M+  GF P+   YN +I
Sbjct: 361 LR--PDVVTYNTVICGLCR-----------KSRVVEAEECLHKMVNGGFEPNDFTYNSII 407

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK   +  A  +  D   KG  P+  TY S +  +    + D+A+ + +    L  G
Sbjct: 408 DGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFK--DGLGKG 465

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + P+   Y  +I  LC+ G +L A   + E+ + G  P  +TY L+ + L
Sbjct: 466 LRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGL 515



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 17/207 (8%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           E +  F  M +  C P++  YN +I +LC     N+A  LL +M+  G    PDV ++  
Sbjct: 593 EVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGL--TPDVVSFGT 650

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA-YNCLIDGCCKTYRIER 305
           LI+ +CK G   G           A  LFR M  +  V    A YN +I    +   ++ 
Sbjct: 651 LITGFCKVGDLDG-----------AYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKM 699

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPI 364
           AL LF +M K GC P+  TY   I  +     +++  + +  ++N+  G +P+ +++  +
Sbjct: 700 ALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFL--LENIEKGFIPSLTTFGRV 757

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVP 391
           ++ LC   +V EA   +  +V    VP
Sbjct: 758 LNCLCVEHKVQEAVGIIHLMVQKDIVP 784



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 16/148 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +  ++ G +   + M ++ +    TT++   +I    E+  +  AL  F  MK+  C 
Sbjct: 655 FCKVGDLDGAYGLFRGMEKQYDVSH-TTATYNIIISAFSEQLNMKMALRLFSEMKKNGCD 713

Query: 202 PDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           PD Y Y V+I+  C+ GN N+  +FLLE +E  GF   P + T+  +++  C        
Sbjct: 714 PDNYTYRVLIDGFCKTGNVNQGYKFLLENIE-KGF--IPSLTTFGRVLNCLC-------- 762

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVV 288
              +  ++ EA  +  LM+ K  VPD V
Sbjct: 763 ---VEHKVQEAVGIIHLMVQKDIVPDTV 787



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 53/210 (25%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           + +  K M+ +G    + T +   +I+ L     VNEA+     MK     PDV ++  +
Sbjct: 594 VMEIFKAMTEKGCAPNIITYNT--IIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTL 651

Query: 211 INALCRVGNFNKARFLLEQME---------------LPGFR------------------- 236
           I   C+VG+ + A  L   ME               +  F                    
Sbjct: 652 ITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNG 711

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF---KGFVPDVVAYNCL 293
           C PD YTY +LI  +CK G                N  ++ +L    KGF+P +  +  +
Sbjct: 712 CDPDNYTYRVLIDGFCKTG--------------NVNQGYKFLLENIEKGFIPSLTTFGRV 757

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRV 323
           ++  C  ++++ A+ +   M +K  +P+ V
Sbjct: 758 LNCLCVEHKVQEAVGIIHLMVQKDIVPDTV 787


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 128/257 (49%), Gaps = 20/257 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+   +E  V +A+     M+    +PDV  YNV+IN +C+ G  ++A   L  M  
Sbjct: 255 TILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM-- 312

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
           P + C P+V T+ I++ S C  G           R  +A  L   ML KG  P VV +N 
Sbjct: 313 PSYGCQPNVITHNIILRSMCSTG-----------RWMDAEKLLSDMLRKGCSPSVVTFNI 361

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI+  C+   + RA+++ + M   GC PN ++YN  +  +    ++D+AIE +  M  ++
Sbjct: 362 LINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM--VS 419

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS- 410
            G  P   +Y  ++ ALC+ G+V  A + L +L   G  P   TY  V D L+   +   
Sbjct: 420 RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTER 479

Query: 411 ---LLDDGLRKRIRDGI 424
              LLD+  RK ++  I
Sbjct: 480 AIKLLDEMRRKGLKPDI 496



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 141/290 (48%), Gaps = 39/290 (13%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           E TCKE G+    G  +K     L +M  +G+   V T +V  LI  + +EG ++EA+  
Sbjct: 259 EATCKESGV----GQAMK----LLDEMRNKGSKPDVVTYNV--LINGICKEGRLDEAIKF 308

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              M  + C+P+V  +N+++ ++C  G +  A  LL  M   G  C P V T+ ILI+  
Sbjct: 309 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG--CSPSVVTFNILINFL 366

Query: 252 CKYGM------------QTGCRK------------AIRRRIWEANHLFRLMLFKGFVPDV 287
           C+ G+              GC                 +++  A     +M+ +G  PD+
Sbjct: 367 CRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDI 426

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V YN L+   CK  +++ A+E+ + ++ KGC P  +TYN+ I   S V + ++AI+++ +
Sbjct: 427 VTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE 486

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           M+    G+ P   +Y+ ++  L   G+V EA  F  +L   G  P   TY
Sbjct: 487 MR--RKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITY 534



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 131/259 (50%), Gaps = 22/259 (8%)

Query: 150 GLW----DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           G W      L DM R+G    V T ++  LI  L  +GL+  A+    +M    C P+  
Sbjct: 335 GRWMDAEKLLSDMLRKGCSPSVVTFNI--LINFLCRQGLLGRAIDILEKMPMHGCTPNSL 392

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           +YN +++  C+    ++A   L+ M   G  C PD+ TY  L+++ CK G          
Sbjct: 393 SYNPLLHGFCKEKKMDRAIEYLDIMVSRG--CYPDIVTYNTLLTALCKDG---------- 440

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            ++  A  +   +  KG  P ++ YN +IDG  K  + ERA++L D+M +KG  P+ +TY
Sbjct: 441 -KVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITY 499

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           +S +   S   ++D+AI+    ++ L  G+ P + +Y  I+  LC++ +   A DFLA +
Sbjct: 500 SSLVSGLSREGKVDEAIKFFHDLEGL--GIRPNAITYNSIMLGLCKSRQTDRAIDFLAYM 557

Query: 385 VDGGSVPREYTYKLVCDAL 403
           +     P E TY ++ + +
Sbjct: 558 ISKRCKPTEATYTILIEGI 576



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 114/230 (49%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++ L + G + +A+    R  Q  C PDV  Y ++I A C+     +A  LL++M   G
Sbjct: 222 ILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKG 281

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PDV TY +LI+  CK G           R+ EA      M   G  P+V+ +N ++
Sbjct: 282 SK--PDVVTYNVLINGICKEG-----------RLDEAIKFLNNMPSYGCQPNVITHNIIL 328

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              C T R   A +L  DM +KGC P+ VT+N  I +      + +AI+++ KM    HG
Sbjct: 329 RSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPM--HG 386

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P S SY P++H  C+  ++  A ++L  +V  G  P   TY  +  AL
Sbjct: 387 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTAL 436



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R   ++  + FL+ M  RG  ++      T LI+     G   +A      ++Q    
Sbjct: 124 LVRNGELEDGFKFLESMVYRG--DIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAV 181

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  YNV+I+  C+ G  + A  +L++M +      PDV TY  ++ + C  G      
Sbjct: 182 PDVITYNVLISGYCKSGEIDNALQVLDRMNV-----APDVVTYNTILRTLCDSG------ 230

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ +A  +    L K   PDV+ Y  LI+  CK   + +A++L D+M  KG  P+
Sbjct: 231 -----KLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPD 285

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            VTYN  I        +D+AI+ +  M   ++G  P   ++  I+ ++C  GR ++A   
Sbjct: 286 VVTYNVLINGICKEGRLDEAIKFLNNMP--SYGCQPNVITHNIILRSMCSTGRWMDAEKL 343

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L++++  G  P   T+ ++ + L
Sbjct: 344 LSDMLRKGCSPSVVTFNILINFL 366


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 155/337 (45%), Gaps = 66/337 (19%)

Query: 152 WDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           +D   +M  +G + ++VT S++     +LG+   + +A+  F +M     +PDVY +N++
Sbjct: 245 FDLFSEMVSKGISPDVVTYSALISGFCILGK---LKDAIDLFNKMILENIKPDVYTFNIL 301

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC------------KYGMQT 258
           +NA C+ G   + + + + M   G +  P+  TY  L+  YC                Q 
Sbjct: 302 VNAFCKDGKMKEGKTVFDMMMKQGIK--PNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQG 359

Query: 259 GCRKAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           G    I+            ++  EA +LF+ M  K  +PDVV Y+ LIDG  K+ RI  A
Sbjct: 360 GVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYA 419

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
           L+L D M+ +G  PN  TYNS +      +++DKAI ++ K ++     P  S+Y+ +I 
Sbjct: 420 LQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQ-PDISTYSILIK 478

Query: 367 ALCEAGRVLEARD-----------------------------------FLAELVDGGSVP 391
            LC++G++ +AR                                     L+++ D G +P
Sbjct: 479 GLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIP 538

Query: 392 REYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRF 428
              TY+++  +L   +E  + +  LR+ I  G+   F
Sbjct: 539 DAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLNF 575



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 116/237 (48%), Gaps = 16/237 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L + G    AL    R+     +P+V  YN +I+++C+V   N+A  L  +M
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PDV TY+ LIS +C  G           ++ +A  LF  M+ +   PDV  +
Sbjct: 252 VSKGIS--PDVVTYSALISGFCILG-----------KLKDAIDLFNKMILENIKPDVYTF 298

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L++  CK  +++    +FD M K+G  PN VTYNS +  Y +V E++KA  +   M  
Sbjct: 299 NILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMA- 357

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
              GV P   SY+ +I+  C+  +  EA +   E+     +P   TY  + D L+ +
Sbjct: 358 -QGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKS 413



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 14/234 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + GL+  A + F ++ +    PD   +  +   LC  G   +A    +++   G
Sbjct: 126 LINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALG 185

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F    D  +Y  LI   CK G        ++R   + N +          P+VV YN +I
Sbjct: 186 FHF--DQISYGTLIHGLCKVGETRAALDLLQR--VDGNLV---------QPNVVMYNTII 232

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK   +  A +LF +M  KG  P+ VTY++ I  + ++ ++  AI++  KM  L + 
Sbjct: 233 DSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMI-LENI 291

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            P   ++  +++A C+ G++ E +     ++  G  P   TY  + D     +E
Sbjct: 292 KPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKE 345



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 111/244 (45%), Gaps = 29/244 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A++ F R+ +    P  + +N ++ +L +  +++   +L ++ME  G +  P++   
Sbjct: 66  VDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIK--PNLVNC 123

Query: 245 TILISSYCKYGM------------------QTGCRKAIRRRIWEANHLFRLMLFK----- 281
            ILI+ +C+ G+                   T     + + +     + +  LF      
Sbjct: 124 NILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVA 183

Query: 282 -GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            GF  D ++Y  LI G CK      AL+L   ++     PN V YN+ I     V  +++
Sbjct: 184 LGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNE 243

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A ++  +M  ++ G+ P   +Y+ +I   C  G++ +A D   +++     P  YT+ ++
Sbjct: 244 AFDLFSEM--VSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNIL 301

Query: 400 CDAL 403
            +A 
Sbjct: 302 VNAF 305


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 130/255 (50%), Gaps = 24/255 (9%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           + +DM +RG    +T ++   L+  L  +G  ++A A    M++    PDV+ YN++IN 
Sbjct: 241 YREDMVQRGVA--MTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILING 298

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+ GN  KA  + E+M   G R      TYT LI ++ + G           ++ E + 
Sbjct: 299 YCKEGNEKKALEVFEEMSRKGVRA--TAVTYTSLIYAFSRKG-----------QVQETDR 345

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF++ + KG  PDVV YN LI+  C    +ERA E+  +M KK   P+ VTYN+ IR + 
Sbjct: 346 LFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFC 405

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           ++  +D+A  ++ +M        T     P +  LC+ G+  +A + + E+V  G  P +
Sbjct: 406 LLGRLDEARGLIDEM--------TKRGIQPDL-GLCKNGQGDDAENLMKEMVGKGITPDD 456

Query: 394 YTYKLVCDALNAAEE 408
            TY  + + L   +E
Sbjct: 457 STYISLIEGLTTVDE 471



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 29/239 (12%)

Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
           A  YR++   C      +N+++  LC  G   +A  LL QM        P+  TY  +I+
Sbjct: 105 ADIYRLRLPLC---TTTFNIMLRHLCATGKPVRALELLRQMPR------PNAVTYNTVIA 155

Query: 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPDVVAYNCLIDGCCKTYRIERALE 308
            +C  G           R+  A  + R M  + G  PD   Y  LI G CK  R+E A +
Sbjct: 156 GFCARG-----------RVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAK 204

Query: 309 LFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIH 366
           +FD+M  +G + P+ V YN+ I  Y    ++D A++    M  +  GV  T ++Y  ++H
Sbjct: 205 VFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDM--VQRGVAMTVATYNLLVH 262

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIR 421
           AL   GR  +A   L E+   G  P  +TY ++    C   N  +   + ++  RK +R
Sbjct: 263 ALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVR 321



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 87/197 (44%), Gaps = 14/197 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           RP+   YN VI   C  G    A  ++ +M   G    PD YTY  LIS +CK G     
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERG-GIAPDKYTYATLISGWCKIG----- 197

Query: 261 RKAIRRRIWEANHLFRLMLFKGFV-PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                 R+ +A  +F  ML +G V P  V YN LI G C   +++ AL+  +DM ++G  
Sbjct: 198 ------RMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVA 251

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
               TYN  +    +      A  ++ +MQ  N   P   +Y  +I+  C+ G   +A +
Sbjct: 252 MTVATYNLLVHALFMDGRASDAYAVLEEMQR-NGLSPDVFTYNILINGYCKEGNEKKALE 310

Query: 380 FLAELVDGGSVPREYTY 396
              E+   G      TY
Sbjct: 311 VFEEMSRKGVRATAVTY 327


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 130/281 (46%), Gaps = 34/281 (12%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           +G G L T  + T LI  L   G   EA      MK     PD+ A++V+I+ +C+ G  
Sbjct: 258 KGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEV 317

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR--------------- 265
           ++AR +L+ M   G    PDV TY  L++ YC        RK                  
Sbjct: 318 SEARVILKTMTEMGVE--PDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFS 375

Query: 266 ---------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                    +RI EA  LF  M  +G +PD V+YN LI G C+  R   A ELF DM+  
Sbjct: 376 ILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSN 435

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVL 375
           G  PN VTY+  +   S    +D+A+ + R M+  N G+ P   +Y  +I  +C+ G+  
Sbjct: 436 GYPPNLVTYSILLDCLSKQGYLDQAMGLFRAME--NSGLKPDLVTYNIMIDGMCKYGKFK 493

Query: 376 EARDFLAELVDGGSVPREYTYKLVCD-ALNAAEEPSLLDDG 415
           +AR+  AEL   G  P  +    VC   ++   +  LLD+ 
Sbjct: 494 DARELFAELSVKGLQPNNW----VCTPTIDGVCKGGLLDEA 530



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 21/251 (8%)

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           EG +  A+  F  M     +P+V++Y+++I  LCRVG   +   LLE M++ G  C PDV
Sbjct: 174 EGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVG--CEPDV 231

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
             Y  ++   CK            R + EA H+F  M   G +P VV Y  LI G     
Sbjct: 232 VIYNTIVDRLCK-----------DRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLG 280

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
           R + A  L ++M     +P+ V ++  I       E+ +A  +++ M  +  GV P  ++
Sbjct: 281 RWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEM--GVEPDVAT 338

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGL 416
           Y  +++  C    V+EAR     ++  G +P  +++ ++    C A    E   L D+  
Sbjct: 339 YNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMT 398

Query: 417 -RKRIRDGIEY 426
            R  I D + Y
Sbjct: 399 HRGLIPDTVSY 409



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 121/290 (41%), Gaps = 58/290 (20%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S + +IK L   G   E +     MK   C PDV  YN +++ LC+    N+A  +  +M
Sbjct: 198 SYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKM 257

Query: 231 ---------------------------------ELPGFRCPPDVYTYTILISSYCKYGMQ 257
                                            E+ G    PD+  +++LI   CK G  
Sbjct: 258 KGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEV 317

Query: 258 TGCR------------------------KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           +  R                          +R  + EA  +F +M+ KG +PDV +++ L
Sbjct: 318 SEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSIL 377

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ++G CK  RI+ A +LFD+M  +G IP+ V+YN+ I          +A E+ + M + N 
Sbjct: 378 VNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHS-NG 436

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P   +Y+ ++  L + G + +A      + + G  P   TY ++ D +
Sbjct: 437 YPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGM 486



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 121/265 (45%), Gaps = 27/265 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +N+AL+ F  M      P +  +  + +AL R+ ++     L +QME+ G     DV + 
Sbjct: 72  INDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGI--SHDVLSL 129

Query: 245 TILISSYCK-----YG-------MQTGCRK------------AIRRRIWEANHLFRLMLF 280
           TILI+ +C+     YG       ++ G                I  +I  A  LF +M+ 
Sbjct: 130 TILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVA 189

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G+ P+V +Y+ +I G C+  +    ++L + M   GC P+ V YN+ +        +++
Sbjct: 190 RGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNE 249

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A+ +  KM+     +PT  +YT +IH L   GR  EA   L E+  G  +P    + ++ 
Sbjct: 250 AVHIFCKMKGTGI-LPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLI 308

Query: 401 DALNAAEEPSLLDDGLRKRIRDGIE 425
           D +    E S     L+     G+E
Sbjct: 309 DIMCKEGEVSEARVILKTMTEMGVE 333



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 14/226 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S+T LI        V+   +   ++ +    P+V  ++ +IN  C  G   +A  L + M
Sbjct: 128 SLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVM 187

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G++  P+V++Y+I+I   C+ G  T           E   L   M   G  PDVV Y
Sbjct: 188 VARGYK--PNVHSYSIIIKGLCRVGKTT-----------EVIKLLEHMKVVGCEPDVVIY 234

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N ++D  CK   +  A+ +F  M   G +P  VTY S I     +    +A  ++ +M+ 
Sbjct: 235 NTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKG 294

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            N  +P   +++ +I  +C+ G V EAR  L  + + G  P   TY
Sbjct: 295 GNI-MPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATY 339



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 24/188 (12%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R +  K L+D   +M+ RG   +  T S   LI  L +     EA   F  M      P+
Sbjct: 386 RIDEAKQLFD---EMTHRG--LIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPN 440

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +  Y+++++ L + G  ++A  L   ME  G +  PD+ TY I+I   CKYG        
Sbjct: 441 LVTYSILLDCLSKQGYLDQAMGLFRAMENSGLK--PDLVTYNIMIDGMCKYG-------- 490

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK------KG 317
              +  +A  LF  +  KG  P+       IDG CK   ++ A + F  M K      +G
Sbjct: 491 ---KFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQG 547

Query: 318 CIPNRVTY 325
           CI  R TY
Sbjct: 548 CINGRATY 555


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 169/392 (43%), Gaps = 34/392 (8%)

Query: 67  GRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTL-----GLNKATEFYHW 121
           G     R    +   I K+    +AN +L   P+    P  V       GL  A  +   
Sbjct: 281 GCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEA 340

Query: 122 VERFFDFFH-----NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLI 176
            E   + F      +++T   +   F +   V  + + L+ M   G    V T   T +I
Sbjct: 341 EELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVIT--YTTVI 398

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
               +EGL++EA+     M    C+P+  +Y +V+  LC  G +  A  L+ QM   G  
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG-- 456

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           CPP+  T+  LI+  CK G+           + +A  L + ML  G  PD+++Y+ +IDG
Sbjct: 457 CPPNPVTFNTLINFLCKKGL-----------VEQAIELLKQMLVNGCSPDLISYSTVIDG 505

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
             K  + E ALEL + M  KG  PN + Y+S     S    ++K I+M   +++      
Sbjct: 506 LGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIR-S 564

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            +  Y  +I +LC+      A DF A +V  G +P E TY ++   L +        +GL
Sbjct: 565 DAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLAS--------EGL 616

Query: 417 RKRIRDGIEYRFRQVMKVKPIMKHKELLKCGE 448
            K  ++ +     +    K +M+H  +  C +
Sbjct: 617 AKEAQELLSELCSRGALRKHLMRHFGISNCTQ 648



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 51/301 (16%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           +    G  + T +   ++  + E+G V+EA+    ++  F C  D+ +YN V+  LC   
Sbjct: 171 AMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAK 230

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
            +     L+++M      C P++ T+  LI   C+ G+          R+ E   +   M
Sbjct: 231 RWGDVEELMDEM--VRVDCAPNIVTFNTLIGYLCRNGL--------FERVHE---VLAQM 277

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIE---------------------------------- 304
              G  PD+  Y  +IDG CK   +E                                  
Sbjct: 278 SEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERW 337

Query: 305 -RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYT 362
             A EL  +M +K C  + VT+N  + ++     +D+ IE++ +M  L+HG +P   +YT
Sbjct: 338 KEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM--LSHGCMPDVITYT 395

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I+  C+ G + EA   L  +   G  P   +Y +V   L +A      ++ + + I+ 
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 423 G 423
           G
Sbjct: 456 G 456



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 16/234 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++ L   G + +AL     M    C P    Y+V++ A CR G F  +  +LE M   G
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  D     +++++ C+ G            + EA  L R + F G   D+V+YN ++
Sbjct: 177 --CTLDTGNCNLVLNAICEQGC-----------VDEAVGLLRKLAFFGCEADIVSYNAVL 223

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   R     EL D+M +  C PN VT+N+ I Y       ++  E++ +M    HG
Sbjct: 224 KGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS--EHG 281

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
             P    Y  II  +C+ G +  A + L  +   G  P    Y  V   L +AE
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+   +  ++ G C   RI  ALE+ D+M+ KGC P    Y+  +           ++ +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           +  M      + T +    +++A+CE G V EA   L +L   G      +Y  V   L 
Sbjct: 169 LEAMHAKGCTLDTGNCNL-VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLC 227

Query: 405 AAEEPSLLDDGLRKRIR 421
            A+    +++ + + +R
Sbjct: 228 MAKRWGDVEELMDEMVR 244


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 116/230 (50%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L +EG V E+      M +   +PDV  Y+++++  C VG   KA+ +   M   G
Sbjct: 226 LIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTG 285

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDVY+Y I+I+  CK            +R+ EA +L R ML K  +PD V Y+ LI
Sbjct: 286 VN--PDVYSYNIIINGLCK-----------GKRVDEAMNLLREMLHKNMIPDTVTYSSLI 332

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK  RI   L+L  +M+ +G   N VTYNS +        +DKAI +  KM+    G
Sbjct: 333 DGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMK--ERG 390

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + P   +YT +I  LC+ GR+ + +     L+  G     +TY ++   L
Sbjct: 391 IQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGL 440



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 16/204 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           RPDV  Y+ +I+ LC+    ++A  L  +M   G    PDV TYT LI  +C  G     
Sbjct: 147 RPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIF--PDVITYTTLICGFCLAG----- 199

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA  L   M+ K   P++  YN LID  CK  +++ +  L   M KKG  P
Sbjct: 200 ------QLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKP 253

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
           + V Y+  +  Y +V E+ KA ++   M  +  GV P   SY  II+ LC+  RV EA +
Sbjct: 254 DVVIYSILMDGYCLVGEVQKAKQIFLVM--VQTGVNPDVYSYNIIINGLCKGKRVDEAMN 311

Query: 380 FLAELVDGGSVPREYTYKLVCDAL 403
            L E++    +P   TY  + D L
Sbjct: 312 LLREMLHKNMIPDTVTYSSLIDGL 335



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 120/249 (48%), Gaps = 20/249 (8%)

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           K M  +G    + T S+  LI      G +  + +   ++ +   +P+    N ++  LC
Sbjct: 34  KQMEAKGIVPDLVTLSI--LINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLC 91

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
             G   K+    +++   GF+   D  +Y IL++  CK G +T C   + R I +     
Sbjct: 92  LKGEVKKSLHFHDKVVAQGFQM--DQVSYGILLNGLCKIG-ETRCAIKLLRTIED----- 143

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
                +   PDVV Y+ +IDG CK   ++ A +L+ +MN +G  P+ +TY + I  + + 
Sbjct: 144 -----RSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLA 198

Query: 336 NEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
            ++ +A  ++ +M  +N+N   P   +Y  +I  LC+ G+V E+++ LA +   G  P  
Sbjct: 199 GQLMEAFGLLNEMILKNIN---PNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDV 255

Query: 394 YTYKLVCDA 402
             Y ++ D 
Sbjct: 256 VIYSILMDG 264



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 15/207 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +G  V    + L++M  +    +  T + + LI  L + G +   L     M      
Sbjct: 300 LCKGKRVDEAMNLLREMLHKN--MIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQP 357

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            ++  YN +++ LC+  N +KA  L  +M+  G +  P+ YTYT LI   CK G      
Sbjct: 358 ANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQ--PNKYTYTALIDGLCKGG------ 409

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +   LF+ +L KG+  DV  Y  +I G CK    + AL +   M   GCIPN
Sbjct: 410 -----RLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPN 464

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            VT+   IR     +E DKA +++ +M
Sbjct: 465 AVTFEIIIRSLLEKDENDKAEKLLHEM 491



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 73/189 (38%), Gaps = 38/189 (20%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L + M  KG VPD+V  + LI+  C   ++  +  +   + K G  PN +  N+ ++   
Sbjct: 32  LSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLC 91

Query: 334 VVNEI-------DKAIEMMRKMQNLNHGV---------------------------PTSS 359
           +  E+       DK +    +M  +++G+                           P   
Sbjct: 92  LKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVV 151

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDG 415
            Y+ II  LC+   V EA D  +E+   G  P   TY  +    C A    E   LL++ 
Sbjct: 152 MYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEM 211

Query: 416 LRKRIRDGI 424
           + K I   I
Sbjct: 212 ILKNINPNI 220


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 125/257 (48%), Gaps = 17/257 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL-GEEGLVNEALATFYRMKQFR 199
           +    N+VK    F K+M  R  G   T  S+  LIK L   E  V  A   F  M    
Sbjct: 129 ILVEENHVKRAIGFYKEM--REKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRG 186

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C+PD Y Y  +IN LC++G  ++A+ LL++ME  G    P V +YT LI   C+      
Sbjct: 187 CQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGL--SPSVVSYTSLIHGLCQ------ 238

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   + EA  L   M+  G  P+V  Y+ L+DG CK+    +A+EL + M ++  +
Sbjct: 239 -----SNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLL 293

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN VTY++ I       +  +A+E++ +M+ L    P +  Y  II  LC A    EA +
Sbjct: 294 PNMVTYSTLINGLCKEGKHREAVEILDRMR-LQGLKPDAGMYGRIISGLCAACNYQEAAN 352

Query: 380 FLAELVDGGSVPREYTY 396
           F+ E+  GG  P   ++
Sbjct: 353 FIDEMALGGISPNRASW 369



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 13/217 (5%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           +A+  F++M+ F+ +P   +Y  V + L    +  +A    ++M   G   PP V +  I
Sbjct: 103 DAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGI--PPTVVSLNI 160

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI + CK              +  A  LFR M  +G  PD   Y  LI+G CK  +I +A
Sbjct: 161 LIKALCKN----------EETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQA 210

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
            EL D+M +KG  P+ V+Y S I      N +D+AIE++ +M  +N   P   +Y+ ++ 
Sbjct: 211 KELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMI-INGIEPNVFTYSSLMD 269

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            LC++G   +A + L  +V    +P   TY  + + L
Sbjct: 270 GLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGL 306



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 127/290 (43%), Gaps = 46/290 (15%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC---RPDVYAYNVVINALCRVGNFNKA 223
           +T S V  LIK    E  +N+ L  F    +      R D   +  +I+ L  V  F  A
Sbjct: 13  ITNSLVEQLIKA---EKDINKTLVMFDSATEEYSNGFRHDHNTFGAMIHRLVSVNQFRPA 69

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK-YGMQTGCRKAIR----------------- 265
             +LE+M+        DV+       + C+ YG       AIR                 
Sbjct: 70  EGMLERMKQEDCEVTEDVFL------TICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSY 123

Query: 266 ----RRIWEANHLFRLMLF------KGFVPDVVAYNCLIDGCCKTYR-IERALELFDDMN 314
                 + E NH+ R + F      KG  P VV+ N LI   CK    +E A  LF +M 
Sbjct: 124 LTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMP 183

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
            +GC P+  TY + I     + +I +A E++ +M+      P+  SYT +IH LC++  +
Sbjct: 184 NRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLS-PSVVSYTSLIHGLCQSNNL 242

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRKRI 420
            EA + L E++  G  P  +TY  + D L    ++++   LL+  +R+R+
Sbjct: 243 DEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRL 292


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 169/392 (43%), Gaps = 34/392 (8%)

Query: 67  GRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTL-----GLNKATEFYHW 121
           G     R    +   I K+    +AN +L   P+    P  V       GL  A  +   
Sbjct: 281 GCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEA 340

Query: 122 VERFFDFFH-----NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLI 176
            E   + F      +++T   +   F +   V  + + L+ M   G    V T   T +I
Sbjct: 341 EELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVIT--YTTVI 398

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
               +EGL++EA+     M    C+P+  +Y +V+  LC  G +  A  L+ QM   G  
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG-- 456

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           CPP+  T+  LI+  CK G+           + +A  L + ML  G  PD+++Y+ +IDG
Sbjct: 457 CPPNPVTFNTLINFLCKKGL-----------VEQAIELLKQMLVNGCSPDLISYSTVIDG 505

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
             K  + E ALEL + M  KG  PN + Y+S     S    ++K I+M   +++      
Sbjct: 506 LGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIR-S 564

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            +  Y  +I +LC+      A DF A +V  G +P E TY ++   L +        +GL
Sbjct: 565 DAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLAS--------EGL 616

Query: 417 RKRIRDGIEYRFRQVMKVKPIMKHKELLKCGE 448
            K  ++ +     +    K +M+H  +  C +
Sbjct: 617 AKEAQELLSELCSRGALRKHLMRHFGISNCTQ 648



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 51/301 (16%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           +    G  + T +   ++  + E+G V+EA+    ++  F C  D+ +YN V+  LC   
Sbjct: 171 AMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAK 230

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
            +     L+++M      C P++ T+  LI   C+ G+          R+ E   +   M
Sbjct: 231 RWGDVEELMDEM--VRVDCAPNIVTFNTLIGYLCRNGL--------FERVHE---VLAQM 277

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIE---------------------------------- 304
              G  PD+  Y  +IDG CK   +E                                  
Sbjct: 278 SEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERW 337

Query: 305 -RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYT 362
             A EL  +M +K C  + VT+N  + ++     +D+ IE++ +M  L+HG +P   +YT
Sbjct: 338 KEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM--LSHGCMPDVITYT 395

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I+  C+ G + EA   L  +   G  P   +Y +V   L +A      ++ + + I+ 
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 423 G 423
           G
Sbjct: 456 G 456



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 16/234 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++ L   G + +AL     M    C P    Y+V++ A CR G F  +  +LE M   G
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  D     +++++ C+ G            + EA  L R + F G   D+V+YN ++
Sbjct: 177 --CTLDTGNCNLVLNAICEQGC-----------VDEAVGLLRKLAFFGCEADIVSYNAVL 223

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   R     EL D+M +  C PN VT+N+ I Y       ++  E++ +M    HG
Sbjct: 224 KGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS--EHG 281

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
             P    Y  II  +C+ G +  A + L  +   G  P    Y  V   L +AE
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335



 Score = 41.2 bits (95), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+   +  ++ G C   RI  ALE+ D+M+ KGC P    Y+  +           ++ +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           +  M      + T +    +++A+CE G V EA   L +L   G      +Y  V   L 
Sbjct: 169 LEAMHAKGCTLDTGNC-NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLC 227

Query: 405 AAEEPSLLDDGLRKRIR 421
            A+    +++ + + +R
Sbjct: 228 MAKRWGDVEELMDEMVR 244


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 174/387 (44%), Gaps = 60/387 (15%)

Query: 22  MLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQS-PRSIGRQTGFRHRTPLRQ 80
           +L+N PFD  +   +    NP TI S+    +  P F+F S P S        + TP   
Sbjct: 17  LLRN-PFDP-MPKFSIHQLNPLTI-SLHKPARLSPFFYFSSLPLS-------SNSTP--- 63

Query: 81  RILKKEAYNIANNVLVLGPAAYRD-PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMG 139
                     A N L + P  ++  PQ  +  L  AT FY  +E       N  T +E  
Sbjct: 64  ---------DAQNELSISPQIFKSRPQFGSYKLGDAT-FYRLIE-------NYATSREFH 106

Query: 140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLI-KVLGEEGLVNEALATFYRM-KQ 197
            +             L  M R G    V T ++  LI K  G+  L  EA+  F+RM   
Sbjct: 107 FIH----------QVLDRMKREGR---VLTETIFILIFKACGKAHLPGEAVNFFHRMAND 153

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
             C+  V ++N V+N + + G+F+ A +F L           P++ TY ++I + CK G 
Sbjct: 154 LHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLG- 212

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                     +I  A   FR M  K   PDV  Y+ L++G CK  R++ A+ L D+M  +
Sbjct: 213 ----------QIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAE 262

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           GC+PN VT+N  I   S   ++ +A +++  M  L   VP   +Y  +IH LC  G++ +
Sbjct: 263 GCLPNPVTFNVLIDALSKNGDLSRAAKLVDNM-FLKGCVPNEVTYNTLIHGLCLKGKLDK 321

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A   L ++V    VP + TY  + + L
Sbjct: 322 ALSLLEKMVSSKCVPNQVTYGTIINGL 348



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 125/268 (46%), Gaps = 18/268 (6%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           MS    G+       + LI  L +EG    A+  +  M +  C+P+V  Y   I+ LCR 
Sbjct: 362 MSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRD 421

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
              ++A  +L++M   GF   P+ +TY+ L+  + K G     +KAI   +W+       
Sbjct: 422 EKPDEAEDILQEMLSKGFL--PNAFTYSSLMKGFFKKG---DSQKAIL--VWKE------ 468

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+ +    +VV  + L++G C++ R+  AL ++  M  +G  P+ V Y+S I+    V  
Sbjct: 469 MMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGS 528

Query: 338 IDKAIEMMRKMQ-NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +DK +++  +MQ       P   +Y  + +ALC    +  A D L  ++D G  P   T 
Sbjct: 529 VDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTC 588

Query: 397 KLVCDAL----NAAEEPSLLDDGLRKRI 420
            +  + L    N  ++  L  D L  R+
Sbjct: 589 NIFLETLRERINPPQDGRLFLDELVVRL 616



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 22/234 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  +G +++AL+   +M   +C P+   Y  +IN L +         +L  ME  G
Sbjct: 309 LIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERG 368

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +   + Y Y+ LIS   K G       A+R        L++ M  KG  P+VV Y   I
Sbjct: 369 QKA--NEYIYSSLISGLFKEGKS---ENAVR--------LWKEMAEKGCKPNVVVYGAFI 415

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLN 352
           DG C+  + + A ++  +M  KG +PN  TY+S ++ +    +  KAI + ++M  Q++ 
Sbjct: 416 DGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMR 475

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDA 402
           H V   S    +++ LCE+GR+ EA      ++  G  P    Y    K +CD 
Sbjct: 476 HNVVCCSV---LLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDV 526



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 15/178 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D L++M  +G   L    + + L+K   ++G   +A+  +  M     R +V   +V++N
Sbjct: 429 DILQEMLSKGF--LPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLN 486

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEA 271
            LC  G   +A  +   M   G +  PDV  Y+ +I   C  G +  G +     +  E 
Sbjct: 487 GLCESGRLREALTVWTHMLGEGLK--PDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEP 544

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
                        PDVV YN L +  C+   + RA++L + M  +GC P+ +T N F+
Sbjct: 545 KS----------RPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFL 592



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 14/154 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +G++ K +  + + MS+     +V  S    L+  L E G + EAL  +  M     +
Sbjct: 454 FKKGDSQKAILVWKEMMSQDMRHNVVCCS---VLLNGLCESGRLREALTVWTHMLGEGLK 510

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV AY+ +I  LC VG+ +K   L  +M+    +  PDV TY IL ++ C+   Q    
Sbjct: 511 PDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCR---QDNLT 567

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           +AI         L   ML +G  PD +  N  ++
Sbjct: 568 RAI--------DLLNSMLDEGCDPDSLTCNIFLE 593



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
           N KG  PN +TYN  I+    + +ID+A++  R+M  L +  P   +Y+ +++ LC+  R
Sbjct: 190 NSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMP-LKNCNPDVFTYSTLMNGLCKERR 248

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           V EA   L E+   G +P   T+ ++ DAL+
Sbjct: 249 VDEAVFLLDEMQAEGCLPNPVTFNVLIDALS 279


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 133/290 (45%), Gaps = 28/290 (9%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           GN ++   D  + ++ +G    V T ++  LI  L + G  + AL  F  MK   C PD 
Sbjct: 369 GNRLEEALDLARQVTVKGVSPDVYTFNI--LINALCKVGDPHLALRLFEEMKNSGCTPDE 426

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             YN +I+ LC +G   KA  LL+ ME  G  CP    TY  +I   CK           
Sbjct: 427 VTYNTLIDNLCSLGKLGKALDLLKDMESTG--CPRSTITYNTIIDGLCK----------- 473

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           + RI EA  +F  M  +G   + + +N LIDG CK  +I+ A EL + M  +G  PN +T
Sbjct: 474 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNIT 533

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YNS + +Y    +I KA +++  M      V    +Y  +I+ LC+AGR   A   L  +
Sbjct: 534 YNSILTHYCKQGDIKKAADILETMTANGFEVDV-VTYGTLINGLCKAGRTQVALKVLRGM 592

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKV 434
              G  P    Y  V  +L             R  IRD +   FR++ +V
Sbjct: 593 RIKGMRPTPKAYNPVLQSLFR-----------RNNIRDALSL-FREMAEV 630



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 121/260 (46%), Gaps = 16/260 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R + V+     L++MS RG     TT   T L++   EEG +  AL    RM +  C   
Sbjct: 193 RAHQVRTAVLMLEEMSSRGVAPDETT--FTTLMQGFVEEGSIEAALRVKARMLEMGCSAT 250

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
               NV+IN  C++G    A   ++Q    GF   PD  TY   ++  C+          
Sbjct: 251 KVTVNVLINGYCKLGRVEDALGYIQQEIADGFE--PDQITYNTFVNGLCQ---------- 298

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               +  A  +  +M+ +G  PDV  YN +++  CK  ++E A  + + M  +GC+P+  
Sbjct: 299 -NDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDIT 357

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           T+N+ I      N +++A+++ R++  +    P   ++  +I+ALC+ G    A     E
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQV-TVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 384 LVDGGSVPREYTYKLVCDAL 403
           + + G  P E TY  + D L
Sbjct: 417 MKNSGCTPDEVTYNTLIDNL 436



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 116/252 (46%), Gaps = 17/252 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D LKDM   G     +T +   +I  L ++  + EA   F +M       +   +N +I+
Sbjct: 447 DLLKDMESTGCPR--STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 504

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+    + A  L+ QM   G +  P+  TY  +++ YCK G            I +A 
Sbjct: 505 GLCKDKKIDDAFELINQMISEGLQ--PNNITYNSILTHYCKQG-----------DIKKAA 551

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +   M   GF  DVV Y  LI+G CK  R + AL++   M  KG  P    YN  ++  
Sbjct: 552 DILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 611

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR-VLEARDFLAELVDGGSVP 391
              N I  A+ + R+M  +    P + +Y  +   LC  G  + EA DF+ E+VD G +P
Sbjct: 612 FRRNNIRDALSLFREMAEVGEP-PDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIP 670

Query: 392 REYTYKLVCDAL 403
              +++++ + L
Sbjct: 671 EFSSFRMLAEGL 682



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 118/262 (45%), Gaps = 29/262 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+ VL E   +    + +  M     +PDV  +N ++ ALCR      A  +LE+M   G
Sbjct: 152 LLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRG 211

Query: 235 FRCPPDVYTYTILISSYCKYG------------MQTGCRKAIRR------------RIWE 270
               PD  T+T L+  + + G            ++ GC                  R+ +
Sbjct: 212 --VAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVED 269

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A    +  +  GF PD + YN  ++G C+   +  AL++ D M ++G  P+  TYN  + 
Sbjct: 270 ALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVN 329

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                 ++++A  ++ +M  ++ G +P  +++  +I ALC   R+ EA D   ++   G 
Sbjct: 330 CLCKNGQLEEAKGILNQM--VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGV 387

Query: 390 VPREYTYKLVCDALNAAEEPSL 411
            P  YT+ ++ +AL    +P L
Sbjct: 388 SPDVYTFNILINALCKVGDPHL 409



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 26/246 (10%)

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           ++N ALA       F   P+VY    +I  L  VG  +  + L+ +M   G +    V  
Sbjct: 60  MLNAALAR----DDFAPGPEVYEE--IIRKLGAVGALDLMKVLVAEMRREGHQVKLGV-V 112

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           ++ L S    Y  Q     A+   + +   LF      G   D V YN L++   +  ++
Sbjct: 113 HSFLDS----YEGQQLFDDAVDLILNQLQPLF------GIQADTVVYNHLLNVLVEGSKM 162

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYT 362
           +    ++ +M  +G  P+ VT+N+ ++     +++  A+ M+ +M   + GV P  +++T
Sbjct: 163 KLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS--SRGVAPDETTFT 220

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL---RKR 419
            ++    E G +  A    A +++ G    + T  ++   +N   +   ++D L   ++ 
Sbjct: 221 TLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVL---INGYCKLGRVEDALGYIQQE 277

Query: 420 IRDGIE 425
           I DG E
Sbjct: 278 IADGFE 283


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 123/243 (50%), Gaps = 16/243 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           F +DM   G  + V T ++  +I  + +EG +  A + F++MKQ    PD+  YN +I+ 
Sbjct: 239 FFRDMVGAGIAQSVFTYNI--MIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDG 296

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
             ++G  +++  L E+M+  G  C PDV TY  LI+ +CKY            ++ +A H
Sbjct: 297 YGKLGLLDESFCLFEEMKDVG--CEPDVITYNALINCFCKY-----------EQMPKAFH 343

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
               M   G  P+VV Y+ LID  CK + +++A++   DM + G  PN  TY S I    
Sbjct: 344 FLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANC 403

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
               +  A+++  +M  +  G     +YT ++  LC+ GR++EA D    ++  G  P  
Sbjct: 404 KAGYLSDALKLADEMLQVQVGF-NVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNL 462

Query: 394 YTY 396
            TY
Sbjct: 463 KTY 465



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 16/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L  V  E G++ EA   F RM +FR  P   + N  +  L + G  + +      M   G
Sbjct: 188 LFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAG 247

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                 V+TY I+I   CK G            +  A  LF  M   G  PD+V YN LI
Sbjct: 248 I--AQSVFTYNIMIGYMCKEG-----------DMVTAKSLFHQMKQMGLTPDIVTYNSLI 294

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K   ++ +  LF++M   GC P+ +TYN+ I  +    ++ KA   + +M+  N G
Sbjct: 295 DGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMK--NSG 352

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + P   +Y+ +I ALC+   + +A  FL ++   G  P E+TY  + DA
Sbjct: 353 LKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDA 401



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 139/330 (42%), Gaps = 76/330 (23%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  +V A     K L+  +K M      ++VT +S   LI   G+ GL++E+   F  
Sbjct: 263 CKEGDMVTA-----KSLFHQMKQMGL--TPDIVTYNS---LIDGYGKLGLLDESFCLFEE 312

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR------------------ 236
           MK   C PDV  YN +IN  C+     KA   L +M+  G +                  
Sbjct: 313 MKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHM 372

Query: 237 ---------------CPPDVYTYTILISSYCKYG--------------MQTG-------- 259
                            P+ +TYT LI + CK G              +Q G        
Sbjct: 373 LQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTT 432

Query: 260 -----CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                C++    R+ EA  LFR M+  G  P++  Y  L+ G  K  R+E ALEL  ++ 
Sbjct: 433 LLDGLCKEG---RMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIK 489

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGR 373
           +K   P+ + Y + I      N++++   +M +M+    G+  +S  YT  + A  + G+
Sbjct: 490 EKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKAC--GIRANSVIYTIRMDAYFKTGK 547

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +EA + L E+ D G      T+ ++ D L
Sbjct: 548 TVEALNLLQEMCDLGVEVTIVTFCVLIDGL 577



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 28/217 (12%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------ 255
           PD+  Y  +I  LC      +  F++ +M+  G R   +   YTI + +Y K G      
Sbjct: 495 PDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIR--ANSVIYTIRMDAYFKTGKTVEAL 552

Query: 256 --MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY-----------------NCLIDG 296
             +Q  C   +   I     L   +  KG V + + Y                   LIDG
Sbjct: 553 NLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDG 612

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            CK   IE A +LFD+M  K  +P+++ Y + I       +  +A+ +  +M  L   + 
Sbjct: 613 LCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELD 672

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
              +YT ++  L +   V +AR FL E++  G VP E
Sbjct: 673 L-HAYTSLVWGLSQGNLVQQARMFLNEMIGKGIVPDE 708



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           +N  FR M+  G    V  YN +I   CK   +  A  LF  M + G  P+ VTYNS I 
Sbjct: 236 SNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLID 295

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            Y  +  +D++  +  +M+++    P   +Y  +I+  C+  ++ +A  FL E+ + G  
Sbjct: 296 GYGKLGLLDESFCLFEEMKDVGCE-PDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLK 354

Query: 391 PREYTYKLVCDAL 403
           P   TY  + DAL
Sbjct: 355 PNVVTYSTLIDAL 367



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 17/208 (8%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M   F  G  V+ L + L++M   G    VT  +   LI  L ++GLV EA+  F RM  
Sbjct: 539 MDAYFKTGKTVEAL-NLLQEMCDLGVE--VTIVTFCVLIDGLCKKGLVEEAIDYFARMAD 595

Query: 198 FRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
           F  +P+ V     +I+ LC+      A+ L ++M+       PD   YT LI    K+  
Sbjct: 596 FNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNM--VPDKIAYTALIDGNLKH-- 651

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                    +   EA ++   M   G   D+ AY  L+ G  +   +++A    ++M  K
Sbjct: 652 ---------KDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGK 702

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           G +P+ +     +R Y  +  ID+AIE+
Sbjct: 703 GIVPDEILCIRLLRKYYELGSIDEAIEL 730


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 13/230 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME-LP 233
           +I+ L   G+++EA  TF  M      P    +N +I+A+C+         L ++M+ + 
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
            F CPP++ TY I++ + CK            +++ EA  L   M   G  PDVV Y+ L
Sbjct: 332 EFYCPPNLETYNIMVDNLCK-----------AKQLDEAQELVNEMANYGLSPDVVTYSAL 380

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +DG CK  +++RA +L ++M+K+G  P+  T  S +   S   ++D A+  +  M+    
Sbjct: 381 VDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKA-RG 439

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P   +Y  ++  LC+AGR+ EA  FLA++V     P  ++Y ++  AL
Sbjct: 440 STPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITAL 489



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 19/250 (7%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           L+D+L     R  G   +  +  C +  L +      A   F +M++    PD + Y++V
Sbjct: 24  LFDWLG----RQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIV 79

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           +  LC+ G  +KA+ LL Q+   G +   +V TY+++I   CK             R+ +
Sbjct: 80  LRGLCKAGELDKAKELLGQLRESGVKL--NVITYSVVIDGCCK-----------ASRVDD 126

Query: 271 ANHLFRLM-LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           A  +F+ M    G VPDVV +N L+ G C   R+  A  LF+ M K GC PN ++Y++ +
Sbjct: 127 ALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLL 186

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                   +D+A  +  +M      VP   +YT  +  LC+A RV EA D   ++V  GS
Sbjct: 187 DGLCKAGRLDEACRLWEEMVE-KSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGS 245

Query: 390 VPREYTYKLV 399
                 +  V
Sbjct: 246 KADAVAFSTV 255



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 129/267 (48%), Gaps = 17/267 (6%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
            + W+ R   + H+  T        A+ N  +  ++  + M RRG      T S+  +++
Sbjct: 24  LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSI--VLR 81

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
            L + G +++A     ++++   + +V  Y+VVI+  C+    + A  + + M   G  C
Sbjct: 82  GLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMS-AGGGC 140

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            PDV T+  L+   C              R+ EA  LF  M   G  P+V++Y+ L+DG 
Sbjct: 141 VPDVVTFNSLLKGLCS-----------GERMSEAFVLFEYMAKAGCEPNVISYSTLLDGL 189

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           CK  R++ A  L+++M +K C+P+ V Y SF+      N + +A +  RKM  +  G   
Sbjct: 190 CKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKM--VTKGSKA 247

Query: 358 SS-SYTPIIHALCEAGRVLEARDFLAE 383
            + +++ +I  LC+ G   EA++ + E
Sbjct: 248 DAVAFSTVIGILCKKGHAEEAQNQMIE 274



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 15/221 (6%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V+ YN  ++AL +      A    +QM+  G+  PPD +TY+I++   CK G        
Sbjct: 38  VFTYNCFLDALAKANAGQLAYEKFQQMQRRGY--PPDDFTYSIVLRGLCKAG-------- 87

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG-CIPNR 322
               + +A  L   +   G   +V+ Y+ +IDGCCK  R++ ALE+F  M+  G C+P+ 
Sbjct: 88  ---ELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDV 144

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           VT+NS ++       + +A  +   M       P   SY+ ++  LC+AGR+ EA     
Sbjct: 145 VTFNSLLKGLCSGERMSEAFVLFEYMAKAGCE-PNVISYSTLLDGLCKAGRLDEACRLWE 203

Query: 383 ELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           E+V+   VP    Y      L  A   +   D  RK +  G
Sbjct: 204 EMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKG 244



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 65/261 (24%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           MK+F C P++  YN++++ LC+    ++A+ L+ +M   G    PDV TY+ L+   CK 
Sbjct: 330 MKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGL--SPDVVTYSALVDGLCKL 387

Query: 255 G-MQTGCR-----------------KAIRRRIWEANHL------FRLMLFKGFVPDVVAY 290
           G +   C                   +I   + +A  +         M  +G  PD+V Y
Sbjct: 388 GKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTY 447

Query: 291 NCLIDGCCKTYRIERAL-----------------------------------ELFDDMNK 315
           N L+DG CK  RI+ A+                                    +F +M K
Sbjct: 448 NTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVK 507

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
           +G +P+ V Y+S +   +     D A+E+++     +   P    +  ++  LC+AG+  
Sbjct: 508 RGVLPDTVLYHSLLDGLARNGLEDLALELLKT----SLCKPDFVMHKMVVDGLCKAGKAE 563

Query: 376 EARDFLAELVDGGSVPREYTY 396
           +A + +  + D G     +TY
Sbjct: 564 DACEVVERMADAGFPADAFTY 584



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 20/206 (9%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNG-ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
             ++   V      L+ M  RG+  +LVT ++   L+  L + G ++EA+    +M   +
Sbjct: 418 ALSKAGKVDYALSHLETMKARGSTPDLVTYNT---LLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C PDV++Y ++I ALCR G    A  + ++M   G    PD   Y  L+    + G++  
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVL--PDTVLYHSLLDGLARNGLED- 531

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                      A  L +  L K   PD V +  ++DG CK  + E A E+ + M   G  
Sbjct: 532 ----------LALELLKTSLCK---PDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFP 578

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMM 345
            +  TY + +R    + ++DKA +++
Sbjct: 579 ADAFTYINVVRGLRKLGKVDKARQLV 604



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 86/232 (37%)

Query: 153 DFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           D L++MS+ G    V   S T   ++  L + G V+ AL+    MK     PD+  YN +
Sbjct: 395 DLLEEMSKEG----VFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTL 450

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           ++ LC+ G  ++A   L +M     +C PDV++YTI+I++ C+ G   G           
Sbjct: 451 LDGLCKAGRIDEAITFLAKM--VAAKCTPDVFSYTIIITALCRSGQAAG----------- 497

Query: 271 ANHLFRLMLFKGFVPDVVAYNCL--------------------------------IDGCC 298
           A+ +F+ M+ +G +PD V Y+ L                                +DG C
Sbjct: 498 AHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVDGLC 557

Query: 299 K------------------------TY-----------RIERALELFDDMNK 315
           K                        TY           ++++A +L DD ++
Sbjct: 558 KAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASE 609


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 125/247 (50%), Gaps = 19/247 (7%)

Query: 183 GLVNEALATFY-RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           G +NEA A  Y +M      PDV+ ++ ++N LC+ G F  A  L+  M+  G  C P++
Sbjct: 360 GRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKG--CKPNL 417

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            TYTILI  +CK G           ++ EA  + R ML KGF  + V YN LI   CK  
Sbjct: 418 NTYTILIDGFCKKG-----------QLEEAGLILREMLTKGFSLNTVGYNALISALCKHG 466

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
           +I  AL++F +M+ KGC P+  T+NS I     V+E++ A+ + R M  L   +  S ++
Sbjct: 467 KIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMV-LEGVIANSVTF 525

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLR 417
             +IHA    G + EA   + +++  G    E TY    K +C      +   L ++ +R
Sbjct: 526 NTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIR 585

Query: 418 KRIRDGI 424
           K +   I
Sbjct: 586 KGLTPSI 592



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 120/248 (48%), Gaps = 19/248 (7%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           L++M  +G    + T     LI  L + G ++EAL  F  M    C+PD++ +N +I  L
Sbjct: 440 LREMLTKGFS--LNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGL 497

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           CRV     A  L   M L G     +  T+  LI ++ +           R  I EA  L
Sbjct: 498 CRVDEMEDALALYRDMVLEGV--IANSVTFNTLIHAFLR-----------RGEIQEALKL 544

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
              MLF+G   D + YN LI   CKT  +E+ L LF++M +KG  P+ +T N  I  +  
Sbjct: 545 VNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCT 604

Query: 335 VNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             ++  A+E MR M  ++ G  P   +Y  +I+ LC+ GR+ EA +   +L   G  P  
Sbjct: 605 AGKVHNALEFMRDM--IHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDS 662

Query: 394 YTYK-LVC 400
            TY  L+C
Sbjct: 663 ITYNTLIC 670



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 117/245 (47%), Gaps = 16/245 (6%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG +    + + L+  L ++GL   AL     M    C+P++  Y ++I+  C+ G   +
Sbjct: 376 NGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEE 435

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  +L +M   GF    +   Y  LIS+ CK+G           +I EA  +F  M  KG
Sbjct: 436 AGLILREMLTKGFSL--NTVGYNALISALCKHG-----------KIHEALDMFGEMSSKG 482

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PD+  +N LI G C+   +E AL L+ DM  +G I N VT+N+ I  +    EI +A+
Sbjct: 483 CKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEAL 542

Query: 343 EMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           +++  M  L  G P    +Y  +I ALC+ G V +      E++  G  P   T  ++ +
Sbjct: 543 KLVNDM--LFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILIN 600

Query: 402 ALNAA 406
               A
Sbjct: 601 GFCTA 605



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%), Gaps = 23/242 (9%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+ A      M +  C P+   Y  +I+AL +    ++A  LLE+M L G  CPPDV T+
Sbjct: 226 VDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMG--CPPDVNTF 283

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             +I  +C+             R+ E   L   M+ KGF P+ + Y  L+ G CKT RI+
Sbjct: 284 NTVIYGFCRL-----------NRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRID 332

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  L   +      PN V +N+ +  +     +++A   +      N  VP   +++ +
Sbjct: 333 EAQALLSKVPG----PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTL 388

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLLDDGLRKRIR 421
           ++ LC+ G    A + + ++   G  P   TY ++ D        EE  L+   LR+ + 
Sbjct: 389 VNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLI---LREMLT 445

Query: 422 DG 423
            G
Sbjct: 446 KG 447



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 19/217 (8%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A   FY M      P+ Y + +V+ ALC V   + A  LL  M   G  C P+   Y  L
Sbjct: 194 ASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHG--CVPNSMIYQTL 251

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I +  K           R R+ EA  L   M   G  PDV  +N +I G C+  R+    
Sbjct: 252 IDALSK-----------RDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGA 300

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           +L D M  KG  PN +TY   +        ID+A  ++ K+       P    +  +++ 
Sbjct: 301 KLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPG-----PNVVHFNTLVNG 355

Query: 368 LCEAGRVLEARDFLAE-LVDGGSVPREYTYKLVCDAL 403
               GR+ EA  F+ + +++ G VP  +T+  + + L
Sbjct: 356 FVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGL 392



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 17/212 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNF-NKARFLLEQMEL 232
           ++K  G  GL  +A      MK  + C P   +YNVV++ L  VGN  + A  +   M  
Sbjct: 145 IMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLV-VGNCPSVASNVFYDMLS 203

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P+ YT+ +++ + C           +   +  A  L R M   G VP+ + Y  
Sbjct: 204 KGV--SPNDYTFGLVMKALC-----------MVNEVDNACLLLRDMTKHGCVPNSMIYQT 250

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LID   K  R++ AL+L ++M   GC P+  T+N+ I  +  +N + +  +++ +M  L 
Sbjct: 251 LIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMI-LK 309

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
              P   +Y  ++H LC+  R+ EA+  L+++
Sbjct: 310 GFTPNDMTYGYLMHGLCKTCRIDEAQALLSKV 341


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 133/290 (45%), Gaps = 28/290 (9%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           GN ++   D  + ++ +G    V T ++  LI  L + G  + AL  F  MK   C PD 
Sbjct: 277 GNRLEEALDLARQVTVKGVSPDVYTFNI--LINALCKVGDPHLALRLFEEMKNSGCTPDE 334

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             YN +I+ LC +G   KA  LL+ ME  G  CP    TY  +I   CK           
Sbjct: 335 VTYNTLIDNLCSLGKLGKALDLLKDMESTG--CPRSTITYNTIIDGLCK----------- 381

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           + RI EA  +F  M  +G   + + +N LIDG CK  +I+ A EL + M  +G  PN +T
Sbjct: 382 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNIT 441

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YNS + +Y    +I KA +++  M      V    +Y  +I+ LC+AGR   A   L  +
Sbjct: 442 YNSILTHYCKQGDIKKAADILETMTANGFEVDV-VTYGTLINGLCKAGRTQVALKVLRGM 500

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKV 434
              G  P    Y  V  +L             R  IRD +   FR++ +V
Sbjct: 501 RIKGMRPTPKAYNPVLQSLFR-----------RNNIRDALSL-FREMAEV 538



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 121/260 (46%), Gaps = 16/260 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R + V+     L++MS RG     TT   T L++   EEG +  AL    RM +  C   
Sbjct: 101 RAHQVRTAVLMLEEMSSRGVAPDETT--FTTLMQGFVEEGSIEAALRVKARMLEMGCSAT 158

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
               NV+IN  C++G    A   ++Q    GF   PD  TY   ++  C+          
Sbjct: 159 KVTVNVLINGYCKLGRVEDALGYIQQEIADGFE--PDQITYNTFVNGLCQ---------- 206

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               +  A  +  +M+ +G  PDV  YN +++  CK  ++E A  + + M  +GC+P+  
Sbjct: 207 -NDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDIT 265

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           T+N+ I      N +++A+++ R++  +    P   ++  +I+ALC+ G    A     E
Sbjct: 266 TFNTLIAALCTGNRLEEALDLARQV-TVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 324

Query: 384 LVDGGSVPREYTYKLVCDAL 403
           + + G  P E TY  + D L
Sbjct: 325 MKNSGCTPDEVTYNTLIDNL 344



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 116/253 (45%), Gaps = 17/253 (6%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
            D LKDM   G     +T +   +I  L ++  + EA   F +M       +   +N +I
Sbjct: 354 LDLLKDMESTGCPR--STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLI 411

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + LC+    + A  L+ QM   G +  P+  TY  +++ YCK G            I +A
Sbjct: 412 DGLCKDKKIDDAFELINQMISEGLQ--PNNITYNSILTHYCKQG-----------DIKKA 458

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +   M   GF  DVV Y  LI+G CK  R + AL++   M  KG  P    YN  ++ 
Sbjct: 459 ADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQS 518

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR-VLEARDFLAELVDGGSV 390
               N I  A+ + R+M  +    P + +Y  +   LC  G  + EA DF+ E+VD G +
Sbjct: 519 LFRRNNIRDALSLFREMAEVGEP-PDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFI 577

Query: 391 PREYTYKLVCDAL 403
           P   +++++ + L
Sbjct: 578 PEFSSFRMLAEGL 590



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 118/262 (45%), Gaps = 29/262 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+ VL E   +    + +  M     +PDV  +N ++ ALCR      A  +LE+M   G
Sbjct: 60  LLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRG 119

Query: 235 FRCPPDVYTYTILISSYCKYG------------MQTGCRKAIRR------------RIWE 270
               PD  T+T L+  + + G            ++ GC                  R+ +
Sbjct: 120 V--APDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVED 177

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A    +  +  GF PD + YN  ++G C+   +  AL++ D M ++G  P+  TYN  + 
Sbjct: 178 ALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVN 237

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                 ++++A  ++ +M  ++ G +P  +++  +I ALC   R+ EA D   ++   G 
Sbjct: 238 CLCKNGQLEEAKGILNQM--VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGV 295

Query: 390 VPREYTYKLVCDALNAAEEPSL 411
            P  YT+ ++ +AL    +P L
Sbjct: 296 SPDVYTFNILINALCKVGDPHL 317



 Score = 45.4 bits (106), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 72/148 (48%), Gaps = 9/148 (6%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G   D V YN L++   +  +++    ++ +M  +G  P+ VT+N+ ++     +++  A
Sbjct: 49  GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 108

Query: 342 IEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           + M+ +M   + GV P  +++T ++    E G +  A    A +++ G    + T  ++ 
Sbjct: 109 VLMLEEMS--SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVL- 165

Query: 401 DALNAAEEPSLLDDGL---RKRIRDGIE 425
             +N   +   ++D L   ++ I DG E
Sbjct: 166 --INGYCKLGRVEDALGYIQQEIADGFE 191


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 133/290 (45%), Gaps = 28/290 (9%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           GN ++   D  + ++ +G    V T ++  LI  L + G  + AL  F  MK   C PD 
Sbjct: 369 GNRLEEALDLARQVTVKGVSPDVYTFNI--LINALCKVGDPHLALRLFEEMKNSGCTPDE 426

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             YN +I+ LC +G   KA  LL+ ME  G  CP    TY  +I   CK           
Sbjct: 427 VTYNTLIDNLCSLGKLGKALDLLKDMESTG--CPRSTITYNTIIDGLCK----------- 473

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           + RI EA  +F  M  +G   + + +N LIDG CK  +I+ A EL + M  +G  PN +T
Sbjct: 474 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNIT 533

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YNS + +Y    +I KA +++  M      V    +Y  +I+ LC+AGR   A   L  +
Sbjct: 534 YNSILTHYCKQGDIKKAADILETMTANGFEVDV-VTYGTLINGLCKAGRTQVALKVLRGM 592

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKV 434
              G  P    Y  V  +L             R  IRD +   FR++ +V
Sbjct: 593 RIKGMRPTPKAYNPVLQSLFR-----------RNNIRDALSL-FREMAEV 630



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 121/260 (46%), Gaps = 16/260 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R + V+     L++MS RG     TT   T L++   EEG +  AL    RM +  C   
Sbjct: 193 RAHQVRTAVIMLEEMSSRGVAPDETT--FTTLMQGFVEEGSIEAALRVKARMLEMGCSAT 250

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
               NV+IN  C++G    A   ++Q    GF   PD  TY   ++  C+          
Sbjct: 251 KVTVNVLINGYCKLGRVEDALGYIQQEIADGFE--PDQITYNTFVNGLCQ---------- 298

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               +  A  +  +M+ +G  PDV  YN +++  CK  ++E A  + + M  +GC+P+  
Sbjct: 299 -NDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDIT 357

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           T+N+ I      N +++A+++ R++  +    P   ++  +I+ALC+ G    A     E
Sbjct: 358 TFNTLIAALCTGNRLEEALDLARQV-TVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 384 LVDGGSVPREYTYKLVCDAL 403
           + + G  P E TY  + D L
Sbjct: 417 MKNSGCTPDEVTYNTLIDNL 436



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 116/252 (46%), Gaps = 17/252 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D LKDM   G     +T +   +I  L ++  + EA   F +M       +   +N +I+
Sbjct: 447 DLLKDMESTGCPR--STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 504

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+    + A  L+ QM   G +  P+  TY  +++ YCK G            I +A 
Sbjct: 505 GLCKDKKIDDAFELINQMISEGLQ--PNNITYNSILTHYCKQG-----------DIKKAA 551

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +   M   GF  DVV Y  LI+G CK  R + AL++   M  KG  P    YN  ++  
Sbjct: 552 DILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 611

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR-VLEARDFLAELVDGGSVP 391
              N I  A+ + R+M  +    P + +Y  +   LC  G  + EA DF+ E+VD G +P
Sbjct: 612 FRRNNIRDALSLFREMAEVGEP-PDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIP 670

Query: 392 REYTYKLVCDAL 403
              +++++ + L
Sbjct: 671 EFSSFRMLAEGL 682



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 118/262 (45%), Gaps = 29/262 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+ VL E   +    + +  M     +PDV  +N ++ ALCR      A  +LE+M   G
Sbjct: 152 LLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRG 211

Query: 235 FRCPPDVYTYTILISSYCKYG------------MQTGCRKAIRR------------RIWE 270
               PD  T+T L+  + + G            ++ GC                  R+ +
Sbjct: 212 --VAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVED 269

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A    +  +  GF PD + YN  ++G C+   +  AL++ D M ++G  P+  TYN  + 
Sbjct: 270 ALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVN 329

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                 ++++A  ++ +M  ++ G +P  +++  +I ALC   R+ EA D   ++   G 
Sbjct: 330 CLCKNGQLEEAKGILNQM--VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGV 387

Query: 390 VPREYTYKLVCDALNAAEEPSL 411
            P  YT+ ++ +AL    +P L
Sbjct: 388 SPDVYTFNILINALCKVGDPHL 409



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 26/246 (10%)

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           ++N ALA       F   P+VY    +I  L  VG  +  + L+ +M   G +    V  
Sbjct: 60  MLNAALAR----DDFAPGPEVYEE--IIRKLGAVGALDLMKVLVAEMRREGHQVKLGV-V 112

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           ++ L S    Y  Q     A+   + +   LF      G   D V YN L++   +  ++
Sbjct: 113 HSFLDS----YEGQQLFDDAVDLILNQLQPLF------GIQADTVVYNHLLNVLVEGSKM 162

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYT 362
           +    ++ +M  +G  P+ VT+N+ ++     +++  A+ M+ +M   + GV P  +++T
Sbjct: 163 KLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMS--SRGVAPDETTFT 220

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL---RKR 419
            ++    E G +  A    A +++ G    + T  ++   +N   +   ++D L   ++ 
Sbjct: 221 TLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVL---INGYCKLGRVEDALGYIQQE 277

Query: 420 IRDGIE 425
           I DG E
Sbjct: 278 IADGFE 283


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 22/246 (8%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           S+   LIK L   G V E    F +M +     +V +YN+VI+  C+    +KA    ++
Sbjct: 428 STYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKE 487

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M+  G   PP++ T+  LI  YCK G            I ++  L  ++L  GF PD+  
Sbjct: 488 MQYKGI--PPNLVTFNTLIDGYCKGG-----------EICKSRDLLVMLLEHGFKPDIFT 534

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           ++ +IDG C+  +IE AL  F +M   G  PN VTYN  I    ++ ++ ++++++RKMQ
Sbjct: 535 FSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQ 594

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDA-- 402
               G+ P   S+  +I + C  G+V +A+   + ++  G +P  YTY    K+ C +  
Sbjct: 595 --TDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGR 652

Query: 403 LNAAEE 408
            N A+E
Sbjct: 653 FNEAKE 658



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 49/203 (24%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PD++ ++ +I+ LCR      A     +M + G    P+  TY ILI S C  G     
Sbjct: 529 KPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLS--PNAVTYNILIHSLCIIG----- 581

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  +  +  L R M   G  PDV ++N LI   C+  ++E A +LF  M   G IP
Sbjct: 582 ------DVPRSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIP 635

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +  TY +FI+ +                                    C++GR  EA++ 
Sbjct: 636 DNYTYVAFIKVF------------------------------------CQSGRFNEAKEL 659

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
              +   G +P  +T  ++ DAL
Sbjct: 660 FLSMEANGCMPDSFTCNIILDAL 682



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 18/216 (8%)

Query: 117 EFYHWVERFFDFFHNEMTCKEM--GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           +FY WV      F  + + K +    ++ +G  V  + + LKD+  + +G  +    +  
Sbjct: 131 KFYIWVSNMDPLFAKDQSVKGVLANCLYRKGPVVLSV-ELLKDI--KASGYRINEELLCI 187

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI   G  GL       F ++      P    YN VI+AL +  + + A    +QM    
Sbjct: 188 LIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSAD- 246

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD +TY ILI   C+ G+           + EA  L + M   G+ P+V  Y  LI
Sbjct: 247 -NCKPDRFTYNILIHGVCRSGV-----------VDEALRLVKQMEGLGYSPNVFTYTILI 294

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           DG     +++ A  + + M  +   P+  T  SFI 
Sbjct: 295 DGFFNAKKVDEAFRVLETMKARKVSPSEATIRSFIH 330



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 115/257 (44%), Gaps = 14/257 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           +T     +I  L +   ++ A   F +M    C+PD + YN++I+ +CR G  ++A  L+
Sbjct: 216 STRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLV 275

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           +QME  G+   P+V+TYTILI  +              +++ EA  +   M  +   P  
Sbjct: 276 KQMEGLGYS--PNVFTYTILIDGFFN-----------AKKVDEAFRVLETMKARKVSPSE 322

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
                 I G  +     +A EL  +  ++  +  R+  ++ +   S  N   +A  +++K
Sbjct: 323 ATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQRLACDTLLCCLSSKNMAREAGALLKK 382

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
              + H  P S+++   ++ L +   + E  + L   V+ G      TY  +  AL  A 
Sbjct: 383 FGKIGHK-PDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYMAG 441

Query: 408 EPSLLDDGLRKRIRDGI 424
           + +  +    + ++DG+
Sbjct: 442 KVTEGNHYFNQMVKDGL 458



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 14/189 (7%)

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
           V+ N L R G    +  LL+ ++  G+R   ++    ILI S+ + G+   C        
Sbjct: 152 VLANCLYRKGPVVLSVELLKDIKASGYRINEELLC--ILIGSWGRLGLAKYC-------- 201

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
              + +F  + F G  P    YN +ID   K+  ++ A   F  M+   C P+R TYN  
Sbjct: 202 ---DEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNIL 258

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           I        +D+A+ ++++M+ L +  P   +YT +I     A +V EA   L  +    
Sbjct: 259 IHGVCRSGVVDEALRLVKQMEGLGYS-PNVFTYTILIDGFFNAKKVDEAFRVLETMKARK 317

Query: 389 SVPREYTYK 397
             P E T +
Sbjct: 318 VSPSEATIR 326



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI+     G V +A   F  M      PD Y Y   I   C+ G FN+A+ L   M
Sbjct: 604 SFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAKELFLSM 663

Query: 231 ELPGFRCPPDVYTYTILISSYCK 253
           E  G  C PD +T  I++ +  K
Sbjct: 664 EANG--CMPDSFTCNIILDALVK 684


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 128/257 (49%), Gaps = 20/257 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+   +E  V +A+     M+    +PDV  YNV+IN +C+ G  ++A   L  M  
Sbjct: 198 TILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNM-- 255

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
           P + C P+V T+ I++ S C  G           R  +A  L   ML KG  P VV +N 
Sbjct: 256 PSYGCQPNVITHNIILRSMCSTG-----------RWMDAEKLLSDMLRKGCSPSVVTFNI 304

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI+  C+   + RA+++ + M   GC PN ++YN  +  +    ++D+AIE +  M  ++
Sbjct: 305 LINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIM--VS 362

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS- 410
            G  P   +Y  ++ ALC+ G+V  A + L +L   G  P   TY  V D L+   +   
Sbjct: 363 RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTER 422

Query: 411 ---LLDDGLRKRIRDGI 424
              LLD+  RK ++  I
Sbjct: 423 AIKLLDEMRRKGLKPDI 439



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 141/290 (48%), Gaps = 39/290 (13%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           E TCKE G+    G  +K     L +M  +G+   V T +V  LI  + +EG ++EA+  
Sbjct: 202 EATCKESGV----GQAMK----LLDEMRNKGSKPDVVTYNV--LINGICKEGRLDEAIKF 251

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              M  + C+P+V  +N+++ ++C  G +  A  LL  M   G  C P V T+ ILI+  
Sbjct: 252 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG--CSPSVVTFNILINFL 309

Query: 252 CKYGM------------QTGCRK------------AIRRRIWEANHLFRLMLFKGFVPDV 287
           C+ G+              GC                 +++  A     +M+ +G  PD+
Sbjct: 310 CRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDI 369

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V YN L+   CK  +++ A+E+ + ++ KGC P  +TYN+ I   S V + ++AI+++ +
Sbjct: 370 VTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDE 429

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           M+    G+ P   +Y+ ++  L   G+V EA  F  +L   G  P   TY
Sbjct: 430 MR--RKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITY 477



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 131/259 (50%), Gaps = 22/259 (8%)

Query: 150 GLW----DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           G W      L DM R+G    V T ++  LI  L  +GL+  A+    +M    C P+  
Sbjct: 278 GRWMDAEKLLSDMLRKGCSPSVVTFNI--LINFLCRQGLLGRAIDILEKMPMHGCTPNSL 335

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           +YN +++  C+    ++A   L+ M   G  C PD+ TY  L+++ CK G          
Sbjct: 336 SYNPLLHGFCKEKKMDRAIEYLDIMVSRG--CYPDIVTYNTLLTALCKDG---------- 383

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            ++  A  +   +  KG  P ++ YN +IDG  K  + ERA++L D+M +KG  P+ +TY
Sbjct: 384 -KVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITY 442

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           +S +   S   ++D+AI+    ++ L  G+ P + +Y  I+  LC++ +   A DFLA +
Sbjct: 443 SSLVSGLSREGKVDEAIKFFHDLEGL--GIRPNAITYNSIMLGLCKSRQTDRAIDFLAYM 500

Query: 385 VDGGSVPREYTYKLVCDAL 403
           +     P E TY ++ + +
Sbjct: 501 ISKRCKPTEATYTILIEGI 519



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 114/230 (49%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++ L + G + +A+    R  Q  C PDV  Y ++I A C+     +A  LL++M   G
Sbjct: 165 ILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKG 224

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PDV TY +LI+  CK G           R+ EA      M   G  P+V+ +N ++
Sbjct: 225 SK--PDVVTYNVLINGICKEG-----------RLDEAIKFLNNMPSYGCQPNVITHNIIL 271

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              C T R   A +L  DM +KGC P+ VT+N  I +      + +AI+++ KM    HG
Sbjct: 272 RSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPM--HG 329

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P S SY P++H  C+  ++  A ++L  +V  G  P   TY  +  AL
Sbjct: 330 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTAL 379



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R   ++  + FL+ M  RG  ++      T LI+     G   +A      ++Q    
Sbjct: 67  LVRNGELEDGFKFLESMVYRG--DIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAV 124

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  YNV+I+  C+ G  + A  +L++M +      PDV TY  ++ + C  G      
Sbjct: 125 PDVITYNVLISGYCKSGEIDNALQVLDRMNV-----APDVVTYNTILRTLCDSG------ 173

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ +A  +    L K   PDV+ Y  LI+  CK   + +A++L D+M  KG  P+
Sbjct: 174 -----KLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPD 228

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            VTYN  I        +D+AI+ +  M   ++G  P   ++  I+ ++C  GR ++A   
Sbjct: 229 VVTYNVLINGICKEGRLDEAIKFLNNMP--SYGCQPNVITHNIILRSMCSTGRWMDAEKL 286

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L++++  G  P   T+ ++ + L
Sbjct: 287 LSDMLRKGCSPSVVTFNILINFL 309


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 16/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L +EG V EA +    M +   +PDV  Y+ +++    V    KA+ +   M L G
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDV+TYTILI+ +CK  M           + EA +LF+ M  K  VP +V Y+ LI
Sbjct: 335 V--TPDVHTYTILINGFCKNKM-----------VDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+ RI    +L D+M+ +G   N +TY+S I        +D+AI +  KM+  + G
Sbjct: 382 DGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMK--DQG 439

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + P + ++T ++  LC+ GR+ +A++   +L+  G     YTY ++ D 
Sbjct: 440 IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDG 488



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 20/228 (8%)

Query: 201  RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
             PD   +  +IN LC  G  NKA    +++   GF+   +  +Y  LI+  CK G     
Sbjct: 993  HPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQL--NQVSYGTLINGVCKIG---DT 1047

Query: 261  RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
            R AI+        L R +  +   PDVV YN +ID  CK   + +A  LF +MN KG   
Sbjct: 1048 RAAIK--------LLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISA 1099

Query: 321  NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVL--E 376
            + VTYN+ I  + +V ++ +AI ++ KM  + +N   P   +Y  ++ ALC+ G+ L  E
Sbjct: 1100 DVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTIN---PNVRTYNILVDALCKEGKDLLDE 1156

Query: 377  ARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
            +   L+++ D G      T++++  AL   +E   ++  L + I  G+
Sbjct: 1157 SLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 14/233 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  + + G    A+    ++     +P+V  Y+ +I+ALC+    ++A  L  +M
Sbjct: 166 SYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEM 225

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G     DV TY+ LI  +C           I  ++ EA  L   M+ K   P+V  Y
Sbjct: 226 TVKGISA--DVVTYSTLIYGFC-----------IEGKLKEAIGLLNEMVLKTINPNVYTY 272

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L+D  CK  +++ A  +   M K    P+ +TY++ +  Y +V E+ KA  +   M +
Sbjct: 273 NILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAM-S 331

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           L    P   +YT +I+  C+   V EA +   E+     VP   TY  + D L
Sbjct: 332 LMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 14/196 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    +  +V+EAL  F  M Q    P +  Y+ +I+ LC+ G       L+++M  
Sbjct: 343 TILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHD 402

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G   P +V TY+ LI   CK G            +  A  LF  M  +G  P+   +  
Sbjct: 403 RG--QPANVITYSSLIDGLCKNG-----------HLDRAIALFNKMKDQGIRPNTFTFTI 449

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG CK  R++ A E+F D+  KG   N  TYN  I  +     +++A+ M+ KM++ N
Sbjct: 450 LLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMED-N 508

Query: 353 HGVPTSSSYTPIIHAL 368
             +P + ++  II AL
Sbjct: 509 GCIPDAVTFEIIIIAL 524



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 14/212 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A++ F RM   R  P +  +N ++++  ++ +++ A  L  ++EL G +  PD+ T 
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQ--PDLITL 97

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI+ +C  G  T     + +           +L +G+ PD V  N LI G C   +++
Sbjct: 98  NILINCFCHMGQITFGFSVLAK-----------ILKRGYPPDTVTLNTLIKGLCLKGQVK 146

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +AL   D +  +G   N+V+Y + I     + +   AI++++K+       P    Y+ I
Sbjct: 147 KALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDG-RLTKPNVVMYSTI 205

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           I ALC+   V EA    +E+   G      TY
Sbjct: 206 IDALCKYQLVSEAYGLFSEMTVKGISADVVTY 237



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 15/144 (10%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           +WD + +M  RG    V T S   LI  L + G ++ A+A F +MK    RP+ + + ++
Sbjct: 393 VWDLIDEMHDRGQPANVITYS--SLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTIL 450

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           ++ LC+ G    A+ + + +   G+    +VYTY ++I  +CK G+           + E
Sbjct: 451 LDGLCKGGRLKDAQEVFQDLLTKGYHL--NVYTYNVMIDGHCKQGL-----------LEE 497

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLI 294
           A  +   M   G +PD V +  +I
Sbjct: 498 ALTMLSKMEDNGCIPDAVTFEIII 521



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 48/232 (20%)

Query: 219  NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
            +++ A  L  ++EL G +  PD++T  ILI+ +C  G Q     +I  +I          
Sbjct: 941  HYSTAVSLSHRLELKGIQ--PDLFTLNILINCFCHMG-QITFNFSILAKI---------- 987

Query: 279  LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
            L +G+ PD + +  LI+G C   ++ +AL   D +  +G   N+V+Y + I     + + 
Sbjct: 988  LKRGYHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDT 1047

Query: 339  DKAIEMMRKMQ----------------------------------NLNHGVPTSSSYTPI 364
              AI+++RK+                                   N+        +Y  +
Sbjct: 1048 RAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTL 1107

Query: 365  IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            I+  C  G++ EA   L ++V     P   TY ++ DAL   E   LLD+ L
Sbjct: 1108 IYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDAL-CKEGKDLLDESL 1158



 Score = 38.9 bits (89), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 183  GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN--FNKARFLLEQMELPGFRCPPD 240
            G + EA+    +M      P+V  YN++++ALC+ G    +++  +L +ME  G  C  +
Sbjct: 1115 GKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNG--CKAN 1172

Query: 241  VYTYTILISS 250
              T+ I+IS+
Sbjct: 1173 AVTFEIIISA 1182


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 134/278 (48%), Gaps = 25/278 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + LI +  +EG V EA      M +    P+V  Y+ ++N         +AR L + M
Sbjct: 334 TFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVM 393

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G  C PDV++Y ILI+ YCK            +RI EA  LF  M+ +G  PD+V+Y
Sbjct: 394 ITKG--CKPDVFSYNILINGYCK-----------AKRIGEAKQLFNEMIHQGLTPDIVSY 440

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LIDG C+  R+  A +LF +M   G +P+  TY+  +  +     + KA  + R MQ+
Sbjct: 441 NTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQS 500

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
             +  P    Y  +I A+C++  + EAR   +EL   G  P    Y  +   +N   +  
Sbjct: 501 -TYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTI---INGLCKEG 556

Query: 411 LLDDGL---RKRIRDGI---EYRFRQVMKVKPIMKHKE 442
           LLD+ L   R    DG    E+ +  +  ++  ++HK+
Sbjct: 557 LLDEALEAFRNMEEDGCPPNEFSYNVI--IRGFLQHKD 592



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 14/240 (5%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T ++  LI    +   V+   +   ++ +   +  +  +N +IN LC+VG F +A  L +
Sbjct: 157 TYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFD 216

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M   G++  PDV+TYT +I+  CK G               A  LFR M   G  PDVV
Sbjct: 217 DMVARGYQ--PDVHTYTTIINGLCKIG-----------ETVAAAGLFRKMGEAGCQPDVV 263

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y+ +ID  CK  R+  AL++F  M  KG  PN  TYNS I+     +   +A  M+ +M
Sbjct: 264 TYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM 323

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            +LN  +P   +++ +I+  C+ G V EAR  L  + + G  P   TY  + +  +   E
Sbjct: 324 MSLNI-MPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAE 382



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 118/260 (45%), Gaps = 20/260 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  +T  +   LI  L + G   +A+  F  M     +PDV+ Y  +IN LC++G    A
Sbjct: 187 GLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAA 246

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L  +M   G  C PDV TY+ +I S CK            RR+ EA  +F  M  KG 
Sbjct: 247 AGLFRKMGEAG--CQPDVVTYSTIIDSLCK-----------DRRVNEALDIFSYMKAKGI 293

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P++  YN LI G C   R   A  + ++M     +PN VT++  I  +     + +A  
Sbjct: 294 SPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARG 353

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV--- 399
           +++ M  +  GV P   +Y+ +++       V+EAR     ++  G  P  ++Y ++   
Sbjct: 354 VLKTMTEM--GVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILING 411

Query: 400 -CDALNAAEEPSLLDDGLRK 418
            C A    E   L ++ + +
Sbjct: 412 YCKAKRIGEAKQLFNEMIHQ 431



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 26/189 (13%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA   F  M      PD+ +YN +I+ LC++G   +A  L + M   G    PD+ TY
Sbjct: 418 IGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNG--NLPDLCTY 475

Query: 245 TILISSYCKYGMQTGCRKAIR------------------------RRIWEANHLFRLMLF 280
           +IL+  +CK G      +  R                        R + EA  LF  +  
Sbjct: 476 SILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFV 535

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G  P+V  Y  +I+G CK   ++ ALE F +M + GC PN  +YN  IR +    +  +
Sbjct: 536 QGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESR 595

Query: 341 AIEMMRKMQ 349
           A++++ +M+
Sbjct: 596 AVQLIGEMR 604



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 15/172 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D  K+M   GN   + T S+  L+    ++G + +A   F  M+    +P++  YN++I+
Sbjct: 458 DLFKNMLTNGNLPDLCTYSI--LLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILID 515

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           A+C+  N  +AR L  ++ + G +  P+V  YT +I+  CK G+           + EA 
Sbjct: 516 AMCKSRNLKEARKLFSELFVQGLQ--PNVQIYTTIINGLCKEGL-----------LDEAL 562

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             FR M   G  P+  +YN +I G  +     RA++L  +M +KG + +  T
Sbjct: 563 EAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 36/165 (21%)

Query: 274 LFRLMLFKGFVPDVVAY-----------------------------------NCLIDGCC 298
           L + M   G  PD                                       N LI+G C
Sbjct: 144 LSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLC 203

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K  +  +A+ELFDDM  +G  P+  TY + I     + E   A  + RKM       P  
Sbjct: 204 KVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQ-PDV 262

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +Y+ II +LC+  RV EA D  + +   G  P  +TY  +   L
Sbjct: 263 VTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGL 307


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 141/303 (46%), Gaps = 24/303 (7%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL-VTTSSV 172
           KA EF++W  R   F H+  +   M  +  R  N+    +FL  + RR NG + +     
Sbjct: 42  KAFEFFNWASRN-GFAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIEDRFC 100

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             L++  G  GL NEA+  F  MK     P V  +N ++  L + G  N A  + ++M  
Sbjct: 101 NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEM-C 159

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
             +   PD YT+ ILI  +CK  M           + E    F+ M      PDVV YN 
Sbjct: 160 GTYGVTPDTYTFNILIRGFCKNSM-----------VDEGFRFFKEMSRFNCEPDVVTYNT 208

Query: 293 LIDGCCKTYRIERALELFDDMNK--KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           L+DG C+  ++  A  +   M K  K   P+ VTY + +R Y +  EID+A+ +  +M  
Sbjct: 209 LVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEM-- 266

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDG-GSVPREYTYKLV----CDALN 404
           ++ G+ P   +Y  +I  LCE  +  + ++ L   V G G VP   TY  +    CDA N
Sbjct: 267 VSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGN 326

Query: 405 AAE 407
             E
Sbjct: 327 FDE 329



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 110/263 (41%), Gaps = 53/263 (20%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI+   +  +V+E    F  M +F C PDV  YN +++ LCR G    A  +++
Sbjct: 168 TYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVK 227

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M        PDV TYT L+  YC           +++ I EA  +F  M+ +G  P+ +
Sbjct: 228 GMVKKMKDLSPDVVTYTTLVRGYC-----------MKQEIDEALVVFEEMVSRGLKPNDI 276

Query: 289 AYNCLIDGCCKTYRIERALELFDD-MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
            YN LI G C+  + ++  E+    +  +G +P+  TYN+ +         D+A++M +K
Sbjct: 277 TYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKK 336

Query: 348 MQNL-----------------------------------------NHGVPTSSSYTPIIH 366
           M+ L                                         +   P  ++Y PI  
Sbjct: 337 MKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFD 396

Query: 367 ALCEAGRVLEARDFLAELVDGGS 389
            LC+ G+  +A     +L+  G+
Sbjct: 397 FLCKNGKTHKAERVFRQLMKKGT 419



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 18/230 (7%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G +  T +   L+    + G  +EAL  F +MK+ + +PD   Y+V+I  LC+ G+F 
Sbjct: 304 GRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFE 363

Query: 222 KARFLLEQME-----LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
           +A  L +++      L    C P V  Y  +    CK G           +  +A  +FR
Sbjct: 364 RAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNG-----------KTHKAERVFR 412

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            ++ KG   D  +Y  LI G CK    E   +L   M ++  +P+  TY   I  +    
Sbjct: 413 QLMKKG-TQDPPSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKG 471

Query: 337 EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           E   A + + +M   ++ +P +S +  I+  L +     E+  F+  ++D
Sbjct: 472 EPILAYKTLERMLKSSY-LPKTSVFHSILSELLKNDFARESASFVVLMID 520


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/264 (32%), Positives = 123/264 (46%), Gaps = 27/264 (10%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L  T++   LI  L  +  + EAL     +      PDVY +N++INALC+VG+ +  
Sbjct: 367 GCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLG 426

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG-----------MQT-GCRKAI------- 264
             L E+M+  G  C PD  TY ILI   C  G           M++ GC ++        
Sbjct: 427 IRLFEEMKSSG--CTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTII 484

Query: 265 -----RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                + RI EA  +F  M  +G     V +N LIDG CK  RI+ A EL + M K+G  
Sbjct: 485 DALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQ 544

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN +TYNS + +Y     I KA +++  M      +    +Y  +I+ LC+AGR   A  
Sbjct: 545 PNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDV-VTYGTLINGLCKAGRTQVALK 603

Query: 380 FLAELVDGGSVPREYTYKLVCDAL 403
            L  +   G  P    Y  V  +L
Sbjct: 604 LLRGMRIKGIRPTPKAYNPVIQSL 627



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 129/292 (44%), Gaps = 30/292 (10%)

Query: 124 RFFDFFHNEMTCKEMGI------------VFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           +  +  +NEMT +  GI               R + V+     L++MS  G     TT  
Sbjct: 179 KLLESVYNEMTGR--GIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETT-- 234

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
            T L++   EEG +  AL    +M +  C P     NV+IN  C++G    A   ++Q  
Sbjct: 235 FTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEI 294

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             GF   PD  TY   +   C+ G            +  A  +  LML +G  PDV  YN
Sbjct: 295 ADGFE--PDQVTYNTFVHGLCQNG-----------HVSHALKVMDLMLQEGHDPDVFTYN 341

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +I+   K   ++ A  + + M  +GC+P+  T+N+ I   S  N +++A+++ R++  +
Sbjct: 342 TVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLAREL-TV 400

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
               P   ++  +I+ALC+ G          E+   G  P E TY ++ D L
Sbjct: 401 KGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHL 452



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 117/253 (46%), Gaps = 17/253 (6%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
            D L +M    NG   +T +   +I  L ++  + EA   F +M           +N +I
Sbjct: 462 LDLLNEM--ESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLI 519

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + LC+    + A  L+EQM   G +  P+  TY  +++ YCK G            I +A
Sbjct: 520 DGLCKAKRIDDATELIEQMVKEGLQ--PNNITYNSILTHYCKQG-----------NIKKA 566

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +   M   GF  DVV Y  LI+G CK  R + AL+L   M  KG  P    YN  I+ 
Sbjct: 567 ADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQS 626

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR-VLEARDFLAELVDGGSV 390
               N +  A+ + R+M  +    P + +Y  +  +LC  G  + EA DFL E+V+ G +
Sbjct: 627 LFRRNNLRDALNLFREMTEVGEP-PDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFM 685

Query: 391 PREYTYKLVCDAL 403
           P   +++++ + L
Sbjct: 686 PEFSSFRMLAEGL 698



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 118/262 (45%), Gaps = 29/262 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+ VL E   +    + +  M     +PDV   N +I ALCR      A  +LE+M   G
Sbjct: 168 LLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHG 227

Query: 235 FRCPPDVYTYTILISSYCKYG------------MQTGCRKA------------IRRRIWE 270
               PD  T+T L+  + + G            M+ GC                  R+ +
Sbjct: 228 --VAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVED 285

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A    +  +  GF PD V YN  + G C+   +  AL++ D M ++G  P+  TYN+ I 
Sbjct: 286 ALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVIN 345

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             S   E+D+A  ++ +M  ++ G +P ++++  +I AL    R+ EA D   EL   G 
Sbjct: 346 CLSKNGELDEAKGIVNQM--VDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGL 403

Query: 390 VPREYTYKLVCDALNAAEEPSL 411
            P  YT+ ++ +AL    +P L
Sbjct: 404 SPDVYTFNILINALCKVGDPHL 425


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 115/222 (51%), Gaps = 20/222 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+K L ++GLV +AL     M +  C PD++ YN+V+N LC++G  + A  +L      G
Sbjct: 397 LVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKG 456

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD++T+  LI  YCK           +R + +A  +   ML  G  PDV+ YN L+
Sbjct: 457 --CIPDIFTFNTLIDGYCK-----------QRNMDKAIEILDTMLSHGITPDVITYNTLL 503

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G CK  +++  ++ F  M +KGC PN +TYN  I  +    ++ +A+E+ ++M+     
Sbjct: 504 NGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL- 562

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            P   +   +I  LC  G + +A +         ++ +EY +
Sbjct: 563 TPDIVTLCTLICGLCSNGELDKAYELFV------TIEKEYKF 598



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 156/334 (46%), Gaps = 30/334 (8%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A + ++ V+    F H   T K M          + + D L +M +  + +++    +  
Sbjct: 23  ALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIG- 81

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++  G +G V EA+  F RM  + C P V +YN ++N L   G F++A  +  +M+  G
Sbjct: 82  IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141

Query: 235 FRCPPDVYTYTILISSYCKYGMQT------------GCR------KAIRRRIW------E 270
               PDVYT+TI + S+C  G  T            GC        A+    +      E
Sbjct: 142 IY--PDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIE 199

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A HLF  ML +G  PD++ +N LI   CK   ++ + +LF  + K+G  PN  T+N FI+
Sbjct: 200 AYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQ 259

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                  ID+A  ++  +  ++ G+ P   SY  +I   C+  +++EA  +L ++V+ G 
Sbjct: 260 GLCRKGAIDEAARLLESI--VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGV 317

Query: 390 VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
            P E+TY  + +    A      D  LR  +  G
Sbjct: 318 EPNEFTYNTIINGFCKAGMMQNADKILRDAMFKG 351



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 29/242 (11%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EA    ++M      P+ + YN +IN  C+ G    A  +L      GF   PD +TY+ 
Sbjct: 304 EAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGF--IPDEFTYSS 361

Query: 247 LISSYCKYG------------MQTGCRKAI------------RRRIWEANHLFRLMLFKG 282
           LI+  C  G            M+ G + +I            +  + +A  L + M+  G
Sbjct: 362 LINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHG 421

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PD+  YN +++G CK   +  A  + +D   KGCIP+  T+N+ I  Y     +DKAI
Sbjct: 422 CSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAI 481

Query: 343 EMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           E++  M  L+HG+ P   +Y  +++ LC+A ++    D    +++ G  P   TY ++ +
Sbjct: 482 EILDTM--LSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIE 539

Query: 402 AL 403
           + 
Sbjct: 540 SF 541



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 124/253 (49%), Gaps = 29/253 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI VL ++G V E+   F ++ +    P+++ +N+ I  LCR G  ++A  LLE +   G
Sbjct: 222 LIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEG 281

Query: 235 FRCPPDVYTYTILISSYCKYG--MQTGC--RKAIRRRI--------------------WE 270
               PDV +Y  LI  +CK+   ++  C   K +   +                      
Sbjct: 282 L--TPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQN 339

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A+ + R  +FKGF+PD   Y+ LI+G C    + RA+ +F +  +KG   + + YN+ ++
Sbjct: 340 ADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVK 399

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             S    + +A+++M+ M  + HG  P   +Y  +++ LC+ G + +A   L + +  G 
Sbjct: 400 GLSKQGLVLQALQLMKDM--MEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGC 457

Query: 390 VPREYTYKLVCDA 402
           +P  +T+  + D 
Sbjct: 458 IPDIFTFNTLIDG 470



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 109/263 (41%), Gaps = 22/263 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +   +  + D  K M  +G    + T ++  LI+   ++  V+EA+  F  MK     
Sbjct: 506 LCKARKLDNVVDTFKAMLEKGCTPNIITYNI--LIESFCKDRKVSEAMELFKEMKTRGLT 563

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+     +I  LC  G  +KA  L   +E   ++       + I+I+++C+        
Sbjct: 564 PDIVTLCTLICGLCSNGELDKAYELFVTIE-KEYKFSYSTAIFNIMINAFCE-------- 614

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              +  +  A  LF  M      PD   Y  +ID  CKT  I+ A     +   KG +P+
Sbjct: 615 ---KLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPS 671

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG-RVLEARDF 380
             T    +    V + + +A+ ++  M   N  VP        ++++ EA  + + A   
Sbjct: 672 FTTCGKVLNCLCVTHRLSEAVVIINLMVQ-NGIVPEE------VNSIFEADKKEVAAPKI 724

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           + E +   S    Y+Y+L+ D +
Sbjct: 725 VVEYLLKKSHITYYSYELLYDGI 747


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 135/270 (50%), Gaps = 31/270 (11%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  +V   +D   +M  +G    V T S   LI      G + +A+  F +M     +PD
Sbjct: 209 KDKHVNDAFDLYSEMVSKGISPNVVTYS--ALISGFFTVGQLKDAIDLFNKMILENIKPD 266

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK---------- 253
           VY +N++++  C+ G   + + +   M   G +  P+V TY  L+  YC           
Sbjct: 267 VYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIK--PNVVTYCSLMDGYCLVKEVNKAKSI 324

Query: 254 -YGM-QTGCRKAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
            Y M Q G    I+            +++ EA +LF+ M  K  +PDVV YN LIDG CK
Sbjct: 325 LYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCK 384

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTS 358
             +I  AL+L D+M+ +G  P+ +TY+S +      +++DKAI ++ K++  + G+ P  
Sbjct: 385 LGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLK--DQGIRPNM 442

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            +YT +I  LC+ GR+ +A +   +L+  G
Sbjct: 443 YTYTILIDGLCKGGRLEDAHNIFEDLLVKG 472



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 125/249 (50%), Gaps = 16/249 (6%)

Query: 157 DMSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           D+ RR +G LV  + V  + +I  + ++  VN+A   +  M      P+V  Y+ +I+  
Sbjct: 183 DLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 242

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
             VG    A  L  +M L   +  PDVYT+ IL+  +CK G           ++ E   +
Sbjct: 243 FTVGQLKDAIDLFNKMILENIK--PDVYTFNILVDGFCKDG-----------KMKEGKTV 289

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           F +M+ +G  P+VV Y  L+DG C    + +A  +   M+++G  P+  +YN  I  +  
Sbjct: 290 FAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCK 349

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
           + ++D+A+ + ++M +  H +P   +Y  +I  LC+ G++  A   + E+ D G  P   
Sbjct: 350 IKKVDEAMNLFKEMHH-KHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDII 408

Query: 395 TYKLVCDAL 403
           TY  + DAL
Sbjct: 409 TYSSILDAL 417



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 109/230 (47%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G    AL    R+     +P+V  Y+ +I+ +C+  + N A  L  +M   G
Sbjct: 168 LIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKG 227

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V TY+ LIS +   G           ++ +A  LF  M+ +   PDV  +N L+
Sbjct: 228 IS--PNVVTYSALISGFFTVG-----------QLKDAIDLFNKMILENIKPDVYTFNILV 274

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK  +++    +F  M K+G  PN VTY S +  Y +V E++KA  ++  M     G
Sbjct: 275 DGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMS--QRG 332

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           V P   SY  +I   C+  +V EA +   E+     +P   TY  + D L
Sbjct: 333 VNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGL 382



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 94/184 (51%), Gaps = 17/184 (9%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           ++VT +S   LI  L + G ++ AL     M      PD+  Y+ +++ALC+    +KA 
Sbjct: 371 DVVTYNS---LIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAI 427

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            LL +++  G R  P++YTYTILI   CK G           R+ +A+++F  +L KG+ 
Sbjct: 428 ALLTKLKDQGIR--PNMYTYTILIDGLCKGG-----------RLEDAHNIFEDLLVKGYN 474

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
             V  Y  +I G C     + AL L   M    CIP+ VTY   IR     +E DKA E 
Sbjct: 475 ITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKA-EK 533

Query: 345 MRKM 348
           +R+M
Sbjct: 534 LREM 537



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 16/216 (7%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           L  MS+RG    + + ++  LI    +   V+EA+  F  M      PDV  YN +I+ L
Sbjct: 325 LYTMSQRGVNPDIQSYNI--LIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGL 382

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           C++G  + A  L+++M   G   PPD+ TY+ ++ + CK             ++ +A  L
Sbjct: 383 CKLGKISYALKLVDEMHDRG--VPPDIITYSSILDALCK-----------NHQVDKAIAL 429

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
              +  +G  P++  Y  LIDG CK  R+E A  +F+D+  KG      TY   I  +  
Sbjct: 430 LTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCN 489

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
               D+A+ ++ KM++ N  +P + +Y  II +L +
Sbjct: 490 KGLFDEALALLSKMKD-NSCIPDAVTYEIIIRSLFD 524



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 107/273 (39%), Gaps = 61/273 (22%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG-------FRC 237
           V +A + F R+ +    P    +N ++ +L +  +++    L +QME  G       F+ 
Sbjct: 57  VVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQH 116

Query: 238 P-------PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           P       P+  T+T LI   C           ++ +I +A      ++  GF  D V Y
Sbjct: 117 PHQLMGYHPNTITFTTLIKGLC-----------LKGQIHQALLFHDNVVAMGFQLDQVGY 165

Query: 291 NCLI-----------------------------------DGCCKTYRIERALELFDDMNK 315
             LI                                   DG CK   +  A +L+ +M  
Sbjct: 166 GTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVS 225

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
           KG  PN VTY++ I  +  V ++  AI++  KM  L +  P   ++  ++   C+ G++ 
Sbjct: 226 KGISPNVVTYSALISGFFTVGQLKDAIDLFNKMI-LENIKPDVYTFNILVDGFCKDGKMK 284

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           E +   A ++  G  P   TY  + D     +E
Sbjct: 285 EGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKE 317



 Score = 41.6 bits (96), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +G  ++   +  +D+  +G    +T ++ T +I     +GL +EALA   +MK   C PD
Sbjct: 454 KGGRLEDAHNIFEDLLVKGYN--ITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPD 511

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQM 230
              Y ++I +L      +KA  L E +
Sbjct: 512 AVTYEIIIRSLFDKDENDKAEKLREMI 538


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 13/230 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME-LP 233
           +I+ L   G+++EA  TF  M      P    +N +I+A+C+         L ++M+ + 
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
            F CPP++ TY I++ + CK            +++ EA  L   M   G  PDVV Y+ L
Sbjct: 332 EFYCPPNLETYNIMVDNLCK-----------AKQLDEAQELVNEMANYGLSPDVVTYSAL 380

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +DG CK  +++RA +L ++M+K+G  P+  T  S +   S   ++D A+  +  M+    
Sbjct: 381 VDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKA-RG 439

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P   +Y  ++  LC+AGR+ EA  FLA++V     P  ++Y ++  AL
Sbjct: 440 STPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITAL 489



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 19/250 (7%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           L+D+L     R  G   +  +  C +  L +      A   F +M++    PD + Y++V
Sbjct: 24  LFDWLG----RQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIV 79

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           +  LC+ G  +KA+ LL Q+   G +   +V TY+++I   CK             R+ +
Sbjct: 80  LRGLCKAGELDKAKELLGQLRESGVKL--NVITYSVVIDGCCK-----------ASRVDD 126

Query: 271 ANHLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           A  +F+ M   G  VPDVV +N L+ G C   R+  A  LF+ M K GC PN ++Y++ +
Sbjct: 127 ALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLL 186

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                   +D+A  +  +M      VP   +YT  +  LC+A RV EA D   ++V  GS
Sbjct: 187 DGLCKAGRLDEACRLWEEMVE-KSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGS 245

Query: 390 VPREYTYKLV 399
                 +  V
Sbjct: 246 KADAVAFSTV 255



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 129/267 (48%), Gaps = 17/267 (6%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
            + W+ R   + H+  T        A+ N  +  ++  + M RRG      T S+  +++
Sbjct: 24  LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSI--VLR 81

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
            L + G +++A     ++++   + +V  Y+VVI+  C+    + A  + + M   G  C
Sbjct: 82  GLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMS-SGGGC 140

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            PDV T+  L+   C              R+ EA  LF  M   G  P+V++Y+ L+DG 
Sbjct: 141 VPDVVTFNSLLKGLCS-----------GERMSEAFVLFEYMAKAGCEPNVISYSTLLDGL 189

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           CK  R++ A  L+++M +K C+P+ V Y SF+      N + +A +  RKM  +  G   
Sbjct: 190 CKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKM--VTKGSKA 247

Query: 358 SS-SYTPIIHALCEAGRVLEARDFLAE 383
            + +++ +I  LC+ G   EA++ + E
Sbjct: 248 DAVAFSTVIGILCKKGHAEEAQNQMIE 274



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 15/221 (6%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V+ YN  ++AL +      A    +QM+  G+  PPD +TY+I++   CK G        
Sbjct: 38  VFTYNCFLDALAKANAGQLAYEKFQQMQRRGY--PPDDFTYSIVLRGLCKAG-------- 87

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG-CIPNR 322
               + +A  L   +   G   +V+ Y+ +IDGCCK  R++ ALE+F  M+  G C+P+ 
Sbjct: 88  ---ELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDV 144

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           VT+NS ++       + +A  +   M       P   SY+ ++  LC+AGR+ EA     
Sbjct: 145 VTFNSLLKGLCSGERMSEAFVLFEYMAKAGCE-PNVISYSTLLDGLCKAGRLDEACRLWE 203

Query: 383 ELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           E+V+   VP    Y      L  A   +   D  RK +  G
Sbjct: 204 EMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKG 244



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 111/268 (41%), Gaps = 65/268 (24%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           MK+F C P++  YN++++ LC+    ++A+ L+ +M   G    PDV TY+ L+   CK 
Sbjct: 330 MKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGL--SPDVVTYSALVDGLCKL 387

Query: 255 G-MQTGCR-----------------KAIRRRIWEANHL------FRLMLFKGFVPDVVAY 290
           G +   C                   +I   + +A  +         M  +G  PD+V Y
Sbjct: 388 GKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTY 447

Query: 291 NCLIDGCCKTYRIERAL-----------------------------------ELFDDMNK 315
           N L+DG CK  RI+ A+                                    +F +M K
Sbjct: 448 NTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVK 507

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
           +G +P+ V Y+S +   +     D A+E+++     +   P    +  ++  LC+AG+  
Sbjct: 508 RGVLPDTVLYHSLLDGLARNGLEDLALELLKT----SLCKPDFVMHKMVLDGLCKAGKAE 563

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           +A + +  + D G     +TY  V   L
Sbjct: 564 DACEVVERMADAGFPADAFTYISVVSGL 591



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 20/206 (9%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNG-ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
             ++   V      L+ M  RG+  +LVT ++   L+  L + G ++EA+    +M   +
Sbjct: 418 ALSKAGKVDYALSHLETMKARGSTPDLVTYNT---LLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C PDV++Y ++I ALCR G    A  + ++M   G    PD   Y  L+    + G++  
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVL--PDTVLYHSLLDGLARNGLED- 531

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                      A  L +  L K   PD V +  ++DG CK  + E A E+ + M   G  
Sbjct: 532 ----------LALELLKTSLCK---PDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFP 578

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMM 345
            +  TY S +     + ++DKA +++
Sbjct: 579 ADAFTYISVVSGLRKLGKVDKARQLV 604



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 64/221 (28%)

Query: 153 DFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           D L++MS+ G    V   S T   ++  L + G V+ AL+    MK     PD+  YN +
Sbjct: 395 DLLEEMSKEG----VFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTL 450

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC----RKAIRR 266
           ++ LC+ G  ++A   L +M     +C PDV++YTI+I++ C+ G   G     ++ ++R
Sbjct: 451 LDGLCKAGRIDEAITFLAKM--VAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKR 508

Query: 267 RIWEANHLFR---------------LMLFKGFV--PDVVAYNCLIDGCCK---------- 299
            +     L+                L L K  +  PD V +  ++DG CK          
Sbjct: 509 GVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEV 568

Query: 300 --------------TY-----------RIERALELFDDMNK 315
                         TY           ++++A +L DD ++
Sbjct: 569 VERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASE 609


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 179/418 (42%), Gaps = 94/418 (22%)

Query: 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLW---------DFLKDMSRR 161
           GL K  EF   VE F D       C+    V+     + GL            LK M   
Sbjct: 172 GLCKVGEFAQAVELFDDMVAK--GCQP--DVYTYNTIINGLCKIGETAAAAGLLKKMEEA 227

Query: 162 G-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           G    +VT S+   LI  L  + LVNEAL  F  MK     PD++ Y  +I  LC+   +
Sbjct: 228 GCQPNMVTYST---LIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRW 284

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT---GCRKAIRR----------- 266
            +A  LL   E+      PD+ T+ +L+ ++CK G  +   G  K +             
Sbjct: 285 KEASALLN--EMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYS 342

Query: 267 ------RIW----EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                  +W    EA  LF +M+ KG  P++ +YN LI+G CK  RI+ A++LF++M  +
Sbjct: 343 SLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQ 402

Query: 317 GCIPNRVTYNSFIR----------------------------YYSVVNE-------IDKA 341
           G  PN V+YN+ I                              YS++ +       + KA
Sbjct: 403 GLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKA 462

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
             + R MQ+  +  P    YT ++HA+C++G   +AR   +EL   G  P    Y  +  
Sbjct: 463 FRLFRAMQS-TYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTI-- 519

Query: 402 ALNAAEEPSLLDDGL---RKRIRDGI---EYRFRQVMKVKPIMKHKE----LLKCGEI 449
            +N   +  LLD+ L   R    DG    E  +  +  ++ +++HK+    LL  GE+
Sbjct: 520 -INGLCKEGLLDEALEAFRNMEADGCPPDEISYNVI--IRGLLQHKDESRALLLVGEM 574



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 130/296 (43%), Gaps = 64/296 (21%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LI  L + G   +A+  F  M    C+PDVY YN +IN LC++G    A  LL
Sbjct: 162 TIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLL 221

Query: 228 EQMELPGFRCPPDVYTYTILISSYCK------------YGMQTGCRKAI----------- 264
           ++ME  G  C P++ TY+ LI S C+            Y    G    I           
Sbjct: 222 KKMEEAG--CQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLC 279

Query: 265 -RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              R  EA+ L   M     +PD+V +N L+D  CK  ++  AL +   M + G  PN V
Sbjct: 280 KFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVV 339

Query: 324 TYNSFIRYYSVVNE-----------------------------------IDKAIEMMRKM 348
           TY+S +  YS+  +                                   ID+A+++  +M
Sbjct: 340 TYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEM 399

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             ++ G+ P + SY  +IH  C+ G++ EA+D    +   G++P  +TY ++ D  
Sbjct: 400 --IHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGF 453



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 15/220 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL-EQMELPGFRCPPDVYT 243
           +++ALA+F  M   +  P +  +  +++A+ ++G +      L +QMEL G    P++YT
Sbjct: 73  IDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLS--PNIYT 130

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
            +I ++ +C+            +R+     +   ++  G  P +V +  LI+G CK    
Sbjct: 131 LSIFMNCFCQL-----------QRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEF 179

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
            +A+ELFDDM  KGC P+  TYN+ I     + E   A  +++KM+      P   +Y+ 
Sbjct: 180 AQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQ-PNMVTYST 238

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +I +LC    V EA D  + +   G  P  +TY  +   L
Sbjct: 239 LIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGL 278



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 17/205 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI    + G + EA   F  M      PD++ Y+++++  C+ G   KA  L   M
Sbjct: 410 SYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAM 469

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +    +  P++  YTIL+ + CK G     RK           LF  +  +G  P V  Y
Sbjct: 470 QSTYLK--PNLVMYTILVHAMCKSGNHKDARK-----------LFSELFVQGLQPHVQLY 516

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             +I+G CK   ++ ALE F +M   GC P+ ++YN  IR      +  +A+ ++ +M++
Sbjct: 517 TTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRD 576

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVL 375
                   +   P +  +C+  +V+
Sbjct: 577 RGF----IADVRPCLSEVCQGKKVM 597



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 15/180 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   ++   D  ++M   GN   + T S+  L+    ++G + +A   F  M+    +
Sbjct: 418 FCQLGKLREAQDLFRNMCTNGNLPDLFTYSI--LLDGFCKQGYLGKAFRLFRAMQSTYLK 475

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  Y ++++A+C+ GN   AR L  ++ + G +  P V  YT +I+  CK G+     
Sbjct: 476 PNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQ--PHVQLYTTIINGLCKEGL----- 528

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + EA   FR M   G  PD ++YN +I G  +     RAL L  +M  +G I +
Sbjct: 529 ------LDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIAD 582



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 2/161 (1%)

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI-ERALELFDDMNKKGCIPNRVT 324
           R I +A   F  ML +  +P ++ +  L+    K  +  +  + L   M   G  PN  T
Sbjct: 71  RNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYT 130

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            + F+  +  +  +D    ++ K+  L    PT  ++T +I+ LC+ G   +A +   ++
Sbjct: 131 LSIFMNCFCQLQRVDLGFSVLAKVIKLGLQ-PTIVTFTTLINGLCKVGEFAQAVELFDDM 189

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           V  G  P  YTY  + + L    E +     L+K    G +
Sbjct: 190 VAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQ 230


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 134/297 (45%), Gaps = 38/297 (12%)

Query: 136 KEMGIV------------FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183
           KEMG V            +++  +    + FL +M +  N  L T  + T ++  L +  
Sbjct: 69  KEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVK--NHCLPTVVTYTNIVDGLCKAE 126

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
              +A+     M+   C P++Y YNV++  LC     ++A+ +LE+M + G+   PDV T
Sbjct: 127 RTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF--PDVVT 184

Query: 244 YTILISSYCKYGMQTGCRKAIRR---------------------RIWEANHLFRLMLFKG 282
           Y   I   CK       RK + R                      +  A+ +   M  +G
Sbjct: 185 YNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRG 244

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PDVV Y+ LIDG CK   +ERA+ L D M K GC PN V YNS +     +  I KA 
Sbjct: 245 CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAE 304

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           +M+ +M+      P   SY   I  LC+A RV +A+     +V+ G  P   +Y ++
Sbjct: 305 DMLVEMERRGF-TPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSML 360



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 152/366 (41%), Gaps = 115/366 (31%)

Query: 154 FLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            L++M+ RG   ++VT +S    IK L +   V+EA     RM      PDV +Y  VIN
Sbjct: 169 MLEEMAVRGYFPDVVTYNS---FIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVIN 222

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGC 260
            LC+ G+ + A  +L+ M   G  C PDV TY+ LI  +CK G            ++ GC
Sbjct: 223 GLCKSGDLDSASRMLDHMSNRG--CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGC 280

Query: 261 R----------KAIRR--RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
           R           A+ R   I +A  +   M  +GF PDVV+YN  IDG CK  R+++A  
Sbjct: 281 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKA 340

Query: 309 LFDDMNKKGCIPNRVTYNSFIR-------------------------------------- 330
           +FD M ++GC PN  +Y+  I                                       
Sbjct: 341 VFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDV 400

Query: 331 -YYSVV-------NEIDKAIEMMRKMQNLN-----------HG----------------- 354
            +Y+V+        +IDKA+++ ++M   N           HG                 
Sbjct: 401 FFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTM 460

Query: 355 -----VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAA 406
                +P   +Y  ++ A+C+ G+   A +   E V GG VP   TY  +   L   N A
Sbjct: 461 VDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMA 520

Query: 407 EEPSLL 412
           EE  LL
Sbjct: 521 EEAYLL 526



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 96/199 (48%), Gaps = 14/199 (7%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++A A F  M    C+PD + + +++  LCR     KAR LL +M+  G  C PD   Y 
Sbjct: 24  DKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMG--CVPDDAIYN 81

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            LIS Y K            +   +A      M+    +P VV Y  ++DG CK  R   
Sbjct: 82  ALISGYSK-----------AKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRD 130

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A++L D+M  KGC PN  TYN  +       ++D+A +M+ +M    +  P   +Y   I
Sbjct: 131 AVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGY-FPDVVTYNSFI 189

Query: 366 HALCEAGRVLEARDFLAEL 384
             LC+  RV EAR FLA +
Sbjct: 190 KGLCKCDRVDEARKFLARM 208



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 36/210 (17%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP---------- 202
           D L +M RRG    V   S    I  L +   V +A A F RM +  C P          
Sbjct: 305 DMLVEMERRGFTPDVV--SYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIV 362

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK--------- 253
           D+  Y V+++ LC+ G F++A  L  ++ L    C PDV+ Y +++ S+CK         
Sbjct: 363 DILLYTVLLDGLCKGGRFDEACALFSKV-LDEKICEPDVFFYNVMLDSHCKRRQIDKALQ 421

Query: 254 ---YGMQTGCRKAIR-----------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
                ++  C   +             R+ +A  +   M+ +GF+PD V Y  L+D  CK
Sbjct: 422 IHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCK 481

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFI 329
             +   ALELF++  K GC+P+ VTY++ I
Sbjct: 482 CGKSAAALELFEEAVKGGCVPDVVTYSALI 511



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 6/181 (3%)

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A+ +F+ M+ K   PD   +  L+ G C++ ++E+A +L   M + GC+P+   YN+ I
Sbjct: 25  KASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALI 84

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             YS   +  +A + + +M   NH +PT  +YT I+  LC+A R  +A   L E+ D G 
Sbjct: 85  SGYSKAKDFGQAFKFLAEMVK-NHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGC 143

Query: 390 VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLKCGEI 449
            P  YTY ++ + L    E   LD+  +      +   F  V+     +K   L KC  +
Sbjct: 144 SPNIYTYNVIVEGLC---EERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKG--LCKCDRV 198

Query: 450 D 450
           D
Sbjct: 199 D 199



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL    +M +  C  +V  +N++++ LC     + A  +L  M   GF   PD  TY
Sbjct: 416 IDKALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGF--IPDFVTY 472

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L+ + CK G               A  LF   +  G VPDVV Y+ LI G       E
Sbjct: 473 GTLVDAMCKCGKSAA-----------ALELFEEAVKGGCVPDVVTYSALITGLVHENMAE 521

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
            A  LF  + ++  +P+  T     R   ++N+  KA
Sbjct: 522 EAYLLFTKLVERRWVPDDKTLGLLHRKLKLLNKPRKA 558


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 18/231 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L ++  V EA   F  M      PD++ YN +I+ALC +  +     LL +M    
Sbjct: 207 IIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEM--VD 264

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PDV ++  ++ + CK G           ++ EA+ +   M+ +G  P+VV Y  L+
Sbjct: 265 SKIMPDVVSFNTVVDALCKEG-----------KVTEAHDVVDKMIQRGVEPNVVTYTALM 313

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLN 352
           DG C    ++ A+++FD M  KGC+PN ++YN+ I  Y  +  IDKA+ +  +M  Q L 
Sbjct: 314 DGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQEL- 372

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +P + +Y+ +IH LC   R+ +A     E+V    +P   TY+++ D L
Sbjct: 373 --IPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYL 421



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 124/266 (46%), Gaps = 29/266 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++ A+++F RM + +  P    +N ++ ++ ++ + +    L  QM+   F  PP++YT 
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMD--SFGIPPNIYTL 99

Query: 245 TILISSYC----------------KYGMQ--TGCRKAIRRRIW------EANHLFRLMLF 280
            ILI+S+C                K G Q  T     + R I+      EA HLF  M+ 
Sbjct: 100 HILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIG 159

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +GF PDVV Y  LI+G CK      A+ L   M +K C PN   YN+ I       ++ +
Sbjct: 160 EGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTE 219

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A  +  +M  +  G+ P   +Y  +IHALC           L E+VD   +P   ++  V
Sbjct: 220 AFNLFSEM--VTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 277

Query: 400 CDALNAAEEPSLLDDGLRKRIRDGIE 425
            DAL    + +   D + K I+ G+E
Sbjct: 278 VDALCKEGKVTEAHDVVDKMIQRGVE 303



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 14/233 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   ++  L +EG V EA     +M Q    P+V  Y  +++  C +   ++A  + + M
Sbjct: 273 SFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTM 332

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G  C P+V +Y  LI+ YCK            +RI +A +LF  M  +  +PD V Y
Sbjct: 333 VCKG--CMPNVISYNTLINGYCKI-----------QRIDKAMYLFGEMCRQELIPDTVTY 379

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + LI G C   R++ A+ LF +M     IPN VTY   + Y      + +A+ +++ ++ 
Sbjct: 380 STLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEG 439

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            N   P        I  +C AG +  ARD  + L   G  P  +TY ++ + L
Sbjct: 440 SNLD-PDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGL 491



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 103/218 (47%), Gaps = 14/218 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V  A +   ++ +   +PD   +  +I  +   G   +A  L ++M   GFR  PDV TY
Sbjct: 112 VGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFR--PDVVTY 169

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI+  CK G  +    AIR        L   M+ K   P+V AYN +ID  CK  ++ 
Sbjct: 170 GTLINGLCKVGNTSA---AIR--------LLGSMVQKNCQPNVFAYNTIIDSLCKDRQVT 218

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  LF +M  KG  P+  TYNS I     + E      ++ +M + +  +P   S+  +
Sbjct: 219 EAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVD-SKIMPDVVSFNTV 277

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + ALC+ G+V EA D + +++  G  P   TY  + D 
Sbjct: 278 VDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDG 315



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 14/217 (6%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + LI  L     + +A+A F+ M      P++  Y ++++ LC+     +A  LL+
Sbjct: 376 TVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLK 435

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            +E  G    PD+    I I   C+ G            +  A  LF  +  KG  PDV 
Sbjct: 436 AIE--GSNLDPDIQVNNIAIDGMCRAG-----------ELEAARDLFSNLSSKGLQPDVW 482

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y+ +I+G C+   ++ A +LF +M++ GC  N   YN+  R +   NE  +AI+++++M
Sbjct: 483 TYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEM 542

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
                    +S+ T  +  L + G     +  L E V
Sbjct: 543 VARGFSAD-ASTMTLFVKMLSDDGLDQSLKQILREFV 578


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 130/296 (43%), Gaps = 20/296 (6%)

Query: 117 EFYHWVERF--FDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           E    V +F   + F N +   ++     R       WD L  + + G   ++  +S   
Sbjct: 253 EIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGG--VMEAASCNA 310

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---E 231
           L+  LG              MK+   +P+V  + ++IN LC+    ++A  + E+M   E
Sbjct: 311 LLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGE 370

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             GF   PDV TY  LI   CK G Q      + R   +     R M      P+ V YN
Sbjct: 371 SNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQP----RCM------PNTVTYN 420

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
           CLIDG CK   IE A ELFD MNK G  PN VT N+ +        I+ A+E   +MQ  
Sbjct: 421 CLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQG- 479

Query: 352 NHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
             G+  ++ +YT +I A C    + +A +   E+++ G  P    Y  +   L+ A
Sbjct: 480 -KGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQA 534



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 135/296 (45%), Gaps = 31/296 (10%)

Query: 122 VERFFDFFHNEM---------TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
            +R +D  H  M         +C  +     R    K +   L +M        V T  +
Sbjct: 286 TDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGI 345

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQ-----FRCRPDVYAYNVVINALCRVGNFNKARFLL 227
             LI  L +   V+EAL  F +M       F   PDV  YN +I+ LC+VG   +   L+
Sbjct: 346 --LINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLV 403

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           E+M     RC P+  TY  LI  YCK  M           I  A  LF  M   G  P+V
Sbjct: 404 ERMRSQP-RCMPNTVTYNCLIDGYCKASM-----------IEAARELFDQMNKDGVPPNV 451

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V  N L+DG CK  RI  A+E F++M  KG   N VTY + IR +  VN I+KA+E+  +
Sbjct: 452 VTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDE 511

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           M  L  G  P +  Y  +I  L +AG++  A   L+++ + G  P   ++ ++ + 
Sbjct: 512 M--LEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLING 565



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 17/257 (6%)

Query: 148 VKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           + G  +F  +M  +G  G  VT    T LI+       + +A+  F  M +  C PD   
Sbjct: 467 INGAVEFFNEMQGKGLKGNAVT---YTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIV 523

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           Y  +I+ L + G  ++A F+L +M+  GF   PD+ ++ +LI+ +C+           + 
Sbjct: 524 YYTLISGLSQAGKLDRASFVLSKMKEAGF--SPDIVSFNVLINGFCR-----------KN 570

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++ EA  + + M   G  PD V YN LI    KT     A  L   M K+G +P  VTY 
Sbjct: 571 KLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYG 630

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           + I  Y +   +D+A+++ R M + +   P +  Y  +I++LC   +V  A   + ++  
Sbjct: 631 ALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKV 690

Query: 387 GGSVPREYTYKLVCDAL 403
            G  P   T+  +   L
Sbjct: 691 KGVKPNTNTFNAMFKGL 707



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 34/264 (12%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           +N A EF++ ++       N +T   +   F   NN++   +   +M   G     +  +
Sbjct: 467 INGAVEFFNEMQGK-GLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAG----CSPDA 521

Query: 172 VT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           +    LI  L + G ++ A     +MK+    PD+ ++NV+IN  CR    ++A  +L++
Sbjct: 522 IVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKE 581

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE------------------- 270
           ME  G +  PD  TY  LIS + K G  +   + +++ + E                   
Sbjct: 582 MENAGIK--PDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLN 639

Query: 271 -----ANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
                A  +FR M     VP + V YN LI+  C+  +++ AL L DDM  KG  PN  T
Sbjct: 640 GNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNT 699

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKM 348
           +N+  +     N + KA E+M +M
Sbjct: 700 FNAMFKGLQEKNWLSKAFELMDRM 723



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 141/364 (38%), Gaps = 78/364 (21%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARG----NNVKGLWDFLKDMSRRGNGELVTT 169
           KA +F++WV+       + +    +  VF       N+   L D  K  + + +   ++ 
Sbjct: 102 KALKFFNWVQANSPCQDSPLLSFTLEAVFEHASREPNSHNKLLDLFK--TSKSHKIPLSV 159

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           ++ T LI+  G   +V+E+   +  +     R   +  N++I+ L R G  + A  LL++
Sbjct: 160 NAATLLIRCFGRAQMVDESFLVYNEL--CPSRRLTHIRNILIDVLFRKGRVDDALHLLDE 217

Query: 230 MELPGFRCPPDVYTYTILISSYCK-------------YGMQTG----------------- 259
           M  P    PP+  T  I+ S+  K              G+ +                  
Sbjct: 218 MLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLI 277

Query: 260 ---CRKAIRRRIWEANH--------------------LFRLMLFK------------GFV 284
              CR     R W+  H                    L R   FK               
Sbjct: 278 SRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQ 337

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMN---KKGCI--PNRVTYNSFIRYYSVVNEID 339
           P+VV +  LI+  CK  R++ ALE+F+ MN     G +  P+ +TYN+ I     V   +
Sbjct: 338 PNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQE 397

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           + + ++ +M++    +P + +Y  +I   C+A  +  AR+   ++   G  P   T   +
Sbjct: 398 EGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTL 457

Query: 400 CDAL 403
            D +
Sbjct: 458 VDGM 461


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 115/222 (51%), Gaps = 20/222 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+K L ++GLV +AL     M +  C PD++ YN+V+N LC++G  + A  +L      G
Sbjct: 397 LVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKG 456

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD++T+  LI  YCK           +R + +A  +   ML  G  PDV+ YN L+
Sbjct: 457 --CIPDIFTFNTLIDGYCK-----------QRNMDKAIEILDTMLSHGITPDVITYNTLL 503

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G CK  +++  ++ F  M +KGC PN +TYN  I  +    ++ +A+E+ ++M+     
Sbjct: 504 NGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL- 562

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            P   +   +I  LC  G + +A +         ++ +EY +
Sbjct: 563 TPDIVTLCTLICGLCSNGELDKAYELFV------TIEKEYKF 598



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 156/334 (46%), Gaps = 30/334 (8%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A + ++ V+    F H   T K M          + + D L +M +  + +++    +  
Sbjct: 23  ALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIG- 81

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++  G +G V EA+  F RM  + C P V +YN ++N L   G F++A  +  +M+  G
Sbjct: 82  IMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG 141

Query: 235 FRCPPDVYTYTILISSYCKYGMQT------------GCR------KAIRRRIW------E 270
               PDVYT+TI + S+C  G  T            GC        A+    +      E
Sbjct: 142 IY--PDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIE 199

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A HLF  ML +G  PD++ +N LI   CK   ++ + +LF  + K+G  PN  T+N FI+
Sbjct: 200 AYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQ 259

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                  ID+A  ++  +  ++ G+ P   SY  +I   C+  +++EA  +L ++V+ G 
Sbjct: 260 GLCRKGAIDEAARLLESI--VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGV 317

Query: 390 VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
            P E+TY  + +    A      D  LR  +  G
Sbjct: 318 EPNEFTYNTIINGFCKAGMMQNADKILRDAMFKG 351



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 29/242 (11%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EA    ++M      P+ + YN +IN  C+ G    A  +L      GF   PD +TY+ 
Sbjct: 304 EAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGF--IPDEFTYSS 361

Query: 247 LISSYCKYG------------MQTGCRKAI------------RRRIWEANHLFRLMLFKG 282
           LI+  C  G            M+ G + +I            +  + +A  L + M+  G
Sbjct: 362 LINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHG 421

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PD+  YN +++G CK   +  A  + +D   KGCIP+  T+N+ I  Y     +DKAI
Sbjct: 422 CSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAI 481

Query: 343 EMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           E++  M  L+HG+ P   +Y  +++ LC+A ++    D    +++ G  P   TY ++ +
Sbjct: 482 EILDTM--LSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIE 539

Query: 402 AL 403
           + 
Sbjct: 540 SF 541



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 124/253 (49%), Gaps = 29/253 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI VL ++G V E+   F ++ +    P+++ +N+ I  LCR G  ++A  LLE +   G
Sbjct: 222 LIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEG 281

Query: 235 FRCPPDVYTYTILISSYCKYG--MQTGC--RKAIRRRI--------------------WE 270
               PDV +Y  LI  +CK+   ++  C   K +   +                      
Sbjct: 282 L--TPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQN 339

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A+ + R  +FKGF+PD   Y+ LI+G C    + RA+ +F +  +KG   + + YN+ ++
Sbjct: 340 ADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVK 399

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             S    + +A+++M+ M  + HG  P   +Y  +++ LC+ G + +A   L + +  G 
Sbjct: 400 GLSKQGLVLQALQLMKDM--MEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGC 457

Query: 390 VPREYTYKLVCDA 402
           +P  +T+  + D 
Sbjct: 458 IPDIFTFNTLIDG 470



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 25/287 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +   +  + D  K M  +G    + T ++  LI+   ++  V+EA+  F  MK     
Sbjct: 506 LCKARKLDNVVDTFKAMLEKGCTPNIITYNI--LIESFCKDRKVSEAMELFKEMKTRGLT 563

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+     +I  LC  G  +KA  L   +E   ++       + I+I+++C         
Sbjct: 564 PDIVTLCTLICGLCSNGELDKAYELFVTIE-KEYKFSYSTAIFNIMINAFCX-------- 614

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              +  +  A  LF  M      PD   Y  +ID  CKT  I+ A     +   KG +P+
Sbjct: 615 ---KLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPS 671

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG-RVLEARDF 380
             T    +    V + + +A+ ++  M   N  VP        ++++ EA  + + A   
Sbjct: 672 FTTCGKVLNCLCVTHRLSEAVVIINLMVQ-NGIVPEE------VNSIFEADKKEVAAPKI 724

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYR 427
           + E +   S    Y+Y+L+ D +       L +   ++++R  IEYR
Sbjct: 725 VVEYLLKKSHITYYSYELLYDGI---RNRKLDNKKFKRKVRSQIEYR 768


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/259 (33%), Positives = 127/259 (49%), Gaps = 17/259 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           T+     LI      G +++A A    M   +   PDV  YN +I    + G    A  +
Sbjct: 346 TSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEV 405

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
           L  M   G  C P+VY+YTIL+  +CK G           +I EA +L   M   G  P+
Sbjct: 406 LRDMRNKG--CKPNVYSYTILVDGFCKLG-----------KIDEAYNLLNEMSADGLKPN 452

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            V +NCLI   CK +RI  A+E+F +M +KGC P+  T+NS I     V+EI  A+ ++R
Sbjct: 453 TVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLR 512

Query: 347 KMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
            M  ++ GV  ++ +Y  +I+A    G + EAR  + E+V  GS+  E TY  +   L  
Sbjct: 513 DM--ISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCR 570

Query: 406 AEEPSLLDDGLRKRIRDGI 424
           A E         K +RDG+
Sbjct: 571 AGEVDKARSLFEKMLRDGL 589



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 133/291 (45%), Gaps = 31/291 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   +   ++ L +MS   +G    T    CLI    +E  + EA+  F  M +  C+
Sbjct: 428 FCKLGKIDEAYNLLNEMS--ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCK 485

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDVY +N +I+ LC V     A +LL  M   G     +  TY  LI+++ + G     R
Sbjct: 486 PDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV--VANTVTYNTLINAFLRRGEIKEAR 543

Query: 262 KAIRRRIWE------------------------ANHLFRLMLFKGFVPDVVAYNCLIDGC 297
           K +   +++                        A  LF  ML  G VP  ++ N LI+G 
Sbjct: 544 KLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGL 603

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C++  +E A+E   +M  +G  P+ VT+NS I        I+  + M RK+Q    G+P 
Sbjct: 604 CRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ--AEGIPP 661

Query: 358 SS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
            + +Y  ++  LC+ G V +A   L E ++ G VP + T+ ++  +L   E
Sbjct: 662 DTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSLVPQE 712



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 130/301 (43%), Gaps = 28/301 (9%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           N V      L+DM++ G    V  S +   LI  L +   VNEAL     M    C PD 
Sbjct: 225 NEVDSALSVLRDMTKHG---CVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDA 281

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             +N VI  LC+    N+A  ++ +M + GF   PD  TY  L++  CK G     +   
Sbjct: 282 ETFNDVILGLCKFDRINEAAKMVNRMLIRGF--TPDDITYGYLMNGLCKIGRVDAAKDLF 339

Query: 265 RR--------------------RIWEANHLFRLMLFK-GFVPDVVAYNCLIDGCCKTYRI 303
            R                    R+ +A  +   M+   G VPDV  YN LI G  K   +
Sbjct: 340 YRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLV 399

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
             ALE+  DM  KGC PN  +Y   +  +  + +ID+A  ++ +M + +   P +  +  
Sbjct: 400 GLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEM-SADGLKPNTVGFNC 458

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           +I A C+  R+ EA +   E+   G  P  YT+  +   L   +E       LR  I +G
Sbjct: 459 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 518

Query: 424 I 424
           +
Sbjct: 519 V 519



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 118/263 (44%), Gaps = 19/263 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +   GN  K   +   DM  R     + T  V  ++K L     V+ AL+    M +  C
Sbjct: 185 ILVSGNCHKVAANVFYDMLSRKIPPTLFTFGV--VMKALCAVNEVDSALSVLRDMTKHGC 242

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+   Y  +I++L +    N+A  LLE+M L G  C PD  T+  +I   CK+      
Sbjct: 243 VPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMG--CVPDAETFNDVILGLCKFD----- 295

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 RI EA  +   ML +GF PD + Y  L++G CK  R++ A +LF  + K    P
Sbjct: 296 ------RINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----P 345

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
             V +N+ I  +     +D A  ++  M      VP   +Y  +I+   + G V  A + 
Sbjct: 346 TSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEV 405

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L ++ + G  P  Y+Y ++ D  
Sbjct: 406 LRDMRNKGCKPNVYSYTILVDGF 428



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 19/230 (8%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  S   ++++L        A   FY M   +  P ++ + VV+ ALC V   + A  +L
Sbjct: 175 TFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVL 234

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
             M   G  C P+   Y  LI S  K      C      R+ EA  L   M   G VPD 
Sbjct: 235 RDMTKHG--CVPNSVIYQTLIHSLSK------C-----NRVNEALQLLEEMFLMGCVPDA 281

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             +N +I G CK  RI  A ++ + M  +G  P+ +TY   +     +  +D A ++  +
Sbjct: 282 ETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYR 341

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG-GSVPREYTY 396
           +       PTS  +  +IH     GR+ +A+  L+++V   G VP   TY
Sbjct: 342 IPK-----PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTY 386



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 14/181 (7%)

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
            R +LE   +  + C P   +Y +++       +   C K        A ++F  ML + 
Sbjct: 160 TRLMLEMRNV--YSCEPTFKSYNVVLEIL----VSGNCHKV-------AANVFYDMLSRK 206

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P +  +  ++   C    ++ AL +  DM K GC+PN V Y + I   S  N +++A+
Sbjct: 207 IPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEAL 266

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +++ +M  L   VP + ++  +I  LC+  R+ EA   +  ++  G  P + TY  + + 
Sbjct: 267 QLLEEMF-LMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNG 325

Query: 403 L 403
           L
Sbjct: 326 L 326



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 18/186 (9%)

Query: 198 FRCRPDVYAYNVVINALCRVGNFNK--ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
           + C P   +YNVV+  L   GN +K  A    + +     + PP ++T+ +++ + C   
Sbjct: 170 YSCEPTFKSYNVVLEILVS-GNCHKVAANVFYDMLSR---KIPPTLFTFGVVMKALCAV- 224

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                       +  A  + R M   G VP+ V Y  LI    K  R+  AL+L ++M  
Sbjct: 225 ----------NEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFL 274

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
            GC+P+  T+N  I      + I++A +M+ +M  +    P   +Y  +++ LC+ GRV 
Sbjct: 275 MGCVPDAETFNDVILGLCKFDRINEAAKMVNRML-IRGFTPDDITYGYLMNGLCKIGRVD 333

Query: 376 EARDFL 381
            A+D  
Sbjct: 334 AAKDLF 339


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 167/358 (46%), Gaps = 31/358 (8%)

Query: 61  QSPRSIGRQTGFRHRTPLRQ-----RILKKE--AYNIANNVLVLGPAAYRDPQKVTLGL- 112
           Q P  I    G +  T  ++     R++  E  ++ + +++  L P+  +     TL L 
Sbjct: 46  QQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQLI 105

Query: 113 ---NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL-VT 168
               KA  F+ WVE    F HNE +   M  +  R  N+    +F+  + ++  G + + 
Sbjct: 106 RTPAKALHFFRWVEAK-GFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLG 164

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
                 LI+  G  GL  E++  F  MK+    P V  +N +++ + + G  + A+ L +
Sbjct: 165 DRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFD 224

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M L  +   PD YT+ ILI  +C   M       +    W     F+ M      PDVV
Sbjct: 225 EM-LDTYGVTPDTYTFNILIRGFCMNSM-------VDEGFW----FFKEMSRFKCDPDVV 272

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            YN L+DG C+  +++ A  +   M KK     PN VTY + IR Y +  ++ +A+ ++ 
Sbjct: 273 TYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLA 332

Query: 347 KMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV-DGGSVPREYTYKLVCDA 402
           +M  ++ G+ P   +Y  +I  LCEA ++ + ++ L  +V DGG +P   T   +  A
Sbjct: 333 EM--VSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKA 388



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 115/272 (42%), Gaps = 27/272 (9%)

Query: 162 GNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           G+G  +  T ++  LIK     G + EA + F +M + R +PD   Y+V++ +LC+ G+F
Sbjct: 371 GDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDF 430

Query: 221 NKARFLLEQME-----LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
            +A    +++      L    C P V  Y  +    C  G           +  +A  +F
Sbjct: 431 RRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNG-----------KTKKAERVF 479

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
           R ++ +G   D  +Y  LI G C+    E   +L   M ++  +P+  TY   I      
Sbjct: 480 RQLMKRG-TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKK 538

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL--------VDG 387
            +   A + + KM   +H +PT++ +  I+ AL E G   E+   +  +        +D 
Sbjct: 539 GDPVLAHKSLEKMLKSSH-LPTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDL 597

Query: 388 GSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
            +   E     +C +    E   +L   L KR
Sbjct: 598 STHTMEELVSFLCQSRKLLEAQKMLLFSLEKR 629


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 148/317 (46%), Gaps = 37/317 (11%)

Query: 91  ANNVLVLGPAAYRD-PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVK 149
           A N L + P  ++  PQ  +  L  AT FY  +E       N  T +E   +        
Sbjct: 41  AQNELSISPQIFKSRPQFGSYKLGDAT-FYRLIE-------NYATSREFHFIH------- 85

Query: 150 GLWDFLKDMSRRGNGELVTTSSVTCLI-KVLGEEGLVNEALATFYRM-KQFRCRPDVYAY 207
                L  M R G    V T ++  LI K  G+  L  EA+  F+RM     C+  V ++
Sbjct: 86  ---QVLDRMKREGR---VLTETIFILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSF 139

Query: 208 NVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           N V+N + + G+F+ A +F L           P++ TY ++I + CK G           
Sbjct: 140 NSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLG----------- 188

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           +I  A   FR M  K   PDV  Y+ L++G CK  R++ A+ L D+M  +GC+PN VT+N
Sbjct: 189 QIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFN 248

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             I   S   ++ +A +++  M  L   VP   +Y  +IH LC  G++ +A   L ++V 
Sbjct: 249 VLIDALSKNGDLSRAAKLVDNM-FLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVS 307

Query: 387 GGSVPREYTYKLVCDAL 403
              VP + TY  + + L
Sbjct: 308 SKCVPNQVTYGTIINGL 324



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 118/253 (46%), Gaps = 14/253 (5%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           MS    G+       + LI  L +EG    A+  +  M +  C+P+V  Y   I+ LCR 
Sbjct: 338 MSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRD 397

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
              ++A  +L++M   GF   P+ +TY+ L+  + K G     +KAI   +W+       
Sbjct: 398 EKPDEAEDILQEMLSKGFL--PNAFTYSSLMKGFFKKG---DSQKAIL--VWKE------ 444

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+ +    +VV  + L++G C++ R+  AL ++  M  +G  P+ V Y+S I+    V  
Sbjct: 445 MMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGS 504

Query: 338 IDKAIEMMRKMQ-NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +DK +++  +MQ       P   +Y  + +ALC    +  A D L  ++D G  P   T 
Sbjct: 505 VDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTC 564

Query: 397 KLVCDALNAAEEP 409
            +  + L     P
Sbjct: 565 NIFLETLRERINP 577



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 22/234 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  +G +++AL+   +M   +C P+   Y  +IN L +         +L  ME  G
Sbjct: 285 LIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERG 344

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +   + Y Y+ LIS   K G       A+R        L++ M  KG  P+VV Y   I
Sbjct: 345 QKA--NEYIYSSLISGLFKEGKS---ENAVR--------LWKEMAEKGCKPNVVVYGAFI 391

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLN 352
           DG C+  + + A ++  +M  KG +PN  TY+S ++ +    +  KAI + ++M  Q++ 
Sbjct: 392 DGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMR 451

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDA 402
           H V   S    +++ LCE+GR+ EA      ++  G  P    Y    K +CD 
Sbjct: 452 HNVVCCSV---LLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDV 502



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 15/178 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D L++M  +G   L    + + L+K   ++G   +A+  +  M     R +V   +V++N
Sbjct: 405 DILQEMLSKGF--LPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLN 462

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEA 271
            LC  G   +A  +   M   G +  PDV  Y+ +I   C  G +  G +     +  E 
Sbjct: 463 GLCESGRLREALTVWTHMLGEGLK--PDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEP 520

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
                        PDVV YN L +  C+   + RA++L + M  +GC P+ +T N F+
Sbjct: 521 KSR----------PDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFL 568



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 14/154 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +G++ K +  + + MS+     +V  S    L+  L E G + EAL  +  M     +
Sbjct: 430 FKKGDSQKAILVWKEMMSQDMRHNVVCCS---VLLNGLCESGRLREALTVWTHMLGEGLK 486

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV AY+ +I  LC VG+ +K   L  +M+    +  PDV TY IL ++ C+   Q    
Sbjct: 487 PDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCR---QDNLT 543

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           +AI         L   ML +G  PD +  N  ++
Sbjct: 544 RAI--------DLLNSMLDEGCDPDSLTCNIFLE 569



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
           N KG  PN +TYN  I+    + +ID+A++  R+M  L +  P   +Y+ +++ LC+  R
Sbjct: 166 NSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMP-LKNCNPDVFTYSTLMNGLCKERR 224

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           V EA   L E+   G +P   T+ ++ DAL+
Sbjct: 225 VDEAVFLLDEMQAEGCLPNPVTFNVLIDALS 255


>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
 gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
          Length = 491

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 127/275 (46%), Gaps = 31/275 (11%)

Query: 146 NNVKGLWDFLKDMSRR--------GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           N +   W  +KD SR          +G   T ++   ++K     G +  A   F +MK+
Sbjct: 203 NTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKK 262

Query: 198 F-----RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
                  C+PDV +Y  +++ L   G   KAR + ++M   G  C P V TY  LI   C
Sbjct: 263 RGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEG--CAPSVATYNALIQVIC 320

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           K G            + +A  +F  M  KG+VP+VV Y  LI G C   +I+R L+L + 
Sbjct: 321 KKG-----------NVEDAVTVFDGMRVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLER 369

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           M   GC P   TYN  IRY     E++K +++  KM      +P   +Y  II A+    
Sbjct: 370 MKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRK 429

Query: 373 R----VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           R    VL AR  + E+VD G +PR + +  V + L
Sbjct: 430 RAEDMVLAAR-MVEEMVDRGYLPRRFMFNRVLNGL 463



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 10/160 (6%)

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           R   +A  L R  L + F PDVV YN L DG C+     RAL++   M + G  P + TY
Sbjct: 179 RHAGKAASLVR-ALEQRFTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTY 237

Query: 326 N----SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           N     F R   + +  D  ++M ++        P   SYT ++H L  AG++ +AR   
Sbjct: 238 NIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVF 297

Query: 382 AELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLR 417
            E+   G  P   TY    +++C   N  E+   + DG+R
Sbjct: 298 DEMAKEGCAPSVATYNALIQVICKKGN-VEDAVTVFDGMR 336


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 167/358 (46%), Gaps = 31/358 (8%)

Query: 61  QSPRSIGRQTGFRHRTPLRQ-----RILKKE--AYNIANNVLVLGPAAYRDPQKVTLGL- 112
           Q P  I    G +  T  ++     R++  E  ++ + +++  L P+  +     TL L 
Sbjct: 46  QQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQLI 105

Query: 113 ---NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL-VT 168
               KA  F+ WVE    F HNE +   M  +  R  N+    +F+  + ++  G + + 
Sbjct: 106 RTPAKALHFFRWVEAK-GFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLG 164

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
                 LI+  G  GL  E++  F  MK+    P V  +N +++ + + G  + A+ L +
Sbjct: 165 DRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFD 224

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M L  +   PD YT+ ILI  +C   M       +    W     F+ M      PDVV
Sbjct: 225 EM-LDTYGVTPDTYTFNILIRGFCMNSM-------VDEGFW----FFKEMSRFKCDPDVV 272

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            YN L+DG C+  +++ A  +   M KK     PN VTY + IR Y +  ++ +A+ ++ 
Sbjct: 273 TYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLA 332

Query: 347 KMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV-DGGSVPREYTYKLVCDA 402
           +M  ++ G+ P   +Y  +I  LCEA ++ + ++ L  +V DGG +P   T   +  A
Sbjct: 333 EM--VSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKA 388



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 146/402 (36%), Gaps = 106/402 (26%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMG-------------IVFARGNN--VKGLWDFLKD 157
           N     Y W   F +      T KE+G             IV  RG     K L+D + D
Sbjct: 169 NSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLD 228

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
                 G    T +   LI+      +V+E    F  M +F+C PDV  YN +++ LCR 
Sbjct: 229 T----YGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRA 284

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G    A  +++ M        P+V TYT LI  YC           +++ + EA  L   
Sbjct: 285 GKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYC-----------MKQDMAEALSLLAE 333

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM-NKKGCIPNRVTYNSFIRYYSVVN 336
           M+ +G  P+ + YN LI G C+  ++++  E+ + M    G IP+  T N+ I+ +  + 
Sbjct: 334 MVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMG 393

Query: 337 EIDKAIEMMRKMQNLN--------------------------------------HGV--- 355
           ++++A  +  KM  L                                       H V   
Sbjct: 394 KLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCK 453

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS-------------------------- 389
           P  ++Y P+   LC  G+  +A     +L+  G+                          
Sbjct: 454 PLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLILGHCREGTPEAGFDLL 513

Query: 390 --------VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
                   VP   TY L+ D L    +P L    L K ++  
Sbjct: 514 VLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSS 555



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 19/231 (8%)

Query: 162 GNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           G+G  +  T ++  LIK     G + EA + F +M + R +PD   Y+V++ +LC+ G+F
Sbjct: 371 GDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDF 430

Query: 221 NKARFLLEQME-----LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
            +A    +++      L    C P V  Y  +    C  G           +  +A  +F
Sbjct: 431 RRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNG-----------KTKKAERVF 479

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
           R ++ +G   D  +Y  LI G C+    E   +L   M ++  +P+  TY   I      
Sbjct: 480 RQLMKRG-TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKK 538

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            +   A + + KM   +H +PT++ +  I+ AL E G   E+   +  +++
Sbjct: 539 GDPVLAHKSLEKMLKSSH-LPTTAIFHSILAALVEKGCAHESASLVKLMLE 588


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 122/267 (45%), Gaps = 29/267 (10%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+G      +   LIK     G++++A+  F  M+    +P V  Y  VI ALCR+G  +
Sbjct: 389 GDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMD 448

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAI----- 264
            A     QM   G    PD Y Y  LI  +C +G            M  G R  I     
Sbjct: 449 DAMEKFNQMIDQGV--VPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGS 506

Query: 265 -------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    R+ +A ++F L +  G  PD V YN L+DG C   ++E+AL +FD M   G
Sbjct: 507 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 566

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLE 376
             PN V Y + +  Y  +  ID+ + + R+M  L  G+ P++  Y  II  L EAGR + 
Sbjct: 567 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREM--LQKGIKPSTILYNIIIDGLFEAGRTVP 624

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A+    E+ + G    + TY +V   L
Sbjct: 625 AKVKFHEMTESGIAMNKCTYSIVLRGL 651



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 13/226 (5%)

Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+K   E    +EAL    +R  +  C PDV++YN+++ +LC  G   +A  LL  M   
Sbjct: 154 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEG 213

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C PDV  Y  +I  + K G            + +A  LF+ M+ +G  PD+V Y+ +
Sbjct: 214 GTVCSPDVVAYNTVIDGFFKEG-----------DVNKACDLFKEMVQRGIPPDLVTYSSV 262

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +   CK   +++A      M  KG +P+  TYN+ I  YS   +  +A+ + ++M+    
Sbjct: 263 VHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRR-QS 321

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +P   +   ++ +LC+ G++ EARD    +   G  P  ++Y ++
Sbjct: 322 ILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIM 367



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 123/269 (45%), Gaps = 29/269 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D L+ M+  G        +   +I    +EG VN+A   F  M Q    PD+  Y+ V++
Sbjct: 205 DLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVH 264

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM-QTGCR--KAIRR--- 266
           ALC+    +KA   L QM   G    PD +TY  LI  Y   G  +   R  K +RR   
Sbjct: 265 ALCKARAMDKAEAFLRQMVNKGVL--PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSI 322

Query: 267 ------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
                             +I EA  +F  M  KG  PDV +Y  +++G      +    +
Sbjct: 323 LPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTD 382

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
           LFD M   G  P   T+N  I+ Y+    +DKA+ +  +M+  +HGV P   +Y  +I A
Sbjct: 383 LFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMR--DHGVKPHVVTYMTVIAA 440

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTY 396
           LC  G++ +A +   +++D G VP +Y Y
Sbjct: 441 LCRIGKMDDAMEKFNQMIDQGVVPDKYAY 469



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 125/280 (44%), Gaps = 29/280 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L + G V +A   F         PD   YN++++  C VG   KA  + + M   G
Sbjct: 507 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 566

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V  Y  L++ YCK G           RI E   LFR ML KG  P  + YN +I
Sbjct: 567 IE--PNVVGYGTLVNGYCKIG-----------RIDEGLSLFREMLQKGIKPSTILYNIII 613

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  +  R   A   F +M + G   N+ TY+  +R        D+AI + ++++ +N  
Sbjct: 614 DGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVK 673

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
           +   +  T +I  + +  RV EA+D  A +   G VP   TY ++          +L+ +
Sbjct: 674 IDIITLNT-MIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMI--------TNLIKE 724

Query: 415 GLRKRIRDGIEYRFRQVMKVKP---IMKH--KELLKCGEI 449
           GL +   D   +   Q    +P   ++ H  +ELLK  EI
Sbjct: 725 GLVEEAED--MFSSMQNAGCEPDSRLLNHVVRELLKKNEI 762



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 13/178 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L E G    A   F+ M +     +   Y++V+  L +   F++A FL +  EL  
Sbjct: 612 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFK--ELRA 669

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                D+ T   +I+       QT       RR+ EA  LF  +   G VP  V Y+ +I
Sbjct: 670 MNVKIDIITLNTMIAGM----FQT-------RRVEEAKDLFASISRSGLVPCAVTYSIMI 718

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
               K   +E A ++F  M   GC P+    N  +R     NEI +A   + K+   N
Sbjct: 719 TNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERN 776



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 80/188 (42%), Gaps = 13/188 (6%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P  YTY IL+           C +A R  +  A   F  +L  G   D +  + L+ G C
Sbjct: 111 PTSYTYAILMDC---------CTRAHRPELALA--FFGQLLRTGLRVDAIIASHLLKGFC 159

Query: 299 KTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-QNLNHGVP 356
           +  R + AL+ L     + GC+P+  +YN  ++      +  +A +++R M +      P
Sbjct: 160 EAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSP 219

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              +Y  +I    + G V +A D   E+V  G  P   TY  V  AL  A      +  L
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279

Query: 417 RKRIRDGI 424
           R+ +  G+
Sbjct: 280 RQMVNKGV 287


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 15/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L ++G  ++A+  F  M+  R +P++  YN VI+ LC+ GN  KAR LLE+M   G
Sbjct: 103 LIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKG 162

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PD+ TY  LI+++ +             RI EA      M   G  PDV+  N L+
Sbjct: 163 GKSAPDIVTYNTLINAFYR-----------ASRIREACAFREKMKAAGINPDVLTCNILV 211

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G CK   +E ALE+ D M   G +P+ +TYNS I    V  ++ +A E+++ M      
Sbjct: 212 SGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSC---- 267

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P   ++  ++   C+AG +  A + L E+     +P   TY ++ + L
Sbjct: 268 SPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGL 316



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 144/307 (46%), Gaps = 39/307 (12%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQFR 199
           F R + ++    F + M   G    +    +TC I V G  ++G V EAL     MK   
Sbjct: 179 FYRASRIREACAFREKMKAAG----INPDVLTCNILVSGICKDGDVEEALEILDGMKLAG 234

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM--- 256
             PDV  YN +I+ALC  G   +A  +L+ M      C PD+ T+  L+  +CK GM   
Sbjct: 235 PVPDVITYNSIIHALCVAGKVVEAAEILKTMS-----CSPDLVTFNTLLDGFCKAGMLPR 289

Query: 257 -----QTGCRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
                +  CR+ I                  ++  A +L   ++ +G++PDV+AY  L+D
Sbjct: 290 ALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVD 349

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G CK+  IE A +L  +M+ +GC    V Y+S +  Y     + KA E++ +M ++N  V
Sbjct: 350 GLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINM-V 408

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLL 412
           P   +Y  ++  L + G + +A   +++LV  G VP   TY  + D L   N   E   L
Sbjct: 409 PPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDL 468

Query: 413 DDGLRKR 419
            D +  R
Sbjct: 469 ADEMASR 475



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 108/225 (48%), Gaps = 14/225 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+  L + G + EA      M    CR  V  Y+ +++  CR GN +KAR +L +M  
Sbjct: 345 TSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEM-- 402

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
                 P ++TY I++    K G            I +A  L   ++ +G+VPDVV YN 
Sbjct: 403 VSINMVPPLFTYNIVLGGLIKDG-----------SISKAVSLISDLVARGYVPDVVTYNT 451

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LIDG CK  R+  A +L D+M  +GC PN VT  S +     V  +D A  ++ +M    
Sbjct: 452 LIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKR 511

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           H  P    YT +I  LC++ R+ +A   L  +   G    ++ Y+
Sbjct: 512 HA-PNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYR 555



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 121/277 (43%), Gaps = 30/277 (10%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G++  AL     M +    PDV  Y +++N LCRVG    A +LLE++   G+   PDV 
Sbjct: 285 GMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGY--IPDVI 342

Query: 243 TYTILISSYCKYG-----------MQT-GCRKAI------------RRRIWEANHLFRLM 278
            YT L+   CK G           M   GCR  +               + +A  +   M
Sbjct: 343 AYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEM 402

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           +    VP +  YN ++ G  K   I +A+ L  D+  +G +P+ VTYN+ I      N +
Sbjct: 403 VSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRV 462

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
            +A ++  +M +     P   +   ++  LC  GRV +A   + E+      P    Y  
Sbjct: 463 REACDLADEMAS-RGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTS 521

Query: 399 VCDAL---NAAEEPSLLDDGLRKRIRDGIEYRFRQVM 432
           + D L   +  ++  ++ D +R +     ++ +R+++
Sbjct: 522 LIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLI 558



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 17/221 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           + DV++YN +++ L + G+  +   + + +   G  C P++ T+ ILI   CK G     
Sbjct: 24  KHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSG--CSPNLVTFKILIRGNCKAG----- 76

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
            +A+R     A    R +      PDV  +N LI G  K    ++A++LF++M      P
Sbjct: 77  -QAMR-----ALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKP 130

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM-QNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
             VTYN+ I        ++KA E++ +M +      P   +Y  +I+A   A R+ EA  
Sbjct: 131 EIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACA 190

Query: 380 FLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLLDDGLR 417
           F  ++   G  P   T  ++   +      EE   + DG++
Sbjct: 191 FREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMK 231



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 93/221 (42%), Gaps = 32/221 (14%)

Query: 154 FLKDMSRRG--NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
            +K+MS RG   G ++ +S V+   +     G V++A      M      P ++ YN+V+
Sbjct: 363 LVKEMSVRGCRTGVVMYSSLVSGYCRA----GNVHKAREILAEMVSINMVPPLFTYNIVL 418

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRR---- 266
             L + G+ +KA  L+  +   G+   PDV TY  LI   CK   ++  C  A       
Sbjct: 419 GGLIKDGSISKAVSLISDLVARGY--VPDVVTYNTLIDGLCKANRVREACDLADEMASRG 476

Query: 267 -------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
                              R+ +A  L   M  K   P+VV Y  LIDG CK+ R++ A 
Sbjct: 477 CFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDAC 536

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            + D M  +G   +   Y   I   S    + +A+ M  +M
Sbjct: 537 MVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEM 577



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 51/201 (25%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G+  DV +YN L+D   K+    R  +++ D+   GC PN VT+   IR      +  +A
Sbjct: 22  GYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRA 81

Query: 342 IEMMRKMQNLN------------HGV----------------------PTSSSYTPIIHA 367
           +E +R +   +            HG+                      P   +Y  +I  
Sbjct: 82  LEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISG 141

Query: 368 LCEAGRVLEARDFLAELV--DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           LC++G + +AR+ L E++   G S P   TY  + +A   A            RIR+   
Sbjct: 142 LCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRA-----------SRIREACA 190

Query: 426 YRFRQVMKVKPIMKHKELLKC 446
             FR+ MK   I  + ++L C
Sbjct: 191 --FREKMKAAGI--NPDVLTC 207



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 15/175 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            + D+  RG    V T +   LI  L +   V EA      M    C P+      V+  
Sbjct: 433 LISDLVARGYVPDVVTYNT--LIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFG 490

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LCRVG  + A  L+ +M     R  P+V  YT LI   CK             R+ +A  
Sbjct: 491 LCRVGRVDDAWSLVVEMSRK--RHAPNVVVYTSLIDGLCK-----------SDRMDDACM 537

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
           +   M  +G   D  AY  LI       R+  A+ ++D+M  +G +P+  T  + 
Sbjct: 538 VLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 592


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 125/255 (49%), Gaps = 15/255 (5%)

Query: 173 TCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           T L+K L  E   + A+     RM +  C P V++YN+++  LC      +A  LL  M 
Sbjct: 137 TPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMA 196

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G  CPPDV +Y+ +I    K G              +A   +  ML +G +PDVV YN
Sbjct: 197 DDGGDCPPDVVSYSTIIDGLFKEGDSD-----------KAYSTYHEMLERGILPDVVTYN 245

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            ++   CK   +++A+++ + M K G +P+ +TYNS +  Y    +  +AI ++ KM   
Sbjct: 246 TIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKM--C 303

Query: 352 NHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
           + GV P + +YT ++  LC+ GR +EAR  L  ++  G  P   TY  +           
Sbjct: 304 SDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALV 363

Query: 411 LLDDGLRKRIRDGIE 425
            + D L   +R+GI+
Sbjct: 364 EMRDLLDLMVRNGIQ 378



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 105/241 (43%), Gaps = 47/241 (19%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S + +I  L +EG  ++A +T++ M +    PDV  YN ++ ALC+    +KA  +L +M
Sbjct: 208 SYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRM 267

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PD  TY  ++  YC  G              EA  +   M   G  PD V Y
Sbjct: 268 VKNGVM--PDCITYNSIVHGYCSSGQSK-----------EAIGILEKMCSDGVEPDAVTY 314

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS---VVNEIDKAIEMM-- 345
             L+D  CK  R   A ++ D M K+G  PN +TY++ +  Y+    + E+   +++M  
Sbjct: 315 TSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVR 374

Query: 346 -----------------RKMQNLNHGV------------PTSSSYTPIIHALCEAGRVLE 376
                             K QN++  +            P   +Y  +I  LC++GRV +
Sbjct: 375 NGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDD 434

Query: 377 A 377
           A
Sbjct: 435 A 435



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 109/246 (44%), Gaps = 33/246 (13%)

Query: 188 ALATFYRMKQFR---CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           A++ F RM +       P ++ Y ++I   CR G  +     L  +   G+R  P ++T 
Sbjct: 79  AVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTP 138

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWE---ANHLFRL-MLFKGFV---------------- 284
             L+ S C     +     + RR+ E   A H+F   +L KG                  
Sbjct: 139 --LLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMA 196

Query: 285 -------PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
                  PDVV+Y+ +IDG  K    ++A   + +M ++G +P+ VTYN+ +        
Sbjct: 197 DDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQA 256

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           +DKA++++ +M   N  +P   +Y  I+H  C +G+  EA   L ++   G  P   TY 
Sbjct: 257 MDKAMDVLNRMVK-NGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYT 315

Query: 398 LVCDAL 403
            + D L
Sbjct: 316 SLMDYL 321



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 29/226 (12%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +F  G++ K    + + + R    ++VT +++   +  L +   +++A+    RM +   
Sbjct: 216 LFKEGDSDKAYSTYHEMLERGILPDVVTYNTI---VAALCKAQAMDKAMDVLNRMVKNGV 272

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD   YN +++  C  G   +A  +LE+M   G    PD  TYT L+   CK G     
Sbjct: 273 MPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVE--PDAVTYTSLMDYLCKNGRCIEA 330

Query: 261 RK------------------------AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           RK                        A +  + E   L  LM+  G  PD   ++ LI  
Sbjct: 331 RKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICA 390

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
           C K   ++ A+ +F  M ++   P+ VTY + I        +D A+
Sbjct: 391 CTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDAM 436


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 122/253 (48%), Gaps = 20/253 (7%)

Query: 157 DMSRRGNGELV---TTSSVTCLIKVLGEEGLVNEALATFYRM---KQFRCRPDVYAYNVV 210
           D+  R  GE     T  S   ++ V+ +EGL N AL  +  +   K     P+   +N+V
Sbjct: 117 DLFHRMWGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLV 176

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           I A+CR+G  +KA  +    E+P   C PD YTY+ L+   CK             RI E
Sbjct: 177 IKAMCRLGLVDKAIEVFR--EIPLRNCAPDNYTYSTLMHGLCK-----------EERIDE 223

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L   M  +G  P++VA+N LI   CK   + RA +L D+M  KGC+PN VTYN+ + 
Sbjct: 224 AVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVH 283

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
              +  +++KA+ ++ +M + N  VP   ++  +I+     GR  +    L  L   G  
Sbjct: 284 GLCLKGKLEKAVSLLNQMVS-NKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHR 342

Query: 391 PREYTYKLVCDAL 403
             EY Y  +   L
Sbjct: 343 GNEYVYSSLISGL 355



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 106/214 (49%), Gaps = 14/214 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L  +G + +A++   +M   +C P+   +  +IN     G  +    +L  +E  G
Sbjct: 281 LVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARG 340

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R   + Y Y+ LIS  CK G           +  +A  L++ M+ KG  P+ + Y+ LI
Sbjct: 341 HR--GNEYVYSSLISGLCKEG-----------KFNQAMELWKEMVGKGCGPNTIVYSALI 387

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG C+  +++ A     +M  KG +PN  TY+S +R Y    +  KAI + ++M N N+ 
Sbjct: 388 DGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMAN-NNC 446

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +     Y+ +I+ LC+ G+ +EA     +++  G
Sbjct: 447 IHNEVCYSILINGLCKDGKFMEALMVWKQMLSRG 480



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 27/255 (10%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + L+  L +E  ++EA++    M+     P++ A+NV+I+ALC+ G+  +A  L++ M L
Sbjct: 209 STLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFL 268

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA---NHLFRLMLFKGFVPDVVA 289
            G  C P+  TY  L+   C  G        + + +      N +    L  GFV    A
Sbjct: 269 KG--CVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRA 326

Query: 290 ---------------------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
                                Y+ LI G CK  +  +A+EL+ +M  KGC PN + Y++ 
Sbjct: 327 SDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSAL 386

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           I       ++D+A   + +M+N  + +P S +Y+ ++    EAG   +A     E+ +  
Sbjct: 387 IDGLCREGKLDEARGFLSEMKNKGY-LPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNN 445

Query: 389 SVPREYTYKLVCDAL 403
            +  E  Y ++ + L
Sbjct: 446 CIHNEVCYSILINGL 460



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 43/225 (19%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           L+    RGN E V +S    LI  L +EG  N+A+  +  M    C P+   Y+ +I+ L
Sbjct: 336 LEARGHRGN-EYVYSS----LISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGL 390

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW----- 269
           CR G  ++AR  L +M+  G+   P+ +TY+ L+  Y + G      KAI   +W     
Sbjct: 391 CREGKLDEARGFLSEMKNKGYL--PNSFTYSSLMRGYFEAG---DSHKAIL--VWKEMAN 443

Query: 270 ------------------------EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
                                   EA  +++ ML +G   DVVAY+ +I G C    +E+
Sbjct: 444 NNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQ 503

Query: 306 ALELFDDMNKKGCI--PNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            L+LF+ M  +G +  P+ +TYN  +  + +   I +AI+++  M
Sbjct: 504 GLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNIM 548



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 25/198 (12%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           C+E  +  ARG        FL +M  +G   L  + + + L++   E G  ++A+  +  
Sbjct: 391 CREGKLDEARG--------FLSEMKNKG--YLPNSFTYSSLMRGYFEAGDSHKAILVWKE 440

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M    C  +   Y+++IN LC+ G F +A  + +QM   G +   DV  Y+ +I  +C  
Sbjct: 441 MANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKL--DVVAYSSMIHGFCNA 498

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFV--PDVVAYNCLIDGCCKTYRIERALELFDD 312
            +           + +   LF  ML +G V  PDV+ YN L++  C    I RA+++ + 
Sbjct: 499 NL-----------VEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRAIDILNI 547

Query: 313 MNKKGCIPNRVTYNSFIR 330
           M  +GC P+ +T + F++
Sbjct: 548 MLDQGCDPDFITCDIFLK 565


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 131/285 (45%), Gaps = 53/285 (18%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G V +A   F +M +  C+P+V  YNV+++ LC  G   +A  L  +M+   
Sbjct: 156 LILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMK--S 213

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PDV TY  L+ + CK            RR+ E   LF  M   G+VP+V+ ++ LI
Sbjct: 214 HSCSPDVVTYNTLLDAVCK-----------ARRVEEGCKLFEAMRAAGYVPNVITFSTLI 262

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNR-------------------------------- 322
            G C+T  +E+ALE+F  M + GC PN+                                
Sbjct: 263 HGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIP 322

Query: 323 ---VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
              V YNS I  Y     +D+A ++ R+M       PT  ++  +I   C+ G++  A +
Sbjct: 323 PDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANE 382

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR--KRIRD 422
            +AE+   G      TY+++   L+ A +   LD+ L   K++R+
Sbjct: 383 LVAEMGTKGLAADSCTYRILIAGLSRATK---LDEALEVYKQMRE 424



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 15/244 (6%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G +    + + LI  L   G + +AL  F  M +  C+P+ Y Y  +I+ LCR    
Sbjct: 247 RAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKV 306

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            +AR L E+M       PPD   Y  LI+ YCK G            + EA  L+R M  
Sbjct: 307 IQARELFEKMTQACI--PPDAVAYNSLIAGYCKRG-----------SMDEAEKLYREMSG 353

Query: 281 -KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
             G  P +V +N LIDG CK  ++ RA EL  +M  KG   +  TY   I   S   ++D
Sbjct: 354 GAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLD 413

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           +A+E+ ++M+     +   S  +  +  LC+ G + +A          G+VP   T++++
Sbjct: 414 EALEVYKQMREKKFLLDPVSCVS-FVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRIL 472

Query: 400 CDAL 403
            ++L
Sbjct: 473 SESL 476



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 18/244 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L +M  RG  +  +  + + L++ L +   V+ A + F  M +    PD   +  +I  
Sbjct: 102 ILSEMVMRG--QTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILG 159

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+ G    A    +QM  P   C P+V  Y +L+   C  G           ++ +AN 
Sbjct: 160 LCQAGKVKDASERFKQM--PKHGCQPNVPVYNVLLHGLCSSG-----------QLEQANT 206

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF  M      PDVV YN L+D  CK  R+E   +LF+ M   G +PN +T+++ I    
Sbjct: 207 LFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLC 266

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
              E++KA+E+   M  L  G  P   +YT +I  LC A +V++AR+   ++      P 
Sbjct: 267 RTGELEKALEVFGSM--LEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPD 324

Query: 393 EYTY 396
              Y
Sbjct: 325 AVAY 328



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 118/295 (40%), Gaps = 62/295 (21%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +IK L +E    E+      M    C PDV+A+N V+    R  N  KAR + + M  
Sbjct: 14  SSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVE 73

Query: 233 PGFRCPPDVYTYTILISSYCKYGM---------------QTGCRKAIR---------RRI 268
            G++  PD  +Y ILI    K G                QT   +A           RR+
Sbjct: 74  SGYK--PDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRV 131

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN------- 321
             A+ LF  M+  G  PD + +  LI G C+  +++ A E F  M K GC PN       
Sbjct: 132 DHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVL 191

Query: 322 ----------------------------RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
                                        VTYN+ +        +++  ++   M+   +
Sbjct: 192 LHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGY 251

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            VP   +++ +IH LC  G + +A +    +++ G  P +YTY  +   L  AE+
Sbjct: 252 -VPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEK 305



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 98/209 (46%), Gaps = 14/209 (6%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M+      +V+ Y+ +I +L +     ++  +LE+M   G  C PDV+ +  ++  + + 
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAG--CNPDVFAFNGVMQGFAR- 57

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                        + +A  +++ M+  G+ PD V+Y+ LI G  K  +++ +L++  +M 
Sbjct: 58  ----------SNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMV 107

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
            +G  P+   Y+S +R  +    +D A  +  +M    H  P    +  +I  LC+AG+V
Sbjct: 108 MRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHH-PDRLMFYELILGLCQAGKV 166

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +A +   ++   G  P    Y ++   L
Sbjct: 167 KDASERFKQMPKHGCQPNVPVYNVLLHGL 195



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           K    +V  Y+ +I    K  + E + ++ ++M   GC P+   +N  ++ ++  N ++K
Sbjct: 4   KNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEK 63

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A E+ + M    +  P + SY  +IH L + G++ E+   L+E+V  G  P    Y  + 
Sbjct: 64  AREVYQHMVESGYK-PDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLV 122

Query: 401 DALNAA----EEPSLLDDGLR 417
            AL  A       SL D+ +R
Sbjct: 123 RALAKARRVDHASSLFDEMIR 143


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 126/260 (48%), Gaps = 16/260 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R  +     D L+ M  R     V T S   +I  L  +G ++ A++ F  M+    +  
Sbjct: 195 RSGDTSLALDLLRKMEERNVKADVFTYST--IIDSLCRDGCIDAAISLFKEMETKGIKSS 252

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V  YN ++  LC+ G +N    LL+ M        P+V T+ +L+  + K G        
Sbjct: 253 VVTYNSLVRGLCKAGKWNDGALLLKDM--VSREIVPNVITFNVLLDVFVKEG-------- 302

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              ++ EAN L++ M+ +G  P+++ YN L+DG C   R+  A  + D M +  C P+ V
Sbjct: 303 ---KLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIV 359

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           T+ S I+ Y +V  +D  +++ R +      V  + +Y+ ++   C++G++  A +   E
Sbjct: 360 TFTSLIKGYCMVKRVDDGMKVFRNISKRGL-VANAVTYSILVQGFCQSGKIKLAEELFQE 418

Query: 384 LVDGGSVPREYTYKLVCDAL 403
           +V  G +P   TY ++ D L
Sbjct: 419 MVSHGVLPDVMTYGILLDGL 438



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 24/288 (8%)

Query: 142 FARGNNVKGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
             RG    G W+     LKDM  R     V T +V  L+ V  +EG + EA   +  M  
Sbjct: 259 LVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV--LLDVFVKEGKLQEANELYKEMIT 316

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
               P++  YN +++  C     ++A  +L+ M     +C PD+ T+T LI  YC     
Sbjct: 317 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN--KCSPDIVTFTSLIKGYC----- 369

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                 + +R+ +   +FR +  +G V + V Y+ L+ G C++ +I+ A ELF +M   G
Sbjct: 370 ------MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 423

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPIIHALCEAGRVL 375
            +P+ +TY   +       +++KA+E+   +Q   ++ G+     YT II  +C+ G+V 
Sbjct: 424 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVM---YTTIIEGMCKGGKVE 480

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           +A +    L   G  P   TY ++   L      S  +  LRK   DG
Sbjct: 481 DAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 528



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 18/239 (7%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++A+A F  M + R  P +  ++   +A+ R   FN      +Q+EL G     ++YT  
Sbjct: 60  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGI--AHNIYTLN 117

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           I+I+ +C+      C+      +     L ++M   G+ PD   +N LI G     ++  
Sbjct: 118 IMINCFCRC-----CKTCFAYSV-----LGKVMKL-GYEPDTTTFNTLIKGLFLEGKVSE 166

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A+ L D M + GC P+ VTYNS +       +   A++++RKM+  N       +Y+ II
Sbjct: 167 AVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADV-FTYSTII 225

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRI 420
            +LC  G +  A     E+   G      TY    + +C A    +   LL D + + I
Sbjct: 226 DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 284



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 24/245 (9%)

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           +++S+RG    +  ++VT  I V G  + G +  A   F  M      PDV  Y ++++ 
Sbjct: 382 RNISKRG----LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDG 437

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC  G   KA  + E  +L   +    +  YT +I   CK G           ++ +A +
Sbjct: 438 LCDNGKLEKALEIFE--DLQKSKMDLGIVMYTTIIEGMCKGG-----------KVEDAWN 484

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF  +  KG  P+V+ Y  +I G CK   +  A  L   M + G  PN  TYN+ IR + 
Sbjct: 485 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHL 544

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
              ++  + +++ +M++       +SS   +I  L  A + L  R  L++    GS  R+
Sbjct: 545 RDGDLTASAKLIEEMKSCGFSAD-ASSIKMVIDMLLSAMKRLTLRYCLSK----GSKSRQ 599

Query: 394 YTYKL 398
              +L
Sbjct: 600 DLLEL 604



 Score = 42.0 bits (97), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L + M+ +G  P+ + Y+ LIDG CK  R++ A ++ D M  KG        +S IR
Sbjct: 718 AEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKG--------DSDIR 769

Query: 331 Y 331
           Y
Sbjct: 770 Y 770


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 18/263 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            ++   +K     L++M +      LV  S+   LI  L ++G V++AL    ++ +   
Sbjct: 170 LSKNGQIKAALHLLQEMEKSSVQPNLVMYSA---LIDGLCKDGFVSDALGLCSQIGERGI 226

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
             D   YN +I+  C VG + +   LL +M        PD YT+ ILI + CK G     
Sbjct: 227 LLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVD--PDDYTFNILIDALCKEG----- 279

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 RI EA  +  +M  +G  PD+V YN L++G C    +  A ELF+ M K+G  P
Sbjct: 280 ------RILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEP 333

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + + YN  I  Y     +D+A+ + +++ N N  VPT +SY  +I  LC +GR+   +  
Sbjct: 334 DVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL-VPTIASYNSLIDGLCNSGRISHVKKL 392

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L E+      P   TY ++ DAL
Sbjct: 393 LDEMHGSAQPPDVVTYNILIDAL 415



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 122/265 (46%), Gaps = 20/265 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L+   +   LI      G   E      +M +    PD Y +N++I+ALC+ G   +A
Sbjct: 225 GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA 284

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           + +L  M   G +  PD+ TY  L+  YC            R  + EA  LF  M+ +G 
Sbjct: 285 QGVLAMMSKRGEK--PDIVTYNALMEGYCS-----------RENVHEARELFNRMVKRGL 331

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PDV+ YN LIDG CKT  ++ A+ LF ++  K  +P   +YNS I        I    +
Sbjct: 332 EPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKK 391

Query: 344 MMRKMQNLNHGV---PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           ++ +M    HG    P   +Y  +I ALC+ GR+LEA   L  ++  G  P   TY  + 
Sbjct: 392 LLDEM----HGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMM 447

Query: 401 DALNAAEEPSLLDDGLRKRIRDGIE 425
           D        ++  D   + ++ G+E
Sbjct: 448 DGYCLRNNVNVAKDIFNRMVKSGLE 472



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 22/262 (8%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
            R ++VK L D +      G+ +     +   LI  L +EG + EAL     M +   +P
Sbjct: 384 GRISHVKKLLDEM-----HGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKP 438

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           ++  YN +++  C   N N A+ +  +M   G    PD+  Y +LI+ YCK  M      
Sbjct: 439 NIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLE--PDILNYNVLINGYCKTEM------ 490

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                + EA  LF+ M  K  +PD+ +YN LIDG C   RI    EL D+M   G  P+ 
Sbjct: 491 -----VDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDV 545

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           +TYN  +  +      DKAI + R++     G+ P   +   I+  LC+  ++  A D L
Sbjct: 546 ITYNILLDAFCKTQPFDKAISLFRQIV---EGIWPDFYTNHAIVDNLCKGEKLKMAEDAL 602

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
             L+  G  P   TY ++ +AL
Sbjct: 603 KHLLMHGCSPNVQTYTILINAL 624



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 18/227 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P++  +N +IN  C  G   KA    + +   G+    D +TY  LI+   K G     
Sbjct: 122 QPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLF--DQFTYGTLINGLSKNG----- 174

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 +I  A HL + M      P++V Y+ LIDG CK   +  AL L   + ++G + 
Sbjct: 175 ------QIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILL 228

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           + VTYNS I     V    +  +++ KM  +N++   P   ++  +I ALC+ GR+LEA+
Sbjct: 229 DAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVD---PDDYTFNILIDALCKEGRILEAQ 285

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
             LA +   G  P   TY  + +   + E      +   + ++ G+E
Sbjct: 286 GVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLE 332



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 17/248 (6%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           NNV    D    M + G    +   +V  LI    +  +V+EA+  F  M+     PD+ 
Sbjct: 454 NNVNVAKDIFNRMVKSGLEPDILNYNV--LINGYCKTEMVDEAIVLFKEMRHKNLIPDIA 511

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           +YN +I+ LC +G     + LL++M   G    PDV TY IL+ ++CK            
Sbjct: 512 SYNSLIDGLCNLGRIPHVQELLDEMCDSGQS--PDVITYNILLDAFCK-----------T 558

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           +   +A  LFR  + +G  PD    + ++D  CK  +++ A +    +   GC PN  TY
Sbjct: 559 QPFDKAISLFR-QIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTY 617

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              I          +A+ ++ KM++ N   P + ++  II  L +     +A     E++
Sbjct: 618 TILINALCKDGSFGEAMLLLSKMED-NDRPPDAITFEIIIGVLLQRNETDKAEKLREEMI 676

Query: 386 DGGSVPRE 393
             G V  E
Sbjct: 677 ARGLVNIE 684



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 114/241 (47%), Gaps = 14/241 (5%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A+  F RM +    P    ++ ++ A+ R+G++  A  L  Q++  G    P + T+
Sbjct: 36  VDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGIS--PSIATF 93

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           TILI+ Y             +     A  L   +L  G+ P++V +N +I+G C    I 
Sbjct: 94  TILINCYFH-----------QSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIF 142

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +AL+   ++  +G + ++ TY + I   S   +I  A+ ++++M+  +   P    Y+ +
Sbjct: 143 KALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEK-SSVQPNLVMYSAL 201

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           I  LC+ G V +A    +++ + G +    TY  + D   +      +   L K +R+ +
Sbjct: 202 IDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENV 261

Query: 425 E 425
           +
Sbjct: 262 D 262


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 134/267 (50%), Gaps = 18/267 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           +E+T   +   + +   +K  +     M ++G    V T   T L   L + G ++ A  
Sbjct: 416 DEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVT--YTALADGLCKNGEIDVANE 473

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
             + M +   +P+VY YN ++N LC++GN  +   L+E+M+L GF   PD  TYT L+ +
Sbjct: 474 LLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFY--PDTITYTTLMDA 531

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           YCK G            + +A+ L R+ML K   P +V +N L++G C +  +E    L 
Sbjct: 532 YCKMG-----------EMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLI 580

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALC 369
           + M +KG +PN  T+NS ++ Y + N +    E+ + M   + GV P S++Y  +I   C
Sbjct: 581 EWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMH--DRGVMPDSNTYNILIKGHC 638

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTY 396
           +A  + EA     E+V+ G      TY
Sbjct: 639 KARNMKEAWFLHKEMVEKGYSVTAATY 665



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 17/245 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I    + G V+ A   F  M++ +  PD+  Y  VI+ +C+ G   +AR +  +M +
Sbjct: 351 TTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLV 410

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PD  TYT LI  YCK G            + EA  +   M+ KG  P+VV Y  
Sbjct: 411 KGLE--PDEVTYTALIDGYCKAG-----------EMKEAFSVHNQMVQKGLTPNVVTYTA 457

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L DG CK   I+ A EL  +M++KG  PN  TYN+ +     +  I++ +++M +M +L 
Sbjct: 458 LADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEM-DLA 516

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
              P + +YT ++ A C+ G + +A + L  +++    P   T+ ++   +N      +L
Sbjct: 517 GFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVL---MNGFCMSGML 573

Query: 413 DDGLR 417
           +DG R
Sbjct: 574 EDGER 578



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 122/258 (47%), Gaps = 16/258 (6%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T S   ++  L + G V EA     +M      PDV +Y VV++  CR+G  +K   L++
Sbjct: 242 TVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVD 301

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +++  G +  PD Y Y  +I   CK G            + EA  L R M   G  PD V
Sbjct: 302 ELKGKGLK--PDEYIYNNIILLLCKNG-----------EVVEAEQLLRGMRKWGVFPDNV 348

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  +I G CK   +  A +LFD+M +K  +P+ VTY S I       ++ +A EM  +M
Sbjct: 349 VYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEM 408

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
             L  G+ P   +YT +I   C+AG + EA     ++V  G  P   TY  + D L    
Sbjct: 409 --LVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNG 466

Query: 408 EPSLLDDGLRKRIRDGIE 425
           E  + ++ L +  R G++
Sbjct: 467 EIDVANELLHEMSRKGLQ 484



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 26/185 (14%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + T L+    + G + +A      M   R +P +  +NV++N  C  G       L+E
Sbjct: 522 TITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIE 581

Query: 229 QMELPGFRCPPDVYTYTILISSYC-KYGMQ--TGCRKAIR-------------------- 265
            M   G    P+  T+  L+  YC K  M+  T   KA+                     
Sbjct: 582 WMLEKGIM--PNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCK 639

Query: 266 -RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
            R + EA  L + M+ KG+      Y+ LI G  K  +   A +LF++M K G +  +  
Sbjct: 640 ARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDI 699

Query: 325 YNSFI 329
           Y+ F+
Sbjct: 700 YDIFV 704



 Score = 45.1 bits (105), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 7/144 (4%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G   + V+ N ++   C+  ++  A  L   M  +G  P+ V+Y   +  Y  + E+DK 
Sbjct: 237 GVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKV 296

Query: 342 IEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV- 399
           ++++ +++    G+ P    Y  II  LC+ G V+EA   L  +   G  P    Y  V 
Sbjct: 297 LKLVDELK--GKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVI 354

Query: 400 ---CDALNAAEEPSLLDDGLRKRI 420
              C   N +    L D+  RK+I
Sbjct: 355 SGFCKLGNVSAACKLFDEMRRKKI 378


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I +  + G ++ A   F  M    C PD+Y YN++I+  CR    + AR LLE+M   G
Sbjct: 382 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 441

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             CPPDV TY  ++S  CK             ++ EA  ++ ++   G+  DVV  + LI
Sbjct: 442 --CPPDVVTYNSIVSGLCK-----------ASQVDEAYEVYEVLRNGGYFLDVVTCSTLI 488

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+ R++ A +L  +M + G  P+ V Y   I  +   +++DK++    +M  L+ G
Sbjct: 489 DGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEM--LDKG 546

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            VPT  +Y+ +I  LC++ RV +    L  +++ G  P    Y  V D L
Sbjct: 547 CVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGL 596



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 150/344 (43%), Gaps = 65/344 (18%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLK--------------- 156
           L+KA +F+ W      + H++ TC  +   F R    +  +D  K               
Sbjct: 112 LDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYS 171

Query: 157 --------------------DMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRM 195
                               +M +RG   +V  ++V   +IK L + G V+ AL   YR 
Sbjct: 172 TLINGFCKARDFQQAYRLLDEMEKRG---IVPHNAVYNTIIKGLCDNGRVDSAL-VHYRD 227

Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
            Q  C P V  Y ++++ALC+    + A  +LE M   G  C P+V TY  LI+ +CK G
Sbjct: 228 MQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAG--CAPNVVTYNTLINGFCKLG 285

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                       + EA  LF  ML     PDV  YN LIDG CK  R +   +L  +M K
Sbjct: 286 -----------NMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVK 334

Query: 316 KGCIPNRVTYN----SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
            GC PN +TYN    S ++    ++  + A  M+R+        P+  ++  +I   C+ 
Sbjct: 335 YGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRR-----DCKPSHFTFNLMIDMFCKV 389

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415
           G++  A +    + D G +P  YTY ++   ++ A   + +DD 
Sbjct: 390 GQLDLAYELFQLMTDRGCLPDIYTYNIM---ISGACRANRIDDA 430



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 152/379 (40%), Gaps = 120/379 (31%)

Query: 148 VKGLWD---------FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
           +KGL D           +DM R     ++T    T L+  L +   +++A      M + 
Sbjct: 209 IKGLCDNGRVDSALVHYRDMQRNCAPSVIT---YTILVDALCKSARISDASLILEDMIEA 265

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG--- 255
            C P+V  YN +IN  C++GN ++A  L  QM      C PDV+TY ILI  YCK     
Sbjct: 266 GCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS--CSPDVFTYNILIDGYCKQERPQ 323

Query: 256 ---------MQTGC---------------------------RKAIRRRIWEANHLFRLM- 278
                    ++ GC                           +  +RR    ++  F LM 
Sbjct: 324 DGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMI 383

Query: 279 --------------LF-----KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                         LF     +G +PD+  YN +I G C+  RI+ A +L + M + GC 
Sbjct: 384 DMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCP 443

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIE-----------------------------------M 344
           P+ VTYNS +      +++D+A E                                   +
Sbjct: 444 PDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKL 503

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           +R+M+  N   P   +YT +IH  C+A ++ ++  F +E++D G VP   TY +V D L 
Sbjct: 504 LREMER-NGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLC 562

Query: 405 AAEEPSLLDDGLRKRIRDG 423
            +            R+RDG
Sbjct: 563 KS-----------ARVRDG 570



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 126/278 (45%), Gaps = 17/278 (6%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           +++A E Y  V R   +F + +TC  +     +   +      L++M R G+   V   +
Sbjct: 462 VDEAYEVYE-VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVV--A 518

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
            T LI    +   ++++LA F  M    C P V  Y++VI+ LC+         LL+ M 
Sbjct: 519 YTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTML 578

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G    PD   YT +I   CK                EA  L++LM   G  P VV YN
Sbjct: 579 ERGVT--PDAIVYTSVIDGLCK-----------SDSYDEAYELYKLMKQTGCAPTVVTYN 625

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L+D  CK  R++ A+ L + M   GC+P+ VTYNS    +    E DKA  + + M++ 
Sbjct: 626 VLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSR 685

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
               PT   Y+ ++  L    ++ +A +   E ++ G+
Sbjct: 686 GCS-PTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGA 722



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 99/237 (41%), Gaps = 24/237 (10%)

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
           Y+  +F C       N +++A  R     +A  L +        C PD  TY+ LI+ +C
Sbjct: 128 YKHSKFTC-------NCLLSAFVRKKKAQEAYDLFKNHRCG--LCSPDSITYSTLINGFC 178

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           K            R   +A  L   M  +G VP    YN +I G C   R++ AL  + D
Sbjct: 179 K-----------ARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRD 227

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEA 371
           M ++ C P+ +TY   +        I  A  ++  M  +  G  P   +Y  +I+  C+ 
Sbjct: 228 M-QRNCAPSVITYTILVDALCKSARISDASLILEDM--IEAGCAPNVVTYNTLINGFCKL 284

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRF 428
           G + EA     ++++    P  +TY ++ D     E P      L++ ++ G E  F
Sbjct: 285 GNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNF 341


>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 142/313 (45%), Gaps = 25/313 (7%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           +KA      +ER F    + +T   +   + R  +     D L+ M+  G     TT ++
Sbjct: 180 SKAASLVRALERRFP--PDVVTYNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNI 237

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQF-----RCRPDVYAYNVVINALCRVGNFNKARFLL 227
             ++K     G +  A   F +MK+       C+PD+ +Y  +I+ L   G  +KAR L 
Sbjct: 238 --ILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGVAGQLDKARKLF 295

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M   G  C P V TY  LI   CK G            + +A  +F  M+ K ++P+V
Sbjct: 296 DEMSKEG--CTPSVATYNALIQVICKKG-----------NVEDAVTVFDDMVRKDYMPNV 342

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y  LI G C   +I+RA++L + M  +GC P   TYN  IRY     EI+KA+ +  +
Sbjct: 343 VTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEIEKALCLFER 402

Query: 348 MQNLNHGVPTSSSYTPIIHALC---EAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           M      +P   +Y  II A+     A  +  A   + E+V+ G +PR +    V + L 
Sbjct: 403 MSKGEDCLPNQDTYNIIISAMFVRKRAEDMATAARMVMEMVERGYLPRRFMLNRVLNGLM 462

Query: 405 AAEEPSLLDDGLR 417
                 +  D LR
Sbjct: 463 LTGNQQISRDLLR 475


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 142/316 (44%), Gaps = 17/316 (5%)

Query: 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           G  +A E +        F  +      + + F RG N++        MSR G      + 
Sbjct: 209 GYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRDALKVFDLMSREGTCA-PNSV 267

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S + LI  L E G + EA     +M +  C+P    Y V+I ALC  G  +KA  L ++M
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEM 327

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G  C P+V+TYT+LI   C+ G           +I EAN + R M+  G  P V+ Y
Sbjct: 328 IARG--CKPNVHTYTVLIDGLCRDG-----------KIEEANGVCRKMVKDGIFPSVITY 374

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI+G CK  R+  A EL   M K+ C PN  T+N  +     V +  KA+ ++++M  
Sbjct: 375 NALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRM-- 432

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
           L++G+ P   SY  +I  LC  G +  A   L  +      P   T+  + +A     + 
Sbjct: 433 LDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKA 492

Query: 410 SLLDDGLRKRIRDGIE 425
            +    L   +R GI 
Sbjct: 493 DVASAFLGLMLRKGIS 508



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 106/248 (42%), Gaps = 49/248 (19%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           +A+    RM      PD+ +YNV+I+ LCR G+ N A  LL  M    F   PD  T+T 
Sbjct: 424 KAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMN--SFDLEPDCLTFTA 481

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC-------- 298
           +I+++CK G           +   A+    LML KG   D V    LIDG C        
Sbjct: 482 IINAFCKQG-----------KADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDA 530

Query: 299 ---------------------------KTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
                                      K  +++  L +   +NK G +P+ VTY + +  
Sbjct: 531 LFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDG 590

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                +I  +  M+  M+ L+  +P    YT II+ LC+ GRV EA   L+ + D G  P
Sbjct: 591 LIRSGDISGSFRMLELMK-LSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSP 649

Query: 392 REYTYKLV 399
              TY ++
Sbjct: 650 NHVTYTVM 657



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 21/229 (9%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L T  S+  ++ +L +   + E LA   ++ +    P V  Y  +++ L R G+ + +  
Sbjct: 543 LTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFR 602

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           +LE M+L G  C P+VY YTI+I+  C++G           R+ EA  L   M   G  P
Sbjct: 603 MLELMKLSG--CLPNVYPYTIIINGLCQFG-----------RVEEAEKLLSAMQDSGVSP 649

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV----VNEIDKA 341
           + V Y  ++ G     +++RALE    M ++G   N   Y+S +R + +    + E D  
Sbjct: 650 NHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPE 709

Query: 342 I--EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              E++  ++ L  G  TS     ++  LC+ GR  E+   +  ++  G
Sbjct: 710 CIKELISVVEQL--GGSTSGLCIFLVTRLCKEGRTDESNGLVQTILKSG 756



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 17/198 (8%)

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPDV 287
           +ME  GF     +  Y  ++++ CK G              EA  +F   + K GF+ D 
Sbjct: 185 RMEADGF--VVGMIDYRTIVNALCKNGYT------------EAAEMFMCKILKVGFLLDS 230

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKG-CIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
                L+ G C+   +  AL++FD M+++G C PN V+Y+  I     V  +++A  +  
Sbjct: 231 HIVTSLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKD 290

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           +M       P++ +YT +I ALC+ G + +A +   E++  G  P  +TY ++ D L   
Sbjct: 291 QMGE-KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRD 349

Query: 407 EEPSLLDDGLRKRIRDGI 424
            +    +   RK ++DGI
Sbjct: 350 GKIEEANGVCRKMVKDGI 367



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 15/195 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL  M R+G    +   + T LI  +   G   +AL     + + R     ++ NV+++ 
Sbjct: 498 FLGLMLRKGIS--LDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDM 555

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           L +     +   +L ++   G    P V TYT L+    + G  +G           +  
Sbjct: 556 LSKGCKLKEELAMLGKINKLGL--VPSVVTYTTLVDGLIRSGDISG-----------SFR 602

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +  LM   G +P+V  Y  +I+G C+  R+E A +L   M   G  PN VTY   ++ Y 
Sbjct: 603 MLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYV 662

Query: 334 VVNEIDKAIEMMRKM 348
              ++D+A+E +R M
Sbjct: 663 NNGKLDRALETVRAM 677



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 104/257 (40%), Gaps = 35/257 (13%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + +  + T L+  L   G ++ +      MK   C P+VY Y ++IN LC+ G   +A
Sbjct: 576 GLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEA 635

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR---RRIWEANHLFRLMLF 280
             LL  M+  G    P+  TYT+++  Y   G      + +R    R +E N      L 
Sbjct: 636 EKLLSAMQDSGV--SPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLL 693

Query: 281 KGFV----------PDVV--------------AYNC--LIDGCCKTYRIERALELFDDMN 314
           +GFV          P+ +              +  C  L+   CK  R + +  L   + 
Sbjct: 694 RGFVLSQKGIRETDPECIKELISVVEQLGGSTSGLCIFLVTRLCKEGRTDESNGLVQTIL 753

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGR 373
           K G    +   +  +  Y    +  K +E++  +  L  G VP+  S+  +I  L + G 
Sbjct: 754 KSGVFLEK-AIDIIMESYCSKKKHTKCVELITLV--LKSGFVPSFKSFCLVIQGLKKEGD 810

Query: 374 VLEARDFLAELVDGGSV 390
              AR+ + EL+    V
Sbjct: 811 TERARELVMELLTSNGV 827


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 147/310 (47%), Gaps = 25/310 (8%)

Query: 125 FFDFFHNEMT-CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183
           F  F  +++T C  +  + A G+  + L  F +  ++    ++V  +S   L+K L  +G
Sbjct: 319 FKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNS---LVKGLCLQG 375

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           L+  AL     M +  C PD+  YN+VIN LC++GN + A  ++    + G+   PDV+T
Sbjct: 376 LILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL--PDVFT 433

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           +  LI  YCK           R ++  A  L   M   G  PD + YN +++G CK  ++
Sbjct: 434 FNTLIDGYCK-----------RLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKV 482

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYT 362
               E F +M  KGC PN +TYN  I  +   N++++A +++ KM     G+ P + S+ 
Sbjct: 483 NEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMS--QEGLHPDAVSFN 540

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA----LNAAEEPSLLDDGLRK 418
            +I+  C  G +  A     +L + G      T+  +  A    LN      + D+ L K
Sbjct: 541 TLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSK 600

Query: 419 RIR-DGIEYR 427
             R D   YR
Sbjct: 601 GHRADSYTYR 610



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 114/228 (50%), Gaps = 17/228 (7%)

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           I+ L E G + EA+     M+ +   PDV  YN +I  LC+     +A   L +M   G 
Sbjct: 229 IRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG- 286

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
            C PD +TY  +I  YCK  M           + EA  L +  +FKGFVPD V Y  LI+
Sbjct: 287 -CLPDDFTYNTIIDGYCKISM-----------VQEATELLKDAVFKGFVPDQVTYCSLIN 334

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G C    +ERALELF++   KG  P+ V YNS ++   +   I  A+++M +M     G 
Sbjct: 335 GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMA--EEGC 392

Query: 356 -PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            P   +Y  +I+ LC+ G + +A   + + +  G +P  +T+  + D 
Sbjct: 393 HPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 440



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 21/249 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++  L + G V EA     ++ Q     +++ YN+ I  LC  G   +A  L++ M    
Sbjct: 193 VLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA 252

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDV TY  LI   CK  M             EA H  R M+ +G +PD   YN +I
Sbjct: 253 V---PDVVTYNTLIRGLCKKSMPQ-----------EAMHYLRRMMNQGCLPDDFTYNTII 298

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK   ++ A EL  D   KG +P++VTY S I       ++++A+E+  + Q    G
Sbjct: 299 DGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQ--AKG 356

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEP 409
           + P    Y  ++  LC  G +L A   + E+ + G  P   TY +V + L    N ++  
Sbjct: 357 IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 416

Query: 410 SLLDDGLRK 418
            +++D + K
Sbjct: 417 VVMNDAIMK 425



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 121/264 (45%), Gaps = 32/264 (12%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+ L ++ +  EA+    RM    C PD + YN +I+  C++    +A  LL+     G
Sbjct: 262 LIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKG 321

Query: 235 FRCPPDVYTYTILISSYCKYG--------MQTGCRKAIRRRIWEANHLFRLMLFKGFV-- 284
           F   PD  TY  LI+  C  G              K I+  I   N L + +  +G +  
Sbjct: 322 FV--PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILH 379

Query: 285 --------------PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
                         PD+  YN +I+G CK   I  A  + +D   KG +P+  T+N+ I 
Sbjct: 380 ALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLID 439

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
            Y    ++D A++++ +M    +G+ P + +Y  +++ LC+AG+V E  +   E++  G 
Sbjct: 440 GYCKRLKLDSALQLVERM--WEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 497

Query: 390 VPREYTYKLVCDAL---NAAEEPS 410
            P   TY ++ +     N  EE S
Sbjct: 498 HPNPITYNILIENFCRSNKMEEAS 521



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 24/247 (9%)

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           I+     G + +A+  F RM  F C P   AYN +++AL      ++A  +  +M   G 
Sbjct: 58  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 117

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------------------RIWEANHLF 275
              PD++T+TI + S+C         + +R                        +A  LF
Sbjct: 118 S--PDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLF 175

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             ML     P++ A+N ++   CK   +  A  L   + ++G   N  TYN +IR     
Sbjct: 176 DQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEA 235

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
             + +A+ ++  M+   + VP   +Y  +I  LC+     EA  +L  +++ G +P ++T
Sbjct: 236 GRLPEAVRLVDGMR--AYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFT 293

Query: 396 YKLVCDA 402
           Y  + D 
Sbjct: 294 YNTIIDG 300



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 113/268 (42%), Gaps = 47/268 (17%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++ AL    RM ++   PD   YN V+N LC+ G  N+     ++M L G  C P+  TY
Sbjct: 447 LDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKG--CHPNPITY 504

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI ++C+             ++ EA+ +   M  +G  PD V++N LI G C+   +E
Sbjct: 505 NILIENFCR-----------SNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLE 553

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG---------- 354
            A  LF  + +KG      T+N+ I  +S    +  A ++  +M +  H           
Sbjct: 554 GAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLI 613

Query: 355 ------------------------VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                                   +P+ S++  +I++L    RV +A   +  +V  G V
Sbjct: 614 DGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVV 673

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRK 418
           P      L  D    A    L++D ++K
Sbjct: 674 PEVVDTILNADKKEIAAPKILVEDLMKK 701



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 26/204 (12%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   ++  L + G VNE   TF  M    C P+   YN++I   CR     +A  ++ 
Sbjct: 466 TITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIV 525

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR---------------------- 266
           +M   G    PD  ++  LI  +C+ G   G     ++                      
Sbjct: 526 KMSQEGLH--PDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSG 583

Query: 267 --RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              +  A  +F  ML KG   D   Y  LIDG CKT  ++RA     +M KKG IP+  T
Sbjct: 584 KLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMST 643

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKM 348
           +   I   +V + + +A+ ++  M
Sbjct: 644 FGRVINSLTVNHRVFQAVGIIHIM 667



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 19/178 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F R  +++G +   + +  +G     T  +   LI     +  ++ A   F  M     R
Sbjct: 546 FCRNGDLEGAYLLFQKLEEKGYS--ATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHR 603

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            D Y Y V+I+  C+  N ++A   L +M   GF   P + T+  +I+S           
Sbjct: 604 ADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGF--IPSMSTFGRVINSL---------- 651

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
             +  R+++A  +  +M+  G VP+VV  + +++   K   I     L +D+ KKG I
Sbjct: 652 -TVNHRVFQAVGIIHIMVKIGVVPEVV--DTILNADKK--EIAAPKILVEDLMKKGHI 704


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 123/246 (50%), Gaps = 16/246 (6%)

Query: 160 RRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           +R +G+LV  ++V    +I  + +  LVN+A   + +M   R  PDV+ YN +I+    V
Sbjct: 190 KRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAV 249

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
              N A  L  +M+       P+VYT+ IL+  +CK G           ++ +A  +  +
Sbjct: 250 SKLNYAIDLFNKMKKENIN--PNVYTFNILVDGFCKEG-----------KVNDAKVVLAI 296

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+     PDVV YN L+DG C   ++ +A ++FD M   G I N   Y + +  +  +  
Sbjct: 297 MMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKM 356

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           +D+AI +  +M+     +P   +Y+ +I  LC+ GR+  A   + E+ D G  P   TY 
Sbjct: 357 VDEAINLFEEMR-CRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYS 415

Query: 398 LVCDAL 403
            + DAL
Sbjct: 416 SILDAL 421



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 136/286 (47%), Gaps = 51/286 (17%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+    +EG VN+A      M +   +PDV  YN +++  C +   NKA+ + + M   G
Sbjct: 277 LVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGG 336

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                +V  YT +++ +CK  M           + EA +LF  M  +  +P+VV Y+ LI
Sbjct: 337 --VIANVQIYTTMVNGFCKIKM-----------VDEAINLFEEMRCRKIIPNVVTYSSLI 383

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK  RI  AL+L D+M+ +G  PN VTY+S +      + +DKAI ++  ++  + G
Sbjct: 384 DGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLK--DQG 441

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARD---------------------------------- 379
           + P   +YT +I  LC++GR+ +A++                                  
Sbjct: 442 IRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKAL 501

Query: 380 -FLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
             L+++ D G +P   TY+LV  +L   +E    +  LR+ I  G+
Sbjct: 502 ALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRGL 547



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 93/184 (50%), Gaps = 16/184 (8%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
            +VT SS   LI  L + G +  AL     M      P++  Y+ +++ALC+  + +KA 
Sbjct: 375 NVVTYSS---LIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAI 431

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            LL  ++  G R  PD+YTYTILI   C+ G           R+ +A ++F  +L KG+ 
Sbjct: 432 ALLTNLKDQGIR--PDMYTYTILIKGLCQSG-----------RLEDAQNVFEDLLVKGYN 478

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
            DV AY  +I G C     ++AL L   M   GCIPN  TY   I      +E D A ++
Sbjct: 479 LDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKL 538

Query: 345 MRKM 348
           +R+M
Sbjct: 539 LREM 542



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 18/230 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + GL + + + F ++ +    P    +N +I  LC  G+ ++A    +++   G
Sbjct: 102 LINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQG 161

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F    D  +Y  LI+  CK G           RI  A  L + +  K   P+ V YN +I
Sbjct: 162 FHL--DQVSYGTLINGLCKVG-----------RITAALQLLKRVDGKLVQPNAVMYNMII 208

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLN 352
           D  CK   +  A +L+  M  K   P+  TYN+ I  +S V++++ AI++  KM  +N+N
Sbjct: 209 DNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENIN 268

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              P   ++  ++   C+ G+V +A+  LA ++     P   TY  + D 
Sbjct: 269 ---PNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDG 315



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 19/243 (7%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N  K ++D     S    G +      T ++    +  +V+EA+  F  M+  +  P+V 
Sbjct: 323 NKAKDIFD-----SMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVV 377

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            Y+ +I+ LC++G    A  L+++M   G   PP++ TY+ ++ + CK            
Sbjct: 378 TYSSLIDGLCKLGRIFYALKLVDEMHDRG--QPPNIVTYSSILDALCK-----------N 424

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             + +A  L   +  +G  PD+  Y  LI G C++ R+E A  +F+D+  KG   +   Y
Sbjct: 425 HHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAY 484

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              I+ +      DKA+ ++ KM++ N  +P + +Y  +I +L E      A   L E++
Sbjct: 485 TVMIQGFCDKGFFDKALALLSKMED-NGCIPNAKTYELVILSLFEKDENDTAEKLLREMI 543

Query: 386 DGG 388
             G
Sbjct: 544 VRG 546



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 105/224 (46%), Gaps = 14/224 (6%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P  + +N ++++L +  + + A  L +QMEL G     D +T+ ILI+ + + G+ +   
Sbjct: 59  PPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIE--SDFFTFNILINCFSQLGLNS--- 113

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                    +  +F  +L KG+ P  + +N LI G C    I +AL   D +  +G   +
Sbjct: 114 --------LSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLD 165

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           +V+Y + I     V  I  A+++++++       P +  Y  II  +C+A  V +A D  
Sbjct: 166 QVSYGTLINGLCKVGRITAALQLLKRVDG-KLVQPNAVMYNMIIDNMCKAKLVNDAFDLY 224

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           +++V     P  +TY  +    +A  + +   D   K  ++ I 
Sbjct: 225 SQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENIN 268


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 147/310 (47%), Gaps = 25/310 (8%)

Query: 125 FFDFFHNEMT-CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183
           F  F  +++T C  +  + A G+  + L  F +  ++    ++V  +S   L+K L  +G
Sbjct: 318 FKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNS---LVKGLCLQG 374

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           L+  AL     M +  C PD+  YN+VIN LC++GN + A  ++    + G+   PDV+T
Sbjct: 375 LILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL--PDVFT 432

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           +  LI  YCK           R ++  A  L   M   G  PD + YN +++G CK  ++
Sbjct: 433 FNTLIDGYCK-----------RLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKV 481

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYT 362
               E F +M  KGC PN +TYN  I  +   N++++A +++ KM     G+ P + S+ 
Sbjct: 482 NEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMS--QEGLHPDAVSFN 539

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA----LNAAEEPSLLDDGLRK 418
            +I+  C  G +  A     +L + G      T+  +  A    LN      + D+ L K
Sbjct: 540 TLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSK 599

Query: 419 RIR-DGIEYR 427
             R D   YR
Sbjct: 600 GHRADSYTYR 609



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 114/228 (50%), Gaps = 17/228 (7%)

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           I+ L E G + EA+     M+ +   PDV  YN +I  LC+     +A   L +M   G 
Sbjct: 228 IRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG- 285

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
            C PD +TY  +I  YCK  M           + EA  L +  +FKGFVPD V Y  LI+
Sbjct: 286 -CLPDDFTYNTIIDGYCKISM-----------VQEATELLKDAVFKGFVPDQVTYCSLIN 333

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN-HG 354
           G C    +ERALELF++   KG  P+ V YNS ++   +   I  A+++M +M     H 
Sbjct: 334 GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCH- 392

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            P   +Y  +I+ LC+ G + +A   + + +  G +P  +T+  + D 
Sbjct: 393 -PDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 439



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 21/249 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++  L + G V EA     ++ Q     +++ YN+ I  LC  G   +A  L++ M    
Sbjct: 192 VLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA 251

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDV TY  LI   CK  M             EA H  R M+ +G +PD   YN +I
Sbjct: 252 V---PDVVTYNTLIRGLCKKSMPQ-----------EAMHYLRRMMNQGCLPDDFTYNTII 297

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK   ++ A EL  D   KG +P++VTY S I       ++++A+E+  + Q    G
Sbjct: 298 DGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQ--AKG 355

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEP 409
           + P    Y  ++  LC  G +L A   + E+ + G  P   TY +V + L    N ++  
Sbjct: 356 IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 415

Query: 410 SLLDDGLRK 418
            +++D + K
Sbjct: 416 VVMNDAIMK 424



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 121/264 (45%), Gaps = 32/264 (12%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+ L ++ +  EA+    RM    C PD + YN +I+  C++    +A  LL+     G
Sbjct: 261 LIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKG 320

Query: 235 FRCPPDVYTYTILISSYCKYG--------MQTGCRKAIRRRIWEANHLFRLMLFKGFV-- 284
           F   PD  TY  LI+  C  G              K I+  I   N L + +  +G +  
Sbjct: 321 FV--PDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILH 378

Query: 285 --------------PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
                         PD+  YN +I+G CK   I  A  + +D   KG +P+  T+N+ I 
Sbjct: 379 ALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLID 438

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
            Y    ++D A++++ +M    +G+ P + +Y  +++ LC+AG+V E  +   E++  G 
Sbjct: 439 GYCKRLKLDSALQLVERM--WEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 496

Query: 390 VPREYTYKLVCDAL---NAAEEPS 410
            P   TY ++ +     N  EE S
Sbjct: 497 HPNPITYNILIENFCRSNKMEEAS 520



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 24/247 (9%)

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           I+     G + +A+  F RM  F C P   AYN +++AL      ++A  +  +M   G 
Sbjct: 57  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 116

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------------------RIWEANHLF 275
              PD++T+TI + S+C         + +R                        +A  LF
Sbjct: 117 S--PDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLF 174

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             ML     P++ A+N ++   CK   +  A  L   + ++G   N  TYN +IR     
Sbjct: 175 DQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEA 234

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
             + +A+ ++  M+   + VP   +Y  +I  LC+     EA  +L  +++ G +P ++T
Sbjct: 235 GRLPEAVRLVDGMR--AYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFT 292

Query: 396 YKLVCDA 402
           Y  + D 
Sbjct: 293 YNTIIDG 299



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 113/268 (42%), Gaps = 47/268 (17%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++ AL    RM ++   PD   YN V+N LC+ G  N+     ++M L G  C P+  TY
Sbjct: 446 LDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKG--CHPNPITY 503

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI ++C+             ++ EA+ +   M  +G  PD V++N LI G C+   +E
Sbjct: 504 NILIENFCR-----------SNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLE 552

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG---------- 354
            A  LF  + +KG      T+N+ I  +S    +  A ++  +M +  H           
Sbjct: 553 GAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLI 612

Query: 355 ------------------------VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                                   +P+ S++  +I++L    RV +A   +  +V  G V
Sbjct: 613 DGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVV 672

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRK 418
           P      L  D    A    L++D ++K
Sbjct: 673 PEVVDTILNADKKEIAAPKILVEDLMKK 700



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 26/204 (12%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   ++  L + G VNE   TF  M    C P+   YN++I   CR     +A  ++ 
Sbjct: 465 TITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIV 524

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR---------------------- 266
           +M   G    PD  ++  LI  +C+ G   G     ++                      
Sbjct: 525 KMSQEGLH--PDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSG 582

Query: 267 --RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              +  A  +F  ML KG   D   Y  LIDG CKT  ++RA     +M KKG IP+  T
Sbjct: 583 KLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMST 642

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKM 348
           +   I   +V + + +A+ ++  M
Sbjct: 643 FGRVINSLTVNHRVFQAVGIIHIM 666



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 19/178 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F R  +++G +   + +  +G     T  +   LI     +  ++ A   F  M     R
Sbjct: 545 FCRNGDLEGAYLLFQKLEEKGYS--ATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHR 602

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            D Y Y V+I+  C+  N ++A   L +M   GF   P + T+  +I+S           
Sbjct: 603 ADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGF--IPSMSTFGRVINSL---------- 650

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
             +  R+++A  +  +M+  G VP+VV  + +++   K   I     L +D+ KKG I
Sbjct: 651 -TVNHRVFQAVGIIHIMVKIGVVPEVV--DTILNADKK--EIAAPKILVEDLMKKGHI 703


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 142/308 (46%), Gaps = 18/308 (5%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
           F+ W      + H  ++   +  V A+      ++    DM     G +  T +   L++
Sbjct: 3   FFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDM--LAAGCVPNTYTYGYLLR 60

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
            L +     EA + F  M    C P+V++Y+++I  LCR    ++A  LL +M   G + 
Sbjct: 61  SLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQ- 119

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            P+V TY  L+S  CK G           ++ EA  LF  M+++G  PD V YN LIDG 
Sbjct: 120 -PNVVTYGSLLSGLCKMG-----------KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGF 167

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VP 356
            K   +  A  LF++M +KGCIP   TYNS +  +S   E  +   + + M  L  G VP
Sbjct: 168 SKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDM--LRQGCVP 225

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              ++  ++   C+ G ++EA     E+   G  P   +Y  +   + +  +P      L
Sbjct: 226 NIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLL 285

Query: 417 RKRIRDGI 424
           R+ IR G+
Sbjct: 286 REMIRSGV 293



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 119/260 (45%), Gaps = 16/260 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           RG  V    + L +M   G+   V T     L+  L + G + EA+  F RM    C PD
Sbjct: 99  RGQKVDEAAELLNEMIDGGHQPNVVTYGS--LLSGLCKMGKLKEAVDLFSRMVYRGCPPD 156

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              YNV+I+   + G+  +A  L E+M   G  C P V+TY  L+S + + G        
Sbjct: 157 GVVYNVLIDGFSKKGDMGEAYRLFEEMLEKG--CIPTVFTYNSLLSGFSRKG-------- 206

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
                     LF+ ML +G VP++  +N L+DG CK   +  A  LF +M   GC P+ V
Sbjct: 207 ---EFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVV 263

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           +YN+ IR      +  +A  ++R+M     G P   SY  +I    ++G +  A     E
Sbjct: 264 SYNTLIRGMCSKGKPHEAQRLLREMIRSGVG-PDIVSYNILIDGYSKSGALDHAIKLFYE 322

Query: 384 LVDGGSVPREYTYKLVCDAL 403
           +   G  P  ++Y  + D L
Sbjct: 323 IPKSGLEPDAFSYSTIIDCL 342



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 120/258 (46%), Gaps = 16/258 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F++  ++   +   ++M  +G   + T  +   L+     +G      + F  M +  C 
Sbjct: 167 FSKKGDMGEAYRLFEEMLEKGC--IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCV 224

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+++ +N +++  C++G+  +A  L   +E+    CPPDV +Y  LI   C  G      
Sbjct: 225 PNIFTFNNLLDGFCKMGDMVEAHRLF--LEMRSLGCPPDVVSYNTLIRGMCSKG------ 276

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                +  EA  L R M+  G  PD+V+YN LIDG  K+  ++ A++LF ++ K G  P+
Sbjct: 277 -----KPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPD 331

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             +Y++ I       ++  A  + + M   N   P ++   P++  LC   R+ E+ +  
Sbjct: 332 AFSYSTIIDCLCRAGKVGAAFVVFKDMIA-NGSAPDAAVVIPLVIGLCRGERLTESCELF 390

Query: 382 AELVDGGSVPREYTYKLV 399
             +V    VP    Y L+
Sbjct: 391 QAMVKFECVPLIPEYNLL 408



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 94/234 (40%), Gaps = 34/234 (14%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F+R      +    KDM R+G    + T     L+    + G + EA   F  M+   C 
Sbjct: 202 FSRKGEFGRVQSLFKDMLRQGCVPNIFT--FNNLLDGFCKMGDMVEAHRLFLEMRSLGCP 259

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM----- 256
           PDV +YN +I  +C  G  ++A+ LL +M   G    PD+ +Y ILI  Y K G      
Sbjct: 260 PDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGV--GPDIVSYNILIDGYSKSGALDHAI 317

Query: 257 -------QTG---------------CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                  ++G               CR     ++  A  +F+ M+  G  PD      L+
Sbjct: 318 KLFYEIPKSGLEPDAFSYSTIIDCLCRAG---KVGAAFVVFKDMIANGSAPDAAVVIPLV 374

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            G C+  R+  + ELF  M K  C+P    YN  +         D   E+  ++
Sbjct: 375 IGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHEL 428



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L++M R G G  + + ++  LI    + G ++ A+  FY + +    PD ++Y+ +I+ 
Sbjct: 284 LLREMIRSGVGPDIVSYNI--LIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDC 341

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LCR G    A  + + M   G    PD      L+   C+             R+ E+  
Sbjct: 342 LCRAGKVGAAFVVFKDMIANG--SAPDAAVVIPLVIGLCR-----------GERLTESCE 388

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
           LF+ M+    VP +  YN L+   CK  R +   E+F ++ ++G  P+
Sbjct: 389 LFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPD 436


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 166/384 (43%), Gaps = 34/384 (8%)

Query: 67  GRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTL-----GLNKATEFYHW 121
           G     R    +   I K+    +AN +L   P+    P  V       GL  A  +   
Sbjct: 281 GCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEA 340

Query: 122 VERFFDFFH-----NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLI 176
            E   + F      +++T   +   F +   V  + + L+ M   G    V T   T +I
Sbjct: 341 EELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVIT--YTTVI 398

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
               +EGL++EA+     M    C+P+  +Y +V+  LC  G +  A  L+ QM   G  
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG-- 456

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           CPP+  T+  LI+  CK G+           + +A  L + ML  G  PD+++Y+ +IDG
Sbjct: 457 CPPNPVTFNTLINFLCKKGL-----------VEQAIELLKQMLVNGCSPDLISYSTVIDG 505

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
             K  + E ALEL + M  KG  PN + Y+S     S    ++K I+M   +++      
Sbjct: 506 LGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIR-S 564

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            +  Y  +I +LC+      A DF A +V  G +P E TY ++   L +        +GL
Sbjct: 565 DAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLAS--------EGL 616

Query: 417 RKRIRDGIEYRFRQVMKVKPIMKH 440
            K  ++ +     +    K +M+H
Sbjct: 617 AKEAQELLSELCSRGALRKHLMRH 640



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 51/301 (16%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           +    G  + T +   ++  + E+G V+EA+    ++  F C  D+ +YN V+  LC   
Sbjct: 171 AMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAK 230

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
            +     L+++M      C P++ T+  LI   C+ G+          R+ E   +   M
Sbjct: 231 RWGDVEELMDEMVR--VDCAPNIVTFNTLIGYLCRNGL--------FERVHE---VLAQM 277

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIE---------------------------------- 304
              G  PD+  Y  +IDG CK   +E                                  
Sbjct: 278 SEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERW 337

Query: 305 -RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYT 362
             A EL  +M +K C  + VT+N  + ++     +D+ IE++ +M  L+HG +P   +YT
Sbjct: 338 KEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM--LSHGCMPDVITYT 395

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I+  C+ G + EA   L  +   G  P   +Y +V   L +A      ++ + + I+ 
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 423 G 423
           G
Sbjct: 456 G 456



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 16/234 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++ L   G + +AL     M    C P    Y+V++ A CR G F  +  +LE M   G
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  D     +++++ C+ G            + EA  L R + F G   D+V+YN ++
Sbjct: 177 --CTLDTGNCNLVLNAICEQGC-----------VDEAVGLLRKLAFFGCEADIVSYNAVL 223

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   R     EL D+M +  C PN VT+N+ I Y       ++  E++ +M    HG
Sbjct: 224 KGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS--EHG 281

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
             P    Y  II  +C+ G +  A + L  +   G  P    Y  V   L +AE
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+   +  ++ G C   RI  ALE+ D+M+ KGC P    Y+  +           ++ +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           +  M      + T +    +++A+CE G V EA   L +L   G      +Y  V   L 
Sbjct: 169 LEAMHAKGCTLDTGNCNL-VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLC 227

Query: 405 AAEEPSLLDDGLRKRIR 421
            A+    +++ + + +R
Sbjct: 228 MAKRWGDVEELMDEMVR 244


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 166/384 (43%), Gaps = 34/384 (8%)

Query: 67  GRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTL-----GLNKATEFYHW 121
           G     R    +   I K+    +AN +L   P+    P  V       GL  A  +   
Sbjct: 281 GCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEA 340

Query: 122 VERFFDFFH-----NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLI 176
            E   + F      +++T   +   F +   V  + + L+ M   G    V T   T +I
Sbjct: 341 EELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVIT--YTTVI 398

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
               +EGL++EA+     M    C+P+  +Y +V+  LC  G +  A  L+ QM   G  
Sbjct: 399 NGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG-- 456

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           CPP+  T+  LI+  CK G+           + +A  L + ML  G  PD+++Y+ +IDG
Sbjct: 457 CPPNPVTFNTLINFLCKKGL-----------VEQAIELLKQMLVNGCSPDLISYSTVIDG 505

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
             K  + E ALEL + M  KG  PN + Y+S     S    ++K I+M   +++      
Sbjct: 506 LGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIR-S 564

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            +  Y  +I +LC+      A DF A +V  G +P E TY ++   L +        +GL
Sbjct: 565 DAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLAS--------EGL 616

Query: 417 RKRIRDGIEYRFRQVMKVKPIMKH 440
            K  ++ +     +    K +M+H
Sbjct: 617 AKEAQELLSELCSRGALRKHLMRH 640



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 51/301 (16%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           +    G  + T +   ++  + E+G V+EA+    ++  F C  D+ +YN V+  LC   
Sbjct: 171 AMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAK 230

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
            +     L+++M      C P++ T+  LI   C+ G+          R+ E   +   M
Sbjct: 231 RWGDVEELMDEMVR--VDCAPNIVTFNTLIGYLCRNGL--------FERVHE---VLAQM 277

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIE---------------------------------- 304
              G  PD+  Y  +IDG CK   +E                                  
Sbjct: 278 SEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERW 337

Query: 305 -RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYT 362
             A EL  +M +K C  + VT+N  + ++     +D+ IE++ +M  L+HG +P   +YT
Sbjct: 338 KEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM--LSHGCMPDVITYT 395

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I+  C+ G + EA   L  +   G  P   +Y +V   L +A      ++ + + I+ 
Sbjct: 396 TVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQ 455

Query: 423 G 423
           G
Sbjct: 456 G 456



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 16/234 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++ L   G + +AL     M    C P    Y+V++ A CR G F  +  +LE M   G
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  D     +++++ C+ G            + EA  L R + F G   D+V+YN ++
Sbjct: 177 --CTLDTGNCNLVLNAICEQGC-----------VDEAVGLLRKLAFFGCEADIVSYNAVL 223

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   R     EL D+M +  C PN VT+N+ I Y       ++  E++ +M    HG
Sbjct: 224 KGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMS--EHG 281

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
             P    Y  II  +C+ G +  A + L  +   G  P    Y  V   L +AE
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAE 335



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+   +  ++ G C   RI  ALE+ D+M+ KGC P    Y+  +           ++ +
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           +  M      + T +    +++A+CE G V EA   L +L   G      +Y  V   L 
Sbjct: 169 LEAMHAKGCTLDTGNCNL-VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLC 227

Query: 405 AAEEPSLLDDGLRKRIR 421
            A+    +++ + + +R
Sbjct: 228 MAKRWGDVEELMDEMVR 244


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 132/273 (48%), Gaps = 18/273 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V  +  N++     ++ M  RG    +   + T LI    ++G +++AL     MKQ R 
Sbjct: 339 VMCKAGNLERAVTLVRQMRERG--LQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRI 396

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P V  YN +IN  C VG  ++AR LL +ME  G +  PDV TY+ +IS+YCK      C
Sbjct: 397 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLK--PDVVTYSTIISAYCK-----NC 449

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                     A  L + ML KG +PD + Y+ LI   C   R+  A  LF +M K G  P
Sbjct: 450 ------DTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQP 503

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
           +  TY S I  +     ++ A+ +  KM  +  GV P   +Y+ +I+ L ++ R +EA+ 
Sbjct: 504 DEFTYTSLIDGHCKEGNVESALSLHDKM--VKAGVLPDVVTYSVLINGLSKSARAMEAQQ 561

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
            L +L     +P    Y  +      AE  S+L
Sbjct: 562 LLFKLYHEDPIPANTKYDALMHCCRKAELKSVL 594



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 132/292 (45%), Gaps = 28/292 (9%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
            RG+  + L   L+DM   G G  V T +   L+      G V+ A      M++   +P
Sbjct: 202 GRGHRKEAL-SILRDMRGAGCGPNVVTYNT--LVAAFFRAGEVDGAERLVGMMREGGLKP 258

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           ++  +N ++N +C+ G    AR + ++M   G    PD  +Y  L+  YCK     GC  
Sbjct: 259 NLVTFNSMVNGMCKAGKMEDARKVFDEMVREGL--APDGVSYNTLVGGYCK----AGCSH 312

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                  EA  +F  M  KG +PDVV +  LI   CK   +ERA+ L   M ++G   N 
Sbjct: 313 -------EALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNE 365

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           VT+ + I  +     +D A+  +R M+      P+   Y  +I+  C  GR+ EAR+ L 
Sbjct: 366 VTFTALIDGFCKKGFLDDALLAVRGMKQCRIK-PSVVCYNALINGYCMVGRMDEARELLH 424

Query: 383 ELVDGGSVPREYTYKLV-------CDALNAAE-EPSLLDDGLRKRIRDGIEY 426
           E+   G  P   TY  +       CD  +A E    +L+ G+   + D I Y
Sbjct: 425 EMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGV---LPDAITY 473



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 110/216 (50%), Gaps = 19/216 (8%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+VY YN+++ ALC  G+  +A  +L  M   G  C P+V TY  L++++ + G   G  
Sbjct: 188 PNVYTYNILVRALCGRGHRKEALSILRDMR--GAGCGPNVVTYNTLVAAFFRAGEVDG-- 243

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                    A  L  +M   G  P++V +N +++G CK  ++E A ++FD+M ++G  P+
Sbjct: 244 ---------AERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPD 294

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            V+YN+ +  Y       +A+ +  +M     G+ P   ++T +IH +C+AG +  A   
Sbjct: 295 GVSYNTLVGGYCKAGCSHEALSVFAEMT--QKGIMPDVVTFTSLIHVMCKAGNLERAVTL 352

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
           + ++ + G    E T+  + D      +   LDD L
Sbjct: 353 VRQMRERGLQMNEVTFTALIDGFC---KKGFLDDAL 385



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 9/133 (6%)

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           +  A   F  ML  G  P+V  YN L+   C     + AL +  DM   GC PN VTYN+
Sbjct: 171 LTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNT 230

Query: 328 FIRYYSVVNEIDKA---IEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAE 383
            +  +    E+D A   + MMR+      G+ P   ++  +++ +C+AG++ +AR    E
Sbjct: 231 LVAAFFRAGEVDGAERLVGMMRE-----GGLKPNLVTFNSMVNGMCKAGKMEDARKVFDE 285

Query: 384 LVDGGSVPREYTY 396
           +V  G  P   +Y
Sbjct: 286 MVREGLAPDGVSY 298



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 44/224 (19%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + + LI+VL  E  +++A   F  M +   +PD + Y  +I+  C+ GN   A
Sbjct: 465 GVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESA 524

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG--------------------------MQ 257
             L ++M   G    PDV TY++LI+   K                            + 
Sbjct: 525 LSLHDKMVKAGVL--PDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALM 582

Query: 258 TGCRKAIRRRIW-------------EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             CRKA  + +              EA+ +++ ML + +  D   Y+ LI G C+   + 
Sbjct: 583 HCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVM 642

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYY---SVVNEIDKAIEMM 345
           +AL     M + G  PN  +  S IR      +V E D+ I+ +
Sbjct: 643 KALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQL 686



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           SV  L+K    +GL+NEA   +  M       D   Y+V+I+  CR GN  KA    +QM
Sbjct: 592 SVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQM 651

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              GF   P+  +   LI    + GM           + EA+ + + +L    + D  A 
Sbjct: 652 LQGGF--APNSTSTISLIRGLFENGM-----------VVEADQVIQQLLNYCSLADAEAS 698

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             LID       ++  L++   M K G +P+
Sbjct: 699 KALIDLNLNEGNVDAVLDVLHGMAKDGLLPS 729


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 18/263 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            ++   +K     L++M +      LV  S+   LI  L ++G V++AL    ++ +   
Sbjct: 170 LSKNGQIKAALHLLQEMEKSSVQPNLVMYSA---LIDGLCKDGFVSDALGLCSQIGERGI 226

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
             D   YN +I+  C VG + +   LL +M        PD YT+ ILI + CK G     
Sbjct: 227 LLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVD--PDDYTFNILIDALCKEG----- 279

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 RI EA  +  +M  +G  PD+V YN L++G C    +  A ELF+ M K+G  P
Sbjct: 280 ------RILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEP 333

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + + YN  I  Y     +D+A+ + +++ N N  VPT +SY  +I  LC +GR+   +  
Sbjct: 334 DVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL-VPTIASYNSLIDGLCNSGRISHVKKL 392

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L E+      P   TY ++ DAL
Sbjct: 393 LDEMHGSAQPPDVVTYNILIDAL 415



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 122/265 (46%), Gaps = 20/265 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L+   +   LI      G   E      +M +    PD Y +N++I+ALC+ G   +A
Sbjct: 225 GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA 284

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           + +L  M   G +  PD+ TY  L+  YC            R  + EA  LF  M+ +G 
Sbjct: 285 QGVLAMMSKRGEK--PDIVTYNALMEGYCS-----------RENVHEARELFNRMVKRGL 331

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PDV+ YN LIDG CKT  ++ A+ LF ++  K  +P   +YNS I        I    +
Sbjct: 332 EPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKK 391

Query: 344 MMRKMQNLNHGV---PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           ++ +M    HG    P   +Y  +I ALC+ GR+LEA   L  ++  G  P   TY  + 
Sbjct: 392 LLDEM----HGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMM 447

Query: 401 DALNAAEEPSLLDDGLRKRIRDGIE 425
           D        ++  D   + ++ G+E
Sbjct: 448 DGYCLRNNVNVAKDIFNRMVKSGLE 472



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 122/262 (46%), Gaps = 22/262 (8%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
            R ++VK L D        G+ +     +   LI  L +EG + EAL     M +   +P
Sbjct: 384 GRISHVKKLLD-----EMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKP 438

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           ++  YN +++  C   N N A+ +  +M   G    PD+  Y +LI+ YCK  M      
Sbjct: 439 NIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLE--PDILNYNVLINGYCKTEM------ 490

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                + EA  LF+ M  K  +PD+ +YN LIDG C   RI    EL D+M   G  P+ 
Sbjct: 491 -----VDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDV 545

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           +TYN  +  +      DKAI + R++     G+ P   +   I+  LC+  ++  A D L
Sbjct: 546 ITYNILLDAFCKTQPFDKAISLFRQIV---EGIWPDFYTNHAIVDNLCKGEKLKMAEDAL 602

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
             L+  G  P   TY ++ +AL
Sbjct: 603 KHLLMHGCSPNVQTYTILINAL 624



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 14/225 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P++  +N +IN  C  G   KA    + +   G+    D +TY  LI+   K G     
Sbjct: 122 QPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLF--DQFTYGTLINGLSKNG----- 174

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 +I  A HL + M      P++V Y+ LIDG CK   +  AL L   + ++G + 
Sbjct: 175 ------QIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILL 228

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + VTYNS I     V    +  +++ KM   N   P   ++  +I ALC+ GR+LEA+  
Sbjct: 229 DAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVD-PDDYTFNILIDALCKEGRILEAQGV 287

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           LA +   G  P   TY  + +   + E      +   + ++ G+E
Sbjct: 288 LAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLE 332



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 110/248 (44%), Gaps = 17/248 (6%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           NNV    D    M + G    +   +V  LI    +  +V+EA+  F  M+     PD+ 
Sbjct: 454 NNVNVAKDIFNRMVKSGLEPDILNYNV--LINGYCKTEMVDEAIVLFKEMRHKNLIPDIA 511

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           +YN +I+ LC +G     + LL++M   G    PDV TY IL+ ++CK            
Sbjct: 512 SYNSLIDGLCNLGRIPHVQELLDEMCDSGQS--PDVITYNILLDAFCK-----------T 558

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           +   +A  LFR  + +G  PD    + ++D  CK  +++ A +    +   GC PN  TY
Sbjct: 559 QPFDKAISLFR-QIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTY 617

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              I          +A+ ++ KM++ N   P + ++  II  L +     +A     E++
Sbjct: 618 TILINALCKDGSFGEAMLLLSKMED-NDRPPDAITFEIIIGVLLQRNETDKAEKLREEMI 676

Query: 386 DGGSVPRE 393
             G V  E
Sbjct: 677 ARGLVNIE 684



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 114/241 (47%), Gaps = 14/241 (5%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A+  F RM +    P    ++ ++ A+ R+G++  A  L  Q++  G    P + T+
Sbjct: 36  VDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGIS--PSIATF 93

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           TILI+ Y             +     A  L   +L  G+ P++V +N +I+G C    I 
Sbjct: 94  TILINCYFH-----------QSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIF 142

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +AL+   ++  +G + ++ TY + I   S   +I  A+ ++++M+  +   P    Y+ +
Sbjct: 143 KALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEK-SSVQPNLVMYSAL 201

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           I  LC+ G V +A    +++ + G +    TY  + D   +      +   L K +R+ +
Sbjct: 202 IDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENV 261

Query: 425 E 425
           +
Sbjct: 262 D 262


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 130/269 (48%), Gaps = 24/269 (8%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  + FAR        D + +MSRRG    V T ++  L+  L + GL+ EA    + 
Sbjct: 401 CKEGSLSFAR--------DLVNEMSRRGCEPNVITYAI--LVNGLCKAGLLEEAGLVLHE 450

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M       +   YN +I ALCR    + A  LL +M   G  C PD++TY  LI   CK 
Sbjct: 451 MSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKG--CKPDLFTYNSLIYGLCKV 508

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                       RI EA  LF  ML  G V + V YN LI    +    ++AL L +DM 
Sbjct: 509 -----------DRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDML 557

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
            +GC  +++TYN  I+ +  V  I+K +E+  +M     G  T S    +I+ LC+ G+V
Sbjct: 558 FRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISC-NIMINGLCKVGKV 616

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDAL 403
             A +FL + ++ G VP   TY  V + L
Sbjct: 617 DNAFEFLRDAINRGFVPDIVTYNSVLNGL 645



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 128/274 (46%), Gaps = 30/274 (10%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           N V      L+DM++ G    V  S V   LI  L ++  V+EAL     M    C PDV
Sbjct: 232 NEVDSACSLLRDMTKHG---CVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDV 288

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             +N VI+ LC+V   + A  L+++M L GF   PD  TY  L+   C+ G     RK +
Sbjct: 289 QTFNDVIHGLCKVNKIHDATKLVDRMLLRGFY--PDNMTYGFLLHGLCRIGKLNEARKIL 346

Query: 265 RR--------------------RIWEA-NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
            +                    ++ EA + L   M+  GF PD+  YN L+ G CK   +
Sbjct: 347 IKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSL 406

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YT 362
             A +L ++M+++GC PN +TY   +        +++A  ++ +M     G+  +S  Y 
Sbjct: 407 SFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMS--ARGLTINSVIYN 464

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +I ALC   +V  A + L+E+   G  P  +TY
Sbjct: 465 CLICALCRKEKVHVALNLLSEMCTKGCKPDLFTY 498



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 100/209 (47%), Gaps = 20/209 (9%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G +    +   LI  L   G   +AL     M    C  D   YN +I A C+VGN  K
Sbjct: 524 DGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEK 583

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
              L EQM + G     D  +  I+I+  CK G           ++  A    R  + +G
Sbjct: 584 GLELYEQMIMDGL--GADTISCNIMINGLCKVG-----------KVDNAFEFLRDAINRG 630

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY---SVVNEID 339
           FVPD+V YN +++G CK  RI+ AL LFD +  +G  P+  TYN+FI +     +VN  D
Sbjct: 631 FVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVN--D 688

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
             +   R ++  N  VP++ ++  +++ L
Sbjct: 689 ACLFFYRGIE--NGFVPSNLTWNVLVYTL 715



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 125/276 (45%), Gaps = 24/276 (8%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +   GN  +   +   DM  +G    V T  +  ++K L     V+ A +    M +  C
Sbjct: 192 ILVTGNCPQVATNVFYDMLSKGVSPTVFTFGI--VMKALCMFNEVDSACSLLRDMTKHGC 249

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+   Y  +I+AL +    ++A  LLE+M + G  C PDV T+  +I   CK       
Sbjct: 250 VPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMG--CMPDVQTFNDVIHGLCKV------ 301

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 +I +A  L   ML +GF PD + Y  L+ G C+  ++  A ++   + K  C P
Sbjct: 302 -----NKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKI---LIKIPC-P 352

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
           N    N+ I  Y +  ++ +A   + +   +N G  P   +Y  ++H LC+ G +  ARD
Sbjct: 353 NNAILNTLINGYVMSGQLKEAQSFLNETM-INFGFQPDIFTYNILMHGLCKEGSLSFARD 411

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAA---EEPSLL 412
            + E+   G  P   TY ++ + L  A   EE  L+
Sbjct: 412 LVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLV 447



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 107/239 (44%), Gaps = 19/239 (7%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A   FY M      P V+ + +V+ ALC     + A  LL  M   G  C P+   Y  L
Sbjct: 202 ATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHG--CVPNSIVYQTL 259

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I +  +           + ++ EA  L   M   G +PDV  +N +I G CK  +I  A 
Sbjct: 260 IHALSQ-----------KNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDAT 308

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           +L D M  +G  P+ +TY   +     + ++++A +++ K+       P ++    +I+ 
Sbjct: 309 KLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP-----CPNNAILNTLING 363

Query: 368 LCEAGRVLEARDFLAE-LVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
              +G++ EA+ FL E +++ G  P  +TY ++   L      S   D + +  R G E
Sbjct: 364 YVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCE 422


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 126/262 (48%), Gaps = 16/262 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R  +     D L+ M  R     V T S   +I  L  +G ++ A++ F  M+    +
Sbjct: 203 ICRSGDTSLALDLLRKMEERNVKADVFTYST--IIDSLCRDGCIDAAISLFKEMETKGIK 260

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
             V  YN ++  LC+ G +N    LL+ M        P+V T+ +L+  + K G      
Sbjct: 261 SSVVTYNSLVRGLCKAGKWNDGALLLKDM--VSREIVPNVITFNVLLDVFVKEG------ 312

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EAN L++ M+ +G  P+++ YN L+DG C   R+  A  + D M +  C P+
Sbjct: 313 -----KLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VT+ S I+ Y +V  +D  +++ R +      V  + +Y+ ++   C++G++  A +  
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGL-VANAVTYSILVQGFCQSGKIKLAEELF 426

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+V  G +P   TY ++ D L
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGL 448



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 24/288 (8%)

Query: 142 FARGNNVKGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
             RG    G W+     LKDM  R     V T +V  L+ V  +EG + EA   +  M  
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV--LLDVFVKEGKLQEANELYKEMIT 326

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
               P++  YN +++  C     ++A  +L+ M     +C PD+ T+T LI  YC     
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN--KCSPDIVTFTSLIKGYC----- 379

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                 + +R+ +   +FR +  +G V + V Y+ L+ G C++ +I+ A ELF +M   G
Sbjct: 380 ------MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPIIHALCEAGRVL 375
            +P+ +TY   +       +++KA+E+   +Q   ++ G+     YT II  +C+ G+V 
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVM---YTTIIEGMCKGGKVE 490

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           +A +    L   G  P   TY ++   L      S  +  LRK   DG
Sbjct: 491 DAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 538



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 109/239 (45%), Gaps = 18/239 (7%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++A+A F  M + R  P +  ++   +A+ R   FN      +Q+EL G     ++YT  
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGI--AHNIYTLN 127

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           I+I+ +C+      C K      +  + L ++M   G+ PD   +N LI G     ++  
Sbjct: 128 IMINCFCR------CCKTC----FAYSVLGKVMKL-GYEPDTTTFNTLIKGLFLEGKVSE 176

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A+ L D M + GC P+ VTYNS +       +   A++++RKM+  N       +Y+ II
Sbjct: 177 AVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADV-FTYSTII 235

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRI 420
            +LC  G +  A     E+   G      TY    + +C A    +   LL D + + I
Sbjct: 236 DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 20/243 (8%)

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           +++S+RG      T S+  L++   + G +  A   F  M      PDV  Y ++++ LC
Sbjct: 392 RNISKRGLVANAVTYSI--LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC 449

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
             G   KA  + E  +L   +    +  YT +I   CK G           ++ +A +LF
Sbjct: 450 DNGKLEKALEIFE--DLQKSKMDLGIVMYTTIIEGMCKGG-----------KVEDAWNLF 496

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             +  KG  P+V+ Y  +I G CK   +  A  L   M + G  PN  TYN+ IR +   
Sbjct: 497 CSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRD 556

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
            ++  + +++ +M++       +SS   +I  L  A + L  R  L++    GS  R+  
Sbjct: 557 GDLTASAKLIEEMKSCGFSAD-ASSIKMVIDMLLSAMKRLTLRYCLSK----GSKSRQDL 611

Query: 396 YKL 398
            +L
Sbjct: 612 LEL 614


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 20/291 (6%)

Query: 108 VTLG-LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL 166
           + LG L +AT+ +  ++RF   F    +C  +   FA+     G+  F KDM   G+   
Sbjct: 74  IDLGMLEEATQCFSKMKRF-RVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPT 132

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           V T ++  +I  + +EG +  A   F  MK     PD   YN +I+   +VG  +   + 
Sbjct: 133 VFTYNI--MIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYF 190

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
            E+M+     C PDV TY  LI+ +CK G           ++ +    +R M   G  P+
Sbjct: 191 FEEMK--SMSCEPDVITYNSLINCFCKSG-----------KLPKGLEFYREMKQSGLKPN 237

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           VV+Y+ L+D  CK   +++A++ + DM + G +PN  TY S +     +  +  A  +  
Sbjct: 238 VVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLAN 297

Query: 347 KMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +M  L  GV  +  +YT +I  LC+A R+ EA     ++V  G +P   +Y
Sbjct: 298 EM--LEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASY 346



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 114/229 (49%), Gaps = 16/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L  VL + G++ EA   F +MK+FR  P   + N +++   ++G  +  +   + M   G
Sbjct: 69  LFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAG 128

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P V+TY I+I    K G            I  A  LF  M F+G +PD V YN +I
Sbjct: 129 SK--PTVFTYNIMIDCMWKEG-----------DIEAARGLFEEMKFRGLIPDTVTYNSMI 175

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K  R++  +  F++M    C P+ +TYNS I  +    ++ K +E  R+M+    G
Sbjct: 176 DGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMK--QSG 233

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + P   SY+ ++ A C+   + +A  F  ++   G VP E+TY  + DA
Sbjct: 234 LKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDA 282



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 119/237 (50%), Gaps = 19/237 (8%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           KGL +F ++M + G    V   S + L+    +E ++ +A+  +  M++    P+ + Y 
Sbjct: 221 KGL-EFYREMKQSGLKPNVV--SYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYT 277

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
            +++A C++GN + A  L  +M   G     +V TYT LI   C              R+
Sbjct: 278 SLVDANCKIGNLSDAFRLANEMLEVGVEW--NVVTYTALIDGLCD-----------AERM 324

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            EA  LF  M+  G +P++ +YN LI G  K   ++RALEL +++  +G  P+ + Y +F
Sbjct: 325 KEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTF 384

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAEL 384
           I     + +I+ A  +M +MQ   +G+  ++  YT ++ A  ++G   E    L E+
Sbjct: 385 IWGLCGLEKIEAAKVVMNEMQ--ENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEM 439



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 94/209 (44%), Gaps = 13/209 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +  A      M++   + +   Y  +++A  + GN  +   LLE+M+         V T+
Sbjct: 394 IEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVT--VVTF 451

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            +LI   CK        K + + I   ++  R+    G  P+   Y  +IDG CK  +++
Sbjct: 452 CVLIDGLCK-------NKLVSKAI---DYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVK 501

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  LF+ M ++G +P+R  Y S +        + +A+ +  KM  +   +    +YT +
Sbjct: 502 AATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDL-LAYTSL 560

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPRE 393
           +    +  ++ +AR FL E++    +P E
Sbjct: 561 VWGFSQCNQLQKARSFLEEMIGEEILPDE 589


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 122/267 (45%), Gaps = 29/267 (10%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+G      +   LIK     G++++A+  F  M+    +P V  Y  VI ALCR+G  +
Sbjct: 389 GDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMD 448

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAI----- 264
            A     QM   G    PD Y Y  LI  +C +G            M  G R  I     
Sbjct: 449 DAMEKFNQMIDQGV--VPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGS 506

Query: 265 -------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    R+ +A ++F L +  G  PD V YN L+DG C   ++E+AL +FD M   G
Sbjct: 507 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 566

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLE 376
             PN V Y + +  Y  +  ID+ + + R+M  L  G+ P++  Y  II  L EAGR + 
Sbjct: 567 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREM--LQKGIKPSTILYNIIIDGLFEAGRTVP 624

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A+    E+ + G    + TY +V   L
Sbjct: 625 AKVKFHEMTESGIAMNKCTYSIVLRGL 651



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 128/265 (48%), Gaps = 20/265 (7%)

Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+K   E    +EAL    +R  +  C PDV++YN+++ +LC  G   +A  LL  M   
Sbjct: 154 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEG 213

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C PDV  Y  +I  + K G            + +A  LF+ M+ +G  PD+V Y+ +
Sbjct: 214 GTVCSPDVVAYNTVIDGFFKEG-----------DVNKACDLFKEMVQRGIPPDLVTYSSV 262

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +   CK   +++A      M  KG +P+  TYN+ I  YS   +  +A+ + ++M+    
Sbjct: 263 VHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRR-QS 321

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
            +P   +   ++ +LC+ G++ EARD    +   G  P  ++Y ++ +    A +  L+D
Sbjct: 322 ILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGY--ATKGCLVD 379

Query: 414 --DGLRKRIRDGIE---YRFRQVMK 433
             D     + DGI    Y F  ++K
Sbjct: 380 MTDLFDLMLGDGIAPDIYTFNVLIK 404



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 118/236 (50%), Gaps = 18/236 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL+ M  +G   L    +   LI      G   EA+  F  M++    PDV A N ++ +
Sbjct: 278 FLRQMVNKG--VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGS 335

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+ G   +AR + + M + G    PDV++YTI+++ Y       GC       + +   
Sbjct: 336 LCKYGKIKEARDVFDTMAMKGQN--PDVFSYTIMLNGYA----TKGC-------LVDMTD 382

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF LML  G  PD+  +N LI        +++A+ +F++M   G  P+ VTY + I    
Sbjct: 383 LFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALC 442

Query: 334 VVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            + ++D A+E   +M  ++ G VP   +Y  +I   C  G +L+A++ ++E+++ G
Sbjct: 443 RIGKMDDAMEKFNQM--IDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG 496



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 125/280 (44%), Gaps = 29/280 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L + G V +A   F         PD   YN++++  C VG   KA  + + M   G
Sbjct: 507 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 566

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V  Y  L++ YCK G           RI E   LFR ML KG  P  + YN +I
Sbjct: 567 IE--PNVVGYGTLVNGYCKIG-----------RIDEGLSLFREMLQKGIKPSTILYNIII 613

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  +  R   A   F +M + G   N+ TY+  +R        D+AI + ++++ +N  
Sbjct: 614 DGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVK 673

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
           +   +  T +I  + +  RV EA+D  A +   G VP   TY ++          +LL +
Sbjct: 674 IDIITLNT-MIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMI--------TNLLKE 724

Query: 415 GLRKRIRDGIEYRFRQVMKVKP---IMKH--KELLKCGEI 449
           GL +   D   +   Q    +P   ++ H  +ELLK  EI
Sbjct: 725 GLVEEAED--MFSSMQNAGCEPDSRLLNHVVRELLKKNEI 762



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 13/178 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L E G    A   F+ M +     +   Y++V+  L +   F++A FL +  EL  
Sbjct: 612 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFK--ELRA 669

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                D+ T   +I+       QT       RR+ EA  LF  +   G VP  V Y+ +I
Sbjct: 670 MNVKIDIITLNTMIAGM----FQT-------RRVEEAKDLFASISRSGLVPCAVTYSIMI 718

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
               K   +E A ++F  M   GC P+    N  +R     NEI +A   + K+   N
Sbjct: 719 TNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERN 776



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 80/188 (42%), Gaps = 13/188 (6%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P  YTY IL+           C +A R  +  A   F  +L  G   D +  + L+ G C
Sbjct: 111 PTSYTYAILMDC---------CTRAHRPELALA--FFGQLLRTGLRVDAIIASHLLKGFC 159

Query: 299 KTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-QNLNHGVP 356
           +  R + AL+ L     + GC+P+  +YN  ++      +  +A +++R M +      P
Sbjct: 160 EAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSP 219

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              +Y  +I    + G V +A D   E+V  G  P   TY  V  AL  A      +  L
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279

Query: 417 RKRIRDGI 424
           R+ +  G+
Sbjct: 280 RQMVNKGV 287


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 127/262 (48%), Gaps = 16/262 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R  +    +D L+ M  R     V T S   +I  L  +G ++ A++ F  M+    +
Sbjct: 203 ICRSGDTSLAFDMLRKMEERNVKADVFTYST--IIDSLCRDGCIDAAISLFKEMETKGIK 260

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
             V  YN ++  LC+ G +N    LL+ M        P+V T+ +L+  + K G      
Sbjct: 261 SSVVTYNSLVRGLCKAGKWNDGALLLKDM--VSREIVPNVITFNVLLDVFVKEG------ 312

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EAN L++ M+ +G  P+++ YN L+DG C   R+  A  + D M +  C P+
Sbjct: 313 -----KLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VT+ S I+ Y +V  +D  +++ R +      V  + +Y+ ++   C++G++  A +  
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGL-VANAVTYSILVQGFCQSGKIKLAEELF 426

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+V  G +P   TY ++ D L
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGL 448



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 24/288 (8%)

Query: 142 FARGNNVKGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
             RG    G W+     LKDM  R     V T +V  L+ V  +EG + EA   +  M  
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV--LLDVFVKEGKLQEANELYKEMIT 326

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
               P++  YN +++  C     ++A  +L+ M     +C PD+ T+T LI  YC     
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN--KCSPDIVTFTSLIKGYC----- 379

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                 + +R+ +   +FR +  +G V + V Y+ L+ G C++ +I+ A ELF +M   G
Sbjct: 380 ------MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPIIHALCEAGRVL 375
            +P+ +TY   +       +++KA+E+   +Q   ++ G+     YT II  +C+ G+V 
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVM---YTTIIEGMCKGGKVE 490

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           +A +    L   G  P   TY ++   L      S  +  LRK   DG
Sbjct: 491 DAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 538



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 18/239 (7%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++A+A F  M + R  P +  ++   +A+ R   FN      +Q+EL G     ++YT  
Sbjct: 70  DDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGI--AHNIYTLN 127

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           I+I+ +C+      C+      +     L ++M   G+ PD   +N LI+G C   ++ +
Sbjct: 128 IMINCFCRC-----CKTCFAYSV-----LGKVMKL-GYEPDTTTFNTLINGLCLEGKVSK 176

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A+ L D M + GC P+ VTYNS +       +   A +M+RKM+  N       +Y+ II
Sbjct: 177 AVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADV-FTYSTII 235

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRI 420
            +LC  G +  A     E+   G      TY    + +C A    +   LL D + + I
Sbjct: 236 DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 15/204 (7%)

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           +++S+RG      T S+  L++   + G +  A   F  M      PDV  Y ++++ LC
Sbjct: 392 RNISKRGLVANAVTYSI--LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC 449

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
             G   KA  + E  +L   +    +  YT +I   CK G           ++ +A +LF
Sbjct: 450 DNGKLEKALEIFE--DLQKSKMDLGIVMYTTIIEGMCKGG-----------KVEDAWNLF 496

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             +  KG  P+V+ Y  +I G CK   +  A  L   M + G  PN  TYN+ IR +   
Sbjct: 497 CSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRD 556

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSS 359
            ++  + +++ +M++       SS
Sbjct: 557 GDLTASAKLIEEMKSCGFSADASS 580


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 146/326 (44%), Gaps = 49/326 (15%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           T   + +   R  +   + D L++M   G    + T ++   I+VLG  G +++A     
Sbjct: 229 TYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTIC--IRVLGRAGRIDDAYGILK 286

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM----------------------- 230
            M+   C PDV  Y V+I+ALC  G  +KA+ L  +M                       
Sbjct: 287 TMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYG 346

Query: 231 ----------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
                     E+      PDV TYTIL+ + CK G           ++ +A  +  +M  
Sbjct: 347 DLETVKRFWSEMEADGYAPDVVTYTILVEALCKSG-----------KVDQAFDMLDVMRV 395

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G VP++  YN LI G     R++ ALELF++M   G  P   +Y  FI YY  + + +K
Sbjct: 396 RGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEK 455

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A++   KM+    G+ P+ ++    +++L E GR+ EA+D   ++ + G  P   TY ++
Sbjct: 456 ALDTFEKMKK--RGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMM 513

Query: 400 CDALNAAEEPSLLDDGLRKRIRDGIE 425
               + A +       L + + +G E
Sbjct: 514 MKCYSKAGQIDKATKLLTEMLSEGCE 539



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 14/222 (6%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            LI  L + G   EA+  F  M  ++C+P+   YN++IN   + GN N A  L ++M   G
Sbjct: 899  LIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEG 958

Query: 235  FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             R  PD+ +YTIL+      G           R+ +A H F  +   G  PD V+YN +I
Sbjct: 959  IR--PDLKSYTILVECLFMTG-----------RVDDAVHYFEELKLTGLDPDTVSYNLMI 1005

Query: 295  DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            +G  K+ R+E AL LF +M  +G  P   TYN+ I ++     +D+A +M  ++Q +   
Sbjct: 1006 NGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLE 1065

Query: 355  VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             P   +Y  +I    ++G    A     +++  G  P   T+
Sbjct: 1066 -PNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTF 1106



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 14/243 (5%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G ++   S   LI  L + G   EAL  + RM     +P +  Y+ ++ AL R  + 
Sbjct: 184 RQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDT 243

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
                LLE+ME  G R  P++YTYTI I    + G           RI +A  + + M  
Sbjct: 244 GTIMDLLEEMETLGLR--PNIYTYTICIRVLGRAG-----------RIDDAYGILKTMED 290

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G  PDVV Y  LID  C   ++++A EL+  M      P+ VTY + +  +    +++ 
Sbjct: 291 EGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLET 350

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
                 +M+   +  P   +YT ++ ALC++G+V +A D L  +   G VP  +TY  + 
Sbjct: 351 VKRFWSEMEADGYA-PDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLI 409

Query: 401 DAL 403
             L
Sbjct: 410 SGL 412



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 120/273 (43%), Gaps = 28/273 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D  + M +RG   + + ++    +  L E G + EA   F  +      PD   YN+++ 
Sbjct: 458 DTFEKMKKRG--IMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMK 515

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
              + G  +KA  LL +M   G  C PD+     LI +  K G           R+ EA 
Sbjct: 516 CYSKAGQIDKATKLLTEMLSEG--CEPDIIVVNSLIDTLYKAG-----------RVDEAW 562

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F  +      P VV YN LI G  K  ++ +AL+LF  M + GC PN VT+N+ +   
Sbjct: 563 QMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCL 622

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
              + +D A++M  +M  +N   P   +Y  II+ L + GR   A  F  ++    S   
Sbjct: 623 CKNDAVDLALKMFCRMTIMNCS-PDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPDH 681

Query: 393 EYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
              Y L+         P ++ DG   R+ D I+
Sbjct: 682 VTLYTLL---------PGVVKDG---RVEDAIK 702



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 118/263 (44%), Gaps = 18/263 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F    +++ +  F  +M   G    V T ++  L++ L + G V++A      M+     
Sbjct: 342 FGNYGDLETVKRFWSEMEADGYAPDVVTYTI--LVEALCKSGKVDQAFDMLDVMRVRGIV 399

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+++ YN +I+ L  +   ++A  L   ME  G    P  Y+Y + I  Y K G      
Sbjct: 400 PNLHTYNTLISGLLNLRRLDEALELFNNMESLGV--APTAYSYVLFIDYYGKLGDPE--- 454

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                   +A   F  M  +G +P + A N  +    +  RI  A ++F+D++  G  P+
Sbjct: 455 --------KALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPD 506

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            VTYN  ++ YS   +IDKA +++ +M  L+ G  P       +I  L +AGRV EA   
Sbjct: 507 SVTYNMMMKCYSKAGQIDKATKLLTEM--LSEGCEPDIIVVNSLIDTLYKAGRVDEAWQM 564

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
              L D    P   TY ++   L
Sbjct: 565 FGRLKDLKLAPTVVTYNILITGL 587



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 16/240 (6%)

Query: 168  TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
            T  S  CL+  L    +   AL  F  MK   C P+++ YN++++A  +    ++   L 
Sbjct: 787  TPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELY 846

Query: 228  EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
             +M   G  C P++ T+ I+IS+  K              I +A  L+  ++   F P  
Sbjct: 847  NEMLCRG--CKPNIITHNIIISALVK-----------SNSINKALDLYYEIISGDFSPTP 893

Query: 288  VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
              Y  LI G  K  R E A+++F++M    C PN   YN  I  +     ++ A ++ ++
Sbjct: 894  CTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKR 953

Query: 348  MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            M  +  G+ P   SYT ++  L   GRV +A  +  EL   G  P   +Y L+ + L  +
Sbjct: 954  M--IKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKS 1011



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 15/184 (8%)

Query: 142  FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
            F +  NV    D  K M + G        S T L++ L   G V++A+  F  +K     
Sbjct: 938  FGKAGNVNIACDLFKRMIKEGIRP--DLKSYTILVECLFMTGRVDDAVHYFEELKLTGLD 995

Query: 202  PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            PD  +YN++IN L +     +A  L  +M+  G    P++YTY  LI  +   GM     
Sbjct: 996  PDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGIS--PELYTYNALILHFGNAGM----- 1048

Query: 262  KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                  + +A  +F  + F G  P+V  YN LI G  K+   +RA  +F  M   GC PN
Sbjct: 1049 ------VDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPN 1102

Query: 322  RVTY 325
              T+
Sbjct: 1103 AGTF 1106



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 1/154 (0%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  LF  M   G  P++  YN L+D   K+ RI+   EL+++M  +GC PN +T+N  I 
Sbjct: 807 ALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIIS 866

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                N I+KA+++  ++ + +   PT  +Y P+I  L +AGR  EA     E+ D    
Sbjct: 867 ALVKSNSINKALDLYYEIISGDFS-PTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCK 925

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           P    Y ++ +    A   ++  D  ++ I++GI
Sbjct: 926 PNCAIYNILINGFGKAGNVNIACDLFKRMIKEGI 959



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 1/144 (0%)

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
           +I+  I +A      M   GFV +  +YN LI    +    + AL+++  M  +G  P+ 
Sbjct: 168 SIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSM 227

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
            TY++ +       +    ++++ +M+ L    P   +YT  I  L  AGR+ +A   L 
Sbjct: 228 KTYSALMVALGRRRDTGTIMDLLEEMETLGL-RPNIYTYTICIRVLGRAGRIDDAYGILK 286

Query: 383 ELVDGGSVPREYTYKLVCDALNAA 406
            + D G  P   TY ++ DAL AA
Sbjct: 287 TMEDEGCGPDVVTYTVLIDALCAA 310



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 13/129 (10%)

Query: 169  TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
            T S   +I  LG+   + EAL+ F  MK     P++Y YN +I      G  ++A  + E
Sbjct: 998  TVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFE 1057

Query: 229  QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            +++  G    P+V+TY  LI  + K G +             A  +F+ M+  G  P+  
Sbjct: 1058 ELQFMGLE--PNVFTYNALIRGHSKSGNKD-----------RAFSVFKKMMIVGCSPNAG 1104

Query: 289  AYNCLIDGC 297
             +  L + C
Sbjct: 1105 TFAQLPNKC 1113


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 130/269 (48%), Gaps = 24/269 (8%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  + FAR        D + +MSRRG    V T ++  L+  L + GL+ EA    + 
Sbjct: 401 CKEGSLSFAR--------DLVNEMSRRGCEPNVITYAI--LVNGLCKAGLLEEAGLVLHE 450

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M       +   YN +I ALCR    + A  LL +M   G  C PD++TY  LI   CK 
Sbjct: 451 MSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKG--CKPDLFTYNSLIYGLCKV 508

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                       RI EA  LF  ML  G V + V YN LI    +    ++AL L +DM 
Sbjct: 509 -----------DRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDML 557

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
            +GC  +++TYN  I+ +  V  I+K +E+  +M     G  T S    +I+ LC+ G+V
Sbjct: 558 FRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISC-NIMINGLCKVGKV 616

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDAL 403
             A +FL + ++ G VP   TY  V + L
Sbjct: 617 DNAFEFLRDAINRGFVPDIVTYNSVLNGL 645



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 128/274 (46%), Gaps = 30/274 (10%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           N V      L+DM++ G    V  S V   LI  L ++  V+EAL     M    C PDV
Sbjct: 232 NEVDSACSLLRDMTKHG---CVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDV 288

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             +N VI+ LC+V   + A  L+++M L GF   PD  TY  L+   C+ G     RK +
Sbjct: 289 QTFNDVIHGLCKVNKIHDATKLVDRMLLRGFY--PDNMTYGFLLHGLCRIGKLNEARKIL 346

Query: 265 RR--------------------RIWEA-NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
            +                    ++ EA + L   M+  GF PD+  YN L+ G CK   +
Sbjct: 347 IKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSL 406

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YT 362
             A +L ++M+++GC PN +TY   +        +++A  ++ +M     G+  +S  Y 
Sbjct: 407 SFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMS--ARGLTINSVIYN 464

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +I ALC   +V  A + L+E+   G  P  +TY
Sbjct: 465 CLICALCRKEKVHVALNLLSEMCTKGCKPDLFTY 498



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 16/207 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G +    +   LI  L   G   +AL     M    C  D   YN +I A C+VGN  K
Sbjct: 524 DGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEK 583

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
              L EQM + G     D  +  I+I+  CK G           ++  A    R  + +G
Sbjct: 584 GLELYEQMIMDGL--GADTISCNIMINGLCKVG-----------KVDNAFEFLRDAINRG 630

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
           FVPD+V YN +++G CK  RI+ AL LFD +  +G  P+  TYN+FI +      ++ A 
Sbjct: 631 FVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDAC 690

Query: 343 EMM-RKMQNLNHGVPTSSSYTPIIHAL 368
               R ++  N  VP++ ++  +++ L
Sbjct: 691 SFFYRGIE--NGFVPSNLTWNVLVYTL 715



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 125/276 (45%), Gaps = 24/276 (8%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +   GN  +   +   DM  +G    V T  +  ++K L     V+ A +    M +  C
Sbjct: 192 ILVTGNCPQVATNVFYDMLSKGVSPTVFTFGI--VMKALCMFNEVDSACSLLRDMTKHGC 249

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+   Y  +I+AL +    ++A  LLE+M + G  C PDV T+  +I   CK       
Sbjct: 250 VPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMG--CMPDVQTFNDVIHGLCKV------ 301

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 +I +A  L   ML +GF PD + Y  L+ G C+  ++  A ++   + K  C P
Sbjct: 302 -----NKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKI---LIKIPC-P 352

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
           N    N+ I  Y +  ++ +A   + +   +N G  P   +Y  ++H LC+ G +  ARD
Sbjct: 353 NNAILNTLINGYVMSGQLKEAQSFLNETM-INFGFQPDIFTYNILMHGLCKEGSLSFARD 411

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAA---EEPSLL 412
            + E+   G  P   TY ++ + L  A   EE  L+
Sbjct: 412 LVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLV 447



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 107/239 (44%), Gaps = 19/239 (7%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A   FY M      P V+ + +V+ ALC     + A  LL  M   G  C P+   Y  L
Sbjct: 202 ATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHG--CVPNSIVYQTL 259

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I +  +           + ++ EA  L   M   G +PDV  +N +I G CK  +I  A 
Sbjct: 260 IHALSQ-----------KNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDAT 308

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           +L D M  +G  P+ +TY   +     + ++++A +++ K+       P ++    +I+ 
Sbjct: 309 KLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP-----CPNNAILNTLING 363

Query: 368 LCEAGRVLEARDFLAE-LVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
              +G++ EA+ FL E +++ G  P  +TY ++   L      S   D + +  R G E
Sbjct: 364 YVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCE 422


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 130/256 (50%), Gaps = 19/256 (7%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMK---QFRCRPDVYAYNVVINALCRVGNFNKAR 224
           T  S   ++ V+ +EGL + AL  FY      +    P+V ++N+VI A+C++G  ++A 
Sbjct: 150 TVRSFNSVLNVIIQEGLFHRALE-FYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAI 208

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            +  +M +   +C PDV+TY  L+   CK             RI EA  L   M  +G  
Sbjct: 209 EVFREMAIQ--KCEPDVFTYCTLMDGLCK-----------EDRIDEAVLLLDEMQIEGCF 255

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P  V +N LI+G CK   + R  +L D+M  KGC+PN VTYN+ I    +  ++DKA+ +
Sbjct: 256 PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSL 315

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           + +M   +  VP   +Y  +I+ L + GR ++    L+ L + G    EY Y  +   L 
Sbjct: 316 LDRMV-ASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGL- 373

Query: 405 AAEEPSLLDDGLRKRI 420
             EE S    GL K++
Sbjct: 374 FKEEKSEEAMGLWKKM 389



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 111/232 (47%), Gaps = 14/232 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L  +G +++A++   RM   +C P+   Y  +IN L + G       LL  +E  G
Sbjct: 299 IINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERG 358

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                + Y Y+ LIS   K             +  EA  L++ M+ KG  P++V Y+ LI
Sbjct: 359 HH--ANEYAYSTLISGLFK-----------EEKSEEAMGLWKKMVEKGCQPNIVVYSALI 405

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG C+  +++ A E+  +M  KGC PN  TY+S I+ +       KAI + ++M   N+ 
Sbjct: 406 DGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAK-NNC 464

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           VP    Y+ +IH LCE G++ EA      ++  G  P    Y  +   L  A
Sbjct: 465 VPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNA 516



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 128/267 (47%), Gaps = 17/267 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +G +V G+   L  +  RG+       + + LI  L +E    EA+  + +M +  C+P+
Sbjct: 341 QGRSVDGV-HLLSSLEERGHH--ANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPN 397

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +  Y+ +I+ LCR G  ++A+ +L +M   G  C P+ +TY+ LI  + K G     +KA
Sbjct: 398 IVVYSALIDGLCREGKLDEAKEILCEMVNKG--CTPNAFTYSSLIKGFFKTG---NSQKA 452

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
           IR  +W+       M     VP+ + Y+ LI G C+  ++  A+ ++  M  +G  P+ V
Sbjct: 453 IR--VWKE------MAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVV 504

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQ-NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
            Y+S I        ++  +++  +M    +   P   +Y  ++ ALC+   +  A D L 
Sbjct: 505 AYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLN 564

Query: 383 ELVDGGSVPREYTYKLVCDALNAAEEP 409
            ++D G  P   T  +  +AL     P
Sbjct: 565 SMLDRGCNPDLITCNIFLNALREKLNP 591



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 18/157 (11%)

Query: 142 FARGNNVKGL--WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           F  GN+ K +  W   K+M++  N  +      + LI  L E+G + EA+  +  M    
Sbjct: 444 FKTGNSQKAIRVW---KEMAK--NNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRG 498

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
            RPDV AY+ +I+ LC  G+      L  +M        PDV TY IL+ + CK      
Sbjct: 499 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCK------ 552

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                +  I  A  L   ML +G  PD++  N  ++ 
Sbjct: 553 -----QNSISHAIDLLNSMLDRGCNPDLITCNIFLNA 584


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 134/273 (49%), Gaps = 18/273 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V  +  N++     ++ M  RG    +   + T LI    ++G +++AL     M+Q R 
Sbjct: 299 VMCKAGNLEWAVTLVRQMRERG--LQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRI 356

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P V  YN +IN  C VG  ++AR LL +ME  G +  PDV TY+ +IS+YCK      C
Sbjct: 357 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLK--PDVVTYSTIISAYCK-----NC 409

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                     A  L + ML KG +PD + Y+ LI   C+  R+  A  LF +M K G  P
Sbjct: 410 DT------HSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQP 463

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
           +  TY S I  +     +++A+ +  KM  +  GV P   +Y+ +I+ L ++ R +EA+ 
Sbjct: 464 DEFTYTSLIDGHCKEGNVERALSLHDKM--VKAGVLPDVVTYSVLINGLSKSARAMEAQQ 521

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
            L +L     +P    Y  +      AE  S+L
Sbjct: 522 LLFKLYHEEPIPANTKYDALMHCCRKAELKSVL 554



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 19/216 (8%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+VY YN++I ALC  G+  +A  +L  M   G  C P+V TY  L++++ + G   G  
Sbjct: 148 PNVYTYNILIRALCGRGHRKEALSILRDMR--GAGCGPNVVTYNTLVAAFFRAGEVDG-- 203

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                    A  L  +ML  G  P++V +N +++G CK  ++E A ++FD+M ++G  P+
Sbjct: 204 ---------AERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPD 254

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            V+YN+ +  Y       +A+ +  +M     G+ P   ++T +IH +C+AG +  A   
Sbjct: 255 GVSYNTLVGGYCKAGCSHEALSVFAEMT--QKGIMPDVVTFTSLIHVMCKAGNLEWAVTL 312

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
           + ++ + G    E T+  + D      +   LDD L
Sbjct: 313 VRQMRERGLQMNEVTFTALIDGFC---KKGFLDDAL 345



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 129/292 (44%), Gaps = 28/292 (9%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
            RG+  + L   L+DM   G G  V T +   L+      G V+ A      M     +P
Sbjct: 162 GRGHRKEAL-SILRDMRGAGCGPNVVTYNT--LVAAFFRAGEVDGAERLVGMMLDGGLKP 218

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           ++  +N ++N +C+ G    AR + ++M   G    PD  +Y  L+  YCK     GC  
Sbjct: 219 NLVTFNSMVNGMCKAGKMEDARKVFDEMMREGL--APDGVSYNTLVGGYCK----AGCSH 272

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                  EA  +F  M  KG +PDVV +  LI   CK   +E A+ L   M ++G   N 
Sbjct: 273 -------EALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNE 325

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           VT+ + I  +     +D A+  +R M+      P+   Y  +I+  C  GR+ EAR+ L 
Sbjct: 326 VTFTALIDGFCKKGFLDDALLAVRGMRQCRIK-PSVVCYNALINGYCMVGRMDEARELLH 384

Query: 383 ELVDGGSVPREYTYKLV-------CDALNAAE-EPSLLDDGLRKRIRDGIEY 426
           E+   G  P   TY  +       CD  +A E    +L+ G+   + D I Y
Sbjct: 385 EMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGV---LPDAITY 433



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 3/130 (2%)

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           +  A   F  ML  G  P+V  YN LI   C     + AL +  DM   GC PN VTYN+
Sbjct: 131 LTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNT 190

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            +  +    E+D A  ++  M  L+ G+ P   ++  +++ +C+AG++ +AR    E++ 
Sbjct: 191 LVAAFFRAGEVDGAERLVGMM--LDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMR 248

Query: 387 GGSVPREYTY 396
            G  P   +Y
Sbjct: 249 EGLAPDGVSY 258



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 44/224 (19%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + + LI+VL EE  +++A   F  M +   +PD + Y  +I+  C+ GN  +A
Sbjct: 425 GVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERA 484

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG--------------------------MQ 257
             L ++M   G    PDV TY++LI+   K                            + 
Sbjct: 485 LSLHDKMVKAGVL--PDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALM 542

Query: 258 TGCRKAIRRRIW-------------EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             CRKA  + +              EA+ +++ ML + +  D   Y+ LI G C+   + 
Sbjct: 543 HCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVM 602

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYY---SVVNEIDKAIEMM 345
           +AL     M ++G  PN  +  S IR      +V E D+ I+ +
Sbjct: 603 KALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQL 646



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 30/211 (14%)

Query: 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           GL+K+       +  F  +H E              N K  +D L    R+         
Sbjct: 509 GLSKSARAMEAQQLLFKLYHEEPIPA----------NTK--YDALMHCCRKAE-----LK 551

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           SV  L+K    +GL+NEA   +  M       D   Y+V+I+  CR GN  KA    +QM
Sbjct: 552 SVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQM 611

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              GF   P+  +   LI    + GM           + EA+ + + +L    + D  A 
Sbjct: 612 LQRGF--APNSTSTISLIRGLFENGM-----------VVEADQVIQQLLNCCSLADAEAS 658

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             LID       ++  L++   M K G +P+
Sbjct: 659 KALIDLNLNEGNVDAVLDVLHGMAKDGLLPS 689


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 141/294 (47%), Gaps = 36/294 (12%)

Query: 152 WDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           +DF  +M+ RG   +++T S++ C   + G+   +  A +    M      PDVY Y ++
Sbjct: 292 YDFYTEMNSRGIFPDVITYSTLICGFCLAGQ---LMGAFSLLNEMTLKNINPDVYTYTIL 348

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQT 258
           I+ALC+ G   +A+ LL  M   G +  P+V TY+ L+  YC  G            +QT
Sbjct: 349 IDALCKEGKLKEAKNLLGVMTKEGVK--PNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQT 406

Query: 259 GCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
               ++             + + EA +L R ML K  VP+ V YN LIDG CK+ RI  A
Sbjct: 407 EVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSA 466

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
           L+L  +++ +G   + +TY S +        +DKAI +  KM+    G+ P   +YT +I
Sbjct: 467 LDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMK--ERGIQPNKYTYTALI 524

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
             LC+  R+  A+     ++  G     YTY ++   L    +  +LD+ L  +
Sbjct: 525 DGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLC---KEGMLDEALAMK 575



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 121/250 (48%), Gaps = 22/250 (8%)

Query: 156 KDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           K M  +G   +LVT S    LI      G +  + +   ++ +   +P+      ++  L
Sbjct: 156 KQMEVKGIEPDLVTLS---ILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGL 212

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           C  G   K+    +++   GF+   +  +Y  L++  CK G +T C  AI+        L
Sbjct: 213 CLKGEVKKSLHFHDKVVAQGFQM--NQVSYGTLLNGLCKIG-ETRC--AIK--------L 259

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
            R++  +   PDVV YN +IDG CK   +  A + + +MN +G  P+ +TY++ I  + +
Sbjct: 260 LRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCL 319

Query: 335 VNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             ++  A  ++ +M  +N+N   P   +YT +I ALC+ G++ EA++ L  +   G  P 
Sbjct: 320 AGQLMGAFSLLNEMTLKNIN---PDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPN 376

Query: 393 EYTYKLVCDA 402
             TY  + D 
Sbjct: 377 VVTYSTLMDG 386



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 98/209 (46%), Gaps = 19/209 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
             +G +V    + L++M  +     V  ++VT   LI  L + G +  AL     +    
Sbjct: 422 LCKGKSVDEAMNLLREMLHKN----VVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRG 477

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
              DV  Y  +++ LC+  N +KA  L  +M+  G +  P+ YTYT LI   CK      
Sbjct: 478 QPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQ--PNKYTYTALIDGLCKGA---- 531

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  R+  A  LF+ +L KG   DV  YN +I G CK   ++ AL +   M   GCI
Sbjct: 532 -------RLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCI 584

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           P+ VT+   IR     +E DKA +++ +M
Sbjct: 585 PDAVTFEIIIRSLFEKDENDKAEKLLHEM 613



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 96/204 (47%), Gaps = 14/204 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+EA+     M      P+   YN +I+ LC+ G    A  L++++   G   P DV TY
Sbjct: 428 VDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQ--PADVITY 485

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T L+   CK            + + +A  LF  M  +G  P+   Y  LIDG CK  R++
Sbjct: 486 TSLLDGLCK-----------NQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLK 534

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A +LF  +  KGC  +  TYN  I        +D+A+ M  KM++ N  +P + ++  I
Sbjct: 535 NAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMED-NGCIPDAVTFEII 593

Query: 365 IHALCEAGRVLEARDFLAELVDGG 388
           I +L E     +A   L E++  G
Sbjct: 594 IRSLFEKDENDKAEKLLHEMIAKG 617



 Score = 42.4 bits (98), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 37/166 (22%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLID----------------------------------- 295
           A  L + M  KG  PD+V  + LI+                                   
Sbjct: 151 AISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMK 210

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G C    ++++L   D +  +G   N+V+Y + +     + E   AI+++R +++     
Sbjct: 211 GLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIED-RSTR 269

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK-LVC 400
           P    Y  II  LC+   V EA DF  E+   G  P   TY  L+C
Sbjct: 270 PDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLIC 315


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 149/317 (47%), Gaps = 39/317 (12%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           E TC E G+    G  +K     L +M  RG    V T +V  L+  + +EG ++EA+  
Sbjct: 24  EATCAESGV----GQAMK----LLDEMGSRGCKPDVVTYNV--LVNGMCKEGRLDEAIKF 73

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              M  +  +P+V  +N+++ ++C  G +  A  LL +M   G  C P V T+ ILI+  
Sbjct: 74  LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKG--CSPSVVTFNILINFL 131

Query: 252 CKYGM------------QTGCRK------------AIRRRIWEANHLFRLMLFKGFVPDV 287
           C+ G+              GC                 +++  A     +M+ +G  PD+
Sbjct: 132 CRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDI 191

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V YN ++   CK  +++ A+EL + ++ KGC P  +TYN+ I   S V + D+A+E++ +
Sbjct: 192 VTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHE 251

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           M+    G+ P   +Y+ +I  L   G+V EA  F  ++   G  P  +TY  +   L  A
Sbjct: 252 MR--GKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKA 309

Query: 407 EEPSLLDDGLRKRIRDG 423
           ++     D L   I  G
Sbjct: 310 QQTDRAIDFLAYMISKG 326



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 16/233 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+    E  V +A+     M    C+PDV  YNV++N +C+ G  ++A   L  M  
Sbjct: 20  TILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSM-- 77

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
           P +   P+V T+ I++ S C  G           R  +A  L   M+ KG  P VV +N 
Sbjct: 78  PSYGSQPNVITHNIILRSMCSTG-----------RWMDAEKLLTEMVRKGCSPSVVTFNI 126

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI+  C+   + RA+++ + M   GC PN ++YN  +  +    ++D+AI+ +  M  ++
Sbjct: 127 LINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIM--VS 184

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
            G  P   +Y  ++ ALC+ G+V  A + L +L   G  P   TY  V D L+
Sbjct: 185 RGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLS 237



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 102/211 (48%), Gaps = 16/211 (7%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           R  +  C PDV  Y ++I A C      +A  LL++M   G  C PDV TY +L++  CK
Sbjct: 6   RQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRG--CKPDVVTYNVLVNGMCK 63

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           R+ EA      M   G  P+V+ +N ++   C T R   A +L  +M
Sbjct: 64  EG-----------RLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEM 112

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAG 372
            +KGC P+ VT+N  I +      + +AI+++ KM    HG  P S SY P++H  C+  
Sbjct: 113 VRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMP--THGCTPNSLSYNPLLHGFCKEK 170

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++  A  +L  +V  G  P   TY  +  AL
Sbjct: 171 KMDRAIQYLEIMVSRGCYPDIVTYNTMLTAL 201



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 123/279 (44%), Gaps = 35/279 (12%)

Query: 150 GLW----DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           G W      L +M R+G    V T ++  LI  L  +GL+  A+    +M    C P+  
Sbjct: 100 GRWMDAEKLLTEMVRKGCSPSVVTFNI--LINFLCRKGLLGRAIDILEKMPTHGCTPNSL 157

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG---------- 255
           +YN +++  C+    ++A   LE M   G  C PD+ TY  ++++ CK G          
Sbjct: 158 SYNPLLHGFCKEKKMDRAIQYLEIMVSRG--CYPDIVTYNTMLTALCKDGKVDAAVELLN 215

Query: 256 --MQTGCRKAIRR------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
                GC   +              +  +A  L   M  KG  PDV+ Y+ LI G  +  
Sbjct: 216 QLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREG 275

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
           ++E A++ F D+   G  PN  TYNS +       + D+AI+ +  M  ++ G  PT  S
Sbjct: 276 KVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYM--ISKGCKPTEVS 333

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           YT +I  +   G   EA + L EL   G V +    ++V
Sbjct: 334 YTILIEGIANEGLAKEALELLNELCSRGVVKKSSAEQVV 372



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
           +E+ D   +K C P+ +TY   I      + + +A++++ +M +     P   +Y  +++
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCK-PDVVTYNVLVN 59

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRK 418
            +C+ GR+ EA  FL  +   GS P   T+ ++    C      +   LL + +RK
Sbjct: 60  GMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRK 115


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 14/228 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L  VL + G+V EA+  F +MK+FR  P   + N +++   ++G  +  +   + M   G
Sbjct: 31  LFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAG 90

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P V+TY I+I   CK G            +  A  LF  M F+G +PD V YN +I
Sbjct: 91  AK--PTVFTYNIMIDCMCKEG-----------DVEAARGLFEEMKFRGLIPDTVTYNSMI 137

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K  R++  +  F++M    C P+ +TYN+ I  +    ++ K +E  R+M+  N  
Sbjct: 138 DGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKR-NGL 196

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            P   SY+ ++ A C+ G + +A  F  ++   G VP EYTY  + DA
Sbjct: 197 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 244



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 130/281 (46%), Gaps = 20/281 (7%)

Query: 108 VTLGL-NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL 166
           + LG+  +A + +  ++RF   F    +C  +   FA+     G+  F KDM   G G  
Sbjct: 36  IDLGMVEEAIQCFSKMKRF-RVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMI--GAGAK 92

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
            T  +   +I  + +EG V  A   F  MK     PD   YN +I+   +VG  +     
Sbjct: 93  PTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCF 152

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
            E+M+     C PDV TY  LI+ +CK+G           ++ +    FR M   G  P+
Sbjct: 153 FEEMK--DMCCEPDVITYNALINCFCKFG-----------KLPKGLEFFREMKRNGLKPN 199

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           VV+Y+ L+D  CK   +++A++ + DM + G +PN  TY S I  Y  +  +  A  +  
Sbjct: 200 VVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLAN 259

Query: 347 KMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVD 386
           +M  L  GV  +  +YT +I  LC      E    L E+V+
Sbjct: 260 EM--LQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVE 298



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 123/293 (41%), Gaps = 38/293 (12%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  +  ARG          ++M  RG   +  T +   +I   G+ G +++ +  F  
Sbjct: 106 CKEGDVEAARG--------LFEEMKFRG--LIPDTVTYNSMIDGFGKVGRLDDTVCFFEE 155

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           MK   C PDV  YN +IN  C+ G   K      +M+  G +  P+V +Y+ L+ ++CK 
Sbjct: 156 MKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLK--PNVVSYSTLVDAFCKE 213

Query: 255 GMQTGCRK---AIRR------------------RIWEANHLFRL---MLFKGFVPDVVAY 290
           GM     K    +RR                  +I   +  FRL   ML  G   +VV Y
Sbjct: 214 GMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTY 273

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LIDG C        L L D+M +       VT+   I        + KAI+   ++ N
Sbjct: 274 TALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISN 333

Query: 351 LNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            + G+  +++ YT +I  LC+  +V  A     ++   G VP    Y  + D 
Sbjct: 334 -DFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDG 385



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 125/280 (44%), Gaps = 51/280 (18%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           KGL +F ++M R  NG      S + L+    +EG++ +A+  +  M++    P+ Y Y 
Sbjct: 183 KGL-EFFREMKR--NGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYT 239

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY-----GMQ------ 257
            +I+A C++GN + A  L  +M   G     +V TYT LI   C +     G+       
Sbjct: 240 SLIDAYCKIGNLSDAFRLANEMLQVGVEW--NVVTYTALIDGLCGWENPTEGLHLLDEMV 297

Query: 258 ---------TGC--------RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
                    T C         K + + I   ++  R+    G   +   Y  +IDG CK 
Sbjct: 298 ELDIKVTVVTFCVLIDGLCKNKLVSKAI---DYFGRISNDFGLQANAAIYTAMIDGLCKG 354

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFI----RYYSVVNEI---DKAIEMMRKMQNLNH 353
            ++E A  LF+ M +KG +P+R  Y S +    +  +V+  +   DK +E   K+  L  
Sbjct: 355 NQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLL-- 412

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
                 +YT ++  L    ++ +AR FL E++  G  P E
Sbjct: 413 ------AYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDE 446


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 125/251 (49%), Gaps = 16/251 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D L+ M  R     V T S   +I  L  +G ++ A++ F  M+    +  +  YN ++ 
Sbjct: 191 DLLRKMDERNVKADVFTYST--IIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVG 248

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+ G +N    LL+ M     +  P+V T+ +LI  + K G           ++ EAN
Sbjct: 249 GLCKAGKWNDGVQLLKDM--TSRKIIPNVITFNVLIDVFVKEG-----------KLQEAN 295

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L++ M+ KG  P+ + YN L+DG C   R+  A  + D M +  C P+ VT+ S I+ Y
Sbjct: 296 ELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGY 355

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             V  +D+ +++ RK+      V  + +Y+ ++   C++G++  A +   E+V  G +P 
Sbjct: 356 CKVKRVDEGMKLFRKISKRGL-VANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPD 414

Query: 393 EYTYKLVCDAL 403
             TY ++ D L
Sbjct: 415 VMTYGILLDGL 425



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 129/280 (46%), Gaps = 20/280 (7%)

Query: 150 GLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           G W+     LKDM+ R     V T +V  LI V  +EG + EA   +  M      P+  
Sbjct: 254 GKWNDGVQLLKDMTSRKIIPNVITFNV--LIDVFVKEGKLQEANELYKEMITKGISPNTI 311

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            YN +++  C     ++A  +L+ M      C PD+ T+T LI  YCK            
Sbjct: 312 TYNSLMDGYCMQNRLSEANNMLDLMVRN--NCSPDIVTFTSLIKGYCKV----------- 358

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           +R+ E   LFR +  +G V + V Y+ L+ G C++ ++E A ELF +M   G +P+ +TY
Sbjct: 359 KRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTY 418

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              +       +++KA+E+   +Q     +     YT II  +C+ G+V +A +    L 
Sbjct: 419 GILLDGLCDNGKLEKALEIFEDLQKSKMNLDI-VMYTIIIEGMCKGGKVEDAWNLFCSLP 477

Query: 386 DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
             G  P   TY ++   L      S  +  LRK   DG E
Sbjct: 478 CKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNE 517



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 16/229 (6%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T++   LI  L  E  V+EA+    RM +  C+P+V  YN ++N +C+ G+ + A  LL 
Sbjct: 135 TTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLR 194

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M+    +   DV+TY+ +I S C+     GC  A       A  LF+ M  KG    +V
Sbjct: 195 KMDERNVK--ADVFTYSTIIDSLCR----DGCIDA-------AISLFKEMETKGIKSSLV 241

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN L+ G CK  +    ++L  DM  +  IPN +T+N  I  +    ++ +A E+ ++M
Sbjct: 242 TYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEM 301

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             +  G+ P + +Y  ++   C   R+ EA + L  +V     P   T+
Sbjct: 302 --ITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTF 348



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 15/206 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
             + +S+RG   +  T + + L++   + G +  A   F  M      PDV  Y ++++ 
Sbjct: 367 LFRKISKRG--LVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDG 424

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC  G   KA  + E  +L   +   D+  YTI+I   CK G           ++ +A +
Sbjct: 425 LCDNGKLEKALEIFE--DLQKSKMNLDIVMYTIIIEGMCKGG-----------KVEDAWN 471

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF  +  KG  P+V+ Y  +I G CK   +  A  L   M + G  PN  TYN+ IR + 
Sbjct: 472 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHL 531

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSS 359
              ++  + +++ +M++       SS
Sbjct: 532 RDGDLTASAKLIEEMKSCGFSADASS 557



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 18/239 (7%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++A+  F  M + R  P +  ++   + +     FN      ++MEL G     ++YT  
Sbjct: 47  DDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGI--AHNIYTLN 104

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           I+I+ +C+      C+      +     L ++M   G+ PD   +N LI+G C   ++  
Sbjct: 105 IMINCFCRC-----CKTCFAYSV-----LGKVMKL-GYEPDTTTFNTLINGLCLESKVSE 153

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A+ L   M + GC PN VTYNS +       +   A++++RKM   N       +Y+ II
Sbjct: 154 AVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADV-FTYSTII 212

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRI 420
            +LC  G +  A     E+   G      TY      +C A    +   LL D   ++I
Sbjct: 213 DSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKI 271


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 125/260 (48%), Gaps = 20/260 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTS--SVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           F R   VK    F K+M  R     VT    S +CLI +    G ++ A A    MK   
Sbjct: 272 FCRVGEVKEAVKFYKEMQHR----YVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLG 327

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             PD   Y +VI   CR G+ ++A  L  + E+ GF C PDV TY  L++  CK      
Sbjct: 328 LVPDGVIYTMVIGGFCRAGSMSEA--LRVRDEMVGFGCLPDVVTYNTLLNGLCK------ 379

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                + R+ +A  L   M  +G  PD+  +  LI G C+    E AL+LFD + ++   
Sbjct: 380 -----QHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLR 434

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ VTYNS I       ++ KA E+   M +    +P   +Y+ +I + CE G+V +A  
Sbjct: 435 PDVVTYNSLIDGMCRKGDLAKANELWDDM-HAREILPNHITYSILIDSHCEKGQVEDAFG 493

Query: 380 FLAELVDGGSVPREYTYKLV 399
           FL E+V  G++P   TY  +
Sbjct: 494 FLDEMVKKGNLPNIRTYNSI 513



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 121/256 (47%), Gaps = 16/256 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +F+R   +     +L++M  +G G +      T +I      G ++EAL     M  F C
Sbjct: 306 LFSRRGEMDHAGAYLREM--KGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGC 363

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PDV  YN ++N LC+      A  LL +ME  G    PD+ T+T LI  YC+ G     
Sbjct: 364 LPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERG--VTPDLCTFTTLIHGYCRQG----- 416

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                     A  LF  +L +   PDVV YN LIDG C+   + +A EL+DDM+ +  +P
Sbjct: 417 ------NFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILP 470

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N +TY+  I  +    +++ A   + +M    + +P   +Y  II   C +G V + + F
Sbjct: 471 NHITYSILIDSHCEKGQVEDAFGFLDEMVKKGN-LPNIRTYNSIIKGYCRSGNVKKGQQF 529

Query: 381 LAELVDGGSVPREYTY 396
           L ++      P   T+
Sbjct: 530 LQKMRQDNVFPDLITF 545



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 14/202 (6%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  +NV+I+A  R G+ + A  L++ M   G +  P + TY  ++   CK+       
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLK--PGIVTYNSVLKGLCKH------- 240

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               RR  +A  +FR M      PDV ++N LI G C+   ++ A++ + +M  +   P+
Sbjct: 241 ----RRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPD 296

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            V+++  I  +S   E+D A   +R+M+ L   VP    YT +I   C AG + EA    
Sbjct: 297 VVSFSCLIGLFSRRGEMDHAGAYLREMKGLGL-VPDGVIYTMVIGGFCRAGSMSEALRVR 355

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+V  G +P   TY  + + L
Sbjct: 356 DEMVGFGCLPDVVTYNTLLNGL 377



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 16/243 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L +M  RG    + T   T LI     +G    AL  F  + + R RPDV  YN +I+ 
Sbjct: 389 LLNEMEERGVTPDLCT--FTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDG 446

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           +CR G+  KA  L + M        P+  TY+ILI S+C+ G           ++ +A  
Sbjct: 447 MCRKGDLAKANELWDDMH--AREILPNHITYSILIDSHCEKG-----------QVEDAFG 493

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
               M+ KG +P++  YN +I G C++  +++  +    M +    P+ +T+N+ I  Y 
Sbjct: 494 FLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYI 553

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
               +  A  +   M+      P + +Y  II+   E G + +A      + D G  P  
Sbjct: 554 KEENMHGAFNVFNIMEK-EMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDR 612

Query: 394 YTY 396
           YTY
Sbjct: 613 YTY 615



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 18/234 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI      G V EA+  +  M+     PDV +++ +I    R G  + A   L +M
Sbjct: 264 SFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREM 323

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  G    PD   YT++I  +C+ G  +   +A+R R          M+  G +PDVV Y
Sbjct: 324 K--GLGLVPDGVIYTMVIGGFCRAGSMS---EALRVR--------DEMVGFGCLPDVVTY 370

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-- 348
           N L++G CK +R+  A +L ++M ++G  P+  T+ + I  Y      + A+++   +  
Sbjct: 371 NTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLR 430

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           Q L    P   +Y  +I  +C  G + +A +   ++     +P   TY ++ D+
Sbjct: 431 QRLR---PDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDS 481



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 122/273 (44%), Gaps = 24/273 (8%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           + +M +R     V T +V  LI      G V+ A+A    M     +P +  YN V+  L
Sbjct: 180 ISEMEKRCVFPDVVTHNV--LIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGL 237

Query: 215 CRVGNFNKARFLLEQMELPGFRC--PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           C+   F+KA+ +   M+    +C   PDV ++ ILI  +C+ G            + EA 
Sbjct: 238 CKHRRFDKAKEVFRTMD----QCSVAPDVRSFNILIGGFCRVG-----------EVKEAV 282

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
             ++ M  +   PDVV+++CLI    +   ++ A     +M   G +P+ V Y   I  +
Sbjct: 283 KFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGF 342

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
                + +A+ +  +M      +P   +Y  +++ LC+  R+L+A   L E+ + G  P 
Sbjct: 343 CRAGSMSEALRVRDEMVGFG-CLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPD 401

Query: 393 EYTYKLV----CDALNAAEEPSLLDDGLRKRIR 421
             T+  +    C   N      L D  LR+R+R
Sbjct: 402 LCTFTTLIHGYCRQGNFENALQLFDTLLRQRLR 434



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 20/199 (10%)

Query: 151 LWDFLKDMSRRGNGELVTTS-SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
           LWD   DM  R   E++    + + LI    E+G V +A      M +    P++  YN 
Sbjct: 459 LWD---DMHAR---EILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNS 512

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +I   CR GN  K +  L++M        PD+ T+  LI  Y K     G          
Sbjct: 513 IIKGYCRSGNVKKGQQFLQKMRQDNVF--PDLITFNTLIHGYIKEENMHG---------- 560

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            A ++F +M  +   PD V YN +I+G  +   ++ A  +F  M   G  P+R TY S I
Sbjct: 561 -AFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLI 619

Query: 330 RYYSVVNEIDKAIEMMRKM 348
             +       +A ++  +M
Sbjct: 620 NGHVTAGNSKQAFQLHDEM 638



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 15/176 (8%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
             V+  + FL +M ++GN  L    +   +IK     G V +      +M+Q    PD+ 
Sbjct: 486 GQVEDAFGFLDEMVKKGN--LPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLI 543

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            +N +I+   +  N + A  +   ME    R  PD  TY ++I+ + + G          
Sbjct: 544 TFNTLIHGYIKEENMHGAFNVFNIMEKEMVR--PDAVTYNMIINGFSEQG---------- 591

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             + +A  +F+ M   G  PD   Y  LI+G       ++A +L D+M  +G  P+
Sbjct: 592 -NMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPD 646



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A   +RL+L      +    N ++   CKT   + A  +  +M K+   P+ VT+N  I 
Sbjct: 141 AQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLID 200

Query: 331 YYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPIIHALCEAGRVLEARD 379
                 ++D AI ++  M N  L  G+ T   Y  ++  LC+  R  +A++
Sbjct: 201 ARFRAGDVDAAIALVDSMANRGLKPGIVT---YNSVLKGLCKHRRFDKAKE 248


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 124/257 (48%), Gaps = 19/257 (7%)

Query: 172 VTCLIKVLGEEGLVNEALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           V  L+K L +   V EA+    R M +  CR  V +YN ++  LC      +AR LL  M
Sbjct: 122 VNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMM 181

Query: 231 -ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
            +     C PDV +Y I+I+ +   G              + +  + L L  G  PDVV 
Sbjct: 182 VDGQDSSCSPDVVSYNIVINGFFNEG--------------QVDKAYSLFLEMGVSPDVVT 227

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN +IDG CK   ++RA ++F  M +KG  PN VTYN+ I       E+D A  + +KM 
Sbjct: 228 YNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKM- 286

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            ++ GV P++ +Y  II  LC+A  V  A     +++D G  P   TY  + D L  A+ 
Sbjct: 287 -VDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQA 345

Query: 409 PSLLDDGLRKRIRDGIE 425
               +   ++ I  G++
Sbjct: 346 IDKAEGVFQQMIDKGVK 362



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 110/230 (47%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G V++A+  F +M      P+   +N ++  LC V  + K   L  +M   G
Sbjct: 546 LIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQG 605

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R  PD+  +  ++ + CK G           R+ EA  L   M+  G  PDV++YN LI
Sbjct: 606 IR--PDIVFFNTVLCNLCKEG-----------RVMEARRLIDSMVCMGLKPDVISYNTLI 652

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG C   R++ A++L D M   G  PN V+YN+ +  Y     ID A  + R+M  L  G
Sbjct: 653 DGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREM--LRKG 710

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           V P   +Y  I++ L  +GR  EAR+    ++    +    TY ++ D  
Sbjct: 711 VTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGF 760



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 114/260 (43%), Gaps = 29/260 (11%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
              +  CLI      G   E +     M      PDV+ Y ++++ LC+ G  N+AR L 
Sbjct: 399 NNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLF 458

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTG------------------------CRKA 263
           + M   G +  P V  Y I++  Y K G  +                         C  A
Sbjct: 459 DSMIRKGIK--PSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYA 516

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
            R  I E  H+F  M  +G  P+VV Y  LID  CK  R++ A+  F+ M  +G  PN V
Sbjct: 517 KRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNV 576

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
            +NS +     V++ +K  E+  +M  LN G+ P    +  ++  LC+ GRV+EAR  + 
Sbjct: 577 VFNSLVYGLCTVDKWEKVEELFLEM--LNQGIRPDIVFFNTVLCNLCKEGRVMEARRLID 634

Query: 383 ELVDGGSVPREYTYKLVCDA 402
            +V  G  P   +Y  + D 
Sbjct: 635 SMVCMGLKPDVISYNTLIDG 654



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 16/246 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+ A   F +M     +P    YN +I+ LC+    ++A  + +QM   G +  PD  TY
Sbjct: 276 VDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVK--PDHVTY 333

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             +I   CK            + I +A  +F+ M+ KG  PD + Y  +IDG CK   ++
Sbjct: 334 NTIIDGLCK-----------AQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVD 382

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
           RA  +F  M  KG  PN  TYN  I  Y    + ++ ++ +++M    H + P   +Y  
Sbjct: 383 RAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMS--AHDLEPDVFTYGL 440

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           ++  LC+ G+  EAR     ++  G  P    Y ++          S + D L   + +G
Sbjct: 441 LLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANG 500

Query: 424 IEYRFR 429
           I    R
Sbjct: 501 ISPNHR 506



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 126/258 (48%), Gaps = 19/258 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL+ +++    ++V  ++V C    L +EG V EA      M     +PDV +YN +I+ 
Sbjct: 598 FLEMLNQGIRPDIVFFNTVLC---NLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDG 654

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C     ++A  LL+ M   G +  P++ +Y  L+  YCK G           RI  A  
Sbjct: 655 HCFASRMDEAVKLLDGMVSAGLK--PNIVSYNTLLHGYCKAG-----------RIDNAYC 701

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LFR ML KG  P V  YN +++G  ++ R   A EL+ +M K   + +  TY+  +  + 
Sbjct: 702 LFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFC 761

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             N  D+A ++ + + +++  +    ++  +I  L + GR  +A D  A +   G VP  
Sbjct: 762 KNNCFDEAFKIFQSLCSMDLQLDI-ITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSV 820

Query: 394 YTYKLVCDALNAAEEPSL 411
            TY+L+  A N  EE SL
Sbjct: 821 VTYRLI--AENLIEEGSL 836



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 47/246 (19%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-------------- 230
           +++A   F +M     +PD   Y ++I+ LC+  + ++A  + +QM              
Sbjct: 346 IDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNC 405

Query: 231 -------------------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
                              E+      PDV+TY +L+   CK G           +  EA
Sbjct: 406 LIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNG-----------KCNEA 454

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             LF  M+ KG  P V  Y  ++ G  K   +    +L + M   G  PN   +N+ I  
Sbjct: 455 RSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICA 514

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
           Y+    ID+ + +  KM+    G+ P   +Y  +I ALC+ GRV +A     ++++ G  
Sbjct: 515 YAKRAMIDEVMHIFIKMKQ--QGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVT 572

Query: 391 PREYTY 396
           P    +
Sbjct: 573 PNNVVF 578



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 81/206 (39%), Gaps = 26/206 (12%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++ A   F  M +    P V  YN ++N L R G F++AR L   M     R    + 
Sbjct: 694 GRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKS--RKLWSIC 751

Query: 243 TYTILISSYCKYG--------MQTGCRKAIRRRIW----------------EANHLFRLM 278
           TY+I++  +CK           Q+ C   ++  I                 +A  LF  +
Sbjct: 752 TYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAI 811

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
              G VP VV Y  + +   +   +E    LF  M K G  PN    N+ IR      EI
Sbjct: 812 PANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEI 871

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPI 364
            +A   + K+   N  +  S++   I
Sbjct: 872 PRAGAYLSKLDEKNFSLEASTTSMLI 897


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 147/310 (47%), Gaps = 25/310 (8%)

Query: 125 FFDFFHNEMT-CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183
           F  F  +++T C  +  + A G+  + L  F +  ++    ++V  +S   L+K L  +G
Sbjct: 321 FKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNS---LVKGLCLQG 377

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           L+  AL     M +  C PD+  YN+VIN LC++GN + A  ++    + G+   PDV+T
Sbjct: 378 LILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYL--PDVFT 435

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           +  LI  YCK           R ++  A  L   M   G  PD + YN +++G CK  ++
Sbjct: 436 FNTLIDGYCK-----------RLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKV 484

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYT 362
               E F +M  KGC PN +TYN  I  +   N++++A +++ KM     G+ P + S+ 
Sbjct: 485 NEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMS--QEGLHPDAVSFN 542

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA----LNAAEEPSLLDDGLRK 418
            +I+  C  G +  A     +L + G      T+  +  A    LN      + D+ L K
Sbjct: 543 TLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSK 602

Query: 419 RIR-DGIEYR 427
             R D   YR
Sbjct: 603 GHRADSYTYR 612



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 113/227 (49%), Gaps = 15/227 (6%)

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           I+ L E G + EA+     M+ +   PDV  YN +I  LC+     +A   L +M   G 
Sbjct: 231 IRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG- 288

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
            C PD +TY  +I  YCK  M           + EA  L +  +FKGFVPD V Y  LI+
Sbjct: 289 -CLPDDFTYNTIIDGYCKISM-----------VQEATELLKDAVFKGFVPDQVTYCSLIN 336

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G C    +ERALELF++   KG  P+ V YNS ++   +   I  A+++M +M       
Sbjct: 337 GLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAE-EGCH 395

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           P   +Y  +I+ LC+ G + +A   + + +  G +P  +T+  + D 
Sbjct: 396 PDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 442



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 21/249 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++  L + G V EA     ++ Q     +++ YN+ I  LC  G   +A  L++ M    
Sbjct: 195 VLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA 254

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDV TY  LI   CK  M             EA H  R M+ +G +PD   YN +I
Sbjct: 255 V---PDVVTYNTLIRGLCKKSMP-----------QEAMHYLRRMMNQGCLPDDFTYNTII 300

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK   ++ A EL  D   KG +P++VTY S I       ++++A+E+  + Q    G
Sbjct: 301 DGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQ--AKG 358

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEP 409
           + P    Y  ++  LC  G +L A   + E+ + G  P   TY +V + L    N ++  
Sbjct: 359 IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 418

Query: 410 SLLDDGLRK 418
            +++D + K
Sbjct: 419 VVMNDAIMK 427



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 121/264 (45%), Gaps = 32/264 (12%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+ L ++ +  EA+    RM    C PD + YN +I+  C++    +A  LL+     G
Sbjct: 264 LIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKG 323

Query: 235 FRCPPDVYTYTILISSYCKYG--------MQTGCRKAIRRRIWEANHLFRLMLFKGFV-- 284
           F   PD  TY  LI+  C  G              K I+  I   N L + +  +G +  
Sbjct: 324 F--VPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILH 381

Query: 285 --------------PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
                         PD+  YN +I+G CK   I  A  + +D   KG +P+  T+N+ I 
Sbjct: 382 ALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLID 441

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
            Y    ++D A++++ +M    +G+ P + +Y  +++ LC+AG+V E  +   E++  G 
Sbjct: 442 GYCKRLKLDSALQLVERM--WEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 499

Query: 390 VPREYTYKLVCDAL---NAAEEPS 410
            P   TY ++ +     N  EE S
Sbjct: 500 HPNPITYNILIENFCRSNKMEEAS 523



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 24/247 (9%)

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           I+     G + +A+  F RM  F C P   AYN +++AL      ++A  +  +M   G 
Sbjct: 60  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 119

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------------------RIWEANHLF 275
              PD++T+TI + S+C         + +R                        +A  LF
Sbjct: 120 S--PDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLF 177

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             ML     P++ A+N ++   CK   +  A  L   + ++G   N  TYN +IR     
Sbjct: 178 DQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEA 237

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
             + +A+ ++  M+   + VP   +Y  +I  LC+     EA  +L  +++ G +P ++T
Sbjct: 238 GRLPEAVRLVDGMR--AYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFT 295

Query: 396 YKLVCDA 402
           Y  + D 
Sbjct: 296 YNTIIDG 302



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 13/164 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA     +M Q    PD  ++N +I   CR G+   A  L +++E  G+    D  T+
Sbjct: 519 MEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATAD--TF 576

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI ++             +  +  A  +F  ML KG   D   Y  LIDG CKT  ++
Sbjct: 577 NTLIGAFSG-----------KLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVD 625

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           RA     +M KKG IP+  T+   I   +V + + +A+ ++  M
Sbjct: 626 RAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIM 669



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 32/217 (14%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F R  +++G +   + +  +G     T  +   LI     +  ++ A   F  M     R
Sbjct: 548 FCRNGDLEGAYLLFQKLEEKGYS--ATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHR 605

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            D Y Y V+I+  C+  N ++A   L +M   GF   P + T+  +I+S           
Sbjct: 606 ADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGF--IPSMSTFGRVINSL---------- 653

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             +  R+++A  +  +M+  G VP+VV  + +++   K   I     L +D+ KKG    
Sbjct: 654 -TVNHRVFQAVGIIHIMVKIGVVPEVV--DTILNADKK--EIAAPKILVEDLMKKG---- 704

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRK-----MQNLNH 353
            ++Y +    Y V++E  +  ++ RK     + NL+H
Sbjct: 705 HISYPT----YEVLHEGVRDNKLTRKHRMLLLNNLSH 737


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 127/269 (47%), Gaps = 31/269 (11%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G +    + T LIK L  E  ++EA   F RM++  C P+   Y  +I  LC+ GN N A
Sbjct: 156 GYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIA 215

Query: 224 RFLLEQM----ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI----------- 268
             L ++M       G  C P V TY+I+I   CK G +   ++                 
Sbjct: 216 LKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISY 275

Query: 269 ------------W-EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                       W ++ HLF  M+ +G  PD+V ++ LID  CK  ++  A +L + M +
Sbjct: 276 STLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQ 335

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRV 374
           +G +PN +TYNS I  + +V +++ A E+   M   + G+ P   SYT +I+  C+  +V
Sbjct: 336 RGIVPNLITYNSLIDGFCMVGDLNSARELFLSMP--SKGLEPDEISYTTLINGYCKTWKV 393

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDAL 403
            EA +   E++  G  P   TY  +   L
Sbjct: 394 KEAMNLYNEMLQVGKSPNVTTYGTLLKGL 422



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 106/215 (49%), Gaps = 18/215 (8%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           +A   F  M +    P + ++N ++  L ++ ++++   L  +M L G    PD++T +I
Sbjct: 74  QAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLS--PDLFTLSI 131

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           L +  C              R+ EA      +L +G++P+VV Y  LI G C  +RI  A
Sbjct: 132 LANCLCNV-----------NRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEA 180

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN--LNHGV---PTSSSY 361
             LF  M K GC PN VTY + I+       ++ A+++ ++M N    +GV   P   +Y
Sbjct: 181 TRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITY 240

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           + II  LC+ GR  EA++   E+   G +P   +Y
Sbjct: 241 SIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISY 275



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 132/291 (45%), Gaps = 42/291 (14%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L D S+ G        + + +I  L + G  +EA   F  MK     PDV +Y+ +I+
Sbjct: 221 EMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIH 280

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW--- 269
             C  G +++++ L ++M   G +  PD+ T+++LI + CK G  T  +K +   I    
Sbjct: 281 GFCCAGKWDQSKHLFDEMVDQGVQ--PDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGI 338

Query: 270 ---------------------EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
                                 A  LF  M  KG  PD ++Y  LI+G CKT++++ A+ 
Sbjct: 339 VPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMN 398

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHA 367
           L+++M + G  PN  TY + ++      ++  A ++   M+   +GV  +S  Y   +  
Sbjct: 399 LYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMK--TYGVSANSQIYGIFLDG 456

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRK 418
           LC+   + EA +   EL       + Y +KL        E  S L DGL K
Sbjct: 457 LCKNDCLFEAMELFNEL-------KSYNFKL------NIENYSCLIDGLCK 494



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 20/240 (8%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           SS   L+  L +    ++  + +  M+     PD++  +++ N LC V   ++A   +  
Sbjct: 92  SSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAG 151

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           +   G+   P+V TYT LI   C           +  RI EA  LF  M   G  P+ V 
Sbjct: 152 ILRRGYI--PNVVTYTTLIKGLC-----------MEHRISEATRLFLRMQKLGCTPNAVT 198

Query: 290 YNCLIDGCCKTYRIERAL----ELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIE 343
           Y  LI G C+T  +  AL    E+ +D ++ G  C P  +TY+  I     V   D+A E
Sbjct: 199 YGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKE 258

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  +M+     +P   SY+ +IH  C AG+  +++    E+VD G  P   T+ ++ D L
Sbjct: 259 LFEEMKAQGM-IPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTL 317



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 126/320 (39%), Gaps = 64/320 (20%)

Query: 150 GLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           G WD       +M  +G    + T SV  LI  L +EG V EA      M Q    P++ 
Sbjct: 286 GKWDQSKHLFDEMVDQGVQPDMVTFSV--LIDTLCKEGKVTEAKKLLEVMIQRGIVPNLI 343

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFR-------------C--------------- 237
            YN +I+  C VG+ N AR L   M   G               C               
Sbjct: 344 TYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEM 403

Query: 238 -----PPDVYTYTILISSYCKYGMQTGCRK----------AIRRRIW------------- 269
                 P+V TY  L+    + G     +K          +   +I+             
Sbjct: 404 LQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCL 463

Query: 270 -EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            EA  LF  +    F  ++  Y+CLIDG CK  ++E A ELF+ ++++G  P+ VTYN  
Sbjct: 464 FEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIM 523

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           I  +  V ++D A  +  KM+  N   P   +Y  ++   CE  ++ E    L ++V   
Sbjct: 524 IHGFCKVGQVDNANILFEKMEE-NGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKD 582

Query: 389 SVPREYTYKLVCDALNAAEE 408
             P   +  +V D L   E+
Sbjct: 583 VSPNAASCTIVVDMLCKDEK 602


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 126/262 (48%), Gaps = 16/262 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R  +     D L+ M  R     V T S   +I  L  +G ++ A++ F  M+    +
Sbjct: 203 ICRSGDTSLALDLLRKMEERNVKADVFTYST--IIDSLCRDGCIDAAISLFKEMETKGIK 260

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
             V  YN ++  LC+ G +N    LL+ M        P+V T+ +L+  + K G      
Sbjct: 261 SSVVTYNSLVRGLCKAGKWNDGALLLKDM--VSREIVPNVITFNVLLDVFVKEG------ 312

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EAN L++ M+ +G  P+++ YN L+DG C   R+  A  + D M +  C P+
Sbjct: 313 -----KLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VT+ S I+ Y +V  +D  +++ R +      V  + +Y+ ++   C++G++  A +  
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGL-VANAVTYSILVQGFCQSGKIKLAEELF 426

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+V  G +P   TY ++ D L
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGL 448



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 24/288 (8%)

Query: 142 FARGNNVKGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
             RG    G W+     LKDM  R     V T +V  L+ V  +EG + EA   +  M  
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV--LLDVFVKEGKLQEANELYKEMIT 326

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
               P++  YN +++  C     ++A  +L+ M     +C PD+ T+T LI  YC     
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN--KCSPDIVTFTSLIKGYC----- 379

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                 + +R+ +   +FR +  +G V + V Y+ L+ G C++ +I+ A ELF +M   G
Sbjct: 380 ------MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPIIHALCEAGRVL 375
            +P+ +TY   +       +++KA+E+   +Q   ++ G+     YT II  +C+ G+V 
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVM---YTTIIEGMCKGGKVE 490

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           +A +    L   G  P   TY ++   L      S  +  LRK   DG
Sbjct: 491 DAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 538



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 18/239 (7%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++A+A F  M + R  P +  ++   +A+ R   FN      +Q+EL G     ++YT  
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGI--AHNIYTLN 127

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           I+I+ +C+      C+      +     L ++M   G+ PD   +N LI G     ++  
Sbjct: 128 IMINCFCRC-----CKTCFAYSV-----LGKVMKL-GYEPDTTTFNTLIKGLFLEGKVSE 176

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A+ L D M + GC P+ VTYNS +       +   A++++RKM+  N       +Y+ II
Sbjct: 177 AVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADV-FTYSTII 235

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRI 420
            +LC  G +  A     E+   G      TY    + +C A    +   LL D + + I
Sbjct: 236 DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 15/204 (7%)

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           +++S+RG      T S+  L++   + G +  A   F  M      PDV  Y ++++ LC
Sbjct: 392 RNISKRGLVANAVTYSI--LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC 449

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
             G   KA  + E  +L   +    +  YT +I   CK G           ++ +A +LF
Sbjct: 450 DNGKLEKALEIFE--DLQKSKMDLGIVMYTTIIEGMCKGG-----------KVEDAWNLF 496

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             +  KG  P+V+ Y  +I G CK   +  A  L   M + G  PN  TYN+ IR +   
Sbjct: 497 CSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRD 556

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSS 359
            ++  + +++ +M++       SS
Sbjct: 557 GDLTASAKLIEEMKSCGFSADASS 580


>gi|222640196|gb|EEE68328.1| hypothetical protein OsJ_26607 [Oryza sativa Japonica Group]
          Length = 461

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 15/227 (6%)

Query: 173 TCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           T L+K L  E   + A+     RM +  C P V++YN+++  LC      +A  LL  M 
Sbjct: 137 TPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMA 196

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G  CPPDV +Y+ +I    K G              +A   +  ML +G +PDVV YN
Sbjct: 197 DDGGDCPPDVVSYSTIIDGLFKEGDSD-----------KAYSTYHEMLERGILPDVVTYN 245

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            ++   CK   +++A+++ + M K G +P+ +TYNS +  Y    +  +AI ++ KM   
Sbjct: 246 TIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKM--C 303

Query: 352 NHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           + GV P + +YT ++  LC+ GR +EAR  L  ++  G  P   TY 
Sbjct: 304 SDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYS 350



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 13/180 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S + +I  L +EG  ++A +T++ M +    PDV  YN ++ ALC+    +KA  +L +M
Sbjct: 208 SYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRM 267

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PD  TY  ++  YC  G              EA  +   M   G  PD V Y
Sbjct: 268 VKNGVM--PDCITYNSIVHGYCSSGQSK-----------EAIGILEKMCSDGVEPDAVTY 314

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             L+D  CK  R   A ++ D M K+G  PN +TY++ +  Y+    + +  +++  MQN
Sbjct: 315 TSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMQN 374



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 109/246 (44%), Gaps = 33/246 (13%)

Query: 188 ALATFYRMKQFR---CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           A++ F RM +       P ++ Y ++I   CR G  +     L  +   G+R  P ++T 
Sbjct: 79  AVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTP 138

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWE---ANHLFRL-MLFKGFV---------------- 284
             L+ S C     +     + RR+ E   A H+F   +L KG                  
Sbjct: 139 --LLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMA 196

Query: 285 -------PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
                  PDVV+Y+ +IDG  K    ++A   + +M ++G +P+ VTYN+ +        
Sbjct: 197 DDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQA 256

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           +DKA++++ +M   N  +P   +Y  I+H  C +G+  EA   L ++   G  P   TY 
Sbjct: 257 MDKAMDVLNRMVK-NGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYT 315

Query: 398 LVCDAL 403
            + D L
Sbjct: 316 SLMDYL 321


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 113/220 (51%), Gaps = 16/220 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V  AL     M Q    PDV+ YN+V+N LC+ G   +A+ +L QM   G  C PD+ T+
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRG--CLPDITTF 359

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI++ C     TG       R+ EA  L R +  KG  PDV  +N LI+  CK     
Sbjct: 360 NTLIAALC-----TG------NRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPH 408

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTP 363
            AL LF++M   GC P+ VTYN+ I     + ++ KA+++++ M+  + G P S+ +Y  
Sbjct: 409 LALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDME--STGCPRSTITYNT 466

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           II  LC+  R+ EA +   ++   G      T+  + D L
Sbjct: 467 IIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 506



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 132/290 (45%), Gaps = 28/290 (9%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           GN ++   D  + ++ +G    V T ++  LI  L + G  + AL  F  MK   C PD 
Sbjct: 369 GNRLEEALDLARQVTVKGVSPDVYTFNI--LINALCKVGDPHLALRLFEEMKNSGCTPDE 426

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             YN +I+ LC +G   KA  LL+ ME  G  CP    TY  +I   CK           
Sbjct: 427 VTYNTLIDNLCSLGKLGKALDLLKDMESTG--CPRSTITYNTIIDGLCK----------- 473

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           + RI EA  +F  M  +G   + + +N LIDG CK  +I+ A  L + M  +G  PN +T
Sbjct: 474 KMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNIT 533

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YNS + +Y    +I KA +++  M      V    +Y  +I+ LC+AGR   A   L  +
Sbjct: 534 YNSILTHYCKQGDIKKAADILETMTANGFEVDV-VTYGTLINGLCKAGRTQVALKVLRGM 592

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKV 434
              G  P    Y  V  +L             R  IRD +   FR++ +V
Sbjct: 593 RIKGMRPTPKAYNPVLQSLFR-----------RNNIRDALSL-FREMAEV 630



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 116/252 (46%), Gaps = 17/252 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D LKDM   G     +T +   +I  L ++  + EA   F +M       +   +N +I+
Sbjct: 447 DLLKDMESTGCPR--STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 504

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+    + A  L+ QM   G +  P+  TY  +++ YCK G            I +A 
Sbjct: 505 GLCKDKKIDDAFGLINQMISEGLQ--PNNITYNSILTHYCKQG-----------DIKKAA 551

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +   M   GF  DVV Y  LI+G CK  R + AL++   M  KG  P    YN  ++  
Sbjct: 552 DILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 611

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR-VLEARDFLAELVDGGSVP 391
              N I  A+ + R+M  +    P + +Y  +   LC  G  + EA DF+ E+VD G +P
Sbjct: 612 FRRNNIRDALSLFREMAEVGE-PPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIP 670

Query: 392 REYTYKLVCDAL 403
              +++++ + L
Sbjct: 671 EFSSFRMLAEGL 682



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 118/262 (45%), Gaps = 29/262 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+ VL E   +    + +  M     +PDV  +N ++ ALCR      A  +LE+M   G
Sbjct: 152 LLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRG 211

Query: 235 FRCPPDVYTYTILISSYCKYG------------MQTGCRKAIRR------------RIWE 270
               PD  T+T L+  + + G            ++ GC                  R+ +
Sbjct: 212 --VAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVED 269

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A    +  +  GF PD + YN  ++G C+   +  AL++ D M ++G  P+  TYN  + 
Sbjct: 270 ALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVN 329

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                 ++++A  ++ +M  ++ G +P  +++  +I ALC   R+ EA D   ++   G 
Sbjct: 330 CLCKNGQLEEAKGILNQM--VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGV 387

Query: 390 VPREYTYKLVCDALNAAEEPSL 411
            P  YT+ ++ +AL    +P L
Sbjct: 388 SPDVYTFNILINALCKVGDPHL 409



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 26/246 (10%)

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           ++N ALA       F   P+VY    +I  L  VG  +  + L+ +M   G +    V  
Sbjct: 60  MLNAALAR----DDFAPGPEVYEE--IIRKLGAVGALDLMKVLVAEMRREGHQVKLGV-V 112

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           ++ L S    Y  Q     A+   + +   LF      G   D V YN L++   +  ++
Sbjct: 113 HSFLDS----YEGQQLFDDAVDLILNQLQPLF------GIQADTVVYNHLLNVLVEGSKM 162

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYT 362
           +    ++ +M  +G  P+ VT+N+ ++     +++  A+ M+ +M   + GV P  +++T
Sbjct: 163 KLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS--SRGVAPDETTFT 220

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL---RKR 419
            ++    E G +  A    A +++ G    + T  ++   +N   +   ++D L   ++ 
Sbjct: 221 TLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVL---INGYCKLGRVEDALGYIQQE 277

Query: 420 IRDGIE 425
           I DG E
Sbjct: 278 IADGFE 283


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 122/263 (46%), Gaps = 29/263 (11%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+G      + + LIK     G++++A+  F  M+    +PDV  Y  VI ALCR+G  +
Sbjct: 391 GDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMD 450

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAI----- 264
            A     QM   G    PD Y Y  LI  +C +G            M  G R  I     
Sbjct: 451 DAMEKFNQMIDQGV--APDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSS 508

Query: 265 -------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    RI +A ++F L +  G  PD V Y+ L+DG C   ++E+AL +FD M   G
Sbjct: 509 IINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 568

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLE 376
             PN V Y + +  Y  +  ID+ + + R+M  L  G+ P++  Y  II  L  AGR + 
Sbjct: 569 IEPNVVVYGTLVNGYCKIGRIDEGLSLFREM--LQKGIKPSTILYNIIIDGLFVAGRTVP 626

Query: 377 ARDFLAELVDGGSVPREYTYKLV 399
           A+    E+ + G    + TY +V
Sbjct: 627 AKVKFHEMTESGIAINKCTYNIV 649



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 22/266 (8%)

Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+K   E    +EAL    +R  +  C PDV++Y++++ +LC  G   +A  LL  M   
Sbjct: 156 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 215

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C PDV  YT +I  + K G            + +A  LF+ M+ +G  PD+V Y+ +
Sbjct: 216 GAVCSPDVVAYTTVIDCFFKEG-----------DVNKACDLFKEMVQRGIPPDLVTYSSV 264

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +   CK   + +A      M  KG +P+  TYN+ I  YS   +  +A+ + ++M+   H
Sbjct: 265 VHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMR--RH 322

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
            + P   +   ++ +LC+ G++ EARD    +   G  P  ++YK++ +    A +  L+
Sbjct: 323 SILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGY--ATKGCLV 380

Query: 413 D--DGLRKRIRDGIE---YRFRQVMK 433
           D  D     + DGI    Y F  ++K
Sbjct: 381 DMTDLFDLMLGDGIAPDIYTFSVLIK 406



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 122/278 (43%), Gaps = 47/278 (16%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D L+ M+  G        + T +I    +EG VN+A   F  M Q    PD+  Y+ V++
Sbjct: 207 DLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVH 266

Query: 213 ALCRVGNFNKARFLLEQM---------------------------------ELPGFRCPP 239
           ALC+     KA   L QM                                 E+      P
Sbjct: 267 ALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILP 326

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           DV T  +L+ S CKYG           +I EA  +F  M  KG  PDV +Y  +++G   
Sbjct: 327 DVVTLNMLMGSLCKYG-----------KIKEARDVFDTMAMKGQNPDVFSYKIMLNGYAT 375

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTS 358
              +    +LFD M   G  P+  T++  I+ Y+    +DKA+ +  +M+  +HGV P  
Sbjct: 376 KGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMR--DHGVKPDV 433

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +YT +I ALC  G++ +A +   +++D G  P +Y Y
Sbjct: 434 VTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 471



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 18/236 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL+ M  +G   L    +   LI      G   EA+  F  M++    PDV   N+++ +
Sbjct: 280 FLRQMVNKG--VLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGS 337

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+ G   +AR + + M + G    PDV++Y I+++ Y       GC       + +   
Sbjct: 338 LCKYGKIKEARDVFDTMAMKGQN--PDVFSYKIMLNGYA----TKGC-------LVDMTD 384

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF LML  G  PD+  ++ LI        +++A+ +F++M   G  P+ VTY + I    
Sbjct: 385 LFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALC 444

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            + ++D A+E   +M  ++ GV P   +Y  +I   C  G +L+A++ + E+++ G
Sbjct: 445 RIGKMDDAMEKFNQM--IDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNG 498



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 103/229 (44%), Gaps = 14/229 (6%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG  +     + +I  L + G + +A   F         PD   Y+++++  C VG   K
Sbjct: 497 NGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEK 556

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  + + M   G    P+V  Y  L++ YCK G           RI E   LFR ML KG
Sbjct: 557 ALRVFDAMVSAGIE--PNVVVYGTLVNGYCKIG-----------RIDEGLSLFREMLQKG 603

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P  + YN +IDG     R   A   F +M + G   N+ TYN  +R +      D+AI
Sbjct: 604 IKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAI 663

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
            + ++++ +N  +   +  T +I  + +  RV EA+D  A +   G VP
Sbjct: 664 FLFKELRAMNVKIDIITLNT-MIAGMFQTRRVEEAKDLFASISRSGLVP 711



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 13/188 (6%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P  +TY IL+           C +A R  +  A   F  +L  G   D++  N L+ G C
Sbjct: 113 PTSHTYAILMDC---------CTRAHRPELALA--FFGQLLRTGLRVDIIIANHLLKGFC 161

Query: 299 KTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-P 356
           +  R + AL+ L     + GC+P+  +Y+  ++      +  +A +++R M        P
Sbjct: 162 EAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSP 221

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              +YT +I    + G V +A D   E+V  G  P   TY  V  AL  A      +  L
Sbjct: 222 DVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFL 281

Query: 417 RKRIRDGI 424
           R+ +  G+
Sbjct: 282 RQMVNKGV 289



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 19/145 (13%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF---RCPP 239
           G ++E L+ F  M Q   +P    YN++I+ L   G    A+    +M   G    +C  
Sbjct: 587 GRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKC-- 644

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
              TY I++  + K            R   EA  LF+ +       D++  N +I G  +
Sbjct: 645 ---TYNIVLRGFFK-----------NRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQ 690

Query: 300 TYRIERALELFDDMNKKGCIPNRVT 324
           T R+E A +LF  +++ G +P  VT
Sbjct: 691 TRRVEEAKDLFASISRSGLVPCVVT 715


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 131/282 (46%), Gaps = 28/282 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             RGN V     F ++  + G      + S   LI+ L   G V++A   F  M+ F C 
Sbjct: 212 LVRGNQVDEAVCFFRE--QMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCS 269

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------ 255
           PDV  YN +IN  CRV   ++   LL+++ L      PDV TYT +IS YCK G      
Sbjct: 270 PDVITYNTLINGFCRVNEVDRGHDLLKEL-LSKNDLSPDVVTYTSIISGYCKLGKMEKAS 328

Query: 256 ------MQTGCR-KAIRRRIW-----------EANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                 + +G +  A    I             A +++  ML  G  PD++ +  LIDG 
Sbjct: 329 ILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGH 388

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C+T ++ER+L+L+ ++N +   PN  T+          N + +A   +R ++   H V  
Sbjct: 389 CRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLK-WRHIVAQ 447

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
              Y P+I   C+AG V EA   LAE+ +    P + TY ++
Sbjct: 448 PFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTIL 489



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 125/284 (44%), Gaps = 19/284 (6%)

Query: 120 HWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL 179
           H ++   D+F   +T   +     RG N   L      +SR       +  + + L++ L
Sbjct: 89  HSLDACLDYFSKTLT-PSIAFEVVRGLNNPELALKFFQLSRVNLNLCHSFRTYSFLLRSL 147

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
            E G    A A +  M      PD      ++++    G FN AR  ++ +E        
Sbjct: 148 SEMGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFNIARTWVDGVEF------- 200

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
            +  Y  L++   +             ++ EA   FR  +      D  ++N LI G C+
Sbjct: 201 SLVVYNKLLNQLVR-----------GNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCR 249

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             ++++A ELF++M   GC P+ +TYN+ I  +  VNE+D+  ++++++ + N   P   
Sbjct: 250 IGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVV 309

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +YT II   C+ G++ +A      ++  G  P  +T+ ++ +  
Sbjct: 310 TYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGF 353



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 120/263 (45%), Gaps = 34/263 (12%)

Query: 142 FARGNNVKGLWDFLKDMSRRGN--GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           F R N V    D LK++  + +   ++VT +S+   I    + G + +A   F  M    
Sbjct: 282 FCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSI---ISGYCKLGKMEKASILFNNMISSG 338

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
            +P+ + +N++IN   +VG+   A  + E+M L G  CPPD+ T+T LI  +C+ G    
Sbjct: 339 IKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLG--CPPDIITFTSLIDGHCRTGKVER 396

Query: 260 CRK-----------------AI-------RRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
             K                 AI         R+ EA    R + ++  V     YN +ID
Sbjct: 397 SLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVID 456

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG- 354
           G CK   ++ A  +  +M +K C P+++TY   I  + +   + +AI +  +M  L  G 
Sbjct: 457 GFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRM--LGTGC 514

Query: 355 VPTSSSYTPIIHALCEAGRVLEA 377
            P S + T +I  L +AG   EA
Sbjct: 515 APDSITMTSLISCLLKAGMPNEA 537


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 130/256 (50%), Gaps = 19/256 (7%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMK---QFRCRPDVYAYNVVINALCRVGNFNKAR 224
           T  S   ++ V+ +EGL + AL  FY      +    P+V ++N+VI A+C++G  ++A 
Sbjct: 134 TVRSFNSVLNVIIQEGLFHRALE-FYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAI 192

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            +  +M +   +C PDV+TY  L+   CK             RI EA  L   M  +G  
Sbjct: 193 EVFREMAIQ--KCEPDVFTYCTLMDGLCK-----------EDRIDEAVLLLDEMQIEGCF 239

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P  V +N LI+G CK   + R  +L D+M  KGC+PN VTYN+ I    +  ++DKA+ +
Sbjct: 240 PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSL 299

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           + +M   +  VP   +Y  +I+ L + GR ++    L+ L + G    EY Y  +   L 
Sbjct: 300 LDRMV-ASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGL- 357

Query: 405 AAEEPSLLDDGLRKRI 420
             EE S    GL K++
Sbjct: 358 FKEEKSEEAMGLWKKM 373



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 111/232 (47%), Gaps = 14/232 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L  +G +++A++   RM   +C P+   Y  +IN L + G       LL  +E  G
Sbjct: 283 IINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERG 342

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                + Y Y+ LIS   K             +  EA  L++ M+ KG  P++V Y+ LI
Sbjct: 343 HH--ANEYAYSTLISGLFK-----------EEKSEEAMGLWKKMVEKGCQPNIVVYSALI 389

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG C+  +++ A E+  +M  KGC PN  TY+S I+ +       KAI + ++M   N+ 
Sbjct: 390 DGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAK-NNC 448

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           VP    Y+ +IH LCE G++ EA      ++  G  P    Y  +   L  A
Sbjct: 449 VPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNA 500



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 128/267 (47%), Gaps = 17/267 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +G +V G+   L  +  RG+       + + LI  L +E    EA+  + +M +  C+P+
Sbjct: 325 QGRSVDGV-HLLSSLEERGHH--ANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPN 381

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +  Y+ +I+ LCR G  ++A+ +L +M   G  C P+ +TY+ LI  + K G     +KA
Sbjct: 382 IVVYSALIDGLCREGKLDEAKEILCEMVNKG--CTPNAFTYSSLIKGFFKTG---NSQKA 436

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
           IR  +W+       M     VP+ + Y+ LI G C+  ++  A+ ++  M  +G  P+ V
Sbjct: 437 IR--VWKE------MAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVV 488

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQ-NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
            Y+S I        ++  +++  +M    +   P   +Y  ++ ALC+   +  A D L 
Sbjct: 489 AYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLN 548

Query: 383 ELVDGGSVPREYTYKLVCDALNAAEEP 409
            ++D G  P   T  +  +AL     P
Sbjct: 549 SMLDRGCNPDLITCNIFLNALREKLNP 575



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 18/157 (11%)

Query: 142 FARGNNVKGL--WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           F  GN+ K +  W   K+M++  N  +      + LI  L E+G + EA+  +  M    
Sbjct: 428 FKTGNSQKAIRVW---KEMAK--NNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRG 482

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
            RPDV AY+ +I+ LC  G+      L  +M        PDV TY IL+ + CK      
Sbjct: 483 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCK------ 536

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                +  I  A  L   ML +G  PD++  N  ++ 
Sbjct: 537 -----QNSISHAIDLLNSMLDRGCNPDLITCNIFLNA 568


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 123/240 (51%), Gaps = 16/240 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   +I  L + G    A+  F +M+Q R +P+V  YN +I++LC+    N+A   L +M
Sbjct: 203 SYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEM 262

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G   PPDV TY  ++  +C  G           ++ EA  LF+ M+ +  +PD V +
Sbjct: 263 VDRGI--PPDVVTYNTILHGFCSLG-----------QLNEATRLFKEMVGRNVMPDTVTF 309

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L+DG CK   +  A  + + M +KG  PN  TYN+ +  Y + N++D+AI+++  M  
Sbjct: 310 NILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIM-- 367

Query: 351 LNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
           +  G  P  SSY  +I+  C++ R+ EA+  L+E+ +    P   TY  +   L     P
Sbjct: 368 IGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRP 427



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 120/240 (50%), Gaps = 20/240 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA+     M    C P++ +YN++IN  C+    N+A+ LL +M        PD  TY
Sbjct: 357 MDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNL--TPDTVTY 414

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           + L+   C+ G           R  EA +LF+ M   G +PD++AY+ L+DG CK   ++
Sbjct: 415 STLMQGLCQVG-----------RPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLD 463

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            AL+L  +M+++   PN + Y   IR   +  +++ A E+  K+     G+ P   +Y  
Sbjct: 464 EALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLS--ADGIRPDIWTYNV 521

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS----LLDDGLRKR 419
           +I  L + G   EA +F  ++ D G +P   +Y ++       ++ S    L+D+ + KR
Sbjct: 522 MIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKR 581



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 14/232 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S+  LI  L     V+ A++   +M +   +PD   +N +IN LC  G   +A  L  +M
Sbjct: 133 SLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEM 192

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P+V +Y  +I+  CK G       A+R        +FR M      P+VV Y
Sbjct: 193 VWSGHE--PNVISYNTVINGLCKNGNTI---MAVR--------VFRKMEQNRGKPNVVTY 239

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N +ID  CK   +  A+E   +M  +G  P+ VTYN+ +  +  + ++++A  + ++M  
Sbjct: 240 NTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVG 299

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            N  +P + ++  ++  LC+ G V EAR     + + G+ P  YTY  + D 
Sbjct: 300 RNV-MPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDG 350



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 14/215 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL +FYRM +   RP V  +   + ++ +   ++ A  L  QM+L  F    +VY+ 
Sbjct: 77  IDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDL--FGVTHNVYSL 134

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            +LI+  C+          +   +     +F+L    G  PD + +N LI+G C   +I+
Sbjct: 135 NVLINCLCRL-------SHVDFAVSVMGKMFKL----GIQPDAITFNTLINGLCNEGKIK 183

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A+ LF++M   G  PN ++YN+ I           A+ + RKM+  N G P   +Y  I
Sbjct: 184 EAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQ-NRGKPNVVTYNTI 242

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           I +LC+   V EA +FL+E+VD G  P   TY  +
Sbjct: 243 IDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTI 277



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 16/219 (7%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           + A++   +M  F    +VY+ NV+IN LCR+ + + A  ++ +M   G +  PD  T+ 
Sbjct: 113 SSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQ--PDAITFN 170

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            LI+  C  G           +I EA  LF  M++ G  P+V++YN +I+G CK      
Sbjct: 171 TLINGLCNEG-----------KIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIM 219

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPI 364
           A+ +F  M +    PN VTYN+ I        +++A+E + +M  ++ G+P    +Y  I
Sbjct: 220 AVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEM--VDRGIPPDVVTYNTI 277

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +H  C  G++ EA     E+V    +P   T+ ++ D L
Sbjct: 278 LHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGL 316



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 14/235 (5%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   L+  L +EG+V+EA      M +    P+ Y YN +++  C     ++A  +L 
Sbjct: 306 TVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLG 365

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M   G  C P++ +Y ILI+ YCK            +R+ EA  L   M  K   PD V
Sbjct: 366 IM--IGKGCAPNLSSYNILINGYCK-----------SKRMNEAKRLLSEMSEKNLTPDTV 412

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y+ L+ G C+  R   AL LF +M   G +P+ + Y+  +  +     +D+A++++++M
Sbjct: 413 TYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEM 472

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                  P    YT +I  +  AG++  A++  ++L   G  P  +TY ++   L
Sbjct: 473 HE-RRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGL 526



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 105/240 (43%), Gaps = 14/240 (5%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G     SS   LI    +   +NEA      M +    PD   Y+ ++  LC+VG   
Sbjct: 369 GKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPR 428

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A  L ++M   G    PD+  Y+IL+  +CK+G            + EA  L + M  +
Sbjct: 429 EALNLFKEMCSSGLL--PDLMAYSILLDGFCKHG-----------HLDEALKLLKEMHER 475

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
              P+++ Y  LI G     ++E A ELF  ++  G  P+  TYN  I+        D+A
Sbjct: 476 RIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEA 535

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
            E  RKM++ +  +P S SY  II    +      A   + E+V         T++++ D
Sbjct: 536 YEFFRKMED-DGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLD 594


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 140/298 (46%), Gaps = 39/298 (13%)

Query: 128 FFHNEMTCK---------EMGI--------VFARGNNVKGLWDFLK----DMSRRGNGEL 166
           F  +E+TCK         +MGI           RG    G W  +K    +M  +     
Sbjct: 234 FCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPN 293

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           V T +V  LI     +G + EA   F  M +   +PD+  +N +I+  C  GN  +AR L
Sbjct: 294 VYTFNV--LIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKL 351

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
            + +   G    PDV++YTILI  YCK            +RI EA  LF  M  K  V D
Sbjct: 352 FDTVFERGIL--PDVWSYTILIIGYCKC-----------KRIDEAVSLFNEMRCKNMVLD 398

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           +V Y+ LIDG CK+ RI  A ELF  +N  G  PN +TYN  I  +  + +ID  IE+ +
Sbjct: 399 IVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFK 458

Query: 347 KMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            M     G+ PT  +Y  +I+  C++ R+ EA + L+ +      P   TY  + D L
Sbjct: 459 LM--CGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGL 514



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 91/191 (47%), Gaps = 16/191 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA++ F  M+      D+  Y+ +I+ LC+ G  + A  L   +   G   PP+V TY
Sbjct: 380 IDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDG--PPPNVITY 437

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI ++CK            + I     LF+LM  KG  P V+ YN LI+G CK+ RI 
Sbjct: 438 NILIDAFCKI-----------QDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIR 486

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTP 363
            A+ L   M  K   P+ +TYNS          I  A E+ + M     G P   ++Y  
Sbjct: 487 EAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMH--VGGPPVDVATYNV 544

Query: 364 IIHALCEAGRV 374
           ++ A C+A  V
Sbjct: 545 LLDAFCKAQDV 555



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 13/164 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G ++ A   F  +      P+V  YN++I+A C++ + +    L + M   G
Sbjct: 405 LIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKG 464

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P V TY ILI+ YCK            +RI EA +L  +M  K   PD + YN L 
Sbjct: 465 LT--PTVLTYNILINGYCK-----------SKRIREAMNLLSVMQSKNLAPDSITYNSLF 511

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           DG CK+ RI  A ELF  M+  G   +  TYN  +  +    ++
Sbjct: 512 DGLCKSGRISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQDV 555



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 110/252 (43%), Gaps = 29/252 (11%)

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
           K+L     +++A+  F  +   +  P V  +N +I ++ ++ +   A  LL+QM   G  
Sbjct: 57  KILSSFNGIDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVT 116

Query: 237 CPPDVYTYTILISSYC---KYGMQTGCRKAIRRRIWEANHLFRLMLFKGF---------- 283
             P ++T +I I+ YC   + G        + +R ++ N++    + KG           
Sbjct: 117 --PSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAM 174

Query: 284 -----------VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
                      + D V Y  LI+G CK  R   A +L  +M  +   PN V YN  I  +
Sbjct: 175 DFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSF 234

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                  KA ++  K+ ++  G+ P   +YT +I   C  G+  E +  + E+V+    P
Sbjct: 235 CKDELTCKARDLYLKIVDM--GIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINP 292

Query: 392 REYTYKLVCDAL 403
             YT+ ++ DA 
Sbjct: 293 NVYTFNVLIDAF 304



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 109/276 (39%), Gaps = 30/276 (10%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKV-----LGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
            LK M  +G    VT S  T  I +     LGE G     L    +      +P+     
Sbjct: 106 LLKQMVFKG----VTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGY---QPNNITLT 158

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
            V+  LC  G   KA    + +   G     D   Y  LI+  CK G           R 
Sbjct: 159 TVMKGLCINGEVQKAMDFHDNVAAQGMLL--DEVCYGTLINGLCKIG-----------RS 205

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +A  L + M  +   P++V YN +ID  CK     +A +L+  +   G  P+ +TY S 
Sbjct: 206 IDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSL 265

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           IR +    +  +  ++M +M N N   P   ++  +I A C  G+++EA+     +V  G
Sbjct: 266 IRGFCRTGQWGEVKQLMCEMVNKNIN-PNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRG 324

Query: 389 SVPREYTYKLV----CDALNAAEEPSLLDDGLRKRI 420
             P   T+  +    C   N  E   L D    + I
Sbjct: 325 QQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGI 360



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G   T  +   LI    +   + EA+     M+     PD   YN + + LC+ G  +
Sbjct: 462 GKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRIS 521

Query: 222 KARFLLEQMELPGFRCPP-DVYTYTILISSYCK 253
            A  L + M + G   PP DV TY +L+ ++CK
Sbjct: 522 DAWELFKVMHVGG---PPVDVATYNVLLDAFCK 551


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 114/234 (48%), Gaps = 19/234 (8%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T  I  L + G V +AL     M +  C PDV ++N VIN LC+    ++A  LL  ME 
Sbjct: 222 TVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEA 281

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE-ANHLFRLMLFKGFVPDVVAYN 291
            G  C P+  ++  LI   C+ G             W+ A   F+ ML +G  P VV YN
Sbjct: 282 KG--CSPNAISFNTLICGQCRAGK------------WKKAMTTFKEMLKRGVKPTVVTYN 327

Query: 292 CLIDGCCKTY---RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            L+DG CK     RI+ A+ LFD M +KG +P+ VTY++ I       ++D A  ++  M
Sbjct: 328 ILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAM 387

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +     +P   +Y  +I  LC   +V EA +    +V+ G VP   TY  +  A
Sbjct: 388 EA-KGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIISA 440



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 125/277 (45%), Gaps = 43/277 (15%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA     RM      PDV  YN ++N LC+ G  ++AR L+      GF   P+V TY
Sbjct: 96  LDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGF--SPNVITY 150

Query: 245 TILISSYCKYGMQTGCRKAIR---------------------------RRIWEANHLFRL 277
           + LIS  C+     G  +A++                            R+ EA  LF  
Sbjct: 151 STLISGLCRE--LRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSG 208

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           ++  G  PD + Y   IDG CK  R+E AL +  DM++KGC+P+ V++N+ I        
Sbjct: 209 LVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKR 268

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           +D+A  ++  M+      P + S+  +I   C AG+  +A     E++  G  P   TY 
Sbjct: 269 VDEAEVLLSGMEAKGCS-PNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYN 327

Query: 398 LVCDALNAA-------EEPSLLDDGLRK-RIRDGIEY 426
           ++ D L  A       E  +L D  + K R+ D + Y
Sbjct: 328 ILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTY 364



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 112/237 (47%), Gaps = 17/237 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L +E  VNEA   F  + +    PD   Y V I+ LC+ G    A  +L+ M+  G
Sbjct: 189 LIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKG 248

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PDV ++  +I+  CK            +R+ EA  L   M  KG  P+ +++N LI
Sbjct: 249 --CVPDVVSHNAVINGLCK-----------EKRVDEAEVLLSGMEAKGCSPNAISFNTLI 295

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE---IDKAIEMMRKMQNL 351
            G C+  + ++A+  F +M K+G  P  VTYN  +       +   I +AI +   M   
Sbjct: 296 CGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEK 355

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
              VP   +Y+ +I  L +AG++ +AR  L  +   G +P  YTY  +   L   E+
Sbjct: 356 GR-VPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEK 411



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 125/252 (49%), Gaps = 27/252 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L   G +++A A + RM +    PDV  YN +++  C+VG  ++A  + +     G
Sbjct: 16  LLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRG 75

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE------------ANHLFR------ 276
           F   PDV TY  LI+ +CK       ++ ++R + E             N L +      
Sbjct: 76  F--VPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDE 133

Query: 277 ---LMLFKGFVPDVVAYNCLIDGCCKTYR-IERALELFDDMNKKGCIPNRVTYNSFIRYY 332
              L++ KGF P+V+ Y+ LI G C+  R +  AL+LF  + K+G  P   TYN  I   
Sbjct: 134 ARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGL 193

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
              + +++A E+   +  + HG+ P + +YT  I  LC+AGRV +A   L ++ + G VP
Sbjct: 194 LKEDRVNEAFELFSGL--VKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVP 251

Query: 392 REYTYKLVCDAL 403
              ++  V + L
Sbjct: 252 DVVSHNAVINGL 263



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 20/211 (9%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M++    P+   YN +++ LC  G  + A+ L E+M   G+   PDV TY  L+  +CK 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGY--SPDVVTYNTLLHGFCKV 58

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G            + EA  +F   + +GFVPDVV YN LI+G CK  +++ A  +   M 
Sbjct: 59  G-----------ELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMV 107

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGR 373
            +  +P+ VTYNS +        +D+A     +M  ++ G  P   +Y+ +I  LC   R
Sbjct: 108 SENLVPDVVTYNSLVNGLCKNGRVDEA-----RMLIVDKGFSPNVITYSTLISGLCRELR 162

Query: 374 -VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            V EA      ++  G  P   TY ++ D L
Sbjct: 163 GVSEALKLFGSVLKQGYEPEVPTYNILIDGL 193



 Score = 42.0 bits (97), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           M K G  PNR+TYN+ +        +  A  +  +M    +  P   +Y  ++H  C+ G
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYS-PDVVTYNTLLHGFCKVG 59

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
            + EA       V  G VP   TY  + +    A++   LD+  R
Sbjct: 60  ELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADK---LDEAQR 101


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 132/268 (49%), Gaps = 22/268 (8%)

Query: 141 VFARGNNVKGLW----DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196
           V   G    G W      L DM RRG    V T ++  LI  L  +GL+  A+    +M 
Sbjct: 159 VLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNI--LINFLCRKGLLGRAIDVLEKMP 216

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
           +  C P+  +YN +++  C+     +A   L +M   G  C PD+ TY  L+++ CK G 
Sbjct: 217 KHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRG--CYPDIVTYNTLLTALCKDG- 273

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                     ++  A  L   +  KG  P ++ YN +IDG  K  + ++A +L D+M  K
Sbjct: 274 ----------KVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAK 323

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVL 375
           G  P+ +TY+S +   S   ++D+AI+    ++ L  GV P + +Y  I+  LC+A +  
Sbjct: 324 GLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVL--GVKPNAITYNAIMLGLCKARKTD 381

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
            A DFLA +V  G  P E +Y ++ + L
Sbjct: 382 RAIDFLAYMVQRGCKPTEASYTILIEGL 409



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 120/263 (45%), Gaps = 16/263 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R   ++  + FL+ M  RG  ++      T LI+   + G   +A      ++     
Sbjct: 94  LVRNGELEEGFRFLESMVYRG--DIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAV 151

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  YNV+I+ +C  G +  A  LL  M   G  C P V T+ ILI+  C+ G+     
Sbjct: 152 PDVITYNVLISGMCSTGRWMDAEKLLADMVRRG--CSPSVVTFNILINFLCRKGL----- 204

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 +  A  +   M   G  P+ ++YN L+ G CK  ++ERA+E    M  +GC P+
Sbjct: 205 ------LGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPD 258

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VTYN+ +       ++D A+E++ ++ +     P   +Y  +I  L + G+  +A   L
Sbjct: 259 IVTYNTLLTALCKDGKVDAAVELLNQLSSKGCS-PVLITYNTVIDGLSKVGKTDQAAKLL 317

Query: 382 AELVDGGSVPREYTYKLVCDALN 404
            E+   G  P   TY  +   L+
Sbjct: 318 DEMRAKGLKPDIITYSSLVGGLS 340



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 94/194 (48%), Gaps = 16/194 (8%)

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           ++ L R G   +    LE M   G    PD+   T LI  +CK G     RKA R     
Sbjct: 91  LSKLVRNGELEEGFRFLESMVYRGD--IPDIIPCTSLIRGFCKIGKT---RKATR----- 140

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
              +  ++   G VPDV+ YN LI G C T R   A +L  DM ++GC P+ VT+N  I 
Sbjct: 141 ---IMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILIN 197

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
           +      + +AI+++ KM    HG  P S SY P++H  C+  ++  A ++L ++   G 
Sbjct: 198 FLCRKGLLGRAIDVLEKMP--KHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGC 255

Query: 390 VPREYTYKLVCDAL 403
            P   TY  +  AL
Sbjct: 256 YPDIVTYNTLLTAL 269



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 99/207 (47%), Gaps = 15/207 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   ++   ++L  M+ RG    + T +   L+  L ++G V+ A+    ++    C 
Sbjct: 234 FCKEKKMERAIEYLGKMTSRGCYPDIVTYNT--LLTALCKDGKVDAAVELLNQLSSKGCS 291

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P +  YN VI+ L +VG  ++A  LL++M   G +  PD+ TY+ L+    + G      
Sbjct: 292 PVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLK--PDIITYSSLVGGLSREG------ 343

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA   F  +   G  P+ + YN ++ G CK  + +RA++    M ++GC P 
Sbjct: 344 -----KVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPT 398

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKM 348
             +Y   I   +      +A+E++ ++
Sbjct: 399 EASYTILIEGLAYEGLAKEALELLNEL 425


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+ VL E   +  AL+ F ++ +F   P+   YN++I A C     + A FL  +M   G
Sbjct: 209 LLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQG 268

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PDV TY+IL        MQ  CRK+   ++  A  +   ML KG+VPD + YN L+
Sbjct: 269 --CIPDVETYSIL--------MQGLCRKS---QVKTALGVLDEMLNKGYVPDALTYNTLL 315

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +  C+   +  A  L   M   GC P+ + YN+ I  +        A +++R M   N  
Sbjct: 316 NSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPE-NGC 374

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +P + SY  +++ LC  G+  EA+DF+ E++  G +P    Y L+   L
Sbjct: 375 LPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIYHLLITGL 423



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 140/315 (44%), Gaps = 16/315 (5%)

Query: 89  NIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNV 148
           NI N+  +L PA              A E +    R   F H+  T   +     R    
Sbjct: 90  NIRNHSRMLTPARVHKLIASQTDALLAMEIFEVASRQPGFKHSYSTYHTLICKLGRARQF 149

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           K +   ++ M  R +G   T      +I++ GE G+ NEA+  F++M +F   P    +N
Sbjct: 150 KTMEGLIQQM--RKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFN 207

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
           V++  L        A  L ++  L  F   P+  TY ILI ++C              ++
Sbjct: 208 VLLIVLIEHKCLETALSLFKK--LHEFGISPNTRTYNILIRAHCH-----------SDKL 254

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
             A  LF  M  +G +PDV  Y+ L+ G C+  +++ AL + D+M  KG +P+ +TYN+ 
Sbjct: 255 SHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTL 314

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +        + +A  ++ KM+ +    P   +Y  +I   C  GR L+A   L ++ + G
Sbjct: 315 LNSLCRKMNLREAYRLLSKMKVMGCN-PDVINYNTVITGFCREGRALDACQILRDMPENG 373

Query: 389 SVPREYTYKLVCDAL 403
            +P   +Y+ + + L
Sbjct: 374 CLPNALSYRTLVNGL 388


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 135/269 (50%), Gaps = 22/269 (8%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           L +M R+G      T +   L+    + G  ++AL     M +    PDV  Y  +IN +
Sbjct: 296 LAEMDRKGFAPDGVTYNT--LVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTM 353

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           C+ GN N+A    +QM + G R  P+  TYT LI+ + + G           RIW+    
Sbjct: 354 CKAGNLNRAMEFFDQMHVRGLR--PNGVTYTSLINGFSQKGFMDEAY-----RIWDE--- 403

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
              M+  GF P +V YN L++G C + R+E A+ L   M  KG  P+ V+Y++ I  +  
Sbjct: 404 ---MIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR 460

Query: 335 VNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             E+D+A +M  +M  +  GV P + +Y+ +I  LCE  R+ EA D   E+++   +P E
Sbjct: 461 YQELDRAFQMNAEM--VEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDE 518

Query: 394 YTYKLV----CDALNAAEEPSLLDDGLRK 418
           +TY  +    C   +  E  +L D+ ++K
Sbjct: 519 FTYTSLINGYCKEGDLNEALNLHDEMIKK 547



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 127/261 (48%), Gaps = 29/261 (11%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           +  S V C   V+  E +  E +A+   +       +V++YN++I   C  GN       
Sbjct: 173 ILDSIVRCRKPVIFAEKVYREMIASGVSL-------NVFSYNILIRGFCAAGNLEMGLRF 225

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
            E+ME    RC P+V TY  +I +YCK            +RI EA  L R M  +G  P+
Sbjct: 226 FEEMERN--RCLPNVVTYNTVIGAYCKL-----------KRIDEAFKLLRSMGLEGLEPN 272

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           ++ YN +I+G C+  RIE    +  +M++KG  P+ VTYN+ +  Y  V    +A+ +  
Sbjct: 273 LLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHS 332

Query: 347 KMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           +M  L +G+P    +YT +I+ +C+AG +  A +F  ++   G  P   TY      +N 
Sbjct: 333 EM--LRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYT---SLING 387

Query: 406 AEEPSLLDDGLR---KRIRDG 423
             +   +D+  R   + IR G
Sbjct: 388 FSQKGFMDEAYRIWDEMIRSG 408



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 124/242 (51%), Gaps = 14/242 (5%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG      + T LI  + + G +N A+  F +M     RP+   Y  +IN   + G  ++
Sbjct: 337 NGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDE 396

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  + ++M   GF  PP + TY  L++ +C  G           R+ EA  L R M  KG
Sbjct: 397 AYRIWDEMIRSGF--PPTIVTYNALLNGHCVSG-----------RMEEAIGLLRGMEGKG 443

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PDVV+Y+ +I G C+   ++RA ++  +M +KG  P+ +TY+S I+       +++A 
Sbjct: 444 LSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEAC 503

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           ++ ++M N    +P   +YT +I+  C+ G + EA +   E++  G +P   TY ++ + 
Sbjct: 504 DLFQEMLN-KSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLING 562

Query: 403 LN 404
           LN
Sbjct: 563 LN 564



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 112/241 (46%), Gaps = 14/241 (5%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
            +G  +   S   LI+     G +   L  F  M++ RC P+V  YN VI A C++   +
Sbjct: 196 ASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRID 255

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A  LL  M L G    P++ TY ++I+  C+ G           RI E + +   M  K
Sbjct: 256 EAFKLLRSMGLEGLE--PNLLTYNMVINGLCRVG-----------RIEETSGVLAEMDRK 302

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           GF PD V YN L++G CK     +AL L  +M + G  P+ VTY S I        +++A
Sbjct: 303 GFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRA 362

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           +E   +M  +    P   +YT +I+   + G + EA     E++  G  P   TY  + +
Sbjct: 363 MEFFDQMH-VRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLN 421

Query: 402 A 402
            
Sbjct: 422 G 422



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 139/362 (38%), Gaps = 101/362 (27%)

Query: 144 RGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +  N+    +F   M  RG   NG      + T LI    ++G ++EA   +  M +   
Sbjct: 355 KAGNLNRAMEFFDQMHVRGLRPNG-----VTYTSLINGFSQKGFMDEAYRIWDEMIRSGF 409

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----- 255
            P +  YN ++N  C  G   +A  LL  ME  G    PDV +Y+ +I+ +C+Y      
Sbjct: 410 PPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGL--SPDVVSYSTIIAGFCRYQELDRA 467

Query: 256 ----------------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
                                 +Q  C +   RR+ EA  LF+ ML K  +PD   Y  L
Sbjct: 468 FQMNAEMVEKGVSPDAITYSSLIQGLCEQ---RRLNEACDLFQEMLNKSLLPDEFTYTSL 524

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYN--------------------------- 326
           I+G CK   +  AL L D+M KKG +P+ VTYN                           
Sbjct: 525 INGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDES 584

Query: 327 --------------SFIRYYSVV------------NEIDKAIEMMRKMQNLNHGVPTSSS 360
                         S I + SVV            NE D+  E M K     +  P  + 
Sbjct: 585 IPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIK----RNQKPNEAV 640

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
           Y  IIH  C  G V +A     E+VD G +P   T   +  AL +      +D+ L   I
Sbjct: 641 YNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEG----MDEQLNLVI 696

Query: 421 RD 422
           RD
Sbjct: 697 RD 698



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 13/205 (6%)

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
           F C      +++V+ +   +    KA  +++  +L GF   P V +Y  ++ S  +    
Sbjct: 126 FMCNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFM--PGVLSYNAILDSIVR---- 179

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
             CRK +   I+ A  ++R M+  G   +V +YN LI G C    +E  L  F++M +  
Sbjct: 180 --CRKPV---IF-AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNR 233

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
           C+PN VTYN+ I  Y  +  ID+A +++R M  L    P   +Y  +I+ LC  GR+ E 
Sbjct: 234 CLPNVVTYNTVIGAYCKLKRIDEAFKLLRSM-GLEGLEPNLLTYNMVINGLCRVGRIEET 292

Query: 378 RDFLAELVDGGSVPREYTYKLVCDA 402
              LAE+   G  P   TY  + + 
Sbjct: 293 SGVLAEMDRKGFAPDGVTYNTLVNG 317



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           SV  LIK    +GL+NEA   F  M +   +P+   YNV+I+  CR GN +KA  L ++M
Sbjct: 605 SVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEM 664

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              GF   P   T   L+ +    GM             + N + R +L    + D    
Sbjct: 665 VDFGF--IPHTVTIIALVKALYSEGMDE-----------QLNLVIRDILRSCKLSDAELS 711

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             L+    K   I+    L  +M K G +P+
Sbjct: 712 KALVQINHKEGNIDAVFNLLTEMAKDGFLPS 742


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 125/239 (52%), Gaps = 16/239 (6%)

Query: 170 SSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           S+++C  ++  L +EG +    + +  M + R   +V  ++VVIN LC+VG F KA  ++
Sbjct: 193 SALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVV 252

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           E M+  GF   P V TY  +I  YCK G           ++++A+ L + M+ K   P+ 
Sbjct: 253 EDMKAWGF--SPSVITYNTIIDGYCKAG-----------KMFKADALLKEMVAKRIHPNE 299

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           + +N LIDG C+   +  A ++F++M ++G  PN VTYNS I       ++D+A+ +  K
Sbjct: 300 ITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDK 359

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           M  +    P   +Y  +I+  C+   + EAR+ L ++   G  P   T+  + DA   A
Sbjct: 360 MSGMGLK-PNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKA 417



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 121/252 (48%), Gaps = 18/252 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D ++DM   G    V T +   +I    + G + +A A    M   R  P+   +N++I+
Sbjct: 250 DVVEDMKAWGFSPSVITYNT--IIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILID 307

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             CR  N   A+ + E+M+  G +  P+V TY  LI+  C  G           ++ EA 
Sbjct: 308 GFCRDENVTAAKKVFEEMQRQGLQ--PNVVTYNSLINGLCSNG-----------KLDEAL 354

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L   M   G  P+VV YN LI+G CK   ++ A E+ DD+ K+G  PN +T+N+ I  Y
Sbjct: 355 GLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAY 414

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                +D A  ++R M  L+ GV P  S+Y  +I   C  G V EAR    E+   G   
Sbjct: 415 GKAGRMDDAF-LLRSMM-LDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKA 472

Query: 392 REYTYKLVCDAL 403
              TY ++ DAL
Sbjct: 473 DLVTYNILVDAL 484



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 130/276 (47%), Gaps = 19/276 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEAL 189
           NE+T   +   F R  NV       ++M R+G    +VT +S   LI  L   G ++EAL
Sbjct: 298 NEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNS---LINGLCSNGKLDEAL 354

Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
               +M     +P+V  YN +IN  C+     +AR +L+ +   G    P+V T+  LI 
Sbjct: 355 GLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGL--APNVITFNTLID 412

Query: 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
           +Y K G           R+ +A  L  +ML  G  P+V  YNCLI G C+   ++ A +L
Sbjct: 413 AYGKAG-----------RMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKL 461

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS--SYTPIIHA 367
             +M   G   + VTYN  +       E  KA+ ++ +M  +      ++  +Y  +I  
Sbjct: 462 AKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKG 521

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            C  G++ EA   L E+++ G +P   TY ++ D +
Sbjct: 522 FCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEM 557



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           S+  CLI     EG V EA      M+    + D+  YN++++ALC+ G   KA  LL++
Sbjct: 440 STYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDE 499

Query: 230 MEL---PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA--------NHLFRLM 278
           M L    G R   ++ TY +LI  +C  G      + +   + +         + L   M
Sbjct: 500 MTLMEKKGRRA--NIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEM 557

Query: 279 LFKGFVPDVVAY 290
           + KGF+PD+  +
Sbjct: 558 MEKGFIPDIDGH 569



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/251 (19%), Positives = 97/251 (38%), Gaps = 42/251 (16%)

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME----------------LPGFR 236
           +  K+F    +V  +  +++ L    N+NK R LL+                   L  + 
Sbjct: 96  WTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWG 155

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRR------------------------RIWEAN 272
           C   +    +L+ +Y K G      +   R                        RI    
Sbjct: 156 CANSIIV-DMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVE 214

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +++ M+ +    +VV ++ +I+G CK  + ++A ++ +DM   G  P+ +TYN+ I  Y
Sbjct: 215 SVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGY 274

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               ++ KA  ++++M       P   ++  +I   C    V  A+    E+   G  P 
Sbjct: 275 CKAGKMFKADALLKEMV-AKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPN 333

Query: 393 EYTYKLVCDAL 403
             TY  + + L
Sbjct: 334 VVTYNSLINGL 344


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 138/305 (45%), Gaps = 31/305 (10%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           RG   +     L+D+  RG    +   +   ++  + ++G V++AL     +  F C PD
Sbjct: 169 RGGGFRSAVRVLEDLHARGCA--LDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPD 226

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------- 256
           V +YN V+  LC    +   + L+E+M      CPP++ T+  LIS  C+ G+       
Sbjct: 227 VVSYNAVLKGLCMAKRWGCVQELMEEMVR--MACPPNIVTFNTLISYLCRNGLFERVHEV 284

Query: 257 -----QTGCRKAIRR------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
                + GC   IR              +  A+ +   M   G  P+VV YN L+ G C 
Sbjct: 285 LAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCS 344

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTS 358
             R E   EL  +M  K C  + VT+N  + ++     +D+ IE++ +M  L HG +P  
Sbjct: 345 AERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM--LVHGCMPDV 402

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRK 418
            +YT +I+  C+ G + EA   L  +   G  P   +Y +V   L +AE     +D + +
Sbjct: 403 ITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQ 462

Query: 419 RIRDG 423
            I+ G
Sbjct: 463 MIQQG 467



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 124/258 (48%), Gaps = 16/258 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V  + + L+ M   G    V T   T +I    +EGL++EA+     M    C+
Sbjct: 377 FCQNGLVDRVIELLEQMLVHGCMPDVIT--YTTVINGFCKEGLIDEAVMLLKSMTACGCK 434

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+  +Y +V+  LC    +  A  L+ QM   G  CP +  T+  LI+  CK G+     
Sbjct: 435 PNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG--CPLNPITFNTLINFLCKKGL----- 487

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + +A  L + ML  G  PD+++Y+ +IDG  K  + + ALEL + M  KG  PN
Sbjct: 488 ------VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 541

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            + Y+S     S    I+K I+M   +Q+       +  Y  +I +LC+ G    A +FL
Sbjct: 542 TIIYSSIASALSREGRINKVIQMFDNIQDTTIR-SDAVLYNAVISSLCKRGETERAIEFL 600

Query: 382 AELVDGGSVPREYTYKLV 399
           A +V  G VP E TY ++
Sbjct: 601 AYMVSSGCVPNESTYTIL 618



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 14/205 (6%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C  D   +N++++  C+ G  ++   LLEQM + G  C PDV TYT +I+ +CK G+   
Sbjct: 363 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHG--CMPDVITYTTVINGFCKEGL--- 417

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   I EA  L + M   G  P+ ++Y  ++ G C   R   A +L   M ++GC 
Sbjct: 418 --------IDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCP 469

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
            N +T+N+ I +      +++AIE++++M  +N   P   SY+ +I  L +AG+  EA +
Sbjct: 470 LNPITFNTLINFLCKKGLVEQAIELLKQML-VNGCSPDLISYSTVIDGLGKAGKTDEALE 528

Query: 380 FLAELVDGGSVPREYTYKLVCDALN 404
            L  +V+ G  P    Y  +  AL+
Sbjct: 529 LLNVMVNKGMSPNTIIYSSIASALS 553



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 106/234 (45%), Gaps = 16/234 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++ L   G + +ALA    M +  C P    Y+V++ A CR G F  A  +LE +   G
Sbjct: 128 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 187

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  DV    +++++ C  G            + +A HL R +   G  PDVV+YN ++
Sbjct: 188 --CALDVGNCNLVLNAICDQG-----------SVDKALHLLRDLPSFGCEPDVVSYNAVL 234

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   R     EL ++M +  C PN VT+N+ I Y       ++  E++ +M    HG
Sbjct: 235 KGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMA--EHG 292

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
             P    Y  II  +C+ G +  A + L  +   G  P    Y  +   L +AE
Sbjct: 293 CTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAE 346



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 13/174 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L ++GLV +A+    +M    C PD+ +Y+ VI+ L + G  ++A  LL  M   G
Sbjct: 478 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKG 537

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+   Y+ + S+  + G           RI +   +F  +       D V YN +I
Sbjct: 538 MS--PNTIIYSSIASALSREG-----------RINKVIQMFDNIQDTTIRSDAVLYNAVI 584

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
              CK    ERA+E    M   GC+PN  TY   IR  +    + +A EM+ ++
Sbjct: 585 SSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTEL 638



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 72/173 (41%), Gaps = 17/173 (9%)

Query: 148 VKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           V+   + LK M   G + +L++ S+V   I  LG+ G  +EAL     M      P+   
Sbjct: 488 VEQAIELLKQMLVNGCSPDLISYSTV---IDGLGKAGKTDEALELLNVMVNKGMSPNTII 544

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           Y+ + +AL R G  NK   + + ++    R   D   Y  +ISS CK G           
Sbjct: 545 YSSIASALSREGRINKVIQMFDNIQDTTIR--SDAVLYNAVISSLCKRG----------- 591

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
               A      M+  G VP+   Y  LI G      ++ A E+  ++  KG +
Sbjct: 592 ETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 644



 Score = 42.0 bits (97), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 15/178 (8%)

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           Y  +++ YC+ G     R              RL       P+   Y  ++   C   RI
Sbjct: 93  YNAMVAGYCRAGQLESAR--------------RLAAAVPVPPNAYTYFPVVRALCARGRI 138

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
             AL + D+M ++GC P    Y+  +           A+ ++  +      +   +    
Sbjct: 139 ADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNL- 197

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
           +++A+C+ G V +A   L +L   G  P   +Y  V   L  A+    + + + + +R
Sbjct: 198 VLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 255


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 126/268 (47%), Gaps = 20/268 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + +  I  L + G V EAL  F  +K+    PDV+ Y+ +I+  C+ G   KA
Sbjct: 519 GVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKA 578

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L ++M L G    P+++ Y  L+   CK G            I  A  LF  M  KG 
Sbjct: 579 FELHDEMCLKGI--APNIFIYNALVDGLCKSG-----------DIQRARKLFDGMPEKGL 625

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PD V Y+ +IDG CK+  +  A  LF +M  KG  P+   YN+ +       +++KA+ 
Sbjct: 626 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 685

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD-- 401
           + R+M  L  G  T+ S+  +I   C++ ++ EA     E++    +P   TY  V D  
Sbjct: 686 LFREM--LQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWH 743

Query: 402 -ALNAAEEPSLLDDGLRKR--IRDGIEY 426
                 EE +LL   +++R  I D + Y
Sbjct: 744 CKAGKMEEANLLFKEMQERNLIVDTVTY 771



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 119/252 (47%), Gaps = 19/252 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    + G + EAL+ F  +      PDV   +  I+ L + G   +A  +  +++ 
Sbjct: 493 TVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE 552

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PDV+TY+ LIS +CK G            + +A  L   M  KG  P++  YN 
Sbjct: 553 KGL--VPDVFTYSSLISGFCKQG-----------EVEKAFELHDEMCLKGIAPNIFIYNA 599

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG CK+  I+RA +LFD M +KG  P+ VTY++ I  Y     + +A  +  +M   +
Sbjct: 600 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP--S 657

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV---CDALNAAEE 408
            GV P S  Y  ++H  C+ G + +A +   E++  G         L+   C +    E 
Sbjct: 658 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEA 717

Query: 409 PSLLDDGLRKRI 420
             L  + + K+I
Sbjct: 718 SQLFQEMIAKQI 729



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 21/235 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EA + F+ M     +P  + YN +++  C+ G+  KA  L  +M   GF       ++
Sbjct: 645 VAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF---ATTLSF 701

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI  YCK      C+      I EA+ LF+ M+ K  +PD V Y  +ID  CK  ++E
Sbjct: 702 NTLIDGYCK-----SCK------IQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKME 750

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A  LF +M ++  I + VTY S +  Y+ + +  +   +  KM  +  GV P   +Y  
Sbjct: 751 EANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKM--VAKGVKPDEVTYGL 808

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDD 414
           +I+A C+   ++EA     E+V  G + +   + L+  AL    +  E   LLD+
Sbjct: 809 VIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDE 863



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 159/377 (42%), Gaps = 41/377 (10%)

Query: 53  KSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGL 112
           K +  FF+ S   +G        + L  ++   E + +AN VL       R P   +  L
Sbjct: 85  KRLLDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANGVLT---QMIRTPYSSSSIL 141

Query: 113 NKATEFYHWVERF-------FDFFHNEMTCKEMGI------VFARGNNVKGLWDFLKDMS 159
           +       W   +       FD   +  + K MG+      VF    N   L   ++  S
Sbjct: 142 DSV---LFWFRNYGGSSPVVFDILID--SYKRMGMLDEAANVFFVAKNDSILISLIRCNS 196

Query: 160 RRGNGE---LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
            R  GE   +  T + T +   L     +NEA  TF  M++   +PD  A + +I+   R
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR 256

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
            G+ ++   + + M   G   P ++ TY +LI   CK+G           ++ +A  + +
Sbjct: 257 EGDIDEVLRIKDVMVSCGI--PINLITYNVLIHGLCKFG-----------KMEKAAEILK 303

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M+  G  P+   +  LI+G C+ + + RALEL D+M K+  +P+ V+Y + I       
Sbjct: 304 GMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCK 363

Query: 337 EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           ++  A +++ KM   +   P    Y+ +I      GR+ EAR  L  +   G  P  + Y
Sbjct: 364 DLSLANKLLEKM-TFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCY 422

Query: 397 KLVCDALNAA---EEPS 410
             +   L+ A   EE S
Sbjct: 423 NAIISCLSKAGKMEEAS 439



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 14/196 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P+V  Y+ +I      G   +AR LL+ M   G    PD++ Y  +IS   K G     
Sbjct: 381 KPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGV--APDIFCYNAIISCLSKAG----- 433

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA+     +  +G  PD V +   I G  KT ++  A + FD+M   G +P
Sbjct: 434 ------KMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 487

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N   Y   I  +     + +A+ + R +  L   +P   + +  IH L + GRV EA   
Sbjct: 488 NNPLYTVLINGHFKAGNLMEALSIFRHLHALGV-LPDVQTCSAFIHGLLKNGRVQEALKV 546

Query: 381 LAELVDGGSVPREYTY 396
            +EL + G VP  +TY
Sbjct: 547 FSELKEKGLVPDVFTY 562



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 112/258 (43%), Gaps = 29/258 (11%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           ++ + LI     EG ++E L     M       ++  YNV+I+ LC+ G   KA  +L+ 
Sbjct: 245 NACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKG 304

Query: 230 MELPGFRCPPDVYTYTILISSYCK---YGMQTGCRKAIRRR------------------- 267
           M   G  C P+  T+ +LI  YC+    G        + +R                   
Sbjct: 305 MITLG--CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHC 362

Query: 268 --IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             +  AN L   M F G  P+VV Y+ LI G     RIE A  L D M+  G  P+   Y
Sbjct: 363 KDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCY 422

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           N+ I   S   ++++A   + ++Q    G+ P + ++   I    + G++ EA  +  E+
Sbjct: 423 NAIISCLSKAGKMEEASTYLLEIQ--GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM 480

Query: 385 VDGGSVPREYTYKLVCDA 402
           +D G +P    Y ++ + 
Sbjct: 481 LDHGLMPNNPLYTVLING 498



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 17/243 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           +  ++M ++G     TT S   LI    +   + EA   F  M   +  PD   Y  VI+
Sbjct: 685 NLFREMLQKG---FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVID 741

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             C+ G   +A  L ++M+        D  TYT L+  Y K G  +           E  
Sbjct: 742 WHCKAGKMEEANLLFKEMQERNLIV--DTVTYTSLMYGYNKLGQSS-----------EVF 788

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            LF  M+ KG  PD V Y  +I   CK   +  A +L D++  KG +     ++  I   
Sbjct: 789 ALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITAL 848

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               ++ +A +++ +M  L    P+ ++ + ++ +  EAG++ EA      +   G VP 
Sbjct: 849 CKREDLTEASKLLDEMGELGLK-PSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 907

Query: 393 EYT 395
             T
Sbjct: 908 TTT 910



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 17/189 (8%)

Query: 244 YTILISSYCKYGMQ--------TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           + ILI SY + GM              +I   +   N L R M  KG VP+   Y  +  
Sbjct: 159 FDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSL-RSMGEKGLVPNTYTYTIITA 217

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G C+  R+  A   F++M K G  P+    ++ I  +    +ID+ + +   M  ++ G+
Sbjct: 218 GLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVM--VSCGI 275

Query: 356 PTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPS 410
           P +  +Y  +IH LC+ G++ +A + L  ++  G  P   T+ L+    C   N      
Sbjct: 276 PINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALE 335

Query: 411 LLDDGLRKR 419
           LLD+ + KR
Sbjct: 336 LLDE-MEKR 343


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 125/239 (52%), Gaps = 16/239 (6%)

Query: 170 SSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           S+++C  ++  L +EG +    + +  M + R   +V  ++VVIN LC+VG F KA  ++
Sbjct: 193 SALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVV 252

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           E M+  GF   P V TY  +I  YCK G           ++++A+ L + M+ K   P+ 
Sbjct: 253 EDMKAWGF--SPSVITYNTIIDGYCKAG-----------KMFKADALLKEMVAKRIHPNE 299

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           + +N LIDG C+   +  A ++F++M ++G  PN VTYNS I       ++D+A+ +  K
Sbjct: 300 ITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDK 359

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           M  +    P   +Y  +I+  C+   + EAR+ L ++   G  P   T+  + DA   A
Sbjct: 360 MSGMGLK-PNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKA 417



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 121/252 (48%), Gaps = 18/252 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D ++DM   G    V T +   +I    + G + +A A    M   R  P+   +N++I+
Sbjct: 250 DVVEDMKAWGFSPSVITYNT--IIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILID 307

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             CR  N   A+ + E+M+  G +  P+V TY  LI+  C  G           ++ EA 
Sbjct: 308 GFCRDENVTAAKKVFEEMQRQGLQ--PNVVTYNSLINGLCSNG-----------KLDEAL 354

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L   M   G  P+VV YN LI+G CK   ++ A E+ DD+ K+G  PN +T+N+ I  Y
Sbjct: 355 GLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAY 414

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                +D A  ++R M  L+ GV P  S+Y  +I   C  G V EAR    E+   G   
Sbjct: 415 GKAGRMDDAF-LLRSMM-LDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKA 472

Query: 392 REYTYKLVCDAL 403
              TY ++ DAL
Sbjct: 473 DLVTYNILVDAL 484



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 131/301 (43%), Gaps = 37/301 (12%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEAL 189
           NE+T   +   F R  NV       ++M R+G    +VT +S   LI  L   G ++EAL
Sbjct: 298 NEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNS---LINGLCSNGKLDEAL 354

Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
               +M     +P+V  YN +IN  C+     +AR +L+ +   G    P+V T+  LI 
Sbjct: 355 GLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGL--APNVITFNTLID 412

Query: 250 SYCKYG------------MQTG---------------CRKAIRRRIWEANHLFRLMLFKG 282
           +Y K G            + TG               CR+     + EA  L + M   G
Sbjct: 413 AYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREG---NVKEARKLAKEMEGNG 469

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
              D+V YN L+D  CK     +A+ L D+M + G  P+ +TYN+ I  Y        A+
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAAL 529

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +   M+          +Y  +I   C  G++ EA   L E+++ G +P   TY ++ D 
Sbjct: 530 NVRTLMEKKGRRANI-VTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDE 588

Query: 403 L 403
           +
Sbjct: 589 M 589



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/251 (19%), Positives = 97/251 (38%), Gaps = 42/251 (16%)

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME----------------LPGFR 236
           +  K+F    +V  +  +++ L    N+NK R LL+                   L  + 
Sbjct: 96  WTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWG 155

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRR------------------------RIWEAN 272
           C   +    +L+ +Y K G      +   R                        RI    
Sbjct: 156 CANSIIV-DMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVE 214

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +++ M+ +    +VV ++ +I+G CK  + ++A ++ +DM   G  P+ +TYN+ I  Y
Sbjct: 215 SVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGY 274

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               ++ KA  ++++M       P   ++  +I   C    V  A+    E+   G  P 
Sbjct: 275 CKAGKMFKADALLKEMV-AKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPN 333

Query: 393 EYTYKLVCDAL 403
             TY  + + L
Sbjct: 334 VVTYNSLINGL 344



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 12/159 (7%)

Query: 140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           + F R  NVK      K+M   GNG      +   L+  L ++G   +A+     M +  
Sbjct: 447 VGFCREGNVKEARKLAKEM--EGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVG 504

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             P    YN +I+   R GN   A  +   ME  G R   ++ TY +LI  +C  G    
Sbjct: 505 LNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRA--NIVTYNVLIKGFCNKGKLEE 562

Query: 260 CRKAIRRRIWEA--------NHLFRLMLFKGFVPDVVAY 290
             + +   + +         + L   M+ KGF+PD+  +
Sbjct: 563 ANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDIDGH 601


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 147/337 (43%), Gaps = 32/337 (9%)

Query: 105 PQKVTLG--------LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKG-LWDFL 155
           P  VT G          K TE   + +   D  H  M    +  V   G+   G L + L
Sbjct: 541 PDAVTFGAFILGYSKTGKMTEAAKYFDEMLD--HGLMPNNPLYTVLINGHFKAGNLMEAL 598

Query: 156 KDMSR-RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
               R    G L    + +  I  L + G V EAL  F  +K+    PDV+ Y+ +I+  
Sbjct: 599 SIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 658

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           C+ G   KA  L ++M L G    P+++ Y  L+   CK G            I  A  L
Sbjct: 659 CKQGEVEKAFELHDEMCLKGI--APNIFIYNALVDGLCKSG-----------DIQRARKL 705

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           F  M  KG  PD V Y+ +IDG CK+  +  A  LF +M  KG  P+   YN+ +     
Sbjct: 706 FDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCK 765

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
             +++KA+ + R+M  L  G  T+ S+  +I   C++ ++ EA     E++    +P   
Sbjct: 766 EGDMEKAMNLFREM--LQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHV 823

Query: 395 TYKLVCD---ALNAAEEPSLLDDGLRKR--IRDGIEY 426
           TY  V D        EE +LL   +++R  I D + Y
Sbjct: 824 TYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTY 860



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 21/235 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EA + F+ M     +P  + YN +++  C+ G+  KA  L  +M   GF       ++
Sbjct: 734 VAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF---ATTLSF 790

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI  YCK      C+      I EA+ LF+ M+ K  +PD V Y  +ID  CK  ++E
Sbjct: 791 NTLIDGYCK-----SCK------IQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKME 839

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A  LF +M ++  I + VTY S +  Y+ + +  +   +  KM  +  GV P   +Y  
Sbjct: 840 EANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKM--VAKGVKPDEVTYGL 897

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDD 414
           +I+A C+   ++EA     E+V  G + +   + L+  AL    +  E   LLD+
Sbjct: 898 VIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDE 952



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 115/247 (46%), Gaps = 17/247 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +I+ + + G ++EA+     M +    P+ Y Y ++   LCR    N+A+   E+M+ 
Sbjct: 267 SLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQK 326

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  PD    + LI  + + G            I E   +  +M+  G   +++ YN 
Sbjct: 327 TGLK--PDYNACSALIDGFMREG-----------DIDEVLRIKDVMVSCGIPINLITYNV 373

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI G CK  ++E+A E+   M   GC PN  T+   I  Y   + + +A+E++ +M+  N
Sbjct: 374 LIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRN 433

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA---EEP 409
             VP++ SY  +I+ LC    +  A   L ++   G  P    Y ++  A  +    EE 
Sbjct: 434 L-VPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEA 492

Query: 410 SLLDDGL 416
             L DG+
Sbjct: 493 RRLLDGM 499



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 17/229 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +NEA  TF  M++   +PD  A + +I+   R G+ ++   + + M   G   P ++ TY
Sbjct: 314 MNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGI--PINLITY 371

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            +LI   CK+G           ++ +A  + + M+  G  P+   +  LI+G C+ + + 
Sbjct: 372 NVLIHGLCKFG-----------KMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMG 420

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           RALEL D+M K+  +P+ V+Y + I       ++  A +++ KM   +   P    Y+ +
Sbjct: 421 RALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKM-TFSGLKPNVVVYSIL 479

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA---EEPS 410
           I A    GR+ EAR  L  +   G  P  + Y  +   L+ A   EE S
Sbjct: 480 IMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 528



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 159/379 (41%), Gaps = 45/379 (11%)

Query: 53  KSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGL 112
           K +  FF+ S   +G        + L  ++   E + +AN VL       R P   +  L
Sbjct: 87  KRLLDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANGVLT---QMIRTPYSSSSIL 143

Query: 113 NKATEFYHWVERF-------FDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE 165
           +       W   +       FD   +  + K MG++    N              + +  
Sbjct: 144 DSV---LFWFRNYGGSSPVVFDILID--SYKRMGMLDEAANVF---------FVAKNDSI 189

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L++      L+K L + G++      +  M   +   DVY Y  ++ ALC+ G+   A+ 
Sbjct: 190 LISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKR 249

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           +L +M+  G    P+ + Y+++I   C+ G            I EA  L R M  KG VP
Sbjct: 250 VLIEMDEKGLN--PNEFIYSLVIEGMCQVG-----------DIDEAVELKRSMGEKGLVP 296

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           +   Y  +  G C+  R+  A   F++M K G  P+    ++ I  +    +ID+ + + 
Sbjct: 297 NTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIK 356

Query: 346 RKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----C 400
             M  ++ G+P +  +Y  +IH LC+ G++ +A + L  +V  G  P   T+ L+    C
Sbjct: 357 DVM--VSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYC 414

Query: 401 DALNAAEEPSLLDDGLRKR 419
              N      LLD+ + KR
Sbjct: 415 REHNMGRALELLDE-MEKR 432



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 14/196 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P+V  Y+++I A    G   +AR LL+ M   G    PD++ Y  +IS   K G     
Sbjct: 470 KPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGV--APDIFCYNAIISCLSKAG----- 522

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA+     +  +G  PD V +   I G  KT ++  A + FD+M   G +P
Sbjct: 523 ------KMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 576

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N   Y   I  +     + +A+ + R++  L   +P   + +  IH L + GRV EA   
Sbjct: 577 NNPLYTVLINGHFKAGNLMEALSIFRRLHALGV-LPDVQTCSAFIHGLLKNGRVQEALKV 635

Query: 381 LAELVDGGSVPREYTY 396
            +EL + G VP  +TY
Sbjct: 636 FSELKEKGLVPDVFTY 651



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 111/258 (43%), Gaps = 29/258 (11%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           ++ + LI     EG ++E L     M       ++  YNV+I+ LC+ G   KA  +L+ 
Sbjct: 334 NACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKG 393

Query: 230 MELPGFRCPPDVYTYTILISSYCK---YGMQTGCRKAIRRR------------------- 267
           M   G  C P+  T+ +LI  YC+    G        + +R                   
Sbjct: 394 MVTLG--CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHC 451

Query: 268 --IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             +  AN L   M F G  P+VV Y+ LI       RIE A  L D M+  G  P+   Y
Sbjct: 452 KDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCY 511

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           N+ I   S   ++++A   + ++Q    G+ P + ++   I    + G++ EA  +  E+
Sbjct: 512 NAIISCLSKAGKMEEASTYLLEIQ--GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM 569

Query: 385 VDGGSVPREYTYKLVCDA 402
           +D G +P    Y ++ + 
Sbjct: 570 LDHGLMPNNPLYTVLING 587



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 17/243 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           +  ++M ++G     TT S   LI    +   + EA   F  M   +  PD   Y  VI+
Sbjct: 774 NLFREMLQKG---FATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVID 830

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             C+ G   +A  L ++M+        D  TYT L+  Y K G  +           E  
Sbjct: 831 WHCKAGKMEEANLLFKEMQERNLIV--DTVTYTSLMYGYNKLGQSS-----------EVF 877

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            LF  M+ KG  PD V Y  +I   CK   +  A +L D++  KG +     ++  I   
Sbjct: 878 ALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITAL 937

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               ++ +A +++ +M  L    P+ ++   ++ +  EAG++ EA      +   G VP 
Sbjct: 938 CKREDLTEASKLLDEMGELGLK-PSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 996

Query: 393 EYT 395
             T
Sbjct: 997 TTT 999


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 126/275 (45%), Gaps = 19/275 (6%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           L+ M  +GN   + T +V  +I  L + G V EA   F  M    CRPD + Y  +I  L
Sbjct: 100 LEQMVEKGNSPTLKTYTV--VIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGL 157

Query: 215 CRVGNFNKARFLLEQMELPGFRCP--PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           C+ G   +A  L ++           PDV TYT LI   CK G           RI EA 
Sbjct: 158 CKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAG-----------RILEAR 206

Query: 273 HLF-RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
            +F    + +GF+PD V Y  +IDG CK  R+E   E F +M  +G  P+ VTY + I  
Sbjct: 207 QVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDG 266

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
           +     I KA  + R+M  L  G   S+ +Y  I+  LC+AGRV EA      + + G V
Sbjct: 267 FMKAKMIPKAHRVYRQM--LQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCV 324

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
               TY  + D   +    S   +  R+ +  G E
Sbjct: 325 ATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCE 359



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + T  + + L+     EG V+ A+  F RM    C P++ +YN++I  LCR G   KA
Sbjct: 322 GCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKA 381

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
            F  E+  L   R  PDVYT+   +   C+  + T         + +   LF  M+ +G 
Sbjct: 382 YFYFEK--LLQRRLCPDVYTFNAFLHGLCQR-LDT---------VSDGVELFESMVSQGT 429

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P++ +Y+ L+DG C+   +E ALE+F +M  +G  P+ V +N+ IR+  +   +D+A+E
Sbjct: 430 SPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALE 489

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
           + R+++      P + SY  ++  L    R+ EAR     +   G  PR Y
Sbjct: 490 VFRELE--RRSAPDAWSYWSLLDGLSRCERMEEARLLSFHMKLQGCAPRHY 538



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 113/237 (47%), Gaps = 17/237 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T +I  L  E  ++EA +   R  +  C PD   YNV I+ LC+    + A  LL++M
Sbjct: 9   AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKM 68

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +    +C P   TYT L+    K G           R+ EA  +   M+ KG  P +  Y
Sbjct: 69  DEK--KCLPTTVTYTALVDGLLKAG-----------RLDEAMAVLEQMVEKGNSPTLKTY 115

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             +IDG  K  R+E A  +F DM   GC P+   Y + I+      + ++A  + ++   
Sbjct: 116 TVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANA 175

Query: 351 LNH---GVPTSSSYTPIIHALCEAGRVLEARD-FLAELVDGGSVPREYTYKLVCDAL 403
             H    VP   +YT +I  LC+AGR+LEAR  F  E V+ G +P   TY  + D L
Sbjct: 176 RKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGL 232



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 121/265 (45%), Gaps = 34/265 (12%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATF----YRMKQFRCRPDVYAYNVVINALCRV 217
           GNG        T LIK L + G   EA A +     R       PDV  Y  +I+ LC+ 
Sbjct: 140 GNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKA 199

Query: 218 GNFNKARFLLEQMELP-GFRCPPDVYTYTILISSYCKYG-MQTGCRK--AIRRRIWE--- 270
           G   +AR + +   +  GF   PD  TYT +I   CK G ++ GC +   +R R +E   
Sbjct: 200 GRILEARQVFDDEAVERGF--IPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDA 257

Query: 271 ------------------ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
                             A+ ++R ML  G V   V YN ++DG CK  R+  A   F  
Sbjct: 258 VTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLA 317

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEA 371
           M ++GC+   VTY++ +  +     +  A+E+ R+M  L+ G  P   SY  II  LC A
Sbjct: 318 MEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRM--LDRGCEPNLVSYNIIIRGLCRA 375

Query: 372 GRVLEARDFLAELVDGGSVPREYTY 396
           G++ +A  +  +L+     P  YT+
Sbjct: 376 GKLAKAYFYFEKLLQRRLCPDVYTF 400



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           C PD+  +T++I+  C+            +R+ EA  +    +  G  PD V YN  IDG
Sbjct: 3   CSPDMVAFTVVINGLCR-----------EKRLDEAFSVLERAVRAGCEPDYVTYNVFIDG 51

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            CK  R++ A +L   M++K C+P  VTY + +        +D+A+ ++ +M    +  P
Sbjct: 52  LCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNS-P 110

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
           T  +YT +I  L +AGRV EAR    +++  G  P  + Y  +   L  + +P
Sbjct: 111 TLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKP 163


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 121/267 (45%), Gaps = 29/267 (10%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+G      +   LIK     G++++A+  F  M+    +PDV  Y  VI ALCR+G  +
Sbjct: 387 GDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 446

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------------- 266
            A     QM   G    PD Y Y  LI  +C +G     ++ I                 
Sbjct: 447 DAMEKFNQMIDQGV--APDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS 504

Query: 267 ---------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    R+ +A ++F L +  G  P  V Y+ L+DG C   ++E+AL +FD M   G
Sbjct: 505 IINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 564

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLE 376
             PN V Y + +  Y  +  ID+ + + R+M  L  G+ P++  Y  II  L EAGR + 
Sbjct: 565 IEPNDVVYGTLVNGYCKIGRIDEGLSLFREM--LQKGIKPSTILYNIIIDGLFEAGRTVP 622

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A+    E+ + G    + TY +V   L
Sbjct: 623 AKVKFHEMTESGIAMNKCTYNIVLRGL 649



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 130/266 (48%), Gaps = 22/266 (8%)

Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+K   E    +EAL    +R  +  C PDV++Y++++ +LC  G   +A  LL  M   
Sbjct: 152 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C PDV  Y+ +I  + K G            + +A  LF+ M+ +G  PD V Y+ +
Sbjct: 212 GAVCSPDVVAYSTVIDGFFKEG-----------DVNKACDLFKEMVQRGIPPDFVTYSSV 260

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +   CK   +++A      M  KG +PN  TYN+ I  YS   +  +A+ + ++M+   H
Sbjct: 261 VHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMR--RH 318

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
            + P   + + ++ +LC+ G++ EARD    +   G  P  ++Y ++ +    A +  L+
Sbjct: 319 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGY--ATKGCLV 376

Query: 413 D--DGLRKRIRDGIE---YRFRQVMK 433
           D  D     + DGI    Y F  ++K
Sbjct: 377 DMTDLFDLMLGDGIAPDIYTFNVLIK 402



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 118/236 (50%), Gaps = 18/236 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL+ M  +G   L    +   LI      G   EA+  F  M++    PDV   ++++ +
Sbjct: 276 FLRQMVNKG--VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGS 333

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+ G   +AR + + M + G    P+V++YTI+++ Y       GC       + +   
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQN--PNVFSYTIMLNGYA----TKGC-------LVDMTD 380

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF LML  G  PD+  +N LI        +++A+ +F++M   G  P+ VTY + I    
Sbjct: 381 LFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALC 440

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            + ++D A+E   +M  ++ GV P   +Y  +I   C  G +L+A++ ++E+++ G
Sbjct: 441 RIGKMDDAMEKFNQM--IDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG 494



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 128/292 (43%), Gaps = 29/292 (9%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG  +     + +I  L + G V +A   F         P    Y+++++  C VG   K
Sbjct: 493 NGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEK 552

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  + + M   G   P DV  Y  L++ YCK G           RI E   LFR ML KG
Sbjct: 553 ALRVFDAMVSAGIE-PNDV-VYGTLVNGYCKIG-----------RIDEGLSLFREMLQKG 599

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P  + YN +IDG  +  R   A   F +M + G   N+ TYN  +R        D+AI
Sbjct: 600 IKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAI 659

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            + ++++ +N  +   +  T +I  + +  RV EA+D  A +   G VP   TY ++   
Sbjct: 660 FLFKELRAMNVKINIITLNT-MIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMI-- 716

Query: 403 LNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKP---IMKH--KELLKCGEI 449
                  +L+ +GL +   D   +   Q    +P   ++ H  +ELLK  EI
Sbjct: 717 ------TNLIKEGLVEEAED--MFSSMQNAGCEPDSRLLNHVVRELLKKNEI 760



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 76/178 (42%), Gaps = 13/178 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L E G    A   F+ M +     +   YN+V+  L +   F++A FL +  EL  
Sbjct: 610 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFK--ELRA 667

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                ++ T   +I+       QT       RR+ EA  LF  +   G VP VV Y+ +I
Sbjct: 668 MNVKINIITLNTMIAGM----FQT-------RRVEEAKDLFASISRSGLVPCVVTYSIMI 716

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
               K   +E A ++F  M   GC P+    N  +R     NEI +A   + K+   N
Sbjct: 717 TNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERN 774



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 13/188 (6%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P  +TY IL+           C +A R  +  A   F  +L  G   +++  N L+ G C
Sbjct: 109 PTSHTYAILMDC---------CTRAHRPELALA--FFGQLLRTGLRVNIIIANHLLKGFC 157

Query: 299 KTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-P 356
           +  R + AL+ L     + GC+P+  +Y+  ++      +  +A +++R M        P
Sbjct: 158 EAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSP 217

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              +Y+ +I    + G V +A D   E+V  G  P   TY  V  AL  A      +  L
Sbjct: 218 DVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFL 277

Query: 417 RKRIRDGI 424
           R+ +  G+
Sbjct: 278 RQMVNKGV 285


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 141/298 (47%), Gaps = 26/298 (8%)

Query: 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFA-------RGNNVKGLWDFLKDMSRRGN 163
           G +KA E     +R+F+   +      +GI  A        GN  +    F   +SRR  
Sbjct: 530 GYSKAGEM-EIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRR-- 586

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
             L    + + LI  L   G ++EA   F  +++    P+ + YN +I+  C+ GN +KA
Sbjct: 587 -VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKA 645

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LLE+M + G    PD+ TY ILI   CK G            I  A +LF  +  +G 
Sbjct: 646 SQLLEEMCIKGIN--PDIVTYNILIDGLCKAG-----------EIERAKNLFDDIEGRGL 692

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+ V Y  ++DG CK+     A +L ++M  +G  P+   YN  + +     + +KA++
Sbjct: 693 TPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALD 752

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           + ++M  L  G  ++ S+  +I   C++G++ EA   L E+++   +P   TY  + D
Sbjct: 753 LFQEM--LEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLID 808



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 130/298 (43%), Gaps = 39/298 (13%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R  N++G    L++M    NG        T L+    +EG V E+     RM++    
Sbjct: 426 LCRCGNLQGTNAILREMVM--NGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGIL 483

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------ 255
           PDV+ YN +I   C+     +AR  L  ME+   R  P+ +TY   I  Y K G      
Sbjct: 484 PDVFCYNSLIIGFCKAKRMEEARTYL--MEMLERRLRPNAHTYGAFIDGYSKAGEMEIAD 541

Query: 256 ---------------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                                ++  C++     + EA  +FR +L +  + DV  Y+ LI
Sbjct: 542 RYFNEMLSCGVLPNVGIYTALIEGHCKEG---NVTEAFSVFRFILSRRVLQDVQTYSVLI 598

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLN 352
            G  +  ++  A  +F ++ +KG +PN  TYNS I        +DKA +++ +M  + +N
Sbjct: 599 HGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGIN 658

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
              P   +Y  +I  LC+AG +  A++   ++   G  P   TY  + D    ++ P+
Sbjct: 659 ---PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPT 713



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 93/191 (48%), Gaps = 16/191 (8%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A      MK+ +  P V  Y+V+IN LCR GN      +L +M + G +  P+   YT L
Sbjct: 400 AFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLK--PNAVVYTTL 457

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           ++++ K G           R+ E+  +   M  +G +PDV  YN LI G CK  R+E A 
Sbjct: 458 MTAHAKEG-----------RVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEAR 506

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
               +M ++   PN  TY +FI  YS   E++ A     +M  L+ GV P    YT +I 
Sbjct: 507 TYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEM--LSCGVLPNVGIYTALIE 564

Query: 367 ALCEAGRVLEA 377
             C+ G V EA
Sbjct: 565 GHCKEGNVTEA 575



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 29/229 (12%)

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNF-----------NKARFLLEQMELPGFRCP- 238
            F  M   +  PDVY Y  +I+A C+VGN             KAR L E +EL       
Sbjct: 211 VFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDK 270

Query: 239 ---PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
              PD+YTY ILI+ +C           + +R  EA  +   M+  G  P+ + YN LID
Sbjct: 271 GLVPDLYTYDILINGFC-----------MEKRSREAKLMLLEMIDVGLKPEPITYNALID 319

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G  +   IE+A  + D+M   G   N + +N+ +       +++KA+E+M++M  +  GV
Sbjct: 320 GFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM--MEKGV 377

Query: 356 -PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P S +Y+ +I   C    +  A + L E+      P   TY ++ + L
Sbjct: 378 EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGL 426



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 18/249 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME-LPGFRCPPDV 241
           G + EA+  F   K F  RP + + N ++  L +    NK     +  + +   +  PDV
Sbjct: 168 GFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLK---GNKVELFWKVFDGMCAHKVLPDV 224

Query: 242 YTYTILISSYCKYGMQTGCRKAI------RRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           YTYT +IS++CK G     ++ +       R + EA  L R M+ KG VPD+  Y+ LI+
Sbjct: 225 YTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILIN 284

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G C   R   A  +  +M   G  P  +TYN+ I  +    +I++A  +  +M  +  G+
Sbjct: 285 GFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEM--VACGI 342

Query: 356 PTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPS 410
             +   +  +++ +C+AG++ +A + + E+++ G  P   TY L+    C   N A    
Sbjct: 343 EANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFE 402

Query: 411 LLDDGLRKR 419
           LLD+ ++KR
Sbjct: 403 LLDE-MKKR 410



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 21/213 (9%)

Query: 190 ATFYRMKQFRCR---PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           A F  +++   R   PD + YNV++N  C+   F KA  L ++M   GF       ++  
Sbjct: 714 AAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF---ASTVSFNT 770

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI  YCK G           ++ EANHL   M+ K F+P+ V Y  LID  CK   +  A
Sbjct: 771 LIEGYCKSG-----------KLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEA 819

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
             L+ +M ++  +P   TY S +  Y  +  + +   +  +M  +  G+ P   +Y  +I
Sbjct: 820 KRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM--VAKGIEPDKMTYYVMI 877

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
            A C  G V+EA     E++  G +P +  ++L
Sbjct: 878 DAYCREGNVMEACKLKDEILVKG-MPMKSGFRL 909



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 29/292 (9%)

Query: 126 FDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDM-SRRGNGELVT-TSSVTCLIKV----- 178
           F+F  + ++C  +     +GN V+  W     M + +   ++ T T+ ++   KV     
Sbjct: 183 FEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKD 242

Query: 179 -------LGEEG-LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
                  +GE+  L++EA+     M      PD+Y Y+++IN  C      +A+ +L +M
Sbjct: 243 AKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEM 302

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +  P+  TY  LI  + + G            I +A  +   M+  G   +++ +
Sbjct: 303 IDVGLK--PEPITYNALIDGFMRQG-----------DIEQAFRIKDEMVACGIEANLIIW 349

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L++G CK  ++E+ALE+  +M +KG  P+  TY+  I  +     + +A E++ +M+ 
Sbjct: 350 NTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK 409

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
                PT  +Y+ II+ LC  G +      L E+V  G  P    Y  +  A
Sbjct: 410 -RKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 460



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 108/240 (45%), Gaps = 16/240 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI     +G + +A      M       ++  +N ++N +C+ G   KA  ++++M   G
Sbjct: 317 LIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKG 376

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD  TY++LI  +C+            + +  A  L   M  +   P V+ Y+ +I
Sbjct: 377 VE--PDSQTYSLLIEGHCR-----------GQNMARAFELLDEMKKRKLAPTVLTYSVII 423

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G C+   ++    +  +M   G  PN V Y + +  ++    ++++  ++ +M+    G
Sbjct: 424 NGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMRE--QG 481

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
           + P    Y  +I   C+A R+ EAR +L E+++    P  +TY    D  + A E  + D
Sbjct: 482 ILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIAD 541


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 142/295 (48%), Gaps = 20/295 (6%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL-VTTSS 171
           +KA +F++W      F HN+ +   M  +  R  N+    +FL  + RR NG + +    
Sbjct: 100 SKALQFFNWAPEL-GFTHNDQSYFLMLEILGRARNLNVARNFLFSIKRRSNGTVKLEDRF 158

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              LI+  G+ GL  E++  F  MK     P V  +N ++  L + G  N A+ + ++M 
Sbjct: 159 FNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEM- 217

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
           L  +   PD YT+ ILI  +CK  M           + E    F+ M      PD+V YN
Sbjct: 218 LSTYGVTPDTYTFNILIRGFCKNSM-----------VDEGFRFFKEMSRFKCDPDLVTYN 266

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGC--IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
            L+DG C+  ++  A  + + M KK     P+ VTY + +R Y + +EID+A+ +  +M 
Sbjct: 267 TLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEM- 325

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARD-FLAELVDGGSVPREYTYKLVCDA 402
            ++ G+ P   +Y  +I  LCE  ++ + +  F   L  GG +P   T   + +A
Sbjct: 326 -VSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNA 379



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 136/285 (47%), Gaps = 25/285 (8%)

Query: 157 DMSRRGNGELVTTSSVT-------CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
           +M++    E+++T  VT        LI+   +  +V+E    F  M +F+C PD+  YN 
Sbjct: 208 NMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNT 267

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +++ LCR G  N A  ++  M        PDV TYT L+  YC           ++  I 
Sbjct: 268 LVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYC-----------MKHEID 316

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD-MNKKGCIPNRVTYNSF 328
           EA  +F  M+ KG  P+ + YN LI G C+  +I++  ++F+  +   G IP+  T N+ 
Sbjct: 317 EALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTL 376

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +  +     ++ A+E+  KM  LN   P S++Y+ +I  LC+ G    A     EL +  
Sbjct: 377 MNAHCNAGNLNDALEVFEKMMVLNVR-PDSATYSVLIRNLCQRGNFERAEQLFDELSEKE 435

Query: 389 SVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMK 433
            + R+      C  L AA + S+ +   R       E  FRQ+MK
Sbjct: 436 ILLRDDG----CTPLVAAYK-SMFEFLCRNGKTAKAERVFRQLMK 475



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 18/231 (7%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G +  T ++  L+      G +N+AL  F +M     RPD   Y+V+I  LC+ GNF 
Sbjct: 363 GGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFE 422

Query: 222 KARFLLEQME-----LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
           +A  L +++      L    C P V  Y  +    C+ G           +  +A  +FR
Sbjct: 423 RAEQLFDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNG-----------KTAKAERVFR 471

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            ++ +G   D +++  LI G C+    E   EL   M ++  +P+  TY S I       
Sbjct: 472 QLMKRG-TQDPLSFKILIKGHCREGTFEAGYELLVLMLRRDFVPDLETYQSLIDGLLQKG 530

Query: 337 EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
           E   A + + KM   +H VP +S++  I+  L   G   E+  F+  +++G
Sbjct: 531 EPLVAYQTLEKMIKSSH-VPETSTFHSILARLLAKGCAHESARFIMLMLEG 580


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 109/241 (45%), Gaps = 14/241 (5%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG +    + T ++     EG ++ A+  F  MK   C P+V+ YN ++   C VG   K
Sbjct: 294 NGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYK 353

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  LL+QM   G    PDV TY +LI   C           I   I  A  L RLM   G
Sbjct: 354 AMALLDQMRECGVE--PDVVTYNLLIRGQC-----------IDGHIESAFRLLRLMEGNG 400

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
              D   YN LID  CKT +++ A  LFD +  +G  PN VT+N+ I       + D A 
Sbjct: 401 LAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVAC 460

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             + KM +     P + +Y+P I  LC+     E   F+ E++     P    Y +V D 
Sbjct: 461 TFLEKMVSAG-CAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDR 519

Query: 403 L 403
           L
Sbjct: 520 L 520



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 126/282 (44%), Gaps = 25/282 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + R   +    D    M  RG  +     S   LI+   E G V+EAL  F  ++Q    
Sbjct: 174 YCRTQQLDVAQDLFDKMPLRGFSQ--DAVSYAALIEGFCETGRVDEALELFRELEQ---- 227

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+Y +  ++  LC      +  ++L++M+  G+R  P    Y  L+  +C+        
Sbjct: 228 PDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWR--PATRAYAALVDLWCR-------- 277

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               ++  EA  +   M   G VP  V    +++  C+  R+  A+ +F+ M  KGC PN
Sbjct: 278 ---EQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPN 334

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
             TYN+ ++ +  V ++ KA+ ++ +M+    GV P   +Y  +I   C  G +  A   
Sbjct: 335 VWTYNAMVQGFCNVGKVYKAMALLDQMREC--GVEPDVVTYNLLIRGQCIDGHIESAFRL 392

Query: 381 LAELVDGGSVPREYTYKLVCDAL---NAAEEPSLLDDGLRKR 419
           L  +   G    +YTY ++ DAL      +E   L DGL  R
Sbjct: 393 LRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYR 434



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 97/201 (48%), Gaps = 18/201 (8%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P    YN +I ALCR  +   A+  L  M   G+R  PD +T+  LI  YC+        
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWR--PDAFTFNSLILGYCR-------- 176

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               +++  A  LF  M  +GF  D V+Y  LI+G C+T R++ ALELF ++ +    P+
Sbjct: 177 ---TQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ----PD 229

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             T+ + ++        ++ + M++KM+ L    P + +Y  ++   C   +  EA   L
Sbjct: 230 MYTHAALVKGLCDARRGEEGLYMLQKMKELGWR-PATRAYAALVDLWCREQKAEEAEKML 288

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+ D G VP   T   V +A
Sbjct: 289 NEMFDNGLVPCAVTCTAVVNA 309



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 102/235 (43%), Gaps = 14/235 (5%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           GNG      +   LI  L + G V+EA + F  ++    RP+   +N VIN LC+ G F+
Sbjct: 398 GNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFD 457

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
            A   LE+M   G  C PD YTY+  I + CK     G R+ +             ML K
Sbjct: 458 VACTFLEKMVSAG--CAPDTYTYSPFIENLCK---TKGSREGLS--------FIDEMLQK 504

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
              P  V Y  +ID   K      A  ++  M   GC P+ VTY + +R Y     + +A
Sbjct: 505 DVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEA 564

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             ++ +M+     +  + +Y  +I      G+   A   L  +    S+P  +T+
Sbjct: 565 ENVVMEMKK-GGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTF 618



 Score = 38.5 bits (88), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 13/151 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++   EE  ++E  +    MK+     +   Y  ++N  C++  +  A  LL  M   G
Sbjct: 672 ILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHG 731

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F   P++ +Y  L+S +   G      +A R     A  +FR + +K +  D + +  +I
Sbjct: 732 FL--PNLISYQYLLSGFTAEG------QADR-----AKEIFRGLRWKEYNTDEIVWKIII 778

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           DG  +    +   ++   + +  C P+  TY
Sbjct: 779 DGLIRQGHPDMCHDMISILEQMKCKPSDETY 809


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 114/238 (47%), Gaps = 13/238 (5%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI+ L   G   +A+     M  F C PD+  YN +I   C+     KA  + +
Sbjct: 206 TKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFD 265

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            ++     C PDV TYT +IS YCK G           ++ EA+ L   ML  G  P  V
Sbjct: 266 DVKSSS-GCSPDVVTYTSMISGYCKAG-----------KMQEASVLLDDMLRLGIYPTNV 313

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            +N L+DG  K   +  A E+   M   GC P+ VT+ S I  Y  V ++++   +  +M
Sbjct: 314 TFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEM 373

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            N     P + +Y+ +I+ALC+  R+L+AR+ L +L     +P+ + Y  V D    A
Sbjct: 374 -NARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKA 430



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 26/241 (10%)

Query: 192 FYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
           F+   +F+   R   + YN++  +LC+ G  + A  + E M+  G    P+      L+S
Sbjct: 89  FWEFSRFKLNIRHSFWTYNLLTRSLCKAGMHDLAGQMFECMKSDGI--SPNSRLLGFLVS 146

Query: 250 SYCKYG---------MQT----GCRKAIRR---------RIWEANHLFRLMLFKGFVPDV 287
           S+ + G         +Q+    GC   +           R+ +A  LF   L      D 
Sbjct: 147 SFAEKGKLHCATALLLQSYEVEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDT 206

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             +N LI G C   + E+A+EL   M+  GC+P+ VTYN+ I+ +   NE+ KA EM   
Sbjct: 207 KTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDD 266

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           +++ +   P   +YT +I   C+AG++ EA   L +++  G  P   T+ ++ D    A 
Sbjct: 267 VKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAG 326

Query: 408 E 408
           E
Sbjct: 327 E 327



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 16/266 (6%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           L KA E +  V+       + +T   M   + +   ++     L DM R G     T  +
Sbjct: 257 LKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLG--IYPTNVT 314

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              L+    + G ++ A     +M  F C PDV  +  +I+  CRVG  N+   L E+M 
Sbjct: 315 FNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMN 374

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G    P+ +TY+ILI++ CK             R+ +A  L   +  K  +P    YN
Sbjct: 375 ARGMF--PNAFTYSILINALCK-----------ENRLLKARELLGQLASKDIIPQPFMYN 421

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +IDG CK  ++  A+ + ++M KK C P+++T+   I  + +   + +A+ +  KM  +
Sbjct: 422 PVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAI 481

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEA 377
               P   + + ++  L +AG   EA
Sbjct: 482 GCS-PDKITVSSLLSCLLKAGMAKEA 506


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 14/234 (5%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   +IK + + G V +AL    RM +F C PD   +N+++N LCR    +K R +L ++
Sbjct: 236 SFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRL 295

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  G  C P+V TYT +IS YCK G           R+ +A  ++  M+  G  P+VV Y
Sbjct: 296 QRDGV-CMPNVVTYTSVISGYCKAG-----------RMEDAMAVYNDMVAVGTSPNVVTY 343

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI+G  K   +  A+ ++  M  + C+P+ VT++S I  Y    ++D A+++  +M  
Sbjct: 344 NVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQ 403

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL-VDGGSVPREYTYKLVCDAL 403
             H  P + ++  IIH  C+  R  EA  FL ++ +     P+ + Y  V D L
Sbjct: 404 Y-HIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVL 456



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 46/246 (18%)

Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME--------------LPG------- 234
            Q    P  ++Y  VI+ +C+ G    A  L +QM               L G       
Sbjct: 119 SQLAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGL 178

Query: 235 -------------FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
                        F C  + Y Y  L+  +  +G           R+ +A  LF   +  
Sbjct: 179 LDAAAALLSKASQFGCSIEAYAYNKLMDLFIGHG-----------RVQDAVALFEGWIQG 227

Query: 282 G-FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           G + PDV ++N +I G CK   +++ALEL + M++ GC P+ VT+N  +       E+ K
Sbjct: 228 GVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSK 287

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
             E++R++Q     +P   +YT +I   C+AGR+ +A     ++V  G+ P   TY ++ 
Sbjct: 288 GREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLI 347

Query: 401 DALNAA 406
           +    A
Sbjct: 348 NGYGKA 353



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 18/234 (7%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           DM   G    V T +V  LI   G+ G +  A+A + +M   RC PDV  ++ +I+  CR
Sbjct: 330 DMVAVGTSPNVVTYNV--LINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCR 387

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
            G  + A  +  +M    +   P+ +T+ I+I ++CK           + R  EA H  +
Sbjct: 388 CGQLDDAMKIWTEMA--QYHIQPNAHTFCIIIHTFCK-----------QNRSGEALHFLK 434

Query: 277 LMLFK-GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
            M  +    P    YN +ID  CK  +++ A  +  +M +KGC P++ TY   I  + + 
Sbjct: 435 KMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMK 494

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             I +A+    KM       P S      I  L ++G   E  D +  +  GG+
Sbjct: 495 GRIAEAVTFFHKMVETGCS-PDSIVVNSFISCLLKSGMPGEV-DHIMRIAAGGA 546



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 12/188 (6%)

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPDVVAYNCLIDG 296
           PP  ++Y  +IS  C+ G  T           +A  LF  M  + G+ P+    + L   
Sbjct: 124 PPSAHSYRYVISLMCQSGRHT-----------DALQLFDQMTDQSGYFPNARFLSFLSGS 172

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
           C     ++ A  L    ++ GC      YN  +  +     +  A+ +           P
Sbjct: 173 CAAAGLLDAAAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSP 232

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              S+  +I  +C+ G V +A + +  + + G  P   T+ ++ + L  A+E S   + L
Sbjct: 233 DVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVL 292

Query: 417 RKRIRDGI 424
           R+  RDG+
Sbjct: 293 RRLQRDGV 300


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 117/234 (50%), Gaps = 19/234 (8%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           L+  +  M+ R NG    T S+  LI      G ++ A++ F RM Q      VYAYN +
Sbjct: 387 LYSNMSLMNLRPNG---ITYSI--LIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSL 441

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           IN  C+ G+ + A  L  +M   G    P   T+T LIS YCK             ++ +
Sbjct: 442 INGQCKFGDLSAAESLFIEMTNKGVE--PTATTFTSLISGYCK-----------DLQVQK 488

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L+  M+  G  P+V  +  LI G C T ++  A ELFD++ ++   P  VTYN  I 
Sbjct: 489 AFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIE 548

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            Y    +IDKA E++  M      VP + +Y P+I  LC  GRV +A+DF+ +L
Sbjct: 549 GYCRDGKIDKAFELLEDMHQ-KGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDL 601



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 122/236 (51%), Gaps = 16/236 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T ++V+ L+  L ++G +++A     ++ +F   P+++ YN +IN+LC+ G+ +KA  L 
Sbjct: 329 TEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLY 388

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
             M L   R  P+  TY+ILI S+C+ G           R+  A   F  M+  G    V
Sbjct: 389 SNMSLMNLR--PNGITYSILIDSFCRSG-----------RLDVAISYFDRMIQDGIGETV 435

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
            AYN LI+G CK   +  A  LF +M  KG  P   T+ S I  Y    ++ KA ++  K
Sbjct: 436 YAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNK 495

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           M  +++G+ P   ++T +I  LC   ++ EA +   ELV+    P E TY ++ + 
Sbjct: 496 M--IDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEG 549



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 16/164 (9%)

Query: 160 RRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           +R     V  +S+T  C +  L +EG + EA+   + M +     +   +N++I   C++
Sbjct: 739 KRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLK-GLLANTVTHNIIIRGFCKL 797

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G F++A  +L +M   G    PD  TY+ LI  YC+ G           ++W+       
Sbjct: 798 GRFHEATKVLSEMTENGIF--PDCVTYSTLIYEYCRSG-----NVGASVKLWDT------ 844

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
           ML +G  PD+VAYN LI GCC    +++A EL DDM ++G IP+
Sbjct: 845 MLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 120/273 (43%), Gaps = 21/273 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           DF+ D+ ++ N +L      + L+    +EG + EAL+    M Q     D+  + V+I+
Sbjct: 596 DFIDDLHKQ-NVKL-NEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLID 653

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
              +  +      LL+ M   G R  PD   YT +I +Y K G     +KA     W+  
Sbjct: 654 GALKQPDRKTFFDLLKDMHDQGLR--PDNVIYTSMIDTYSKEG---SFKKAFE--CWD-- 704

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
               LM+ +   P+VV Y  L++G CK   ++RA  LF  M      PN +TY  F+   
Sbjct: 705 ----LMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNL 760

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
           +    + +AI +   M  L   +  + ++  II   C+ GR  EA   L+E+ + G  P 
Sbjct: 761 TKEGNMKEAIGLHHAM--LKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPD 818

Query: 393 EYTYKLV----CDALNAAEEPSLLDDGLRKRIR 421
             TY  +    C + N      L D  L + + 
Sbjct: 819 CVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLE 851



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 14/224 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           RPD Y  + V+ ++C + +F +A+  +  ME  GF     + TY +LI   CK       
Sbjct: 222 RPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLS--IVTYNVLIHGLCK------- 272

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+ EA  + R +  KG   DVV Y  L+ G C+  + E  ++L D+M + G  P
Sbjct: 273 ----GDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSP 328

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
                +  +       +ID A E++ K+      VP    Y  +I++LC+ G + +A   
Sbjct: 329 TEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGF-VPNLFVYNALINSLCKGGDLDKAELL 387

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
            + +      P   TY ++ D+   +    +      + I+DGI
Sbjct: 388 YSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGI 431



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 107/254 (42%), Gaps = 39/254 (15%)

Query: 149 KGLWDFLKDMSRRG--NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           K  +D LKDM  +G     ++ TS    +I    +EG   +A   +  M    C P+V  
Sbjct: 662 KTFFDLLKDMHDQGLRPDNVIYTS----MIDTYSKEGSFKKAFECWDLMVTEECFPNVVT 717

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ---TGCRKA 263
           Y  ++N LC+ G  ++A  L ++M+      PP+  TY   + +  K G      G   A
Sbjct: 718 YTALMNGLCKAGEMDRAGLLFKRMQAANV--PPNSITYGCFLDNLTKEGNMKEAIGLHHA 775

Query: 264 IRR--------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           + +                    R  EA  +   M   G  PD V Y+ LI   C++  +
Sbjct: 776 MLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNV 835

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
             +++L+D M  +G  P+ V YN  I    V  E+DKA E+   M  L  G+   + Y  
Sbjct: 836 GASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDM--LRRGIIPDNKY-- 891

Query: 364 IIHALCEAGRVLEA 377
               L + G + EA
Sbjct: 892 ----LQKKGTIFEA 901



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 98/202 (48%), Gaps = 14/202 (6%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V   + ++N L +V  F     L ++    G R  PD YT + ++ S C+  ++   R
Sbjct: 188 PEVRTLSALLNGLLKVRKFITVWELFDESVNAGVR--PDPYTCSAVVRSMCE--LKDFLR 243

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              + R  EAN         GF   +V YN LI G CK  R+  A+E+   +  KG   +
Sbjct: 244 AKEKIRWMEAN---------GFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAAD 294

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VTY + +  +  + + +  I++M +M  L    PT ++ + ++  L + G++ +A + +
Sbjct: 295 VVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFS-PTEAAVSGLVDGLRKQGKIDDAYELV 353

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            ++   G VP  + Y  + ++L
Sbjct: 354 VKVGRFGFVPNLFVYNALINSL 375



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 9/197 (4%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           +Y ++++AL     F  A  LL  + L     P  V+++ +     CK+    G    ++
Sbjct: 105 SYAIMVHALVHSRLFWPANSLLHTLLLRESH-PKCVFSHFLDSYKRCKFSSTLGFNLLVQ 163

Query: 266 R-----RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 RI++A  + +LM     +P+V   + L++G  K  +     ELFD+    G  P
Sbjct: 164 NYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRP 223

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARD 379
           +  T ++ +R    + +  +A E +R M+   +G   S  +Y  +IH LC+  RV EA +
Sbjct: 224 DPYTCSAVVRSMCELKDFLRAKEKIRWME--ANGFDLSIVTYNVLIHGLCKGDRVSEAVE 281

Query: 380 FLAELVDGGSVPREYTY 396
               L   G      TY
Sbjct: 282 VKRSLGGKGLAADVVTY 298


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 157/364 (43%), Gaps = 34/364 (9%)

Query: 46  ESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDP 105
           E V + L  +P          G     R    +   I K   + +AN++L   P+    P
Sbjct: 265 EQVHEALSQMPEH--------GCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKP 316

Query: 106 QKVTL-----GLNKATEFYHWVERFFDFFH-----NEMTCKEMGIVFARGNNVKGLWDFL 155
             V       GL  A  +    +   + F      +++T   +   F +   V  + + L
Sbjct: 317 NVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELL 376

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           + M   G    V T   T +I    +EGLV+EA+     M    C+P+  +Y +V+  LC
Sbjct: 377 EQMLEHGCIPDVIT--YTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLC 434

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
           R   +  A+ L+  M   G  C P+  T+  LI+  CK G+           + +A  L 
Sbjct: 435 RAERWVDAQELISHMIQQG--CLPNPVTFNTLINFMCKKGL-----------VEQAIELL 481

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
           + ML  G  PD+++Y+ +IDG  K  + E ALEL + M  KG  PN + Y+S     S  
Sbjct: 482 KQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSRE 541

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
              DK I+M   +Q+       ++ Y  +I +LC+      A DF A +V  G +P E T
Sbjct: 542 GRTDKIIQMFDSIQDATVR-SDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNEST 600

Query: 396 YKLV 399
           Y ++
Sbjct: 601 YTIL 604



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 122/258 (47%), Gaps = 29/258 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++  + E+G V+E +    ++  F C PD+ +YN V+  LC    ++    L+ +M   G
Sbjct: 184 VVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVG 243

Query: 235 FRCPPDVYTYTILISSYCKYGM------------QTGCRKAIR--RRIWE---------- 270
             CPP+V T+  LI+  C+ G+            + GC   +R    I +          
Sbjct: 244 --CPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEV 301

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           AN +   M   G  P+VV YN ++ G C   R E A +L  +M ++ C  + VT+N  + 
Sbjct: 302 ANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVD 361

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
           ++     +D+ IE++ +M  L HG +P   +YT +I+  C+ G V EA   L  +   G 
Sbjct: 362 FFCQNGLVDRVIELLEQM--LEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGC 419

Query: 390 VPREYTYKLVCDALNAAE 407
            P   +Y +V   L  AE
Sbjct: 420 KPNTISYTIVLKGLCRAE 437



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 14/218 (6%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EA      M Q  C  D   +N++++  C+ G  ++   LLEQM   G  C PDV TYT 
Sbjct: 336 EAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHG--CIPDVITYTT 393

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           +I+ +CK G+           + EA  L + M   G  P+ ++Y  ++ G C+  R   A
Sbjct: 394 VINGFCKEGL-----------VDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDA 442

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
            EL   M ++GC+PN VT+N+ I +      +++AIE++++M  +N   P   SY+ +I 
Sbjct: 443 QELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQML-VNGCSPDLISYSTVID 501

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
            L +AG+  EA + L  +++ G  P    Y  +  AL+
Sbjct: 502 GLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALS 539



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 99/234 (42%), Gaps = 16/234 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++ L   GL+ +AL     M    C       +V++ A CR G F  A   L+ +   G
Sbjct: 114 IVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKG 173

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  D     +++S+ C+ G            + E   L R +   G  PD+V+YN ++
Sbjct: 174 --CTLDSGNCNLVVSAICEQGC-----------VDEGVELLRKLPSFGCEPDIVSYNAVL 220

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   R +   EL  +M + GC PN  T+N+ I Y       ++  E + +M    HG
Sbjct: 221 KGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMP--EHG 278

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
             P    Y  II  +C+ G    A D L+ +   G  P    Y  V   L +AE
Sbjct: 279 CTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAE 332



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 36/227 (15%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-------- 255
           V AYN +I   CR G    AR L   + +     PP+ YTY  ++ S C  G        
Sbjct: 76  VVAYNAMIAGYCRAGQVAAARRLAAAVPV-----PPNAYTYFPIVRSLCARGLIADALTV 130

Query: 256 -------------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                              ++  CR    R    A    +++  KG   D    N ++  
Sbjct: 131 LDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRA---LQVLHAKGCTLDSGNCNLVVSA 187

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            C+   ++  +EL   +   GC P+ V+YN+ ++   +    D   E+M +M  +    P
Sbjct: 188 ICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCP-P 246

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +++  +I  LC  G   +  + L+++ + G  P    Y  + D +
Sbjct: 247 NVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGI 293


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I+ + +EG+V+ A      ++   C PDV +YN+++ AL   G + +   L+ +M    
Sbjct: 265 IIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM--FS 322

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +C P+V TY+ILI++ C+ G           +I EA +L +LM  KG  PD  +Y+ LI
Sbjct: 323 EKCDPNVVTYSILITTLCRDG-----------KIEEAMNLLKLMKEKGLTPDAYSYDPLI 371

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              C+  R++ A+E  + M   GC+P+ V YN+ +       + D+A+E+  K+  +   
Sbjct: 372 AAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCS 431

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P SSSY  +  AL  +G  + A   + E+V  G  P E TY  +   L
Sbjct: 432 -PNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCL 479



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 140/307 (45%), Gaps = 55/307 (17%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L++ L  +G   E      +M   +C P+V  Y+++I  LCR G   +A  LL+ M
Sbjct: 296 SYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLM 355

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  G    PD Y+Y  LI+++C+ G           R+  A      M+  G +PD+V Y
Sbjct: 356 KEKGL--TPDAYSYDPLIAAFCREG-----------RLDVAIEFLETMISDGCLPDIVNY 402

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF---------------------- 328
           N ++   CK  + ++ALE+F  + + GC PN  +YN+                       
Sbjct: 403 NTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVS 462

Query: 329 -------IRYYSVVN------EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
                  I Y S+++       +DKA E++  M++     P+  +Y  ++   C+A R+ 
Sbjct: 463 NGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFH-PSVVTYNIVLLGFCKAHRIE 521

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALN----AAEEPSLLDDGLRKRIRDGIEYRFRQV 431
           +A D L  +V  G  P E TY ++ + +      AE   L +D +  RI    EY F+++
Sbjct: 522 DAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV--RINAISEYSFKRL 579

Query: 432 MKVKPIM 438
            +  P++
Sbjct: 580 HRTFPLL 586



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 14/212 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A     RM+     PD   YN++I +LC  G  + A  +L+Q  L    C P V TY
Sbjct: 170 IDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQ--LLSDNCQPTVITY 227

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           TILI +    G            + EA  L   ML +G  PD+  YN +I G CK   ++
Sbjct: 228 TILIEATMLEG-----------GVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVD 276

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           RA E+  ++  KGC P+ ++YN  +R      + ++  ++M KM +     P   +Y+ +
Sbjct: 277 RAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFS-EKCDPNVVTYSIL 335

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           I  LC  G++ EA + L  + + G  P  Y+Y
Sbjct: 336 ITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSY 367



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 15/212 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            F R   +    +FL+ M    +G L    +   ++  L + G  ++AL  F ++ +  C
Sbjct: 373 AFCREGRLDVAIEFLETMI--SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGC 430

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+  +YN + +AL   G+  +A  ++ +M   G    PD  TY  +IS  C+ GM    
Sbjct: 431 SPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGI--DPDEITYNSMISCLCREGM---- 484

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  + +A  L   M    F P VV YN ++ G CK +RIE A+++ D M   GC P
Sbjct: 485 -------VDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRP 537

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           N  TY   I          +A+E+   +  +N
Sbjct: 538 NETTYTVLIEGIGFAGYRAEAMELANDLVRIN 569



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 15/185 (8%)

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           CR GN+ ++  LLE M   G+   PDV   T LI  +          KA+  R+ E    
Sbjct: 96  CRSGNYIESLHLLETMVRKGYN--PDVILCTKLIKGFFTL---RNVPKAV--RVME---- 144

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
              +L K   PDV AYN LI+G CK  RI+ A  + D M  K   P+ VTYN  I     
Sbjct: 145 ---ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCS 201

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
             ++D A++++ ++ + ++  PT  +YT +I A    G V EA   L E++  G  P  +
Sbjct: 202 RGKLDLALKVLDQLLS-DNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMF 260

Query: 395 TYKLV 399
           TY  +
Sbjct: 261 TYNTI 265



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C++     +L L + M +KG  P+ +     I+ +  +  + KA+ +M  ++    G P 
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKF--GQPD 153

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +Y  +I+  C+  R+ +A   L  +      P   TY ++  +L
Sbjct: 154 VFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSL 199


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 38/263 (14%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L ++G  ++A+  F  M+  R  PD++ YN VI+ LC+ GN  KAR LLE+M   G
Sbjct: 103 LIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRG 162

Query: 235 FRCPPDVYTYTILISS-YCKYG-------MQTGCRKA-----------------IRRRIW 269
            +  PD+ TY  LI++  CK G       +  G + A                 +  R+ 
Sbjct: 163 GKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVV 222

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA  + + M      PD+V +N L+DG CK   + RALE+ ++M ++  +P+ +TY   +
Sbjct: 223 EAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILV 279

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE---------ARDF 380
                V ++  A  ++ ++    + +P   +YT ++  LC++G + E         AR+ 
Sbjct: 280 NGLCRVGQVQVAFYLLEEIVRQGY-IPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREI 338

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           LAE+V    VP  +TY +V   L
Sbjct: 339 LAEMVSINMVPPLFTYNIVLGGL 361



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 109/248 (43%), Gaps = 36/248 (14%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G++  AL     M +    PDV  Y +++N LCRVG    A +LLE++   G+   PDV 
Sbjct: 251 GMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGY--IPDVI 308

Query: 243 TYTILISSYCKYGMQTGCRKAIRR---------------------------------RIW 269
            YT L+   CK G      K ++                                   I 
Sbjct: 309 AYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSIS 368

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A  L   ++ +G+VPDVV YN LIDG CK  R+  A +L D+M   GC PN VT  S +
Sbjct: 369 KAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVV 428

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                V  +D A  ++ +M    H  P    YT +I  LC++ R+ +A   L  +   G 
Sbjct: 429 FGLCRVGRVDDAWSLVVEMSRKRHA-PNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGV 487

Query: 390 VPREYTYK 397
              ++ Y+
Sbjct: 488 ALDDFAYR 495



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 93/185 (50%), Gaps = 17/185 (9%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C P++  + ++I   C+ G   +A   L  ++   F   PDVY +  LI    K G    
Sbjct: 58  CSPNLVTFKILIRGNCKAGQATRALEFLRALD--EFSVAPDVYIFNFLIHGLFKDGNPD- 114

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG-- 317
                     +A  LF  M      PD+  YN +I G CK+  +E+A EL ++M ++G  
Sbjct: 115 ----------QAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGK 164

Query: 318 CIPNRVTYNSFIRYYSVVN-EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
             P+ VTYN+ I      + ++++A+E++  M+ L    P   +Y  IIHALC AGRV+E
Sbjct: 165 SAPDIVTYNTLINAGICKDGDVEEALEILDGMK-LAGPAPDVITYNSIIHALCVAGRVVE 223

Query: 377 ARDFL 381
           A + L
Sbjct: 224 AAEIL 228



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 14/165 (8%)

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           DV++Y  L+    K G Q           +    +++ +L  G  P++V +  LI G CK
Sbjct: 26  DVHSYNHLLDILVKSGHQ-----------FRTGKVYKDLLHSGCSPNLVTFKILIRGNCK 74

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             +  RALE    +++    P+   +N  I         D+A+++   M++ +   P   
Sbjct: 75  AGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMES-SRVNPDIF 133

Query: 360 SYTPIIHALCEAGRVLEARDFLAELV--DGGSVPREYTYKLVCDA 402
           +Y  +I  LC++G + +AR+ L E++   G S P   TY  + +A
Sbjct: 134 TYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINA 178



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 15/175 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            + D+  RG    V T +   LI  L +   V EA      M    C P+      V+  
Sbjct: 373 LISDLVARGYVPDVVTYNT--LIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFG 430

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LCRVG  + A  L+ +M     R  P+V  YT LI   CK             R+ +A  
Sbjct: 431 LCRVGRVDDAWSLVVEMSRK--RHAPNVVVYTSLIDGLCK-----------SDRMDDACV 477

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
           +   M  +G   D  AY  LI       R+  A+ ++D+M  +G +P+  T  + 
Sbjct: 478 VLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 532


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 127/259 (49%), Gaps = 26/259 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++ L + G++ +AL  F  MK   C P +  YNV+IN+ C  G F KA  L + M+   
Sbjct: 16  VVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREK 75

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRK-------------------AIRRRIWEAN--- 272
            R  PD +TY  LIS  C  G   G RK                    I+  + EA    
Sbjct: 76  -RVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEE 134

Query: 273 --HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
              +   M+  G  PDV A+N ++ G  ++  +E+A E++  M + G  P+ V+Y+  I 
Sbjct: 135 SYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIH 194

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             + + ++D++++++ +M     G VP   +++ +IH LC  G + +A +    +++ G 
Sbjct: 195 GLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGC 254

Query: 390 VPREYTYKLVCDALNAAEE 408
            P +YTY  +   L  AE+
Sbjct: 255 KPNKYTYTTLIAGLCRAEK 273



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 118/251 (47%), Gaps = 15/251 (5%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L +M+ R  G +    + + LI  L   G + +AL  F  M +  C+P+ Y Y  +I  
Sbjct: 208 ILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAG 267

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LCR     +AR L E+M       PPD   Y  LI+ YCK G            + EA  
Sbjct: 268 LCRAEKVIQARELFEKMTQACI--PPDAVAYNSLIAGYCKRG-----------SMDEAEK 314

Query: 274 LFRLML-FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
           L+R M    G  P +V +N LIDG CK  ++ RA EL  +M  KG   +  TY   I   
Sbjct: 315 LYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGL 374

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
           S   ++D+A+E+ ++M+     +   S  +  +  LC+ G + +A          G+VP 
Sbjct: 375 SRATKLDEALEVYKQMREKKFLLDPVSCVS-FVGGLCKTGNIDQAYAVFEATRKSGAVPN 433

Query: 393 EYTYKLVCDAL 403
             T++++ ++L
Sbjct: 434 PETFRILSESL 444



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 137/316 (43%), Gaps = 57/316 (18%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
            N +G    L +M  +     V T S   +IK L +E    E+      M    C PDV+
Sbjct: 95  GNTEGARKLLSEMRDKNIAANVFTYS--SIIKSLVKEAKPEESYKVLEEMMAAGCNPDVF 152

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           A+N V+    R  N  KAR + + M   G++  PD  +Y ILI    K G          
Sbjct: 153 AFNGVMQGFARSNNMEKAREVYQHMVESGYK--PDNVSYHILIHGLAKIG---------- 200

Query: 266 RRIWEANHLFRLMLFK--GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR- 322
            ++ E+  +   M  +  G+VP+V+ ++ LI G C+T  +E+ALE+F  M + GC PN+ 
Sbjct: 201 -KLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKY 259

Query: 323 ----------------------------------VTYNSFIRYYSVVNEIDKAIEMMRKM 348
                                             V YNS I  Y     +D+A ++ R+M
Sbjct: 260 TYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREM 319

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
                  PT  ++  +I   C+ G++  A + +AE+   G      TY+++   L+ A +
Sbjct: 320 SGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATK 379

Query: 409 PSLLDDGLR--KRIRD 422
              LD+ L   K++R+
Sbjct: 380 ---LDEALEVYKQMRE 392



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%)

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           AY+ ++    K   + +ALE+F+ M  + C+P+ VTYN  I       E  KA+++ + M
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           +      P   +Y  +I  LC +G    AR  L+E+ D       +TY  +  +L    +
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 409 P 409
           P
Sbjct: 132 P 132


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 20/234 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L+  L ++ L +     + +M +     +++ YNV+I+A C+ G+  KA  LL +M
Sbjct: 167 ACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEM 226

Query: 231 ELPGFRCP-PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           E    +C  PD++TY  LIS YCK GM            +EA  +   M  +G  PD+V 
Sbjct: 227 E---SKCVFPDLFTYNTLISLYCKKGMH-----------YEALSVQDRMEREGIKPDIVT 272

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN LI G CK  R+  A+ LF ++  +   PN VTY + I  Y  +N++D+A+ +  +M+
Sbjct: 273 YNSLIHGFCKEGRMREAMRLFKEI--RDATPNHVTYTTLIDGYCRLNDLDQALRLREEME 330

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
               G+ PT  +Y  I+  LCE GR+ +A   L E+ +    P   T   + +A
Sbjct: 331 A--QGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINA 382



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 14/223 (6%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
             G   T  +   +++ L E G + +A      M + +  PD    N +INA C++G+  
Sbjct: 331 AQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMK 390

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
            A  +  +M   G +   D +TY  LI  +CK     G           A  L   ML  
Sbjct: 391 SALKVKNRMVEAGLKL--DQFTYKALIHGFCKIREMDG-----------AKELLLSMLDA 437

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           GF P    Y+ L+DG C     E  L+L D+  +KG   ++  Y + IR +    ++D A
Sbjct: 438 GFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYA 497

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            ++   MQ     +  S  YT + +A  + G+   A D L E+
Sbjct: 498 KKIFSLMQE-KGTLGDSVIYTSLAYAYWKLGKANAASDLLDEM 539



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 72/186 (38%), Gaps = 43/186 (23%)

Query: 270 EANHLFRLMLFKGFVPDVVA-----------------------------------YNCLI 294
           EA  +F  M+  GF P + A                                   YN LI
Sbjct: 148 EAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLI 207

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
             CCK+  +E+A  L  +M  K   P+  TYN+ I  Y       +A+ +  +M+    G
Sbjct: 208 HACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRME--REG 265

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
           + P   +Y  +IH  C+ GR+ EA     E+ D  + P   TY  + D      +   LD
Sbjct: 266 IKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRD--ATPNHVTYTTLIDGYCRLND---LD 320

Query: 414 DGLRKR 419
             LR R
Sbjct: 321 QALRLR 326


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 140/304 (46%), Gaps = 42/304 (13%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI      G +++AL     M++ R +P V  YNV+IN  C++G  ++AR L+ +M
Sbjct: 332 TFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEM 391

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E  G +  PDV TY+ ++S YCK G               A  L R ML KG VPD + Y
Sbjct: 392 EAKGMK--PDVVTYSTILSGYCKIGDTD-----------SAFELNRKMLKKGVVPDAITY 438

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + LI G C+  R+  A ELF+ M + G  P+  TY + I  +     + KA+ +  +M  
Sbjct: 439 SSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEM-- 496

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
           +  GV P   +Y+ +I  L ++ R  EA+  L +L     VP    Y+ +      AE  
Sbjct: 497 IKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFK 556

Query: 410 SLLD-------DGL-------------RKRIRDGIEYRF------RQVMKVKPIMKHKEL 443
           S++         GL             R    DG  Y        R    +K +  HK+L
Sbjct: 557 SVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQL 616

Query: 444 LKCG 447
           L+CG
Sbjct: 617 LRCG 620



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 118/258 (45%), Gaps = 27/258 (10%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L+    + G ++EALA F  M Q    PDV  +  +I+A+CR GN  +A  L+ QM
Sbjct: 262 SYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQM 321

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------------------------ 266
              G R   + +T+T LI  +C+ G       A++                         
Sbjct: 322 RERGLRM--NEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLG 379

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           R+ EA  L   M  KG  PDVV Y+ ++ G CK    + A EL   M KKG +P+ +TY+
Sbjct: 380 RMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYS 439

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           S IR       +  A E+  KM  L    P   +YT +I   C+ G V +A     E++ 
Sbjct: 440 SLIRGLCEERRLGDACELFEKMLQLGL-QPDEFTYTTLIDGHCKEGNVQKALSLHDEMIK 498

Query: 387 GGSVPREYTYKLVCDALN 404
            G +P   TY ++ D L+
Sbjct: 499 KGVLPDVVTYSVLIDGLS 516



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 121/281 (43%), Gaps = 50/281 (17%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR-MKQFRCRPDVYAYNVVIN 212
            L  M R G    V T ++  L++ L   G   EAL      M+   C P+V  YN ++ 
Sbjct: 141 LLASMLRDGVAPNVYTYNI--LVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVA 198

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           A CR G  + A  L+  M   G R  P + T+  +++  CK G           R+ +A 
Sbjct: 199 AFCRAGEVDAAERLVGVMREGGVR--PSLVTFNTVVNGLCKAG-----------RMEDAR 245

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F  M  +G  PD V+YN L+ G CK   +  AL +F +M +KG +P+ VT+ S I   
Sbjct: 246 KMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAM 305

Query: 333 SVVNEIDKAIEMMRKMQN----------------------LNHGV------------PTS 358
                +++A+ ++ +M+                       L+  +            P+ 
Sbjct: 306 CRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSV 365

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             Y  +I+  C+ GR+ EAR+ + E+   G  P   TY  +
Sbjct: 366 VCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTI 406



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 48/202 (23%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+VY YN+++ ALC  G   +A  ++   ++ G  C P+V TY  L++++C+ G      
Sbjct: 152 PNVYTYNILVRALCARGQREEALGVVGD-DMRGAGCAPNVVTYNTLVAAFCRAG------ 204

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 +  A  L  +M   G  P +V +N +++G CK  R+E A ++FD+M ++G    
Sbjct: 205 -----EVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGL--- 256

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
                                             P   SY  ++   C+AG + EA    
Sbjct: 257 ---------------------------------TPDGVSYNTLVSGYCKAGCLHEALAVF 283

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
           AE+   G VP   T+  +  A+
Sbjct: 284 AEMAQKGVVPDVVTFTSLIHAM 305



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 44/205 (21%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           + +T SS   LI+ L EE  + +A   F +M Q   +PD + Y  +I+  C+ GN  KA 
Sbjct: 434 DAITYSS---LIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKAL 490

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG--------------------------MQT 258
            L ++M   G    PDV TY++LI    K                            +  
Sbjct: 491 SLHDEMIKKGVL--PDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMH 548

Query: 259 GCRKA-------------IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            CR A             ++  + +A+ +++ ML + +  D   Y+ LI G C+   I +
Sbjct: 549 CCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMK 608

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIR 330
           AL     + + G  PN  +  S +R
Sbjct: 609 ALSFHKQLLRCGFSPNSTSTISLVR 633


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 26/243 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRM------KQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           LIK L   G +N AL     M       +  C+P+V  YN++++ LC+VG  ++A+ L E
Sbjct: 180 LIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFE 239

Query: 229 QMELPGF--------RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           +M+  G            PD+ T+ +LI + CK G           ++ EA  L  +M+ 
Sbjct: 240 EMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEG-----------KVIEAKKLLGVMIE 288

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G VPD+V YN LI+G C    +  A ELF  M  KGC P+ ++YN  I  YS   ++++
Sbjct: 289 SGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEE 348

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A+++  +M  L    P   +Y  ++  +  AG+V +A+   + +   G     YTY +  
Sbjct: 349 AMKLYNEML-LVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFL 407

Query: 401 DAL 403
           D L
Sbjct: 408 DGL 410



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 20/213 (9%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
            AL  F+ M +    P + ++N +++ L ++ ++++   L  QM L G     D  T  I
Sbjct: 52  HALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLS--SDRCTLNI 109

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           L++  C              R+ E    F  +L +G+ P++V YN LI G C  +RI  A
Sbjct: 110 LLNCLCNV-----------NRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEA 158

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN------LNHGVPTSSS 360
             LF  M K GC P+ VTY + I+       I+ A+++ ++M N      +N   P   +
Sbjct: 159 TRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCK-PNVIT 217

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           Y  I+  LC+ GR  EA+    E+   G +P E
Sbjct: 218 YNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNE 250



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 115/268 (42%), Gaps = 30/268 (11%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +LVT +S   LI+     G +N A   F  M    C PDV +YNV+IN   +     +A 
Sbjct: 294 DLVTYNS---LIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAM 350

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR----------------- 267
            L  +M L G R  P+V TY  L+      G     +K                      
Sbjct: 351 KLYNEMLLVGKR--PNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLD 408

Query: 268 -------IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  ++EA  LF  +    F  ++   NCLIDG CK  ++E A ELF+ ++ +G  P
Sbjct: 409 GLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEP 468

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N VTY   I  +    ++DKA  +++KM+  N   P   +Y  ++    E+ ++ E    
Sbjct: 469 NVVTYTIMIHGFCREGQVDKANVLIQKME-ANGCTPDIITYNTLMRGFYESNKLEEVVQL 527

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEE 408
           L  +      P   T  +V D L+  E+
Sbjct: 528 LHRMAQKDVSPDAITCSIVVDMLSKDEK 555



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 122/276 (44%), Gaps = 50/276 (18%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           E  A F  + +    P++  YN +I  LC     ++A  L  +M+  G  C PDV TY  
Sbjct: 122 EGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLG--CTPDVVTYGT 179

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI   C  G       A++      N + R  +     P+V+ YN ++DG CK  R + A
Sbjct: 180 LIKGLCGTG---NINIALKLHQEMLNDISRYEI--NCKPNVITYNIIVDGLCKVGREDEA 234

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
            +LF++M  +G IPN +              +D+ ++            P   ++  +I 
Sbjct: 235 KQLFEEMKTQGMIPNEM--------------LDQGLQ------------PDMVTFNVLID 268

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA------LNAAEE--PSLLDDGLRK 418
            LC+ G+V+EA+  L  +++ G VP   TY  + +       LN+A E   S+   G   
Sbjct: 269 TLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEP 328

Query: 419 RIRDGIEYR-----FRQVMKVKPIMK-HKELLKCGE 448
              D I Y      + + +KV+  MK + E+L  G+
Sbjct: 329 ---DVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK 361



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 13/140 (9%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           ++ CLI  L + G +  A   F ++      P+V  Y ++I+  CR G  +KA  L+++M
Sbjct: 437 NLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKM 496

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E  G  C PD+ TY  L+  + +             ++ E   L   M  K   PD +  
Sbjct: 497 EANG--CTPDIITYNTLMRGFYE-----------SNKLEEVVQLLHRMAQKDVSPDAITC 543

Query: 291 NCLIDGCCKTYRIERALELF 310
           + ++D   K  + +  L L 
Sbjct: 544 SIVVDMLSKDEKYQECLHLL 563


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 125/238 (52%), Gaps = 17/238 (7%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L+T S+V   I  L ++ L+ +AL  F  +       DV AYN +I+  C VG + +A  
Sbjct: 195 LITYSTV---IDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATR 251

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           LL  M        PD YT+ IL+ + CK G           RI EA  +F +M+ +G  P
Sbjct: 252 LLTMMVRGNIN--PDDYTFNILVDALCKEG-----------RIVEAQGVFAVMMKRGEKP 298

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           D+V YN L++G C +  +  A ELF+ M K+G  P+ + YN  I  Y  ++ +D+A+ + 
Sbjct: 299 DIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLF 358

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++++  N  VP  ++Y  +I  LC+ GR+   ++ + E+ D G  P   TY +  DA 
Sbjct: 359 KEIRCKNL-VPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAF 415



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 112/230 (48%), Gaps = 17/230 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L +EG + EA   F  M +   +PD+  YN ++   C   N ++AR L  +M   G
Sbjct: 271 LVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRG 330

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDV  Y +LI+ YCK  M           + EA  LF+ +  K  VP++  YN LI
Sbjct: 331 LE--PDVLNYNVLINGYCKIDM-----------VDEAMVLFKEIRCKNLVPNLATYNSLI 377

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK  R+    EL D+M  +G  P+ VTYN F+  +      +KAI + R++     G
Sbjct: 378 DGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIV---QG 434

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + P    Y  I+   C+  ++  A + L  L+  G  P   TY ++ +AL
Sbjct: 435 IWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINAL 484



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 121/260 (46%), Gaps = 18/260 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           + +++T LI     +  ++ A +    + +   +P++  +N +IN  C  G  +KA    
Sbjct: 89  SIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFR 148

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
             +   G+  P D ++Y  LI+  CK G QT  R A++        L R        P++
Sbjct: 149 LDLMAKGY--PLDEFSYGSLINGLCKNG-QT--RDALQLLQKMEEDLVR--------PNL 195

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           + Y+ +IDG CK   I  AL LF  +  +G + + V YNS I     V +  +A  ++  
Sbjct: 196 ITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTM 255

Query: 348 M--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           M   N+N   P   ++  ++ ALC+ GR++EA+   A ++  G  P   TY  + +    
Sbjct: 256 MVRGNIN---PDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCL 312

Query: 406 AEEPSLLDDGLRKRIRDGIE 425
           +   S   +   + ++ G+E
Sbjct: 313 SNNVSEARELFNRMVKRGLE 332



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 23/255 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F   NNV    +    M +RG    V   +V  LI    +  +V+EA+  F   K+ RC+
Sbjct: 310 FCLSNNVSEARELFNRMVKRGLEPDVLNYNV--LINGYCKIDMVDEAMVLF---KEIRCK 364

Query: 202 ---PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
              P++  YN +I+ LC++G  +  + L+++M   G    PD+ TY I + ++CK     
Sbjct: 365 NLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQS--PDIVTYNIFLDAFCK----- 417

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                  +   +A  LFR  + +G  PD   Y+ +++  CK  +++ A E    +   GC
Sbjct: 418 ------SKPYEKAISLFR-QIVQGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGC 470

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            PN  TY   I         D+A+ ++ KM + N   P + ++  II AL E     +A 
Sbjct: 471 CPNVRTYTIMINALCKDCSFDEAMTLLSKMDD-NDCPPDAVTFETIIGALQERNETDKAE 529

Query: 379 DFLAELVDGGSVPRE 393
               E+++ G V  E
Sbjct: 530 KLRLEMIERGLVNDE 544



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 16/217 (7%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A++ F ++      P +    ++IN  C   + + A  LL  +   GF+  P++ T+  L
Sbjct: 74  AISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQ--PNMVTFNTL 131

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRL-MLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           I+ +C  GM +   KA+          FRL ++ KG+  D  +Y  LI+G CK  +   A
Sbjct: 132 INGFCINGMVS---KAMA---------FRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDA 179

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
           L+L   M +    PN +TY++ I        I  A+ +   + +    V    +Y  +IH
Sbjct: 180 LQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDV-VAYNSLIH 238

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             C  G+  EA   L  +V G   P +YT+ ++ DAL
Sbjct: 239 GCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDAL 275



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 17/181 (9%)

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
           PP ++ +  L+ +  + G               A  LF  +  KG  P +     LI+  
Sbjct: 52  PPPIFVFDKLLGAIVRMG-----------HYPTAISLFSQLHSKGITPSIATLTILINCY 100

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C    +  A  L   + K G  PN VT+N+ I  + +   + KA  M  ++  +  G P 
Sbjct: 101 CHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKA--MAFRLDLMAKGYPL 158

Query: 358 SS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              SY  +I+ LC+ G+  +A   L ++ +    P   TY  V D L    +  L+ D L
Sbjct: 159 DEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLC---KDRLIADAL 215

Query: 417 R 417
           R
Sbjct: 216 R 216


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 129/267 (48%), Gaps = 18/267 (6%)

Query: 140 IVFARGNNVKGLWDFLKDMSRRGNGE--LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           I  ARG    GL +   +  +R  G    +T S+   LI    + G   +ALA +  M Q
Sbjct: 58  IELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQ 117

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
              RPD Y +NV++NA  +    +    L E+M+     C P+V TY+ILI + CK G  
Sbjct: 118 SGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQ--NCSPNVITYSILIDAVCKCG-- 173

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
            G  KA++        +F  M  +G  P++  Y  +IDG  K+  +++A  LF++M  +G
Sbjct: 174 -GVEKALK--------VFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEG 224

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLE 376
            +  RV YNS I         D A ++ R+M  L+ G+ P   ++T +++ L  AGR  E
Sbjct: 225 LVATRVVYNSLIHGLGRSGRADAAAKLFREM--LSKGLQPDHVTFTSLVYGLGVAGRASE 282

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           AR    E  D G       Y ++ D L
Sbjct: 283 ARRIFQEARDVGCALDVNLYNVLIDTL 309



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 145/349 (41%), Gaps = 74/349 (21%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            F +   V  +W   ++M  +     V T S+  LI  + + G V +AL  F  MK   C
Sbjct: 133 AFKKAKRVDSVWKLFEEMQNQNCSPNVITYSI--LIDAVCKCGGVEKALKVFLDMKSRGC 190

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPG-------------------------- 234
           RP+++ Y  +I+ L + G+ +KA FL E+M   G                          
Sbjct: 191 RPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAK 250

Query: 235 -FR------CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW------------------ 269
            FR        PD  T+T L+     YG+    R +  RRI+                  
Sbjct: 251 LFREMLSKGLQPDHVTFTSLV-----YGLGVAGRASEARRIFQEARDVGCALDVNLYNVL 305

Query: 270 -----------EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                      EA  +F  +   G VPDV  +N L+DG CK+ RI  A  L  DM + GC
Sbjct: 306 IDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGC 365

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            P+   YN+ I        +++A +++ +MQ+L +  P   +Y  +I   C+ GR+ +A 
Sbjct: 366 TPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGY-EPDVVTYNTLIDESCKGGRIEDAL 424

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAA---EEPSLLDDGLRKRIRDGI 424
               E+   G      TY  + + L  A   +E   L +G+++   DG+
Sbjct: 425 RLFEEISAKG-FANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGV 472



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 16/229 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           GL+ +++    RM+  RC     AYN +I+A  + G   KA  +   M   G R  PD Y
Sbjct: 68  GLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLR--PDTY 125

Query: 243 TYTILISSYCKYGMQTGCRKAIR-RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
           T+ +L++++         +KA R   +W+   LF  M  +   P+V+ Y+ LID  CK  
Sbjct: 126 TFNVLMNAF---------KKAKRVDSVWK---LFEEMQNQNCSPNVITYSILIDAVCKCG 173

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
            +E+AL++F DM  +GC PN  TY S I        +DKA  +  +M +    V T   Y
Sbjct: 174 GVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGL-VATRVVY 232

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
             +IH L  +GR   A     E++  G  P   T+  +   L  A   S
Sbjct: 233 NSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRAS 281


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 138/283 (48%), Gaps = 17/283 (6%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           +A  F++W      F H+     EM  +  +  N    W  + D+ +  N E ++  + +
Sbjct: 124 QALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVI-DLMKARNVE-ISIETFS 181

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            LI+     GL +EA+  F RM+ + C+PD  A++++I+ LCR     +A+   + ++  
Sbjct: 182 ILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKD- 240

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
             +  PDV  YT L+  +C+ G            I EA  +F  M   G +P+V  Y  +
Sbjct: 241 --KFEPDVIVYTNLVRGWCRAG-----------NIPEAERVFTEMKVAGCMPNVYTYTIV 287

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ID  C+  +I RA ++F +M   GC PN +T+N+ +R +      +K +++  +M+ +  
Sbjct: 288 IDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMG- 346

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             P + +Y  +I + C+ G + EA   L  +V  G  P   T+
Sbjct: 347 CPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTF 389



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 130/356 (36%), Gaps = 100/356 (28%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFA----------RGNNVKGLWDFLKDMSRRGNG 164
           A+E  H   R  D+      CK   I F+          R    +  +D LKD   +   
Sbjct: 193 ASEAVHAFNRMEDY-----NCKPDKIAFSILISILCRKRRATEAQSFFDSLKD---KFEP 244

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +++     T L++     G + EA   F  MK   C P+VY Y +VI+ALCR G   +A 
Sbjct: 245 DVIV---YTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAH 301

Query: 225 FLLEQM---------------------------------ELPGFRCPPDVYTYTILISSY 251
            +  +M                                 ++    CPPD  TY  LI S+
Sbjct: 302 DVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESH 361

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK G            + EA  +   M+ KG  P+   +N L     K   +  A  L+ 
Sbjct: 362 CKDG-----------NLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYA 410

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ------NLNH---------GV- 355
            M +  C  N VTYN  +R +      D  +++ ++M       N+N          G+ 
Sbjct: 411 KMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMG 470

Query: 356 -------------------PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
                              P+   Y  ++  L +AG++ +  + +A +VD G   R
Sbjct: 471 HWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELVAVMVDRGFATR 526



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 75/197 (38%), Gaps = 50/197 (25%)

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN +I+   +V NF+    +++ M+         + T++ILI  Y + G+ +        
Sbjct: 145 YNEMIDLAGKVRNFDLGWQVIDLMKARNVEI--SIETFSILIRRYVRAGLAS-------- 194

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
              EA H F  M      PD +A++ LI   C+  R   A   FD +  K   P+ + Y 
Sbjct: 195 ---EAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKDK-FEPDVIVYT 250

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           + +R +                                    C AG + EA     E+  
Sbjct: 251 NLVRGW------------------------------------CRAGNIPEAERVFTEMKV 274

Query: 387 GGSVPREYTYKLVCDAL 403
            G +P  YTY +V DAL
Sbjct: 275 AGCMPNVYTYTIVIDAL 291


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 146/325 (44%), Gaps = 29/325 (8%)

Query: 85  KEAYNIA----NNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFD------FFHNEMT 134
           KEA N+     N+ LVL          V L L     F  + E+ FD         +  +
Sbjct: 175 KEAVNMVIEMQNHGLVLKARILNFVIDVALALG----FVDYAEKVFDEMLDRAVVPDSTS 230

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
            K M + + R   +  +  +LKDM  RG    V  ++ T +I    E+G VN A   F +
Sbjct: 231 YKLMVVGYCRMGRISDVDRWLKDMIERGYA--VDNATCTLMISTFSEKGFVNRAFWYFKK 288

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
             Q    P++  ++ +IN LC++G+  +A  +LE+M   G++  P+VYT+T LI   CK 
Sbjct: 289 WVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWK--PNVYTHTALIDGLCKK 346

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G      KA R          +L+    + P+V  Y C+I+G CK  ++ RA  L   M 
Sbjct: 347 GWT---EKAFRL-------FLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMK 396

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           ++G +PN  TY   I  +       +A E+M  M       P   +Y  II  LC+ GR 
Sbjct: 397 EQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGF-TPNIFTYNAIIDGLCKKGRF 455

Query: 375 LEARDFLAELVDGGSVPREYTYKLV 399
            EA   L   +  G    + TY ++
Sbjct: 456 PEAYKLLRRGLKSGLHADKVTYTIL 480



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 109/248 (43%), Gaps = 29/248 (11%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           TC+I    +E  +N A     RMK+    P+   Y  +I+  C+ GNF +A  L++ M  
Sbjct: 373 TCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGK 432

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH------------------- 273
            GF   P+++TY  +I   CK G      K +RR +    H                   
Sbjct: 433 EGF--TPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDN 490

Query: 274 -----LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
                +F  M   G  PD+  YN LI   C+  ++E + +LF++    G +P + TY S 
Sbjct: 491 KQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSM 550

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
           I  Y     I  AI+   KM+  ++G  P S +Y  +I  LC   ++ EA      ++D 
Sbjct: 551 ICGYCRDGHISSAIKFFHKMR--DYGCKPDSITYGALISGLCNESKLDEACQLYETMIDN 608

Query: 388 GSVPREYT 395
           G  P E T
Sbjct: 609 GLSPCEVT 616



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 111/267 (41%), Gaps = 20/267 (7%)

Query: 160 RRG--NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           RRG  +G      + T LI     +    +ALA F RM +   +PD++ YNV+I   CR 
Sbjct: 463 RRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQ 522

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
               ++  L E  E  G    P   TYT +I  YC+ G            I  A   F  
Sbjct: 523 KKVEESEKLFE--EAVGLGLLPTKETYTSMICGYCRDG-----------HISSAIKFFHK 569

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M   G  PD + Y  LI G C   +++ A +L++ M   G  P  VT  +    Y    +
Sbjct: 570 MRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLA--YEYCKQ 627

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            D A  M+  ++ L   +   +  T +I  LC   +V  A  F  +L+D        T  
Sbjct: 628 GDSATAMI-ILERLEKKLWIRTVNT-LIRKLCSEKKVGVAALFFHKLLDKDLNVDRITLA 685

Query: 398 LVCDALNAAEEPSLLDDGLRKRIRDGI 424
               A   + + +L+ D L +RI  GI
Sbjct: 686 AFTTACYESNKFALVSD-LSERISKGI 711


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 124/250 (49%), Gaps = 17/250 (6%)

Query: 157 DMSRRGNGE-LVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           D +RR   E  V   + TC  LI+ L   G    ALA    M + RC PDV  Y +++ A
Sbjct: 145 DAARRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEA 204

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+   + +A  LL++M   G  C PD+ TY ++++  C+ G           R+ +A  
Sbjct: 205 TCKRSGYKQAMKLLDEMRDKG--CTPDIVTYNVVVNGICQEG-----------RVDDAIE 251

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
             + +   G  P+ V+YN ++ G C   R E A EL  +M +KGC PN VT+N  I +  
Sbjct: 252 FLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLC 311

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
               ++ A+E++ ++       P S SY P++HA C+  ++ +A  FL  +V  G  P  
Sbjct: 312 RKGLVEPALEVLEQIPKYGCS-PNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDI 370

Query: 394 YTYKLVCDAL 403
            +Y  +  AL
Sbjct: 371 VSYNTLLTAL 380



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 24/272 (8%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           E TCK  G         K     L +M  +G    + T +V  ++  + +EG V++A+  
Sbjct: 203 EATCKRSG--------YKQAMKLLDEMRDKGCTPDIVTYNV--VVNGICQEGRVDDAIEF 252

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              +  + C P+  +YN+V+  LC    +  A  L+ +M   G  CPP+V T+ +LIS  
Sbjct: 253 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG--CPPNVVTFNMLISFL 310

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           C+ G+           +  A  +   +   G  P+ ++YN L+   CK  ++++A+   D
Sbjct: 311 CRKGL-----------VEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLD 359

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
            M  +GC P+ V+YN+ +       E+D A+E++ ++++     P   SY  +I  L +A
Sbjct: 360 LMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKD-KGCAPVLISYNTVIDGLTKA 418

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           G+  EA + L E+V  G  P   TY  +   L
Sbjct: 419 GKTKEALELLNEMVSKGLQPDIITYSTIAAGL 450



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 132/271 (48%), Gaps = 26/271 (9%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + + +M ++G    V T ++  LI  L  +GLV  AL    ++ ++ C P+  +YN +++
Sbjct: 286 ELMGEMGQKGCPPNVVTFNM--LISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLH 343

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           A C+    +KA   L+ M   G  C PD+ +Y  L+++ C+ G            +  A 
Sbjct: 344 AFCKQKKMDKAMAFLDLMVSRG--CYPDIVSYNTLLTALCRSG-----------EVDVAV 390

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L   +  KG  P +++YN +IDG  K  + + ALEL ++M  KG  P+ +TY++     
Sbjct: 391 ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGL 450

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
              + I+ AI    K+Q++  G+ P +  Y  II  LC+      A D  A ++  G +P
Sbjct: 451 CREDRIEDAIRAFGKVQDM--GIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMP 508

Query: 392 REYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            E TY ++ + L          +GL K  RD
Sbjct: 509 NESTYTILIEGLAY--------EGLIKEARD 531



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 111/258 (43%), Gaps = 34/258 (13%)

Query: 153 DFLKDMSRRGN--------GELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRP 202
           D L+ + RRG         G      + TC  LIK L   G   EA     R     C P
Sbjct: 72  DRLRSLVRRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEA-----RRVLAACGP 126

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           DV AYN ++   C  G  + AR    +  +       D YT   LI   C  G       
Sbjct: 127 DVMAYNAMMAGYCGAGQVDAARRWCAERAVE-----RDAYTCDTLIRGLCGRG------- 174

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               R   A  +   ML +  VPDVV Y  L++  CK    ++A++L D+M  KGC P+ 
Sbjct: 175 ----RTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDI 230

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           VTYN  +        +D AIE ++ +   ++G  P + SY  ++  LC A R  +A + +
Sbjct: 231 VTYNVVVNGICQEGRVDDAIEFLKNLP--SYGCEPNTVSYNIVLKGLCTAERWEDAEELM 288

Query: 382 AELVDGGSVPREYTYKLV 399
            E+   G  P   T+ ++
Sbjct: 289 GEMGQKGCPPNVVTFNML 306


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 131/251 (52%), Gaps = 18/251 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL +M R+G    V T ++  LI  L  +GL+  A+    +M Q  C P+  +YN +++A
Sbjct: 339 FLAEMIRKGCSPSVVTFNI--LINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHA 396

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+     +A   L+ M   G  C PD+ TY  L+++ CK G           ++  A  
Sbjct: 397 LCKDKKMERAIEYLDIMVSRG--CYPDIVTYNTLLTALCKDG-----------KVDVAVE 443

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +   +  KG  P ++ YN +IDG  K  + + A++L D+M  KG  P+ +TY++ +   S
Sbjct: 444 ILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLS 503

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
              ++D+AI     ++ +  GV P + +Y  I+  LC+A + + A DFLA +V  G  P 
Sbjct: 504 REGKVDEAIAFFHDLEEM--GVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPT 561

Query: 393 EYTYKLVCDAL 403
           E +Y ++ + L
Sbjct: 562 ETSYMILIEGL 572



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 144/302 (47%), Gaps = 39/302 (12%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           E TCKE G+    G  +K     L +M  +G    V T +V  LI  + +EG ++EA+  
Sbjct: 255 EATCKESGV----GQAMK----LLDEMRDKGCKPDVVTYNV--LINGICKEGRLDEAIRF 304

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              M  + C+P+V  +N+++ ++C  G +  A   L +M   G  C P V T+ ILI+  
Sbjct: 305 LNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKG--CSPSVVTFNILINFL 362

Query: 252 CKYGM------------QTGCRK------------AIRRRIWEANHLFRLMLFKGFVPDV 287
           C+ G+            Q GC                 +++  A     +M+ +G  PD+
Sbjct: 363 CRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDI 422

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V YN L+   CK  +++ A+E+ + +  KGC P  +TYN+ I   S V + D AI+++ +
Sbjct: 423 VTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDE 482

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           M+    G+ P   +Y+ ++  L   G+V EA  F  +L + G  P   TY  +   L  A
Sbjct: 483 MK--GKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKA 540

Query: 407 EE 408
            +
Sbjct: 541 RQ 542



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 127/263 (48%), Gaps = 21/263 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R   ++  + FL+DM  RG  ++    + T LI+ L + G   +A      ++     
Sbjct: 120 LVRNGELEEGFKFLEDMVCRG--DIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAV 177

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  YNV+I+  C+ G    A  LL++M +      PDV TY  ++ + C  G      
Sbjct: 178 PDVITYNVLISGYCKTGEIGSALQLLDRMSVS-----PDVVTYNTILRTLCDSG------ 226

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  +    + +   PDV+ Y  LI+  CK   + +A++L D+M  KGC P+
Sbjct: 227 -----KLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPD 281

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            VTYN  I        +D+AI  +  M   ++G  P   ++  I+ ++C  GR ++A  F
Sbjct: 282 VVTYNVLINGICKEGRLDEAIRFLNHMP--SYGCQPNVITHNIILRSMCSTGRWMDAEKF 339

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           LAE++  G  P   T+ ++ + L
Sbjct: 340 LAEMIRKGCSPSVVTFNILINFL 362



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 6/104 (5%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            L +M  +G   +++T S+   L+  L  EG V+EA+A F+ +++   +P+   YN ++ 
Sbjct: 479 LLDEMKGKGLKPDIITYST---LVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIML 535

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
            LC+     +A   L  M   G  C P   +Y ILI      G+
Sbjct: 536 GLCKARQTVRAIDFLAYMVARG--CKPTETSYMILIEGLAYEGL 577


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 134/274 (48%), Gaps = 51/274 (18%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EA      M +   +PDV+ YN +++  C V   NKA+ +   +   G    P++++Y+I
Sbjct: 300 EAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVN--PNIHSYSI 357

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           +I  +CK            +++ EA +LF+ M     +PDVV YN LIDG CK  +I  A
Sbjct: 358 MIHGFCKI-----------KKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYA 406

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
           L+L D+M+ +G   +++TYNS +      +++DKAI ++ KM+  + G+ P   +YT ++
Sbjct: 407 LKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMK--DEGIQPDICTYTTLV 464

Query: 366 HALCEAGRVLEAR-----------------------------------DFLAELVDGGSV 390
             LC+ GR+ +AR                                   D L+++ + G +
Sbjct: 465 DGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCI 524

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           P   TY+++  +L   +E    +  LR+ I  G+
Sbjct: 525 PNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 115/234 (49%), Gaps = 16/234 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L + G  + AL    R+     +P+V  YN +I+++C+V   N+A  L  +M
Sbjct: 179 SYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 238

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PDV TY  LIS +C  G           ++ +A  LF  M+F+   P+V  +
Sbjct: 239 VSKGIS--PDVVTYNALISGFCIVG-----------KMKDATDLFNKMIFENINPNVYTF 285

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L+DG CK  R++ A  +   M K+G  P+  TYNS +  Y +V E++KA  +   +  
Sbjct: 286 NILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTIS- 344

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              GV P   SY+ +IH  C+  +V EA +   E+     +P   TY  + D L
Sbjct: 345 -QRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGL 397



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 101/204 (49%), Gaps = 14/204 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+EA+  F  M      PDV  YN +I+ LC++G  + A  L+++M   G   P D  TY
Sbjct: 368 VDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG--VPHDKITY 425

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             ++ + CK             ++ +A  L   M  +G  PD+  Y  L+DG CK  R+E
Sbjct: 426 NSILDALCK-----------NHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLE 474

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  +F+D+  KG I +   Y + I+ +      D++++++ KM+  N  +P + +Y  I
Sbjct: 475 DARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEE-NGCIPNAVTYEII 533

Query: 365 IHALCEAGRVLEARDFLAELVDGG 388
           I +L +     +A   L E++  G
Sbjct: 534 ICSLFDKDENDKAEKLLREMITRG 557



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 93/184 (50%), Gaps = 16/184 (8%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           ++VT +S   LI  L + G ++ AL     M       D   YN +++ALC+    +KA 
Sbjct: 386 DVVTYNS---LIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAI 442

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            LL +M+  G +  PD+ TYT L+   CK G           R+ +A  +F  +L KG++
Sbjct: 443 ALLTKMKDEGIQ--PDICTYTTLVDGLCKNG-----------RLEDARIVFEDLLVKGYI 489

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
            DV  Y  +I G C     + +L+L   M + GCIPN VTY   I      +E DKA ++
Sbjct: 490 LDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKL 549

Query: 345 MRKM 348
           +R+M
Sbjct: 550 LREM 553



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 97/209 (46%), Gaps = 15/209 (7%)

Query: 189 LATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           +++F R+  Q   +P ++ +  ++ +L +  +++    L  QME  G     D+   +IL
Sbjct: 56  VSSFNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGI--TSDLVILSIL 113

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I+ + + G Q     ++  +I +           G+ P+V+    LI G C   +I +AL
Sbjct: 114 INCFSQLG-QNPLSFSVLAKILKM----------GYEPNVITLTTLIKGLCLKGQIHQAL 162

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           +  D +   G   N+V+Y + I     V +   A++++R++       P    Y  II +
Sbjct: 163 QFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDG-KLVQPNVVMYNTIIDS 221

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +C+   V EA D  +E+V  G  P   TY
Sbjct: 222 MCKVKLVNEAFDLYSEMVSKGISPDVVTY 250


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 124/257 (48%), Gaps = 18/257 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +F R   +    ++L++M  R  G +      T +I      GL+ EAL     M  F C
Sbjct: 308 LFTRRGEMDHAAEYLREM--REFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGC 365

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PDV  YN ++N LC+    + A  LL +M+  G   PPD+ T+T LI  YC+ G     
Sbjct: 366 LPDVVTYNTLLNGLCKERRLSDAEELLNEMKERG--VPPDLCTFTTLIHGYCRDG----- 418

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  I +A   F  +  +   PD+V YN LIDG C+   + +A EL+DDM+ +   P
Sbjct: 419 ------NIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFP 472

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARD 379
           N VTY+  I  +    ++D A   + +M  +N G VP   +Y  II   C +G V + + 
Sbjct: 473 NHVTYSILIDSHCEKGQVDNAFAFLDEM--VNKGIVPNIMTYNSIIKGYCRSGNVSKGQQ 530

Query: 380 FLAELVDGGSVPREYTY 396
           FL ++     +P   TY
Sbjct: 531 FLPKMRHDKVMPDLITY 547



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 121/258 (46%), Gaps = 16/258 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F R   ++    F K+M  RG        S +CLI +    G ++ A      M++F   
Sbjct: 274 FCRAGELEEALRFYKEM--RGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLM 331

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   Y +VI   CR G   +A  L  + E+  F C PDV TY  L++  CK        
Sbjct: 332 PDGVIYTMVIGGFCRAGLMLEA--LRVRDEMVAFGCLPDVVTYNTLLNGLCK-------- 381

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               RR+ +A  L   M  +G  PD+  +  LI G C+   IE+AL+ FD ++ +   P+
Sbjct: 382 ---ERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPD 438

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VTYN+ I       ++ KA E+   M +     P   +Y+ +I + CE G+V  A  FL
Sbjct: 439 IVTYNTLIDGMCRQGDLGKANELWDDMHS-REIFPNHVTYSILIDSHCEKGQVDNAFAFL 497

Query: 382 AELVDGGSVPREYTYKLV 399
            E+V+ G VP   TY  +
Sbjct: 498 DEMVNKGIVPNIMTYNSI 515



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 126/270 (46%), Gaps = 20/270 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L +M  RG    + T   T LI     +G + +AL  F  +   R RPD+  YN +I+
Sbjct: 390 ELLNEMKERGVPPDLCT--FTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLID 447

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            +CR G+  KA  L + M        P+  TY+ILI S+C+ G           ++  A 
Sbjct: 448 GMCRQGDLGKANELWDDMH--SREIFPNHVTYSILIDSHCEKG-----------QVDNAF 494

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
                M+ KG VP+++ YN +I G C++  + +  +    M     +P+ +TYN+ I  Y
Sbjct: 495 AFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGY 554

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               ++ +A  +++ M+N N   P + +Y  II      G + EA     ++   G  P 
Sbjct: 555 VKEGKMHEAFNLLKIMENENVQ-PDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPD 613

Query: 393 EYTYKLVCD----ALNAAEEPSLLDDGLRK 418
            YTY  + +    A N+ +   L D+ L+K
Sbjct: 614 RYTYMSMINGHVVAGNSKKSFQLHDEMLQK 643



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 14/202 (6%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  +NV+++A  R G+   A  L++ M   G +  P + TY  ++    + G      
Sbjct: 192 PDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIK--PGLVTYNSVLKGLLRNG------ 243

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R  +A  +FR M   G  PDV ++N LI G C+   +E AL  + +M  +   P+
Sbjct: 244 -----RWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPD 298

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            V+++  I  ++   E+D A E +R+M+     +P    YT +I   C AG +LEA    
Sbjct: 299 VVSFSCLIGLFTRRGEMDHAAEYLREMREFGL-MPDGVIYTMVIGGFCRAGLMLEALRVR 357

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+V  G +P   TY  + + L
Sbjct: 358 DEMVAFGCLPDVVTYNTLLNGL 379



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 16/210 (7%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           L KA E +  +    + F N +T   +         V   + FL +M  +G    + T +
Sbjct: 455 LGKANELWDDMHSR-EIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYN 513

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              +IK     G V++      +M+  +  PD+  YN +I+   + G  ++A  LL+ ME
Sbjct: 514 --SIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIME 571

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
               +  PD  TY ++IS +  +G            + EA+ +++ M  +G  PD   Y 
Sbjct: 572 NENVQ--PDAVTYNMIISGFSVHG-----------NMQEADWVYKKMGARGIEPDRYTYM 618

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPN 321
            +I+G       +++ +L D+M +KG  P+
Sbjct: 619 SMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 53/146 (36%), Gaps = 38/146 (26%)

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYR-------------------------------- 302
           +RL+L      +    N ++   CKT +                                
Sbjct: 147 YRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFR 206

Query: 303 ---IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTS 358
              +E A+ L D M  KG  P  VTYNS ++        DKA E+ R M     GV P  
Sbjct: 207 AGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDAC--GVAPDV 264

Query: 359 SSYTPIIHALCEAGRVLEARDFLAEL 384
            S+  +I   C AG + EA  F  E+
Sbjct: 265 RSFNMLIGGFCRAGELEEALRFYKEM 290


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 132/271 (48%), Gaps = 32/271 (11%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           ++++ + ++VT S++     ++G+   + EA   F  M      PD Y +N++++ALC+ 
Sbjct: 235 IAKKISPDVVTFSALIYGFCIVGQ---LEEAFGLFREMVLKNINPDYYTFNILVDALCKE 291

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR------------ 265
           GN   A+ +L  M   G    P+V TY+ L+  YC        +  +             
Sbjct: 292 GNLKGAKNMLVVMMKEGVM--PNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAH 349

Query: 266 ------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                       + + EA  LF  M FKG  PD V YN LIDG CK+ RI  A EL D+M
Sbjct: 350 SYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEM 409

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
           +  G   N  TYN  I      + +D+AI +++K++  + G+ P   ++  +I+ LC+ G
Sbjct: 410 HDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIK--DQGIQPDMYTFNILIYGLCKVG 467

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           R+  A+D   +L+  G     +TY ++ + L
Sbjct: 468 RLKNAQDVFQDLLSKGYSVNAWTYNIMVNGL 498



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 14/233 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L + G    AL    ++     + +V  YN +I++LC+      A  L  QM
Sbjct: 175 SYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQM 234

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                +  PDV T++ LI  +C  G           ++ EA  LFR M+ K   PD   +
Sbjct: 235 IAK--KISPDVVTFSALIYGFCIVG-----------QLEEAFGLFREMVLKNINPDYYTF 281

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L+D  CK   ++ A  +   M K+G +PN VTY+S +  Y +VN+++KA  ++  +  
Sbjct: 282 NILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQ 341

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +    P + SY  +I+  C+   V EA     ++   G  P + TY  + D L
Sbjct: 342 MG-AAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGL 393



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 19/215 (8%)

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           +V+EAL+ F  M+     PD   YN +I+ LC+ G  + A  L+++M   G   P +++T
Sbjct: 363 MVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNG--QPANIFT 420

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           Y  LI + CK              + +A  L + +  +G  PD+  +N LI G CK  R+
Sbjct: 421 YNCLIDALCK-----------NHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRL 469

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           + A ++F D+  KG   N  TYN  +         D+A  ++ KM + N  +P + +Y  
Sbjct: 470 KNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDD-NGIIPDAVTYET 528

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           +I AL       +A   L E+     + R+  Y L
Sbjct: 529 LIQALFHKDENEKAEKLLREM-----IARDVVYAL 558



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 103/208 (49%), Gaps = 17/208 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNG-ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F +   V        DM  +G   + VT +S   LI  L + G ++ A      M     
Sbjct: 358 FCKIKMVDEALSLFNDMQFKGIAPDKVTYNS---LIDGLCKSGRISYAWELVDEMHDNGQ 414

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
             +++ YN +I+ALC+  + ++A  L+++++  G +  PD+YT+ ILI   CK G     
Sbjct: 415 PANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQ--PDMYTFNILIYGLCKVG----- 467

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +F+ +L KG+  +   YN +++G CK    + A  L   M+  G IP
Sbjct: 468 ------RLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIP 521

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           + VTY + I+     +E +KA +++R+M
Sbjct: 522 DAVTYETLIQALFHKDENEKAEKLLREM 549



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 99/218 (45%), Gaps = 22/218 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN--FNKARFLLEQMELPGFRCPPDVY 242
           V+  +++F  + + +    +  +N ++ +L +  N  +  A  L  ++E  G    PD++
Sbjct: 47  VDNVVSSFNHLLRTKPTSSIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGI--TPDIF 104

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM---LFKGFVPDVVAYNCLIDGCCK 299
           T+ ILI+ YC               + E N  F +M   L  G+ PD + +N LI G C 
Sbjct: 105 TFNILINCYC--------------HMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCL 150

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             +++ AL   D +   G   ++ +Y + I     + E   A++M+RK+      +    
Sbjct: 151 NGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINV-V 209

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            Y  II +LC+   V++A +  ++++     P   T+ 
Sbjct: 210 MYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFS 247



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 6/136 (4%)

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           G  P+  T+N  I  Y  + E++ A  MM K+  + +  P + ++  +I  LC  G+V E
Sbjct: 98  GITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYE-PDTITFNTLIKGLCLNGKVKE 156

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMK--- 433
           A  F   ++  G    +++Y  + + L    E       LRK   DG   +   VM    
Sbjct: 157 ALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRK--IDGKLVKINVVMYNTI 214

Query: 434 VKPIMKHKELLKCGEI 449
           +  + KHK ++   E+
Sbjct: 215 IDSLCKHKLVIDAYEL 230


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 132/280 (47%), Gaps = 22/280 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + +  I  L + G V EAL  F  +K+    PDV+ Y+ +I+  C+ G   KA
Sbjct: 320 GVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKA 379

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L ++M L G    P+++ Y  L+   CK G            I  A  LF  M  KG 
Sbjct: 380 FELHDEMCLKGI--APNIFIYNALVDGLCKSG-----------DIQRARKLFDGMPEKGL 426

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PD V Y+ +IDG CK+  +  A  LF +M  KG  P+   YN+ +       +++KA+ 
Sbjct: 427 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 486

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD-- 401
           + R+M  L  G  T+ S+  +I   C++ ++ EA     E++    +P   TY  V D  
Sbjct: 487 LFREM--LQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWH 544

Query: 402 -ALNAAEEPSLLDDGLRKR--IRDGIEYRFRQVMK--VKP 436
                 EE +LL   +++R  I D +   F +++   VKP
Sbjct: 545 CKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKP 584



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 108/217 (49%), Gaps = 16/217 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    + G + EAL+ F  +      PDV   +  I+ L + G   +A  +  +++ 
Sbjct: 294 TVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE 353

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PDV+TY+ LIS +CK G            + +A  L   M  KG  P++  YN 
Sbjct: 354 KGL--VPDVFTYSSLISGFCKQG-----------EVEKAFELHDEMCLKGIAPNIFIYNA 400

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG CK+  I+RA +LFD M +KG  P+ VTY++ I  Y     + +A  +  +M   +
Sbjct: 401 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMP--S 458

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            GV P S  Y  ++H  C+ G + +A +   E++  G
Sbjct: 459 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 495



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 133/288 (46%), Gaps = 51/288 (17%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI    ++G V +A      M      P+++ YN +++ LC+ G+  +AR L + M  
Sbjct: 364 SSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPE 423

Query: 233 PGFRCPPDVYTYTILISSYCKY----------------GMQT----------GCRKAIRR 266
            G    PD  TY+ +I  YCK                 G+Q           GC K    
Sbjct: 424 KGLE--PDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCK--EG 479

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            + +A +LFR ML KGF    +++N LIDG CK+ +I+ A +LF +M  K  +P+ VTY 
Sbjct: 480 DMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYT 538

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLN---------------HGV-PTSSSYTPIIHALCE 370
           + I ++    ++++A  + ++MQ  N                GV P   +Y  +I+A C+
Sbjct: 539 TVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCK 598

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDD 414
              ++EA     E+V  G + +   + L+  AL    +  E   LLD+
Sbjct: 599 EDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDE 646



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 17/229 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +NEA  TF  M++   +PD  A + +I+   R G+ ++   + + M   G   P ++ TY
Sbjct: 26  MNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGI--PINLITY 83

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            +LI   CK+G           ++ +A  + + M+  G  P+   +  LI+G C+ + + 
Sbjct: 84  NVLIHGLCKFG-----------KMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMG 132

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           RALEL D+M K+  +P+ V+Y + I       ++  A +++ KM   +   P    Y+ +
Sbjct: 133 RALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKM-TFSGLKPNVVVYSTL 191

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA---EEPS 410
           I      GR+ EAR  L  +   G  P  + Y  +   L+ A   EE S
Sbjct: 192 IMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 240



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 30/218 (13%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           +GE+GLV                P+ Y Y ++   LCR    N+A+   E+M+  G +  
Sbjct: 1   MGEKGLV----------------PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLK-- 42

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD    + LI  + + G            I E   +  +M+  G   +++ YN LI G C
Sbjct: 43  PDYNACSALIDGFMREG-----------DIDEVLRIKDVMVSCGIPINLITYNVLIHGLC 91

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K  ++E+A E+   M   GC PN  T+   I  Y   + + +A+E++ +M+  N  VP++
Sbjct: 92  KFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNL-VPSA 150

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            SY  +I+ LC    +  A   L ++   G  P    Y
Sbjct: 151 VSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVY 188



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 14/196 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P+V  Y+ +I      G   +AR LL+ M   G    PD++ Y  +IS   K G     
Sbjct: 182 KPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGV--APDIFCYNAIISCLSKAG----- 234

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA+     +  +G  PD V +   I G  KT ++  A + FD+M   G +P
Sbjct: 235 ------KMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 288

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N   Y   I  +     + +A+ + R +  L   +P   + +  IH L + GRV EA   
Sbjct: 289 NNPLYTVLINGHFKAGNLMEALSIFRHLHALGV-LPDVQTCSAFIHGLLKNGRVQEALKV 347

Query: 381 LAELVDGGSVPREYTY 396
            +EL + G VP  +TY
Sbjct: 348 FSELKEKGLVPDVFTY 363



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 112/258 (43%), Gaps = 29/258 (11%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           ++ + LI     EG ++E L     M       ++  YNV+I+ LC+ G   KA  +L+ 
Sbjct: 46  NACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKG 105

Query: 230 MELPGFRCPPDVYTYTILISSYCK---YGMQTGCRKAIRRR------------------- 267
           M   G  C P+  T+ +LI  YC+    G        + +R                   
Sbjct: 106 MITLG--CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHC 163

Query: 268 --IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             +  AN L   M F G  P+VV Y+ LI G     RIE A  L D M+  G  P+   Y
Sbjct: 164 KDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCY 223

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           N+ I   S   ++++A   + ++Q    G+ P + ++   I    + G++ EA  +  E+
Sbjct: 224 NAIISCLSKAGKMEEASTYLLEIQ--GRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEM 281

Query: 385 VDGGSVPREYTYKLVCDA 402
           +D G +P    Y ++ + 
Sbjct: 282 LDHGLMPNNPLYTVLING 299



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 101/249 (40%), Gaps = 39/249 (15%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF--------- 235
           V EA + F+ M     +P  + YN +++  C+ G+  KA  L  +M   GF         
Sbjct: 446 VAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTL 505

Query: 236 -----------------------RCPPDVYTYTILISSYCKYGMQTGCR---KAIRRRIW 269
                                  +  PD  TYT +I  +CK G         K ++ R  
Sbjct: 506 IDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 565

Query: 270 EANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
             + +F L   M+ KG  PD V Y  +I   CK   +  A +L D++  KG +     ++
Sbjct: 566 IVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHD 625

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             I       ++ +A +++ +M  L    P+ ++ + ++ +  EAG++ EA      +  
Sbjct: 626 LLITALCKREDLTEASKLLDEMGELGLK-PSLAACSTLVRSFHEAGKMDEATRVFEGVKS 684

Query: 387 GGSVPREYT 395
            G VP   T
Sbjct: 685 LGLVPDTTT 693



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           KG VP+   Y  +  G C+  R+  A   F++M K G  P+    ++ I  +    +ID+
Sbjct: 4   KGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDE 63

Query: 341 AIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            + +   M  ++ G+P +  +Y  +IH LC+ G++ +A + L  ++  G  P   T+ L+
Sbjct: 64  VLRIKDVM--VSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLL 121

Query: 400 ----CDALNAAEEPSLLDDGLRKR 419
               C   N      LLD+ + KR
Sbjct: 122 IEGYCREHNMGRALELLDE-MEKR 144


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 125/258 (48%), Gaps = 16/258 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V  + + L+ M  RG    V T   T +I    +EGL++EA+     M    C+
Sbjct: 377 FCQNGLVDRVIELLEQMLERGCMPDVIT--YTTVINGFCKEGLIDEAVMLLKSMTACGCK 434

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+  +Y +V+  LC    +  A  L+ QM   G  CP +  T+  LI+  CK G+     
Sbjct: 435 PNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG--CPLNPITFNTLINFLCKKGL----- 487

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + +A  L + ML  G  PD+++Y+ +IDG  K  + + ALEL + M  KG  PN
Sbjct: 488 ------VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPN 541

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            + Y+S     S    I+K I+M   +Q+       +  Y  +I +LC+ G    A +FL
Sbjct: 542 TIIYSSIASALSREGRINKVIQMFDNIQDTTIR-SDAVLYNAVISSLCKRGETERAIEFL 600

Query: 382 AELVDGGSVPREYTYKLV 399
           A +V  G VP E TY ++
Sbjct: 601 AYMVSSGCVPNESTYTIL 618



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 129/304 (42%), Gaps = 64/304 (21%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           RG   +     L+D+  RG    +   +   ++  + ++G V+EAL     +  F C PD
Sbjct: 169 RGGGFRSAVRVLEDLHARGCA--LDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPD 226

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------- 256
           V +YN V+  LC    +   + L+E+M      CPP++ T+  LIS  C+ G+       
Sbjct: 227 VVSYNAVLKGLCMAKRWGCVQELMEEMVR--MACPPNIVTFNTLISYLCRNGLFERVHEV 284

Query: 257 -----QTGCRKAIRR------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
                + GC   IR              +  A+ +   M   G  P+VV YN L+ G C 
Sbjct: 285 LAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCS 344

Query: 300 TYR-----------------------------------IERALELFDDMNKKGCIPNRVT 324
             R                                   ++R +EL + M ++GC+P+ +T
Sbjct: 345 AERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVIT 404

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y + I  +     ID+A+ +++ M       P + SYT ++  LC A R ++A D ++++
Sbjct: 405 YTTVINGFCKEGLIDEAVMLLKSMTACGCK-PNTISYTIVLKGLCSAERWVDAEDLMSQM 463

Query: 385 VDGG 388
           +  G
Sbjct: 464 IQQG 467



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 14/205 (6%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C  D   +N++++  C+ G  ++   LLEQM   G  C PDV TYT +I+ +CK G+   
Sbjct: 363 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERG--CMPDVITYTTVINGFCKEGL--- 417

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   I EA  L + M   G  P+ ++Y  ++ G C   R   A +L   M ++GC 
Sbjct: 418 --------IDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCP 469

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
            N +T+N+ I +      +++AIE++++M  +N   P   SY+ +I  L +AG+  EA +
Sbjct: 470 LNPITFNTLINFLCKKGLVEQAIELLKQML-VNGCSPDLISYSTVIDGLGKAGKTDEALE 528

Query: 380 FLAELVDGGSVPREYTYKLVCDALN 404
            L  +V+ G  P    Y  +  AL+
Sbjct: 529 LLNVMVNKGMSPNTIIYSSIASALS 553



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 16/234 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++ L   G + +ALA    M +  C P    Y+V++ A CR G F  A  +LE +   G
Sbjct: 128 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 187

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  DV    +++++ C  G            + EA HL R +   G  PDVV+YN ++
Sbjct: 188 --CALDVGNCNLVLNAICDQG-----------SVDEALHLLRDLPSFGCEPDVVSYNAVL 234

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   R     EL ++M +  C PN VT+N+ I Y       ++  E++ +M  + HG
Sbjct: 235 KGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQM--VEHG 292

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
             P    Y  II  +C+ G +  A + L  +   G  P    Y  +   L +AE
Sbjct: 293 CTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAE 346



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 15/178 (8%)

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           Y  +++ YC+ G     R              RL       P+   Y  ++   C   RI
Sbjct: 93  YNAMVAGYCRAGQLESAR--------------RLAAAVPVPPNAYTYFPVVRALCARGRI 138

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
             AL + D+M ++GC P    Y+  +           A+ ++  +      +   +    
Sbjct: 139 ADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNL- 197

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
           +++A+C+ G V EA   L +L   G  P   +Y  V   L  A+    + + + + +R
Sbjct: 198 VLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVR 255


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 179/409 (43%), Gaps = 76/409 (18%)

Query: 87  AYNIANNVLVLGPAAYRDPQKVTLGL--------NKATEFYHWVERFFDFFHNEMTCKEM 138
           A ++   +L LG     +P +VT+G         N+ ++    V++  +  +        
Sbjct: 139 ALSVLGKMLKLG----YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYN 194

Query: 139 GIV--FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196
            I+    +   V    DF K++ R+G    V T   T L+  L   G  N+A      M 
Sbjct: 195 AIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVT--YTALVNGLCNSGRWNDAARLLRDMI 252

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
           + +  P+V  Y+ +++A  + G   +A+ + E+M        PD+ TY+ LI+  C    
Sbjct: 253 KRKITPNVITYSALLDAFVKNGKVLEAKEIFEEM--VRMSIDPDIVTYSSLINGLC---- 306

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                  +  RI EAN +F LM+ KG  PDVV+YN LI+G CK  R+E  ++LF  M+++
Sbjct: 307 -------LHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQR 359

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL-----------------NHGVPTSS 359
           G + N VTYN+ I+ +  V ++DKA E   +M +                  ++G+   +
Sbjct: 360 GLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKA 419

Query: 360 -----------------SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
                            +YT +I  +C+ G+V +A      L   G  P   TY  +   
Sbjct: 420 LVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSG 479

Query: 403 LNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLKCGEIDI 451
           L              K ++  +E  + + MK + +MK+  +L  G+ DI
Sbjct: 480 L------------CTKGLQHEVEALYTK-MKQEGLMKNDSMLCLGDGDI 515



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 14/210 (6%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M+    R D+Y +N+VIN  C     + A  +L +M   G+   PD  T   L++ +C+
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYE--PDRVTIGSLVNGFCR 167

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                      R R+ +A  L   M+  G+ PD+VAYN +ID  CKT R+  AL+ F ++
Sbjct: 168 -----------RNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEI 216

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            +KG  PN VTY + +         + A  ++R M       P   +Y+ ++ A  + G+
Sbjct: 217 GRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIK-RKITPNVITYSALLDAFVKNGK 275

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           VLEA++   E+V     P   TY  + + L
Sbjct: 276 VLEAKEIFEEMVRMSIDPDIVTYSSLINGL 305



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 121/304 (39%), Gaps = 44/304 (14%)

Query: 150 GLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           G W+     L+DM +R     V T S   L+    + G V EA   F  M +    PD+ 
Sbjct: 239 GRWNDAARLLRDMIKRKITPNVITYSA--LLDAFVKNGKVLEAKEIFEEMVRMSIDPDIV 296

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            Y+ +IN LC     ++A  + + M   G  C PDV +Y  LI+ +CK        K  R
Sbjct: 297 TYSSLINGLCLHDRIDEANQMFDLMVSKG--CFPDVVSYNTLINGFCKAKRVEDGMKLFR 354

Query: 266 R------------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
           +                         + +A   F  M   G  PD+  YN L+ G C   
Sbjct: 355 KMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNG 414

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
            +E+AL +F+DM K     + VTY + I+      +++ A  +   + +L    P   +Y
Sbjct: 415 LLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSL-SLKGLKPDIVTY 473

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPRE-----------YTYKLVCDALNAAEEPS 410
           T ++  LC  G   E      ++   G +  +            + +L+   L+    PS
Sbjct: 474 TTMMSGLCTKGLQHEVEALYTKMKQEGLMKNDSMLCLGDGDITISAELIKKMLSCGYAPS 533

Query: 411 LLDD 414
           LL D
Sbjct: 534 LLGD 537



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G   D+  +N +I+  C  +++  AL +   M K G  P+RVT  S +  +   N +  A
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL--- 398
           + ++ KM  + +  P   +Y  II +LC+  RV +A DF  E+   G  P   TY     
Sbjct: 175 VSLVDKMVEIGYR-PDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVN 233

Query: 399 -VCDALNAAEEPSLLDDGLRKRI 420
            +C++    +   LL D ++++I
Sbjct: 234 GLCNSGRWNDAARLLRDMIKRKI 256


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 121/267 (45%), Gaps = 29/267 (10%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+G      +   LIK     G++++A+  F  M+    +P+V  Y  VI ALCR+G  +
Sbjct: 387 GDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMD 446

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------------- 266
            A     QM   G    PD Y Y  LI  +C +G     ++ I                 
Sbjct: 447 DAMEKFNQMIDQGV--APDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSS 504

Query: 267 ---------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    R+ +A ++F L +  G  P  V Y+ L+DG C   ++E+AL +FD M   G
Sbjct: 505 IINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 564

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLE 376
             PN V Y + +  Y  +  ID+ + + R+M  L  G+ P++  Y  II  L EAGR + 
Sbjct: 565 IEPNDVVYGTLVNGYCKIGRIDEGLSLFREM--LQKGIKPSTILYNIIIDGLFEAGRTVP 622

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A+    E+ + G    + TY +V   L
Sbjct: 623 AKVKFHEMTESGIAMNKCTYSIVLRGL 649



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 13/229 (5%)

Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+K   E    +EAL    +R  +  C PDV++Y++++ +LC  G   +A  LL  M   
Sbjct: 152 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C PDV  Y  +I  + K G            + +A  LF+ M+ +G  PD V Y+ +
Sbjct: 212 GAVCSPDVVAYNTVIDGFFKEG-----------DVNKACDLFKEMVQRGIPPDFVTYSSV 260

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +   CK   +++A      M  KG +PN  TYN+ I  YS   +  +A+ + ++M+    
Sbjct: 261 VHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR-QS 319

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +P   ++  ++ +LC+ G++ EARD    +   G  P  ++Y ++ + 
Sbjct: 320 ILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNG 368



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 126/257 (49%), Gaps = 20/257 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F +  +V    D  K+M +RG   + VT SSV   +  L +   +++A A   +M     
Sbjct: 229 FFKEGDVNKACDLFKEMVQRGIPPDFVTYSSV---VHALCKARAMDKAEAFLRQMVNKGV 285

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+ + YN +I      G + +A  + ++M        PDV T+ +L+ S CKYG     
Sbjct: 286 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSIL--PDVVTFNMLMGSLCKYG----- 338

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 +I EA  +F  M  KG  PDV +YN +++G      +    +LFD M   G  P
Sbjct: 339 ------KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 392

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
              T+N  I+ Y+    +DKA+ +  +M+  +HGV P   +YT +I ALC  G++ +A +
Sbjct: 393 VICTFNVLIKAYANCGMLDKAMIIFNEMR--DHGVKPNVLTYTTVIAALCRIGKMDDAME 450

Query: 380 FLAELVDGGSVPREYTY 396
              +++D G  P +Y Y
Sbjct: 451 KFNQMIDQGVAPDKYAY 467



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 17/219 (7%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           ALA F ++ +   R D+   N ++   C     ++A  +L     P   C PDV++Y+IL
Sbjct: 130 ALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLH-RTPELGCVPDVFSYSIL 188

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV--PDVVAYNCLIDGCCKTYRIER 305
           + S C  G           +  +A+ L R+M   G V  PDVVAYN +IDG  K   + +
Sbjct: 189 LKSLCDQG-----------KSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNK 237

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPI 364
           A +LF +M ++G  P+ VTY+S +        +DKA   +R+M  +N GV P + +Y  +
Sbjct: 238 ACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQM--VNKGVLPNNWTYNNL 295

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           I+     G+  EA     E+     +P   T+ ++  +L
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSL 334



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 29/292 (9%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG  +     + +I  L + G V +A   F         P    Y+++++  C VG   K
Sbjct: 493 NGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEK 552

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  + + M   G   P DV  Y  L++ YCK G           RI E   LFR ML KG
Sbjct: 553 ALRVFDAMVSAGIE-PNDV-VYGTLVNGYCKIG-----------RIDEGLSLFREMLQKG 599

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P  + YN +IDG  +  R   A   F +M + G   N+ TY+  +R        D+AI
Sbjct: 600 IKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAI 659

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            + ++++ +N  +   +  T +I  + +  RV EA+D  A +   G VP   TY ++   
Sbjct: 660 FLFKELRAMNVKIDIITLNT-MIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMI-- 716

Query: 403 LNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKP---IMKH--KELLKCGEI 449
                  +L+ +GL +   D   +   Q    +P   ++ H  +ELLK  EI
Sbjct: 717 ------TNLIKEGLVEEAED--MFSSMQNAGCEPDSRLLNHVVRELLKKNEI 760



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 76/178 (42%), Gaps = 13/178 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L E G    A   F+ M +     +   Y++V+  L +   F++A FL +  EL  
Sbjct: 610 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFK--ELRA 667

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                D+ T   +I+       QT       RR+ EA  LF  +   G VP VV Y+ +I
Sbjct: 668 MNVKIDIITLNTMIAGM----FQT-------RRVEEAKDLFASISRSGLVPCVVTYSIMI 716

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
               K   +E A ++F  M   GC P+    N  +R     NEI +A   + K+   N
Sbjct: 717 TNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERN 774



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 13/188 (6%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P  +TY IL+           C +A R  +  A   F  +L  G   D++  N L+ G C
Sbjct: 109 PTSHTYAILMDC---------CTRAHRPELALA--FFGQLLRTGLRVDIIIANHLLKGFC 157

Query: 299 KTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-P 356
           +  R + AL+ L     + GC+P+  +Y+  ++      +  +A +++R M        P
Sbjct: 158 EAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSP 217

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              +Y  +I    + G V +A D   E+V  G  P   TY  V  AL  A      +  L
Sbjct: 218 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFL 277

Query: 417 RKRIRDGI 424
           R+ +  G+
Sbjct: 278 RQMVNKGV 285


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 22/259 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
           F +  NV    D  ++M   G    V+   VTC  L+  L E G + +AL  F   ++ +
Sbjct: 241 FCQVGNVNVAQDLFQEMISNG----VSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSK 296

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
              D    N++IN +C+    ++A  L   + + G     DV TY ILI  + K G    
Sbjct: 297 MDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVE--TDVVTYNILIGVFVKEG---- 350

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                      A  ++  ML KG +P  V YN ++DG CK  R+E A ++ D M  +GC 
Sbjct: 351 -------NFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCS 403

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEAR 378
           P+ VT+++ I+ Y     +D  +E+  +M     G V  + +Y  +IH  C+ G +  A+
Sbjct: 404 PDVVTFSTLIKGYCKAGRVDDGLELFSEM--CQRGLVADTITYNALIHGFCKVGDLNGAQ 461

Query: 379 DFLAELVDGGSVPREYTYK 397
           D   E+V  G  P   T++
Sbjct: 462 DIFEEMVSSGVCPDTITFR 480



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 14/232 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L+  L  EG V +ALA   RM +   +PD   Y  ++N +C++G+   A  +L +M
Sbjct: 12  TFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKM 71

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +    +   +V  Y+ ++   CK G              +A ++F  M  KG  P+V+ Y
Sbjct: 72  DESQIK--ANVVIYSAIVDRLCKDGNHI-----------KAQNIFTEMHEKGIFPNVLTY 118

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           NC+IDG C   +   A +L  DM ++   P+ VT+++ I  +    ++  A E+ R+M  
Sbjct: 119 NCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLR 178

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            N   PT+ +Y+ +I   C+  R+ +A+     +V  G  P   T   + D 
Sbjct: 179 RNI-FPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDG 229



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 119/262 (45%), Gaps = 38/262 (14%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + ++  L ++G   +A   F  M +    P+V  YN +I+  C  G ++ A  LL  M  
Sbjct: 84  SAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIE 143

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGC----RKAIRRRIW------------------- 269
                 PDV T++ LI+++ K G  +G     R+ +RR I+                   
Sbjct: 144 RNI--DPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRL 201

Query: 270 -EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR-----------IERALELFDDMNKKG 317
            +A H+F LM+ KG  PD++  N LIDGCC+  R           +  A +LF +M   G
Sbjct: 202 EDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNG 261

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P+ VT N+ +       +++KA+EM +  Q     + T++    II+ +C+  +V EA
Sbjct: 262 VSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATC-NIIINGMCKGNKVDEA 320

Query: 378 RDFLAELVDGGSVPREYTYKLV 399
            D    L   G      TY ++
Sbjct: 321 WDLFNSLPVNGVETDVVTYNIL 342



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 95/228 (41%), Gaps = 51/228 (22%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           AL    +M + + + +V  Y+ +++ LC+ GN  KA+ +  +M   G    P+V TY  +
Sbjct: 64  ALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIF--PNVLTYNCM 121

Query: 248 ISSYCKYGMQTGCRKAIRR------------------------RIWEANHLFRLMLFKGF 283
           I  YC YG  +   + +R                         ++  A  L+R ML +  
Sbjct: 122 IDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNI 181

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P  + Y+ +IDG CK  R+E A  +FD M  KGC P+ +T N+          ID    
Sbjct: 182 FPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTL---------IDGCCR 232

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
             R +                IH  C+ G V  A+D   E++  G  P
Sbjct: 233 AKRHL----------------IHGFCQVGNVNVAQDLFQEMISNGVSP 264



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 47/202 (23%)

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           CP +V T+T L++  C+ G           R+ +A  L   M+ +G  PD V Y  +++G
Sbjct: 6   CPANVVTFTTLMNGLCREG-----------RVLQALALVDRMVEEGHQPDAVTYGTIVNG 54

Query: 297 CCKTYRIERALEL-----------------------------------FDDMNKKGCIPN 321
            CK      AL +                                   F +M++KG  PN
Sbjct: 55  MCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPN 114

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            +TYN  I  Y    +   A +++R M   N   P   +++ +I+A  + G+V  A +  
Sbjct: 115 VLTYNCMIDGYCSYGKWSDAEQLLRDMIERNID-PDVVTFSALINAFVKEGKVSGAEELY 173

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E++     P   TY  + D  
Sbjct: 174 REMLRRNIFPTTITYSSMIDGF 195



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 1/148 (0%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+  G   +VV +  L++G C+  R+ +AL L D M ++G  P+ VTY + +     + +
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
              A+ M+RKM   +        Y+ I+  LC+ G  ++A++   E+ + G  P   TY 
Sbjct: 61  TVSALNMLRKMDE-SQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYN 119

Query: 398 LVCDALNAAEEPSLLDDGLRKRIRDGIE 425
            + D   +  + S  +  LR  I   I+
Sbjct: 120 CMIDGYCSYGKWSDAEQLLRDMIERNID 147


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 125/262 (47%), Gaps = 20/262 (7%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  N     D  K M + G    V T S   +I  L ++ LVN+A+     M +    P+
Sbjct: 210 KTGNTSMAVDVFKKMEQNGCKPNVVTYST--IIDSLCKDRLVNDAMEFLSEMVERGIPPN 267

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V+ YN +++  C +G  N+A  L ++M   G    P+  T+TIL+   CK GM       
Sbjct: 268 VFTYNSIVHGFCNLGQLNEATRLFKEM--VGRDVMPNTVTFTILVDGLCKEGM------- 318

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + EA  +F  M  KG  PD+  YN L+DG C    +  A ++F+ M +KGC P   
Sbjct: 319 ----VSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAH 374

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           +YN  I  Y     +D+A  ++ +M  + LN   P + +Y+ ++  LC+ GR  EA +  
Sbjct: 375 SYNILINGYCKSRRMDEAKSLLAEMYHKALN---PDTVTYSTLMQGLCQLGRPKEALNLF 431

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+   G  P   TY ++ D  
Sbjct: 432 KEMCSYGPHPNLVTYVILLDGF 453



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 14/262 (5%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G   +  T + T L+  L +EG+V+EA   F  M +    PD+  YN +++  C     N
Sbjct: 296 GRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMN 355

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A+ + E M   G  C P  ++Y ILI+ YCK            RR+ EA  L   M  K
Sbjct: 356 EAKKVFEIMIRKG--CAPGAHSYNILINGYCK-----------SRRMDEAKSLLAEMYHK 402

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
              PD V Y+ L+ G C+  R + AL LF +M   G  PN VTY   +  +     +D+A
Sbjct: 403 ALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEA 462

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           +++++ M+      P    YT +I  +  AG++  A++  ++L   G+ P   TY ++  
Sbjct: 463 LKLLKSMKE-KKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIK 521

Query: 402 ALNAAEEPSLLDDGLRKRIRDG 423
            L          D  RK   DG
Sbjct: 522 GLLKEGLSDEAYDLFRKMEDDG 543



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 16/211 (7%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M  FR   +VY+ N++IN LCR+ + + +  +L +M   G    PD  T+  LI+  C 
Sbjct: 118 QMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIH--PDAITFNALINGLCN 175

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           +I EA  LF  M+ +G  P+V++Y  +I+G CKT     A+++F  M
Sbjct: 176 EG-----------KIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKM 224

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAG 372
            + GC PN VTY++ I        ++ A+E + +M  +  G+P +  +Y  I+H  C  G
Sbjct: 225 EQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEM--VERGIPPNVFTYNSIVHGFCNLG 282

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++ EA     E+V    +P   T+ ++ D L
Sbjct: 283 QLNEATRLFKEMVGRDVMPNTVTFTILVDGL 313



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 33/260 (12%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +   LI  L  EG + EA+  F  M +    P+V +Y  VIN LC+ GN + A  + ++M
Sbjct: 165 TFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKM 224

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------------------------ 266
           E  G  C P+V TY+ +I S CK  +     + +                          
Sbjct: 225 EQNG--CKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLG 282

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++ EA  LF+ M+ +  +P+ V +  L+DG CK   +  A  +F+ M +KG  P+  TYN
Sbjct: 283 QLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYN 342

Query: 327 SFIRYYS---VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           + +  Y    ++NE  K  E+M +        P + SY  +I+  C++ R+ EA+  LAE
Sbjct: 343 ALMDGYCLQRLMNEAKKVFEIMIR----KGCAPGAHSYNILINGYCKSRRMDEAKSLLAE 398

Query: 384 LVDGGSVPREYTYKLVCDAL 403
           +      P   TY  +   L
Sbjct: 399 MYHKALNPDTVTYSTLMQGL 418



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 14/232 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S+  LI  L     V+ +++   +M +    PD   +N +IN LC  G   +A  L  +M
Sbjct: 130 SLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEM 189

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P+V +YT +I+  CK G               A  +F+ M   G  P+VV Y
Sbjct: 190 VKRGHE--PNVISYTTVINGLCKTG-----------NTSMAVDVFKKMEQNGCKPNVVTY 236

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + +ID  CK   +  A+E   +M ++G  PN  TYNS +  +  + ++++A  + ++M  
Sbjct: 237 STIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVG 296

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +  +P + ++T ++  LC+ G V EAR     + + G  P   TY  + D 
Sbjct: 297 RDV-MPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDG 347



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 13/180 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + L++ L + G   EAL  F  M  +   P++  Y ++++  C+ G+ ++A  LL+
Sbjct: 408 TVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLK 467

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M+    +  P++  YTILI      GM       I  ++  A  LF  +   G  PD+ 
Sbjct: 468 SMKEK--KLEPNIVHYTILIE-----GM------FIAGKLEVAKELFSKLFGDGTRPDIR 514

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  +I G  K    + A +LF  M   G +PN  +YN  I+ +    +   AI ++ +M
Sbjct: 515 TYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEM 574



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 16/172 (9%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           + G ++EAL     MK+ +  P++  Y ++I  +   G    A+ L  ++   G R  PD
Sbjct: 455 KHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTR--PD 512

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           + TYT++I    K G+             EA  LFR M   GF+P+  +YN +I G  + 
Sbjct: 513 IRTYTVMIKGLLKEGLSD-----------EAYDLFRKMEDDGFLPNSCSYNVMIQGFLQN 561

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYS---VVNEIDKAIEMMRKMQ 349
                A+ L D+M  K    N  T+   +   S   ++++  +     RKM+
Sbjct: 562 QDSSTAIRLIDEMVGKRFSVNLSTFQMLLDLESQDEIISQFMRGSSQGRKMK 613



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 3/140 (2%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P VV +   +    K  +    + L + M+      N  + N  I     +N +D ++ +
Sbjct: 91  PSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSV 150

Query: 345 MRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + KM  L  G+ P + ++  +I+ LC  G++ EA +   E+V  G  P   +Y  V + L
Sbjct: 151 LGKMFKL--GIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGL 208

Query: 404 NAAEEPSLLDDGLRKRIRDG 423
                 S+  D  +K  ++G
Sbjct: 209 CKTGNTSMAVDVFKKMEQNG 228


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 128/260 (49%), Gaps = 18/260 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +   V    + +++M+ +G    V T ++  ++  L   G V+EA   F++M +  C 
Sbjct: 20  LCKTGKVTEALEMVEEMTEKGVNPDVATYTI--IVDRLCRAGKVDEADELFHKMIERGCS 77

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            +  AYN +IN LC+  N  +A  LLE+M   G+   PD  TY  ++S  C+ G      
Sbjct: 78  ANTVAYNALINGLCKDENIERAYKLLEEMASKGYE--PDNITYNTILSGLCRMG------ 129

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD--DMNKKGCI 319
                ++ EA   F  M  +G+ PDVVAYN L+D   K  ++  A  LF   DM  +   
Sbjct: 130 -----KVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVA 184

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ +TYN+ I  +  V + D+A+++ + +    + +P + +Y  I+  L     + EA +
Sbjct: 185 PDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGY-MPDTVTYNSILLGLARKSNMDEAEE 243

Query: 380 FLAELVDGGSVPREYTYKLV 399
              ++VD G  P   TY +V
Sbjct: 244 MFKKMVDSGCAPNGATYSIV 263



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 142/312 (45%), Gaps = 29/312 (9%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
           F  + + C  +  +  +   V      L++MS+ G    V T ++  L+  L +  LV++
Sbjct: 288 FSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNI--LLDGLCKTNLVDK 345

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A   F  M    C PD+ +Y+VV+N LC+    + AR L ++M     +  PDV T+ IL
Sbjct: 346 AHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRM--IERKLVPDVVTFNIL 403

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           +   CK G           ++ EA  L  +M     +PD V    L+ G C+  R + A+
Sbjct: 404 MDGLCKAG-----------KLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAV 452

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-QNLNHGVPTSSSYTPIIH 366
            LF  M +KG + + + +N  +       ++ +A+   + M ++     P   +YT +++
Sbjct: 453 RLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVN 512

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEY 426
           AL EAGRV +A D+  ++   G  P    Y             + L +GLRK+ R     
Sbjct: 513 ALIEAGRVDQAVDYFQQMTGSGCAPDYVAY-------------NTLMNGLRKQGRHIQAD 559

Query: 427 RFRQVMKVKPIM 438
           R  Q MK K  +
Sbjct: 560 RLTQAMKEKGFL 571



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 16/205 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PDV  Y+ +I+ LC+ G   +A  ++E+M   G    PDV TYTI++   C+ G     
Sbjct: 7   EPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVN--PDVATYTIIVDRLCRAG----- 59

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA+ LF  M+ +G   + VAYN LI+G CK   IERA +L ++M  KG  P
Sbjct: 60  ------KVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEP 113

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + +TYN+ +     + ++ +A +    M +  +  P   +Y  ++ AL + G+V EA   
Sbjct: 114 DNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYS-PDVVAYNGLLDALYKEGKVAEAWGL 172

Query: 381 LA--ELVDGGSVPREYTYKLVCDAL 403
               ++ D    P   TY  + D  
Sbjct: 173 FKTMDMADRKVAPDLITYNTLIDGF 197



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 14/232 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G +  T +   ++  L  +  ++EA   F +M    C P+   Y++V++  CRVGN  + 
Sbjct: 217 GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARC 276

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L E+M    F   PDV     +I   CK            +++ +A+ +   M   G 
Sbjct: 277 LELYEEMTEKRF--SPDVLLCNAVIDMLCK-----------AKKVDDAHKVLEEMSKIGA 323

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           VPDVV YN L+DG CKT  +++A ELF  M   GC P+ V+Y+  +      N++  A  
Sbjct: 324 VPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARV 383

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
           +  +M      VP   ++  ++  LC+AG++ EA+D L  + +   +P   T
Sbjct: 384 LFDRMIE-RKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVT 434



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 3/127 (2%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M  KGF PDVV Y+ +I G CKT ++  ALE+ ++M +KG  P+  TY   +       +
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 338 IDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +D+A E+  KM  +  G   ++ +Y  +I+ LC+   +  A   L E+   G  P   TY
Sbjct: 61  VDEADELFHKM--IERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITY 118

Query: 397 KLVCDAL 403
             +   L
Sbjct: 119 NTILSGL 125



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%)

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415
           P   +Y+ II  LC+ G+V EA + + E+ + G  P   TY ++ D L  A +    D+ 
Sbjct: 8   PDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADEL 67

Query: 416 LRKRIRDG 423
             K I  G
Sbjct: 68  FHKMIERG 75


>gi|356546852|ref|XP_003541836.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15200-like [Glycine max]
          Length = 481

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 170/388 (43%), Gaps = 65/388 (16%)

Query: 32  LAASTTKTQNPFTIESVADVLKSIPRFFFQSPRS-IGRQTGFRHRTPLRQ--RILKKEAY 88
           + AST   Q  F   S  +V  S PRF    P + I     FR   P  Q  R L +  +
Sbjct: 5   IRASTRLHQGIFQTFS-NNVKTSTPRFVHSCPATFIQNLLKFRRDKPTEQLYRALDQCGF 63

Query: 89  NIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFH-NEMTCKEMGIVFARGNN 147
           ++ +++++     +R   +       A  F++W  +    +  +   C E+  +  +   
Sbjct: 64  DLNHDLVLDVLRRHRSDWR------PAHVFFNWASKTTTGYQPSSDVCNEIVDILGKMQR 117

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF--------- 198
            + L   L +MS+R   EL+  +    L++       V+EA+  FYR K+F         
Sbjct: 118 FQELHQVLDEMSKRE--ELLDEAVFATLVRRFVGAHKVDEAIQLFYRRKEFGLELNSEAF 175

Query: 199 --------------------------RCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
                                       R D+  +NV++N  C +GN ++A+ +    ++
Sbjct: 176 RTLLMWLCRYKHVEDAEALFHNSVKKGLRADIKMWNVILNGWCVLGNSHEAKRVWR--DI 233

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
               C PD++TY   I +  K G           ++  A  LFR M  KG  PDVV  NC
Sbjct: 234 VASPCKPDIFTYATFIKALTKKG-----------KLGTALKLFRGMWDKGGKPDVVICNC 282

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +ID  C   RI  ALE+F DM+++GC PN  TYNS I+Y   +  + K  E++ +M+   
Sbjct: 283 IIDALCFKKRIPEALEIFCDMSERGCEPNVATYNSLIKYMCKIQRMKKVYELVDEMERKK 342

Query: 353 HG-VPTSSSYTPIIHALCEAG---RVLE 376
              +P + +Y  ++ +L E G   RVLE
Sbjct: 343 GSCLPNAVTYCYLLKSLKEPGEVCRVLE 370



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 99/251 (39%), Gaps = 59/251 (23%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           +G+WD      + G  ++V  +   C+I  L  +  + EAL  F  M +  C P+V  YN
Sbjct: 266 RGMWD------KGGKPDVVICN---CIIDALCFKKRIPEALEIFCDMSERGCEPNVATYN 316

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
            +I  +C++    K   L+++ME     C P+  TY  L+ S  + G    CR       
Sbjct: 317 SLIKYMCKIQRMKKVYELVDEMERKKGSCLPNAVTYCYLLKSLKEPG--EVCR------- 367

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
                                                   + + M + GC  N   YN  
Sbjct: 368 ----------------------------------------VLERMERNGCGMNDDVYNMV 387

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +R Y   ++ D   +   +M+    G P   SYT +IH   E GRV +A  +L E++  G
Sbjct: 388 LRLYMKWDDGDGVRKTWEEMERNGWG-PDRRSYTIMIHENFEKGRVKDAVRYLEEMISKG 446

Query: 389 SVPREYTYKLV 399
            VP   T KLV
Sbjct: 447 MVPERRTEKLV 457


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 20/262 (7%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           + S  +  ++   +E  V +A+     M+    +PDV  YNV+IN +C+ G  ++A   L
Sbjct: 81  SLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 140

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
             M  P + C P+V T+ I++ S C  G           R  +A  L   ML KG  P V
Sbjct: 141 NNM--PSYGCQPNVITHNIILRSMCSTG-----------RWMDAEKLLSDMLRKGCSPSV 187

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V +N LI+  C+   + RA+++ + M   GC PN ++YN  +  +    ++D+AIE +  
Sbjct: 188 VTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDI 247

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           M  ++ G  P   +Y  ++ ALC+ G+V  A + L +L   G  P   TY  V D L+  
Sbjct: 248 M--VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKV 305

Query: 407 EEPS----LLDDGLRKRIRDGI 424
            +      LLD+  RK ++  I
Sbjct: 306 GKTERAIKLLDEMRRKGLKPDI 327



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 151/313 (48%), Gaps = 40/313 (12%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           +N+ T F  +    F F+  + TCKE G+    G  +K     L +M  +G+   V T +
Sbjct: 71  INQQTLFPCFSLSGFSFY-VQTTCKESGV----GQAMK----LLDEMRNKGSKPDVVTYN 121

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           V  LI  + +EG ++EA+     M  + C+P+V  +N+++ ++C  G +  A  LL  M 
Sbjct: 122 V--LINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDML 179

Query: 232 LPGFRCPPDVYTYTILISSYCKYGM------------QTGCRK------------AIRRR 267
             G  C P V T+ ILI+  C+ G+              GC                 ++
Sbjct: 180 RKG--CSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKK 237

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           +  A     +M+ +G  PD+V YN L+   CK  +++ A+E+ + ++ KGC P  +TYN+
Sbjct: 238 MDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNT 297

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            I   S V + ++AI+++ +M+    G+ P   +Y+ ++  L   G+V EA  F  +L  
Sbjct: 298 VIDGLSKVGKTERAIKLLDEMR--RKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEG 355

Query: 387 GGSVPREYTYKLV 399
            G  P   TY  +
Sbjct: 356 LGIRPNAITYNSI 368



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 120/274 (43%), Gaps = 29/274 (10%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L DM R+G    V T ++  LI  L  +GL+  A+    +M    C P+  +YN +++ 
Sbjct: 174 LLSDMLRKGCSPSVVTFNI--LINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHG 231

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCR 261
            C+    ++A   L+ M   G  C PD+ TY  L+++ CK G               GC 
Sbjct: 232 FCKEKKMDRAIEYLDIMVSRG--CYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCS 289

Query: 262 KAIRR------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
             +              +   A  L   M  KG  PD++ Y+ L+ G  +  +++ A++ 
Sbjct: 290 PVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKF 349

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
           F D+   G  PN +TYNS +       + D+AI+ +  M +     PT ++YT +I  + 
Sbjct: 350 FHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMIS-KRCKPTEATYTILIEGIA 408

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             G   EA D L EL   G V +    ++    L
Sbjct: 409 YEGLAKEALDLLNELCSRGLVKKSSAEQVAAPVL 442


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 117/236 (49%), Gaps = 22/236 (9%)

Query: 153 DFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           + L +M  RG    VT  +VT   ++  L + G    A +    M +  CRP    YN +
Sbjct: 31  EMLHEMVDRG----VTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTL 86

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           I+ LC+  N ++A+ L+++    GF   PDV TY+IL    CK G           RI E
Sbjct: 87  ISGLCKQQNVDRAKTLVDEFVSSGF--VPDVVTYSILADGLCKRG-----------RIDE 133

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L + M   G  P++V YN LIDG CK  + E+A EL + +   G +P+ VTY   + 
Sbjct: 134 AFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVD 193

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
                  +DKA++M+  M  L  G  P+  +YT ++  LC  GRV EA     E+V
Sbjct: 194 GLCKEGRLDKALKMVEGM--LKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMV 247



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 109/229 (47%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L +    ++A    + M      PD   +N +++ LC+ G F +A  LL  M    
Sbjct: 16  LIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVM--AE 73

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P   TY  LIS  CK           ++ +  A  L    +  GFVPDVV Y+ L 
Sbjct: 74  RNCRPSCCTYNTLISGLCK-----------QQNVDRAKTLVDEFVSSGFVPDVVTYSILA 122

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK  RI+ A EL  +M+  GC PN VTYN+ I      ++ +KA E++  + +    
Sbjct: 123 DGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGF- 181

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           VP   +YT I+  LC+ GR+ +A   +  ++  G  P   TY  + + L
Sbjct: 182 VPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGL 230



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 23/228 (10%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L + G ++EA      M    C P++  YN +I+ LC+     KA  LLE +   GF   
Sbjct: 125 LCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGF--V 182

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PDV TYTI++   CK G           R+ +A  +   ML +G  P V+ Y  L++G C
Sbjct: 183 PDVVTYTIIVDGLCKEG-----------RLDKALKMVEGMLKRGCTPSVITYTALMEGLC 231

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY---SVVNEIDKAIEMMRKMQNLNHGV 355
           +T R++ A  +F +M  K C  + + Y S +  Y   S   E  K ++ +R       G 
Sbjct: 232 RTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIR-------GT 284

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           P    Y  ++   C+ GR+ E  +   ++   G VP   TY +V D L
Sbjct: 285 PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGL 332



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 115/250 (46%), Gaps = 19/250 (7%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG ++E    F  M    C P++  YN+V++ LC+ G  ++A   LE M   G  C PD
Sbjct: 299 KEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG--CVPD 356

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           V +Y I+I          G  KA + +  EA  +   M+  G  PD V YN L+   CK 
Sbjct: 357 VVSYNIIID---------GLFKASKPK--EARQVLDQMIQAGIPPDAVTYNTLMAQFCKE 405

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R + A+ +  +M K G  P+ VTYN+ I   S  N +  A E+M +M      V   ++
Sbjct: 406 ERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTT 465

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGL 416
           Y  II  LC+ G + +A   +  +   G      TY +  D L       E  SLL +  
Sbjct: 466 YNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSE-- 523

Query: 417 RKRIRDGIEY 426
              +RD + Y
Sbjct: 524 MDTLRDEVSY 533



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 21/245 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTT-SSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            ++ N +   ++ + +M R  NG +V+  ++   +I  L +EG + +AL     M     
Sbjct: 437 LSQTNRLGDAYELMHEMLR--NGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGV 494

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
             +   YN+ I+ LC+ G  ++A  LL +M+    R   D  +YT +I   CK       
Sbjct: 495 EANTVTYNIFIDRLCKEGRLDEASSLLSEMDT--LR---DEVSYTTVIIGLCK------- 542

Query: 261 RKAIRRRIWEANHLFRLML-FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                 ++  A+ L R M+  KG       +N LID   KT R++ AL L + M ++GC 
Sbjct: 543 ----AEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCS 598

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ +TYN  I     ++++DKA E+  +M  +   V +S SYT +I+ LC  GR  EA  
Sbjct: 599 PSVITYNMVITCLCKLDKVDKAWELFDEMA-VRGIVASSVSYTVLIYGLCGQGRGKEALQ 657

Query: 380 FLAEL 384
            L E+
Sbjct: 658 VLEEM 662



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 142/365 (38%), Gaps = 97/365 (26%)

Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           ++ QKV  G+ + T +        D +  E    E+  VF             +DM+ RG
Sbjct: 272 KEAQKVVDGI-RGTPYIDVYNALMDGYCKEGRLDEIPNVF-------------EDMACRG 317

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
               + T ++  ++  L + G V+EA      M    C PDV +YN++I+ L +     +
Sbjct: 318 CVPNIKTYNI--VMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKE 375

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           AR +L+QM   G   PPD  TY  L++ +CK             R  +A  + + M+  G
Sbjct: 376 ARQVLDQMIQAGI--PPDAVTYNTLMAQFCK-----------EERFDDAVGILKNMIKAG 422

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI----------------------- 319
             PD V YN LI G  +T R+  A EL  +M + GC+                       
Sbjct: 423 VDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQA 482

Query: 320 -------------PNRVTYNSFI--------------------------RYYSVV----- 335
                         N VTYN FI                           Y +V+     
Sbjct: 483 LLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCK 542

Query: 336 -NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
             ++D+A ++ R+M  +     TS ++  +I A  +  R+ EA   L  +V  G  P   
Sbjct: 543 AEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVI 602

Query: 395 TYKLV 399
           TY +V
Sbjct: 603 TYNMV 607



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 83/173 (47%), Gaps = 12/173 (6%)

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           +  PDV+TY ILI   CK             +  +A+ +   M+ +G  PD V +N ++D
Sbjct: 5   KVAPDVFTYNILIDGLCKAS-----------KTDKASEMLHEMVDRGVTPDTVTFNSIMD 53

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G CK  + ERA  L   M ++ C P+  TYN+ I        +D+A  ++ +  +    V
Sbjct: 54  GLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGF-V 112

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           P   +Y+ +   LC+ GR+ EA + + E+   G  P   TY  + D L  A +
Sbjct: 113 PDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASK 165



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 94/218 (43%), Gaps = 19/218 (8%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EA     +M Q    PD   YN ++   C+   F+ A  +L+ M   G    PD  TY  
Sbjct: 375 EARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGV--DPDNVTYNT 432

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIER 305
           LIS   +             R+ +A  L   ML  G  V     YN +ID  CK   +++
Sbjct: 433 LISGLSQ-----------TNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQ 481

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           AL L D M   G   N VTYN FI        +D+A  ++ +M  L   V    SYT +I
Sbjct: 482 ALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEV----SYTTVI 537

Query: 366 HALCEAGRVLEARDFLAELVD-GGSVPREYTYKLVCDA 402
             LC+A ++  A     E+V   G     +T+ L+ DA
Sbjct: 538 IGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDA 575



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 13/144 (9%)

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           + +N++I+A  +    ++A  LLE M   G  C P V TY ++I+  CK           
Sbjct: 567 HTFNLLIDAFTKTKRLDEALTLLELMVQRG--CSPSVITYNMVITCLCKL---------- 614

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             ++ +A  LF  M  +G V   V+Y  LI G C   R + AL++ ++M    C  + + 
Sbjct: 615 -DKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLK 673

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKM 348
                         ++A E++R+M
Sbjct: 674 CRKLYLALRGQGRGEEAAELLRRM 697


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 116/239 (48%), Gaps = 17/239 (7%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRM---KQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           T  S   ++ V+ +EGL   AL  +  +   K     P+V  +N+VI  +C+VG  + A 
Sbjct: 130 TVKSFNSVLNVIIQEGLFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAV 189

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            +   M  P  +C PDVYTY  L+   CK             RI EA  L   M   G  
Sbjct: 190 QMFRDM--PVSKCQPDVYTYCTLMDGLCK-----------ADRIDEAVSLLDEMQIDGCF 236

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P  V +N LI+G CK   + R  +L D+M  KGC PN VTYN+ I    +  +++KAI +
Sbjct: 237 PSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCLKGKLEKAISL 296

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + +M + +  VP   +Y  II+ L + GR L+    LA + + G    EY Y  +   L
Sbjct: 297 LDRMVS-SKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHVNEYVYSALISGL 354



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 17/243 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  +G + +A++   RM   +C P+V  Y  +IN L + G       +L  ME  G
Sbjct: 280 LIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERG 339

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           +    + Y Y+ LIS   K G           +  EA  LF+ M  K    + + Y+ +I
Sbjct: 340 YHV--NEYVYSALISGLFKEG-----------KSQEAMQLFKEMTVKECELNTIVYSAVI 386

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG C+  + + ALE+  +M    C PN  TY+S ++ +       KAIEM + M   N  
Sbjct: 387 DGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNF- 445

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
                 Y+ +IH LC+ G+V EA    A+++  G  P    Y  + + L+ A    L++D
Sbjct: 446 TQNEVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNA---GLVED 502

Query: 415 GLR 417
            L+
Sbjct: 503 ALQ 505



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 120/263 (45%), Gaps = 18/263 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI  L +EG   EA+  F  M    C  +   Y+ VI+ LCR G  ++A  +L +M  
Sbjct: 348 SALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEALEVLSEMT- 406

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              RC P+ YTY+ L+  + + G      KAI         +++ M    F  + V Y+ 
Sbjct: 407 -NNRCKPNAYTYSSLMKGFFEAG---NGHKAI--------EMWKDMAKHNFTQNEVCYSV 454

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ-NL 351
           LI G CK  +++ A+ ++  M  KGC P+ V Y S I   S    ++ A+++  +M    
Sbjct: 455 LIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQE 514

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
               P   +Y  +++ALC+   +  A D L  ++D G  P   T  +    L    +P  
Sbjct: 515 PDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVTCIIFLRTLREKLDPP- 573

Query: 412 LDDGLRKRIRDGIEYRFRQVMKV 434
             DG  +   DG+  R  +  +V
Sbjct: 574 -QDG--REFLDGLVVRLLKRQRV 593


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 19/243 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L +EG V EA      M +   +PDV  Y+ +++    V    KA+ +   M L G
Sbjct: 275 LVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMG 334

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDV++YTILI+ +CK  M           + EA +LF+ M  K  VP +V Y+ LI
Sbjct: 335 V--TPDVHSYTILINGFCKNKM-----------VDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+ RI    +L D+M  +G   N +TYNS I        +D+AI +  KM+  + G
Sbjct: 382 DGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMK--DQG 439

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
           + P S ++T ++  LC+ GR+ +A++   +L+  G     Y Y ++   +N   +  LL+
Sbjct: 440 IRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVM---INGHCKQGLLE 496

Query: 414 DGL 416
           + L
Sbjct: 497 EAL 499



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 15/207 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V    +  K+M ++     + T S   LI  L + G ++        M+     
Sbjct: 349 FCKNKMVDEALNLFKEMHQKNMVPGIVTYS--SLIDGLCKSGRISYVWDLIDEMRDRGIP 406

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            +V  YN +I+ LC+ G+ ++A  L  +M+  G R  P  +T+TIL+   CK G      
Sbjct: 407 ANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIR--PCSFTFTILLDGLCKGG------ 458

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A   F+ +L KG+  DV  YN +I+G CK   +E AL +   M + GC+PN
Sbjct: 459 -----RLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPN 513

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            VT++  I      +E DKA +++R+M
Sbjct: 514 AVTFDIIINALFKKDENDKAEKLLRQM 540



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 15/222 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P+V  YN +I+ALC+    ++A  L  +M   G     DV TYT LI  +C        
Sbjct: 196 KPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGI--SADVVTYTTLIYGFC-------- 245

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
              I  ++ EA  L   M+ K   P+V  YN L+D  CK  +++ A  +   M K    P
Sbjct: 246 ---IASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKP 302

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + +TY++ +  Y +V E+ KA  +   M +L    P   SYT +I+  C+   V EA + 
Sbjct: 303 DVITYSTLMDGYFLVYELKKAQHVFNAM-SLMGVTPDVHSYTILINGFCKNKMVDEALNL 361

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
             E+     VP   TY  + D L  +   S + D L   +RD
Sbjct: 362 FKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWD-LIDEMRD 402



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 18/234 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           ++  LI      G +    +   ++ +   +P    +  +I  LC  G  NKA    +++
Sbjct: 96  TLNILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKL 155

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +   D  +Y  LI+  CK G   G  K +R+                  P+V  Y
Sbjct: 156 LAQGIKF--DQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTK-----------PNVEMY 202

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-- 348
           N +ID  CK   +  A  LF +M  KG   + VTY + I  + + +++ +AI ++ +M  
Sbjct: 203 NTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVL 262

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + +N   P   +Y  ++ ALC+ G+V EA++ LA ++     P   TY  + D 
Sbjct: 263 KTIN---PNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDG 313



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 14/215 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S T LI    +  +V+EAL  F  M Q    P +  Y+ +I+ LC+ G  +    L+++M
Sbjct: 341 SYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEM 400

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G   P +V TY  LI   CK G            +  A  LF  M  +G  P    +
Sbjct: 401 RDRGI--PANVITYNSLIDGLCKNG-----------HLDRAIALFNKMKDQGIRPCSFTF 447

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             L+DG CK  R++ A E F D+  KG   +   YN  I  +     +++A+ M+ KM+ 
Sbjct: 448 TILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEE 507

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            N  VP + ++  II+AL +     +A   L +++
Sbjct: 508 -NGCVPNAVTFDIIINALFKKDENDKAEKLLRQMI 541



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 51/220 (23%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A++ F RM   R  P +  +N ++++  ++ +++ A  L  ++EL            
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLEL------------ 87

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
                                               KG  PD++  N LI+  C   +I 
Sbjct: 88  ------------------------------------KGIQPDLITLNILINCFCHMGQIT 111

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTP 363
               +   + K+G  P+ +T+ + I+   +  +++KA+    K+  L  G+     SY  
Sbjct: 112 FGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKL--LAQGIKFDQVSYGT 169

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +I+ +C+ G    A   + ++    + P    Y  + DAL
Sbjct: 170 LINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDAL 209


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 123/251 (49%), Gaps = 17/251 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           LI      G +++A A    M   +   PDV  YN +I    + G    A  +L  M   
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C P+VY+YTIL+  +CK G           +I EA ++   M   G  P+ V +NCL
Sbjct: 419 G--CKPNVYSYTILVDGFCKLG-----------KIDEAYNVLNEMSADGLKPNTVGFNCL 465

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I   CK +RI  A+E+F +M +KGC P+  T+NS I     V+EI  A+ ++R M  ++ 
Sbjct: 466 ISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDM--ISE 523

Query: 354 GVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
           GV  ++ +Y  +I+A    G + EAR  + E+V  GS   E TY  +   L  A E    
Sbjct: 524 GVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKA 583

Query: 413 DDGLRKRIRDG 423
                K +RDG
Sbjct: 584 RSLFEKMLRDG 594



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 131/291 (45%), Gaps = 31/291 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   +   ++ L +MS   +G    T    CLI    +E  + EA+  F  M +  C+
Sbjct: 434 FCKLGKIDEAYNVLNEMS--ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCK 491

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDVY +N +I+ LC V     A +LL  M   G     +  TY  LI+++ + G     R
Sbjct: 492 PDVYTFNSLISGLCEVDEIKHALWLLRDMISEG--VVANTVTYNTLINAFLRRGEIKEAR 549

Query: 262 KAIRRRIWE------------------------ANHLFRLMLFKGFVPDVVAYNCLIDGC 297
           K +   +++                        A  LF  ML  G  P  ++ N LI+G 
Sbjct: 550 KLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGL 609

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C++  +E A+E   +M  +G  P+ VT+NS I        I+  + M RK+Q    G+P 
Sbjct: 610 CRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ--AEGIPP 667

Query: 358 SS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
            + ++  ++  LC+ G V +A   L E ++ G VP   T+ ++  ++   E
Sbjct: 668 DTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQE 718



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 140/327 (42%), Gaps = 33/327 (10%)

Query: 125 FFDFFHNEM--TCKEMGIV---FARGNNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKV 178
           F+D    ++  T    G+V   F   N +      L+DM++ G    V  S +   LI  
Sbjct: 205 FYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHG---CVPNSVIYQTLIHS 261

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L +   VNEAL     M    C PD   +N VI  LC+    N+A  ++ +M + GF   
Sbjct: 262 LSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGF--A 319

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRR--------------------RIWEANHLFRLM 278
           PD  TY  L++  CK G     +    R                    R+ +A  +   M
Sbjct: 320 PDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDM 379

Query: 279 LFK-GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           +   G VPDV  YN LI G  K   +  ALE+  DM  KGC PN  +Y   +  +  + +
Sbjct: 380 VTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK 439

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           ID+A  ++ +M + +   P +  +  +I A C+  R+ EA +   E+   G  P  YT+ 
Sbjct: 440 IDEAYNVLNEM-SADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFN 498

Query: 398 LVCDALNAAEEPSLLDDGLRKRIRDGI 424
            +   L   +E       LR  I +G+
Sbjct: 499 SLISGLCEVDEIKHALWLLRDMISEGV 525



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 106/260 (40%), Gaps = 30/260 (11%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  S   ++++L        A   FY M   +  P ++ + VV+ A C V   + A  LL
Sbjct: 181 TFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLL 240

Query: 228 EQMELPGFRCPPDVYTYTILISSYCK-----YGMQ-------TGCRKAIRR--------- 266
             M   G  C P+   Y  LI S  K       +Q        GC               
Sbjct: 241 RDMTKHG--CVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC 298

Query: 267 ---RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              RI EA  +   ML +GF PD + Y  L++G CK  R++ A +LF  + K    P  V
Sbjct: 299 KFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIV 354

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
            +N+ I  +     +D A  ++  M      VP   +Y  +I+   + G V  A + L +
Sbjct: 355 IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHD 414

Query: 384 LVDGGSVPREYTYKLVCDAL 403
           + + G  P  Y+Y ++ D  
Sbjct: 415 MRNKGCKPNVYSYTILVDGF 434



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 18/186 (9%)

Query: 198 FRCRPDVYAYNVVINALCRVGNFNK--ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
           + C P   +YNVV+  L   GN +K  A    + +     + PP ++T+ +++ ++C   
Sbjct: 176 YSCEPTFKSYNVVLEILVS-GNCHKVAANVFYDMLSR---KIPPTLFTFGVVMKAFCAV- 230

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                       I  A  L R M   G VP+ V Y  LI    K  R+  AL+L ++M  
Sbjct: 231 ----------NEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFL 280

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
            GC+P+  T+N  I      + I++A +M+ +M  +    P   +Y  +++ LC+ GRV 
Sbjct: 281 MGCVPDAETFNDVILGLCKFDRINEAAKMVNRML-IRGFAPDDITYGYLMNGLCKIGRVD 339

Query: 376 EARDFL 381
            A+D  
Sbjct: 340 AAKDLF 345



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 14/181 (7%)

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
            R +LE   +  + C P   +Y +++       +   C K        A ++F  ML + 
Sbjct: 166 TRLMLEMRNV--YSCEPTFKSYNVVLEIL----VSGNCHKV-------AANVFYDMLSRK 212

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P +  +  ++   C    I+ AL L  DM K GC+PN V Y + I   S  N +++A+
Sbjct: 213 IPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEAL 272

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +++ +M  L   VP + ++  +I  LC+  R+ EA   +  ++  G  P + TY  + + 
Sbjct: 273 QLLEEMF-LMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNG 331

Query: 403 L 403
           L
Sbjct: 332 L 332


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 170/380 (44%), Gaps = 64/380 (16%)

Query: 56  PRFFFQSPRSIGRQTGFRHRTPLRQRILK---KEAYNIANNVLVLGPAAYRDPQKVTLGL 112
           PR F     +  R   + +   L +++++   +  Y +  N+L+ G  +  +P K  L L
Sbjct: 112 PRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGY-VVYNILIGGICSSEEPGKDVLDL 170

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGN------------NVKGLWDFLKDMSR 160
            +               + EM   E G+V  + N              +  ++ +++M  
Sbjct: 171 AEKA-------------YGEML--EAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMS 215

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           +G   +  TS+ + +I  L     V +A   F  MK+    PDVY Y  +I++ C+ G  
Sbjct: 216 KGF--IPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFI 273

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            +AR   ++ME  G  C P+V TYT LI +Y K            R++ +AN ++ +ML 
Sbjct: 274 EQARNWFDEMERDG--CAPNVVTYTALIHAYLK-----------SRKVSKANEVYEMMLS 320

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC-----------------IPNRV 323
           KG  P++V Y  LIDG CK  +IE+A +++  M K+                    PN  
Sbjct: 321 KGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVF 380

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           TY + +       ++ +A ++++ M ++    P    Y  +I   C+AG++ EA++    
Sbjct: 381 TYGALVDGLCKAYQVKEARDLLKSM-SVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTT 439

Query: 384 LVDGGSVPREYTYKLVCDAL 403
           +++ G  P  YTY  + D L
Sbjct: 440 MLECGYDPNVYTYSSLIDRL 459



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 123/280 (43%), Gaps = 29/280 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   ++   ++  +M R G    V T   T LI    +   V++A   +  M    C 
Sbjct: 267 FCKAGFIEQARNWFDEMERDGCAPNVVT--YTALIHAYLKSRKVSKANEVYEMMLSKGCT 324

Query: 202 PDVYAYNVVINALCRVGNFNKARFLL-----EQMELP----------GFRCPPDVYTYTI 246
           P++  Y  +I+ LC+ G   KA  +      E +E+P          G    P+V+TY  
Sbjct: 325 PNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGA 384

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           L+   CK             ++ EA  L + M  +G  P+ V Y+ LIDGCCK  +++ A
Sbjct: 385 LVDGLCK-----------AYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEA 433

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
            E+F  M + G  PN  TY+S I        +D A++++ KM   N   P    YT +I 
Sbjct: 434 QEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLE-NSCAPNVVIYTEMID 492

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            LC+ G+  EA   +  + + G  P   TY  + D    +
Sbjct: 493 GLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKS 532



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 104/230 (45%), Gaps = 33/230 (14%)

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC +G F KA  ++ +M   GF   PD  TY+ +I   C              ++ +A  
Sbjct: 197 LCGIGKFEKAYNVIREMMSKGF--IPDTSTYSKVIGYLCN-----------ASKVEKAFQ 243

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF+ M   G  PDV  Y  LID  CK   IE+A   FD+M + GC PN VTY + I  Y 
Sbjct: 244 LFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYL 303

Query: 334 VVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEAR-------------- 378
              ++ KA E+   M  L+ G  P   +YT +I  LC+AG++ +A               
Sbjct: 304 KSRKVSKANEVYEMM--LSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIP 361

Query: 379 --DFLAELVDGGS-VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
             D    +VDG S  P  +TY  + D L  A +     D L+    +G E
Sbjct: 362 DVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCE 411



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 120/263 (45%), Gaps = 24/263 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRG--NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
             +   VK   D LK MS  G     +V  +    LI    + G ++EA   F  M +  
Sbjct: 389 LCKAYQVKEARDLLKSMSVEGCEPNHVVYDA----LIDGCCKAGKLDEAQEVFTTMLECG 444

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             P+VY Y+ +I+ L +    + A  +L +M      C P+V  YT +I   CK G    
Sbjct: 445 YDPNVYTYSSLIDRLFKDKRLDLALKVLSKM--LENSCAPNVVIYTEMIDGLCKVG---- 498

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  +  EA  L  +M  KG  P+VV Y  +IDG  K+ R+E+ LEL   M+ KGC 
Sbjct: 499 -------KTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCA 551

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN VTY   I +      +D+A +++ +M+   +     + Y  +I       R   A  
Sbjct: 552 PNFVTYRVLINHCCSTGLLDEAHKLLEEMKQ-TYWPRHVAGYRKVIEGF---NREFIASL 607

Query: 380 FLA-ELVDGGSVPREYTYKLVCD 401
           +L+ E+ +  SVP    Y+++ D
Sbjct: 608 YLSFEISENDSVPVAPVYRVLID 630



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 9/203 (4%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C P    +N +++A CR G++  A  LL++M   G  C P    Y ILI   C       
Sbjct: 108 CYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCG--CQPGYVVYNILIGGIC------S 159

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
             +  +  +  A   +  ML  G V + V  +      C   + E+A  +  +M  KG I
Sbjct: 160 SEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFI 219

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+  TY+  I Y    ++++KA ++ ++M+  N   P    YT +I + C+AG + +AR+
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKR-NGIAPDVYVYTTLIDSFCKAGFIEQARN 278

Query: 380 FLAELVDGGSVPREYTYKLVCDA 402
           +  E+   G  P   TY  +  A
Sbjct: 279 WFDEMERDGCAPNVVTYTALIHA 301



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 107/276 (38%), Gaps = 57/276 (20%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           ++ C    L + G   EAL+   + ++F   PD   Y  +I+ LC    F +A   L +M
Sbjct: 12  TLGCFAHSLCKSGKWREALSLLEK-EEFV--PDTVLYTKMISGLCEASLFEEAMDFLTRM 68

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                 C P+V TY IL+          GC    + ++     +  +M+ +G  P    +
Sbjct: 69  RASS--CLPNVLTYRILL---------CGCLN--KEKLGRCKRILSMMITEGCYPSPRIF 115

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN------------------------ 326
           N L+   C++     A +L   M + GC P  V YN                        
Sbjct: 116 NSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAY 175

Query: 327 ----------------SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
                           +F R    + + +KA  ++R+M +    +P +S+Y+ +I  LC 
Sbjct: 176 GEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGF-IPDTSTYSKVIGYLCN 234

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           A +V +A     E+   G  P  Y Y  + D+   A
Sbjct: 235 ASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKA 270



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
           FVPD V Y  +I G C+    E A++    M    C+PN +TY   +       ++ +  
Sbjct: 38  FVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCK 97

Query: 343 EMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
            ++  M  +  G  P+   +  ++HA C +G    A   L ++V  G  P    Y ++  
Sbjct: 98  RILSMM--ITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIG 155

Query: 402 ALNAAEEP 409
            + ++EEP
Sbjct: 156 GICSSEEP 163



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 22/195 (11%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           R D +      ++LC+ G + +A  LLE+ E       PD   YT +IS  C+  +    
Sbjct: 7   RMDEFTLGCFAHSLCKSGKWREALSLLEKEEFV-----PDTVLYTKMISGLCEASL---- 57

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                    EA      M     +P+V+ Y  L+ GC    ++ R   +   M  +GC P
Sbjct: 58  -------FEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYP 110

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC---EAGR-VLE 376
           +   +NS +  Y    +   A ++++KM       P    Y  +I  +C   E G+ VL+
Sbjct: 111 SPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQ-PGYVVYNILIGGICSSEEPGKDVLD 169

Query: 377 -ARDFLAELVDGGSV 390
            A     E+++ G V
Sbjct: 170 LAEKAYGEMLEAGVV 184



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 84/232 (36%), Gaps = 61/232 (26%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I  L + G  +EA      M++  C P+V  Y  +I+   + G   K   LL+QM  
Sbjct: 488 TEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSS 547

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR--------------RRIWEA-NHLFRL 277
            G  C P+  TY +LI+  C  G+     K +               R++ E  N  F  
Sbjct: 548 KG--CAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIA 605

Query: 278 MLFKGF-------VPDVVAYNCLIDGCCKTYRIE-------------------------- 304
            L+  F       VP    Y  LID   K  R+E                          
Sbjct: 606 SLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIHITL 665

Query: 305 -----------RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
                      +A EL+ DM  +G IP        I+    VN  ++A++++
Sbjct: 666 IENLSLAHKADKAFELYADMISRGSIPELSILVHLIKGLLRVNRWEEALQLL 717


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 122/267 (45%), Gaps = 29/267 (10%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+G      +   LIK     G++++A+  F  M+    +PDV  Y  VI ALCR+G  +
Sbjct: 400 GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 459

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------------- 266
            A     QM   G    PD Y Y  LI  +C +G     ++ I                 
Sbjct: 460 DAMEKFNQMIDQGV--APDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS 517

Query: 267 ---------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    R+ +A ++F L +  G  PD V Y+ L+DG C   ++E+AL +FD M   G
Sbjct: 518 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 577

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLE 376
             PN V Y + +  Y  +  ID+ + + R+M  L  G+ P++  Y+ II  L +AGR + 
Sbjct: 578 IEPNVVVYCTLVNGYCKIGRIDEGLSLFREM--LQRGIKPSTILYSIIIDGLFQAGRTVP 635

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A+    E+ + G      TY +V   L
Sbjct: 636 AKMKFHEMTESGIAMDICTYNIVLRGL 662



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 123/278 (44%), Gaps = 47/278 (16%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D L+ M+  G        +   +I    +EG VN+A   F  M Q    PD+  YN V++
Sbjct: 216 DLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVH 275

Query: 213 ALCRVGNFNKARFLLEQM---------------------------------ELPGFRCPP 239
           ALC+    +KA   L QM                                 E+      P
Sbjct: 276 ALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILP 335

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           DV T ++L+ S CKYG           +I EA  +F  M  KG  PDV +YN +++G   
Sbjct: 336 DVVTLSMLMGSLCKYG-----------KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 384

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTS 358
              +    +LFD M   G  P+  T+N  I+ Y+    +DKA+ +  +M+  +HGV P  
Sbjct: 385 KGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR--DHGVKPDV 442

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +Y  +I ALC  G++ +A +   +++D G  P +Y Y
Sbjct: 443 VTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 480



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 129/266 (48%), Gaps = 22/266 (8%)

Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L++   E    +EAL    +R  +  C PDV++Y++++ +LC  G   +A  LL  M   
Sbjct: 165 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 224

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C P+V  Y  +I  + K G            + +A  LF+ M+ +G  PD+V YN +
Sbjct: 225 GAVCSPNVVAYNTVIDGFFKEG-----------DVNKACDLFKEMVQRGIPPDLVTYNSV 273

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +   CK   +++A      M  K  +PN  TYN+ I  YS   +  +A+ + ++M+   H
Sbjct: 274 VHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR--H 331

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
            + P   + + ++ +LC+ G++ EARD    +   G  P  ++Y ++ +    A +  L+
Sbjct: 332 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGY--ATKGCLV 389

Query: 413 D--DGLRKRIRDGIE---YRFRQVMK 433
           D  D     + DGI    Y F  ++K
Sbjct: 390 DMTDLFDLMLGDGIAPDFYTFNVLIK 415



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 15/218 (6%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           ALA F ++ +   R ++   N ++   C     ++A  +L     P   C PDV++Y+IL
Sbjct: 143 ALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLH-RTPELGCVPDVFSYSIL 201

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV--PDVVAYNCLIDGCCKTYRIER 305
           + S C  G           +  +A+ L R+M   G V  P+VVAYN +IDG  K   + +
Sbjct: 202 LKSLCDQG-----------KSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNK 250

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A +LF +M ++G  P+ VTYNS +        +DKA   +R+M N    +P + +Y  +I
Sbjct: 251 ACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVN-KRVLPNNWTYNNLI 309

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +     G+  EA     E+     +P   T  ++  +L
Sbjct: 310 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSL 347



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 122/286 (42%), Gaps = 15/286 (5%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG  +     + +I  L + G V +A   F         PD   Y+++++  C VG   K
Sbjct: 506 NGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEK 565

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  + + M   G    P+V  Y  L++ YCK G           RI E   LFR ML +G
Sbjct: 566 ALRVFDAMVSAGIE--PNVVVYCTLVNGYCKIG-----------RIDEGLSLFREMLQRG 612

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P  + Y+ +IDG  +  R   A   F +M + G   +  TYN  +R        D+AI
Sbjct: 613 IKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAI 672

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            + ++++ +N  +   +  T +I  + +  RV EA+D  A +     VP   TY ++   
Sbjct: 673 FLFKELRAMNVKINIITLNT-MIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITN 731

Query: 403 LNAAEEPSLLDDGLRKRIRDGIEYRFRQVMK-VKPIMKHKELLKCG 447
           L         +D        G E   R +   V+ ++K  E+++ G
Sbjct: 732 LIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAG 777



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 87/201 (43%), Gaps = 19/201 (9%)

Query: 154 FLKDMSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
             ++M +RG    +  S++  + +I  L + G    A   F+ M +     D+  YN+V+
Sbjct: 604 LFREMLQRG----IKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVL 659

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             L +   F++A FL +  EL       ++ T   +I        QT       RR+ EA
Sbjct: 660 RGLFKNRCFDEAIFLFK--ELRAMNVKINIITLNTMIDGM----FQT-------RRVEEA 706

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             LF  +     VP+VV Y+ +I    K   +E A ++F  M   GC PN    N  +R 
Sbjct: 707 KDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRE 766

Query: 332 YSVVNEIDKAIEMMRKMQNLN 352
               NEI +A   + K+   N
Sbjct: 767 LLKKNEIVRAGAYLSKIDERN 787



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 13/184 (7%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P  +TY IL+           C +A R  +  A   F  +L  G   +++  N L++G C
Sbjct: 122 PTSHTYAILMDC---------CTRAHRPELALA--FFGQLLRTGLRVNIIIANHLLEGFC 170

Query: 299 KTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-P 356
           +  R + AL+ L     + GC+P+  +Y+  ++      +  +A +++R M        P
Sbjct: 171 EAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSP 230

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              +Y  +I    + G V +A D   E+V  G  P   TY  V  AL  A      +  L
Sbjct: 231 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 290

Query: 417 RKRI 420
           R+ +
Sbjct: 291 RQMV 294


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 130/249 (52%), Gaps = 19/249 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + T +I    ++G+++ A +    MKQ    PD++ Y+ +I+ALC++  +   R L  
Sbjct: 213 TRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLF- 271

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            +E+      P+V T+  +I   CK G           ++ +A  + R M+ KG  PDV+
Sbjct: 272 -LEMIHLNIYPNVCTFNSVIDGLCKEG-----------KVEDAEEIMRYMIEKGVDPDVI 319

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN +IDG     +++RA E+FD M  K   P+ ++YN  I  Y+   +ID+A+++ R++
Sbjct: 320 TYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREI 379

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
                G+ P+  +   ++H L E GR   A++F  E++  G +P  YT+   C  L    
Sbjct: 380 S--QKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTH---CTLLGGYF 434

Query: 408 EPSLLDDGL 416
           +  L+++ +
Sbjct: 435 KNGLVEEAM 443



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 112/241 (46%), Gaps = 16/241 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI     +  ++EA+     + Q   +P +   NV+++ L  +G    A+   ++M
Sbjct: 355 SYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEM 414

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PD+YT+  L+  Y K G+           + EA   F  +  +    ++  Y
Sbjct: 415 LSAGH--IPDLYTHCTLLGGYFKNGL-----------VEEAMSHFHKLERRREDTNIQIY 461

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             +IDG CK  ++++A   F+ +   G  P+ +TY + I  Y     +D+A +M+RKM++
Sbjct: 462 TAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMED 521

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
            N  +  + +Y  I+     + +V E + FL E+          T +L+ D +  AE+PS
Sbjct: 522 -NGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDII--AEDPS 578

Query: 411 L 411
           +
Sbjct: 579 I 579



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 12/166 (7%)

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           C P+   Y  +++  CK G              +A  L RLM      P+   Y  +ID 
Sbjct: 174 CEPNEVMYGTVMNGLCKKG-----------HTQKAFDLLRLMEQGSTKPNTRTYTIVIDA 222

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            CK   ++ A  L ++M +K   P+  TY++ I     +++ +    +  +M +LN   P
Sbjct: 223 FCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLN-IYP 281

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              ++  +I  LC+ G+V +A + +  +++ G  P   TY ++ D 
Sbjct: 282 NVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDG 327



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 92/243 (37%), Gaps = 57/243 (23%)

Query: 170 SSVTCLIKVLGEEGLVNE---------ALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           S+ TC I V G  G+ NE         A + F +M + +  P V +++ ++ A+  + ++
Sbjct: 29  STNTCSISVKGNFGVSNEFQNVKCLDDAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHY 88

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           +    L    E+   R P   +  +I+++S                              
Sbjct: 89  SSVVSLFR--EIHKLRIPVHEFILSIVVNS------------------------------ 116

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
                           CC  +R +    +     KKG   N VT+ + IR     N++  
Sbjct: 117 ----------------CCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKD 160

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A+ + +K+   N   P    Y  +++ LC+ G   +A D L  +  G + P   TY +V 
Sbjct: 161 AVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVI 220

Query: 401 DAL 403
           DA 
Sbjct: 221 DAF 223


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 35/252 (13%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
            ++ +++EA+  F +M+Q R  P++  Y  +I+ALC++G  + A     QM   G    P
Sbjct: 353 AKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGM--TP 410

Query: 240 DVYTYTILISSYCKYG---------------------------MQTGCRKAIRRRIWEAN 272
           D++ ++ L+   C                              M   CR+    R+ EA 
Sbjct: 411 DIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREG---RVMEAQ 467

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L  LML  G  PDV++YN L+DG C T RI+ A +L D +   G  P++VTYN+ +  Y
Sbjct: 468 RLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGY 527

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                ID A  + R+M  L  G+ P   +Y  I+H L + GR  EA++    +++  +  
Sbjct: 528 CKARRIDDAYSLFREM--LMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQM 585

Query: 392 REYTYKLVCDAL 403
             YTY ++ + L
Sbjct: 586 NIYTYNIIINGL 597



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 112/235 (47%), Gaps = 20/235 (8%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L  EG V EA      M +   RPDV +YN +++  C  G  ++A  LL+ +   G +  
Sbjct: 457 LCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLK-- 514

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD  TY  L+  YCK            RRI +A  LFR ML KG  PDVV YN ++ G  
Sbjct: 515 PDKVTYNTLLHGYCK-----------ARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLF 563

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVP 356
           +T R   A EL+  M       N  TYN  I      N +D+A +M   +  ++L   + 
Sbjct: 564 QTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIF 623

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
           T++    +I AL + GR  +A D  A +   G VP   TY L+  A N  +E SL
Sbjct: 624 TAN---IMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLI--AENLIKEGSL 673



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 19/237 (8%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFL 226
           ++ + T LI      G +    A F  + +   R  D   ++ ++  LC     ++A  +
Sbjct: 91  SSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDI 150

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG---F 283
           L +  +P F C PDV++Y+IL+  +C             +R  EA  L  +M   G    
Sbjct: 151 LLR-RMPEFGCTPDVFSYSILLKGFCN-----------EKRAEEALELLSMMADDGDGSH 198

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+VV Y  +IDG CK   ++RA  +F  M  KG  PN  TY   I  Y  + +  + ++
Sbjct: 199 TPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQ 258

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           M+++M    HG+ P    Y  ++  LC+ GR  EAR+    ++  G  P    Y ++
Sbjct: 259 MLQEMS--THGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGIL 313



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 122/282 (43%), Gaps = 34/282 (12%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           +  KG++  + D   R N       + TCLI      G   E +     M     +PD Y
Sbjct: 219 DRAKGVFQHMIDKGVRPNNH-----TYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCY 273

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG---------- 255
            Y V+++ LC+ G   +AR + + +   G +  P+V  Y IL+  Y   G          
Sbjct: 274 IYAVLLDYLCKNGRCTEARNIFDSVIRKGIK--PNVTIYGILLHGYATEGSLSEMHSFLD 331

Query: 256 MQTG--------------CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
           +  G              C  A +  I EA H+F  M  +   P++V Y  LID  CK  
Sbjct: 332 LMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLG 391

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS- 360
           R++ A+  F+ M  +G  P+   ++S +     V++ +KA E+    + L+ G+   +  
Sbjct: 392 RVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELF--FEVLDQGIRLDTVF 449

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +  ++  LC  GRV+EA+  +  ++  G  P   +Y  + D 
Sbjct: 450 FNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDG 491



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 119/280 (42%), Gaps = 41/280 (14%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE----QMELPGF 235
           G  GL N+AL  F  M        V A+N ++ A+ R    + +  ++      +     
Sbjct: 28  GSLGL-NDALKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSI 86

Query: 236 RCPPDVYTYTILISSYCKYG------------MQTGCR-----------KAI--RRRIWE 270
           +  P  +TYTILI  +C+ G            ++TG R           K +   +R+ E
Sbjct: 87  KVAPSSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDE 146

Query: 271 ANH-LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG---CIPNRVTYN 326
           A   L R M   G  PDV +Y+ L+ G C   R E ALEL   M   G     PN VTY 
Sbjct: 147 ATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYT 206

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           + I        +D+A  + + M  ++ GV P + +YT +IH     G+  E    L E+ 
Sbjct: 207 TVIDGLCKAQMVDRAKGVFQHM--IDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMS 264

Query: 386 DGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRKRIR 421
             G  P  Y Y ++ D L       E  ++ D  +RK I+
Sbjct: 265 THGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIK 304



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 116/312 (37%), Gaps = 70/312 (22%)

Query: 175 LIKVLGEEGLVNEALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+K L +   V+EA     R M +F C PDV++Y++++   C      +A  LL  M   
Sbjct: 134 LLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADD 193

Query: 234 GFRC-PPDVYTYTILISSYCKYGMQTGCRKAIRRRI-----------------------W 269
           G     P+V TYT +I   CK  M    +   +  I                       W
Sbjct: 194 GDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKW 253

Query: 270 -EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            E   + + M   G  PD   Y  L+D  CK  R   A  +FD + +KG  PN   Y   
Sbjct: 254 KEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGIL 313

Query: 329 IRYYSVVNE-----------------------------------IDKAIEMMRKMQNLNH 353
           +  Y+                                       ID+A+ +  KM+    
Sbjct: 314 LHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQ-QR 372

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV------CDALNAAE 407
             P   +Y  +I ALC+ GRV +A     +++D G  P  + +  +       D    AE
Sbjct: 373 LSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAE 432

Query: 408 EP--SLLDDGLR 417
           E    +LD G+R
Sbjct: 433 ELFFEVLDQGIR 444



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 26/200 (13%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A + F  M      PDV  YN +++ L + G F++A+ L   + +   R   ++YTY
Sbjct: 533 IDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKEL--YLSMINSRTQMNIYTY 590

Query: 245 TILISSYCKYGM--------QTGCRKAIRRRIWEAN----------------HLFRLMLF 280
            I+I+  CK            + C K ++  I+ AN                 LF  +  
Sbjct: 591 NIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISA 650

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G VPDV  Y  + +   K   +E   ELF  M + G  PN    N+ +R+     +I++
Sbjct: 651 YGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDINR 710

Query: 341 AIEMMRKMQNLNHGVPTSSS 360
           A   + K+   N  +  S++
Sbjct: 711 AGAYLSKLDEKNFSLEASTT 730


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 137/289 (47%), Gaps = 27/289 (9%)

Query: 142 FARGNNVKGLWDFLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F +  N++     L  M  R+    +VT SS   L+  L + G +++AL  F RM    C
Sbjct: 199 FCKSGNLEKAMKMLGVMEGRKCVPNVVTYSS---LLHGLCKAGDLDQALDLFRRMTSKGC 255

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+V  Y  +I+ LC     + AR L+++M      CP D  +Y  L+  YC+ G     
Sbjct: 256 VPNVVTYTTLIHGLCAAHKVDAARLLMDEM--TATCCPADTVSYNALLDGYCRLG----- 308

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI- 319
                 RI EA  LF+ M  K  +PD + Y CL+ G C   R+E A  L ++M     I 
Sbjct: 309 ------RIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 362

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ VTY+  +  YS      +A E +++M   N   P + +Y+ +I  LC+AGRV  A +
Sbjct: 363 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVA-PNAVTYSSLIDGLCKAGRVNHAME 421

Query: 380 FLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRKRIRDGI 424
            L  +      P   TY +V + L       E  +LL++ + KR+   +
Sbjct: 422 VLKNV----DKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSV 466



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 126/286 (44%), Gaps = 57/286 (19%)

Query: 165 ELVTTS------SVTCLIKVLGEEGLVNEALATFYRMKQFR---CRPDVYAYNVVINALC 215
           E++T+S      S + LI  L  E  + EA   F  M+       +PDV  Y  +I+  C
Sbjct: 141 EILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFC 200

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
           + GN  KA  +L  ME  G +C P+V TY+ L+   CK G            + +A  LF
Sbjct: 201 KSGNLEKAMKMLGVME--GRKCVPNVVTYSSLLHGLCKAG-----------DLDQALDLF 247

Query: 276 RLMLFKGFVP-----------------------------------DVVAYNCLIDGCCKT 300
           R M  KG VP                                   D V+YN L+DG C+ 
Sbjct: 248 RRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRL 307

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            RIE A +LF +M  K C+P+R+TY   +R +   + +++A  ++  M+      P   +
Sbjct: 308 GRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVT 367

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           Y+ ++     A R +EA +F+ E++     P   TY  + D L  A
Sbjct: 368 YSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKA 413



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 129/262 (49%), Gaps = 25/262 (9%)

Query: 152 WDFLKDMSRRGNG---ELVTTSSVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAY 207
           ++ LK+M R G     +LVT S+V   I    ++G ++ A      M  +    PDV  Y
Sbjct: 29  YEVLKEM-RDGKSVAPDLVTYSTV---INGFCKQGEMDRACEILREMVTRDGMAPDVVTY 84

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
             V++ LCR G  ++A  ++ +M+L G    PD +T++ LI+ +C             R+
Sbjct: 85  TSVVDGLCRDGKMDRACEMVREMKLKGVE--PDKFTFSALITGWCNA-----------RK 131

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK---GCIPNRVT 324
           + EA  L++ +L      D V+ + LI G C+  RI  A ELF +M  +      P+ VT
Sbjct: 132 VDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVT 191

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y + I  +     ++KA++M+  M+     VP   +Y+ ++H LC+AG + +A D    +
Sbjct: 192 YTALIDGFCKSGNLEKAMKMLGVMEG-RKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRM 250

Query: 385 VDGGSVPREYTYKLVCDALNAA 406
              G VP   TY  +   L AA
Sbjct: 251 TSKGCVPNVVTYTTLIHGLCAA 272



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 110/213 (51%), Gaps = 20/213 (9%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M++F   P+   YNVV+N LC+    +KA  +L++M   G    PD+ TY+ +I+ +CK 
Sbjct: 1   MREF-VAPNERTYNVVVNGLCKARLTSKAYEVLKEMR-DGKSVAPDLVTYSTVINGFCKQ 58

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFK-GFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           G M   C             + R M+ + G  PDVV Y  ++DG C+  +++RA E+  +
Sbjct: 59  GEMDRAC------------EILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVRE 106

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           M  KG  P++ T+++ I  +    ++D+A+++ +++   +  +   SS + +I  LC   
Sbjct: 107 MKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSS-SALITGLCRER 165

Query: 373 RVLEARDFLAEL---VDGGSVPREYTYKLVCDA 402
           R+ EA +   E+    DG   P   TY  + D 
Sbjct: 166 RIGEAYELFQEMEMREDGAWKPDVVTYTALIDG 198



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 91/213 (42%), Gaps = 24/213 (11%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + EA   F  M    C PD   Y  ++   C      +ARFLLE M+       PDV 
Sbjct: 308 GRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAG-IDPDVV 366

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWE---ANHLFRLMLFKGFV--------------- 284
           TY+I+++ Y +        + I+  I      N +    L  G                 
Sbjct: 367 TYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNV 426

Query: 285 --PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PDVV Y  +I+G C T R E AL L ++M  K   P+  T+NS I     + ++D+A 
Sbjct: 427 DKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAW 486

Query: 343 EMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRV 374
           +++  M    HG+ P   +YT ++      GR+
Sbjct: 487 KLLVAMA--AHGLEPGMVTYTTLLEGFSRTGRM 517


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 122/267 (45%), Gaps = 29/267 (10%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+G      +   LIK     G++++A+  F  M+    +PDV  Y  VI ALCR+G  +
Sbjct: 387 GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMD 446

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------------- 266
            A     QM   G    PD Y Y  LI  +C +G     ++ I                 
Sbjct: 447 DAMEKFNQMIDQGV--APDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS 504

Query: 267 ---------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    R+ +A ++F L +  G  PD V Y+ L+DG C   ++E+AL +FD M   G
Sbjct: 505 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG 564

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLE 376
             PN V Y + +  Y  +  ID+ + + R+M  L  G+ P++  Y+ II  L +AGR + 
Sbjct: 565 IEPNVVVYCTLVNGYCKIGRIDEGLSLFREM--LQRGIKPSTILYSIIIDGLFQAGRTVP 622

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A+    E+ + G      TY +V   L
Sbjct: 623 AKVKFHEMTESGIAMDICTYNIVLRGL 649



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 123/278 (44%), Gaps = 47/278 (16%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D L+ M+  G        +   +I    +EG VN+A   F  M Q    PD+  YN V++
Sbjct: 203 DLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVH 262

Query: 213 ALCRVGNFNKARFLLEQM---------------------------------ELPGFRCPP 239
           ALC+    +KA   L QM                                 E+      P
Sbjct: 263 ALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILP 322

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           DV T ++L+ S CKYG           +I EA  +F  M  KG  PDV +YN +++G   
Sbjct: 323 DVVTLSMLMGSLCKYG-----------KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 371

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTS 358
              +    +LFD M   G  P+  T+N  I+ Y+    +DKA+ +  +M+  +HGV P  
Sbjct: 372 KGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR--DHGVKPDV 429

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +Y  +I ALC  G++ +A +   +++D G  P +Y Y
Sbjct: 430 VTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY 467



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 129/266 (48%), Gaps = 22/266 (8%)

Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L++   E    +EAL    +R  +  C PDV++Y++++ +LC  G   +A  LL  M   
Sbjct: 152 LLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG 211

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C P+V  Y  +I  + K G            + +A  LF+ M+ +G  PD+V YN +
Sbjct: 212 GAVCSPNVVAYNTVIDGFFKEG-----------DVNKACDLFKEMVQRGIPPDLVTYNSV 260

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +   CK   +++A      M  K  +PN  TYN+ I  YS   +  +A+ + ++M+   H
Sbjct: 261 VHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR--H 318

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
            + P   + + ++ +LC+ G++ EARD    +   G  P  ++Y ++ +    A +  L+
Sbjct: 319 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGY--ATKGCLV 376

Query: 413 D--DGLRKRIRDGIE---YRFRQVMK 433
           D  D     + DGI    Y F  ++K
Sbjct: 377 DMTDLFDLMLGDGIAPDFYTFNVLIK 402



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 15/218 (6%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           ALA F ++ +   R ++   N ++   C     ++A  +L     P   C PDV++Y+IL
Sbjct: 130 ALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLH-RTPELGCVPDVFSYSIL 188

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV--PDVVAYNCLIDGCCKTYRIER 305
           + S C  G           +  +A+ L R+M   G V  P+VVAYN +IDG  K   + +
Sbjct: 189 LKSLCDQG-----------KSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNK 237

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A +LF +M ++G  P+ VTYNS +        +DKA   +R+M N    +P + +Y  +I
Sbjct: 238 ACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVN-KRVLPNNWTYNNLI 296

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +     G+  EA     E+     +P   T  ++  +L
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSL 334



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 122/286 (42%), Gaps = 15/286 (5%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG  +     + +I  L + G V +A   F         PD   Y+++++  C VG   K
Sbjct: 493 NGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEK 552

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  + + M   G    P+V  Y  L++ YCK G           RI E   LFR ML +G
Sbjct: 553 ALRVFDAMVSAGIE--PNVVVYCTLVNGYCKIG-----------RIDEGLSLFREMLQRG 599

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P  + Y+ +IDG  +  R   A   F +M + G   +  TYN  +R        D+AI
Sbjct: 600 IKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAI 659

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            + ++++ +N  +   +  T +I  + +  RV EA+D  A +     VP   TY ++   
Sbjct: 660 FLFKELRAMNVKINIITLNT-MIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITN 718

Query: 403 LNAAEEPSLLDDGLRKRIRDGIEYRFRQVMK-VKPIMKHKELLKCG 447
           L         +D        G E   R +   V+ ++K  E+++ G
Sbjct: 719 LIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAG 764



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 19/201 (9%)

Query: 154 FLKDMSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
             ++M +RG    +  S++  + +I  L + G    A   F+ M +     D+  YN+V+
Sbjct: 591 LFREMLQRG----IKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVL 646

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             L +   F++A FL +  EL       ++ T   +I        QT       RR+ EA
Sbjct: 647 RGLFKNRCFDEAIFLFK--ELRAMNVKINIITLNTMIDGM----FQT-------RRVEEA 693

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             LF  +     VP VV Y+ +I    K   +E A ++F  M   GC PN    N  +R 
Sbjct: 694 KDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRE 753

Query: 332 YSVVNEIDKAIEMMRKMQNLN 352
               NEI +A   + K+   N
Sbjct: 754 LLKKNEIVRAGAYLSKIDERN 774



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 13/184 (7%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P  +TY IL+           C +A R  +  A   F  +L  G   +++  N L++G C
Sbjct: 109 PTSHTYAILMDC---------CTRAHRPELALA--FFGQLLRTGLRVNIIIANHLLEGFC 157

Query: 299 KTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-P 356
           +  R + AL+ L     + GC+P+  +Y+  ++      +  +A +++R M        P
Sbjct: 158 EAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSP 217

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              +Y  +I    + G V +A D   E+V  G  P   TY  V  AL  A      +  L
Sbjct: 218 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 277

Query: 417 RKRI 420
           R+ +
Sbjct: 278 RQMV 281


>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 654

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 166/391 (42%), Gaps = 45/391 (11%)

Query: 11  HTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRS--IGR 68
           H CL  Q   + L+ +  +     +   T + F    V  V + + ++  + P+     R
Sbjct: 60  HGCLTNQFGLIRLQEISINH----TDDHTHDEFA-SDVEKVYRILRKYHSRVPKLELALR 114

Query: 69  QTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDF 128
           ++G   R  L +R+L +            G A            N A  FY W  +    
Sbjct: 115 ESGVVVRPGLTERVLSR-----------CGDAG-----------NLAYRFYSWASKQSGH 152

Query: 129 FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188
             +    K M  V +R      +W  +++M R+ N  L+T      L++      +V++A
Sbjct: 153 RLDHDAYKAMIKVLSRMRQFGAVWALIEEM-RQENPHLITPQVFVILMRRFASARMVHKA 211

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           +     M ++ C PD Y +  +++ALC+ G+  +A  L E M    +R  P V  +T L+
Sbjct: 212 VEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMR---YRWKPSVKHFTSLL 268

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
             +CK G           ++ EA H+   M   G  PD+V YN L+ G  +  ++  A +
Sbjct: 269 YGWCKEG-----------KLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYD 317

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           L  +M +K C PN  +Y   I+       +++A  +  +MQ  N       +Y+ +I   
Sbjct: 318 LLKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRLFVEMQT-NGCQADVVTYSTLISGF 376

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           C+ G++    + L E++  G  P +  Y+ +
Sbjct: 377 CKWGKIKRGYELLDEMIQQGHFPNQVIYQHI 407



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 117/263 (44%), Gaps = 17/263 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
              +  +VK      +DM  R      +    T L+    +EG + EA     +MK    
Sbjct: 236 ALCKNGSVKEAASLFEDMRYRWKP---SVKHFTSLLYGWCKEGKLMEAKHVLVQMKDMGI 292

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD+  YN ++    + G    A  LL++M     RC P+  +YT+LI S CK+      
Sbjct: 293 EPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRK--RCEPNATSYTVLIQSLCKH------ 344

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+ EA  LF  M   G   DVV Y+ LI G CK  +I+R  EL D+M ++G  P
Sbjct: 345 -----ERLEEATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFP 399

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N+V Y   +  +    E+++  E++ +MQ +    P  S Y  +I   C+ G V E    
Sbjct: 400 NQVIYQHIMLAHEKKEELEECKELVNEMQKIG-CAPDLSIYNTVIRLACKLGEVKEGIQL 458

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
             E+   G  P   T+ ++ +  
Sbjct: 459 WNEMESSGLSPGMDTFVIMINGF 481



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 114/283 (40%), Gaps = 63/283 (22%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+    + G + +A      M++ RC P+  +Y V+I +LC+     +A  L  +M+  G
Sbjct: 302 LLGGYAQAGKMGDAYDLLKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRLFVEMQTNG 361

Query: 235 FRCPPDVYTYTILISSYCKYG------------MQTGC--RKAIRRRIWEANHLFRL--- 277
             C  DV TY+ LIS +CK+G            +Q G    + I + I  A+        
Sbjct: 362 --CQADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMLAHEKKEELEE 419

Query: 278 -------MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY----N 326
                  M   G  PD+  YN +I   CK   ++  ++L+++M   G  P   T+    N
Sbjct: 420 CKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGIQLWNEMESSGLSPGMDTFVIMIN 479

Query: 327 SFIR-----------------------YYSVVNEI------DKAIEMMRKMQN---LNHG 354
            F+                         Y  + E+       + +EM +   N    + G
Sbjct: 480 GFLEQGCLVEACEYFKEMVGRGLFTAPQYGTLKELMNSLLRAEKLEMAKDAWNCITASKG 539

Query: 355 VPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
              + S++T  IHAL   G V EA  F  +++D   +P   T+
Sbjct: 540 CQLNVSAWTIWIHALFSKGHVKEACSFCIDMMDKDLMPNPDTF 582


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 109/230 (47%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++K L   G V EA+     M +    PD+ +YN +IN LC+     +A  LL +ME  G
Sbjct: 4   VLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAG 63

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+  T T L+   CK G           R+ EA  L   M  KGF  DVV Y  LI
Sbjct: 64  --CFPNSVTCTTLMDGLCKDG-----------RMDEAMELLEAMKKKGFDADVVLYGTLI 110

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C    ++R  ELFD+M  KG   N VTY+  +     + +  +A  ++  M    HG
Sbjct: 111 SGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMA--EHG 168

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + P   +YT +I  LC+ GR   A D L  +V+ G  P   TY ++   L
Sbjct: 169 IHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGL 218



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 16/243 (6%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G      + +CL+  L   G   EA      M +    PDV  Y  +I+ LC+ G   
Sbjct: 131 GKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRAT 190

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
            A  LL  M   G    P   TY +L+S  CK G+           + +A  + R+M+ K
Sbjct: 191 HAMDLLNLMVEKGEE--PSNVTYNVLLSGLCKEGL-----------VIDAFKILRMMIEK 237

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDM-NKKGCI-PNRVTYNSFIRYYSVVNEID 339
           G   DVV YN L+ G C   +++ AL+LF+ M + + C+ PN  T+N  I        + 
Sbjct: 238 GKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLT 297

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           KA+++ RKM           +Y  ++    +AG++ EA +   +++D G VP  +TY ++
Sbjct: 298 KAVKIHRKMVK-KGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSIL 356

Query: 400 CDA 402
            D 
Sbjct: 357 IDG 359



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 22/240 (9%)

Query: 170 SSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           +SVTC  L+  L ++G ++EA+     MK+     DV  Y  +I+  C  GN ++ + L 
Sbjct: 67  NSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELF 126

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EANHLFRLMLFKGFVPD 286
           ++M   G     +V TY+ L+   C+ G             W EAN +   M   G  PD
Sbjct: 127 DEMLGKGI--SANVVTYSCLVHGLCRLGQ------------WKEANTVLNAMAEHGIHPD 172

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           VV Y  LIDG CK  R   A++L + M +KG  P+ VTYN  +        +  A +++R
Sbjct: 173 VVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILR 232

Query: 347 KMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSV--PREYTYKLVCDAL 403
            M  +  G      +Y  ++  LC+ G+V EA      + D  +   P  +T+ ++   L
Sbjct: 233 MM--IEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGL 290



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 18/235 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L +   + EA+     M+   C P+      +++ LC+ G  ++A  LLE M
Sbjct: 35  SYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAM 94

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  GF    DV  Y  LIS +C  G            +     LF  ML KG   +VV Y
Sbjct: 95  KKKGF--DADVVLYGTLISGFCNNG-----------NLDRGKELFDEMLGKGISANVVTY 141

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           +CL+ G C+  + + A  + + M + G  P+ VTY   I           A++++  M  
Sbjct: 142 SCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVE 201

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCD 401
                P++ +Y  ++  LC+ G V++A   L  +++ G      TY    K +CD
Sbjct: 202 KGE-EPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCD 255



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 16/197 (8%)

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           N+V+  LCR G   +A  L+ +M        PD+ +Y  LI+  CK            ++
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSV--SPDIVSYNTLINGLCK-----------AKK 48

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + EA  L   M   G  P+ V    L+DG CK  R++ A+EL + M KKG   + V Y +
Sbjct: 49  LKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGT 108

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVD 386
            I  +     +D+  E+  +M  L  G+  +  +Y+ ++H LC  G+  EA   L  + +
Sbjct: 109 LISGFCNNGNLDRGKELFDEM--LGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAE 166

Query: 387 GGSVPREYTYKLVCDAL 403
            G  P   TY  + D L
Sbjct: 167 HGIHPDVVTYTGLIDGL 183



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 123/297 (41%), Gaps = 31/297 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D L  M  +G  E  +  +   L+  L +EGLV +A      M +   + DV  YN ++ 
Sbjct: 194 DLLNLMVEKG--EEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMK 251

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT-------------- 258
            LC  G  ++A  L   M        P+V+T+ +LI   CK G  T              
Sbjct: 252 GLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGS 311

Query: 259 ------------GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
                       GC KA   +I EA  L++ +L  GFVP+   Y+ LIDG CK   +  A
Sbjct: 312 CGNLVTYNMLLGGCLKA--GKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIA 369

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
             LF +M   G  P    YN+ +        +++A  + ++M N N   P   S+  +I 
Sbjct: 370 KGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANC-EPDIISFNTMID 428

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
              +AG     ++   ++V+ G  P   T+  + + L+   E       L + +  G
Sbjct: 429 GTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASG 485



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 13/155 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L +EG + +A + F  M    C PD+ ++N +I+   + G+F   + L  +M   G
Sbjct: 391 LMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMG 450

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R  PD  T++ LI+   K G     + A+ R           M+  GF PD + Y+ L+
Sbjct: 451 LR--PDALTFSTLINRLSKLGELDEAKSALER-----------MVASGFTPDALVYDSLL 497

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            G          + L   M  KG + +R   ++ +
Sbjct: 498 KGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTIL 532



 Score = 41.2 bits (95), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 13/117 (11%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M +   RPD   ++ +IN L ++G  ++A+  LE+M   GF   PD   Y  L+     
Sbjct: 445 KMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGF--TPDALVYDSLLKGLSS 502

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            G  T           E  +L   M  KG V D    + ++   C + +    +EL 
Sbjct: 503 KGDTT-----------EIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELL 548


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 143/302 (47%), Gaps = 33/302 (10%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVN 186
            F N +T  EM   +    + K     + +M +RG+   LVT +++   IK   + G   
Sbjct: 591 LFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTI---IKGYCDSGNTT 647

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
            AL     M+   C+PD ++Y  +I   C++     A  L  +M   G  CP +V TYT 
Sbjct: 648 SALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGL-CPNEV-TYTA 705

Query: 247 LISSYCK------------YGMQTGCRKAIR------------RRIWEANHLFRLMLFKG 282
           LI  YCK            +  ++GCR  ++                 A  L ++M+ +G
Sbjct: 706 LIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEG 765

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+VV Y  +IDG CK      ALE+F+ M ++GC+PN +TY+S IR      ++++A 
Sbjct: 766 IFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAE 825

Query: 343 EMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
            +  +++   HG +P   +Y  +I A   +G+V  A +FL  ++  G  P  +TY ++  
Sbjct: 826 NLFAELE--RHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 883

Query: 402 AL 403
            L
Sbjct: 884 GL 885



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 116/273 (42%), Gaps = 53/273 (19%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF--------- 235
           ++ AL  F +M +  C P+   Y+ +IN LC  G  N+A  L+ +M L G          
Sbjct: 436 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 495

Query: 236 ------------------------RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
                                    C P+VYTYT LIS  C  G+           +  A
Sbjct: 496 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGL-----------LKVA 544

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             LF  M   G  P+ V YN LI+   +  RI+ A  + + M + G   N VTYN  I+ 
Sbjct: 545 IGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKG 604

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           Y ++ +  KA+ +M  M    H      +Y  II   C++G    A   L  + DGG  P
Sbjct: 605 YCILGDPKKAMLVMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKP 663

Query: 392 REYTY-KLVCDALNAAEEPS-------LLDDGL 416
            E++Y +L+C     ++  S       ++DDGL
Sbjct: 664 DEWSYTELICGFCKISKMESAFGLFNEMVDDGL 696



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 16/255 (6%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           V   +D +++M    +G L T  + T  I  L + G   +A   F  MK   C P+VY Y
Sbjct: 471 VNEAFDLIREMIL--HGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 528

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
             +I+ LC  G    A  L  +M   G    P+  TY  LI+   +            RR
Sbjct: 529 TALISGLCVSGLLKVAIGLFHRMSRDGVF--PNTVTYNALINILVE-----------NRR 575

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           I  A  +  LM   G   ++V YN +I G C     ++A+ + ++M ++G   N VTYN+
Sbjct: 576 IKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 635

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I+ Y        A+ ++  M++     P   SYT +I   C+  ++  A     E+VD 
Sbjct: 636 IIKGYCDSGNTTSALRILDLMRD-GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDD 694

Query: 388 GSVPREYTYKLVCDA 402
           G  P E TY  + D 
Sbjct: 695 GLCPNEVTYTALIDG 709



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 118/307 (38%), Gaps = 51/307 (16%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           W    DM  +G    V T   T LI  L   GL+  A+  F+RM +    P+   YN +I
Sbjct: 510 WRLFVDMKNKGCEPNVYT--YTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI 567

Query: 212 NAL-----------------------------------CRVGNFNKARFLLEQMELPGFR 236
           N L                                   C +G+  KA  ++  M   G  
Sbjct: 568 NILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHS 627

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
              ++ TY  +I  YC  G  T    A+R        +  LM   G  PD  +Y  LI G
Sbjct: 628 --ANLVTYNTIIKGYCDSGNTT---SALR--------ILDLMRDGGCKPDEWSYTELICG 674

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            CK  ++E A  LF++M   G  PN VTY + I  Y    ++D A  ++  M+  +   P
Sbjct: 675 FCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKR-SGCRP 733

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              +Y  +IH L +      A +    +++ G  P   TY  + D L      SL  +  
Sbjct: 734 NVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMF 793

Query: 417 RKRIRDG 423
            K I  G
Sbjct: 794 NKMIEQG 800



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 16/251 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK    +  +   ++    + Q   R  ++AY+ ++  L R+G          +M   G
Sbjct: 321 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 380

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P++  Y  +I++ CK G      + I ++++E+             PD   Y  +I
Sbjct: 381 VQ--PNLLIYNAVINALCKDG-NVADAETIMKKVFESE----------MSPDTFTYTSMI 427

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C+ + ++ AL++F+ M K+GC PN VTY++ I        +++A +++R+M  + HG
Sbjct: 428 LGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM--ILHG 485

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
           + PT+ + T  I ALC+ G   +A     ++ + G  P  YTY  +   L  +    +  
Sbjct: 486 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAI 545

Query: 414 DGLRKRIRDGI 424
               +  RDG+
Sbjct: 546 GLFHRMSRDGV 556



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 81/212 (38%), Gaps = 53/212 (25%)

Query: 166  LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
            L+T SS   LI+ LG+EG V EA   F  +++    PD   Y  +I A    G    A  
Sbjct: 805  LLTYSS---LIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFN 861

Query: 226  LLEQMELPGFRCPPDVYTYTILISSY--------------------CKYGMQTGCRKAIR 265
             L +M   G  C P ++TY +LI                       C +G QT  + A+ 
Sbjct: 862  FLGRMIKAG--CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVS 919

Query: 266  ----------------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                                         R +EAN L   M+ +G  PD  AYN L+   
Sbjct: 920  VMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSL 979

Query: 298  CKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
             +   ++ A+ +F  M+ +GC  +   Y   I
Sbjct: 980  LRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 1011



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 16/149 (10%)

Query: 185  VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             NE L +   + Q  C PD  AYN ++ +L RV N + A  + + M   G  C   +  Y
Sbjct: 953  ANELLGSM--ISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQG--CEVHLNGY 1007

Query: 245  TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
              LI + C+           RR+  EA   F  ML + + PD V    LIDG  +    +
Sbjct: 1008 KELICALCQLH---------RRK--EARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKD 1056

Query: 305  RALELFDDMNKKGCIPNRVTYNSFIRYYS 333
              +E    M  +  +P+   Y    R  S
Sbjct: 1057 LCMEFLHIMETRRYMPSFHIYTILAREAS 1085


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 132/263 (50%), Gaps = 26/263 (9%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +I  L ++G  ++A   +  M++    PD++ YN +I+  C  G +++A+ LL++M  
Sbjct: 253 SAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEM-- 310

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +  P+V TY+ LI++Y K            R+ +EA  L+  ML +G +P+ + YN 
Sbjct: 311 LERKINPNVVTYSALINAYVK-----------ERKFFEAEELYDEMLPRGIIPNTITYNS 359

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +IDG CK  R++ A  +F  M  KGC P+  T+N+ I  Y     ID   E++ +M    
Sbjct: 360 MIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETG 419

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
             V  +++Y  +IH  C  G +  A D   +++  G  P   T   + D         L 
Sbjct: 420 L-VADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG--------LC 470

Query: 413 DDGLRKRIRDGIEYRFRQVMKVK 435
           D+G   +++D +E  F+ + K K
Sbjct: 471 DNG---KLKDALEM-FKAMQKSK 489



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 114/236 (48%), Gaps = 21/236 (8%)

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           ++ + +M++ +   DVY++N++I   C       A     ++   GF+  PDV T++ L+
Sbjct: 97  ISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQ--PDVVTFSTLL 154

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
              C           +  R+ EA  LF  M      P+VV +  L++G C+  R+  A+ 
Sbjct: 155 HGLC-----------VEDRVSEALDLFHQMC----RPNVVTFTTLMNGLCREGRVVEAVA 199

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           L D M + G  PN++TY + +     + +   A+ ++RKM+ ++H  P    Y+ II  L
Sbjct: 200 LLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGL 259

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA----AEEPSLLDDGLRKRI 420
            + GR  +A +   E+ + G  P  +TY  + D   +    +E   LL + L ++I
Sbjct: 260 WKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKI 315



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 26/205 (12%)

Query: 157 DMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFR-----------CRPD 203
           D+S++     V    VTC  L+  L + G + +AL  F  M++ +             PD
Sbjct: 445 DLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPD 504

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V  YN++I+ L   G F +A  L ++M   G    P+  TY+ +I+  CK          
Sbjct: 505 VQTYNILISGLINEGKFLEAEELYKEMPHRGI--VPNTITYSSMINGLCK---------- 552

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
            + R+ EA  +F  M  K F PDVV +N L+ G CK  R++  LELF +M ++G + + +
Sbjct: 553 -QSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAI 611

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM 348
           TY + I  +  V  I+ A+++ ++M
Sbjct: 612 TYITLIHGFRKVGNINGALDIFQEM 636



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 103/256 (40%), Gaps = 26/256 (10%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           + R+ N  +VT S+   LI    +E    EA   +  M      P+   YN +I+  C+ 
Sbjct: 311 LERKINPNVVTYSA---LINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQ 367

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
              + A  +   M   G  C PDV+T+  LI  YC             +RI +   L   
Sbjct: 368 NRLDAAEHMFYVMATKG--CSPDVFTFNTLIDGYCG-----------AKRIDDGTELLHE 414

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M   G V D   YN LI G C    +  AL+L   M   G  P+ VT N+ +       +
Sbjct: 415 MTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGK 474

Query: 338 IDKAIEMMRKMQN----------LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
           +  A+EM + MQ            N   P   +Y  +I  L   G+ LEA +   E+   
Sbjct: 475 LKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHR 534

Query: 388 GSVPREYTYKLVCDAL 403
           G VP   TY  + + L
Sbjct: 535 GIVPNTITYSSMINGL 550



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 3/212 (1%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++     + M +     D   YN +I+  C VG+ N A  L +QM   G  CP D+ T 
Sbjct: 405 IDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGV-CP-DIVTC 462

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L+   C  G      +  +        L     F G  PDV  YN LI G     +  
Sbjct: 463 NTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFL 522

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A EL+ +M  +G +PN +TY+S I      + +D+A +M   M + +   P   ++  +
Sbjct: 523 EAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFS-PDVVTFNTL 581

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +   C+AGRV +  +   E+   G V    TY
Sbjct: 582 VSGYCKAGRVDDGLELFCEMGRRGIVADAITY 613



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 118/295 (40%), Gaps = 72/295 (24%)

Query: 188 ALATFYRMKQFRCRPDVYAY--------------------------NVV-----INALCR 216
           AL+TF ++ +   +PDV  +                          NVV     +N LCR
Sbjct: 131 ALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPNVVTFTTLMNGLCR 190

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR--------- 267
            G   +A  LL++M   G +  P+  TY  ++   CK G        +R+          
Sbjct: 191 EGRVVEAVALLDRMVEDGLQ--PNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPN 248

Query: 268 ----------IW------EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
                     +W      +A++L+  M  KG  PD+  YNC+IDG C + R   A  L  
Sbjct: 249 VVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQ 308

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCE 370
           +M ++   PN VTY++ I  Y    +  +A E+  +M  L  G +P + +Y  +I   C+
Sbjct: 309 EMLERKINPNVVTYSALINAYVKERKFFEAEELYDEM--LPRGIIPNTITYNSMIDGFCK 366

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
             R+  A      +   G  P  +T+  + D    A           KRI DG E
Sbjct: 367 QNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGA-----------KRIDDGTE 410


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 131/297 (44%), Gaps = 59/297 (19%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G    T++ T LI+ L  EG + +AL  F +M     +P+V  Y  +IN LC+VGN N A
Sbjct: 134 GHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAA 193

Query: 224 RFLLEQME---------------------------------LPGFRCPPDVYTYTILISS 250
             LL  ME                                 + G    PD++TYT LI S
Sbjct: 194 IRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHS 253

Query: 251 YCKY----GMQTGCRKAIRRRIW--------------------EANHLFRLMLFKGFVPD 286
            C       + T   + I  +I                     EA+ +  +M+ +G  P+
Sbjct: 254 LCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPN 313

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           VV YN L+DG C    ++ A+++FD M   G  PN ++YN+ I  Y  +  +DKA  +  
Sbjct: 314 VVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFE 373

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +M      +P + +Y  ++H  C  GR+ +A     E+V  G +P   TY+++ D L
Sbjct: 374 EMCQ-KELIPNTVTYNTLMHX-CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYL 428



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 116/266 (43%), Gaps = 29/266 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL++F RM      P    +N ++ ++ +   +     L  QM+   F  PPDVYT 
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMD--SFGIPPDVYTL 107

Query: 245 TILISSYC----------------KYGMQTGCRK--------AIRRRIWEANHLFRLMLF 280
            ILI+S+C                K G Q              +  +I +A HLF  M+ 
Sbjct: 108 NILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 167

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +GF P+VV Y  LI+G CK      A+ L   M +  C P+ V Y S I       ++ +
Sbjct: 168 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 227

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A  +  KM  +  G+ P   +YT +IH+LC           L ++++   +P    +  V
Sbjct: 228 AFNLFSKM--VGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTV 285

Query: 400 CDALNAAEEPSLLDDGLRKRIRDGIE 425
            DAL    + +   D +   I  G+E
Sbjct: 286 VDALCKEGKITEAHDVVDMMIIRGVE 311



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 110/231 (47%), Gaps = 15/231 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + ++  L +EG + EA      M      P+V  YN +++  C     ++A  + + M  
Sbjct: 283 STVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVH 342

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G+   P+V +Y  LI+ YCK            +R+ +A +LF  M  K  +P+ V YN 
Sbjct: 343 NGY--APNVISYNTLINGYCKI-----------QRMDKATYLFEEMCQKELIPNTVTYNT 389

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+  C    R++ A+ LF +M   G IP+  TY   + Y    + +D+A+ +++ ++  N
Sbjct: 390 LMHXC-HVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSN 448

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              P    YT +I  +C AG +  ARD  + L   G  P   TY ++ + L
Sbjct: 449 MD-PDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGL 498



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 16/204 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + +A+A F+ M      PD+  Y ++++ LC+  + ++A  LL+ +E  G    PD+ 
Sbjct: 397 GRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIE--GSNMDPDIQ 454

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
            YTI+I   C+ G            +  A  +F  +  KG  P+V  Y  +I+G C+   
Sbjct: 455 IYTIVIDGMCRAG-----------ELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGL 503

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSY 361
           ++ A +LF +M+  GC P+  TYN+  +      E  +AI+++++M  L  G     S+ 
Sbjct: 504 LDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEM--LARGFSADVSTT 561

Query: 362 TPIIHALCEAGRVLEARDFLAELV 385
           T ++  LC+       +  L+E V
Sbjct: 562 TLLVEMLCDDKLDQSVKQILSEFV 585



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 114/283 (40%), Gaps = 81/283 (28%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M   +  PDV  ++ V++ALC+ G   +A  +++ M + G    P+V TY  L+  +C 
Sbjct: 269 QMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVE--PNVVTYNALMDGHC- 325

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                     ++  + EA  +F  M+  G+ P+V++YN LI+G CK  R+++A  LF++M
Sbjct: 326 ----------LQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEM 375

Query: 314 NKKGCIPNRVT----------------------------------YNSFIRYYSVVNEID 339
            +K  IPN VT                                  Y   + Y    + +D
Sbjct: 376 CQKELIPNTVTYNTLMHXCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLD 435

Query: 340 KAIEMMRKMQNLN---------------------------------HGV-PTSSSYTPII 365
           +A+ +++ ++  N                                  G+ P   +YT +I
Sbjct: 436 EAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMI 495

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           + LC  G + EA     E+   G  P   TY  +   L   +E
Sbjct: 496 NGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKE 538



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 13/156 (8%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
            +G++   ++   L+  L ++  ++EA+A    ++     PD+  Y +VI+ +CR G   
Sbjct: 411 AHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELE 470

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
            AR +   +   G R  P+V TYTI+I+  C+ G+           + EAN LF  M   
Sbjct: 471 AARDIFSNLSSKGLR--PNVRTYTIMINGLCRRGL-----------LDEANKLFMEMDGN 517

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
           G  PD   YN +  G  +     RA++L  +M  +G
Sbjct: 518 GCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARG 553



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R   ++   D   ++S +G    V T ++  +I  L   GL++EA   F  M    C PD
Sbjct: 465 RAGELEAARDIFSNLSSKGLRPNVRTYTI--MINGLCRRGLLDEANKLFMEMDGNGCSPD 522

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
              YN +   L +     +A  LL++M   GF    DV T T+L+   C
Sbjct: 523 GCTYNTITQGLLQNKEALRAIQLLQEMLARGFS--ADVSTTTLLVEMLC 569


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 26/263 (9%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +I  L ++G  ++A   F  M++    PD++ YN +I   C  G ++ A  LL++M  
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM-- 316

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +  PDV TY  LI+++ K G           + +EA  L+  ML +G +P+ + Y+ 
Sbjct: 317 LERKISPDVVTYNALINAFVKEG-----------KFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +IDG CK  R++ A  +F  M  KGC PN +T+N+ I  Y     ID  +E++ +M    
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
             V  +++Y  +IH     G +  A D L E++  G  P   T    CD L       L 
Sbjct: 426 L-VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVT----CDTL----LDGLC 476

Query: 413 DDGLRKRIRDGIEYRFRQVMKVK 435
           D+G   +++D +E  F+ + K K
Sbjct: 477 DNG---KLKDALEM-FKVMQKSK 495



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 132/276 (47%), Gaps = 39/276 (14%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L  E  V+EAL  F++M +  CRP+V  +  ++N LCR G   +A  LL++M   G
Sbjct: 155 LLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P   TY  ++   CK G  T     + R++ E +H+         +P+VV Y+ +I
Sbjct: 215 LQ--PTQITYGTIVDGMCKIG-DTVSALDLLRKMEEISHI---------IPNVVIYSAII 262

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK  R   A  LF +M +KG  P+  TYNS I  +        A +++++M  L   
Sbjct: 263 DSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM--LERK 320

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA------LNAAE 407
           + P   +Y  +I+A  + G+  EA +   E++  G +P   TY  + D       L+AAE
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 408 -----------EPSL-----LDDGL--RKRIRDGIE 425
                       P+L     L DG    KRI DG+E
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME 416



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 116/236 (49%), Gaps = 17/236 (7%)

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           ++ + +M++ + R D+Y++ ++I   C       A     ++   G    PDV T+  L+
Sbjct: 99  ISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLH--PDVVTFNTLL 156

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
              C           +  R+ EA +LF  M      P+VV +  L++G C+  RI  A+ 
Sbjct: 157 HGLC-----------VEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVA 205

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           L D M + G  P ++TY + +     + +   A++++RKM+ ++H +P    Y+ II +L
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSL 265

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRI 420
           C+ GR  +A++   E+ + G  P  +TY  +    C +   ++   LL + L ++I
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 112/265 (42%), Gaps = 23/265 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L +M+    G +  T++   LI      G +N AL     M      PD+   + +++
Sbjct: 416 ELLHEMTE--TGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLD 473

Query: 213 ALCRVGNFNKARFLLEQME---------LPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
            LC  G    A  + + M+          P     PDV TY ILIS     G        
Sbjct: 474 GLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG-------- 525

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              +  EA  L+  M  +G VPD + Y+ +IDG CK  R++ A ++FD M  K   PN V
Sbjct: 526 ---KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVV 582

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           T+ + I  Y     +D  +E+  +M      V  + +Y  +I    + G +  A D   E
Sbjct: 583 TFTTLINGYCKAGRVDDGLELFCEMGRRGI-VANAITYITLICGFRKVGNINGALDIFQE 641

Query: 384 LVDGGSVPREYTYKLVCDALNAAEE 408
           ++  G  P   T + +   L + EE
Sbjct: 642 MISSGVYPDTITIRNMLTGLWSKEE 666



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 36/255 (14%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G  ++A      M + +  PDV  YN +INA  + G F +A  L ++M   G    P+  
Sbjct: 304 GRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI--IPNTI 361

Query: 243 TYTILISSYCK-----------YGMQT-GCRKAI------------RRRIWEANHLFRLM 278
           TY+ +I  +CK           Y M T GC   +             +RI +   L   M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
              G V D   YN LI G      +  AL+L  +M   G  P+ VT ++ +       ++
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481

Query: 339 DKAIEMMRKMQN----------LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             A+EM + MQ            N   P   +Y  +I  L   G+ LEA +   E+   G
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRG 541

Query: 389 SVPREYTYKLVCDAL 403
            VP   TY  + D L
Sbjct: 542 IVPDTITYSSMIDGL 556



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 61/284 (21%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR------- 216
           G +  T + + +I    ++  ++ A   FY M    C P++  +N +I+  C        
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 217 ----------------------------VGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
                                       VG+ N A  LL++M   G  C PD+ T   L+
Sbjct: 415 MELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL-C-PDIVTCDTLL 472

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLML-----------FKGFVPDVVAYNCLIDGC 297
              C  G           ++ +A  +F++M            F G  PDV  YN LI G 
Sbjct: 473 DGLCDNG-----------KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
               +   A EL+++M  +G +P+ +TY+S I      + +D+A +M   M + +   P 
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFS-PN 580

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY-KLVC 400
             ++T +I+  C+AGRV +  +   E+   G V    TY  L+C
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 13/193 (6%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           D S   NG      +   LI  L  EG   EA   +  M      PD   Y+ +I+ LC+
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
               ++A  + + M    F   P+V T+T LI+ YCK G           R+ +   LF 
Sbjct: 559 QSRLDEATQMFDSMGSKSF--SPNVVTFTTLINGYCKAG-----------RVDDGLELFC 605

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M  +G V + + Y  LI G  K   I  AL++F +M   G  P+ +T  + +       
Sbjct: 606 EMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKE 665

Query: 337 EIDKAIEMMRKMQ 349
           E+ +A+ M+ K+Q
Sbjct: 666 ELKRAVAMLEKLQ 678


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 129/281 (45%), Gaps = 41/281 (14%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G +  TS+ + +I  L E   V +A   F  MK     PDVY Y ++I++ C+ G   
Sbjct: 281 GKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIE 340

Query: 222 KARFLLEQM-----------------------ELPGFR----------CPPDVYTYTILI 248
           +AR   ++M                       +LP             CPP+  TY+ L+
Sbjct: 341 QARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALV 400

Query: 249 SSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKG-----FVPDVVAYNCLIDGCCKTYR 302
              CK G +Q  C +   + I  ++++     F+G       P+VV Y  LIDG CK ++
Sbjct: 401 DGLCKAGEIQKAC-EVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHK 459

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +  A EL D M   GC PN + Y++ I  +  V +ID A E+  +M    + +PT  +YT
Sbjct: 460 VVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGY-LPTVHTYT 518

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +I A+ +  R+  A   L+++V+    P   TY  + D L
Sbjct: 519 SLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGL 559



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 16/232 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G ++ A   F RM +    P V+ Y  +I+A+ +    + A  +L QM    
Sbjct: 485 LIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVES- 543

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+V TYT +I   C+ G    C+KA++        L  +M  KG  P+VV Y  LI
Sbjct: 544 -SCTPNVVTYTAMIDGLCRIG---ECQKALK--------LLSMMEEKGCSPNVVTYTALI 591

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K+ +++ +L+LF  M+ KGC PN VTY   I +      +D+A  ++ +M+   + 
Sbjct: 592 DGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQ-TYW 650

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
                 Y  ++     + + + +   L EL   G+VP    Y L+ D  + A
Sbjct: 651 PKYLQGYCSVVQGF--SKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKA 700



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 114/264 (43%), Gaps = 48/264 (18%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L T  + T LI  + ++  ++ A+    +M +  C P+V  Y  +I+ LCR+G   KA
Sbjct: 509 GYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKA 568

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LL  ME  G  C P+V TYT LI    K G           ++  +  LF  M  KG 
Sbjct: 569 LKLLSMMEEKG--CSPNVVTYTALIDGLGKSG-----------KVDLSLQLFIQMSTKGC 615

Query: 284 VPDVVAYNCLIDGCCKTYRIERA---------------------------------LELF 310
            P+ V Y  LI+ CC    ++ A                                 L L 
Sbjct: 616 APNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLL 675

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS--YTPIIHAL 368
           +++   G +P    Y   I  +S    +++A+E+ ++M  L+  +  +S   YT +I AL
Sbjct: 676 EELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQAL 735

Query: 369 CEAGRVLEARDFLAELVDGGSVPR 392
           C A ++ +A +  +E+   G VP 
Sbjct: 736 CLASQLEKAFELYSEITRKGVVPE 759



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 130/332 (39%), Gaps = 69/332 (20%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           FA+    +G W     M  R + +L  T   T +I  L E  L +EA++  +RM+   C 
Sbjct: 81  FAQALCKEGRWSDALVMIEREDFKL-DTVLCTQMISGLMEASLFDEAISFLHRMRCNSCI 139

Query: 202 PDVYAY-----------------------------------NVVINALCRVGNFNKARFL 226
           P+V  Y                                   N ++++ C   ++  A  L
Sbjct: 140 PNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKL 199

Query: 227 LEQMELPGFRCPPDVYTYTILISSYC---------------KYGMQTGCRKAIRRRIWEA 271
           L++M   G  CPP    Y I I S C               K   +      +  ++  A
Sbjct: 200 LKRMADCG--CPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTA 257

Query: 272 N---------------HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
           N                + ++M+ KGFVPD   Y+ +I   C+  ++E+A  LF +M   
Sbjct: 258 NFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSV 317

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           G  P+  TY   I  +     I++A     +M+++        +YT ++HA  +A ++ +
Sbjct: 318 GVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANV-VTYTALLHAYLKAKQLPQ 376

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           A D    ++D G  P   TY  + D L  A E
Sbjct: 377 ASDIFNRMIDAGCPPNTITYSALVDGLCKAGE 408



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 16/173 (9%)

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC +G F+ A  +++ M   GF   PD  TY+ +I+  C+             ++ +A  
Sbjct: 263 LCGMGKFDMAFQIIKVMMGKGF--VPDTSTYSKVITFLCE-----------AMKVEKAFL 309

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF+ M   G  PDV  Y  LID  CK   IE+A   FD+M   GC  N VTY + +  Y 
Sbjct: 310 LFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYL 369

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELV 385
              ++ +A ++  +M  ++ G P ++ +Y+ ++  LC+AG + +A +   +L+
Sbjct: 370 KAKQLPQASDIFNRM--IDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLI 420



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 47/225 (20%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L  M  +G    V T   T LI  LG+ G V+ +L  F +M    C P+   Y V+IN 
Sbjct: 571 LLSMMEEKGCSPNVVT--YTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINH 628

Query: 214 LCRVGNFNKARFLLEQM-------------------------------ELPGFRCPPDVY 242
            C  G  ++A  LL +M                               EL      P   
Sbjct: 629 CCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAP 688

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA---YNCLIDGCCK 299
            Y +LI ++ K G           R+ EA  L + M+      ++ +   Y  LI   C 
Sbjct: 689 VYGLLIDNFSKAG-----------RLEEALELHKEMMELSSSLNITSKDMYTSLIQALCL 737

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
             ++E+A EL+ ++ +KG +P    +   I+    VN+ ++A+++
Sbjct: 738 ASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQL 782



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 82/210 (39%), Gaps = 25/210 (11%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            +K F  RP    YN ++  L   G  +    + ++M   GF    D +T      + CK
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGF--CMDKFTVGCFAQALCK 87

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGF---------------------VPDVVAYNC 292
            G  +     I R  ++ + +    +  G                      +P+VV Y  
Sbjct: 88  EGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRT 147

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+ G  K  ++     + + M K+GC PN   +NS +  Y    +   A +++++M +  
Sbjct: 148 LLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCG 207

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
              P   +Y   I ++C  G  L + D LA
Sbjct: 208 CP-PGYVAYNIFIGSIC-GGEELPSPDLLA 235


>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 596

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 132/284 (46%), Gaps = 16/284 (5%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           N    F+ W  +   + H+    K M  +F++      +W  L++M R+ N  L+T+   
Sbjct: 121 NLGYRFFVWASKQPGYRHSYENYKAMVKIFSKMRQFGAVWALLEEM-RKDNSVLITSELF 179

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             LI+      LV +A+     M ++ C PD Y +  +++ALC+ G+  +A  L E M +
Sbjct: 180 IVLIRRFASARLVEKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKQAASLFEDMRV 239

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              R  P +  +T L+  +C+ G           ++ EA H+   M   GF PD+V +N 
Sbjct: 240 ---RFSPSLRHFTSLLYGWCREG-----------KLIEAKHVLVQMREAGFEPDIVVFNN 285

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+       ++  A +L  +M +KGC PN  +Y   I+ +    ++D+A+ +  +M+   
Sbjct: 286 LLSAYSMAGKMTDAFDLLKEMVRKGCEPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTG 345

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
                  +YT +I   C+ G++      L  +   G +P + TY
Sbjct: 346 CEADV-VTYTALISGFCKWGKINRGYQILDAMKQKGHMPNQLTY 388



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 105/241 (43%), Gaps = 31/241 (12%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+      G + +A      M +  C P+  +Y ++I A C     ++A  +  +ME  G
Sbjct: 286 LLSAYSMAGKMTDAFDLLKEMVRKGCEPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTG 345

Query: 235 FRCPPDVYTYTILISSYCKYG-MQTGCR--KAIRRRIWEANHLFRL-------------- 277
             C  DV TYT LIS +CK+G +  G +   A++++    N L  L              
Sbjct: 346 --CEADVVTYTALISGFCKWGKINRGYQILDAMKQKGHMPNQLTYLRILLAHEKKEELEE 403

Query: 278 -------MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
                  M   G VPD+  YN +I   CK   +++ ++++++M      P   T+   I 
Sbjct: 404 CLELIESMRMVGCVPDLSIYNVVIRLACKLGEVKQGVQIWNEMEASDFSPELDTFVIMIH 463

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY---TPIIHALCEAGRVLEARDFLAELVDG 387
            +     + +A E  ++M  +  G+ T+  Y     +++AL    ++  A+D  + +V  
Sbjct: 464 GFLGQGCLVEACEYFKEM--IGRGLLTTPQYGILKELLNALLRGEKLGMAKDVWSCIVTK 521

Query: 388 G 388
           G
Sbjct: 522 G 522



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 83/194 (42%), Gaps = 20/194 (10%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M+   C PD+  YNVVI   C++G   +   +  +ME   F   P++ T+ I+I  +   
Sbjct: 411 MRMVGCVPDLSIYNVVIRLACKLGEVKQGVQIWNEMEASDF--SPELDTFVIMIHGF--- 465

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFV--PDVVAYNCLIDGCCKTYRIERALELFDD 312
            +  GC       + EA   F+ M+ +G +  P       L++   +  ++  A +++  
Sbjct: 466 -LGQGC-------LVEACEYFKEMIGRGLLTTPQYGILKELLNALLRGEKLGMAKDVWSC 517

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           +  KGC  N   +  +I        + +A      M   +  +P   ++  ++  L    
Sbjct: 518 IVTKGCELNADAWTIWIHSLFSNGHVKEACSYCLDMMEADI-MPKPETFAKLMRGL---- 572

Query: 373 RVLEARDFLAELVD 386
           R L  R+F AE+ +
Sbjct: 573 RKLYNREFAAEITE 586


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 26/263 (9%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +I  L ++G  ++A   F  M++    PD++ YN +I   C  G ++ A  LL++M  
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM-- 316

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +  PDV TY  LI+++ K G           + +EA  L+  ML +G +P+ + Y+ 
Sbjct: 317 LERKISPDVVTYNALINAFVKEG-----------KFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +IDG CK  R++ A  +F  M  KGC PN +T+N+ I  Y     ID  +E++ +M    
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
             V  +++Y  +IH     G +  A D L E++  G  P   T    CD L       L 
Sbjct: 426 L-VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVT----CDTL----LDGLC 476

Query: 413 DDGLRKRIRDGIEYRFRQVMKVK 435
           D+G   +++D +E  F+ + K K
Sbjct: 477 DNG---KLKDALEM-FKVMQKSK 495



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 132/276 (47%), Gaps = 39/276 (14%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L  E  V+EAL  F++M +  CRP+V  +  ++N LCR G   +A  LL++M   G
Sbjct: 155 LLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P   TY  ++   CK G  T     + R++ E +H+         +P+VV Y+ +I
Sbjct: 215 LQ--PTQITYGTIVDGMCKKG-DTVSALNLLRKMEEVSHI---------IPNVVIYSAII 262

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK  R   A  LF +M +KG  P+  TYNS I  +        A +++++M  L   
Sbjct: 263 DSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM--LERK 320

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA------LNAAE 407
           + P   +Y  +I+A  + G+  EA +   E++  G +P   TY  + D       L+AAE
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 408 -----------EPSL-----LDDGL--RKRIRDGIE 425
                       P+L     L DG    KRI DG+E
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME 416



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 17/236 (7%)

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           ++ + +M++ + R D+Y++ ++I   C       A     ++   G    PDV T+  L+
Sbjct: 99  ISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLH--PDVVTFNTLL 156

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
              C           +  R+ EA +LF  M      P+VV +  L++G C+  RI  A+ 
Sbjct: 157 HGLC-----------VEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVA 205

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           L D M + G  P ++TY + +       +   A+ ++RKM+ ++H +P    Y+ II +L
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSL 265

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRI 420
           C+ GR  +A++   E+ + G  P  +TY  +    C +   ++   LL + L ++I
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 112/265 (42%), Gaps = 23/265 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L +M+    G +  T++   LI      G +N AL     M      PD+   + +++
Sbjct: 416 ELLHEMTE--TGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLD 473

Query: 213 ALCRVGNFNKARFLLEQME---------LPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
            LC  G    A  + + M+          P     PDV TY ILIS     G        
Sbjct: 474 GLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG-------- 525

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              +  EA  L+  M  +G VPD + Y+ +IDG CK  R++ A ++FD M  K   PN V
Sbjct: 526 ---KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVV 582

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           T+ + I  Y     +D  +E+  +M      V  + +Y  +I    + G +  A D   E
Sbjct: 583 TFTTLINGYCKAGRVDDGLELFCEMGRRGI-VANAITYITLICGFRKVGNINGALDIFQE 641

Query: 384 LVDGGSVPREYTYKLVCDALNAAEE 408
           ++  G  P   T + +   L + EE
Sbjct: 642 MISSGVYPDTITIRNMLTGLWSKEE 666



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 36/255 (14%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G  ++A      M + +  PDV  YN +INA  + G F +A  L ++M   G    P+  
Sbjct: 304 GRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI--IPNTI 361

Query: 243 TYTILISSYCK-----------YGMQT-GCRKAI------------RRRIWEANHLFRLM 278
           TY+ +I  +CK           Y M T GC   +             +RI +   L   M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
              G V D   YN LI G      +  AL+L  +M   G  P+ VT ++ +       ++
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481

Query: 339 DKAIEMMRKMQN----------LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             A+EM + MQ            N   P   +Y  +I  L   G+ LEA +   E+   G
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRG 541

Query: 389 SVPREYTYKLVCDAL 403
            VP   TY  + D L
Sbjct: 542 IVPDTITYSSMIDGL 556



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 61/284 (21%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR------- 216
           G +  T + + +I    ++  ++ A   FY M    C P++  +N +I+  C        
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 217 ----------------------------VGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
                                       VG+ N A  LL++M   G  C PD+ T   L+
Sbjct: 415 MELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL-C-PDIVTCDTLL 472

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLML-----------FKGFVPDVVAYNCLIDGC 297
              C  G           ++ +A  +F++M            F G  PDV  YN LI G 
Sbjct: 473 DGLCDNG-----------KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
               +   A EL+++M  +G +P+ +TY+S I      + +D+A +M   M + +   P 
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFS-PN 580

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY-KLVC 400
             ++T +I+  C+AGRV +  +   E+   G V    TY  L+C
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 13/193 (6%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           D S   NG      +   LI  L  EG   EA   +  M      PD   Y+ +I+ LC+
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
               ++A  + + M    F   P+V T+T LI+ YCK G           R+ +   LF 
Sbjct: 559 QSRLDEATQMFDSMGSKSF--SPNVVTFTTLINGYCKAG-----------RVDDGLELFC 605

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M  +G V + + Y  LI G  K   I  AL++F +M   G  P+ +T  + +       
Sbjct: 606 EMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKE 665

Query: 337 EIDKAIEMMRKMQ 349
           E+ +A+ M+ K+Q
Sbjct: 666 ELKRAVAMLEKLQ 678


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 26/263 (9%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +I  L ++G  ++A   F  M++    PD++ YN +I   C  G ++ A  LL++M  
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM-- 316

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +  PDV TY  LI+++ K G           + +EA  L+  ML +G +P+ + Y+ 
Sbjct: 317 LERKISPDVVTYNALINAFVKEG-----------KFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +IDG CK  R++ A  +F  M  KGC PN +T+N+ I  Y     ID  +E++ +M    
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
             V  +++Y  +IH     G +  A D L E++  G  P   T    CD L       L 
Sbjct: 426 L-VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVT----CDTL----LDGLC 476

Query: 413 DDGLRKRIRDGIEYRFRQVMKVK 435
           D+G   +++D +E  F+ + K K
Sbjct: 477 DNG---KLKDALEM-FKVMQKSK 495



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 134/280 (47%), Gaps = 39/280 (13%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L+  L  E  V+EAL  F++M +  CRP+V  +  ++N LCR G   +A  LL++M
Sbjct: 151 TFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRM 210

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +  P   TY  ++   CK G  T     + R++ E +H+         +P+VV Y
Sbjct: 211 MEDGLQ--PTQITYGTIVDGMCKKG-DTVSALNLLRKMEEVSHI---------IPNVVIY 258

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + +ID  CK  R   A  LF +M +KG  P+  TYNS I  +        A +++++M  
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM-- 316

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA------L 403
           L   + P   +Y  +I+A  + G+  EA +   E++  G +P   TY  + D       L
Sbjct: 317 LERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRL 376

Query: 404 NAAE-----------EPSL-----LDDGL--RKRIRDGIE 425
           +AAE            P+L     L DG    KRI DG+E
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME 416



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 114/236 (48%), Gaps = 17/236 (7%)

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           ++ + +M++ + R D+Y++N++I   C       A     ++   G    PDV T+T L+
Sbjct: 99  ISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLH--PDVVTFTTLL 156

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
              C           +  R+ EA   F  M      P+VV +  L++G C+  RI  A+ 
Sbjct: 157 HGLC-----------VEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVA 205

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           L D M + G  P ++TY + +       +   A+ ++RKM+ ++H +P    Y+ II +L
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSL 265

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRI 420
           C+ GR  +A++   E+ + G  P  +TY  +    C +   ++   LL + L ++I
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 112/265 (42%), Gaps = 23/265 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L +M+    G +  T++   LI      G +N AL     M      PD+   + +++
Sbjct: 416 ELLHEMTE--TGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLD 473

Query: 213 ALCRVGNFNKARFLLEQME---------LPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
            LC  G    A  + + M+          P     PDV TY ILIS     G        
Sbjct: 474 GLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG-------- 525

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              +  EA  L+  M  +G VPD + Y+ +IDG CK  R++ A ++FD M  K   PN V
Sbjct: 526 ---KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVV 582

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           T+ + I  Y     +D  +E+  +M      V  + +Y  +I    + G +  A D   E
Sbjct: 583 TFTTLINGYCKAGRVDDGLELFCEMGRRGI-VANAITYITLICGFRKVGNINGALDIFQE 641

Query: 384 LVDGGSVPREYTYKLVCDALNAAEE 408
           ++  G  P   T + +   L + EE
Sbjct: 642 MISSGVYPDTITIRNMLTGLWSKEE 666



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 36/255 (14%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G  ++A      M + +  PDV  YN +INA  + G F +A  L ++M   G    P+  
Sbjct: 304 GRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI--IPNTI 361

Query: 243 TYTILISSYCK-----------YGMQT-GCRKAI------------RRRIWEANHLFRLM 278
           TY+ +I  +CK           Y M T GC   +             +RI +   L   M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
              G V D   YN LI G      +  AL+L  +M   G  P+ VT ++ +       ++
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481

Query: 339 DKAIEMMRKMQN----------LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             A+EM + MQ            N   P   +Y  +I  L   G+ LEA +   E+   G
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRG 541

Query: 389 SVPREYTYKLVCDAL 403
            VP   TY  + D L
Sbjct: 542 IVPDTITYSSMIDGL 556



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 61/284 (21%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR------- 216
           G +  T + + +I    ++  ++ A   FY M    C P++  +N +I+  C        
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 217 ----------------------------VGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
                                       VG+ N A  LL++M   G  C PD+ T   L+
Sbjct: 415 MELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL-C-PDIVTCDTLL 472

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLML-----------FKGFVPDVVAYNCLIDGC 297
              C  G           ++ +A  +F++M            F G  PDV  YN LI G 
Sbjct: 473 DGLCDNG-----------KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
               +   A EL+++M  +G +P+ +TY+S I      + +D+A +M   M + +   P 
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFS-PN 580

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY-KLVC 400
             ++T +I+  C+AGRV +  +   E+   G V    TY  L+C
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 13/193 (6%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           D S   NG      +   LI  L  EG   EA   +  M      PD   Y+ +I+ LC+
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
               ++A  + + M    F   P+V T+T LI+ YCK G           R+ +   LF 
Sbjct: 559 QSRLDEATQMFDSMGSKSF--SPNVVTFTTLINGYCKAG-----------RVDDGLELFC 605

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M  +G V + + Y  LI G  K   I  AL++F +M   G  P+ +T  + +       
Sbjct: 606 EMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKE 665

Query: 337 EIDKAIEMMRKMQ 349
           E+ +A+ M+ K+Q
Sbjct: 666 ELKRAVAMLEKLQ 678


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 26/263 (9%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +I  L ++G  ++A   F  M++    PD++ YN +I   C  G ++ A  LL++M  
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM-- 316

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +  PDV TY  LI+++ K G           + +EA  L+  ML +G +P+ + Y+ 
Sbjct: 317 LERKISPDVVTYNALINAFVKEG-----------KFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +IDG CK  R++ A  +F  M  KGC PN +T+N+ I  Y     ID  +E++ +M    
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
             V  +++Y  +IH     G +  A D L E++  G  P   T    CD L       L 
Sbjct: 426 L-VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVT----CDTL----LDGLC 476

Query: 413 DDGLRKRIRDGIEYRFRQVMKVK 435
           D+G   +++D +E  F+ + K K
Sbjct: 477 DNG---KLKDALEM-FKVMQKSK 495



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 134/280 (47%), Gaps = 39/280 (13%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L+  L  E  V+EAL  F++M +  CRP+V  +  ++N LCR G   +A  LL++M
Sbjct: 151 TFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRM 210

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +  P   TY  ++   CK G  T     + R++ E +H+         +P+VV Y
Sbjct: 211 MEDGLQ--PTQITYGTIVDGMCKKG-DTVSALNLLRKMEEVSHI---------IPNVVIY 258

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + +ID  CK  R   A  LF +M +KG  P+  TYNS I  +        A +++++M  
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM-- 316

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA------L 403
           L   + P   +Y  +I+A  + G+  EA +   E++  G +P   TY  + D       L
Sbjct: 317 LERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRL 376

Query: 404 NAAE-----------EPSL-----LDDGL--RKRIRDGIE 425
           +AAE            P+L     L DG    KRI DG+E
Sbjct: 377 DAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME 416



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 116/236 (49%), Gaps = 17/236 (7%)

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           ++ + +M++ + R D+Y++N++I   C       A     ++   G    PDV T+T L+
Sbjct: 99  ISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLH--PDVVTFTTLL 156

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
              C           +  R+ EA +LF  M      P+VV +  L++G C+  RI  A+ 
Sbjct: 157 HGLC-----------VEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVA 205

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           L D M + G  P ++TY + +       +   A+ ++RKM+ ++H +P    Y+ II +L
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSL 265

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRI 420
           C+ GR  +A++   E+ + G  P  +TY  +    C +   ++   LL + L ++I
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 112/265 (42%), Gaps = 23/265 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L +M+    G +  T++   LI      G +N AL     M      PD+   + +++
Sbjct: 416 ELLHEMTE--TGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLD 473

Query: 213 ALCRVGNFNKARFLLEQME---------LPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
            LC  G    A  + + M+          P     PDV TY ILIS     G        
Sbjct: 474 GLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG-------- 525

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              +  EA  L+  M  +G VPD + Y+ +IDG CK  R++ A ++FD M  K   PN V
Sbjct: 526 ---KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVV 582

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           T+ + I  Y     +D  +E+  +M      V  + +Y  +I    + G +  A D   E
Sbjct: 583 TFTTLINGYCKAGRVDDGLELFCEMGRRGI-VANAITYITLICGFRKVGNINGALDIFQE 641

Query: 384 LVDGGSVPREYTYKLVCDALNAAEE 408
           ++  G  P   T + +   L + EE
Sbjct: 642 MISSGVYPDTITIRNMLTGLWSKEE 666



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 36/255 (14%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G  ++A      M + +  PDV  YN +INA  + G F +A  L ++M   G    P+  
Sbjct: 304 GRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI--IPNTI 361

Query: 243 TYTILISSYCK-----------YGMQT-GCRKAI------------RRRIWEANHLFRLM 278
           TY+ +I  +CK           Y M T GC   +             +RI +   L   M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
              G V D   YN LI G      +  AL+L  +M   G  P+ VT ++ +       ++
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481

Query: 339 DKAIEMMRKMQN----------LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             A+EM + MQ            N   P   +Y  +I  L   G+ LEA +   E+   G
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRG 541

Query: 389 SVPREYTYKLVCDAL 403
            VP   TY  + D L
Sbjct: 542 IVPDTITYSSMIDGL 556



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 61/284 (21%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR------- 216
           G +  T + + +I    ++  ++ A   FY M    C P++  +N +I+  C        
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 217 ----------------------------VGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
                                       VG+ N A  LL++M   G  C PD+ T   L+
Sbjct: 415 MELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL-C-PDIVTCDTLL 472

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLML-----------FKGFVPDVVAYNCLIDGC 297
              C  G           ++ +A  +F++M            F G  PDV  YN LI G 
Sbjct: 473 DGLCDNG-----------KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
               +   A EL+++M  +G +P+ +TY+S I      + +D+A +M   M + +   P 
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFS-PN 580

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY-KLVC 400
             ++T +I+  C+AGRV +  +   E+   G V    TY  L+C
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 13/193 (6%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           D S   NG      +   LI  L  EG   EA   +  M      PD   Y+ +I+ LC+
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
               ++A  + + M    F   P+V T+T LI+ YCK G           R+ +   LF 
Sbjct: 559 QSRLDEATQMFDSMGSKSF--SPNVVTFTTLINGYCKAG-----------RVDDGLELFC 605

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M  +G V + + Y  LI G  K   I  AL++F +M   G  P+ +T  + +       
Sbjct: 606 EMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKE 665

Query: 337 EIDKAIEMMRKMQ 349
           E+ +A+ M+ K+Q
Sbjct: 666 ELKRAVAMLEKLQ 678


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 126/260 (48%), Gaps = 24/260 (9%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           +K   +   +M RRG+   V   S   +I  L + G  + A+  F +M+Q  C+PDV  Y
Sbjct: 174 IKEAVELFNEMVRRGHEPNVI--SYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTY 231

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           N +I++LC+    N A   L +M   G   PP+V+TY  ++  +C  G           +
Sbjct: 232 NTIIDSLCKDRLVNDAMEFLSEMLDRGI--PPNVFTYNCMVHGFCILG-----------Q 278

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + EA  LF+ M+ +  +PD V    L+DG CK   +  A  +F+ M +KG  PN  TYN+
Sbjct: 279 LNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNA 338

Query: 328 FIRYYS---VVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAE 383
            +  Y    ++NE  K  E+M     +  G  P   SY  +I+  C++ R+ EA+  LAE
Sbjct: 339 LMDGYCLQRLMNEAKKVFEIM-----IRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAE 393

Query: 384 LVDGGSVPREYTYKLVCDAL 403
           +      P   TY  +   L
Sbjct: 394 MYHKALNPDTVTYSTLMQGL 413



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 123/255 (48%), Gaps = 14/255 (5%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T ++T L+  L +EG+V+EA   F  M +    P++  YN +++  C     N+A+ + E
Sbjct: 298 TVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFE 357

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M   G  C P V++Y ILI+ +CK            RR+ EA  L   M  K   PD V
Sbjct: 358 IMIRQG--CAPGVHSYNILINGFCK-----------SRRMDEAKSLLAEMYHKALNPDTV 404

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y+ L+ G C+  R + AL +F +M   G +PN VTY+  +  +     +D+A+++++ M
Sbjct: 405 TYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSM 464

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           Q      P    +T +I  +  AG++  A++  ++L   G  P   TY ++   L     
Sbjct: 465 QE-KKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGL 523

Query: 409 PSLLDDGLRKRIRDG 423
                D  RK   DG
Sbjct: 524 SDEAYDLFRKMEDDG 538



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 119/255 (46%), Gaps = 51/255 (20%)

Query: 185 VNEALATFYRMKQFRCRP-----------------------------------DVYAYNV 209
           +++ALA+FYRM +   RP                                   +VY+ NV
Sbjct: 69  IDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNV 128

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +IN LCR+ + + A  +L +M   G    P   T+  LI+  C  G           +I 
Sbjct: 129 LINCLCRLNHVDFAVSILGKMFKLGIH--PTASTFNALINGLCNEG-----------KIK 175

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA  LF  M+ +G  P+V++YN +I+G CKT     A+++F  M + GC P+ VTYN+ I
Sbjct: 176 EAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTII 235

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGG 388
                   ++ A+E + +M  L+ G+P +  +Y  ++H  C  G++ EA     E+V   
Sbjct: 236 DSLCKDRLVNDAMEFLSEM--LDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRD 293

Query: 389 SVPREYTYKLVCDAL 403
            +P   T  ++ D L
Sbjct: 294 VMPDTVTLTILVDGL 308



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 14/232 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S+  LI  L     V+ A++   +M +    P    +N +IN LC  G   +A  L  +M
Sbjct: 125 SLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEM 184

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P+V +Y  +I+  CK G               A  +F+ M   G  PDVV Y
Sbjct: 185 VRRGHE--PNVISYNTIINGLCKTG-----------NTSMAVDVFKKMEQNGCKPDVVTY 231

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N +ID  CK   +  A+E   +M  +G  PN  TYN  +  + ++ ++++A  + ++M  
Sbjct: 232 NTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVG 291

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +  +P + + T ++  LC+ G V EAR     + + G  P   TY  + D 
Sbjct: 292 RDV-MPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDG 342



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 13/180 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + L++ L + G   EAL  F  M  +   P++  Y+++++  C+ G+ ++A  LL+
Sbjct: 403 TVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLK 462

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M+    +  P++  +TILI      GM       I  ++  A  LF  +   G  P + 
Sbjct: 463 SMQEK--KLEPNIVHHTILIE-----GM------FIAGKLEVAKELFSKLFADGIRPTIR 509

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  +I G  K    + A +LF  M   G +PN  +YN  I+ +    +   AI ++ +M
Sbjct: 510 TYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEM 569



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 16/189 (8%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + + L+    + G ++EAL     M++ +  P++  + ++I  +   G    A
Sbjct: 433 GLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVA 492

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           + L  ++   G R  P + TYT++I    K G+             EA  LFR M   GF
Sbjct: 493 KELFSKLFADGIR--PTIRTYTVMIKGLLKEGLSD-----------EAYDLFRKMEDDGF 539

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS---VVNEIDK 340
           +P+  +YN +I G  +      A+ L D+M  K    N  T+   +   S   ++++  +
Sbjct: 540 LPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLDLESQDEIISQFMR 599

Query: 341 AIEMMRKMQ 349
                RKM+
Sbjct: 600 GSSQGRKMK 608



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 3/140 (2%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P V  +   +    K  +    + L + M+  G   N  + N  I     +N +D A+ +
Sbjct: 86  PSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSI 145

Query: 345 MRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + KM  L  G+ PT+S++  +I+ LC  G++ EA +   E+V  G  P   +Y  + + L
Sbjct: 146 LGKMFKL--GIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGL 203

Query: 404 NAAEEPSLLDDGLRKRIRDG 423
                 S+  D  +K  ++G
Sbjct: 204 CKTGNTSMAVDVFKKMEQNG 223


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 26/263 (9%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +I  L ++G  ++A   F  M++    PD++ YN +I   C  G ++ A  LL++M  
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM-- 316

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +  PDV TY  LI+++ K G           + +EA  L+  ML +G +P+ + Y+ 
Sbjct: 317 LERKISPDVVTYNALINAFVKEG-----------KFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +IDG CK  R++ A  +F  M  KGC PN +T+N+ I  Y     ID  +E++ +M    
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
             V  +++Y  +IH     G +  A D L E++  G  P   T    CD L       L 
Sbjct: 426 L-VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVT----CDTL----LDGLC 476

Query: 413 DDGLRKRIRDGIEYRFRQVMKVK 435
           D+G   +++D +E  F+ + K K
Sbjct: 477 DNG---KLKDALEM-FKVMQKSK 495



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 132/276 (47%), Gaps = 39/276 (14%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L  E  V+EAL  F++M +  CRP+V  +  ++N LCR G   +A  LL++M   G
Sbjct: 155 LLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDG 214

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P   TY  ++   CK G  T     + R++ E +H+         +P+VV Y+ +I
Sbjct: 215 LQ--PTQITYGTIVDGMCKKG-DTVSALNLLRKMEEVSHI---------IPNVVIYSAII 262

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK  R   A  LF +M +KG  P+  TYNS I  +        A +++++M  L   
Sbjct: 263 DSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEM--LERK 320

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA------LNAAE 407
           + P   +Y  +I+A  + G+  EA +   E++  G +P   TY  + D       L+AAE
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 408 -----------EPSL-----LDDGL--RKRIRDGIE 425
                       P+L     L DG    KRI DG+E
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGME 416



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 17/236 (7%)

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           ++ + +M++ + R D+Y++ ++I   C       A     ++   G    PDV T+  L+
Sbjct: 99  ISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLH--PDVVTFNTLL 156

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
              C           +  R+ EA +LF  M      P+VV +  L++G C+  RI  A+ 
Sbjct: 157 HGLC-----------VEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVA 205

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           L D M + G  P ++TY + +       +   A+ ++RKM+ ++H +P    Y+ II +L
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSL 265

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRI 420
           C+ GR  +A++   E+ + G  P  +TY  +    C +   ++   LL + L ++I
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKI 321



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 112/265 (42%), Gaps = 23/265 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L +M+    G +  T++   LI      G +N AL     M      PD+   + +++
Sbjct: 416 ELLHEMTE--TGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLD 473

Query: 213 ALCRVGNFNKARFLLEQME---------LPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
            LC  G    A  + + M+          P     PDV TY ILIS     G        
Sbjct: 474 GLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEG-------- 525

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              +  EA  L+  M  +G VPD + Y+ +IDG CK  R++ A ++FD M  K   PN V
Sbjct: 526 ---KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVV 582

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           T+ + I  Y     +D  +E+  +M      V  + +Y  +I    + G +  A D   E
Sbjct: 583 TFTTLINGYCKAGRVDDGLELFCEMGRRGI-VANAITYITLICGFRKVGNINGALDIFQE 641

Query: 384 LVDGGSVPREYTYKLVCDALNAAEE 408
           ++  G  P   T + +   L + EE
Sbjct: 642 MISSGVYPDTITIRNMLTGLWSKEE 666



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 36/255 (14%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G  ++A      M + +  PDV  YN +INA  + G F +A  L ++M   G    P+  
Sbjct: 304 GRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGI--IPNTI 361

Query: 243 TYTILISSYCK-----------YGMQT-GCRKAI------------RRRIWEANHLFRLM 278
           TY+ +I  +CK           Y M T GC   +             +RI +   L   M
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEM 421

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
              G V D   YN LI G      +  AL+L  +M   G  P+ VT ++ +       ++
Sbjct: 422 TETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481

Query: 339 DKAIEMMRKMQN----------LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             A+EM + MQ            N   P   +Y  +I  L   G+ LEA +   E+   G
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRG 541

Query: 389 SVPREYTYKLVCDAL 403
            VP   TY  + D L
Sbjct: 542 IVPDTITYSSMIDGL 556



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 61/284 (21%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR------- 216
           G +  T + + +I    ++  ++ A   FY M    C P++  +N +I+  C        
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 217 ----------------------------VGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
                                       VG+ N A  LL++M   G  C PD+ T   L+
Sbjct: 415 MELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL-C-PDIVTCDTLL 472

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLML-----------FKGFVPDVVAYNCLIDGC 297
              C  G           ++ +A  +F++M            F G  PDV  YN LI G 
Sbjct: 473 DGLCDNG-----------KLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
               +   A EL+++M  +G +P+ +TY+S I      + +D+A +M   M + +   P 
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFS-PN 580

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY-KLVC 400
             ++T +I+  C+AGRV +  +   E+   G V    TY  L+C
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 13/193 (6%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           D S   NG      +   LI  L  EG   EA   +  M      PD   Y+ +I+ LC+
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 558

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
               ++A  + + M    F   P+V T+T LI+ YCK G           R+ +   LF 
Sbjct: 559 QSRLDEATQMFDSMGSKSF--SPNVVTFTTLINGYCKAG-----------RVDDGLELFC 605

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M  +G V + + Y  LI G  K   I  AL++F +M   G  P+ +T  + +       
Sbjct: 606 EMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKE 665

Query: 337 EIDKAIEMMRKMQ 349
           E+ +A+ M+ K+Q
Sbjct: 666 ELKRAVAMLEKLQ 678


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 122/242 (50%), Gaps = 14/242 (5%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G   TT S   LI  L +   ++E       M++ R  PDV+ Y+V+I+ LC+ G  
Sbjct: 250 RKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRL 309

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           + A  L ++M+  G R  P+  T+T LI    +            RR+  A + +  ML 
Sbjct: 310 DVAEQLFDEMQQRGLR--PNGITFTALIDGQYR-----------SRRMDSAMNTYHQMLT 356

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  PD+V YN L++G CK   + +A +L D+M   G  P+++TY + I  Y    +++ 
Sbjct: 357 MGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLES 416

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A+E +RK  N    V  + ++T +I   C  GRV +A   L E+V+ G  P + TY +V 
Sbjct: 417 AME-IRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVI 475

Query: 401 DA 402
           D 
Sbjct: 476 DG 477



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 24/268 (8%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE      R +  + L+D ++    R NG      + T LI        ++ A+ T+++
Sbjct: 304 CKE-----GRLDVAEQLFDEMQQRGLRPNG-----ITFTALIDGQYRSRRMDSAMNTYHQ 353

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M     +PD+  YN ++N LC+VG+ NKAR L+++M++ G +  PD  TYT LI  YCK 
Sbjct: 354 MLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMK--PDKITYTTLIDGYCKE 411

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G            +  A  + + M  +G V D VA+  LI G C+  R+  A     +M 
Sbjct: 412 G-----------DLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMV 460

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           + G  P+  TY   I  Y     +    +++++MQ +N   P   +Y  +++ LC+ G++
Sbjct: 461 EAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQ-INGHKPGVITYNVLMNGLCKQGQM 519

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDA 402
             A   L  +++ G  P + TY ++ + 
Sbjct: 520 KNANMLLEAMLNLGVTPDDITYNILLEG 547



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 16/170 (9%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G ++   + T LI     +G V +A  T   M +   +PD   Y +VI+  C+ GN    
Sbjct: 428 GVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMG 487

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LL++M++ G +  P V TY +L++  CK G           ++  AN L   ML  G 
Sbjct: 488 FKLLKEMQINGHK--PGVITYNVLMNGLCKQG-----------QMKNANMLLEAMLNLGV 534

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
            PD + YN L++G CK  + E  L+L    N+KG I +   Y S +  Y+
Sbjct: 535 TPDDITYNILLEGHCKNGKAEDLLKL---RNEKGLIVDYAYYTSLVSEYN 581


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 120/243 (49%), Gaps = 16/243 (6%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G L      + L+  L   G + EAL  F  M+      DVY YN +I+ L R G + 
Sbjct: 174 GAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWK 233

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +  + L  M   GF   PD +T+TILI   CK G           ++ EA  +  LM  K
Sbjct: 234 EVTWFLNLMVDRGF--SPDAFTFTILIDGLCKEG-----------KVGEAQQILELMHHK 280

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G  PD++ YN L++G C   ++E A +LF+ +  +G   N  +YN  I  Y    +ID+A
Sbjct: 281 GKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEA 340

Query: 342 IEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
             +  +M+    G+ P++ +Y  +I ALC++GRV  A+    E+   G   +  TY ++ 
Sbjct: 341 FRLFEEMR--PKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLL 398

Query: 401 DAL 403
           D L
Sbjct: 399 DGL 401



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 112/233 (48%), Gaps = 15/233 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +VT L+K +  E  + +A+  F  M +     D   Y ++IN LC+      A  L E+M
Sbjct: 79  TVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKM 138

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +     C  DV+TY ++I S CK GM T           EA  +F  M+  G +PDVV Y
Sbjct: 139 K---GNCKGDVFTYGMIIDSLCKDGMTT-----------EALDMFSEMIGAGILPDVVVY 184

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + L+DG C+  R++ ALE F +M  +G   +  TYNS I   S      +    +  M +
Sbjct: 185 SSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVD 244

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                P + ++T +I  LC+ G+V EA+  L  +   G  P   TY  + + L
Sbjct: 245 RGFS-PDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGL 296



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 114/258 (44%), Gaps = 20/258 (7%)

Query: 150 GLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           GLW     FL  M  RG      T   T LI  L +EG V EA      M      PD+ 
Sbjct: 230 GLWKEVTWFLNLMVDRGFSPDAFT--FTILIDGLCKEGKVGEAQQILELMHHKGKEPDIL 287

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            YN ++N LC VG    A  L E +   G +   +V++Y ILI+ YCK            
Sbjct: 288 TYNTLMNGLCLVGQLEDATKLFESLADRGIKL--NVFSYNILINGYCK-----------D 334

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           ++I EA  LF  M  KG  P  V YN LI   C++ R+  A +LF +M   G      TY
Sbjct: 335 QKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTY 394

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              +        +++AI++ + ++   H  P    ++ ++  +C AG++ EA     E+ 
Sbjct: 395 CVLLDGLCKNGHLEEAIDLFQSIKKTEHK-PNIEVFSILLDGMCRAGKLEEAWKQFDEIS 453

Query: 386 DGGSVPREYTYKLVCDAL 403
             G  P    Y ++ + L
Sbjct: 454 KNGLEPDTIAYNILINGL 471



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 21/208 (10%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           +T +   LI  L + G V  A   F  M+       +  Y V+++ LC+ G+  +A  L 
Sbjct: 355 STVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLF 414

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           + ++    +  P++  ++IL+   C+ G           ++ EA   F  +   G  PD 
Sbjct: 415 QSIKKTEHK--PNIEVFSILLDGMCRAG-----------KLEEAWKQFDEISKNGLEPDT 461

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           +AYN LI+G C    +  A++L   M +KGC+P+ +T+N  I+     NEI +AI+++ +
Sbjct: 462 IAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEE 521

Query: 348 MQNLNHGVPTS--------SSYTPIIHA 367
           M+N N     +        +S+ P  HA
Sbjct: 522 MRNRNFSPDEAVTSMLLCLASFDPQWHA 549



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 2/125 (1%)

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           L +GF PD V    L+ G      I  A++LFD+M +KG   +  TY   I       + 
Sbjct: 69  LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKT 128

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
             AI++  KM+    G     +Y  II +LC+ G   EA D  +E++  G +P    Y  
Sbjct: 129 GLAIKLHEKMKGNCKG--DVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSS 186

Query: 399 VCDAL 403
           + D L
Sbjct: 187 LMDGL 191



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 15/169 (8%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD  T T L+       M+ G   A++        LF  M  KG   D   Y  LI+G C
Sbjct: 75  PDAVTVTTLVKGVW---MENGIPDAVQ--------LFDEMTEKGLFGDAKTYGILINGLC 123

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PT 357
           K  +   A++L + M K  C  +  TY   I          +A++M  +M  +  G+ P 
Sbjct: 124 KARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEM--IGAGILPD 180

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
              Y+ ++  LC  GR+ EA +F  E+   G     YTY  +   L+ A
Sbjct: 181 VVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRA 229



 Score = 45.4 bits (106), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R   ++  W    ++S+  NG    T +   LI  L  +G+++EA+   ++M++  C PD
Sbjct: 438 RAGKLEEAWKQFDEISK--NGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPD 495

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              +NV+I  L +    ++A  LLE+M    F     V +  + ++S+
Sbjct: 496 SITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASF 543


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 134/276 (48%), Gaps = 32/276 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK L ++GLV +AL     M +    PD++ YN+VIN LC++G  + A  LL      G
Sbjct: 369 LIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKG 428

Query: 235 FRCPPDVYTYTILISSYCK----------------YGMQTG-----------CRKAIRRR 267
           +   PD++T+  LI  YCK                +G+              C+ A    
Sbjct: 429 YL--PDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPED 486

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + E    F++++ KG +P+++ YN LI+  CK  ++  AL+L +++  +G IP+ V++ +
Sbjct: 487 VMET---FKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGT 543

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I  +    ++D+A ++ R+M+       T ++Y  +I+A  E   +  A+    E+ D 
Sbjct: 544 VISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDK 603

Query: 388 GSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           G  P  YTY+++ D        +   D L K I  G
Sbjct: 604 GCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIG 639



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 146/345 (42%), Gaps = 37/345 (10%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           KA   ++ V++   F H  +T K M            +   L +M    +  L+    V+
Sbjct: 22  KALSIFNSVKKEDGFKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVDNSLLEGVYVS 81

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            + +  G +G V EA+  F RM  + C P +++YN ++N L   G FN+A  +  +M+  
Sbjct: 82  AM-RNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHE 140

Query: 234 GFRCPPDVYTYTILISSYCKYGM------------QTGCRK------AIRRRIWEANH-- 273
           G    PDV T+TI I S+C+                 GC         +    +E N+  
Sbjct: 141 GI--APDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQV 198

Query: 274 ----LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
               LF  ML  G  P +  +N L+   CK   ++   +L + + K G  PN  T+N FI
Sbjct: 199 EAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFI 258

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGV------PTSSSYTPIIHALCEAGRVLEARDFLAE 383
           +       ++ A   + + +N  H +      P   +Y  II+   + G++ +A   L +
Sbjct: 259 QGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKD 318

Query: 384 LVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRIRDGI 424
               G VP E+TY      VC   +     +L ++ L K ++  I
Sbjct: 319 AKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSI 363



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 21/235 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN-------KARFLL 227
           L+ +L ++G + E      ++ +    P+++ +N+ I  LCR G          +A   L
Sbjct: 222 LMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYL 281

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            +M   G    PD +TY  +I  Y K G           +I +A+ + +   FKGFVPD 
Sbjct: 282 HKMVNKGLE--PDDFTYNTIIYGYSKVG-----------KIQDASRILKDAKFKGFVPDE 328

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI G C+   I+ AL LF++   KG  P+ V YN+ I+  S    + KA+++M  
Sbjct: 329 FTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMND 388

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           M       P   +Y  +I+ LC+ G V +A + L   +  G +P  +T+  + D 
Sbjct: 389 MSKEGMS-PDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDG 442



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 34/269 (12%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           G    V EA    ++M      PD + YN +I    +VG    A  +L+  +  GF   P
Sbjct: 269 GANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGF--VP 326

Query: 240 DVYTYTILISSYCKYG------------MQTGCRKAI------------RRRIWEANHLF 275
           D +TY  LI   C+ G            +  G + +I            +  + +A  L 
Sbjct: 327 DEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLM 386

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             M  +G  PD+  YN +I+G CK   +  A  L +    KG +P+  T+N+ I  Y   
Sbjct: 387 NDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKR 446

Query: 336 NEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
            ++D AI ++  M   +HGV P   +Y  I++ LC+A +  +  +    +++ G +P   
Sbjct: 447 LKMDNAIGILDSM--WSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNII 504

Query: 395 TYKL----VCDALNAAEEPSLLDDGLRKR 419
           TY +    +C A    E   LL++ +R R
Sbjct: 505 TYNILIESLCKARKVTEALDLLEE-IRNR 532



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 108/233 (46%), Gaps = 15/233 (6%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           + + TF  + +  C P++  YN++I +LC+     +A  LLE++   G    PD  ++  
Sbjct: 486 DVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGL--IPDPVSFGT 543

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA-YNCLIDGCCKTYRIER 305
           +IS +C  G            + EA  LFR M  +  +   VA YN +I+   +   ++ 
Sbjct: 544 VISGFCNNG-----------DLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDM 592

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A +LF +M  KGC P+  TY   I  +  V  ++   + + K   +   VP+ +++  +I
Sbjct: 593 AQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGF-VPSLTTFGRVI 651

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRK 418
           + LC   RV EA   +  +V  G VP         D    A    +++D L+K
Sbjct: 652 NCLCVQHRVHEAVGIVHLMVRTGVVPEAVVTIFDADKKAVAAPKIIVEDLLKK 704


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 134/275 (48%), Gaps = 33/275 (12%)

Query: 155 LKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           + +M +RG+   LVT +++   IK   + G    AL     M+   C+PD ++Y  +I  
Sbjct: 448 MNNMLQRGHSANLVTYNTI---IKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK------------YGMQTGCR 261
            C++     A  L  +M   G  CP +V TYT LI  YCK            +  ++GCR
Sbjct: 505 FCKISKMESAFGLFNEMVDDGL-CPNEV-TYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 262 KAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
             ++                 A  L ++M+ +G  P+VV Y  +IDG CK      ALE+
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHAL 368
           F+ M ++GC+PN +TY+S IR      ++++A  +  +++   HG +P   +Y  +I A 
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE--RHGLIPDEITYVKMIEAY 680

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +G+V  A +FL  ++  G  P  +TY ++   L
Sbjct: 681 IMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 118/273 (43%), Gaps = 53/273 (19%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF--------- 235
           ++ AL  F +M +  C P+   Y+ +IN LC  G  N+A  L+ +M L G          
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325

Query: 236 ------------------------RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
                                    C P+VYTYT LIS  C  G+           +  A
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGL-----------LKVA 374

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             LF  M   G  P+ V YN LI+   +  RI+ A  + + M + GC PN VTYN  I+ 
Sbjct: 375 IGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           Y ++ +  KA+ +M  M    H      +Y  II   C++G    A   L  + DGG  P
Sbjct: 435 YCILGDPKKAMLVMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKP 493

Query: 392 REYTY-KLVCDALNAAEEPS-------LLDDGL 416
            E++Y +L+C     ++  S       ++DDGL
Sbjct: 494 DEWSYTELICGFCKISKMESAFGLFNEMVDDGL 526



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 113/266 (42%), Gaps = 16/266 (6%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           MSR  +G    T +   LI +L E   +  A      M +  C P++  YN +I   C +
Sbjct: 381 MSR--DGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCIL 438

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G+  KA  ++  M   G     ++ TY  +I  YC  G  T    A+R        +  L
Sbjct: 439 GDPKKAMLVMNNMLQRGHSA--NLVTYNTIIKGYCDSGNTT---SALR--------ILDL 485

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M   G  PD  +Y  LI G CK  ++E A  LF++M   G  PN VTY + I  Y    +
Sbjct: 486 MRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           +D A  ++  M+  +   P   +Y  +IH L +      A +    +++ G  P   TY 
Sbjct: 546 LDTATSLLEHMKR-SGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYT 604

Query: 398 LVCDALNAAEEPSLLDDGLRKRIRDG 423
            + D L      SL  +   K I  G
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQG 630



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 114/255 (44%), Gaps = 16/255 (6%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           V   +D +++M    +G L T  + T  I  L + G   +A   F  MK   C P+VY Y
Sbjct: 301 VNEAFDLIREMIL--HGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 358

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
             +I+ LC  G    A  L  +M   G    P+  TY  LI+   +            RR
Sbjct: 359 TALISGLCVSGLLKVAIGLFHRMSRDGVF--PNTVTYNALINILVE-----------NRR 405

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           I  A  +  LM   G  P++V YN +I G C     ++A+ + ++M ++G   N VTYN+
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I+ Y        A+ ++  M++     P   SYT +I   C+  ++  A     E+VD 
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRD-GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDD 524

Query: 388 GSVPREYTYKLVCDA 402
           G  P E TY  + D 
Sbjct: 525 GLCPNEVTYTALIDG 539



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 118/274 (43%), Gaps = 18/274 (6%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           W    DM  +G    V T   T LI  L   GL+  A+  F+RM +    P+   YN +I
Sbjct: 340 WRLFVDMKNKGCEPNVYT--YTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI 397

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           N L        A  +L  M   G  C P++ TY  +I  YC  G     +KA+       
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNG--CSPNIVTYNEMIKGYCILGDP---KKAML------ 446

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +   ML +G   ++V YN +I G C +     AL + D M   GC P+  +Y   I  
Sbjct: 447 --VMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
           +  +++++ A  +  +M  ++ G+ P   +YT +I   C+  ++  A   L  +   G  
Sbjct: 505 FCKISKMESAFGLFNEM--VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           P   TY ++   L      S  ++  +  I +GI
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI 596



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 16/251 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK    +  +   ++    + Q   R  ++AY+ ++  L R+G          +M   G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P++  Y  +I++ CK G      + I ++++E+             PD   Y  +I
Sbjct: 211 VQ--PNLLIYNAVINALCKDG-NVADAETIMKKVFESE----------MSPDTFTYTSMI 257

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C+ + ++ AL++F+ M K+GC PN VTY++ I        +++A +++R+M  + HG
Sbjct: 258 LGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM--ILHG 315

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
           + PT+ + T  I ALC+ G   +A     ++ + G  P  YTY  +   L  +    +  
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAI 375

Query: 414 DGLRKRIRDGI 424
               +  RDG+
Sbjct: 376 GLFHRMSRDGV 386



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 81/212 (38%), Gaps = 53/212 (25%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L+T SS   LI+ LG+EG V EA   F  +++    PD   Y  +I A    G    A  
Sbjct: 635 LLTYSS---LIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFN 691

Query: 226 LLEQMELPGFRCPPDVYTYTILISSY--------------------CKYGMQTGCRKAIR 265
            L +M   G  C P ++TY +LI                       C +G QT  + A+ 
Sbjct: 692 FLGRMIKAG--CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVS 749

Query: 266 ----------------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                                        R +EAN L   M+ +G  PD  AYN L+   
Sbjct: 750 VMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSL 809

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            +   ++ A+ +F  M+ +GC  +   Y   I
Sbjct: 810 LRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 16/149 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
            NE L +   + Q  C PD  AYN ++ +L RV N + A  + + M   G  C   +  Y
Sbjct: 783 ANELLGSM--ISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQG--CEVHLNGY 837

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI + C+           RR+  EA   F  ML + + PD V    LIDG  +    +
Sbjct: 838 KELICALCQLH---------RRK--EARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKD 886

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYS 333
             +E    M  +  +P+   Y    R  S
Sbjct: 887 LCMEFLHIMETRRYMPSFHIYTILAREAS 915


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 121/247 (48%), Gaps = 19/247 (7%)

Query: 162 GNGELVTT--SSVTC---LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           GNG    T   ++ C   +I  L ++GL+++    F  MK     PDV AY+ +I+ +C 
Sbjct: 226 GNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCH 285

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
            G +  A+ L  +M   G    P+V T+ +LI + CK G           ++ EANHL +
Sbjct: 286 TGRWEGAKGLFNEMVDEGVH--PNVVTFNVLIDALCKAG-----------KMEEANHLLK 332

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
           LM+ +G  PD   YN LIDG C   RI+ A +LF  M  KG   + V+YN  I  Y    
Sbjct: 333 LMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSG 392

Query: 337 EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            + +A ++ R+M      +PT  +Y  ++  L   G+V +A +   E+      P   TY
Sbjct: 393 RMVEAKKLYREMM-CKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTY 451

Query: 397 KLVCDAL 403
            ++ D L
Sbjct: 452 NILLDGL 458



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 116/252 (46%), Gaps = 18/252 (7%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           L +M RRG+     T + T L+K L     ++EA     +M +   RP+V  Y  ++N L
Sbjct: 150 LGEMLRRGHSP--NTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGL 207

Query: 215 CRVGNFNKARFLLEQMELP----GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           C  GN   A  L E+M       G    P++  Y  +I S CK G+           I +
Sbjct: 208 CMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGL-----------IDK 256

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
              LF  M  +G  PDVVAY+ +I G C T R E A  LF++M  +G  PN VT+N  I 
Sbjct: 257 GKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLID 316

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                 ++++A  +++ M       P + +Y  +I   C  GR+ +ARD    +   G  
Sbjct: 317 ALCKAGKMEEANHLLKLMIQRGES-PDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIE 375

Query: 391 PREYTYKLVCDA 402
               +Y ++ + 
Sbjct: 376 TDAVSYNVLING 387



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 116/261 (44%), Gaps = 19/261 (7%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
            R    KGL++ + D     N   V T +V  LI  L + G + EA      M Q    P
Sbjct: 287 GRWEGAKGLFNEMVDEGVHPN---VVTFNV--LIDALCKAGKMEEANHLLKLMIQRGESP 341

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D + YN +I+  C  G  + AR L   ME  G     D  +Y +LI+ YCK G       
Sbjct: 342 DTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIE--TDAVSYNVLINGYCKSG------- 392

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               R+ EA  L+R M+ K  +P V+ YN L+ G  +  ++  A  LF +M      P  
Sbjct: 393 ----RMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPES 448

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
            TYN  +      N + +A+E+   ++N +   P+   +  +I  LC+A ++  AR+   
Sbjct: 449 CTYNILLDGLCKNNHLSEAMELFHYLENHDF-QPSIQIFNCLIDGLCKARKIEIARELFN 507

Query: 383 ELVDGGSVPREYTYKLVCDAL 403
            L   G  P   TY ++   L
Sbjct: 508 RLSHEGLEPNVITYTVMIHGL 528



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 14/227 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  +   L+  L  EG V +A   F  MK     P+   YN++++ LC+  + ++A  L 
Sbjct: 412 TVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELF 471

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
             +E   F+  P +  +  LI   CK            R+I  A  LF  +  +G  P+V
Sbjct: 472 HYLENHDFQ--PSIQIFNCLIDGLCK-----------ARKIEIARELFNRLSHEGLEPNV 518

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           + Y  +I G CK+ ++E A +LF  M +KGC PN VT+N+ +R +   +E+ K +E++++
Sbjct: 519 ITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQE 578

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
           M   +   P +S+ + ++  L +  +  E    L      G   R Y
Sbjct: 579 MAEKDFS-PDASTISIVVDLLSKDEKYREYLHLLPTFPAQGQTGRGY 624



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 24/228 (10%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-ELPGFRCPPDVYTYT 245
           + ++ + RM      PD    N++IN  C   N NK  F L  + E+      P+  T+T
Sbjct: 110 DVISLYKRMSLIGLAPDFITLNILINCYC---NLNKVDFGLAVLGEMLRRGHSPNTVTFT 166

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            L+   C           +  RI EA  L R M+  G+ P+VV Y  L++G C T     
Sbjct: 167 SLVKGLC-----------LGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTML 215

Query: 306 ALELFDDM-NKKGCI-----PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTS 358
           A++L ++M N  G       PN V Y + I        IDK  E+  +M+    G+ P  
Sbjct: 216 AVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKG--RGISPDV 273

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            +Y+ IIH +C  GR   A+    E+VD G  P   T+ ++ DAL  A
Sbjct: 274 VAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKA 321



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 95/217 (43%), Gaps = 15/217 (6%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD       + + C+ G+  ++        L   +  P + ++  L+ +  K        
Sbjct: 53  PDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKI------- 105

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               +R ++   L++ M   G  PD +  N LI+  C   +++  L +  +M ++G  PN
Sbjct: 106 ----KRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPN 161

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VT+ S ++   + + I +A  ++RKM  + +  P   +Y  +++ LC  G  + A    
Sbjct: 162 TVTFTSLVKGLCLGSRISEATGLLRKMVRMGY-RPNVVTYGTLLNGLCMTGNTMLAVKLH 220

Query: 382 AELVDG-GSVPREYTYKLV--CDALNAAEEPSLLDDG 415
            E+++G G         LV  C  +++  +  L+D G
Sbjct: 221 EEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKG 257


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 134/275 (48%), Gaps = 33/275 (12%)

Query: 155 LKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           + +M +RG+   LVT +++   IK   + G    AL     M+   C+PD ++Y  +I  
Sbjct: 448 MNNMLQRGHSANLVTYNTI---IKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK------------YGMQTGCR 261
            C++     A  L  +M   G  CP +V TYT LI  YCK            +  ++GCR
Sbjct: 505 FCKISKMESAFGLFNEMVDDGL-CPNEV-TYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 262 KAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
             ++                 A  L ++M+ +G  P+VV Y  +IDG CK      ALE+
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHAL 368
           F+ M ++GC+PN +TY+S IR      ++++A  +  +++   HG +P   +Y  +I A 
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE--RHGLIPDEITYVKMIEAY 680

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +G+V  A +FL  ++  G  P  +TY ++   L
Sbjct: 681 IMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 118/273 (43%), Gaps = 53/273 (19%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF--------- 235
           ++ AL  F +M +  C P+   Y+ +IN LC  G  N+A  L+ +M L G          
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325

Query: 236 ------------------------RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
                                    C P+VYTYT LIS  C  G+           +  A
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGI-----------LKVA 374

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             LF  M   G  P+ V YN LI+   +  RI+ A  + + M + GC PN VTYN  I+ 
Sbjct: 375 IGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           Y ++ +  KA+ +M  M    H      +Y  II   C++G    A   L  + DGG  P
Sbjct: 435 YCILGDPKKAMLVMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKP 493

Query: 392 REYTY-KLVCDALNAAEEPS-------LLDDGL 416
            E++Y +L+C     ++  S       ++DDGL
Sbjct: 494 DEWSYTELICGFCKISKMESAFGLFNEMVDDGL 526



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 113/266 (42%), Gaps = 16/266 (6%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           MSR  +G    T +   LI +L E   +  A      M +  C P++  YN +I   C +
Sbjct: 381 MSR--DGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCIL 438

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G+  KA  ++  M   G     ++ TY  +I  YC  G  T    A+R        +  L
Sbjct: 439 GDPKKAMLVMNNMLQRGHSA--NLVTYNTIIKGYCDSGNTT---SALR--------ILDL 485

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M   G  PD  +Y  LI G CK  ++E A  LF++M   G  PN VTY + I  Y    +
Sbjct: 486 MRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           +D A  ++  M+  +   P   +Y  +IH L +      A +    +++ G  P   TY 
Sbjct: 546 LDTATSLLEHMKR-SGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYT 604

Query: 398 LVCDALNAAEEPSLLDDGLRKRIRDG 423
            + D L      SL  +   K I  G
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQG 630



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 114/255 (44%), Gaps = 16/255 (6%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           V   +D +++M    +G L T  + T  I  L + G   +A   F  MK   C P+VY Y
Sbjct: 301 VNEAFDLIREMIL--HGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 358

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
             +I+ LC  G    A  L  +M   G    P+  TY  LI+   +            RR
Sbjct: 359 TALISGLCVSGILKVAIGLFHRMSRDGVF--PNTVTYNALINILVE-----------NRR 405

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           I  A  +  LM   G  P++V YN +I G C     ++A+ + ++M ++G   N VTYN+
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I+ Y        A+ ++  M++     P   SYT +I   C+  ++  A     E+VD 
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRD-GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDD 524

Query: 388 GSVPREYTYKLVCDA 402
           G  P E TY  + D 
Sbjct: 525 GLCPNEVTYTALIDG 539



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 118/274 (43%), Gaps = 18/274 (6%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           W    DM  +G    V T   T LI  L   G++  A+  F+RM +    P+   YN +I
Sbjct: 340 WRLFVDMKNKGCEPNVYT--YTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALI 397

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           N L        A  +L  M   G  C P++ TY  +I  YC  G     +KA+       
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNG--CSPNIVTYNEMIKGYCILGDP---KKAML------ 446

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +   ML +G   ++V YN +I G C +     AL + D M   GC P+  +Y   I  
Sbjct: 447 --VMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
           +  +++++ A  +  +M  ++ G+ P   +YT +I   C+  ++  A   L  +   G  
Sbjct: 505 FCKISKMESAFGLFNEM--VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           P   TY ++   L      S  ++  +  I +GI
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI 596



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 16/251 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK    +  +   ++    + Q   R  ++AY+ ++  L R+G          +M   G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P++  Y  +I++ CK G      + I ++++E+             PD   Y  +I
Sbjct: 211 VQ--PNLLIYNAVINALCKDG-NVADAETIMKKVFESE----------MSPDTFTYTSMI 257

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C+ + ++ AL++F+ M K+GC PN VTY++ I        +++A +++R+M  + HG
Sbjct: 258 LGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM--ILHG 315

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
           + PT+ + T  I ALC+ G   +A     ++ + G  P  YTY  +   L  +    +  
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAI 375

Query: 414 DGLRKRIRDGI 424
               +  RDG+
Sbjct: 376 GLFHRMSRDGV 386



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 81/212 (38%), Gaps = 53/212 (25%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L+T SS   LI+ LG+EG V EA   F  +++    PD   Y  +I A    G    A  
Sbjct: 635 LLTYSS---LIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFN 691

Query: 226 LLEQMELPGFRCPPDVYTYTILISSY--------------------CKYGMQTGCRKAIR 265
            L +M   G  C P ++TY +LI                       C +G QT  + A+ 
Sbjct: 692 FLGRMIKAG--CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVS 749

Query: 266 ----------------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                                        R +EAN L   M+ +G  PD  AYN L+   
Sbjct: 750 VMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSL 809

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            +   ++ A+ +F  M+ +GC  +   Y   I
Sbjct: 810 LRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 16/149 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
            NE L +   + Q  C PD  AYN ++ +L RV N + A  + + M   G  C   +  Y
Sbjct: 783 ANELLGSM--ISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQG--CEVHLNGY 837

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI + C+           RR+  EA   F  ML + + PD V    LIDG  +    +
Sbjct: 838 KELICALCQLH---------RRK--EARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKD 886

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYS 333
             +E    M  +  +P+   Y    R  S
Sbjct: 887 LCMEFLHIMETRRYMPSFHIYTILAREAS 915


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 134/275 (48%), Gaps = 33/275 (12%)

Query: 155 LKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           + +M +RG+   LVT +++   IK   + G    AL     M+   C+PD ++Y  +I  
Sbjct: 448 MNNMLQRGHSANLVTYNTI---IKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK------------YGMQTGCR 261
            C++     A  L  +M   G  CP +V TYT LI  YCK            +  ++GCR
Sbjct: 505 FCKISKMESAFGLFNEMVDDGL-CPNEV-TYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 262 KAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
             ++                 A  L ++M+ +G  P+VV Y  +IDG CK      ALE+
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHAL 368
           F+ M ++GC+PN +TY+S IR      ++++A  +  +++   HG +P   +Y  +I A 
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELE--RHGLIPDEITYVKMIEAY 680

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +G+V  A +FL  ++  G  P  +TY ++   L
Sbjct: 681 IMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 118/273 (43%), Gaps = 53/273 (19%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF--------- 235
           ++ AL  F +M +  C P+   Y+ +IN LC  G  N+A  L+ +M L G          
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325

Query: 236 ------------------------RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
                                    C P+VYTYT LIS  C  G+           +  A
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGL-----------LKVA 374

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             LF  M   G  P+ V YN LI+   +  RI+ A  + + M + GC PN VTYN  I+ 
Sbjct: 375 IGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKG 434

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           Y ++ +  KA+ +M  M    H      +Y  II   C++G    A   L  + DGG  P
Sbjct: 435 YCILGDPKKAMLVMNNMLQRGHSA-NLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKP 493

Query: 392 REYTY-KLVCDALNAAEEPS-------LLDDGL 416
            E++Y +L+C     ++  S       ++DDGL
Sbjct: 494 DEWSYTELICGFCKISKMESAFGLFNEMVDDGL 526



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 113/266 (42%), Gaps = 16/266 (6%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           MSR  +G    T +   LI +L E   +  A      M +  C P++  YN +I   C +
Sbjct: 381 MSR--DGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCIL 438

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G+  KA  ++  M   G     ++ TY  +I  YC  G  T    A+R        +  L
Sbjct: 439 GDPKKAMLVMNNMLQRGHS--ANLVTYNTIIKGYCDSGNTT---SALR--------ILDL 485

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M   G  PD  +Y  LI G CK  ++E A  LF++M   G  PN VTY + I  Y    +
Sbjct: 486 MRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK 545

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           +D A  ++  M+  +   P   +Y  +IH L +      A +    +++ G  P   TY 
Sbjct: 546 LDTATSLLEHMKR-SGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYT 604

Query: 398 LVCDALNAAEEPSLLDDGLRKRIRDG 423
            + D L      SL  +   K I  G
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQG 630



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 124/282 (43%), Gaps = 20/282 (7%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           V   +D +++M    +G L T  + T  I  L + G   +A   F  MK   C P+VY Y
Sbjct: 301 VNEAFDLIREMIL--HGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 358

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
             +I+ LC  G    A  L  +M   G    P+  TY  LI+   +            RR
Sbjct: 359 TALISGLCVSGLLKVAIGLFHRMSRDGVF--PNTVTYNALINILVE-----------NRR 405

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           I  A  +  LM   G  P++V YN +I G C     ++A+ + ++M ++G   N VTYN+
Sbjct: 406 IKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNT 465

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I+ Y        A+ ++  M++     P   SYT +I   C+  ++  A     E+VD 
Sbjct: 466 IIKGYCDSGNTTSALRILDLMRD-GGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDD 524

Query: 388 GSVPREYTYKLVCDALNAAEE----PSLLDDGLRKRIRDGIE 425
           G  P E TY  + D     E+     SLL+   R   R  ++
Sbjct: 525 GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQ 566



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 118/274 (43%), Gaps = 18/274 (6%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           W    DM  +G    V T   T LI  L   GL+  A+  F+RM +    P+   YN +I
Sbjct: 340 WRLFVDMKNKGCEPNVYT--YTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALI 397

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           N L        A  +L  M   G  C P++ TY  +I  YC  G     +KA+       
Sbjct: 398 NILVENRRIKYAFVVLNLMGRNG--CSPNIVTYNEMIKGYCILGDP---KKAML------ 446

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +   ML +G   ++V YN +I G C +     AL + D M   GC P+  +Y   I  
Sbjct: 447 --VMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICG 504

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
           +  +++++ A  +  +M  ++ G+ P   +YT +I   C+  ++  A   L  +   G  
Sbjct: 505 FCKISKMESAFGLFNEM--VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCR 562

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           P   TY ++   L      S  ++  +  I +GI
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGI 596



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 16/251 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK    +  +   ++    + Q   R  ++AY+ ++  L R+G          +M   G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P++  Y  +I++ CK G      + I ++++E+             PD   Y  +I
Sbjct: 211 VQ--PNLLIYNAVINALCKDG-NVADAETIMKKVFESE----------MSPDTFTYTSMI 257

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C+ + ++ AL++F+ M K+GC PN VTY++ I        +++A +++R+M  + HG
Sbjct: 258 LGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM--ILHG 315

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
           + PT+ + T  I ALC+ G   +A     ++ + G  P  YTY  +   L  +    +  
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAI 375

Query: 414 DGLRKRIRDGI 424
               +  RDG+
Sbjct: 376 GLFHRMSRDGV 386



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 81/212 (38%), Gaps = 53/212 (25%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L+T SS   LI+ LG+EG V EA   F  +++    PD   Y  +I A    G    A  
Sbjct: 635 LLTYSS---LIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFN 691

Query: 226 LLEQMELPGFRCPPDVYTYTILISSY--------------------CKYGMQTGCRKAIR 265
            L +M   G  C P ++TY +LI                       C +G QT  + A+ 
Sbjct: 692 FLGRMIKAG--CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVS 749

Query: 266 ----------------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                                        R +EAN L   M+ +G  PD  AYN L+   
Sbjct: 750 VMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSL 809

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            +   ++ A+ +F  M+ +GC  +   Y   I
Sbjct: 810 LRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 16/149 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
            NE L +   + Q  C PD  AYN ++ +L RV N + A  + + M   G  C   +  Y
Sbjct: 783 ANELLGSM--ISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQG--CEVHLNGY 837

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI + C+           RR+  EA   F  ML + + PD V    LIDG  +    +
Sbjct: 838 KELICALCQLH---------RRK--EARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKD 886

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYS 333
             +E    M  +  +P+   Y    R  S
Sbjct: 887 LCMEFLHIMETRRYMPSFHIYTILAREAS 915


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 147/328 (44%), Gaps = 26/328 (7%)

Query: 82  ILKKEAYNIANNVLVLGPAAYRDPQKVTL-----GLNKATEFYHWVERFFDFFH-----N 131
           I K   + +AN++L   P+    P  V       GL  A  +    +   + F      +
Sbjct: 268 ICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLD 327

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           ++T   +   F +   V  + + L+ M   G    V T   T +I    +EGLV+EA+  
Sbjct: 328 DVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVIT--YTTVINGFCKEGLVDEAVML 385

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              M    C+P+  +Y +V+  LCR   +  A+ L+  M   G  C P+  T+  LI+  
Sbjct: 386 LKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQG--CLPNPVTFNTLINFM 443

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK G+             +A  L + ML  G  PD+++Y+ +IDG  K  + E ALEL +
Sbjct: 444 CKKGLAE-----------QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLN 492

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
            M  KG  PN + Y+S     S     DK I+M   +Q+       ++ Y  +I +LC+ 
Sbjct: 493 VMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVR-SDAALYNAVISSLCKR 551

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLV 399
                A DF A +V  G +P E TY ++
Sbjct: 552 WETDRAIDFFAYMVSNGCMPNESTYTIL 579



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 22/242 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---- 230
           ++  + E+G V+E +    ++  F C PD+ +YN V+  LC    ++    L+ +M    
Sbjct: 184 VVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVH 243

Query: 231 ----ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
               ++P   C PD+  Y  +I   CK G               AN +   M   G  P+
Sbjct: 244 EALSQMPEHGCTPDLRMYATIIDGICKDGHHE-----------VANDILSRMPSYGLKPN 292

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           VV YN ++ G C   R E A +L  +M ++ C  + VT+N  + ++     +D+ IE++ 
Sbjct: 293 VVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLE 352

Query: 347 KMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           +M  L HG +P   +YT +I+  C+ G V EA   L  +   G  P   +Y +V   L  
Sbjct: 353 QM--LEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCR 410

Query: 406 AE 407
           AE
Sbjct: 411 AE 412



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 14/218 (6%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EA      M Q  C  D   +N++++  C+ G  ++   LLEQM   G  C PDV TYT 
Sbjct: 311 EAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHG--CIPDVITYTT 368

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           +I+ +CK G+           + EA  L + M   G  P+ ++Y  ++ G C+  R   A
Sbjct: 369 VINGFCKEGL-----------VDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDA 417

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
            EL   M ++GC+PN VT+N+ I +       ++AIE++++M  +N   P   SY+ +I 
Sbjct: 418 QELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQML-VNGCSPDLISYSTVID 476

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
            L +AG+  EA + L  +++ G  P    Y  +  AL+
Sbjct: 477 GLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALS 514



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 22/215 (10%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+ Y Y  ++ +LC  G    A  +L++M L G    P +    +++ + C+ G   G R
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCH--VILEAACRGG---GFR 160

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
            A+R          +++  KG   D    N ++   C+   ++  +EL   +   GC P+
Sbjct: 161 SAVRA--------LQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPD 212

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKM--------QNLNHG-VPTSSSYTPIIHALCEAG 372
            V+YN+ ++   +    D   E+M +M        Q   HG  P    Y  II  +C+ G
Sbjct: 213 IVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDG 272

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
               A D L+ +   G  P    Y  V   L +AE
Sbjct: 273 HHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAE 307


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 113/228 (49%), Gaps = 14/228 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + LI +  +EG V EA      M +    P+V  Y+ ++N         +AR L + M
Sbjct: 117 TFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVM 176

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G  C PDV++Y ILI+ YCK            +RI EA  LF  M+ +G  PD+V+Y
Sbjct: 177 ITKG--CKPDVFSYNILINGYCK-----------AKRIGEAKQLFNEMIHQGLTPDIVSY 223

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LIDG C+  R+  A +LF +M   G +P+  TY+  +  +     + KA  + R MQ+
Sbjct: 224 NTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQS 283

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
             +  P    Y  +I A+C++  + EAR   +EL   G  P    +KL
Sbjct: 284 -TYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNMKHWKL 330



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 124/252 (49%), Gaps = 20/252 (7%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
             K M   G   ++VT S++   I  L ++  VNEAL  F  MK     P+++ YN +I 
Sbjct: 32  LFKKMGEAGCQPDVVTYSTI---IDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQ 88

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC    + +A  +L   E+      P++ T+++LI+ +CK G            ++EA 
Sbjct: 89  GLCNFSRWREASAMLN--EMMSLNIMPNIVTFSLLINIFCKEG-----------NVFEAR 135

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            + + M   G  P+VV Y+ L++G      +  A +LFD M  KGC P+  +YN  I  Y
Sbjct: 136 GVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGY 195

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                I +A ++  +M  ++ G+ P   SY  +I  LC+ GR+ EA D    ++  G++P
Sbjct: 196 CKAKRIGEAKQLFNEM--IHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLP 253

Query: 392 REYTYKLVCDAL 403
              TY ++ D  
Sbjct: 254 DLCTYSILLDGF 265



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 20/229 (8%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDV+ Y  +IN LC++G    A  L ++M   G  C PDV TY+ +I S CK       
Sbjct: 7   QPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAG--CQPDVVTYSTIIDSLCK------- 57

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                RR+ EA  +F  M  KG  P++  YN LI G C   R   A  + ++M     +P
Sbjct: 58  ----DRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMP 113

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
           N VT++  I  +     + +A  +++ M  +  GV P   +Y+ +++       V EAR 
Sbjct: 114 NIVTFSLLINIFCKEGNVFEARGVLKTMTEM--GVEPNVVTYSSLMNGYSLQAEVFEARK 171

Query: 380 FLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIRDGI 424
               ++  G  P  ++Y ++    C A    E   L ++ + + +   I
Sbjct: 172 LFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDI 220



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 95/230 (41%), Gaps = 60/230 (26%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           CKE  +  ARG         LK M+  G    +VT SS   L+     +  V EA   F 
Sbjct: 126 CKEGNVFEARG--------VLKTMTEMGVEPNVVTYSS---LMNGYSLQAEVFEARKLFD 174

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            M    C+PDV++YN++IN  C+     +A+ L  +M   G    PD+ +Y  LI   C+
Sbjct: 175 VMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGL--TPDIVSYNTLIDGLCQ 232

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV-------------------------- 287
            G           R+ EA+ LF+ ML  G +PD+                          
Sbjct: 233 LG-----------RLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAM 281

Query: 288 ---------VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
                    V YN LID  CK+  ++ A +LF ++  +G  PN   +  F
Sbjct: 282 QSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNMKHWKLF 331



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 3/125 (2%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+ +G+ PDV  Y  +I+G CK      A  LF  M + GC P+ VTY++ I        
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 338 IDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +++A+++   M+    G+ P   +Y  +I  LC   R  EA   L E++    +P   T+
Sbjct: 61  VNEALDIFSYMK--AKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTF 118

Query: 397 KLVCD 401
            L+ +
Sbjct: 119 SLLIN 123


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 19/258 (7%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           ++ +S   L+  L +     E    +  M + R +P++  +N+ IN LC+ G  NKA  +
Sbjct: 163 LSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDV 222

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
           +E ++  GF   P++ TY  LI  +CK G           +++ A+ + + ML     P+
Sbjct: 223 IEDIKAWGF--SPNIVTYNTLIDGHCKKGSAG--------KMYRADAILKEMLANKICPN 272

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            + +N LIDG CK   +  A   F++M ++G  PN VTYNS I   S   ++D+AI +  
Sbjct: 273 EITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWD 332

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           KM  L    P   ++  +I+  C+   + EAR    ++ +   VP   T+  + DA   A
Sbjct: 333 KMVGLGLK-PNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKA 391

Query: 407 ---EEP-----SLLDDGL 416
              EE      S+LD+G+
Sbjct: 392 GMMEEGFALHNSMLDEGI 409



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 18/217 (8%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A   F  M++   +P++  YN +IN L   G  ++A  L ++M   G    P++ T+  L
Sbjct: 292 AKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKM--VGLGLKPNIVTFNAL 349

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I+ +CK           ++ I EA  LF  +  +  VP+ + +N +ID  CK   +E   
Sbjct: 350 INGFCK-----------KKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGF 398

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPII 365
            L + M  +G  PN  TYN  I        +  A +++ +M+N  L   V T   Y  +I
Sbjct: 399 ALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVT---YNILI 455

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              C+ G   +A   L E+++ G  P   TY  + D 
Sbjct: 456 GGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDG 492



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 16/199 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I    + G++ E  A    M      P+V  YN +I  LCR  N   A+ LL +ME   
Sbjct: 384 MIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEME--N 441

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           +    DV TY ILI  +CK G  +           +A  L   ML  G  P+ V YN L+
Sbjct: 442 YELKADVVTYNILIGGWCKDGEPS-----------KAEKLLGEMLNVGVKPNHVTYNTLM 490

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG C    ++ AL++   M K+G   N VTYN  I+ +    +++ A  ++ +M  L  G
Sbjct: 491 DGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEM--LEKG 548

Query: 355 V-PTSSSYTPIIHALCEAG 372
           + P  ++Y  +   + E G
Sbjct: 549 LNPNRTTYDVVRLEMLEKG 567



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 13/157 (8%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           S+  CLI  L     V  A      M+ +  + DV  YN++I   C+ G  +KA  LL +
Sbjct: 414 STYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGE 473

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M   G +  P+  TY  L+  YC   M+   + A++ R          M  +G   +VV 
Sbjct: 474 MLNVGVK--PNHVTYNTLMDGYC---MEGNLKAALKVRTQ--------MEKEGKRANVVT 520

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           YN LI G CKT ++E A  L ++M +KG  PNR TY+
Sbjct: 521 YNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYD 557



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R  NV+     L +M        V T ++  LI    ++G  ++A      M     +P+
Sbjct: 425 RNQNVRAAKKLLNEMENYELKADVVTYNI--LIGGWCKDGEPSKAEKLLGEMLNVGVKPN 482

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              YN +++  C  GN   A  +  QME  G R   +V TY +LI  +CK G      + 
Sbjct: 483 HVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRA--NVVTYNVLIKGFCKTGKLEDANRL 540

Query: 264 IRRRIWEANH-------LFRL-MLFKGFVPDVVAY 290
           +   + +  +       + RL ML KGF+PD+  +
Sbjct: 541 LNEMLEKGLNPNRTTYDVVRLEMLEKGFIPDIEGH 575



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 4/162 (2%)

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            I  A  +FR +   GF   + + N L+    K         ++ +M K+   PN  T+N
Sbjct: 145 EIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFN 204

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE---AGRVLEARDFLAE 383
            FI       +++KA +++  ++      P   +Y  +I   C+   AG++  A   L E
Sbjct: 205 IFINGLCKAGKLNKAEDVIEDIKAWGFS-PNIVTYNTLIDGHCKKGSAGKMYRADAILKE 263

Query: 384 LVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           ++     P E T+  + D     E      +   +  R G++
Sbjct: 264 MLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLK 305


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I+ + +EG+V+ A      ++   C PDV +YN+++ AL   G + +   L+ +M    
Sbjct: 269 IIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM--FS 326

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +C P+V TY+ILI++ C+ G           +I EA +L +LM  KG  PD  +Y+ LI
Sbjct: 327 EKCDPNVVTYSILITTLCRDG-----------KIEEAMNLLKLMKEKGLTPDAYSYDPLI 375

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              C+  R++ A+E  + M   GC+P+ V YN+ +       + D+A+E+  K+  +   
Sbjct: 376 AAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCS 435

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P SSSY  +  AL  +G  + A   + E++  G  P E TY  +   L
Sbjct: 436 -PNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCL 483



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 57/308 (18%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L++ L  +G   E      +M   +C P+V  Y+++I  LCR G   +A  LL+ M
Sbjct: 300 SYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLM 359

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  G    PD Y+Y  LI+++C+ G           R+  A      M+  G +PD+V Y
Sbjct: 360 KEKGL--TPDAYSYDPLIAAFCREG-----------RLDVAIEFLETMISDGCLPDIVNY 406

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF---------------------- 328
           N ++   CK  + ++ALE+F  + + GC PN  +YN+                       
Sbjct: 407 NTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMS 466

Query: 329 -------IRYYSVVN------EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
                  I Y S+++       +D+A E++  M++     P+  +Y  ++   C+A R+ 
Sbjct: 467 NGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFH-PSVVTYNIVLLGFCKAHRIE 525

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALN----AAEEPSLLDDGLRKRIRDGI-EYRFRQ 430
           +A + L  +V  G  P E TY ++ + +      AE   L +D +R    D I EY F++
Sbjct: 526 DAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI---DAISEYSFKR 582

Query: 431 VMKVKPIM 438
           + +  P++
Sbjct: 583 LHRTFPLL 590



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 27/220 (12%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----- 255
           +PDV+AYN +IN  C++   + A  +L++M    F   PD  TY I+I S C  G     
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDF--SPDTVTYNIMIGSLCSRGKLDLA 212

Query: 256 -------MQTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                  +   C+  +               + EA  L   ML +G  PD+  YN +I G
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            CK   ++RA E+  ++  KGC P+ ++YN  +R      + ++  ++M KM +     P
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFS-EKCDP 331

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
              +Y+ +I  LC  G++ EA + L  + + G  P  Y+Y
Sbjct: 332 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSY 371



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 15/208 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            F R   +    +FL+ M    +G L    +   ++  L + G  ++AL  F ++ +  C
Sbjct: 377 AFCREGRLDVAIEFLETMI--SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGC 434

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+  +YN + +AL   G+  +A  ++ +M   G    PD  TY  +IS  C+ GM    
Sbjct: 435 SPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGI--DPDEITYNSMISCLCREGM---- 488

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  + EA  L   M    F P VV YN ++ G CK +RIE A+ + + M   GC P
Sbjct: 489 -------VDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRP 541

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           N  TY   I          +A+E+   +
Sbjct: 542 NETTYTVLIEGIGFAGYRAEAMELANDL 569



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 15/185 (8%)

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           CR GN+ ++  LLE M   G+   PDV   T LI  +              R I +A  +
Sbjct: 100 CRSGNYIESLHLLETMVRKGYN--PDVILCTKLIKGFFTL-----------RNIPKAVRV 146

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
             + L K   PDV AYN LI+G CK  RI+ A  + D M  K   P+ VTYN  I     
Sbjct: 147 MEI-LEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCS 205

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
             ++D A++++ ++ + ++  PT  +YT +I A    G V EA   + E++  G  P  +
Sbjct: 206 RGKLDLALKVLNQLLS-DNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMF 264

Query: 395 TYKLV 399
           TY  +
Sbjct: 265 TYNTI 269



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C++     +L L + M +KG  P+ +     I+ +  +  I KA+ +M  ++    G P 
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKF--GQPD 157

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +Y  +I+  C+  R+ +A   L  +      P   TY ++  +L
Sbjct: 158 VFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSL 203


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 131/254 (51%), Gaps = 23/254 (9%)

Query: 168 TTSSVTCL----IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           +T   TC+    I    ++G+++ A +    MKQ    PD++ Y+ +I+ALC++  +   
Sbjct: 208 STKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENV 267

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           R L   +E+      P+V T+  +I   CK G           ++ +A  + R M+ KG 
Sbjct: 268 RTLF--LEMIHLNIYPNVCTFNSVIDGLCKEG-----------KVEDAEEIMRYMIEKGV 314

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PDV+ YN +IDG     +++RA E+FD M  K   PN ++YN  I  Y+   +ID+A++
Sbjct: 315 DPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQ 374

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + R++     G+ P+  +   ++H L E GR   A++F  E++  G +P  YT+   C  
Sbjct: 375 VCREIS--QKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTH---CTL 429

Query: 403 LNAAEEPSLLDDGL 416
           L    +  L+++ +
Sbjct: 430 LGGYFKNGLVEEAM 443



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 16/243 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI     +  ++EA+     + Q   +P +   NV+++ L  +G    A+   ++M
Sbjct: 355 SYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEM 414

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PD+YT+  L+  Y K G+           + EA   F  +  +    ++  Y
Sbjct: 415 LSAGH--IPDLYTHCTLLGGYFKNGL-----------VEEAMSHFHKLERRREDTNIQIY 461

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             +IDG CK  ++++A   F+ +   G  P+ +TY + I  Y     +D+A +M+RKM++
Sbjct: 462 TAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMED 521

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
            N  +  + +Y  I+     + +V E + FL E+          T +L+ D +  AE+PS
Sbjct: 522 -NGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDII--AEDPS 578

Query: 411 LLD 413
           LL+
Sbjct: 579 LLN 581



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 12/166 (7%)

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           C P+   Y  +++  CK G              +A  L RLM      P+   Y+ +ID 
Sbjct: 174 CEPNEVMYGTVMNGLCKKG-----------HTQKAFDLLRLMEQGSTKPNTCIYSIVIDA 222

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            CK   ++ A  L ++M +K   P+  TY++ I     +++ +    +  +M +LN   P
Sbjct: 223 FCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNI-YP 281

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              ++  +I  LC+ G+V +A + +  +++ G  P   TY ++ D 
Sbjct: 282 NVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDG 327



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 52/111 (46%)

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +++ CC  +R +    +     KKG   N+V +N+ +R     N++  A+ + +K+   N
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVREN 172

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              P    Y  +++ LC+ G   +A D L  +  G + P    Y +V DA 
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAF 223


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 131/285 (45%), Gaps = 27/285 (9%)

Query: 129  FHNEMTCKEMGIVFARGNNVKGL---------WDFLKDMSRRGNGELVTTSSVTCLIKVL 179
             H +M     G VF  G  +  L          D   +M   G G L      + L+  L
Sbjct: 1073 LHEKMKGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMI--GAGILPDVVVYSSLMDGL 1130

Query: 180  GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
               G + EAL  F  M+      DVY YN +I+ L R G + +  + L  M   GF   P
Sbjct: 1131 CRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGF--SP 1188

Query: 240  DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
            D +T+TILI   CK G           ++ EA  +  LM  KG  PD++ YN L++G C 
Sbjct: 1189 DAFTFTILIDGLCKEG-----------KVGEAQQILELMRHKGKEPDILTYNTLMNGLCL 1237

Query: 300  TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTS 358
              ++E A +LF+ +  +G   N  +YN  I  Y    +ID+A     +M+    G+ P++
Sbjct: 1238 VGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMR--PKGLKPST 1295

Query: 359  SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +Y  +I ALC++GRV  A+    E+   G   +  TY ++ D L
Sbjct: 1296 VTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGL 1340



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 112/233 (48%), Gaps = 15/233 (6%)

Query: 171  SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
            +VT L+K +  E  + +A+  F  M +     D   Y ++IN LC+      A  L E+M
Sbjct: 1018 TVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKM 1077

Query: 231  ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            +     C  DV+TY ++I + CK GM T           EA  +F  M+  G +PDVV Y
Sbjct: 1078 K---GNCKGDVFTYGMIIDALCKDGMTT-----------EALDMFSEMIGAGILPDVVVY 1123

Query: 291  NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
            + L+DG C+  R++ ALE F +M  +G   +  TYNS I   S      +    +  M +
Sbjct: 1124 SSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVD 1183

Query: 351  LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                 P + ++T +I  LC+ G+V EA+  L  +   G  P   TY  + + L
Sbjct: 1184 RGFS-PDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGL 1235



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 116/263 (44%), Gaps = 20/263 (7%)

Query: 145  GNNVKGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            G +  GLW     FL  M  RG      T   T LI  L +EG V EA      M+    
Sbjct: 1164 GLSRAGLWKEVTWFLNLMVDRGFSPDAFT--FTILIDGLCKEGKVGEAQQILELMRHKGK 1221

Query: 201  RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
             PD+  YN ++N LC VG    A  L E +   G +   +V++Y ILI+ YCK       
Sbjct: 1222 EPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKL--NVFSYNILINGYCK------- 1272

Query: 261  RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++I EA   F  M  KG  P  V YN LI   C++ R+  A +LF +M   G   
Sbjct: 1273 ----DQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFL 1328

Query: 321  NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
               TY   +        +++A+++ + ++   H  P    ++ ++  +C AG++ EA   
Sbjct: 1329 KLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHK-PNIEVFSILLDGMCRAGKLEEAWKQ 1387

Query: 381  LAELVDGGSVPREYTYKLVCDAL 403
              E+   G  P    Y ++ + L
Sbjct: 1388 FDEISKNGLEPDTIAYNILINGL 1410



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 110/234 (47%), Gaps = 23/234 (9%)

Query: 142  FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
            + +   +   + F ++M  R  G   +T +   LI  L + G V  A   F  M+     
Sbjct: 1270 YCKDQKIDEAFRFFEEM--RPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQF 1327

Query: 202  PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
              +  Y V+++ LC+ G+  +A  L + ++    +  P++  ++IL+   C+ G      
Sbjct: 1328 LKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHK--PNIEVFSILLDGMCRAG------ 1379

Query: 262  KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 ++ EA   F  +   G  PD +AYN LI+G C    +  A++L   M +KGC+P+
Sbjct: 1380 -----KLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPD 1434

Query: 322  RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS--------SSYTPIIHA 367
             +T+N  I+     NEI +AI+++ +M+N N     +        +S+ P  HA
Sbjct: 1435 SITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHA 1488



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 15/219 (6%)

Query: 185  VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
            +N+A+  F R       P    +N ++ ++ ++G ++    +  ++   G +  PD+YT 
Sbjct: 927  LNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQ--PDLYTL 984

Query: 245  TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             ILI   C             R +     +F   L +GF PD V    L+ G      I 
Sbjct: 985  NILIHCCCSL-----------RAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIP 1033

Query: 305  RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
             A++LFD+M KKG + +  TY   I       +   AI++  KM+    G     +Y  I
Sbjct: 1034 DAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKG--DVFTYGMI 1091

Query: 365  IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            I ALC+ G   EA D  +E++  G +P    Y  + D L
Sbjct: 1092 IDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGL 1130



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 99/239 (41%), Gaps = 17/239 (7%)

Query: 169  TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
            T +   L+  + + G  +     + ++     +PD+Y  N++I+  C +        +  
Sbjct: 946  TDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFG 1005

Query: 229  QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
                 GF   PD  T T L+       M+ G   A++        LF  M  KG + D  
Sbjct: 1006 GFLKRGFE--PDAVTVTTLVKGVW---MENGIPDAVQ--------LFDEMTKKGLLGDAK 1052

Query: 289  AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
             Y  LI+G CK  +   A++L + M K  C  +  TY   I          +A++M  +M
Sbjct: 1053 TYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEM 1111

Query: 349  QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
              +  G+ P    Y+ ++  LC  GR+ EA +F  E+   G     YTY  +   L+ A
Sbjct: 1112 --IGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRA 1168


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 147/297 (49%), Gaps = 35/297 (11%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R NG      + T L+  L ++ L +     + +M +     +++ YNV+++A C+ G+ 
Sbjct: 163 RVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDV 222

Query: 221 NKARFLLEQMELPGFRCP-PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279
            KA  +L +MEL   +C  PD++TY  LIS YCK GM            +EA  +   M 
Sbjct: 223 EKAEKVLSEMEL---KCVFPDLFTYNTLISLYCKKGMH-----------YEALSVQDRME 268

Query: 280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
             G  PD+  YN LI G C+  R+  A++LF D+  K   PN VTY S I  Y  VN++D
Sbjct: 269 MAGISPDIFTYNSLIYGFCREGRMREAVQLFRDI--KDVTPNHVTYTSLIDGYCRVNDLD 326

Query: 340 KAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           +A+ +   M     G+ PT  +Y  I+  LCE GR+ +A   L E+ +    P   T   
Sbjct: 327 EALRLKEVMS--EKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVT--- 381

Query: 399 VCDAL-NAAEEPSLLDDGLR---KRIRDGI---EYRFRQVM----KVKPIMKHKELL 444
            C+ L NA  +   +   L+   K +  G+   ++ ++ ++    K K I K KELL
Sbjct: 382 -CNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELL 437



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 18/259 (6%)

Query: 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN 186
           D   N +T   +   + R N++       + MS +G    V T +   +++ L E G + 
Sbjct: 304 DVTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYN--SILRKLCEGGRLR 361

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           +A      M + +  PD    N +INA C++G+   A  + ++M   G +   D +TY  
Sbjct: 362 DANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKL--DQFTYKA 419

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI  +CK            + I +A  L   M+  GF P    Y+ L+D  CK    E  
Sbjct: 420 LIHGFCK-----------AKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAV 468

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
           ++L D++ ++G   +   Y + IR +  + +ID A  ++  M+  + G+   S  YT + 
Sbjct: 469 IKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMK--DKGIFGDSVVYTSLA 526

Query: 366 HALCEAGRVLEARDFLAEL 384
           +   + G+V    D L E+
Sbjct: 527 YGYWKVGKVNVTSDILDEM 545



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 29/220 (13%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI +  ++G+  EAL+   RM+     PD++ YN +I   CR G   +A  L   ++   
Sbjct: 247 LISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIK--- 303

Query: 235 FRCPPDVYTYTILISSYCK-------------------YGMQTGCRKAIRR-----RIWE 270
               P+  TYT LI  YC+                   Y         +R+     R+ +
Sbjct: 304 -DVTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRD 362

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           AN L   M  +   PD V  N LI+  CK   +  AL++ D M   G   ++ TY + I 
Sbjct: 363 ANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIH 422

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
            +    EIDKA E++  M +     P+  +Y+ ++ + C+
Sbjct: 423 GFCKAKEIDKAKELLFGMMDAGFS-PSYCTYSWLVDSYCK 461



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 83/211 (39%), Gaps = 32/211 (15%)

Query: 154 FLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
            L +MS R     +   +VTC  LI    + G +  AL    +M     + D + Y  +I
Sbjct: 366 LLNEMSERK----IEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALI 421

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC----------- 260
           +  C+    +KA+ LL  M   GF   P   TY+ L+ SYCK   +              
Sbjct: 422 HGFCKAKEIDKAKELLFGMMDAGF--SPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRG 479

Query: 261 --------RKAIRR-----RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
                   R  IRR     +I  A  +  LM  KG   D V Y  L  G  K  ++    
Sbjct: 480 LCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTS 539

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           ++ D+M KK  +     Y SF   Y+  N I
Sbjct: 540 DILDEMYKKRLMITLKIYRSFNASYASDNSI 570



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 69/183 (37%), Gaps = 41/183 (22%)

Query: 270 EANHLFRLMLFKGFVPDVVA-----------------------------------YNCLI 294
           EA  +F  M   GF P + A                                   YN L+
Sbjct: 154 EAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLL 213

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
             CCK+  +E+A ++  +M  K   P+  TYN+ I  Y       +A+ +  +M+ +   
Sbjct: 214 HACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRME-MAGI 272

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
            P   +Y  +I+  C  GR+ EA     ++ D    P   TY  + D      +   LD+
Sbjct: 273 SPDIFTYNSLIYGFCREGRMREAVQLFRDIKD--VTPNHVTYTSLIDGYCRVND---LDE 327

Query: 415 GLR 417
            LR
Sbjct: 328 ALR 330


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 122/236 (51%), Gaps = 20/236 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L+    +EG V EA      M     +P V  YN +++    V   NKA+ +   M
Sbjct: 179 TFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTM 238

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PD+ +Y+ILI+ +CK  M             EA  L + M  K  +P+VV Y
Sbjct: 239 AQLGVS--PDIQSYSILINGFCKIKMMD-----------EAMELLKEMHHKQIIPNVVTY 285

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + LIDG CK+ +I  AL+L D+M+ +G  PN VTY+S +      +++D AI ++ +M+ 
Sbjct: 286 SSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMK- 344

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CD 401
            N G+ P   +YT +I  LC++G++ +AR    +L+  G     YTY ++    CD
Sbjct: 345 -NQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCD 399



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 24/239 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----------VGNFNKAR 224
           LI    + G +  A +   ++ +   +P+    N +I  LC           VG    A 
Sbjct: 103 LINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAV 162

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            L  +M L      PDVYT+TIL+  +CK G           R+ EA ++  +M+ +G  
Sbjct: 163 DLFNKMILENIN--PDVYTFTILVDGFCKEG-----------RVKEAKNVLAMMMIQGIK 209

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P VV YN L+DG     ++ +A  +F+ M + G  P+  +Y+  I  +  +  +D+A+E+
Sbjct: 210 PGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMEL 269

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +++M +    +P   +Y+ +I  LC++G++  A   + E+ D G  P   TY  + DAL
Sbjct: 270 LKEMHH-KQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDAL 327



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 106/209 (50%), Gaps = 7/209 (3%)

Query: 197 QFR-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
           +FR  +P++   N++IN+ C++G+   A  +L ++   G++  P+  T   LI   C  G
Sbjct: 89  EFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYK--PNTITLNTLIKGLCLNG 146

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
            +   +  I  ++ +A  LF  M+ +   PDV  +  L+DG CK  R++ A  +   M  
Sbjct: 147 -KIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMI 205

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRV 374
           +G  P  VTYNS +  Y +V +++KA  +   M  L  GV P   SY+ +I+  C+   +
Sbjct: 206 QGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQL--GVSPDIQSYSILINGFCKIKMM 263

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDAL 403
            EA + L E+     +P   TY  + D L
Sbjct: 264 DEAMELLKEMHHKQIIPNVVTYSSLIDGL 292



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 33/240 (13%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S + LI    +  +++EA+     M   +  P+V  Y+ +I+ LC+ G  + A  L+++M
Sbjct: 249 SYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEM 308

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G   PP++ TY+ ++ + CK             ++  A  L   M  +G  P++  Y
Sbjct: 309 HDRG--QPPNIVTYSSILDALCK-----------NHQVDNAIALLTQMKNQGIQPNMYTY 355

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C++ ++E A ++F+D+  KG   N  TY   I+ +      D+A+ ++ KM++
Sbjct: 356 TILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMED 415

Query: 351 LNHGVPTSSSYTPIIHA-------------LCEA------GRVLEARDFLAELVDGGSVP 391
            N  +P + +Y  II +             LCE       GRV    D +A +   GS P
Sbjct: 416 -NGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIETNFDGRVALTNDLIASIWVTGSSP 474


>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 29/255 (11%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   +IK +   G + +AL    RM +F C PD    N++++ LCRV   NK   +L ++
Sbjct: 84  SFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLCRVKQVNKGHEVLRRL 143

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG------------MQTGCR--------------KAI 264
           +  G  C P+V TYT +IS YCK G            +Q+G R              KA+
Sbjct: 144 QRDGV-CMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKAL 202

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
                 A  ++  ++     PDVV +N LIDG C+  +++ A+ ++ +M +    PN  T
Sbjct: 203 DME--SAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYT 260

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           ++  I      N   +A+ ++R++      VP +  Y PII  LC+ G+V EA   + ++
Sbjct: 261 FSIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDM 320

Query: 385 VDGGSVPREYTYKLV 399
            + G  P +YTY ++
Sbjct: 321 EEKGCHPDKYTYTIL 335



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 115/283 (40%), Gaps = 65/283 (22%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAY----------------------------------- 207
           GL++ A     +   F CR + YAY                                   
Sbjct: 25  GLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQDAVALFESWIQDGLYSPDVWS 84

Query: 208 -NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
            NVVI  +CRVGN  KA  L+E+M    F C PD  T  IL+   C+        + +RR
Sbjct: 85  FNVVIKGVCRVGNLQKALELVERMT--EFGCSPDTITQNILVDGLCRVKQVNKGHEVLRR 142

Query: 267 -------------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
                                    R+ +A  ++  ML  G  P+ V YN LI+G  K  
Sbjct: 143 LQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKAL 202

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
            +E A+ ++  +    C P+ VT+NS I  Y    ++D A+ +  +M   +H  P   ++
Sbjct: 203 DMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQ-HHIQPNVYTF 261

Query: 362 TPIIHALCEAGRVLEARDFLAEL-VDGGSVPREYTYKLVCDAL 403
           + IIH+LC   R  EA   L EL +    VP+ + Y  + D L
Sbjct: 262 SIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFIYNPIIDIL 304



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 14/206 (6%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   ++ V  +    G  + A  LL +     F C  + Y Y  L+++   +G      
Sbjct: 9   PDAGFFSFVAGSCTNAGLLDAAANLLTKGSW--FGCRIEWYAYNNLLNTLIAHG------ 60

Query: 262 KAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                R  +A  LF   +  G + PDV ++N +I G C+   +++ALEL + M + GC P
Sbjct: 61  -----RAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSP 115

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + +T N  +     V +++K  E++R++Q     +P   +YT +I   C+AGR+ +A   
Sbjct: 116 DTITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSV 175

Query: 381 LAELVDGGSVPREYTYKLVCDALNAA 406
             +++  G+ P   TY ++ +    A
Sbjct: 176 YNDMLQSGTRPNTVTYNVLINGYGKA 201



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 23/260 (8%)

Query: 90  IANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVK 149
           I  N+LV G    +        +NK  E    ++R      N +T   +   + +   +K
Sbjct: 118 ITQNILVDGLCRVKQ-------VNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMK 170

Query: 150 GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
             +    DM + G      T +V  LI   G+   +  A+  ++++    C PDV  +N 
Sbjct: 171 DAFSVYNDMLQSGTRPNTVTYNV--LINGYGKALDMESAVRMYWQLILHSCPPDVVTFNS 228

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +I+  CR G  + A  +   ME+      P+VYT++I+I S C            + R  
Sbjct: 229 LIDGYCRCGQLDDAMRIW--MEMGQHHIQPNVYTFSIIIHSLCT-----------QNRSA 275

Query: 270 EANHLFR-LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
           EA  L R L +    VP    YN +ID  CK  +++ A  +  DM +KGC P++ TY   
Sbjct: 276 EALSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTIL 335

Query: 329 IRYYSVVNEIDKAIEMMRKM 348
           I  + +   I +A+ +  KM
Sbjct: 336 IIGHCMKGRIPEAVTLFHKM 355



 Score = 41.6 bits (96), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 28/144 (19%), Positives = 56/144 (38%)

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G+VPD   ++ +   C     ++ A  L    +  GC      YN+ +           
Sbjct: 5   SGYVPDAGFFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQD 64

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A+ +           P   S+  +I  +C  G + +A + +  + + G  P   T  ++ 
Sbjct: 65  AVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILV 124

Query: 401 DALNAAEEPSLLDDGLRKRIRDGI 424
           D L   ++ +   + LR+  RDG+
Sbjct: 125 DGLCRVKQVNKGHEVLRRLQRDGV 148


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 121/236 (51%), Gaps = 20/236 (8%)

Query: 172 VTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLE 228
           VTC  LI    +E  V +A+  F  M+   C+PDV  YNV+I   C+ G  ++A RFL  
Sbjct: 217 VTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFL-- 274

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
             +LP + C PDV ++ +++ S C  G           R  +A  L   ML KG +P VV
Sbjct: 275 -KKLPSYGCQPDVISHNMILRSLCSGG-----------RWMDAMKLLATMLRKGCLPSVV 322

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            +N LI+  C+   + +AL + + M K G  PN  ++N  I+ +     ID+AIE +  M
Sbjct: 323 TFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIM 382

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             ++ G  P   +Y  ++ ALC+ G+V +A   L++L   G  P   +Y  V D L
Sbjct: 383 --VSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGL 436



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 152/353 (43%), Gaps = 81/353 (22%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           + TCKE G+    G  +K       +M  +G    V T +V  LIK   + G ++EA+  
Sbjct: 224 DATCKESGV----GQAMK----LFNEMRNKGCKPDVVTYNV--LIKGFCKGGRLDEAIRF 273

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
             ++  + C+PDV ++N+++ +LC  G +  A  LL  M   G  C P V T+ ILI+  
Sbjct: 274 LKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKG--CLPSVVTFNILINFL 331

Query: 252 CKYGM---------------------------QTGCR-KAIRRRIWEANHLFRLMLFKGF 283
           C+ G+                           Q  C  K I R I        +M+ +G 
Sbjct: 332 CQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAI----EYLEIMVSRGC 387

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PD+V YN L+   CK  +++ A+ +   ++ KGC P+ ++YN+ I     V + + A+E
Sbjct: 388 YPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVE 447

Query: 344 MMRKM--QNLNHGVPTSSS--------------------------------YTPIIHALC 369
           ++ +M  + L   + T +S                                Y  II  LC
Sbjct: 448 LLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLC 507

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLLDDGLRKR 419
           ++ +   A DFLA++V  G  P E TY  +   +     AE+ S L + L  R
Sbjct: 508 KSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSR 560



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 123/251 (49%), Gaps = 21/251 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL+ M+ +G    V   + T LI+   + G    A      +++     DV +YNV+I+ 
Sbjct: 101 FLEYMTNKGKSPDVI--ACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISG 158

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+ G   +A  +L++M +      P+  TY  ++ S C  G           ++ +A  
Sbjct: 159 YCKSGEIEEALRVLDRMGVS-----PNAATYDAVLCSLCDRG-----------KLKQAMQ 202

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +    L     PDVV    LID  CK   + +A++LF++M  KGC P+ VTYN  I+ + 
Sbjct: 203 VLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFC 262

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               +D+AI  ++K+   ++G  P   S+  I+ +LC  GR ++A   LA ++  G +P 
Sbjct: 263 KGGRLDEAIRFLKKLP--SYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPS 320

Query: 393 EYTYKLVCDAL 403
             T+ ++ + L
Sbjct: 321 VVTFNILINFL 331



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 16/215 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++ A+     M    C PD+  YN+++ ALC+ G  + A  +L Q+   G  C P + +Y
Sbjct: 372 IDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKG--CSPSLISY 429

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             +I    K G           +   A  L   M +KG  PD++    ++ G  +  ++ 
Sbjct: 430 NTVIDGLLKVG-----------KAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVR 478

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A++ F  + +    PN   YNS I       +   AI+ +  M  +  G  PT ++YT 
Sbjct: 479 EAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADM--VAKGCKPTEATYTT 536

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           +I  +   G   +A     EL   G V R    K+
Sbjct: 537 LIKGITYEGLAEDASKLSNELYSRGLVKRSLVEKV 571



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 7/144 (4%)

Query: 261 RKAIRR-RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           R+ IR   + E +     M  KG  PDV+A   LI   CK  R + A ++   + + G +
Sbjct: 87  RRLIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAV 146

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
            +  +YN  I  Y    EI++A+ ++ +M     GV P +++Y  ++ +LC+ G++ +A 
Sbjct: 147 IDVTSYNVLISGYCKSGEIEEALRVLDRM-----GVSPNAATYDAVLCSLCDRGKLKQAM 201

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
             L   +     P   T  ++ DA
Sbjct: 202 QVLGRQLQSKCYPDVVTCTVLIDA 225


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 17/232 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           +CLI  L +EG + EA+  F RM K   C P+   YN +I+  CR+G  ++A  LLE+M 
Sbjct: 128 SCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMA 187

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G    PDV TYT L++ +CK             R+ +A  L   M  KG  P+VV + 
Sbjct: 188 ETGS--SPDVVTYTTLMNGFCKLA-----------RLDDAYDLLNQMTRKGLTPNVVTFT 234

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L+DG C+  R+  A+ +  +M +K C P   TYN+ +  Y  VN++++A + M +  + 
Sbjct: 235 SLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEMDC 294

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
               P   S+  +I  LC+  R  EA + + E       P    Y  V D L
Sbjct: 295 P---PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVL 343



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 118/260 (45%), Gaps = 25/260 (9%)

Query: 160 RRGNG-------ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           RRG G       E+ T  +   LI  L +    +EA      M    C PD++ Y  +I 
Sbjct: 38  RRGCGAAVQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLIT 97

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             C+    + A  + EQ+   GFR  PDV TY+ LI   CK G           R+ EA 
Sbjct: 98  GFCKSKKSDDALRVFEQLVARGFR--PDVVTYSCLIDGLCKEG-----------RLKEAI 144

Query: 273 HLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
            LF  M+  G  +P+ V YN LI G C+  +++ A+ L + M + G  P+ VTY + +  
Sbjct: 145 DLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNG 204

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           +  +  +D A +++ +M       P   ++T ++  LC   R+ +A   L E+      P
Sbjct: 205 FCKLARLDDAYDLLNQMTRKGL-TPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSP 263

Query: 392 REYTYKLVCDA---LNAAEE 408
             YTY  + D    +N  EE
Sbjct: 264 TVYTYNTILDGYCRVNQLEE 283



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 20/189 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   +   +D L  M+R+G    V T   T L+  L  E  +++A+     M++  C 
Sbjct: 205 FCKLARLDDAYDLLNQMTRKGLTPNVVT--FTSLMDGLCRENRLSDAVHILGEMRRKSCS 262

Query: 202 PDVYAYNVVINALCRVGNFNKAR-FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           P VY YN +++  CRV    +AR F+LE+M+     CPP+V ++ I+I   CK       
Sbjct: 263 PTVYTYNTILDGYCRVNQLEEARKFMLEEMD-----CPPNVVSFNIMIRGLCKVN----- 312

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM-NKKGCI 319
                 R  EA  L      +   PDVV Y  +ID  C+  +++ A  ++  M  + GC+
Sbjct: 313 ------RSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCL 366

Query: 320 PNRVTYNSF 328
           PN +TY++F
Sbjct: 367 PNSITYSTF 375


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 14/228 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L  VL + G++ EA+  F +MK+FR  P   + N +++   ++G  +  +   + M   G
Sbjct: 66  LFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAG 125

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R  P V+TY I+I   CK G            +  A  LF  M F+G VPD V YN +I
Sbjct: 126 AR--PTVFTYNIMIDCMCKEG-----------DVEAARGLFEEMKFRGLVPDTVTYNSMI 172

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K  R++  +  F++M    C P+ +TYN+ I  +    ++   +E  R+M+  N  
Sbjct: 173 DGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKG-NGL 231

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            P   SY+ ++ A C+ G + +A  F  ++   G VP EYTY  + DA
Sbjct: 232 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 279



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 135/291 (46%), Gaps = 20/291 (6%)

Query: 108 VTLG-LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL 166
           + LG L +A + +  ++RF   F    +C  +   FA+      +  F KDM   G G  
Sbjct: 71  IDLGMLEEAIQCFSKMKRF-RVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI--GAGAR 127

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
            T  +   +I  + +EG V  A   F  MK     PD   YN +I+   +VG  +     
Sbjct: 128 PTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCF 187

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
            E+M+     C PDV TY  LI+ +CK+G           ++      +R M   G  P+
Sbjct: 188 FEEMK--DMCCEPDVITYNALINCFCKFG-----------KLPIGLEFYREMKGNGLKPN 234

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           VV+Y+ L+D  CK   +++A++ + DM + G +PN  TY S I     +  +  A  +  
Sbjct: 235 VVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGN 294

Query: 347 KMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +M  L  GV  +  +YT +I  LC+A R+ EA +   ++   G +P   +Y
Sbjct: 295 EM--LQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASY 343



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 137/310 (44%), Gaps = 45/310 (14%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFY 193
           CKE  +  ARG          ++M  RG   LV  T +   +I   G+ G +++ +  F 
Sbjct: 141 CKEGDVEAARG--------LFEEMKFRG---LVPDTVTYNSMIDGFGKVGRLDDTVCFFE 189

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            MK   C PDV  YN +IN  C+ G          +M+  G +  P+V +Y+ L+ ++CK
Sbjct: 190 EMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLK--PNVVSYSTLVDAFCK 247

Query: 254 YGMQTGCRK---AIRR------------------RIWEANHLFRL---MLFKGFVPDVVA 289
            GM     K    +RR                  +I   +  FRL   ML  G   +VV 
Sbjct: 248 EGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVT 307

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  LIDG C   R++ A ELF  M+  G IPN  +YN+ I  +     +D+A+E++ +++
Sbjct: 308 YTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELK 367

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----N 404
               G+ P    Y   I  LC   ++  A+  + E+ + G       Y  + DA     N
Sbjct: 368 --GRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGN 425

Query: 405 AAEEPSLLDD 414
             E   LLD+
Sbjct: 426 PTEGLHLLDE 435



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 51/264 (19%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           +F ++M  +GNG      S + L+    +EG++ +A+  +  M++    P+ Y Y  +I+
Sbjct: 221 EFYREM--KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 278

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           A C++GN + A  L  +M   G     +V TYT LI   C              R+ EA 
Sbjct: 279 ANCKIGNLSDAFRLGNEMLQVGVEW--NVVTYTALIDGLCD-----------AERMKEAE 325

Query: 273 HLFRLM--------------LFKGFV---------------------PDVVAYNCLIDGC 297
            LF  M              L  GFV                     PD++ Y   I G 
Sbjct: 326 ELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGL 385

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C   +IE A  + ++M + G   N + Y + +  Y       + + ++ +M+ L+  V T
Sbjct: 386 CSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEV-T 444

Query: 358 SSSYTPIIHALCEAGRVLEARDFL 381
             ++  +I  LC+   V +A D+ 
Sbjct: 445 VVTFCVLIDGLCKNKLVSKAVDYF 468



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 13/209 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +  A      MK+   + +   Y  +++A  + GN  +   LL++M+         V T+
Sbjct: 391 IEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVT--VVTF 448

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            +LI   CK  + +   KA+       ++  R+    G   +   +  +IDG CK  ++E
Sbjct: 449 CVLIDGLCKNKLVS---KAV-------DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVE 498

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  LF+ M +KG +P+R  Y S +        + +A+ +  KM  +   +    +YT +
Sbjct: 499 AATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDL-LAYTSL 557

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPRE 393
           +  L    ++ +AR FL E++  G  P E
Sbjct: 558 VWGLSHCNQLQKARSFLEEMIGEGIHPDE 586



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 12/176 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+    + G   E L     MK+      V  + V+I+ LC+    +KA     ++  
Sbjct: 414 TTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRIS- 472

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
             F    +   +T +I   CK             ++  A  LF  M+ KG VPD  AY  
Sbjct: 473 NDFGLQANAAIFTAMIDGLCK-----------DNQVEAATTLFEQMVQKGLVPDRTAYTS 521

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           L+DG  K   +  AL L D M + G   + + Y S +   S  N++ KA   + +M
Sbjct: 522 LMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 577



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 23/226 (10%)

Query: 138 MGIVFARGNNVKGL--WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM 195
           M   F  GN  +GL   D +K++        VT  +   LI  L +  LV++A+  F R+
Sbjct: 417 MDAYFKSGNPTEGLHLLDEMKELDIE-----VTVVTFCVLIDGLCKNKLVSKAVDYFNRI 471

Query: 196 K-QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
              F  + +   +  +I+ LC+      A  L EQM   G    PD   YT L+    K 
Sbjct: 472 SNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL--VPDRTAYTSLMDGNFKQ 529

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G            + EA  L   M   G   D++AY  L+ G     ++++A    ++M 
Sbjct: 530 G-----------NVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMI 578

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            +G  P+ V   S ++ +  +  ID+A+E+   +  + H + TS +
Sbjct: 579 GEGIHPDEVLCISVLKKHYELGCIDEAVELQSYL--MKHQLLTSDN 622


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 29/228 (12%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G  + AL    +M +   + DV  Y  +I+ LC+ G+ +KA+ L  +M   G    P+V 
Sbjct: 59  GDTDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIF--PNVL 116

Query: 243 TYTILISSYCKYGMQTGCRKAIRR------------------------RIWEANHLFRLM 278
           TY  +I   C YG  T   + +R                         +I EA  L+R M
Sbjct: 117 TYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREM 176

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           L +   PD + YN LIDG CK  R++ A  +FD M  KG  PN +T N+ I        +
Sbjct: 177 LGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRV 236

Query: 339 DKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           D  I+++ +M  L  G VP S SY  +IH  C+AG +  A+D   E++
Sbjct: 237 DDGIKLLHEM--LRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEMI 282



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 122/257 (47%), Gaps = 19/257 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L  EG V EA A   RM +   +P+   Y  ++N +C++G+ + A  LL +M+   
Sbjct: 16  LMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLLRKMDESH 75

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +   DV  YT +I   CK G  +           +A +LF  M  KG  P+V+ YNC+I
Sbjct: 76  IK--ADVVIYTAIIDRLCKDGHHS-----------KAQNLFTEMHDKGIFPNVLTYNCMI 122

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DGCC   +   A +L  DM +    P+ VT+N+ I  +    +I +A E+ R+M   N  
Sbjct: 123 DGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNI- 181

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPS 410
            P + +Y  +I   C+  R+ +A+     +V  G  P   T   +    C A    +   
Sbjct: 182 FPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIK 241

Query: 411 LLDDGLRKR-IRDGIEY 426
           LL + LR+  + D + Y
Sbjct: 242 LLHEMLRRGLVPDSVSY 258



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 13/175 (7%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           C+I      G   +A      M +    PDV  +N +INA  + G  ++A  L  +M   
Sbjct: 120 CMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREM--L 177

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    PD  TY  LI  +CK+            R+ +A H+F LM+ KG  P+V+  N L
Sbjct: 178 GRNIFPDTITYNSLIDGFCKHS-----------RLDDAKHIFDLMVSKGGSPNVITINTL 226

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           I GCC+  R++  ++L  +M ++G +P+ V+YN+ I  +    +++ A ++ ++M
Sbjct: 227 IGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEM 281



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 1/125 (0%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+ KG   DVVA+N L++G C+  R+  A  L D M + G  PN VTY + +     + +
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            D A+ ++RKM   +H       YT II  LC+ G   +A++   E+ D G  P   TY 
Sbjct: 61  TDSALNLLRKMDE-SHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYN 119

Query: 398 LVCDA 402
            + D 
Sbjct: 120 CMIDG 124


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 109/230 (47%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++K L   G V EA+     M +    PD+ +YN +IN LC+     +A  LL +ME  G
Sbjct: 150 VLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAG 209

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+  T T L+   CK G           R+ EA  L   M  KGF  DVV Y  LI
Sbjct: 210 --CFPNSVTCTTLMDGLCKDG-----------RMDEAMELLEAMKKKGFDADVVLYGTLI 256

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C    ++R  ELFD+M  KG   N VTY+  +     + +  +A  ++  M    HG
Sbjct: 257 SGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMA--EHG 314

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + P   +YT +I  LC+ GR   A D L  +V+ G  P   TY ++   L
Sbjct: 315 IHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGL 364



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 16/243 (6%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G      + +CL+  L   G   EA      M +    PDV  Y  +I+ LC+ G   
Sbjct: 277 GKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRAT 336

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
            A  LL  M   G    P   TY +L+S  CK G+           + +A  + R+M+ K
Sbjct: 337 HAMDLLNLMVEKGEE--PSNVTYNVLLSGLCKEGL-----------VIDAFKILRMMIEK 383

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDM-NKKGCI-PNRVTYNSFIRYYSVVNEID 339
           G   DVV YN L+ G C   +++ AL+LF+ M + + C+ PN  T+N  I        + 
Sbjct: 384 GKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLT 443

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           KA+++ RKM           +Y  ++    +AG++ EA +   +++D G VP  +TY ++
Sbjct: 444 KAVKIHRKMVK-KGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSIL 502

Query: 400 CDA 402
            D 
Sbjct: 503 IDG 505



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 22/240 (9%)

Query: 170 SSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           +SVTC  L+  L ++G ++EA+     MK+     DV  Y  +I+  C  GN ++ + L 
Sbjct: 213 NSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELF 272

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EANHLFRLMLFKGFVPD 286
           ++M   G     +V TY+ L+   C+ G             W EAN +   M   G  PD
Sbjct: 273 DEMLGKGI--SANVVTYSCLVHGLCRLGQ------------WKEANTVLNAMAEHGIHPD 318

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           VV Y  LIDG CK  R   A++L + M +KG  P+ VTYN  +        +  A +++R
Sbjct: 319 VVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILR 378

Query: 347 KMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSV--PREYTYKLVCDAL 403
            M  +  G      +Y  ++  LC+ G+V EA      + D  +   P  +T+ ++   L
Sbjct: 379 MM--IEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGL 436



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 123/297 (41%), Gaps = 31/297 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D L  M  +G  E  +  +   L+  L +EGLV +A      M +   + DV  YN ++ 
Sbjct: 340 DLLNLMVEKG--EEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMK 397

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT-------------- 258
            LC  G  ++A  L   M        P+V+T+ +LI   CK G  T              
Sbjct: 398 GLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGS 457

Query: 259 ------------GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
                       GC KA   +I EA  L++ +L  GFVP+   Y+ LIDG CK   +  A
Sbjct: 458 CGNLVTYNMLLGGCLKA--GKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIA 515

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
             LF +M   G  P    YN+ +        +++A  + ++M N N   P   S+  +I 
Sbjct: 516 KGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANC-EPDIISFNTMID 574

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
              +AG     ++   ++V+ G  P   T+  + + L+   E       L + +  G
Sbjct: 575 GTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASG 631



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 108/279 (38%), Gaps = 68/279 (24%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME----LPGF------- 235
           EA++ F+    F   P     N +++AL R  N+  A  +  +M     LP F       
Sbjct: 57  EAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALI 116

Query: 236 RCPPDV-----------------YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
            C  D                  +T  + I +    G+   CR      ++EA  L R M
Sbjct: 117 ECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGL---CRNG---GVFEAMGLIREM 170

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
             K   PD+V+YN LI+G CK  +++ A+ L  +M   GC PN VT  + +        +
Sbjct: 171 GRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRM 230

Query: 339 DKAIEMMRKMQ----------------------NLNHG------------VPTSSSYTPI 364
           D+A+E++  M+                      NL+ G                 +Y+ +
Sbjct: 231 DEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCL 290

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +H LC  G+  EA   L  + + G  P   TY  + D L
Sbjct: 291 VHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGL 329



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 13/155 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L +EG + +A + F  M    C PD+ ++N +I+   + G+F   + L  +M   G
Sbjct: 537 LMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMG 596

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R  PD  T++ LI+   K G     + A+ R           M+  GF PD + Y+ L+
Sbjct: 597 LR--PDALTFSTLINRLSKLGELDEAKSALER-----------MVASGFTPDALVYDSLL 643

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            G          + L   M  KG + +R   ++ +
Sbjct: 644 KGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTIL 678



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 13/117 (11%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M +   RPD   ++ +IN L ++G  ++A+  LE+M   GF   PD   Y  L+     
Sbjct: 591 KMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGF--TPDALVYDSLLKGLSS 648

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            G  T           E  +L   M  KG V D    + ++   C + +    +EL 
Sbjct: 649 KGDTT-----------EIINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELL 694


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 20/251 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+ L + G V +AL+    M +  C+P V  Y V++ A+C+   F +A  +L++M  
Sbjct: 141 TPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRA 200

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C P++ TY ++I+  C+             R+ +A  +   +   GF PD V+Y  
Sbjct: 201 KG--CTPNIVTYNVIINGMCR-----------EDRVDDARQILNRLSSYGFQPDTVSYTT 247

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           ++ G C   R E    LF +M +  C+PN VT++  +R++     +++AIE++ +M    
Sbjct: 248 VLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMS--E 305

Query: 353 HGVPTSSSYTPI-IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAE 407
           HG   +++   I I+++C+ GRV +A +FL  +   G  P   +Y  V    C A    +
Sbjct: 306 HGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWED 365

Query: 408 EPSLLDDGLRK 418
              LL++ +RK
Sbjct: 366 AKELLNEMVRK 376



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 135/303 (44%), Gaps = 28/303 (9%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEA 188
           NE+T   +   F RG  V+   + L  MS  G     T ++  C  +I  + ++G V++A
Sbjct: 276 NEVTFDMLVRFFCRGGMVERAIEVLDRMSEHG----CTANTTLCNIVINSICKQGRVDDA 331

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
                 M  + C PD  +Y  V+  LCR G +  A+ LL +M      CPP+  T+   I
Sbjct: 332 FEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKN--CPPNEVTFNTFI 389

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
              C+ G+           I +A  L   M   G    +V YN L++G C   R++ ALE
Sbjct: 390 CILCQKGL-----------IDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALE 438

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           LF   N   C PN +TY + +        +D A E++ +M   N       ++  ++   
Sbjct: 439 LF---NSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQ-NDCPLNVVTFNVLVSFF 494

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRKRIR-DG 423
           C+ G V EA + + ++++ G  P   T+  + D +    N+ E   LL   + K I  D 
Sbjct: 495 CQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDT 554

Query: 424 IEY 426
           I Y
Sbjct: 555 ITY 557



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 17/222 (7%)

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           +G V+ AL  F       C P+   Y  ++  LC     + A  LL +M      CP +V
Sbjct: 430 QGRVDSALELF---NSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQND--CPLNV 484

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            T+ +L+S +C+ G            + EA  L + M+  G  P+++ +N L+DG  +  
Sbjct: 485 VTFNVLVSFFCQKGF-----------VEEAIELVQQMMEHGCTPNLITFNTLLDGITEDC 533

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
             E ALEL   +  KG   + +TY+S +   S  + I++A++M   +Q++    P +  Y
Sbjct: 534 NSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMR-PKAVMY 592

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             I+ ALC+      A DF A +V    +P E TY ++ + L
Sbjct: 593 NKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGL 634



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 129/326 (39%), Gaps = 72/326 (22%)

Query: 148 VKGLWD---------FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
           ++GL D          L DM RR     V T +V  L++ + +     +A+     M+  
Sbjct: 144 IRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTV--LLEAVCKSSGFGQAMKVLDEMRAK 201

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR---------------------- 236
            C P++  YNV+IN +CR    + AR +L ++   GF+                      
Sbjct: 202 GCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDV 261

Query: 237 -----------CPPDVYTYTILISSYCKYGM------------QTGCRKAI--------- 264
                      C P+  T+ +L+  +C+ GM            + GC             
Sbjct: 262 EVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINS 321

Query: 265 ---RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              + R+ +A      M   G  PD ++Y  ++ G C+  R E A EL ++M +K C PN
Sbjct: 322 ICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPN 381

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VT+N+FI        ID+AI ++ +M      V    +Y  +++  C  GRV  A +  
Sbjct: 382 EVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGI-VTYNALVNGFCVQGRVDSALELF 440

Query: 382 AELVDGGSVPREYTYKLVCDALNAAE 407
             L      P   TY  +   L  AE
Sbjct: 441 NSL---PCEPNTITYTTLLTGLCHAE 463



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 91/206 (44%), Gaps = 17/206 (8%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDVY    +I  LCR G  + A  +L   E  G   P DV+ Y  L++ YC+YG     R
Sbjct: 68  PDVYLCTKLIRNLCRRGRTSDAARVLRTAE--GSGAPVDVFAYNTLVAGYCRYGRLDAAR 125

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                         RL+      PD   Y  LI G C   R+  AL L DDM ++ C P+
Sbjct: 126 --------------RLIASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPS 171

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VTY   +      +   +A++++ +M+      P   +Y  II+ +C   RV +AR  L
Sbjct: 172 VVTYTVLLEAVCKSSGFGQAMKVLDEMR-AKGCTPNIVTYNVIINGMCREDRVDDARQIL 230

Query: 382 AELVDGGSVPREYTYKLVCDALNAAE 407
             L   G  P   +Y  V   L AA+
Sbjct: 231 NRLSSYGFQPDTVSYTTVLKGLCAAK 256



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+    ++G V EA+    +M +  C P++  +N +++ +    N  +A  LL  +   G
Sbjct: 490 LVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKG 549

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                D  TY+ ++    +             RI EA  +F  +   G  P  V YN ++
Sbjct: 550 ISL--DTITYSSIVDVLSR-----------EDRIEEAVQMFHAVQDMGMRPKAVMYNKIL 596

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
              CK    +RA++ F  M    C+PN  TY
Sbjct: 597 SALCKRCETDRAIDFFAHMVSNSCMPNESTY 627



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  + T + + ++ VL  E  + EA+  F+ ++    RP    YN +++ALC+    ++A
Sbjct: 549 GISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRA 608

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
                 M      C P+  TY ILI    + G+
Sbjct: 609 IDFFAHM--VSNSCMPNESTYVILIEGLAREGL 639


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 127/277 (45%), Gaps = 27/277 (9%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  +T ++   L+  L  +G   EA      M      PDV+ YN++IN  C+ GN  KA
Sbjct: 174 GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKA 233

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK----AIRR------------- 266
             + E M   G R    V TYT LI +  K G      K    A+RR             
Sbjct: 234 LEIFENMSRRGVRAT--VVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI 291

Query: 267 -------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   I  A  +   M  K   PD V YN L+ G C   R++ A +L D+M K+G  
Sbjct: 292 NSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQ 351

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ VTYN+ I  YS+  ++  A+ +  +M N     PT  +Y  +I  LC+ G+  +A +
Sbjct: 352 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFN-PTLLTYNALIQGLCKNGQGDDAEN 410

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            + E+V+ G  P + TY  + + L   +E ++ D+ L
Sbjct: 411 MVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERL 447



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 117/266 (43%), Gaps = 34/266 (12%)

Query: 113 NKATEFYHWVERFFD-------FFHNEMT---CKEMGIVFARGNNVKGLWDFLKDMSRRG 162
            + TE Y  VE           F +N +    CKE         NVK   +  ++MSRRG
Sbjct: 193 GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKE--------GNVKKALEIFENMSRRG 244

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
               V T   T LI  L ++G V E    F    +   RPD+  YN +IN+    GN ++
Sbjct: 245 VRATVVT--YTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDR 302

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  ++ +ME    R  PD  TY  L+   C  G           R+ EA  L   M  +G
Sbjct: 303 AFEIMGEMEKK--RIAPDDVTYNTLMRGLCLLG-----------RVDEARKLIDEMTKRG 349

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PD+V YN LI G      ++ AL + ++M  KG  P  +TYN+ I+      + D A 
Sbjct: 350 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 409

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHAL 368
            M+++M   N   P  S+Y  +I  L
Sbjct: 410 NMVKEMVE-NGITPDDSTYISLIEGL 434



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 26/239 (10%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           ++T+S+  L+  L        A A F  M + R       +N+++  LC  G   +A  L
Sbjct: 8   ISTASLHPLLSALPSA----PAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALEL 63

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-P 285
           L QM        P+  TY  +I+ +C  G           R+  A  + R M  +G + P
Sbjct: 64  LRQMP------RPNAVTYNTVIAGFCSRG-----------RVQAALDIMREMRERGGIAP 106

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEM 344
           +   Y  +I G CK  R++ A+++FD+M  KG + P  V YN+ I  Y    ++D A+  
Sbjct: 107 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 166

Query: 345 MRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             +M  +  GV  T ++Y  ++HAL   GR  EA + + E+   G  P  +TY ++ + 
Sbjct: 167 RDRM--VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILING 223



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 109/271 (40%), Gaps = 55/271 (20%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T++   +++ L   G    AL    +M     RP+   YN VI   C  G    A  ++ 
Sbjct: 41  TTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMR 96

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PDV 287
           +M   G    P+ YTY  +IS +CK G           R+ EA  +F  ML KG V P+ 
Sbjct: 97  EMRERG-GIAPNQYTYGTVISGWCKVG-----------RVDEAVKVFDEMLTKGEVKPEA 144

Query: 288 VAYNCLIDGCCKTYRIERAL-----------------------------------ELFDD 312
           V YN LI G C   +++ AL                                   EL ++
Sbjct: 145 VMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE 204

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEA 371
           M  KG  P+  TYN  I  +     + KA+E+   M     GV  T  +YT +I+AL + 
Sbjct: 205 MGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS--RRGVRATVVTYTSLIYALSKK 262

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           G+V E      E V  G  P    Y  + ++
Sbjct: 263 GQVQETDKLFDEAVRRGIRPDLVLYNALINS 293



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 16/170 (9%)

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R P    T+ I++   C  G           +   A  L R M      P+ V YN +I
Sbjct: 35  LRLPLCTTTFNIMLRHLCSAG-----------KPARALELLRQMPR----PNAVTYNTVI 79

Query: 295 DGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
            G C   R++ AL++  +M ++G I PN+ TY + I  +  V  +D+A+++  +M     
Sbjct: 80  AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 139

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P +  Y  +I   C+ G++  A  +   +V+ G      TY L+  AL
Sbjct: 140 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 189


>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 484

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 138/281 (49%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 175 L-IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L I   G+EG+V E++  F +M++      + +Y+ +   + R G F  A+    +M   
Sbjct: 85  LMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDV+ YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVITYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G C+  ++E A + F +M  K   P  VTY + I+ Y  V+++D A+ ++ +M+   +
Sbjct: 192 INGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMK--GY 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E+VD    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTD 290



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 90/251 (35%), Gaps = 60/251 (23%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G V  A   F  MK     PDV  YN +IN  CRV    +A      +E+ G    P V 
Sbjct: 164 GKVETANRFFEDMKSREISPDVITYNTMINGYCRVKKMEEAEKYF--VEMKGKNIEPTVV 221

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TYT LI  Y               ++ +A  L   M   G  P+ + Y+ L+ G C   +
Sbjct: 222 TYTTLIKGYVSVD-----------QVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEK 270

Query: 303 IERALELFDDMNKKGCIPNRVT------------------------------------YN 326
           +  A  +  +M  K   P   +                                    Y 
Sbjct: 271 MSEARSILKEMVDKYIAPTDNSIFMRLISSHCKVGNLDAAADVLKAMIRLSVPTEAGHYG 330

Query: 327 SFIRYYSVVNEIDKAIEMMRKM---------QNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             I  Y    + D+A++++ K+         Q+  H  P  S+Y PI+  LC  G+  +A
Sbjct: 331 VLIENYCKAGQYDQAVKLLDKLIEKDIIVRPQSTLHMEP--SAYNPIVEYLCNNGQTSKA 388

Query: 378 RDFLAELVDGG 388
              + +L+  G
Sbjct: 389 EALVRQLMKLG 399



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 22/222 (9%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK +  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G            +  A  + + M+      + 
Sbjct: 279 KEM-VDKYIAPTDNSIFMRLISSHCKVG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCI--PNRV------TYNSFIRYYSVVNEID 339
             Y  LI+  CK  + ++A++L D + +K  I  P          YN  + Y     +  
Sbjct: 327 GHYGVLIENYCKAGQYDQAVKLLDKLIEKDIIVRPQSTLHMEPSAYNPIVEYLCNNGQTS 386

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           KA  ++R++  L  GV   ++   +I    + G    A + L
Sbjct: 387 KAEALVRQLMKL--GVQDPTALNTLIRGHSQEGSPDSAFELL 426


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 120/234 (51%), Gaps = 17/234 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           + L  ++   G V  +    YR M + R  P+VY YN++I   C VG   K      +ME
Sbjct: 182 SVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEME 241

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G  C P+V TY  LI +YCK G           RI EA  L + M  KG  P++++YN
Sbjct: 242 RNG--CLPNVVTYNTLIDAYCKMG-----------RIDEAFGLLKSMSSKGMQPNLISYN 288

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +I+G C+   ++ A E+ ++M  KG  P+ VTYN+ +  Y       +A+ +  +M  +
Sbjct: 289 VIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM--V 346

Query: 352 NHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
            +GV P+  +YT +I+++C+A  +  A +F  ++   G  P E TY  + D  +
Sbjct: 347 RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFS 400



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 143/288 (49%), Gaps = 35/288 (12%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCR 201
           R  ++K  W+ L++M  +G     T   VT   L+    +EG  ++AL     M +    
Sbjct: 296 REGSMKEAWEILEEMGYKG----FTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVS 351

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM----- 256
           P V  Y  +IN++C+  N N+A    +QM + G R  P+  TYT LI  + + G+     
Sbjct: 352 PSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLR--PNERTYTTLIDGFSRQGLLNEAY 409

Query: 257 -------QTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                  ++G   ++              R+ EA  + + M+ KG  PDVV+Y+ +I G 
Sbjct: 410 RILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGF 469

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C+   ++RA ++  +M +KG  P+ VTY+S I+    +  + +A ++ ++M  L+ G+P 
Sbjct: 470 CRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM--LDMGLPP 527

Query: 358 SS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
              +YT +I+A C  G + +A     E++  G +P   TY ++ + LN
Sbjct: 528 DEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLN 575



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 118/251 (47%), Gaps = 17/251 (6%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           KGL  F  +M R  NG L    +   LI    + G ++EA      M     +P++ +YN
Sbjct: 232 KGLGCF-GEMER--NGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYN 288

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
           V+IN LCR G+  +A  +LE+M   GF   PD  TY  L++ YCK G             
Sbjct: 289 VIINGLCREGSMKEAWEILEEMGYKGF--TPDEVTYNTLLNGYCKEG-----------NF 335

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +A  +   M+  G  P VV Y  LI+  CK   + RA+E FD M  +G  PN  TY + 
Sbjct: 336 HQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTL 395

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           I  +S    +++A  ++ +M       P+  +Y   IH  C   R+ EA   + E+V+ G
Sbjct: 396 IDGFSRQGLLNEAYRILNEMTESGFS-PSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 454

Query: 389 SVPREYTYKLV 399
             P   +Y  +
Sbjct: 455 LAPDVVSYSTI 465



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 161/356 (45%), Gaps = 35/356 (9%)

Query: 52  LKSIPRF-FFQSPRSIGRQTGFRHRTPLRQRILK--KEAYNIANN---VLVLGPAAYR-- 103
           L  + RF  +++ +++ ++       P    I +  K++Y++ N+   V  L   +Y   
Sbjct: 96  LHILTRFKLYKTAQTLAQELALSASDPSGSSIFQCLKDSYHVYNSSSAVFDLMVKSYSHL 155

Query: 104 ---DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSR 160
              D    T+ L K++ F   V  +              IV +RG+      +  ++M R
Sbjct: 156 NMIDQAVNTINLAKSSGFMPGVLSYNSVLD--------AIVRSRGSVKLSAEEVYREMIR 207

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
                 V T ++  LI+     G + + L  F  M++  C P+V  YN +I+A C++G  
Sbjct: 208 SRVSPNVYTYNI--LIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRI 265

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           ++A  LL+ M   G +  P++ +Y ++I+  C+ G          +  WE   +   M +
Sbjct: 266 DEAFGLLKSMSSKGMQ--PNLISYNVIINGLCREGSM--------KEAWE---ILEEMGY 312

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           KGF PD V YN L++G CK     +AL +  +M + G  P+ VTY + I        +++
Sbjct: 313 KGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNR 372

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           A+E   +M+ +    P   +YT +I      G + EA   L E+ + G  P   TY
Sbjct: 373 AMEFFDQMR-IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 427



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 160/391 (40%), Gaps = 88/391 (22%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           LN+A EF+  + R      NE T   +   F+R   +   +  L +M+  G    V T +
Sbjct: 370 LNRAMEFFDQM-RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYN 428

Query: 172 V----TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
                 C+++ +       EAL     M +    PDV +Y+ +I+  CR G  ++A  + 
Sbjct: 429 AFIHGHCVLERM------EEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMK 482

Query: 228 EQM---------------------------------ELPGFRCPPDVYTYTILISSYCKY 254
           ++M                                 E+     PPD +TYT LI++YC  
Sbjct: 483 QEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVE 542

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G            + +A HL   M+ KGF+PD V Y+ LI+G  K  R   A  L   + 
Sbjct: 543 G-----------DLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLI 591

Query: 315 KKGCIPNRVTYNSF------IRYYSVV------------NEIDKAIEMMRKMQNLNHGVP 356
            +  +P+ VTY++       I + SVV            +E D+  E M +    NH  P
Sbjct: 592 YEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVER---NHK-P 647

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPS-LL 412
             + Y  IIH  C  G + +A +   E++  G VP   T   +  AL      EE S ++
Sbjct: 648 GEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVI 707

Query: 413 DDGLRK-RIRDGIEYRFRQVMKVKPIMKHKE 442
            D LR  R+ +       ++ KV   + HKE
Sbjct: 708 GDTLRSCRLNEA------ELAKVLVEINHKE 732



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 99/253 (39%), Gaps = 65/253 (25%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPG--------FRCPPDVY--------TYTI 246
           D +   + ++ L R   +  A+ L +++ L          F+C  D Y         + +
Sbjct: 88  DSHCKCLSLHILTRFKLYKTAQTLAQELALSASDPSGSSIFQCLKDSYHVYNSSSAVFDL 147

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID----------- 295
           ++ SY    M           I +A +   L    GF+P V++YN ++D           
Sbjct: 148 MVKSYSHLNM-----------IDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKL 196

Query: 296 --------------------------GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
                                     G C    +++ L  F +M + GC+PN VTYN+ I
Sbjct: 197 SAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLI 256

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             Y  +  ID+A  +++ M +     P   SY  II+ LC  G + EA + L E+   G 
Sbjct: 257 DAYCKMGRIDEAFGLLKSMSSKGMQ-PNLISYNVIINGLCREGSMKEAWEILEEMGYKGF 315

Query: 390 VPREYTYKLVCDA 402
            P E TY  + + 
Sbjct: 316 TPDEVTYNTLLNG 328


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 138/285 (48%), Gaps = 33/285 (11%)

Query: 113 NKATEFYHWVERFFDFFHN-EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           N    F   ++R  + +++ E+  K +G+V A+G     L   + ++   G  +     S
Sbjct: 194 NSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVL---MFNLVINGFCKAKDLDS 250

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              L++V+ E+G                C P+V+ + ++I  LC+     +A+ LLE+M 
Sbjct: 251 AYKLLEVMIEKG----------------CVPNVFTFTILITGLCKANRVGEAQQLLEKMV 294

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
           + G  C P+V TY+ +I+  CK G           ++ +A  LF+LM  +   P+VV +N
Sbjct: 295 MGG--CSPNVVTYSTVINGLCKQG-----------QVDDAYELFQLMERRNCPPNVVTHN 341

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            LIDG CK  RIE A +L+  M + GC P+ +TYNS I       ++D+A ++ + +   
Sbjct: 342 ILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPES 401

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
                 + +Y+ + H     GR+ +A    + LVD G  P   TY
Sbjct: 402 GVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATY 446



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 136/328 (41%), Gaps = 72/328 (21%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             + N V      L+ M   G    V T S   +I  L ++G V++A   F  M++  C 
Sbjct: 277 LCKANRVGEAQQLLEKMVMGGCSPNVVTYST--VINGLCKQGQVDDAYELFQLMERRNCP 334

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM----- 256
           P+V  +N++I+ LC+     +AR L  +M   G  C PD+ TY  LI   CK        
Sbjct: 335 PNVVTHNILIDGLCKAKRIEEARQLYHRMRETG--CAPDIITYNSLIDGLCKSFQVDEAF 392

Query: 257 -------QTGCRKA-------------IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                  ++G   A                R+ +A  +F +++ KGF PD+  Y  LI  
Sbjct: 393 QLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILE 452

Query: 297 CCKTYR-----------------------------------IERALELFDDMNKKGCIPN 321
            CKT R                                    ERA++LFD M  +GC  +
Sbjct: 453 YCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDD 512

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKM-----QNLNHGVPTSSSYTPIIHALCEAGRVLE 376
            + YN  +   +  ++ DKA+ ++ ++     +  N   P+SS+   ++ +LC+ G+  +
Sbjct: 513 ALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFN---PSSSAVDALVESLCQVGKTDD 569

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDALN 404
           A+  L ++ + G      +Y  +   L+
Sbjct: 570 AKQLLHKMSERGFAAAVSSYNRLLSGLS 597



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 118/302 (39%), Gaps = 82/302 (27%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S  C + +L       EALA F       C P+ + Y ++I      G+ + A  LLE+M
Sbjct: 24  SCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEM 83

Query: 231 ELPGFR--------------------------------CPPDVYTYTILISSYCKYGMQT 258
           +  GF                                 C PDV TYT L+ + CK G   
Sbjct: 84  KSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAG--- 140

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM----- 313
                   +  EA  + R M+ +G  PD V ++ LIDG CK    E+A  + +D+     
Sbjct: 141 --------KFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGM 192

Query: 314 ---------------NK----------------KGCIPNRVTYNSFIRYYSVVNEIDKAI 342
                          NK                KG  P  + +N  I  +    ++D A 
Sbjct: 193 GNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAY 252

Query: 343 EMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           +++  M  +  G VP   ++T +I  LC+A RV EA+  L ++V GG  P   TY  V +
Sbjct: 253 KLLEVM--IEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVIN 310

Query: 402 AL 403
            L
Sbjct: 311 GL 312



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 16/232 (6%)

Query: 172 VTCLIKVLG---EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           V  L  VLG   E      A+  F  M    C  D   YN+V+  + R    +KA  +LE
Sbjct: 478 VNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLE 537

Query: 229 Q-MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           Q ++    +  P       L+ S C+ G           +  +A  L   M  +GF   V
Sbjct: 538 QVIDKRDRKFNPSSSAVDALVESLCQVG-----------KTDDAKQLLHKMSERGFAAAV 586

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
            +YN L+ G  +  R + A ++F+ M   G  P   T N  I +     ++D A E++++
Sbjct: 587 SSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQR 646

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           M  L    P   +   +I   C++GR   AR  L E+ + G  P + T+ L+
Sbjct: 647 MSKLGC-CPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 697



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 33/151 (21%)

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           +V + NC +D  C+  R + AL LF +   + C+PN+ TY   IR +S   ++D AI+++
Sbjct: 21  NVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLL 80

Query: 346 RKMQN--------------------------LNH-------GVPTSSSYTPIIHALCEAG 372
            +M++                          L H         P   +YT ++HALC+AG
Sbjct: 81  EEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAG 140

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  EA+  L E+V  G  P   T+  + D L
Sbjct: 141 KFDEAQGMLREMVAQGCAPDTVTFSTLIDGL 171


>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
 gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 132/282 (46%), Gaps = 16/282 (5%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ W  +   + H     K M  V ++      +W  L++M RR N  L+T+     
Sbjct: 98  AYKFFVWASKQPCYRHCYENYKAMIKVLSKMKQFGAVWALLEEM-RRDNSVLITSEVFVV 156

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++      +VN+A+     M ++ C PD Y +  +++ALC+ G+  +A  L E M +  
Sbjct: 157 VMRRFASSRMVNKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRV-- 214

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R  P +  +T L+  +CK G           ++ EA H+   M   GF PD+V YN L+
Sbjct: 215 -RFSPSLKHFTCLLYGWCKEG-----------KLLEAKHVLVQMREAGFEPDIVVYNNLL 262

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G     ++  A +L  ++ +KGC PN  +Y   I+      ++D+A+ +  +M+     
Sbjct: 263 SGYATAGKMGDAFDLLKEIRRKGCDPNATSYTILIQALCGQEKMDEAMRVFVEMERSGCD 322

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
                +YT ++   C+   + +    L  ++  G +P + TY
Sbjct: 323 ADV-VTYTALVSGFCKWRMIDKGYQILQSMIQKGHMPNQLTY 363



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 62/274 (22%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + +A      +++  C P+  +Y ++I ALC     ++A  +  +ME  G  C  DV 
Sbjct: 269 GKMGDAFDLLKEIRRKGCDPNATSYTILIQALCGQEKMDEAMRVFVEMERSG--CDADVV 326

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEA---NHL--FRLMLFK---------------- 281
           TYT L+S +CK+ M     + ++  I +    N L    LML                  
Sbjct: 327 TYTALVSGFCKWRMIDKGYQILQSMIQKGHMPNQLTYLHLMLAHEKKEELEECKELMGEM 386

Query: 282 ---GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY----NSFI----- 329
              G +PD+  YN +I   CK   +   ++ +++M   G  P   T+    N F+     
Sbjct: 387 QKIGCIPDLSIYNVVIRLACKLGEVNAGVDAWNEMEVSGLSPGLDTFVIMINGFLGHGYL 446

Query: 330 ------------------RYYSVVNEIDKAI---EMMRKMQNLNHGVPTSS------SYT 362
                             R Y ++ ++  A+   E +   ++L   + T        S+T
Sbjct: 447 VEACQYFKEMVERGLLSSRQYGILKDLLNALLRGEKLELAKDLWSCIVTKGCELNVDSWT 506

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             IHAL   G V EA  +  +++D   +P+  T+
Sbjct: 507 IWIHALFSNGHVKEACSYCLDMMDADLMPKPETF 540



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 23/209 (11%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M++  C PD+  YNVVI   C++G  N       +ME+ G    P + T+ I+I+ +  +
Sbjct: 386 MQKIGCIPDLSIYNVVIRLACKLGEVNAGVDAWNEMEVSGL--SPGLDTFVIMINGFLGH 443

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD--VVAYNCLIDGCCKTYRIERALELFDD 312
           G            + EA   F+ M+ +G +          L++   +  ++E A +L+  
Sbjct: 444 GY-----------LVEACQYFKEMVERGLLSSRQYGILKDLLNALLRGEKLELAKDLWSC 492

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           +  KGC  N  ++  +I        + +A      M + +  +P   ++  ++  L    
Sbjct: 493 IVTKGCELNVDSWTIWIHALFSNGHVKEACSYCLDMMDADL-MPKPETFAKLMRGL---- 547

Query: 373 RVLEARDFLAEL---VDGGSVPREYTYKL 398
           R L  R F AE+   V   +  R  T+K+
Sbjct: 548 RKLYNRQFAAEITEKVRKMAADRHVTFKM 576


>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 484

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 139/281 (49%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +  A+ R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKAILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PARHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC AG+++EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAGKMIEARSILKEMMDKYLAPTD 290



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 25/214 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA   F  MK     P V  Y  +I     V   + A  L+E+M+  GF   P+  TY
Sbjct: 201 MEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMK--GFGIKPNAITY 258

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRI 303
           + L+   C  G           ++ EA  + + M+ K   P D   +  LI   C +  +
Sbjct: 259 STLLPGLCNAG-----------KMIEARSILKEMMDKYLAPTDNSIFMRLISSQCNSGNL 307

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM---------QNLNHG 354
           + A ++   M +         Y   I  +    + D+A++++ K+         Q+  H 
Sbjct: 308 DAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDIILRPQSTLHL 367

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            P  S+Y P+I  LC  G+  +A   + +L+  G
Sbjct: 368 EP--SAYNPMIEYLCNNGQAAKAEALVRQLLKLG 399


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 129/278 (46%), Gaps = 20/278 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V  R   +      +K M   G G  V T +V  LI  L   G +++A+  F +MK    
Sbjct: 273 VLGRAGRIDEACRIMKRMEDDGCGPDVVTYTV--LIDALCTAGKLDDAMELFVKMKASSH 330

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PD   Y  +++     G+  + +    +ME  G+   PDV T+TIL+++ CK G     
Sbjct: 331 KPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGY--APDVITFTILVNALCKAG----- 383

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  I EA HL  +M  +G +P++  YN LI G  +  R++ AL+LF++M   G +P
Sbjct: 384 ------NIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVP 437

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
              TY  FI +Y      DKA+E   KM+ +    P   +    +++L E GR+ EA+  
Sbjct: 438 TAYTYILFIDFYGKSGRSDKALETFEKMK-IRGIAPNIVACNASLYSLAEMGRLREAKVI 496

Query: 381 LAELVDGGSVPREYTYKLVCDALNAA----EEPSLLDD 414
              L   G  P   TY ++    + A    E   LL D
Sbjct: 497 FNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSD 534



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 118/243 (48%), Gaps = 21/243 (8%)

Query: 183  GLVNEALA--TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
            G+ N+ +A   F  MK   C PDV+ YN++++A  + G  N+   L EQM      C P+
Sbjct: 802  GVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSS--CKPN 859

Query: 241  VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
              T+ I+I++  K              + +A  LF  ++   F P    Y  L+DG  K+
Sbjct: 860  TITHNIIIANLVK-----------SNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKS 908

Query: 301  YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSS 359
             R+E A ELF++M   GC PN   YN  I  +    +++ A E+ ++M  +  G+ P   
Sbjct: 909  GRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRM--VREGIRPDLK 966

Query: 360  SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA---EEPSLLDDGL 416
            SYT ++  LCEAGRV +A  +  +L   G       Y L+ D L  +   EE   L D +
Sbjct: 967  SYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEM 1026

Query: 417  RKR 419
            + R
Sbjct: 1027 QSR 1029



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 14/222 (6%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            L+  L + G + EA   F  M  + CRP+   YN++IN   + G+ N A  L ++M   G
Sbjct: 901  LLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREG 960

Query: 235  FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             R  PD+ +YT L+   C+ G           R+ +A H F  +   G   D +AYN +I
Sbjct: 961  IR--PDLKSYTSLVGCLCEAG-----------RVDDALHYFEKLKQTGLYLDSIAYNLMI 1007

Query: 295  DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            DG  +++RIE AL L+D+M  +G  P+  TYNS I    V   +++A ++  ++Q +   
Sbjct: 1008 DGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLE 1067

Query: 355  VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             P   +Y  +I     +G    A      ++ GG  P   T+
Sbjct: 1068 -PNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTF 1108



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 123/283 (43%), Gaps = 29/283 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           +F  +M   G    V T   T L+  L + G ++EA      M++    P+++ YN +I+
Sbjct: 355 EFWSEMEADGYAPDVIT--FTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLIS 412

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-----MQTGCRKAIRR- 266
            L RV   + A  L   ME  G    P  YTY + I  Y K G     ++T  +  IR  
Sbjct: 413 GLLRVNRLDDALDLFNNMETLGV--VPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGI 470

Query: 267 ------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
                             R+ EA  +F  +   G  PD V YN ++    K  +++ A+E
Sbjct: 471 APNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIE 530

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           L  DM++  C P+ +  NS I        +D+A +M  +++++    PT  +Y  +I  L
Sbjct: 531 LLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLA-PTVVTYNTLIAGL 589

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
            + G+V  A +  A +   G  P   T+  + D L   +E  L
Sbjct: 590 GKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDL 632



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 14/199 (7%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L E G + EA   F R+K     PD   YN+++    + G  ++A  LL  M     +C 
Sbjct: 484 LAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSEN--QCE 541

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD+     LI++  K G           R+ EA  +F  +      P VV YN LI G  
Sbjct: 542 PDIIVINSLINTLYKAG-----------RVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLG 590

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K  +++RA+ELF  M   GC PN +T+N+ +      +E+D A++M+ KM  +N  +P  
Sbjct: 591 KEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNC-MPDV 649

Query: 359 SSYTPIIHALCEAGRVLEA 377
            ++  IIH L    RV +A
Sbjct: 650 LTFNTIIHGLVIEKRVSDA 668



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 1/154 (0%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A +LF  M   G  PDV  YN L+D   K+ +I    EL++ M    C PN +T+N  I 
Sbjct: 809 AWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIA 868

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                N +DKA+++   + + +   PT  +Y P++  L ++GR+ EA++   E+VD G  
Sbjct: 869 NLVKSNSLDKALDLFYDLVSGDFS-PTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCR 927

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           P    Y ++ +      + +   +  ++ +R+GI
Sbjct: 928 PNNAIYNILINGFGKTGDVNTACELFKRMVREGI 961



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 13/191 (6%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           + NG    + +   ++K   + G V+EA+     M + +C PD+   N +IN L + G  
Sbjct: 501 KSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRV 560

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           ++A  +     L   +  P V TY  LI+   K G           ++  A  LF  M  
Sbjct: 561 DEAWKMF--CRLKDMKLAPTVVTYNTLIAGLGKEG-----------QVQRAMELFASMTG 607

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  P+ + +N ++D  CK   ++ AL++   M    C+P+ +T+N+ I    +   +  
Sbjct: 608 NGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSD 667

Query: 341 AIEMMRKMQNL 351
           AI +  +M+ +
Sbjct: 668 AIWLFHQMKKM 678



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 14/234 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           TT +   ++++L     V + +  F  M+    + D+  Y ++   L   G   +  F  
Sbjct: 123 TTETCNHMLEILRIHRRVGDMVVVFNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAF 182

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            +M   GF    + Y+Y  LI    + G+   CR+A+         ++R M+ +G  P +
Sbjct: 183 GKMREAGFHL--NAYSYNGLIHLLLQSGL---CREAL--------EMYRRMVLEGLKPSL 229

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             ++ L+    K    E    L ++M   G  PN  TY   IR       ID+A  +M++
Sbjct: 230 KTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKR 289

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           M++   G P   +YT +I ALC AG++ +A +   ++      P   TY  + D
Sbjct: 290 MEDDGCG-PDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLD 342



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 15/184 (8%)

Query: 142  FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
            F +  +V    +  K M R G        S T L+  L E G V++AL  F ++KQ    
Sbjct: 940  FGKTGDVNTACELFKRMVREGIRP--DLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLY 997

Query: 202  PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
             D  AYN++I+ L R     +A  L ++M+  G    PD++TY  LI +    GM     
Sbjct: 998  LDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGIN--PDLFTYNSLILNLGVAGM----- 1050

Query: 262  KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                  + +A  L+  + F G  P+V  YN LI G   +   + A  ++  M   GC PN
Sbjct: 1051 ------VEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPN 1104

Query: 322  RVTY 325
              T+
Sbjct: 1105 TGTF 1108



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 101/267 (37%), Gaps = 30/267 (11%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           S  GNG    T +   ++  L +   V+ AL   Y+M    C PDV  +N +I+ L    
Sbjct: 604 SMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEK 663

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA-----------IRRR 267
             + A +L  QM+       PD  T   L+    K G+     K            + RR
Sbjct: 664 RVSDAIWLFHQMKK---MLTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRR 720

Query: 268 IW-------------EANHLFRLMLFKGFV-PDVVAYNCLIDGCCKTYRIERALELFDDM 313
            W             E   LF   L  G V  D      +I   CK  +   A  +F   
Sbjct: 721 FWEDLMGGILTQAGTEKTILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRF 780

Query: 314 NKK-GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
            K+ G  P   +YN  I  +  V+  + A  +  +M+N     P   +Y  ++ A  ++G
Sbjct: 781 TKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCA-PDVFTYNLLLDAHGKSG 839

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLV 399
           ++ E  +   +++     P   T+ ++
Sbjct: 840 KINELFELYEQMICSSCKPNTITHNII 866


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 111/211 (52%), Gaps = 16/211 (7%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M + R  P+VY YN++I   C VG   K      +ME  G  C P+V TY  LI +YCK 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNG--CLPNVVTYNTLIDAYCKM 58

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           RI EA  L + M  KG  P++++YN +I+G C+   ++ A E+ ++M 
Sbjct: 59  G-----------RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMG 107

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGR 373
            KG  P+ VTYN+ +  Y       +A+ +  +M  + +GV P+  +YT +I+++C+A  
Sbjct: 108 YKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM--VRNGVSPSVVTYTALINSMCKARN 165

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           +  A +F  ++   G  P E TY  + D  +
Sbjct: 166 LNRAMEFFDQMRIRGLRPNERTYTTLIDGFS 196



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 118/255 (46%), Gaps = 17/255 (6%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           KGL  F  +M R  NG L    +   LI    + G ++EA      M     +P++ +YN
Sbjct: 28  KGLGCF-GEMER--NGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYN 84

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
           V+IN LCR G+  +A  +LE+M   GF   PD  TY  L++ YCK G             
Sbjct: 85  VIINGLCREGSMKEAWEILEEMGYKGF--TPDEVTYNTLLNGYCKEG-----------NF 131

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +A  +   M+  G  P VV Y  LI+  CK   + RA+E FD M  +G  PN  TY + 
Sbjct: 132 HQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTL 191

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           I  +S    +++A  ++ +M       P+  +Y   IH  C   R+ EA   + E+V+ G
Sbjct: 192 IDGFSRQGLLNEAYRILNEMTESGFS-PSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 250

Query: 389 SVPREYTYKLVCDAL 403
             P   +Y  +    
Sbjct: 251 LAPDVVSYSTIISGF 265



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 143/288 (49%), Gaps = 35/288 (12%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCR 201
           R  ++K  W+ L++M  +G     T   VT   L+    +EG  ++AL     M +    
Sbjct: 92  REGSMKEAWEILEEMGYKG----FTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVS 147

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM----- 256
           P V  Y  +IN++C+  N N+A    +QM + G R  P+  TYT LI  + + G+     
Sbjct: 148 PSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLR--PNERTYTTLIDGFSRQGLLNEAY 205

Query: 257 -------QTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                  ++G   ++              R+ EA  + + M+ KG  PDVV+Y+ +I G 
Sbjct: 206 RILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGF 265

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C+   ++RA ++  +M +KG  P+ VTY+S I+    +  + +A ++ ++M  L+ G+P 
Sbjct: 266 CRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM--LDMGLPP 323

Query: 358 SS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
              +YT +I+A C  G + +A     E++  G +P   TY ++ + LN
Sbjct: 324 DEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLN 371



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 14/222 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+     G + + L  F  M++  C P+V  YN +I+A C++G  ++A  LL+ M   G
Sbjct: 16  LIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKG 75

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P++ +Y ++I+  C+ G          +  WE   +   M +KGF PD V YN L+
Sbjct: 76  MQ--PNLISYNVIINGLCREGSM--------KEAWE---ILEEMGYKGFTPDEVTYNTLL 122

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G CK     +AL +  +M + G  P+ VTY + I        +++A+E   +M+ +   
Sbjct: 123 NGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMR-IRGL 181

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            P   +YT +I      G + EA   L E+ + G  P   TY
Sbjct: 182 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 223



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 141/347 (40%), Gaps = 77/347 (22%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           LN+A EF+  + R      NE T   +   F+R   +   +  L +M+  G    V T +
Sbjct: 166 LNRAMEFFDQM-RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYN 224

Query: 172 V----TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
                 C+++ +       EAL     M +    PDV +Y+ +I+  CR G  ++A  + 
Sbjct: 225 AFIHGHCVLERM------EEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMK 278

Query: 228 EQM---------------------------------ELPGFRCPPDVYTYTILISSYCKY 254
           ++M                                 E+     PPD +TYT LI++YC  
Sbjct: 279 QEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVE 338

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G            + +A HL   M+ KGF+PD V Y+ LI+G  K  R   A  L   + 
Sbjct: 339 G-----------DLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLI 387

Query: 315 KKGCIPNRVTYNSF------IRYYSVV------------NEIDKAIEMMRKMQNLNHGVP 356
            +  +P+ VTY++       I + SVV            +E D+  E M +    NH  P
Sbjct: 388 YEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVER---NH-KP 443

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             + Y  IIH  C  G + +A +   E++  G VP   T   +  AL
Sbjct: 444 GEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKAL 490


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 128/250 (51%), Gaps = 18/250 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI  L  E  ++EA+  F +MK   C P V  Y V+I ALC     ++A  L+++ME 
Sbjct: 292 THLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEE 351

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  P+++TYT+LI S C            + ++ +A  L   ML KG +P+V+ YN 
Sbjct: 352 KGIK--PNIHTYTVLIDSLCS-----------QCKLEKARELLGQMLEKGLMPNVITYNA 398

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI+G CK   IE AL++ + M  +   PN  TYN  I+ Y   N + KA+ ++ KM    
Sbjct: 399 LINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLE-R 456

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA---EEP 409
             +P   +Y  +I   C +G    A   L+ + D G VP  +TY  + D+L  +   EE 
Sbjct: 457 KVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEA 516

Query: 410 SLLDDGLRKR 419
             L D L ++
Sbjct: 517 CDLFDSLEQK 526



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 140/309 (45%), Gaps = 37/309 (11%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK L      +EAL     M++   +P+++ Y V+I++LC      KAR LL
Sbjct: 322 TVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELL 381

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI----------------------- 264
            QM   G    P+V TY  LI+ YCK GM       +                       
Sbjct: 382 GQMLEKGLM--PNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYC 439

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           +R + +A  +   ML +  +PDVV YN LIDG C++   + A  L   MN +G +P+  T
Sbjct: 440 KRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWT 499

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y S I        +++A ++   ++     +P    YT +I   C+AG+V EA   L ++
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQ-KDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKM 558

Query: 385 VDGGSVPREYTYKLVCDAL---NAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHK 441
           +    +P   T+  +   L      +E +LL++ +       ++   +  +    I+ H+
Sbjct: 559 LSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKM-------VKIDLQPTVSTDTILIHR 611

Query: 442 ELLKCGEID 450
            LLK G+ D
Sbjct: 612 -LLKDGDFD 619



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 107/212 (50%), Gaps = 14/212 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A+    +M + +  PDV  YN +I+  CR GNF+ A  LL  M   G    PD +TY
Sbjct: 443 VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGL--VPDPWTY 500

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T +I S CK            +R+ EA  LF  +  K  +P+VV Y  LIDG CK  ++ 
Sbjct: 501 TSMIDSLCK-----------SKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVN 549

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  + + M  K C+PN +T+N+ I       ++ +A  +  KM  ++   PT S+ T +
Sbjct: 550 EAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQ-PTVSTDTIL 608

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           IH L + G    A     +++  G+ P  +TY
Sbjct: 609 IHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTY 640



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 131/270 (48%), Gaps = 22/270 (8%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTC---LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           + D  + M++  + EL     + C   L+  L   GLV+E    +  M + +  P++Y Y
Sbjct: 162 VLDLCRKMNKDESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTY 221

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           N ++N  C+VGN  +A   +  +   G    PD +TYT LI  YC+           R+ 
Sbjct: 222 NKMVNGYCKVGNVEEANQYVSMIVEAGL--DPDFFTYTSLIMGYCQ-----------RKD 268

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           +  A  +F+ M  KG   + VAY  LI G C   RI+ A++LF  M    C P   TY  
Sbjct: 269 LDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTV 328

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            I+         +A+ ++++M+    G+ P   +YT +I +LC   ++ +AR+ L ++++
Sbjct: 329 LIKALCGSERKSEALNLVKEME--EKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLE 386

Query: 387 GGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            G +P   TY  +   +N   +  +++D L
Sbjct: 387 KGLMPNVITYNAL---INGYCKRGMIEDAL 413



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 34/219 (15%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  +G + EA     +M +   +P V    ++I+ L + G+F+ A    +QM   G
Sbjct: 573 LIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSG 632

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PD +TYT  I +YC+ G           R+ +A  +   M   G  PD+  Y+ LI
Sbjct: 633 TK--PDAHTYTTFIQTYCREG-----------RLQDAEDMVAKMKENGVSPDLFTYSSLI 679

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY------------------SVVN 336
            G     R   A  +   M+  GC P++ T+ S I++                   S + 
Sbjct: 680 KGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMM 739

Query: 337 EIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRV 374
           E D  +E++ KM  + HGV P + SY  ++  +CE G +
Sbjct: 740 EFDIVVELLEKM--VEHGVTPNAKSYEKLMLGICEIGNL 776



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 14/198 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    + G VNEA     +M    C P+   +N +I+ LC  G   +A  L E+M  
Sbjct: 536 TALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVK 595

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +  P V T TILI    K G       A RR        F+ ML  G  PD   Y  
Sbjct: 596 IDLQ--PTVSTDTILIHRLLKDG---DFDHAYRR--------FQQMLSSGTKPDAHTYTT 642

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
            I   C+  R++ A ++   M + G  P+  TY+S I+ Y  +   + A  ++++M +  
Sbjct: 643 FIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTG 702

Query: 353 HGVPTSSSYTPIIHALCE 370
              P+  ++  +I  L E
Sbjct: 703 -CEPSQHTFLSLIKHLLE 719



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 108/279 (38%), Gaps = 46/279 (16%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T S+ T LI  L ++G  + A   F +M     +PD + Y   I   CR G    A  ++
Sbjct: 601 TVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMV 660

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAIRRRIWEANHLF 275
            +M+  G    PD++TY+ LI  Y   G              TGC  +    +    HL 
Sbjct: 661 AKMKENGVS--PDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLL 718

Query: 276 RL------------------------------MLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            +                              M+  G  P+  +Y  L+ G C+   +  
Sbjct: 719 EMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRV 778

Query: 306 ALELFDDMNKK-GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           A ++FD M +K G  P+ + +N+ +     + + ++A +++  M  + H +P   S   +
Sbjct: 779 AEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGH-LPQLESCKIL 837

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           I  L + G           L+  G    E  +K++ D +
Sbjct: 838 ICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGV 876



 Score = 45.1 bits (105), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 77/200 (38%), Gaps = 36/200 (18%)

Query: 141 VFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
            + R   ++   D +  M   G + +L T SS   LIK  G+ G  N A     RM    
Sbjct: 646 TYCREGRLQDAEDMVAKMKENGVSPDLFTYSS---LIKGYGDLGRTNSAFVVLKRMHDTG 702

Query: 200 CRPDVYAYNVVINAL---------------CRVGN---FNKARFLLEQMELPGFRCPPDV 241
           C P  + +  +I  L               C + N   F+    LLE+M   G    P+ 
Sbjct: 703 CEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGV--TPNA 760

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPDVVAYNCLIDGCCKT 300
            +Y  L+   C+ G            +  A  +F  M  K G  P  + +N L+  CCK 
Sbjct: 761 KSYEKLMLGICEIG-----------NLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKL 809

Query: 301 YRIERALELFDDMNKKGCIP 320
            +   A ++ DDM   G +P
Sbjct: 810 EKHNEAAKVVDDMICVGHLP 829



 Score = 45.1 bits (105), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 28/181 (15%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           C++  + E  +V E L    +M +    P+  +Y  ++  +C +GN   A  + + M+  
Sbjct: 733 CVMSNMMEFDIVVELLE---KMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQK 789

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW------------------------ 269
               P ++  +  L+S  CK        K +   I                         
Sbjct: 790 EGISPSEL-VFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKE 848

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
               +F+ +L  G+  D +A+  +IDG  K   +E   ELF+ M K GC  +  TY+  I
Sbjct: 849 RGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLI 908

Query: 330 R 330
            
Sbjct: 909 E 909


>gi|147792816|emb|CAN68810.1| hypothetical protein VITISV_001082 [Vitis vinifera]
          Length = 577

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 135/275 (49%), Gaps = 18/275 (6%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
           F+ W      + H+     +   +F    N + + D ++  + R  G +V+  +   ++ 
Sbjct: 76  FFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIE--AYRVEGTVVSVKTFNVVLH 133

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
           +L E  L +EAL    +M +F  R D  AYN VI   C  G+ + A  L+++M L     
Sbjct: 134 LLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLIDLY- 192

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            P++ TY  +I  +C  G           R+ +A  LF++M   G  P+VV Y  ++DG 
Sbjct: 193 -PNMITYVTMIKGFCNVG-----------RLEDACKLFKVMKGHGCSPNVVVYTVILDGV 240

Query: 298 CKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           C+   +ERALEL  +M K+   C PN VTY S I+      ++ +A+E++ +M+      
Sbjct: 241 CRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCA- 299

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
           P   + + ++   C  GRV EA   + ++V GG+V
Sbjct: 300 PNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNV 334


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 155/362 (42%), Gaps = 56/362 (15%)

Query: 42  PFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAA 101
           P  +      LK  P+   +  +  G + GFRH           E+Y +  ++L  G   
Sbjct: 94  PIWVSKALVKLKGDPKSALKFFKEAGARAGFRHAA---------ESYCVLAHILFCG-MF 143

Query: 102 YRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRR 161
           Y D + V            W+               +G  F   +    LW   +++ R 
Sbjct: 144 YLDARSV---------IKEWIL--------------LGREFPGCDFFDMLWS-TRNVCRP 179

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G   T      L  VL + G++ EA   F++M +FR  P V + N +++ L +     
Sbjct: 180 GFGVFDT------LFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGG 233

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
            A    + M + G    P V+TY ++I    + G            +  A  LF  M  K
Sbjct: 234 LALSFFKDMVVAGLS--PSVFTYNMVIGCLAREG-----------DLEAARSLFEEMKAK 280

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G  PD+V YN LIDG  K   +  A+ +F++M   GC P+ +TYNS I  +     I +A
Sbjct: 281 GLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQA 340

Query: 342 IEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
            E +  M+    G+ P   +Y+ +I A C+AG +LEA  F  +++  G  P E+TY  + 
Sbjct: 341 FEYLHGMK--QRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLI 398

Query: 401 DA 402
           DA
Sbjct: 399 DA 400



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 131/291 (45%), Gaps = 20/291 (6%)

Query: 108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV 167
           V LG+ +      W    F       +C E+    ++ +       F KDM   G    V
Sbjct: 192 VDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSV 251

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
            T ++  +I  L  EG +  A + F  MK    RPD+  YN +I+   +VG    A  + 
Sbjct: 252 FTYNM--VIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVF 309

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           E+M+  G  C PDV TY  LI+ +CK+            RI +A      M  +G  P+V
Sbjct: 310 EEMKDAG--CEPDVITYNSLINCFCKF-----------ERIPQAFEYLHGMKQRGLQPNV 356

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y+ LID  CK   +  A + F DM + G  PN  TY S I     + ++++A ++  +
Sbjct: 357 VTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESE 416

Query: 348 MQ--NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           MQ   +N  + T   YT ++  LCE GR+ EA +    L+  G    +  Y
Sbjct: 417 MQQAGVNLNIVT---YTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIY 464



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 130/263 (49%), Gaps = 18/263 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   +   +++L  M +RG    V T S   LI    + G++ EA   F  M +   +
Sbjct: 331 FCKFERIPQAFEYLHGMKQRGLQPNVVTYST--LIDAFCKAGMLLEANKFFVDMIRVGLQ 388

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+ + Y  +I+A C++G+ N+A  L  +M+  G     ++ TYT L+   C+ G      
Sbjct: 389 PNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNL--NIVTYTALLDGLCEDG------ 440

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ EA  LF  +L  G+  +   Y  L  G  K   +E+A+++ ++MNKK   P+
Sbjct: 441 -----RMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPD 495

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDF 380
            + Y + I      NEI+ ++ ++R+M  ++ G+  +S  YT +I A  + G+  EA + 
Sbjct: 496 LLLYGTKIWGLCRQNEIEDSMAVIREM--MDCGLTANSYIYTTLIDAYFKVGKTTEAVNL 553

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L E+ D G      TY ++ D L
Sbjct: 554 LQEMQDLGIKITVVTYGVLIDGL 576



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 14/209 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + +++A    M       + Y Y  +I+A  +VG   +A  LL++M+  G +    V TY
Sbjct: 512 IEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKIT--VVTY 569

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            +LI   CK G+           + +A   F  M   G  P+++ Y  LIDG CK   +E
Sbjct: 570 GVLIDGLCKIGL-----------VQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLE 618

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  LF++M  KG  P+++ Y S I          +A+ +  +M  +   +    +YT +
Sbjct: 619 EAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDL-CAYTSL 677

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPRE 393
           I      G+V  A+  L E++  G +P +
Sbjct: 678 IWGFSRYGQVQLAKSLLDEMLRKGIIPDQ 706



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 22/226 (9%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L++M   G    V T  V  LI  L + GLV +A+  F  M +   +P++  Y  +I+
Sbjct: 552 NLLQEMQDLGIKITVVTYGV--LIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALID 609

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+     +A+ L  +M   G    PD   YT LI    K+G   G   ++R R+ E  
Sbjct: 610 GLCKNDCLEEAKNLFNEMLDKGIS--PDKLVYTSLIDGNMKHG-NPGEALSLRNRMVEI- 665

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
                    G   D+ AY  LI G  +  +++ A  L D+M +KG IP++V     +R Y
Sbjct: 666 ---------GMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKY 716

Query: 333 SVVNEIDKAIEMMRKMQ-------NLNHGVPTSSSYTPIIHALCEA 371
             + +I++A+ +   M         ++  VP+  +    +H LC +
Sbjct: 717 YELGDINEALALHDDMARRGLISGTIDITVPSCLTAVTKLHKLCAS 762


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 135/286 (47%), Gaps = 17/286 (5%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           ++  F++W      F  +     EM  +  +  +    W  +  M  RG    +T S+ +
Sbjct: 125 QSLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRG--VRITVSTFS 182

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            L++     GL  EA+  F RM+ + C+PD  ++++VI++LC+    ++A    + ++  
Sbjct: 183 VLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLK-- 240

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
             +  PDV  YT L+  +C+ G            I +A  +F  M   G  P+V  Y+ +
Sbjct: 241 -HKFEPDVIVYTSLVHGWCRAG-----------DIAKAEEVFSDMKEAGVKPNVYTYSIV 288

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ID  C+  +I RA ++F +M   GC PN VT+NS +R +      +K +++  +M+ L  
Sbjct: 289 IDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGC 348

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
              T  SY  +I + C+   + EA   L  +V  G  P   T+  +
Sbjct: 349 AADT-ISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSI 393



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 50/197 (25%)

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN +I+   ++ +F+ A  L++ M+  G R    V T+++L+  Y + G+          
Sbjct: 146 YNEMIDLAGKLRHFDLAWHLIDLMKSRGVRI--TVSTFSVLVRRYVRAGLAA-------- 195

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
              EA H F  M   G  PD V+++ +I   CK  R   A ELF D  K    P+ + Y 
Sbjct: 196 ---EAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEA-ELFFDSLKHKFEPDVIVY- 250

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
                                              T ++H  C AG + +A +  +++ +
Sbjct: 251 -----------------------------------TSLVHGWCRAGDIAKAEEVFSDMKE 275

Query: 387 GGSVPREYTYKLVCDAL 403
            G  P  YTY +V D+L
Sbjct: 276 AGVKPNVYTYSIVIDSL 292



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 105/278 (37%), Gaps = 58/278 (20%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-- 230
           T L+      G + +A   F  MK+   +P+VY Y++VI++LCR G   +A  +  +M  
Sbjct: 251 TSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMID 310

Query: 231 -------------------------------ELPGFRCPPDVYTYTILISSYCKYG---- 255
                                          ++    C  D  +Y  LI S+CK      
Sbjct: 311 AGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDE 370

Query: 256 ----MQTGCRKAIRRRIWEANHLF----RLMLFKGF------------VPDVVAYNCLID 295
               + T  +K +       N +F     L    G             +P+ + YN L+ 
Sbjct: 371 AVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMR 430

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
               +  I+  L+L  +M++    PN  TY   I  +      + A  +M++M       
Sbjct: 431 MFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLK 490

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV-PR 392
           P  S Y  ++  L  AG++ +  + + ++V  G V PR
Sbjct: 491 PNLSIYETVLELLRNAGQLKKHEELVEKMVARGFVSPR 528



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 35/179 (19%), Positives = 73/179 (40%), Gaps = 14/179 (7%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  N+      L  M ++G       S+   +   + E   VN A   + +MK+ +C P+
Sbjct: 364 KDENLDEAVKVLDTMVKKGVAP--NASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPN 421

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              YN+++       + +    L ++M+       P+V TY ILI  +C+ G        
Sbjct: 422 TLTYNILMRMFADSKSIDMVLKLKKEMD--ESEVEPNVNTYRILILMFCEKGHWNNAYNL 479

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
           ++  + E          K   P++  Y  +++      ++++  EL + M  +G +  R
Sbjct: 480 MKEMVEE----------KCLKPNLSIYETVLELLRNAGQLKKHEELVEKMVARGFVSPR 528


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 117/249 (46%), Gaps = 27/249 (10%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  V T++   LI     E  ++EA+    +MK F C PD  +YN +++ LC+ G  N+A
Sbjct: 207 GVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEA 266

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------RIWEANHL- 274
           R LL  M+  G    P+  T+ IL+S YCK G      + I           +W  N L 
Sbjct: 267 RDLLLDMKNNGLL--PNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLI 324

Query: 275 ------------FRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                       FRL   M     +PDVV YN LI+GC       +  EL D M  KG  
Sbjct: 325 GGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVK 384

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN VTYN  +++Y    ++D A   +RKM+      P   ++  +I+  C+AGR+ EA  
Sbjct: 385 PNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFS-PDCVTFNTLINGYCKAGRLSEAFR 443

Query: 380 FLAELVDGG 388
            + E+   G
Sbjct: 444 MMDEMSRKG 452



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 145/347 (41%), Gaps = 64/347 (18%)

Query: 113 NKATEFYHWVERFFDF--FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           NK +E    + +  DF  F + ++   +  V  +   +    D L DM  + NG L   +
Sbjct: 226 NKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDM--KNNGLLPNRN 283

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +   L+    + G + EA      M Q    PDV+ YN++I  LC+ G  ++A  L ++M
Sbjct: 284 TFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEM 343

Query: 231 ELPGFRCPPDVYTYTILISSY--CKYGMQ----------TGCR-KAIRRRI---W----- 269
           E    +  PDV TY  LI+    C   ++           G +  A+   +   W     
Sbjct: 344 E--NLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEG 401

Query: 270 ---EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
               A +  R M   GF PD V +N LI+G CK  R+  A  + D+M++KG   N VT N
Sbjct: 402 KMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLN 461

Query: 327 SFIRYYSVVNEID--------------------------------KAIEMMRKMQNLNHG 354
           + +       ++D                                K++E M+    +   
Sbjct: 462 TILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEK 521

Query: 355 --VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             +P+  +Y  +I  LC +G+  ++ D L EL++ G VP E TY  +
Sbjct: 522 EIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTI 568



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 119/287 (41%), Gaps = 44/287 (15%)

Query: 142 FARGNNVKG--LWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
           F  G +V+   LWD +K+       E++ +  +   +I  L   G  ++++     + + 
Sbjct: 503 FKDGKSVEAMKLWDEMKEK------EIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLES 556

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
              PD   YN +I   CR G   KA     +M    F+  PD++T  IL+   C  GM  
Sbjct: 557 GLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFK--PDLFTCNILLRGLCTEGM-- 612

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
              KA++        LF   + KG   D V YN +I G CK  R E A +L  +M +K  
Sbjct: 613 -LDKALK--------LFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKL 663

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMR------KMQNLNHGV----------------P 356
            P+  TYN+ +   +    + +A E M       K+Q+    +                P
Sbjct: 664 GPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTISLNKRKIESSSETSQESDP 723

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            S +++  I+ LC  G+  +A   + E    G    + TY  + + L
Sbjct: 724 NSVTFSEQINELCTQGKYKDAMHMVQESTQKGITLHKSTYISLMEGL 770



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 123/312 (39%), Gaps = 80/312 (25%)

Query: 164 GELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+ V  ++VT   ++K   +EG ++ A     +M++    PD   +N +IN  C+ G  +
Sbjct: 380 GKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLS 439

Query: 222 KARFLLEQME-----------------LPGFRCPPDVY----------------TYTILI 248
           +A  ++++M                  L G R   D Y                +Y  LI
Sbjct: 440 EAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLI 499

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
             Y K G              EA  L+  M  K  +P ++ YN +I G C + + +++++
Sbjct: 500 MGYFKDGKSV-----------EAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSID 548

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN------------LNHGVP 356
             +++ + G +P+  TYN+ I  Y    +++KA +   KM              L  G+ 
Sbjct: 549 KLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLC 608

Query: 357 TSS----------------------SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
           T                        +Y  II  LC+  R  EA D LAE+ +    P  Y
Sbjct: 609 TEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCY 668

Query: 395 TYKLVCDALNAA 406
           TY  +  AL  A
Sbjct: 669 TYNAILSALADA 680



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 31/221 (14%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           + A   F RMK+   +P++   N +INAL R                  +   P VY   
Sbjct: 156 HHAAQIFNRMKRLHLKPNLLTCNTLINALVR------------------YPSKPSVYLSK 197

Query: 246 ILISSYCKYGMQT----------GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
            + S   K G++           GC   I  ++ EA  L   M      PD V+YN ++D
Sbjct: 198 AIFSDVIKLGVKVNTNTFNILIYGC--CIENKLSEAIGLIGKMKDFSCFPDNVSYNTILD 255

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
             CK  ++  A +L  DM   G +PNR T+N  +  Y  +  + +A +++  M   N+ +
Sbjct: 256 VLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQ-NNVL 314

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           P   +Y  +I  LC+ G++ EA     E+ +   +P   TY
Sbjct: 315 PDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTY 355


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 138/307 (44%), Gaps = 31/307 (10%)

Query: 118 FYHWVERFF--DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT-- 173
           F+ WV R    +  HN  TC  +     +       +   +D      G+   T+ +T  
Sbjct: 53  FFRWVTRSHRGESIHNNFTCNCLLRTLVKARRHHQAYQIFRDELL---GQHCDTNHITYN 109

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMEL 232
            LI    + G +  A      MK+    PDV  ++ ++ ALC  GN ++A ++  E +E 
Sbjct: 110 TLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVE- 168

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
               C PD   + IL+   CK             ++ EA  +   M  +G VPDVV YN 
Sbjct: 169 ----CAPDSVLFNILVHGLCK-----------ANQLSEARQMIEEMSERGIVPDVVTYNS 213

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-QNL 351
           LIDG CK+YR+E A +L + M K+   PN VTYN+ I  Y        A +++ +M Q+ 
Sbjct: 214 LIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSG 273

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAE 407
            H  P   ++  +I   C+  ++ +A + L  +  G   P   TY +    +CDA  A E
Sbjct: 274 TH--PDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANE 331

Query: 408 EPSLLDD 414
              LL +
Sbjct: 332 ACELLSE 338



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 14/217 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    ++  +++A    + MK+  C P++  YNV+I+ LC  G  N+A  LL +M+  G
Sbjct: 284 LISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRG 343

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD+ TY  LI  +C+             +I +A  +  LM+ +G +PD ++Y  L 
Sbjct: 344 IL--PDIITYNSLIGIFCR-----------NFQIEQAFQIQNLMVERGVIPDGISYCTLA 390

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
               K+ R + A  L D+M   G IPN  T+NS +        +D+A  ++  M+ +   
Sbjct: 391 VALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCD 450

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
            P +S+Y  ++  LC+AGRV +A++ L  +V  G  P
Sbjct: 451 -PAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQP 486



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 136/291 (46%), Gaps = 27/291 (9%)

Query: 122 VERFFDFFHNEMTCKEMGIVF-------ARGNNVKGLWDFLKDMSRRG-NGELVTTSSVT 173
           + R   +F   + C    ++F        + N +      +++MS RG   ++VT +S  
Sbjct: 156 LSRAMQYFRESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNS-- 213

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            LI  L +   + EA      M + + RP++  YN +I   C+ G    A  L+E+M   
Sbjct: 214 -LIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQS 272

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    PDV T+  LIS +C+           + +I +A  +  LM      P++V YN L
Sbjct: 273 GTH--PDVVTFNSLISGFCQ-----------KSKIDKACEVLHLMKKGLCAPNLVTYNVL 319

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I G C   R   A EL  +M+ +G +P+ +TYNS I  +    +I++A ++   M  +  
Sbjct: 320 ISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLM--VER 377

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           GV P   SY  +  AL ++ R  EA   L  + D G++P  +T+  + + L
Sbjct: 378 GVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGL 428



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 136/292 (46%), Gaps = 35/292 (11%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNG-ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F +  +++  +  L +M  RG+  ++VT SS+   ++ L   G ++ A+  F   +   C
Sbjct: 115 FCKAGDMERAFQLLAEMKERGHSPDVVTHSSI---VQALCNTGNLSRAMQYFR--ESVEC 169

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-YGMQ-- 257
            PD   +N++++ LC+    ++AR ++E+M   G    PDV TY  LI   CK Y M+  
Sbjct: 170 APDSVLFNILVHGLCKANQLSEARQMIEEMSERGI--VPDVVTYNSLIDGLCKSYRMEEA 227

Query: 258 -----TGCRKAIRRRIWE----------------ANHLFRLMLFKGFVPDVVAYNCLIDG 296
                T  ++ +R  +                  A+ L   M+  G  PDVV +N LI G
Sbjct: 228 RQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISG 287

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV- 355
            C+  +I++A E+   M K  C PN VTYN  I         ++A E++ +M     G+ 
Sbjct: 288 FCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMD--GRGIL 345

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           P   +Y  +I   C   ++ +A      +V+ G +P   +Y  +  AL  +E
Sbjct: 346 PDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSE 397



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 14/232 (6%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           RM Q    PDV  +N +I+  C+    +KA  +L  M+  G  C P++ TY +LIS  C 
Sbjct: 268 RMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMK-KGL-CAPNLVTYNVLISGLCD 325

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           R  EA  L   M  +G +PD++ YN LI   C+ ++IE+A ++ + M
Sbjct: 326 AG-----------RANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLM 374

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            ++G IP+ ++Y +           D+A  ++  M +    +P   ++  ++  LC + R
Sbjct: 375 VERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAG-AIPNLFTFNSLMEGLCCSRR 433

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           + EAR  LA +   G  P   TY+++   L  A       + L   + +GI+
Sbjct: 434 LDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQ 485


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 137/292 (46%), Gaps = 18/292 (6%)

Query: 114 KATEFYHWVERFFDFF--HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           + TE    ++R   +    NE+T   +     +  N     D  + M  R     V   S
Sbjct: 189 RVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYS 248

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           +  +I  L ++G +++AL+ F  M+    + DV AY+ +I  LC  G ++    +L +M 
Sbjct: 249 I--VIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREM- 305

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G    P+V T++ LI  + K G           ++ EA  L+  M+ +G  PD + Y+
Sbjct: 306 -IGRNIIPNVVTFSALIDVFVKEG-----------KLLEAKELYNEMVARGIAPDTITYS 353

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            LIDG CK  R+  A ++ D M  KGC PN VTY+  I  Y     +D  + +  ++ + 
Sbjct: 354 SLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSK 413

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              V  + +Y  ++   C++G++  A++   E+V  G  P   TY ++ D L
Sbjct: 414 GL-VADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGL 464



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 124/276 (44%), Gaps = 16/276 (5%)

Query: 150 GLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           G WD    M R   G  +  + VT   LI V  +EG + EA   +  M      PD   Y
Sbjct: 293 GRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITY 352

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           + +I+  C+     +A  +L+ M   G  C P++ TY+ILI+SYCK            +R
Sbjct: 353 SSLIDGFCKENRLGEANQMLDLMVSKG--CEPNIVTYSILINSYCK-----------AKR 399

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           +     LF  +  KG V D V YN L+ G C++ ++  A ELF +M  +G  P+ VTY  
Sbjct: 400 VDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGI 459

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            +       E+ KA+E+  KMQ  +  +     Y  IIH +C A +V +A      L   
Sbjct: 460 LLDGLCDNGELQKALEIFEKMQK-SRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVK 518

Query: 388 GSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           G  P   TY ++   L      S  D   RK   DG
Sbjct: 519 GVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDG 554



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 14/234 (5%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + LI     EG V+EA+A   RM + + RP+V   N +IN LC  G   +A  L++
Sbjct: 139 TITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLID 198

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M   G  C  +  TY  +++  CK G               A  LFR M  +     VV
Sbjct: 199 RMVKYG--CEANEITYGPVLNRMCKSG-----------NTALALDLFRKMEERSIKASVV 245

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y+ +ID  CK   ++ AL LF++M  KG   + V Y+S I         D   +M+R+M
Sbjct: 246 QYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREM 305

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              N  +P   +++ +I    + G++LEA++   E+V  G  P   TY  + D 
Sbjct: 306 IGRNI-IPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDG 358



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 15/211 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G +  T +   L++   + G +N A   F  M      P V  Y ++++ LC  G   KA
Sbjct: 414 GLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKA 473

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             + E+M+    R    +  Y I+I   C              ++ +A  LF  +  KG 
Sbjct: 474 LEIFEKMQKS--RMILGIGIYNIIIHGMCN-----------ASKVDDAWSLFCSLSVKGV 520

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PDV+ YN +I G CK   +  A  LF  M + GC P+  TYN  IR +   + +  ++E
Sbjct: 521 KPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVE 580

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           ++ +M+    G    +S   ++  +   GR+
Sbjct: 581 LIEEMK--MRGFAADASTIKMVVVMLSDGRL 609



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 24/187 (12%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPG----FRCPPDVYTYTILISSYCKYGMQT 258
           ++Y  N++IN  CR       R LL    + G    F   P+  T++ LI+ +C  G   
Sbjct: 103 NMYTMNIMINCFCR------KRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEG--- 153

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                   R+ EA  L   M+   + P+VV  N LI+G C   R+  AL L D M K GC
Sbjct: 154 --------RVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGC 205

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEA 377
             N +TY   +           A+++ RKM+     +  S   Y+ +I +LC+ G + +A
Sbjct: 206 EANEITYGPVLNRMCKSGNTALALDLFRKME--ERSIKASVVQYSIVIDSLCKDGNLDDA 263

Query: 378 RDFLAEL 384
                E+
Sbjct: 264 LSLFNEM 270



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 49/234 (20%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           VNEA+  F  M Q R  P +  ++ + +A+ R   ++      ++M+L G     ++YT 
Sbjct: 50  VNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIE--HNMYTM 107

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            I+I+ +C+           +R++  A  +    L  GF P+ + ++ LI+G        
Sbjct: 108 NIMINCFCR-----------KRKLLFAFSVVGRALKFGFEPNTITFSTLINGF------- 149

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
                        C+  RV+          V  +D+ +EM  +        P   +   +
Sbjct: 150 -------------CLEGRVS--------EAVALVDRMVEMKYR--------PNVVTVNTL 180

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRK 418
           I+ LC  GRV EA   +  +V  G    E TY  V + +  +   +L  D  RK
Sbjct: 181 INGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRK 234


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 137/295 (46%), Gaps = 22/295 (7%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           N +T   M     +   ++G      +M R G    V   S   L+    + G ++E+LA
Sbjct: 222 NLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVV--SYNTLLSGYCKVGCLHESLA 279

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            F  M Q    PDV  +  +I+A C+ GN  +A  L+ QM   G R   +  T+T LI  
Sbjct: 280 VFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRM--NEVTFTALIDG 337

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           +CK G       A+             M   G  P VV YN LI+G CK  R++ A EL 
Sbjct: 338 FCKKGFLDDALLAVEE-----------MRKCGIQPSVVCYNALINGYCKLGRMDLARELI 386

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALC 369
            +M  K   P+ VTY++ I  Y  V  +D A ++ +KM  L  GV P + +Y+ +I  LC
Sbjct: 387 REMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKM--LKKGVLPDAITYSSLIRGLC 444

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRI 420
           E  R+ +A +    ++  G  P E+TY  +    C   N  +  SL D+ +RK +
Sbjct: 445 EEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV 499



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 17/244 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL  M R G    V T ++  L++ L   G + EA+     M+   C P+   YN ++ A
Sbjct: 139 FLSSMLRHGVAPNVYTYNI--LVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAA 196

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            CR G  + A  ++  M   G    P++ T+  +++  CK G   G RK           
Sbjct: 197 FCRAGELDGAERVVSLMREEG-NAKPNLVTFNSMVNGLCKAGRMEGARK----------- 244

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +F  M+ +G  PDVV+YN L+ G CK   +  +L +F +M ++G +P+ VT+ S I    
Sbjct: 245 VFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATC 304

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               +++A+ ++ +M+    G+  +  ++T +I   C+ G + +A   + E+   G  P 
Sbjct: 305 KAGNLEQAVALVAQMR--ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPS 362

Query: 393 EYTY 396
              Y
Sbjct: 363 VVCY 366



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 109/229 (47%), Gaps = 27/229 (11%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G  +   + T LI    ++G +++AL     M++   +P V  YN +IN  C++G  
Sbjct: 320 RERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRM 379

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM--------QTGCRKAI-------- 264
           + AR L+ +ME    R  PDV TY+ +IS YCK G         Q   +K +        
Sbjct: 380 DLARELIREMEAK--RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYS 437

Query: 265 --------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                    +R+ +A  LF  ML  G  PD   Y  LIDG CK   +E+AL L D+M +K
Sbjct: 438 SLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRK 497

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           G +P+ VTY+  I   S      +A  ++ K+ +    VP +  Y  ++
Sbjct: 498 GVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYH-EDPVPDNIKYDALM 545



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 46/247 (18%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFL---------------------------LEQM---- 230
           P V AYN V+ AL      +  RFL                           LE+     
Sbjct: 116 PSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVV 175

Query: 231 -ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
            ++ G  C P+  TY  L++++C+ G   G  + +     E N            P++V 
Sbjct: 176 GDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNA----------KPNLVT 225

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           +N +++G CK  R+E A ++FD+M ++G  P+ V+YN+ +  Y  V  + +++ +  +M 
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMT 285

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
                VP   ++T +IHA C+AG + +A   +A++ + G    E T+  + D      + 
Sbjct: 286 QRGL-VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFC---KK 341

Query: 410 SLLDDGL 416
             LDD L
Sbjct: 342 GFLDDAL 348



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 44/222 (19%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + + LI+ L EE  +N+A   F  M Q   +PD + Y  +I+  C+ GN  KA
Sbjct: 428 GVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKA 487

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG--------------------------MQ 257
             L ++M   G    PDV TY++LI+   K                            + 
Sbjct: 488 LSLHDEMIRKGVL--PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 545

Query: 258 TGCRKA-------------IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             C KA             ++  + EA+ +++ ML + +  D   Y+ LI G C+   + 
Sbjct: 546 LCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVR 605

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYY---SVVNEIDKAIE 343
           +AL     M + G  PN  +  S +R      +V E D AI+
Sbjct: 606 KALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQ 647


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 14/228 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L  VL + G++ EA+  F +MK+FR  P   + N +++   ++G  +  +   + M   G
Sbjct: 198 LFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAG 257

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R  P V+TY I+I   CK G            +  A  LF  M F+G VPD V YN +I
Sbjct: 258 AR--PTVFTYNIMIDCMCKEG-----------DVEAARGLFEEMKFRGLVPDTVTYNSMI 304

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K  R++  +  F++M    C P+ +TYN+ I  +    ++   +E  R+M+  N  
Sbjct: 305 DGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKG-NGL 363

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            P   SY+ ++ A C+ G + +A  F  ++   G VP EYTY  + DA
Sbjct: 364 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 411



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 160/388 (41%), Gaps = 47/388 (12%)

Query: 39  TQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRH---------------------RTP 77
           T  P  +  V   LK  P+  F+  +    + GF+H                      + 
Sbjct: 105 TLAPIWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSV 164

Query: 78  LRQRILKKEAYNIAN------NVLVLGPAAYRDPQKVTLGLNKATEFYHWVERF--FDFF 129
           L++ +L K   ++ +      NV V G   +     V + L    E      +   F  F
Sbjct: 165 LKEMVLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVF 224

Query: 130 HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEAL 189
               +C  +   FA+      +  F KDM   G G   T  +   +I  + +EG V  A 
Sbjct: 225 PKTRSCNGLLHRFAKLGKTDDVKRFFKDMI--GAGARPTVFTYNIMIDCMCKEGDVEAAR 282

Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
             F  MK     PD   YN +I+   +VG  +      E+M+     C PDV TY  LI+
Sbjct: 283 GLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK--DMCCEPDVITYNALIN 340

Query: 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
            +CK+G           ++      +R M   G  P+VV+Y+ L+D  CK   +++A++ 
Sbjct: 341 CFCKFG-----------KLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKF 389

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHAL 368
           + DM + G +PN  TY S I     +  +  A  +  +M  L  GV  +  +YT +I  L
Sbjct: 390 YVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEM--LQVGVEWNVVTYTALIDGL 447

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTY 396
           C+A R+ EA +   ++   G +P   +Y
Sbjct: 448 CDAERMKEAEELFGKMDTAGVIPNLASY 475



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 137/310 (44%), Gaps = 45/310 (14%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFY 193
           CKE  +  ARG          ++M  RG   LV  T +   +I   G+ G +++ +  F 
Sbjct: 273 CKEGDVEAARG--------LFEEMKFRG---LVPDTVTYNSMIDGFGKVGRLDDTVCFFE 321

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            MK   C PDV  YN +IN  C+ G          +M+  G +  P+V +Y+ L+ ++CK
Sbjct: 322 EMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLK--PNVVSYSTLVDAFCK 379

Query: 254 YGMQTGCRK---AIRR------------------RIWEANHLFRL---MLFKGFVPDVVA 289
            GM     K    +RR                  +I   +  FRL   ML  G   +VV 
Sbjct: 380 EGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVT 439

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  LIDG C   R++ A ELF  M+  G IPN  +YN+ I  +     +D+A+E++ +++
Sbjct: 440 YTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELK 499

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----N 404
               G+ P    Y   I  LC   ++  A+  + E+ + G       Y  + DA     N
Sbjct: 500 --GRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGN 557

Query: 405 AAEEPSLLDD 414
             E   LLD+
Sbjct: 558 PTEGLHLLDE 567



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 51/264 (19%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           +F ++M  +GNG      S + L+    +EG++ +A+  +  M++    P+ Y Y  +I+
Sbjct: 353 EFYREM--KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 410

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           A C++GN + A  L  +M   G     +V TYT LI   C              R+ EA 
Sbjct: 411 ANCKIGNLSDAFRLGNEMLQVGVEW--NVVTYTALIDGLCD-----------AERMKEAE 457

Query: 273 HLFRLM--------------LFKGFV---------------------PDVVAYNCLIDGC 297
            LF  M              L  GFV                     PD++ Y   I G 
Sbjct: 458 ELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGL 517

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C   +IE A  + ++M + G   N + Y + +  Y       + + ++ +M+ L+  V T
Sbjct: 518 CSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEV-T 576

Query: 358 SSSYTPIIHALCEAGRVLEARDFL 381
             ++  +I  LC+   V +A D+ 
Sbjct: 577 VVTFCVLIDGLCKNKLVSKAVDYF 600



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 93/209 (44%), Gaps = 13/209 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +  A      MK+   + +   Y  +++A  + GN  +   LL++M+         V T+
Sbjct: 523 IEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVT--VVTF 580

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            +LI   CK        K + + +   ++  R+    G   +   +  +IDG CK  ++E
Sbjct: 581 CVLIDGLCK-------NKLVSKAV---DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVE 630

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  LF+ M +KG +P+R  Y S +        + +A+ +  KM  +   +    +YT +
Sbjct: 631 AATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDL-LAYTSL 689

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPRE 393
           +  L    ++ +AR FL E++  G  P E
Sbjct: 690 VWGLSHCNQLQKARSFLEEMIGEGIHPDE 718



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 12/176 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+    + G   E L     MK+      V  + V+I+ LC+    +KA     ++  
Sbjct: 546 TTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRIS- 604

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
             F    +   +T +I   CK             ++  A  LF  M+ KG VPD  AY  
Sbjct: 605 NDFGLQANAAIFTAMIDGLCK-----------DNQVEAATTLFEQMVQKGLVPDRTAYTS 653

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           L+DG  K   +  AL L D M + G   + + Y S +   S  N++ KA   + +M
Sbjct: 654 LMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 709



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 19/224 (8%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK- 196
           M   F  GN  +GL   L D  +  + E VT  +   LI  L +  LV++A+  F R+  
Sbjct: 549 MDAYFKSGNPTEGL--HLLDEMKELDIE-VTVVTFCVLIDGLCKNKLVSKAVDYFNRISN 605

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
            F  + +   +  +I+ LC+      A  L EQM   G    PD   YT L+    K G 
Sbjct: 606 DFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL--VPDRTAYTSLMDGNFKQG- 662

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                      + EA  L   M   G   D++AY  L+ G     ++++A    ++M  +
Sbjct: 663 ----------NVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGE 712

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
           G  P+ V   S ++ +  +  ID+A+E+   +  + H + TS +
Sbjct: 713 GIHPDEVLCISVLKKHYELGCIDEAVELQSYL--MKHQLLTSDN 754


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/214 (34%), Positives = 109/214 (50%), Gaps = 14/214 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + LI    + G+++ A + F RM +   R  +Y YN +IN  C+ G+ + A FL  +M
Sbjct: 395 TYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKM 454

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P   T+T LIS YCK             ++ +A  L+R M  K   P V  +
Sbjct: 455 INEGLE--PTATTFTTLISGYCK-----------DLQVEKAFKLYREMNEKEIAPSVYTF 501

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C T  +  A +LFD+M ++   P  VTYN  I  Y   + +DKA E++  M +
Sbjct: 502 TALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLH 561

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            N  VP + +Y P+I  LC  GRV  A+DF+ +L
Sbjct: 562 -NGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDL 594



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 129/269 (47%), Gaps = 19/269 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + T ++V+ L+  L ++G ++ A     ++ +F   P+++ YN +INALC+  + +KA
Sbjct: 318 GFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKA 377

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L + M       P +  TY+ILI S+CK GM           +  A   F  M+  G 
Sbjct: 378 ELLYKNMH--SMNLPLNDVTYSILIDSFCKRGM-----------LDVAESYFGRMIEDGI 424

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
              +  YN LI+G CK   +  A  L+  M  +G  P   T+ + I  Y    +++KA +
Sbjct: 425 RETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFK 484

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV---- 399
           + R+M N     P+  ++T +I+ LC    + EA     E+V+    P E TY ++    
Sbjct: 485 LYREM-NEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGY 543

Query: 400 CDALNAAEEPSLLDDGLRKR-IRDGIEYR 427
           C A N  +   LL+D L    + D   YR
Sbjct: 544 CKAHNMDKAFELLEDMLHNGLVPDTYTYR 572



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 110/244 (45%), Gaps = 19/244 (7%)

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           +G + EAL+    M Q     D+  + V+I+   +  +  +   LL++M   G R  PD 
Sbjct: 616 QGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLR--PDS 673

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
             YT +I +Y K G              ++     LM+ +   P+VV Y   ++G CK  
Sbjct: 674 VIYTSMIDAYSKEG-----------SFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVG 722

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
            I+RA  LF+ M      PN VTY  F+   +    + +A ++  +M  L   +  +++Y
Sbjct: 723 EIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEM--LKGLLANTATY 780

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLR 417
             +I   C+ GR++EA   L+E+ + G  P   TY  +    C + +      L D  LR
Sbjct: 781 NILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLR 840

Query: 418 KRIR 421
           K + 
Sbjct: 841 KGVE 844



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 116/253 (45%), Gaps = 23/253 (9%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           +  ++K L+  LK M  +G    +   SV  T +I    +EG   ++      M   +C 
Sbjct: 650 KQQDMKRLFGLLKKMYDQG----LRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCF 705

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V  Y   +N LC+VG  ++A  L E+M        P+  TY   + S  K G      
Sbjct: 706 PNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANI--SPNSVTYGCFLDSLTKEG------ 757

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + EA  L   ML KG + +   YN LI G CK  R+  A ++  +M + G  P+
Sbjct: 758 -----NMKEATDLHHEML-KGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPD 811

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            +TY++ I  +    ++  A+E+   M  L  GV P S ++  +I+  C  G + +A + 
Sbjct: 812 CITYSTIIYEHCRSGDVGAAVELWDTM--LRKGVEPDSVAFNLLIYGCCVNGALDKAFEL 869

Query: 381 LAELVDGGSVPRE 393
             +++  G  PR+
Sbjct: 870 RNDMLSRGLKPRQ 882



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 25/193 (12%)

Query: 167 VTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           ++ +SVT  C +  L +EG + EA    + M +     +   YN++I   C++G   +A 
Sbjct: 739 ISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLK-GLLANTATYNILIRGFCKLGRLIEAT 797

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            +L +M   G    PD  TY+ +I  +C+ G            +  A  L+  ML KG  
Sbjct: 798 KVLSEMTENGIF--PDCITYSTIIYEHCRSG-----------DVGAAVELWDTMLRKGVE 844

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY---------NSFIRYYSVV 335
           PD VA+N LI GCC    +++A EL +DM  +G  P ++           N  +    V 
Sbjct: 845 PDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCNFLMHGGCVT 904

Query: 336 NEIDKAIEMMRKM 348
            E+D A+ +   M
Sbjct: 905 GEVDTALRLYHSM 917



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 105/232 (45%), Gaps = 16/232 (6%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M+  R    +  YNV+I+ LC+ G   +A  + + +   G +   DV TY  L+  +C+ 
Sbjct: 244 MESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLK--EDVVTYCTLVLGFCRV 301

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                      ++  +   L   M+  GFVP   A + L+DG  K   I+ A +L   + 
Sbjct: 302 -----------QQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLG 350

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGR 373
           + G +PN   YN+ I       ++DKA  + + M ++N  +P +  +Y+ +I + C+ G 
Sbjct: 351 RFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMN--LPLNDVTYSILIDSFCKRGM 408

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           +  A  +   +++ G     Y Y  + +      + S  +    K I +G+E
Sbjct: 409 LDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLE 460



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 24/229 (10%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PD Y  + VI +LC + +F +A+  +  ME   F     + TY +LI   CK G     
Sbjct: 215 KPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLS--IVTYNVLIHGLCKGG----- 267

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  + EA  + + +  KG   DVV Y  L+ G C+  + +  + L ++M + G +P
Sbjct: 268 ------GVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVP 321

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
                +  +        ID A +++ K+      +P    Y  +I+ALC+ G  L+  + 
Sbjct: 322 TEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGF-LPNLFVYNALINALCK-GEDLDKAEL 379

Query: 381 LAELVDGGSVP-REYTYKLVCDA------LNAAEE--PSLLDDGLRKRI 420
           L + +   ++P  + TY ++ D+      L+ AE     +++DG+R+ I
Sbjct: 380 LYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETI 428



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 7/196 (3%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           ++ ++++AL +   F  A  LL  + L G   P  V+   +     CK+    G    + 
Sbjct: 98  SFAILVHALVQNKLFWPANSLLHTLLLRGSD-PKFVFEKFLESHKQCKFSSTLGFDFLVH 156

Query: 266 R-----RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+++A  + RLML    +P+V   + +++G  +  +     E+FD+    G  P
Sbjct: 157 SYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVNAGVKP 216

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +  T ++ IR    + +  +A E +  M++ N    +  +Y  +IH LC+ G VLEA + 
Sbjct: 217 DPYTCSAVIRSLCELKDFCRAKEKILWMES-NRFDLSIVTYNVLIHGLCKGGGVLEALEV 275

Query: 381 LAELVDGGSVPREYTY 396
              L + G      TY
Sbjct: 276 RKSLREKGLKEDVVTY 291


>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
 gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
          Length = 319

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 131/262 (50%), Gaps = 50/262 (19%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M  F   PD   +N++++ LC+ G  ++A+ +++ M   G    P+  TY+ L++ Y   
Sbjct: 1   MTSFIIMPDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVE--PNTVTYSSLMNGY--- 55

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD--- 311
                    ++ R++EA  +F  M+ +G +PDV++YN LI+GCCK  RI+ A ++FD   
Sbjct: 56  --------LLQNRVFEARKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMS 107

Query: 312 ---------------------------DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
                                      DM+ +GC P+ VTY+ F+   S    +D+A+E+
Sbjct: 108 FRGLIPNTATYNTLLGGFWKQKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALEL 167

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
            R+MQN N+  P    Y  +I A+C++G++ +AR+   +L   G +P   ++  +   L 
Sbjct: 168 FREMQN-NYLNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLC 226

Query: 405 AAEEPSLLDD---GLRKRIRDG 423
                 LLD+     R+  RDG
Sbjct: 227 ---REGLLDEAYKAFRQMERDG 245



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 106/246 (43%), Gaps = 22/246 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EA   F  M    C PDV +YN++IN  C+    ++A+ + ++M   G    P+  TY
Sbjct: 61  VFEARKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGL--IPNTATY 118

Query: 245 TILISSYCKYGMQ-------TGCRKAI------------RRRIWEANHLFRLMLFKGFVP 285
             L+  + K  +Q        GC   +            +  + +A  LFR M      P
Sbjct: 119 NTLLGGFWKQKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNP 178

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           D+V YN LID  CK+ ++E A ELF  ++ KG +P+  ++ S I        +D+A +  
Sbjct: 179 DLVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAF 238

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           R+M+  +   P   SY  I+    +      A     E+ D G      T  L  D L+ 
Sbjct: 239 RQMER-DGCPPDCCSYNVIVRGFLQNNGASRAEQLFQEMFDRGFSADALTRTLAADLLSK 297

Query: 406 AEEPSL 411
            +   L
Sbjct: 298 DDNLGL 303



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 19/181 (10%)

Query: 148 VKGLW----DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           + G W       KDM  +G    + T S+   +  L ++G +++AL  F  M+     PD
Sbjct: 122 LGGFWKQKIQLFKDMHAQGCSPDLVTYSI--FLHGLSKQGYLDQALELFREMQNNYLNPD 179

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +  YN++I+A+C+ G    AR L  ++ + G    PDV ++T +IS  C+ G+       
Sbjct: 180 LVIYNILIDAMCKSGKLEDARELFLKLHVKGLL--PDVRSWTSIISGLCREGL------- 230

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + EA   FR M   G  PD  +YN ++ G  +     RA +LF +M  +G   + +
Sbjct: 231 ----LDEAYKAFRQMERDGCPPDCCSYNVIVRGFLQNNGASRAEQLFQEMFDRGFSADAL 286

Query: 324 T 324
           T
Sbjct: 287 T 287



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    S T +I  L  EGL++EA   F +M++  C PD  +YNV++    +    ++A
Sbjct: 210 GLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYNVIVRGFLQNNGASRA 269

Query: 224 RFLLEQMELPGFRCPPDVYTYTI 246
             L ++M   GF    D  T T+
Sbjct: 270 EQLFQEMFDRGF--SADALTRTL 290


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 147/355 (41%), Gaps = 86/355 (24%)

Query: 87  AYNIANNVLVLGPAAYRDPQKVTL-----GLNKATEFYHWVERFFDFFHNEMTCKEMGIV 141
           A+++ + ++ LG      P  VT      GL K  +F   VE F DF      C+    V
Sbjct: 149 AFSVFSKMIKLG----LQPDAVTFNTLINGLCKVGKFAQAVEFFDDF--EASGCQP--TV 200

Query: 142 FARGNNVKGL---------WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF 192
           +     + GL             K M   G    V T ++  LI  L ++ LVNEAL  F
Sbjct: 201 YTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNI--LIDSLCKDKLVNEALDIF 258

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
             MK  R  PD++ YN +I  LC    + +A  LL +M        P+++T+ +L+ + C
Sbjct: 259 SYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEM--TSLNIMPNIFTFNVLVDAIC 316

Query: 253 KYGMQTGCRK------------------------AIRRRIWEANHLFRLMLFKGFVPDVV 288
           K G  +  +                         ++R  I EA  LF  M+ KG  PD  
Sbjct: 317 KEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAF 376

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           +YN LI G CK  RI+ A +LF++M  +G  P+ V YN+                     
Sbjct: 377 SYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNT--------------------- 415

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                          +IH LC+ GR+ EA+D    +   G++P  +TY ++ D  
Sbjct: 416 ---------------LIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGF 455



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 17/243 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  + +EG V+EA   F  M +    PDV  Y+ ++          +AR L + M   G
Sbjct: 311 LVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKG 370

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD ++Y ILI  YCK            +RI EA  LF  M+ +G  PD V YN LI
Sbjct: 371 --CKPDAFSYNILIKGYCK-----------AKRIDEAKQLFNEMIHQGLTPDNVNYNTLI 417

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C+  R+  A +LF +M+  G +P+  TY+  +  +     + KA  + R MQ+  + 
Sbjct: 418 HGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQS-TYL 476

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
            P  + Y  +I A+C+ G + +AR   +EL   G +P    Y  +   +N   +  LLD+
Sbjct: 477 KPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTI---INNLCKEGLLDE 533

Query: 415 GLR 417
            L 
Sbjct: 534 ALE 536



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 110/226 (48%), Gaps = 14/226 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +++ LI        V+ A + F +M +   +PD   +N +IN LC+VG F +A    +  
Sbjct: 132 TLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDF 191

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E  G  C P VYTYT +I+  CK G  T            A  LF+ M   G  P+VV Y
Sbjct: 192 EASG--CQPTVYTYTTIINGLCKIGETTA-----------AAGLFKKMEEAGCQPNVVTY 238

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LID  CK   +  AL++F  M  K   P+  TYNS I+         +A  ++ +M +
Sbjct: 239 NILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTS 298

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           LN  +P   ++  ++ A+C+ G+V EA+     + + G  P   TY
Sbjct: 299 LNI-MPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTY 343



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 15/220 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL-EQMELPGFRCPPDVYT 243
           +++ALA+F  M      P +  +  +++A+ ++G +  A   L +QMEL G    PD+YT
Sbjct: 75  IDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGL--SPDIYT 132

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
            +ILI  +              +R+  A  +F  M+  G  PD V +N LI+G CK  + 
Sbjct: 133 LSILIDCFSHL-----------QRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKF 181

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
            +A+E FDD    GC P   TY + I     + E   A  + +KM+      P   +Y  
Sbjct: 182 AQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQ-PNVVTYNI 240

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +I +LC+   V EA D  + +      P  +TY  +   L
Sbjct: 241 LIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGL 280



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 14/225 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LIK   +   ++EA   F  M      PD   YN +I+ LC++G   +A+ L + M
Sbjct: 377 SYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNM 436

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PD++TY++L+  +CK G            + +A  LFR+M      PD+  Y
Sbjct: 437 HSNG--NLPDLFTYSMLLDGFCKEGY-----------LGKAFRLFRVMQSTYLKPDIAMY 483

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LID  CK   ++ A +LF ++  +G +PN   Y + I        +D+A+E  R M+ 
Sbjct: 484 NILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEG 543

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
            +   P   SY  II    +      A   + E+ D G V    T
Sbjct: 544 -DGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGT 587



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 15/172 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D  K+M    NG L    + + L+    +EG + +A   F  M+    +PD+  YN++I+
Sbjct: 431 DLFKNM--HSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILID 488

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           A+C+ GN   AR L  ++ + G    P+V  YT +I++ CK G+           + EA 
Sbjct: 489 AMCKFGNLKDARKLFSELFVQGLL--PNVQIYTTIINNLCKEGL-----------LDEAL 535

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             FR M   G  PD  +YN +I G  +     RA +L  +M  +G +    T
Sbjct: 536 EAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGT 587


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 135/288 (46%), Gaps = 48/288 (16%)

Query: 160 RRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           R+ +G+LV T+ V  + +I  L +E LV EA   + +M   +  PDV  ++ +I   C V
Sbjct: 177 RKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMV 236

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI------------- 264
           G F +A  L  +M L      PDV T+ IL+ + CK G     +  +             
Sbjct: 237 GQFKEAFGLFHEMVLTNIN--PDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKA 294

Query: 265 --------RRRIW--------------------EANHLFRLMLFKGFVPDVVAYNCLIDG 296
                   +RR+                     EA  LF  M  KG  PD V Y+ LIDG
Sbjct: 295 KHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDG 354

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV- 355
            CK+ RI  A EL D M+ +G   + +TY SF+      +++DKA+ +++K++  + G+ 
Sbjct: 355 LCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIK--DQGIQ 412

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           P  ++Y  +I  LC+ GR   A+    +L+  G     +TY ++ + L
Sbjct: 413 PNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGL 460



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 14/218 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S T +IK L +  +V+EAL+ F  M+     PD   Y+ +I+ LC+    + A  LL+QM
Sbjct: 312 SYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQM 371

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G   P DV TYT  + + CK             ++ +A  L + +  +G  P++  Y
Sbjct: 372 HARG--QPADVITYTSFLHALCK-----------NHQVDKAVALVKKIKDQGIQPNINTY 418

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LIDG CK  R E A  +F D+  KG      TYN  I    +    D+A+ ++ KM++
Sbjct: 419 NILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMED 478

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            N   P   +Y  II AL +     +A   L E++  G
Sbjct: 479 -NGCTPDVVTYETIIRALFKNDENHKAEKLLREMIARG 515



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 14/257 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  +   L  ++ E   VN+A   F  + + R  PDV++Y ++I  LC++   ++A  L 
Sbjct: 274 TKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLF 333

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            +M   G    PD  TY+ LI   CK             RI  A  L   M  +G   DV
Sbjct: 334 NEMRCKGI--TPDKVTYSSLIDGLCK-----------SERISHAWELLDQMHARGQPADV 380

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           + Y   +   CK +++++A+ L   +  +G  PN  TYN  I         + A  + + 
Sbjct: 381 ITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQD 440

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           +    + V T  +Y  +I+ LC  G   EA   L ++ D G  P   TY+ +  AL   +
Sbjct: 441 LLIKGYKV-TVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKND 499

Query: 408 EPSLLDDGLRKRIRDGI 424
           E    +  LR+ I  G+
Sbjct: 500 ENHKAEKLLREMIARGL 516



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 98/216 (45%), Gaps = 14/216 (6%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A++ ++R++     P +  +N VIN  C +G  + A  +L ++   G+   PD  T T L
Sbjct: 67  AISLYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYH--PDTITLTTL 124

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I   C  G           ++ EA H    ++ +GF  + V+Y  LI+G CK      AL
Sbjct: 125 IKGLCLNG-----------KVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAAL 173

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           ++   ++ K    N V Y++ I        + +A E+  +M  +    P   +++ +I+ 
Sbjct: 174 QVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMI-VKKVSPDVVTFSALIYG 232

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            C  G+  EA     E+V     P   T+ ++ DAL
Sbjct: 233 FCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDAL 268



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 29/205 (14%)

Query: 131 NEMTCKEMGIV------------FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV 178
           NEM CK  GI               +   +   W+ L  M  RG    V T   T  +  
Sbjct: 334 NEMRCK--GITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVIT--YTSFLHA 389

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L +   V++A+A   ++K    +P++  YN++I+ LC+ G F  A+ + + + + G++  
Sbjct: 390 LCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVT 449

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
             V+TY I+I+  C  G+             EA  L   M   G  PDVV Y  +I    
Sbjct: 450 --VWTYNIMINGLCLEGL-----------FDEAMTLLEKMEDNGCTPDVVTYETIIRALF 496

Query: 299 KTYRIERALELFDDMNKKGCIPNRV 323
           K     +A +L  +M  +G +  +V
Sbjct: 497 KNDENHKAEKLLREMIARGLLEEKV 521



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 21/206 (10%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           LGE       LA   +M      PD      +I  LC  G  ++A    + +   GFR  
Sbjct: 96  LGEMDFAFSVLAKILKMGY---HPDTITLTTLIKGLCLNGKVHEALHFHDHVIARGFRL- 151

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
            +  +Y ILI+  CK G      + +R+           +  K    +VV Y+ +ID  C
Sbjct: 152 -NEVSYGILINGLCKMGETRAALQVLRK-----------IDGKLVNTNVVMYSTIIDSLC 199

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVP 356
           K   +  A EL+  M  K   P+ VT+++ I  + +V +  +A  +  +M   N+N   P
Sbjct: 200 KEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNIN---P 256

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLA 382
              ++  ++ ALC+ G   E ++ LA
Sbjct: 257 DVCTFNILVDALCKEGSTKETKNVLA 282



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 7/155 (4%)

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT----YRIERALELFDDMNKKGCIPNRV 323
           + +A   F  ML     P ++ +N ++    K+    Y I  A+ L+  +      P+ V
Sbjct: 27  VHDAISSFYRMLRMNPSPSIIEFNKILGSLVKSNNNNYPI--AISLYHRLQLNAITPSIV 84

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           T+N+ I  Y  + E+D A  ++ K+  + +  P + + T +I  LC  G+V EA  F   
Sbjct: 85  TFNTVINCYCHLGEMDFAFSVLAKILKMGYH-PDTITLTTLIKGLCLNGKVHEALHFHDH 143

Query: 384 LVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRK 418
           ++  G    E +Y ++ + L    E       LRK
Sbjct: 144 VIARGFRLNEVSYGILINGLCKMGETRAALQVLRK 178


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 129/263 (49%), Gaps = 18/263 (6%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           +K       +M RRG+   V + S   +I  L + G  + AL    +M++  C+P++ AY
Sbjct: 178 IKEAVGLFNEMVRRGHQPDVISYST--VINGLCKSGNTSMALQLLRKMEEKGCKPNLVAY 235

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
             +I++LC+    N A  LL +M   G   PPDV TY+ ++  +C  G            
Sbjct: 236 TTIIDSLCKDTLVNDAMDLLSEMVDRGI--PPDVVTYSTILHGFCSLG-----------H 282

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + EA  LF  M+ +  +P+ V +  L+DG CK   +  A  +F+ M KKG  PN  TYN+
Sbjct: 283 LNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNA 342

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            +  Y + N++D+A +++  M  ++ G  P   SY  +I+  C+  R+ EA+  L E+ +
Sbjct: 343 LMDGYCLNNQMDEAQKVLDIM--VDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSE 400

Query: 387 GGSVPREYTYKLVCDALNAAEEP 409
               P   TY  +   L     P
Sbjct: 401 KELTPDTVTYSTLMQGLCQVGRP 423



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 14/242 (5%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G   +  T + T L+  L +EG+V+EA   F  M +    P+ Y YN +++  C     +
Sbjct: 295 GRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMD 354

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A+ +L+ M   G  C P V++Y ILI+ YCK           RRR+ EA  L   M  K
Sbjct: 355 EAQKVLDIMVDKG--CAPVVHSYNILINGYCK-----------RRRLDEAKSLLVEMSEK 401

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
              PD V Y+ L+ G C+  R + AL LF +M   G +P+ +TY++ +        +D+A
Sbjct: 402 ELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEA 461

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           +++++ MQ  +   P    Y  +I  +  AG++  A++  ++L   G  P   TY ++  
Sbjct: 462 LKLLKSMQE-SKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIK 520

Query: 402 AL 403
            L
Sbjct: 521 GL 522



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 126/268 (47%), Gaps = 40/268 (14%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           + NG  ++ +S++           +++ALA+FYRM +   RP V  +   + ++ +   +
Sbjct: 60  QNNGGFLSNNSIS-----------IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQY 108

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYC----------------KYGMQTGC---- 260
           +    L  QM+L  F    +VY+  ILI+  C                K G+Q       
Sbjct: 109 STVVSLCNQMDL--FGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFN 166

Query: 261 ----RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                + I   I EA  LF  M+ +G  PDV++Y+ +I+G CK+     AL+L   M +K
Sbjct: 167 TLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEK 226

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVL 375
           GC PN V Y + I        ++ A++++ +M  ++ G+P    +Y+ I+H  C  G + 
Sbjct: 227 GCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEM--VDRGIPPDVVTYSTILHGFCSLGHLN 284

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           EA     E+V    +P   T+ ++ D L
Sbjct: 285 EATILFNEMVGRNVMPNTVTFTILVDGL 312



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 14/232 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S+  LI  L     V  A++   +M +   +PD   +N +IN  C  G   +A  L  +M
Sbjct: 129 SLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEM 188

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +  PDV +Y+ +I+  CK G  +            A  L R M  KG  P++VAY
Sbjct: 189 VRRGHQ--PDVISYSTVINGLCKSGNTS-----------MALQLLRKMEEKGCKPNLVAY 235

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             +ID  CK   +  A++L  +M  +G  P+ VTY++ +  +  +  +++A  +  +M  
Sbjct: 236 TTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVG 295

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            N  +P + ++T ++  LC+ G V EAR     +   G+ P  YTY  + D 
Sbjct: 296 RNV-MPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDG 346



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 83/180 (46%), Gaps = 13/180 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + L++ L + G   EAL  F  M      PD+  Y+ +++ LC+ G+ ++A  LL+
Sbjct: 407 TVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLK 466

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M+    +  PD+  Y ILI      GM       I  ++  A  LF  +   G  P + 
Sbjct: 467 SMQES--KIEPDIVLYNILIE-----GM------FIAGKLEVAKELFSKLFADGIQPTIR 513

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  +I G  K    + A ELF  M   G +PN  +YN  I+ +    +   AI ++ +M
Sbjct: 514 TYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEM 573



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 3/140 (2%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P VV +   +    K  +    + L + M+  G   N  + N  I     +N +  AI +
Sbjct: 90  PSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISV 149

Query: 345 MRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + KM  L  G+ P + ++  +I+  C  G + EA     E+V  G  P   +Y  V + L
Sbjct: 150 LGKMFKL--GIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGL 207

Query: 404 NAAEEPSLLDDGLRKRIRDG 423
             +   S+    LRK    G
Sbjct: 208 CKSGNTSMALQLLRKMEEKG 227


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 17/239 (7%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRM---KQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           T  S   ++ V+ + G  + AL  +  +   K     P+V ++N++I ++C++G  + A 
Sbjct: 142 TVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNAI 201

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            L  +M  P  +C PD YTY  L+   CK             RI EA  L   M  +G  
Sbjct: 202 ELFREM--PVRKCVPDAYTYCTLMDGLCKVD-----------RIDEAVSLLDEMQIEGCF 248

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P    +N LI+G CK     R  +L D+M  KGC+PN VTYN+ I    +  ++DKA+ +
Sbjct: 249 PSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSL 308

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + +M + +  VP   +Y  II+ L + GR L+    L  + + G +  EY Y ++   L
Sbjct: 309 LDRMVS-SKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGL 366



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 121/246 (49%), Gaps = 18/246 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  +G +++AL+   RM   +C P+   Y  +IN L + G       +L  ME  G
Sbjct: 292 LIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERG 351

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           +    + Y Y++L+S   K G           +  EA  LF+  + KG   + V Y+ L+
Sbjct: 352 YIV--NEYVYSVLVSGLFKEG-----------KSEEAMRLFKESMDKGCKLNTVLYSALV 398

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG C+  + + A+++  +M  KGC PN  T++S ++ +  V    KAIE+ + M  +N  
Sbjct: 399 DGLCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCA 458

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPS 410
                 Y+ +IH LC+ G+V+EA    A+++  G  P    Y    + +CDA +  E   
Sbjct: 459 -ENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALK 517

Query: 411 LLDDGL 416
           L ++ L
Sbjct: 518 LYNEML 523



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 41/250 (16%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L +M+ +G      T S   L+K   E G  ++A+  +  M +  C  +   Y+V+I+ 
Sbjct: 413 ILSEMTDKGCAPNAFTFS--SLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHG 470

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+ G   +A  +  +M   G  C PDV  Y+ +I   C  G            + EA  
Sbjct: 471 LCKDGKVMEAMMVWAKMLATG--CRPDVVAYSSMIQGLCDAG-----------SVEEALK 517

Query: 274 LFRLMLF--KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
           L+  ML       PDV+ YN L +  CK   I RA++L + M  +GC P+ VT N F+R 
Sbjct: 518 LYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRM 577

Query: 332 Y-----------SVVNEIDKAIEMMRKMQNLNHG-----------VPTSSSYTPIIHALC 369
                         ++E+   + ++++ +NL               P +S++  ++H LC
Sbjct: 578 LREKLDPPQDGAKFLDEL--VVRLLKRQRNLGASKIVEVMLQKFLSPKASTWARVVHELC 635

Query: 370 EAGRVLEARD 379
           +  ++    D
Sbjct: 636 QPKKIQAVID 645



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 111/247 (44%), Gaps = 14/247 (5%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G +V     + L+  L +EG   EA+  F       C+ +   Y+ +++ LCR    ++A
Sbjct: 351 GYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEA 410

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             +L +M   G  C P+ +T++ L+  + + G      KAI   +W+       M     
Sbjct: 411 MKILSEMTDKG--CAPNAFTFSSLMKGFFEVG---NSHKAI--EVWKD------MTKINC 457

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
             + V Y+ LI G CK  ++  A+ ++  M   GC P+ V Y+S I+       +++A++
Sbjct: 458 AENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALK 517

Query: 344 MMRKMQNLN-HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +  +M  L     P   +Y  + +ALC+   +  A D L  ++D G  P   T  +    
Sbjct: 518 LYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRM 577

Query: 403 LNAAEEP 409
           L    +P
Sbjct: 578 LREKLDP 584


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+ L   G    ALA    M + RC PDV  Y +++ A C+   + +A  LL++M   G
Sbjct: 38  LIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKG 97

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD+ TY ++++  C+ G           R+ +A    + +   G  P+ V+YN ++
Sbjct: 98  --CTPDIVTYNVVVNGICQEG-----------RVDDAIEFLKNLPSYGCEPNTVSYNIVL 144

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   R E A EL  +M +KGC PN VT+N  I +      ++ A+E++ ++      
Sbjct: 145 KGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGC- 203

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P S SY P++HA C+  ++ +A  FL  +V  G  P   +Y  +  AL
Sbjct: 204 TPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTAL 252



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 24/272 (8%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           E TCK  G         K     L +M  +G    + T +V  ++  + +EG V++A+  
Sbjct: 75  EATCKRSG--------YKQAMKLLDEMRDKGCTPDIVTYNV--VVNGICQEGRVDDAIEF 124

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              +  + C P+  +YN+V+  LC    +  A  L+ +M   G  CPP+V T+ +LIS  
Sbjct: 125 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG--CPPNVVTFNMLISFL 182

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           C+ G+           +  A  +   +   G  P+ ++YN L+   CK  ++++A+   D
Sbjct: 183 CRKGL-----------VEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLD 231

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
            M  +GC P+ V+YN+ +       E+D A+E++ ++++     P   SY  +I  L +A
Sbjct: 232 LMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKD-KGCAPVLISYNTVIDGLTKA 290

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           G+  EA + L E+V  G  P   TY  +   L
Sbjct: 291 GKTKEALELLNEMVSKGLQPDIITYSTIAAGL 322



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 133/287 (46%), Gaps = 23/287 (8%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
            RG     L    + + RR   ++VT    T L++   +     +A+     M+   C P
Sbjct: 44  GRGRTANALAVLDEMLRRRCVPDVVT---YTILLEATCKRSGYKQAMKLLDEMRDKGCTP 100

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D+  YNVV+N +C+ G  + A   L+   LP + C P+  +Y I++   C          
Sbjct: 101 DIVTYNVVVNGICQEGRVDDAIEFLKN--LPSYGCEPNTVSYNIVLKGLCT--------- 149

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               R  +A  L   M  KG  P+VV +N LI   C+   +E ALE+ + + K GC PN 
Sbjct: 150 --AERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNS 207

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           ++YN  +  +    ++DKA+  +  M  ++ G  P   SY  ++ ALC +G V  A + L
Sbjct: 208 LSYNPLLHAFCKQKKMDKAMAFLDLM--VSRGCYPDIVSYNTLLTALCRSGEVDVAVELL 265

Query: 382 AELVDGGSVPREYTYKLVCDALNAA----EEPSLLDDGLRKRIRDGI 424
            +L D G  P   +Y  V D L  A    E   LL++ + K ++  I
Sbjct: 266 HQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDI 312



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 132/271 (48%), Gaps = 26/271 (9%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + + +M ++G    V T ++  LI  L  +GLV  AL    ++ ++ C P+  +YN +++
Sbjct: 158 ELMGEMGQKGCPPNVVTFNM--LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLH 215

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           A C+    +KA   L+ M   G  C PD+ +Y  L+++ C+ G            +  A 
Sbjct: 216 AFCKQKKMDKAMAFLDLMVSRG--CYPDIVSYNTLLTALCRSG-----------EVDVAV 262

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L   +  KG  P +++YN +IDG  K  + + ALEL ++M  KG  P+ +TY++     
Sbjct: 263 ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGL 322

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
              + I+ AI    K+Q++  G+ P +  Y  II  LC+      A D  A ++  G +P
Sbjct: 323 CREDRIEDAIRAFGKVQDM--GIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMP 380

Query: 392 REYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            E TY ++ + L          +GL K  RD
Sbjct: 381 NESTYTILIEGLAY--------EGLIKEARD 403



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 19/195 (9%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           AYN ++   C  G  + AR L+ +M +      PD YTY  LI   C  G          
Sbjct: 2   AYNAMVAGYCGAGQLDAARRLVAEMPVE-----PDAYTYNTLIRGLCGRG---------- 46

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            R   A  +   ML +  VPDVV Y  L++  CK    ++A++L D+M  KGC P+ VTY
Sbjct: 47  -RTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTY 105

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           N  +        +D AIE ++ +   ++G  P + SY  ++  LC A R  +A + + E+
Sbjct: 106 NVVVNGICQEGRVDDAIEFLKNLP--SYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEM 163

Query: 385 VDGGSVPREYTYKLV 399
              G  P   T+ ++
Sbjct: 164 GQKGCPPNVVTFNML 178



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 33/152 (21%)

Query: 288 VAYNCLIDGCCK---------------------TY-----------RIERALELFDDMNK 315
           +AYN ++ G C                      TY           R   AL + D+M +
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLR 60

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
           + C+P+ VTY   +      +   +A++++ +M++     P   +Y  +++ +C+ GRV 
Sbjct: 61  RRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRD-KGCTPDIVTYNVVVNGICQEGRVD 119

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           +A +FL  L   G  P   +Y +V   L  AE
Sbjct: 120 DAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAE 151


>gi|357495705|ref|XP_003618141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493156|gb|AES74359.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 846

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 150/312 (48%), Gaps = 59/312 (18%)

Query: 149 KGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           KGL  F K++     G  V    +  CL+  L +   + E    +  M +     + Y +
Sbjct: 211 KGLETFWKNVE----GSFVPNVVACNCLLNGLSKINYIGECWEVYEEMGRLGIHRNGYTF 266

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           N++ + LCR G+ +K    LE+ME  GF   PD+ TY ILI+ YCK           +RR
Sbjct: 267 NIMTHVLCREGDSDKVNGFLEKMEEEGFE--PDLVTYNILINGYCK-----------KRR 313

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + +A +L+++M  +G VP++++Y+ L++G CK  +I+ A +LF+ M ++G  P+ V+YN+
Sbjct: 314 LEDAFYLYKIMGIRGVVPNLISYSALMNGLCKEGKIKEAHQLFNQMVQRGIDPDVVSYNT 373

Query: 328 FIRYY-----------SVVNE-------------------------IDKAIEMMRKMQNL 351
            I  Y           S+++E                         +  A+ M+ ++Q  
Sbjct: 374 LISGYCKEGGKMQMCRSLLHEMIGIGIRPDNVTCRIVFQGYTREGKLLSALNMVAELQRF 433

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV-DGGSVPREYTYKLVCDAL---NAAE 407
              +P  + Y  ++ ALC+ GR   AR FL  +  DG  VP   TY  + ++L   N  E
Sbjct: 434 GIKIP-ENLYDYLLVALCKEGRPFAARSFLIRISQDGDYVPEMSTYIKLAESLCSFNNVE 492

Query: 408 EPSLLDDGLRKR 419
           E  +L   + K+
Sbjct: 493 EALILKSEMAKK 504



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 99/240 (41%), Gaps = 15/240 (6%)

Query: 171 SVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           +VTC I   G   EG +  AL     +++F  +     Y+ ++ ALC+ G    AR  L 
Sbjct: 404 NVTCRIVFQGYTREGKLLSALNMVAELQRFGIKIPENLYDYLLVALCKEGRPFAARSFLI 463

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           ++   G    P++ TY  L  S C +             + EA  L   M  K    ++ 
Sbjct: 464 RISQDG-DYVPEMSTYIKLAESLCSFN-----------NVEEALILKSEMAKKSMKLNLT 511

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  +I   C+  R   A  L ++M   G +P+     + I  Y   N++DKA+ +++  
Sbjct: 512 TYKAIISCLCRVKRTSEAENLLEEMVSLGILPDLEIKRALINGYCEENDVDKAVSLLKFF 571

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
                 V  + SY  I+   CE G V E  +   +LV  G VP   T K V   L    E
Sbjct: 572 AK-EFQVYDTESYNAIVKVFCEVGNVAELMELQDKLVKIGYVPNSLTCKYVIRGLQKGME 630


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 25/235 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G  + A+     M Q  C+P+V+AYN +I++LC+     +A  L  +M   G
Sbjct: 139 LINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKG 198

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL---MLFKGFVPDVVAYN 291
               PD++TY  LI + C               + E  H+  L   M+    +PDVV++N
Sbjct: 199 I--SPDIFTYNSLIHALCN--------------LCEWKHVATLLNEMVDSKIMPDVVSFN 242

Query: 292 CLIDGCCKTYRIERALELFDDM-NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-- 348
            ++D  CK  ++  A ++ D M  + GC+PN ++YN+ I  Y  +  IDKA+ +  +M  
Sbjct: 243 TVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCR 302

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           Q L   +P + +Y+ +IH LC   R+ +A     E+V    +P   TY+++ D L
Sbjct: 303 QEL---IPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYL 354



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 14/240 (5%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++ A+++F RM + +  P    +N ++ ++ ++ + +    L  QM+   F  PP++YT 
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMD--SFGIPPNIYTL 99

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI+S+C            R +I EA HLF  M+ +GF PDVV Y  LI+G CK     
Sbjct: 100 HILINSFCHLN---------RGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTS 150

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A+ L   M +K C PN   YN+ I       ++ +A  +  +M  +  G+ P   +Y  
Sbjct: 151 AAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEM--VTKGISPDIFTYNS 208

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           +IHALC           L E+VD   +P   ++  V DAL    + +   D + K I+ G
Sbjct: 209 LIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRG 268



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 13/210 (6%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            M   +  PDV ++N V++ALC+ G   +A  ++++M   G  C P+V +Y  LI+ YCK
Sbjct: 228 EMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRG-GCMPNVISYNTLINGYCK 286

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                       +RI +A +LF  M  +  +PD V Y+ LI G C   R++ A+ LF +M
Sbjct: 287 I-----------QRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEM 335

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
                IPN VTY   + Y      + +A+ +++ ++  N   P        I  +C AG 
Sbjct: 336 VACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLD-PDIQVNNIAIDGMCRAGE 394

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  ARD  + L   G  P  +TY ++ + L
Sbjct: 395 LEAARDLFSNLSSKGLQPDVWTYSIMINGL 424



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 13/180 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + LI  L     + +A+A F+ M      P++  Y ++++ LC+     +A  LL+
Sbjct: 309 TVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLK 368

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            +E  G    PD+    I I   C+ G            +  A  LF  +  KG  PDV 
Sbjct: 369 AIE--GSNLDPDIQVNNIAIDGMCRAG-----------ELEAARDLFSNLSSKGLQPDVW 415

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y+ +I+G C+   ++ A +LF +M++ GC  N   YN+  R +   NE  +AI+++++M
Sbjct: 416 TYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEM 475



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 100/234 (42%), Gaps = 23/234 (9%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           S   ++  L +EG V EA     +M Q   C P+V +YN +IN  C++   +KA +L  +
Sbjct: 240 SFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGE 299

Query: 230 M---ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
           M   EL      PD  TY+ LI   C              R+ +A  LF  M+    +P+
Sbjct: 300 MCRQELI-----PDTVTYSTLIHGLCHV-----------ERLQDAIALFHEMVACSQIPN 343

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           +V Y  L+D  CK   +  A+ L   +      P+    N  I       E++ A ++  
Sbjct: 344 LVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFS 403

Query: 347 KMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +   + G+ P   +Y+ +I+ LC  G + EA     E+ + G       Y  +
Sbjct: 404 NLS--SKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTI 455



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L +   + EA+A    ++     PD+   N+ I+ +CR G    AR L   +   G
Sbjct: 350 LLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKG 409

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PDV+TY+I+I+  C+ G+           + EA+ LFR M   G   +   YN + 
Sbjct: 410 LQ--PDVWTYSIMINGLCRRGL-----------LDEASKLFREMDENGCTLNGCIYNTIT 456

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
            G  +     RA++L  +M  +G   +  T   F++  S
Sbjct: 457 RGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLS 495



 Score = 41.6 bits (96), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 11/160 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R   ++   D   ++S +G    V T S+  +I  L   GL++EA   F  M +  C  +
Sbjct: 391 RAGELEAARDLFSNLSSKGLQPDVWTYSI--MINGLCRRGLLDEASKLFREMDENGCTLN 448

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              YN +     R    ++A  LL++M   GF    D  T T+ +      G+    ++ 
Sbjct: 449 GCIYNTITRGFLRNNETSRAIQLLQEMVARGF--SADASTMTLFVKMLSDDGLDQSLKQI 506

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           +R    + + ++  ++    + +++  NC  + CC  YRI
Sbjct: 507 LRDFCKQKSWIYENVM---VLQEIILVNC--NFCC--YRI 539


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 137/295 (46%), Gaps = 22/295 (7%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           N +T   M     +   ++G      +M R G    V   S   L+    + G ++E+LA
Sbjct: 222 NLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVV--SYNTLLSGYCKVGCLHESLA 279

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            F  M Q    PDV  +  +I+A C+ GN  +A  L+ QM   G R   +  T+T LI  
Sbjct: 280 VFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRM--NEVTFTALIDG 337

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           +CK G       A+             M   G  P VV YN LI+G CK  R++ A EL 
Sbjct: 338 FCKKGFLDDALLAVEE-----------MRKCGIQPSVVCYNALINGYCKLGRMDLARELI 386

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALC 369
            +M  K   P+ VTY++ I  Y  V  +D A ++ +KM  L  GV P + +Y+ +I  LC
Sbjct: 387 REMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKM--LKKGVLPDAITYSSLIRGLC 444

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRI 420
           E  R+ +A +    ++  G  P E+TY  +    C   N  +  SL D+ +RK +
Sbjct: 445 EEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV 499



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 17/244 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL  M R G    V T ++  L++ L   G + EA+     M+   C P+   YN ++ A
Sbjct: 139 FLSSMLRHGVAPNVYTYNI--LVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAA 196

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            CR G  + A  ++  M   G    P++ T+  +++  CK G   G RK           
Sbjct: 197 FCRAGELDGAERVVSLMREEG-NAKPNLVTFNSMVNGLCKAGRMEGARK----------- 244

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +F  M+ +G  PDVV+YN L+ G CK   +  +L +F +M ++G +P+ VT+ S I    
Sbjct: 245 VFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATC 304

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               +++A+ ++ +M+    G+  +  ++T +I   C+ G + +A   + E+   G  P 
Sbjct: 305 KAGNLEQAVALVAQMR--ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPS 362

Query: 393 EYTY 396
              Y
Sbjct: 363 VVCY 366



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 27/217 (12%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    ++G +++AL     M++   +P V  YN +IN  C++G  + AR L+ +ME 
Sbjct: 332 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA 391

Query: 233 PGFRCPPDVYTYTILISSYCKYGM--------QTGCRKAI----------------RRRI 268
              R  PDV TY+ +IS YCK G         Q   +K +                 +R+
Sbjct: 392 K--RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 449

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +A  LF  ML  G  PD   Y  LIDG CK   +E+AL L D+M +KG +P+ VTY+  
Sbjct: 450 NDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVL 509

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           I   S      +A  ++ K+ +    VP +  Y  ++
Sbjct: 510 INGLSKSARTKEAHRLLFKLYH-EDPVPDNIKYDALM 545



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 46/247 (18%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFL---------------------------LEQM---- 230
           P V AYN V+ AL      +  RFL                           LE+     
Sbjct: 116 PSVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVV 175

Query: 231 -ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
            ++ G  C P+  TY  L++++C+ G   G  + +     E N            P++V 
Sbjct: 176 GDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNA----------KPNLVT 225

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           +N +++G CK  R+E A ++FD+M ++G  P+ V+YN+ +  Y  V  + +++ +  +M 
Sbjct: 226 FNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMT 285

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
                VP   ++T +IHA C+AG + +A   +A++ + G    E T+  + D      + 
Sbjct: 286 QRGL-VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFC---KK 341

Query: 410 SLLDDGL 416
             LDD L
Sbjct: 342 GFLDDAL 348



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 44/222 (19%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + + LI+ L EE  +N+A   F  M Q   +PD + Y  +I+  C+ GN  KA
Sbjct: 428 GVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKA 487

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG--------------------------MQ 257
             L ++M   G    PDV TY++LI+   K                            + 
Sbjct: 488 LSLHDEMIRKGVL--PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 545

Query: 258 TGCRKA-------------IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             C KA             ++  + EA+ +++ ML + +  D   Y+ LI G C+   + 
Sbjct: 546 LCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVR 605

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYY---SVVNEIDKAIE 343
           +AL     M + G  PN  +  S +R      +V E D AI+
Sbjct: 606 KALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQ 647



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 13/151 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           SV  L+K    +GL+ EA   +  M     + D   Y+++I+  CR GN  KA    +QM
Sbjct: 555 SVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQM 614

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              GF   P+  +   L+    + GM           + EA++  + +L    + D  A 
Sbjct: 615 LRSGF--SPNSTSTISLVRGLFEEGM-----------VVEADNAIQDLLTCCPLADAEAS 661

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             LID   K   ++  +++   M + G +P+
Sbjct: 662 KALIDLNRKEGNVDALIDVLCGMARDGLLPS 692


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 122/257 (47%), Gaps = 14/257 (5%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T+S   +   L + G V EA     +M+   C PDV +Y+ VIN  C+VG   +   L+E
Sbjct: 253 TASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIE 312

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M++ G +  P+ YTY  +I   CK G           ++ EA  + R M+ +G  PD V
Sbjct: 313 EMQIKGLK--PNPYTYNGVILLLCKTG-----------KVAEAERVLREMISEGIAPDGV 359

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  LIDG CK   +  A  LFD+M K+   P+ +TY + I        + +A ++  +M
Sbjct: 360 IYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEM 419

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
                  P   +YT +I   C+ G++ EA     +++  G  P   TY  + D L    E
Sbjct: 420 V-CKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGE 478

Query: 409 PSLLDDGLRKRIRDGIE 425
               ++ L +  R G+E
Sbjct: 479 VDTANELLHEMCRKGLE 495



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 14/218 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L   L + G V+ A    + M +     ++Y YN ++N LC+ GN ++A  L++ M
Sbjct: 465 TYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDM 524

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E+ GF   PD  TYT L+ +YCK            R +  A+ L R ML +   P VV +
Sbjct: 525 EVAGFH--PDAVTYTTLMDAYCK-----------SREMVRAHELLRQMLDRELQPTVVTF 571

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L++G C +  +E   +L   M +KG +PN  TYNS I+ Y + N +    E+ R M  
Sbjct: 572 NVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGM-C 630

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
               VP  ++Y  +I   C+A  + EA     ++V  G
Sbjct: 631 AKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG 668



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 116/248 (46%), Gaps = 18/248 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I +L + G V EA      M      PD   Y  +I+  C++GN + A  L ++M+   
Sbjct: 329 VILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQ--K 386

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PD  TYT +I   C+ G           R+ EA+ LF  M+ K   PD V Y  LI
Sbjct: 387 RKISPDFITYTAVICGLCQTG-----------RVMEADKLFHEMVCKRLEPDEVTYTALI 435

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLN 352
           DG CK  +++ A  L + M + G  PN VTY +         E+D A E++ +M  + L 
Sbjct: 436 DGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLE 495

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
             + T   Y  +++ LC+AG + +A   + ++   G  P   TY  + DA   + E    
Sbjct: 496 LNIYT---YNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRA 552

Query: 413 DDGLRKRI 420
            + LR+ +
Sbjct: 553 HELLRQML 560



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 22/257 (8%)

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ-MELPGF 235
           +VL E G+++EA   F +M  +     V + N+ I+ L    + +  +  L+  +E P  
Sbjct: 190 QVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSE--DLDGIKIALKVFVEFPEV 247

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
               +  +Y I+  S C+ G           R+ EA+ L   M  +G +PDV++Y+ +I+
Sbjct: 248 GVCWNTASYNIITHSLCQLG-----------RVVEAHQLLLQMELRGCIPDVISYSTVIN 296

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G C+   ++R L+L ++M  KG  PN  TYN  I       ++ +A  ++R+M  ++ G+
Sbjct: 297 GYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREM--ISEGI 354

Query: 356 -PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPS 410
            P    YT +I   C+ G V  A     E+      P   TY  V    C      E   
Sbjct: 355 APDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADK 414

Query: 411 LLDDGLRKRIR-DGIEY 426
           L  + + KR+  D + Y
Sbjct: 415 LFHEMVCKRLEPDEVTY 431



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 65/152 (42%), Gaps = 26/152 (17%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC-KYGMQTG 259
           +P V  +NV++N  C  G       LL+ M   G    P+  TY  LI  YC +  M+  
Sbjct: 565 QPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIM--PNATTYNSLIKQYCIRNNMRAT 622

Query: 260 -------CRKAI----------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                  C K +                 R + EA  L R M+ KGF   V +YN LI G
Sbjct: 623 TEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKG 682

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
             K  +   A ELF+ M ++G + +R  YN F
Sbjct: 683 FYKRKKFLEARELFEQMRREGLVADREIYNIF 714



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 13/126 (10%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN++I   C+  N  +A FL   M   GF     V +Y  LI  + K        
Sbjct: 636 PDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLT--VSSYNALIKGFYK-------- 685

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              R++  EA  LF  M  +G V D   YN   D      ++E  LEL D+  +K  + +
Sbjct: 686 ---RKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGD 742

Query: 322 RVTYNS 327
             T N+
Sbjct: 743 IQTKNT 748


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 124/257 (48%), Gaps = 17/257 (6%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI+ L   G V +    F  M+ F C PDV  YN +I+ LC+    ++A  LL+
Sbjct: 198 TWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLK 257

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +++     C PDV TYT +IS + K G           ++  A+ LF  M+  G  P VV
Sbjct: 258 EVQSRN-DCSPDVMTYTSIISGFRKLG-----------KLEAASVLFEEMIRSGIEPTVV 305

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            +N LIDG  K   +  A  + + M    CIP+ VT+ S I  Y    +I   +++   M
Sbjct: 306 TFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVM 365

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALN 404
           +  N   P   +Y+ II+ALC+  R+ EARD L +L      P+ + Y  V    C A N
Sbjct: 366 KARNVS-PNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGN 424

Query: 405 AAEEPSLLDDGLRKRIR 421
             E   ++ +   KR R
Sbjct: 425 VDEANVIVTEMEEKRCR 441



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 13/234 (5%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           S+   LI+ L + GL +        M+      D      ++ +  + G F+ A+ L+ +
Sbjct: 94  STYELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIE 153

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           ++    R    VY Y  L++   K G           ++ EA  LF+  L     P+   
Sbjct: 154 VQGEEARISSFVYNY--LLNELVKGG-----------KVHEAIFLFKENLAFHSPPNTWT 200

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           +N LI G C+   +E+  ELF+ M   GC+P+ VTYN+ I      NE+D+A ++++++Q
Sbjct: 201 FNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQ 260

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + N   P   +YT II    + G++  A     E++  G  P   T+ ++ D  
Sbjct: 261 SRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGF 314



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 123/266 (46%), Gaps = 16/266 (6%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           L++A +    V+   D   + MT   +   F +   ++      ++M R G    V T +
Sbjct: 249 LDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFN 308

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           V  LI   G+ G +  A A   +M  + C PDV  +  +I+  CR G+      + + M+
Sbjct: 309 V--LIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMK 366

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
                  P++YTY+++I++ CK             RI EA  L R +      P    YN
Sbjct: 367 --ARNVSPNIYTYSVIINALCK-----------DNRIHEARDLLRQLKCSDVFPKPFIYN 413

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +IDG CK   ++ A  +  +M +K C P++VT+   I  + +   + +A+++ +KM  +
Sbjct: 414 PVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAI 473

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEA 377
               P + + + ++  L +AG+  EA
Sbjct: 474 GCA-PDNITISSLVACLLKAGKPSEA 498


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 110/216 (50%), Gaps = 14/216 (6%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A + F  M +F   P++Y YN +I+  C+ GN  +A  LL +ME       PDV+TYTIL
Sbjct: 357 ARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEME--SLNLSPDVFTYTIL 414

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I+  C              R+ EAN LF+ M  +   P  V YN LI G CK Y IE+AL
Sbjct: 415 INGLCT-----------EERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKAL 463

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           +L  +M   G  PN +T+++ I  Y  V  I  A+ +  +M  +   VP   +YT +I A
Sbjct: 464 DLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEM-TIKGIVPDVVTYTTLIDA 522

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +   + EA    +++++ G  P ++T+  + D  
Sbjct: 523 HFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGF 558



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 104/237 (43%), Gaps = 28/237 (11%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI  L  E  + EA   F RMK  R  P    YN +I+  C+  N  KA  L  +M
Sbjct: 410 TYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEM 469

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P++ T++ LI  YCK            R I  A  L+  M  KG VPDVV Y
Sbjct: 470 TSSGVE--PNIITFSTLIDGYCKV-----------RNIKAAMGLYFEMTIKGIVPDVVTY 516

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LID   K   ++ AL L+ DM + G  PN  T+   +  +     +  AI+   +   
Sbjct: 517 TTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLE--- 573

Query: 351 LNHGVPTSSS-----------YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            N+   T  S           +T +I  LC+ G +L A  F +++  GG  P  ++Y
Sbjct: 574 -NNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSY 629



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 118/276 (42%), Gaps = 16/276 (5%)

Query: 121 WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG 180
           WV R      +   C  +     R      +W   + M  RG    V   SV  L +   
Sbjct: 187 WVSREMRCSPDSKACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSV--LFQCCF 244

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           ++G  ++       M     +P+VY Y + I  LCR     +A  + E M++ G    P+
Sbjct: 245 KQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHG--VVPN 302

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           +YTY+ +I  YCK G            + +A  L++ +L    +P+VV +  L+DG CK 
Sbjct: 303 LYTYSAMIDGYCKTG-----------NLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKA 351

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
             +  A  LF  M K G  PN   YN  I        + +A+ ++ +M++LN   P   +
Sbjct: 352 RELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLS-PDVFT 410

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           YT +I+ LC   R+ EA      + +    P   TY
Sbjct: 411 YTILINGLCTEERLAEANRLFQRMKNERIFPSSVTY 446



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 16/207 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV+ Y+V+     + G  +K   LL++M   G +  P+VY YTI I   C+        
Sbjct: 231 PDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLGVK--PNVYIYTIYIRDLCR-------- 280

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  +F LM   G VP++  Y+ +IDG CKT  + +A  L+ ++     +PN
Sbjct: 281 ---ENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPN 337

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            V + + +  +    E+  A  +   M  +  GV P    Y  +IH  C++G +LEA   
Sbjct: 338 VVVFGTLVDGFCKARELVAARSLFVHM--VKFGVDPNLYVYNCLIHGQCKSGNMLEAMGL 395

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAE 407
           L+E+      P  +TY ++ + L   E
Sbjct: 396 LSEMESLNLSPDVFTYTILINGLCTEE 422



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 44/209 (21%)

Query: 160 RRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           +R   E +  SSVT   LI    +E  + +AL     M      P++  ++ +I+  C+V
Sbjct: 432 QRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKV 491

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR--RRIWEA---- 271
            N   A  L  +M + G    PDV TYT LI ++ K   +   ++A+R    + EA    
Sbjct: 492 RNIKAAMGLYFEMTIKGI--VPDVVTYTTLIDAHFK---EANMKEALRLYSDMLEAGIHP 546

Query: 272 -NHLFRLMLFKGFVPD-----------------------------VVAYNCLIDGCCKTY 301
            +H F   L  GF  +                              V + CLI+G C+  
Sbjct: 547 NDHTFAC-LVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNG 605

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIR 330
            I RA   F DM   G  P+  +Y S ++
Sbjct: 606 YILRASRFFSDMKSGGVTPDIWSYVSMLK 634


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 123/264 (46%), Gaps = 27/264 (10%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L  T++   LI  L  +  + EAL     +      PDVY +N++INALC+VG+ +  
Sbjct: 365 GCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLG 424

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG-----------MQT-GCRKAI------- 264
             L E+M+  G  C PD  TY ILI   C  G           M++ GC ++        
Sbjct: 425 IRLFEEMKSSG--CAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTII 482

Query: 265 -----RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                + RI EA  +F  M   G     V +N LIDG CK  RI+ A EL + M K+G  
Sbjct: 483 DALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQ 542

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ +TYNS + +Y    ++ KA +++  M      +    +Y  +I+ LC+AGR   A  
Sbjct: 543 PSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDV-VTYGTLINGLCKAGRTQVALK 601

Query: 380 FLAELVDGGSVPREYTYKLVCDAL 403
            L  +   G  P    Y  V  +L
Sbjct: 602 LLRGMRIKGIRPTPKAYNPVIQSL 625



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 17/252 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D LK+M    NG   +T +   +I  L ++  + EA   F +M           +N +I+
Sbjct: 461 DLLKEM--ESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLID 518

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+    + A  L+EQM   G +  P   TY  +++ YCK G            + +A 
Sbjct: 519 GLCKAKRIDDATELIEQMVKEGLQ--PSNITYNSILTHYCKQG-----------DLKKAA 565

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +   M   GF  DVV Y  LI+G CK  R + AL+L   M  KG  P    YN  I+  
Sbjct: 566 DILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSL 625

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR-VLEARDFLAELVDGGSVP 391
              N +  A+ + R+M  +    P + +Y  +   LC  G  + EA DFL E+V+ G +P
Sbjct: 626 FRRNNLRDALSLFREMTEVGEP-PDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMP 684

Query: 392 REYTYKLVCDAL 403
              +++++ + L
Sbjct: 685 EFSSFRMLAEGL 696



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 123/272 (45%), Gaps = 18/272 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V A G+ +K L     +M+ RG    V T  +  LIK L     V  A+     M     
Sbjct: 169 VLAEGSRMKLLESVYNEMTDRGIQPDVVT--LNTLIKALCRAHQVRTAVLMLEEMSSHAV 226

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD   +  ++      G+   A  +  +M   G  C P   T  +LI+ YCK G     
Sbjct: 227 APDETTFTTLMQGFIEEGSIEAALRVKTKMMETG--CSPTRVTVNVLINGYCKMG----- 279

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+ +A    +  +  GF PD V YN  +   C+   +  AL++ D M ++G  P
Sbjct: 280 ------RVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDP 333

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARD 379
           +  TYN+ I   S   E+D+A  ++ +M  ++ G +P ++++  +I ALC   R+ EA D
Sbjct: 334 DVFTYNTVINCLSKNGELDEAKGIVNQM--VDRGCLPDTTTFNTLIVALCSQNRLEEALD 391

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
              EL   G  P  YT+ ++ +AL    +P L
Sbjct: 392 LARELTVKGLSPDVYTFNILINALCKVGDPHL 423



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 117/260 (45%), Gaps = 16/260 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R + V+     L++MS        TT   T L++   EEG +  AL    +M +  C P 
Sbjct: 207 RAHQVRTAVLMLEEMSSHAVAPDETT--FTTLMQGFIEEGSIEAALRVKTKMMETGCSPT 264

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
               NV+IN  C++G    A   +++    GF   PD  TY   +   C+ G        
Sbjct: 265 RVTVNVLINGYCKMGRVEDALGYIQKEIADGFE--PDQVTYNTFVHCLCQNG-------- 314

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               +  A  +  LML +G  PDV  YN +I+   K   ++ A  + + M  +GC+P+  
Sbjct: 315 ---HVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTT 371

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           T+N+ I      N +++A+++ R++  +    P   ++  +I+ALC+ G          E
Sbjct: 372 TFNTLIVALCSQNRLEEALDLAREL-TVKGLSPDVYTFNILINALCKVGDPHLGIRLFEE 430

Query: 384 LVDGGSVPREYTYKLVCDAL 403
           +   G  P E TY ++ D L
Sbjct: 431 MKSSGCAPDEVTYNILIDHL 450


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 159/339 (46%), Gaps = 54/339 (15%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V  +  N++     +++M  RG    +   + T LI    ++G +++AL     M+Q R 
Sbjct: 306 VMCKAGNLERAVGLVREMRERG--LQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRI 363

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----- 255
           +P V  YN +IN  C VG  ++AR L+ +ME  G +  PDV TY+ ++S+YCK G     
Sbjct: 364 QPSVVCYNALINGYCMVGRMDEARELVREMEAKGVK--PDVVTYSTILSAYCKNGDTHSA 421

Query: 256 -------MQTGC-------RKAIR-----RRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                  ++ G           IR     +R+ +A+ LF+ M+  G  PD V Y  LIDG
Sbjct: 422 FQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDG 481

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            CK   +ERAL L D+M K G +P+ VTY+  I   S      +A  ++ K+ +    VP
Sbjct: 482 HCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYH-EEPVP 540

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE--PSLLDD 414
            +  Y     AL    R  E +  LA L       + +  K     +N A++   S+LD 
Sbjct: 541 ANIKY----DALMRCCRNAELKSVLALL-------KGFCMK---GLMNEADKVYQSILD- 585

Query: 415 GLRKRIRDGIEYRF------RQVMKVKPIMKHKELLKCG 447
             R    DG  Y        R+   +K +  HK++L+CG
Sbjct: 586 --RNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCG 622



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 111/216 (51%), Gaps = 19/216 (8%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+VY YN+++ ALC  G+  +A  +L  M   G  C P+  TY  L++++C+ G      
Sbjct: 155 PNVYTYNILVRALCGRGHRKEALSVLRDMR--GAGCDPNAVTYNTLVAAFCRAG------ 206

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 +  A  L  +M   G  P++V +N +++G CK  R+E A ++FD+M K+G  P+
Sbjct: 207 -----EVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPD 261

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            V+YN+ +  Y  V    +A+ +  +M     G+ P   ++T +IH +C+AG +  A   
Sbjct: 262 GVSYNTLVGGYCKVGCSHEALSVFAEMT--RKGIMPDVVTFTSLIHVMCKAGNLERAVGL 319

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
           + E+ + G    E T+  + D      +   LDD L
Sbjct: 320 VREMRERGLQMNEITFTALIDGFC---KKGFLDDAL 352



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 47/262 (17%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L++ L   G   EAL+    M+   C P+   YN ++ A CR G  ++A  L++ M   G
Sbjct: 163 LVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGG 222

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P++ T+  +++  CK G           R+ +A  +F  M+ +G  PD V+YN L+
Sbjct: 223 LK--PNLVTFNSVVNGICKAG-----------RMEDARKVFDEMVKEGLAPDGVSYNTLV 269

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN---- 350
            G CK      AL +F +M +KG +P+ VT+ S I        +++A+ ++R+M+     
Sbjct: 270 GGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQ 329

Query: 351 ------------------LNHGV------------PTSSSYTPIIHALCEAGRVLEARDF 380
                             L+  +            P+   Y  +I+  C  GR+ EAR+ 
Sbjct: 330 MNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEAREL 389

Query: 381 LAELVDGGSVPREYTYKLVCDA 402
           + E+   G  P   TY  +  A
Sbjct: 390 VREMEAKGVKPDVVTYSTILSA 411



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 9/131 (6%)

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            A   F  ML  G  P+V  YN L+   C     + AL +  DM   GC PN VTYN+ +
Sbjct: 140 SARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLV 199

Query: 330 RYYSVVNEIDKA---IEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV 385
             +    E+D+A   ++MMR+      G+ P   ++  +++ +C+AGR+ +AR    E+V
Sbjct: 200 AAFCRAGEVDRAERLVDMMRE-----GGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMV 254

Query: 386 DGGSVPREYTY 396
             G  P   +Y
Sbjct: 255 KEGLAPDGVSY 265



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 91/225 (40%), Gaps = 44/225 (19%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG L    + + LI+VL EE  + +A   F  M     +PD   Y  +I+  C+ GN  +
Sbjct: 431 NGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVER 490

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG--------------------------M 256
           A  L ++M   G    PDV TY++LI+   K                            +
Sbjct: 491 ALSLHDEMVKAGVL--PDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDAL 548

Query: 257 QTGCRKAIRRRIW-------------EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
              CR A  + +              EA+ +++ +L + +  D   Y+ LI G C+   +
Sbjct: 549 MRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNV 608

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYY---SVVNEIDKAIEMM 345
            +AL     M + G  PN  +  S IR      +V E D+ I+ +
Sbjct: 609 MKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQL 653



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 30/211 (14%)

Query: 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           GL+K+          F  +H E              N+K  +D L    R  N EL    
Sbjct: 516 GLSKSARTKEAQRLLFKLYHEEPV----------PANIK--YDALMRCCR--NAEL---K 558

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           SV  L+K    +GL+NEA   +  +       D   Y+V+I+  CR GN  KA    +QM
Sbjct: 559 SVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQM 618

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              GF   P+  +   LI    + GM           + EA+ + + +L    + D  A 
Sbjct: 619 LQCGF--APNSTSTISLIRGLFEKGM-----------VVEADQVIQQLLNCCSLADAEAS 665

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             LID   K   ++  L++   M + G +P+
Sbjct: 666 KALIDLNLKEGNVDAVLDVLHGMARDGLLPS 696


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 149/323 (46%), Gaps = 31/323 (9%)

Query: 112 LNKATE-FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           +++A E  +H V R  D   N +T   +     + N+V+   +  + ++ +G   L    
Sbjct: 353 IDEAVEILHHMVSR--DCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGV--LPDVC 408

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +   LI+ L        A+  F  MK+  C PD + Y+++I +LC      +A  LL++M
Sbjct: 409 TFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEM 468

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           EL G  C  +V  Y  LI   CK             R+ +A  +F  M   G     V Y
Sbjct: 469 ELSG--CARNVVVYNTLIDGLCK-----------NNRVGDAEDIFDQMEMLGVSRSSVTY 515

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI+G CK+ R+E A +L D M  +G  P++ TY + ++Y+    +I +A ++++ M  
Sbjct: 516 NTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNM-T 574

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
           LN   P   +Y  +I  LC+AGRV  A   L  +   G V     Y  V  AL       
Sbjct: 575 LNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCK----- 629

Query: 411 LLDDGLRKRIRDGIEYRFRQVMK 433
                 RKR ++ +   FR++M+
Sbjct: 630 ------RKRTKEAMRL-FREMME 645



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 131/286 (45%), Gaps = 39/286 (13%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           +T+ SV  L+  L +EG + EAL   Y  + F C PD   +N ++N LCR G+  +   +
Sbjct: 267 LTSVSVNVLVNGLCKEGRIEEALRFIYEEEGF-C-PDQVTFNALVNGLCRTGHIKQGLEM 324

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG---------------------------MQTG 259
           ++ M   GF    DVYTY  LIS  CK G                           + T 
Sbjct: 325 MDFMLEKGFEL--DVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTL 382

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           C++     +  A  L R++  KG +PDV  +N LI G C T   E A+ELF++M +KGC 
Sbjct: 383 CKE---NHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCD 439

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+  TY+  I        + +A+ ++++M+ L+        Y  +I  LC+  RV +A D
Sbjct: 440 PDEFTYSILIESLCSERRLKEALMLLKEME-LSGCARNVVVYNTLIDGLCKNNRVGDAED 498

Query: 380 FLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRIR 421
              ++   G      TY      +C +    E   L+D  + + ++
Sbjct: 499 IFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLK 544



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 20/235 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQ 229
           + T L++   EE  V  AL     M +  C     + NV++N LC+ G   +A RF+ E+
Sbjct: 236 TFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEE 295

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
               GF C PD  T+  L++  C+ G            I +   +   ML KGF  DV  
Sbjct: 296 ---EGF-C-PDQVTFNALVNGLCRTG-----------HIKQGLEMMDFMLEKGFELDVYT 339

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN LI G CK   I+ A+E+   M  + C PN VTYN+ I      N ++ A E+ R + 
Sbjct: 340 YNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLT 399

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             + GV P   ++  +I  LC       A +   E+ + G  P E+TY ++ ++L
Sbjct: 400 --SKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESL 452



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 29/226 (12%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------ 255
           PDV  +N++I ALC+      A  +LE M  P +   PD  T+T L+  + +        
Sbjct: 197 PDVSTFNILIRALCKAHQLRPAILMLEDM--PNYGLRPDEKTFTTLMQGFIEEADVEGAL 254

Query: 256 ------MQTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                 +++GC                  RI EA  L  +   +GF PD V +N L++G 
Sbjct: 255 RIKELMVESGCELTSVSVNVLVNGLCKEGRIEEA--LRFIYEEEGFCPDQVTFNALVNGL 312

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C+T  I++ LE+ D M +KG   +  TYNS I     + EID+A+E++  M + +   P 
Sbjct: 313 CRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRD-CEPN 371

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + +Y  +I  LC+   V  A +    L   G +P   T+  +   L
Sbjct: 372 TVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGL 417



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 108/253 (42%), Gaps = 35/253 (13%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
             + N V    D    M   G    V+ SSVT   LI  L +   V EA     +M    
Sbjct: 487 LCKNNRVGDAEDIFDQMEMLG----VSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEG 542

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
            +PD + Y  ++   C+ G+  +A  +++ M L G  C PD+ TY  LI   CK G    
Sbjct: 543 LKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNG--CEPDIVTYGTLIGGLCKAG---- 596

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  R+  A+ L R +  KG V    AYN +I   CK  R + A+ LF +M +KG  
Sbjct: 597 -------RVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDP 649

Query: 320 PNRVTYNSFIRYY-----SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGR 373
           P+ +TY    R        +   +D  +EM+ K      G+ P   S+  +   LC    
Sbjct: 650 PDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEK------GILPEFPSFGFLAEGLCS--- 700

Query: 374 VLEARDFLAELVD 386
            L   D L +L++
Sbjct: 701 -LSMEDTLIQLIN 712



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 31/233 (13%)

Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-- 253
           + F  +PD   YNV ++ L +         L  +M       PPDV T+ ILI + CK  
Sbjct: 156 RDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAV--PPDVSTFNILIRALCKAH 213

Query: 254 --------------YGMQTGCR---KAIRRRIWEAN-----HLFRLMLFKGFVPDVVAYN 291
                         YG++   +     ++  I EA+      +  LM+  G     V+ N
Sbjct: 214 QLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVN 273

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L++G CK  RIE AL       ++G  P++VT+N+ +        I + +EMM  M  L
Sbjct: 274 VLVNGLCKEGRIEEALRFI--YEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFM--L 329

Query: 352 NHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             G      +Y  +I  LC+ G + EA + L  +V     P   TY  +   L
Sbjct: 330 EKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTL 382



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 22/204 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEA--LATFYRMKQF 198
           F +  ++K   D +++M+  G   ++VT  +   LI  L + G V+ A  L    +MK  
Sbjct: 557 FCQQGDIKRAADIVQNMTLNGCEPDIVTYGT---LIGGLCKAGRVDVASKLLRSVQMKGM 613

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
              P   AYN VI ALC+     +A  L  +M   G   PPDV TY I+    C  G   
Sbjct: 614 VLTPQ--AYNPVIQALCKRKRTKEAMRLFREMMEKGD--PPDVITYKIVFRGLCNGG--- 666

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                    I EA      ML KG +P+  ++  L +G C     +  ++L + + +KG 
Sbjct: 667 -------GPIQEAVDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKGR 719

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAI 342
                T  S IR +  + + + A+
Sbjct: 720 FSQSET--SIIRGFLKIQKFNDAL 741



 Score = 45.1 bits (105), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 76/193 (39%), Gaps = 18/193 (9%)

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
           +   P V+  + ++  L R G+F+    LL QM     + P D  T+ I + +Y      
Sbjct: 88  YSAHPSVF--HELLRQLARAGSFDSMLTLLRQMH--SSKIPVDESTFLIFLETYATS--- 140

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFV-PDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                       E N LF LM     V PD   YN  +    K  +++    L   M   
Sbjct: 141 -------HHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVAD 193

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVL 375
              P+  T+N  IR     +++  AI M+  M   N+G+ P   ++T ++    E   V 
Sbjct: 194 AVPPDVSTFNILIRALCKAHQLRPAILMLEDMP--NYGLRPDEKTFTTLMQGFIEEADVE 251

Query: 376 EARDFLAELVDGG 388
            A      +V+ G
Sbjct: 252 GALRIKELMVESG 264


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 104/201 (51%), Gaps = 14/201 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           RPD   YN +++A  R  N + A  + E ME    RC PD++TY  +IS Y + G+    
Sbjct: 294 RPDAITYNTLLSACSRDSNLDGAVKVFEDME--AHRCQPDLWTYNAMISVYGRCGLAA-- 349

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                    EA  LF  +  KGF PD V YN L+    +    E+  E++  M K G   
Sbjct: 350 ---------EAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGK 400

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + +TYN+ I  Y    ++D A+++ + M+ L+   P + +YT +I +L +A R +EA   
Sbjct: 401 DEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAAL 460

Query: 381 LAELVDGGSVPREYTYK-LVC 400
           ++E++D G  P   TY  L+C
Sbjct: 461 MSEMLDVGIKPTLQTYSALIC 481



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 17/251 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+     +  ++ A+  F  M+  RC+PD++ YN +I+   R G   +A  L  ++EL G
Sbjct: 303 LLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKG 362

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F   PD  TY  L+ ++ +            R   +   +++ M   GF  D + YN +I
Sbjct: 363 FF--PDAVTYNSLLYAFAR-----------ERNTEKVKEVYQQMQKMGFGKDEMTYNTII 409

Query: 295 DGCCKTYRIERALELFDDMNK-KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
               K  +++ AL+L+ DM    G  P+ +TY   I      N   +A  +M +M  L+ 
Sbjct: 410 HMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEM--LDV 467

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
           G+ PT  +Y+ +I    +AG+  EA D  + ++  G+ P    Y ++ D L    E    
Sbjct: 468 GIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKA 527

Query: 413 DDGLRKRIRDG 423
               R  I DG
Sbjct: 528 WGLYRDMISDG 538



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 16/225 (7%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
           FF + +T   +   FAR  N + + +  + M + G G+   T +   +I + G++G ++ 
Sbjct: 363 FFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNT--IIHMYGKQGQLDL 420

Query: 188 ALATFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           AL  +  MK    R PD   Y V+I++L +     +A  L+ +M   G +  P + TY+ 
Sbjct: 421 ALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIK--PTLQTYSA 478

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI  Y K G +            EA   F  ML  G  PD +AY+ ++D   +     +A
Sbjct: 479 LICGYAKAGKRE-----------EAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKA 527

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
             L+ DM   G  P+   Y   I      N  D   + +R M+ L
Sbjct: 528 WGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEEL 572



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 13/228 (5%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           V  ++ VLG     + A+  F R +       V  YN ++    R G F+KA+ L++ M 
Sbjct: 194 VAAILGVLGRWNQESLAVEIFTRAEP-TVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMR 252

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G  C PD+ ++  LI++  K G  T            A  L  ++   G  PD + YN
Sbjct: 253 QRG--CVPDLISFNTLINARLKSGGLTPNL---------AVELLDMVRNSGLRPDAITYN 301

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L+  C +   ++ A+++F+DM    C P+  TYN+ I  Y       +A  +  +++ L
Sbjct: 302 TLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELE-L 360

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
               P + +Y  +++A        + ++   ++   G    E TY  +
Sbjct: 361 KGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTI 408



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 114/265 (43%), Gaps = 22/265 (8%)

Query: 161  RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
            R +G      +   L+    + G    A A F  M +    P V + N++++ALC  G  
Sbjct: 779  RQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRL 838

Query: 221  NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
             +   ++E+++  GF+      +  +++ ++ + G            I+E   ++  M  
Sbjct: 839  EELYVVVEELQDMGFKISKS--SILLMLDAFARAG-----------NIFEVKKIYSSMKA 885

Query: 281  KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
             G++P +  Y  +I+  CK  R+  A  +  +M +         +NS ++ Y+ + +  K
Sbjct: 886  AGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKK 945

Query: 341  AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
             +++ ++++      P  ++Y  +I   C   R  E    + ++ + G  P+  TYK + 
Sbjct: 946  TVQVYQRIKETGLE-PDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLI 1004

Query: 401  DA------LNAAEE--PSLLDDGLR 417
             A      L  AE+    LL  GL+
Sbjct: 1005 SAFGKQKCLEQAEQLFEELLSKGLK 1029



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 106/282 (37%), Gaps = 52/282 (18%)

Query: 155  LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
            L+DM     G  ++ SS+  ++      G + E    +  MK     P +  Y ++I  L
Sbjct: 848  LQDM-----GFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELL 902

Query: 215  CRVGNFNKARFLLEQMELPGFRCP---------------------------------PDV 241
            C+      A  ++ +ME   F+                                   PD 
Sbjct: 903  CKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDE 962

Query: 242  YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
             TY  LI  YC+            RR  E   L + M   G  P +  Y  LI    K  
Sbjct: 963  TTYNTLIIMYCR-----------DRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQK 1011

Query: 302  RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
             +E+A +LF+++  KG   +R  Y++ ++         KA ++++ M+  N G+ PT ++
Sbjct: 1012 CLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMK--NAGIEPTLAT 1069

Query: 361  YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
               ++ +   +G   EA   L+ L D         Y  V DA
Sbjct: 1070 MHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDA 1111


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 116/237 (48%), Gaps = 16/237 (6%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M  RG    V T S   L+     EG V+ A+  F RM    C P++ +YN++I  LCR 
Sbjct: 420 MEERGCVATVVTYSA--LMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRA 477

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G   KA F  E+  L   R  PDVYT+   +   C+     G          +   LF  
Sbjct: 478 GKLAKAYFYFEK--LLQRRLCPDVYTFNSFLHGLCQRLDTVG----------DGVELFES 525

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+ +G  P++ +Y+ L+DG C+   +E  LE+F +M  +G  P+ V +N+ IR+  +   
Sbjct: 526 MVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGR 585

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
           +D+A+E+ R+++      P + SY  ++ AL    R+ EAR     +   G  PR Y
Sbjct: 586 VDEALEVFRELE--RRSAPDAWSYWSLLDALSRCERMEEARLLSFHMKLQGCAPRHY 640



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 17/201 (8%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D      ++N LC+ G  ++A  LL++M      C PD+  +T++I+  C+         
Sbjct: 8   DTRVCTALLNGLCKTGQLDRAMLLLDEMP-----CSPDMVAFTVVINGLCR--------- 53

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
              +R+ EA  +    +  G  PD V YN  IDG CK  R++ A +L   M++K C+P  
Sbjct: 54  --EKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTT 111

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           VTY + +        +D+A+ ++ +M    +  PT  +YT +I  L +AGRV EAR    
Sbjct: 112 VTYTALVDGLLKAGRLDEAMAILEQMVEKGNS-PTLKTYTVVIDGLSKAGRVEEARRIFV 170

Query: 383 ELVDGGSVPREYTYKLVCDAL 403
           +++  G  P  + Y  +   L
Sbjct: 171 DMLGNGCRPDAFVYTALISGL 191



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 118/247 (47%), Gaps = 29/247 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L +     EA+A   +M + RC P ++ Y  +++   ++G  ++A   L++    G
Sbjct: 260 LVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERG 319

Query: 235 FRCPPDVYTYTILISSYCKYG-MQTGCRK--AIRRRIWE--------------------- 270
           F   PD  TYT +I   CK G ++ GC +   +R R +E                     
Sbjct: 320 F--IPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPK 377

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A+ ++R ML  G V   V YN ++DG CK  R+  A   F  M ++GC+   VTY++ + 
Sbjct: 378 AHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMD 437

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
            +     +  A+E+ R+M  L+ G  P   SY  II  LC AG++ +A  +  +L+    
Sbjct: 438 GFCSEGNVSAAVELFRRM--LDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRL 495

Query: 390 VPREYTY 396
            P  YT+
Sbjct: 496 CPDVYTF 502



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 127/301 (42%), Gaps = 50/301 (16%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC----RPDVYAYNVVINALCRV 217
           GNG        T LI  L + G ++EAL    +M +  C     PDV  +N+VI  LC  
Sbjct: 174 GNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCAS 233

Query: 218 GNFNKARFLLEQME----LPGF----------------------------RCPPDVYTYT 245
           GN   A    ++++    L  F                            RC P ++TYT
Sbjct: 234 GNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYT 293

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            L+  + K G           R+ EA    +  + +GF+PD V Y  +IDG CK  R+E 
Sbjct: 294 SLVDGFLKLG-----------RLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEE 342

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPI 364
             E F +M  +G  P+ VTY + I  +     I KA  + R+M  L  G   S+ +Y  I
Sbjct: 343 GCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQM--LQSGTVVSTVTYNII 400

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           +  LC+AGRV EA      + + G V    TY  + D   +    S   +  R+ +  G 
Sbjct: 401 LDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGC 460

Query: 425 E 425
           E
Sbjct: 461 E 461



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 130/294 (44%), Gaps = 34/294 (11%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +   V   +  LK M  +    L TT + T L+  L + G ++EA+A   +M +    
Sbjct: 86  LCKAERVDDAFQLLKKMDEKKC--LPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNS 143

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------ 255
           P +  Y VVI+ L + G   +AR +   +++ G  C PD + YT LIS   K G      
Sbjct: 144 PTLKTYTVVIDGLSKAGRVEEARRIF--VDMLGNGCRPDAFVYTALISGLAKIGKLDEAL 201

Query: 256 ------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY---------------NCLI 294
                 ++ GC + +   +   N + R +   G + D +AY               N L+
Sbjct: 202 VYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLV 261

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              CK  R E A+     M+++ C P   TY S +  +  +  +D+A+  ++  + +  G
Sbjct: 262 AALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLK--EAVERG 319

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
            +P + +YT II  LC+ GRV E  +   E+ + G  P   TY  + D    A+
Sbjct: 320 FIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAK 373



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 17/240 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T +I  L  E  ++EA +   R  +  C PD   YNV I+ LC+    + A  LL++M
Sbjct: 43  AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKM 102

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +    +C P   TYT L+    K G           R+ EA  +   M+ KG  P +  Y
Sbjct: 103 DEK--KCLPTTVTYTALVDGLLKAG-----------RLDEAMAILEQMVEKGNSPTLKTY 149

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-- 348
             +IDG  K  R+E A  +F DM   GC P+   Y + I   + + ++D+A+  + +M  
Sbjct: 150 TVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVE 209

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
                GV P    +  +I  LC +G + +A  +  EL D   +   +T+  +  AL  AE
Sbjct: 210 NGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLT-HFTFNPLVAALCKAE 268



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 17/224 (7%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +LV T   T L+  L + G ++ A+     M    C PD+ A+ VVIN LCR    ++A 
Sbjct: 5   KLVDTRVCTALLNGLCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDEAF 61

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            +LE+    G  C PD  TY + I   CK             R+ +A  L + M  K  +
Sbjct: 62  SVLERAVRAG--CEPDYVTYNVFIDGLCK-----------AERVDDAFQLLKKMDEKKCL 108

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P  V Y  L+DG  K  R++ A+ + + M +KG  P   TY   I   S    +++A  +
Sbjct: 109 PTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRI 168

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              M   N   P +  YT +I  L + G++ EA  +L ++V+ G
Sbjct: 169 FVDMLG-NGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENG 211


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 104/201 (51%), Gaps = 14/201 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           RPD   YN +++A  R  N + A  + E ME    RC PD++TY  +IS Y + G+    
Sbjct: 294 RPDAITYNTLLSACSRDSNLDGAVKVFEDME--AHRCQPDLWTYNAMISVYGRCGLAA-- 349

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                    EA  LF  +  KGF PD V YN L+    +    E+  E++  M K G   
Sbjct: 350 ---------EAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGK 400

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + +TYN+ I  Y    ++D A+++ + M+ L+   P + +YT +I +L +A R +EA   
Sbjct: 401 DEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAAL 460

Query: 381 LAELVDGGSVPREYTYK-LVC 400
           ++E++D G  P   TY  L+C
Sbjct: 461 MSEMLDVGIKPTLQTYSALIC 481



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 17/251 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+     +  ++ A+  F  M+  RC+PD++ YN +I+   R G   +A  L  ++EL G
Sbjct: 303 LLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKG 362

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F   PD  TY  L+ ++ +            R   +   +++ M   GF  D + YN +I
Sbjct: 363 FF--PDAVTYNSLLYAFAR-----------ERNTEKVKEVYQQMQKMGFGKDEMTYNTII 409

Query: 295 DGCCKTYRIERALELFDDMNK-KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
               K  +++ AL+L+ DM    G  P+ +TY   I      N   +A  +M +M  L+ 
Sbjct: 410 HMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEM--LDV 467

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
           G+ PT  +Y+ +I    +AG+  EA D  + ++  G+ P    Y ++ D L    E    
Sbjct: 468 GIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKA 527

Query: 413 DDGLRKRIRDG 423
               R  I DG
Sbjct: 528 WGLYRDMISDG 538



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 16/225 (7%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
           FF + +T   +   FAR  N + + +  + M + G G+   T     +I + G++G ++ 
Sbjct: 363 FFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMT--YNTIIHMYGKQGQLDL 420

Query: 188 ALATFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           AL  +  MK    R PD   Y V+I++L +     +A  L+ +M   G +  P + TY+ 
Sbjct: 421 ALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIK--PTLQTYSA 478

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI  Y K G +            EA   F  ML  G  PD +AY+ ++D   +     +A
Sbjct: 479 LICGYAKAGKRE-----------EAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKA 527

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
             L+ DM   G  P+   Y   I      N  D   + +R M+ L
Sbjct: 528 WGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEEL 572



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 13/228 (5%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           V  ++ VLG     + A+  F R +       V  YN ++    R G F+KA+ L++ M 
Sbjct: 194 VAAILGVLGRWNQESLAVEIFTRAEP-TVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMR 252

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G  C PD+ ++  LI++  K G  T            A  L  ++   G  PD + YN
Sbjct: 253 QRG--CVPDLISFNTLINARLKSGGLTPNL---------AVELLDMVRNSGLRPDAITYN 301

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L+  C +   ++ A+++F+DM    C P+  TYN+ I  Y       +A  +  +++ L
Sbjct: 302 TLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELE-L 360

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
               P + +Y  +++A        + ++   ++   G    E TY  +
Sbjct: 361 KGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTI 408



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 114/265 (43%), Gaps = 22/265 (8%)

Query: 161  RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
            R +G      +   L+    + G    A A F  M +    P V + N++++ALC  G  
Sbjct: 779  RQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRL 838

Query: 221  NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
             +   ++E+++  GF+      +  +++ ++ + G            I+E   ++  M  
Sbjct: 839  EELYVVVEELQDMGFKISKS--SILLMLDAFARAG-----------NIFEVKKIYSSMKA 885

Query: 281  KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
             G++P +  Y  +I+  CK  R+  A  +  +M +         +NS ++ Y+ + +  K
Sbjct: 886  AGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKK 945

Query: 341  AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
             +++ ++++      P  ++Y  +I   C   R  E    + ++ + G  P+  TYK + 
Sbjct: 946  TVQVYQRIKETGLE-PDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLI 1004

Query: 401  DA------LNAAEE--PSLLDDGLR 417
             A      L  AE+    LL  GL+
Sbjct: 1005 SAFGKQKCLEQAEQLFEELLSKGLK 1029



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 106/282 (37%), Gaps = 52/282 (18%)

Query: 155  LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
            L+DM     G  ++ SS+  ++      G + E    +  MK     P +  Y ++I  L
Sbjct: 848  LQDM-----GFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELL 902

Query: 215  CRVGNFNKARFLLEQMELPGFRCP---------------------------------PDV 241
            C+      A  ++ +ME   F+                                   PD 
Sbjct: 903  CKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDE 962

Query: 242  YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
             TY  LI  YC+            RR  E   L + M   G  P +  Y  LI    K  
Sbjct: 963  TTYNTLIIMYCR-----------DRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQK 1011

Query: 302  RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
             +E+A +LF+++  KG   +R  Y++ ++         KA ++++ M+  N G+ PT ++
Sbjct: 1012 CLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMK--NAGIEPTLAT 1069

Query: 361  YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
               ++ +   +G   EA   L+ L D         Y  V DA
Sbjct: 1070 MHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDA 1111


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 111/235 (47%), Gaps = 14/235 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  S   +I  +   G ++ A     RM +    PDVY Y  +I  LCRVG    AR + 
Sbjct: 150 TVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVF 209

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           E+M   G +  P+   +TILI ++CK G                  L R M  +G  PD 
Sbjct: 210 EKMCGRGMK--PNAVVFTILIDAHCKKG-----------DAETMLELHREMRERGVRPDA 256

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V YN +++G C+   ++ A  +  +M   G  P+ VTY + I  Y    E+D A+E+ + 
Sbjct: 257 VTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQN 316

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           M     G+    +YT +I  L +AGR  +A   L E+++ G  P   TY +V DA
Sbjct: 317 MVAEGVGL-DEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDA 370



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 14/230 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    ++G     L     M++   RPD   YN ++N LCR  +   A  ++ +M  
Sbjct: 225 TILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRS 284

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G R  PD  TYT LI  YCK              +  A  + + M+ +G   D V Y  
Sbjct: 285 AGLR--PDTVTYTTLIDGYCK-----------EEELDMAMEIKQNMVAEGVGLDEVTYTA 331

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI G  K  R   A  +  +M + G  P+  TY   I  +    ++   + ++++MQN  
Sbjct: 332 LISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKG 391

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              P   +Y  I++  C+ G++  A   L  +++ G  P + TY ++ D 
Sbjct: 392 RK-PGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDG 440



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 103/223 (46%), Gaps = 16/223 (7%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EA A + ++      P+   +NV++  L R+G    A+ + ++M+  G R    V ++  
Sbjct: 99  EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVR--RTVVSFNT 156

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           +IS  C+ G   G  + + RR+ EA          G  PDV  Y  LI G C+  RIE A
Sbjct: 157 MISGMCRAGDLDGA-ETLHRRMSEA----------GVTPDVYTYGALIQGLCRVGRIEDA 205

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
             +F+ M  +G  PN V +   I  +    + +  +E+ R+M+    GV P + +Y  I+
Sbjct: 206 RGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRE--RGVRPDAVTYNAIV 263

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           + LC A  +  A   + E+   G  P   TY  + D     EE
Sbjct: 264 NGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEE 306



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI  L + G   +A      M +    PD   Y +VI+A CR G+      LL++M+ 
Sbjct: 330 TALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQN 389

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  P V TY ++++ +CK G           ++  A+ L   M+  G  PD + YN 
Sbjct: 390 KGRK--PGVVTYNVIMNGFCKLG-----------QMKNADMLLNAMINIGVSPDDITYNI 436

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           L+DG CK  ++    EL    + KG +P+   Y S +
Sbjct: 437 LLDGHCKHGKVTDIEEL---KSAKGTVPDLGVYTSIV 470


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 145/317 (45%), Gaps = 42/317 (13%)

Query: 170 SSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           S+++C  L+  L +E    +    +  M + + +P+V+ +NVVINALC+ G  NKAR ++
Sbjct: 187 SALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVM 246

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA---------------------IRR 266
           E M++ G  C P+V +Y  LI  YCK G      KA                     +  
Sbjct: 247 EDMKVYG--CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILID 304

Query: 267 RIWEANHL------FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
             W+ ++L      F+ ML +   P+V++YN LI+G C   +I  A+ + D M   G  P
Sbjct: 305 GFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQP 364

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N +TYN+ I  +   + + +A++M   ++     VPT+  Y  +I A C+ G++ +    
Sbjct: 365 NLITYNALINGFCKNDMLKEALDMFGSVKG-QGAVPTTRMYNMLIDAYCKLGKIDDGFAL 423

Query: 381 LAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRKRIRDGIEYRF------RQ 430
             E+   G VP   TY  +   L    N      L D    K + D + +        R+
Sbjct: 424 KEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRK 483

Query: 431 VMKVKPIMKHKELLKCG 447
               K  M  KE+ K G
Sbjct: 484 GESRKAAMLLKEMSKMG 500



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 14/227 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             LI    +  ++ EAL  F  +K     P    YN++I+A C++G  +    L E+ME 
Sbjct: 370 NALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMER 429

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PDV TY  LI+  C+ G            I  A  LF  +  KG +PD+V ++ 
Sbjct: 430 EGI--VPDVGTYNCLIAGLCRNG-----------NIEAAKKLFDQLTSKG-LPDLVTFHI 475

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L++G C+     +A  L  +M+K G  P  +TYN  ++ Y     +  A  M  +M+   
Sbjct: 476 LMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKER 535

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
                 +SY  ++    + G++ +A   L E+++ G VP   TY++V
Sbjct: 536 RLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 137/305 (44%), Gaps = 64/305 (20%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L+  L  EG V EA+A   RM +   +P+   Y  +++ +C++G+   A  LL +M
Sbjct: 181 TFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKM 240

Query: 231 E--------------------LPGF--------------------RCPPDVYTYTILISS 250
           E                    + GF                    +  PDV TY  LI++
Sbjct: 241 EEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINA 300

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           + K G           + +EA  L+  ML +G +P  + Y+ +IDG CK  R++ A  +F
Sbjct: 301 FVKEG-----------KFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMF 349

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
             M  KGC P+ +T+N+ I  Y     +D  I+++ +M      V  + +YT +IH  C+
Sbjct: 350 YLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGL-VANTITYTTLIHGFCQ 408

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQ 430
            G +  A+D L E+V  G  P   T   + D         L D+G   +++D +E  F+ 
Sbjct: 409 VGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDG--------LCDNG---KLKDALEM-FKA 456

Query: 431 VMKVK 435
           + K K
Sbjct: 457 MQKSK 461



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 114/276 (41%), Gaps = 23/276 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + R   V      L +M+  G   +  T + T LI    + G +N A      M      
Sbjct: 371 YCRAKRVDDGIKLLHEMTEAG--LVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVC 428

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQME---------LPGFRCPPDVYTYTILISSYC 252
           P+V   N +++ LC  G    A  + + M+          P     PDV TY ILIS   
Sbjct: 429 PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLI 488

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
             G           +  EA  L+  M  +G VPD + YN +I G CK  R++ A ++FD 
Sbjct: 489 NEG-----------KFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDS 537

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           M  K   PN VT+ + I  Y     +D  +E+  +M      V  + +Y  +IH   + G
Sbjct: 538 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGI-VANAITYITLIHGFRKVG 596

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            +  A D   E++  G  P   T + +   L + EE
Sbjct: 597 NINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEE 632



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 113/268 (42%), Gaps = 38/268 (14%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + +T + + +I    ++  ++ A   FY M    C PD+  +N +I   CR    +  
Sbjct: 321 GIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDG 380

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR----------------- 266
             LL +M   G     +  TYT LI  +C+ G     +  ++                  
Sbjct: 381 IKLLHEMTEAGL--VANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLL 438

Query: 267 -------RIWEANHLFRLML-----------FKGFVPDVVAYNCLIDGCCKTYRIERALE 308
                  ++ +A  +F+ M            F G  PDV  YN LI G     +   A E
Sbjct: 439 DGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEE 498

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           L+++M  +G +P+ +TYNS I      + +D+A +M   M + +   P   ++T +I+  
Sbjct: 499 LYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFS-PNVVTFTTLINGY 557

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTY 396
           C+AGRV +  +   E+   G V    TY
Sbjct: 558 CKAGRVDDGLELFCEMGRRGIVANAITY 585



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 107/266 (40%), Gaps = 37/266 (13%)

Query: 173 TCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           TC+I      G  +EA      M ++ +  PDV  YN +INA  + G F +A  L ++M 
Sbjct: 259 TCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEML 318

Query: 232 LPGFRCPPDVYTYTILISSYCK-----------YGMQT-GCRKAI------------RRR 267
             G    P   TY+ +I  +CK           Y M T GC   I             +R
Sbjct: 319 PRGI--IPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKR 376

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + +   L   M   G V + + Y  LI G C+   +  A +L  +M   G  PN VT N+
Sbjct: 377 VDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNT 436

Query: 328 FIRYYSVVNEIDKAIEMMRKMQN----------LNHGVPTSSSYTPIIHALCEAGRVLEA 377
            +       ++  A+EM + MQ            N   P   +Y  +I  L   G+ LEA
Sbjct: 437 LLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEA 496

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
            +   E+   G VP   TY  V   L
Sbjct: 497 EELYEEMPHRGIVPDTITYNSVIHGL 522



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 120/267 (44%), Gaps = 28/267 (10%)

Query: 146 NNVKGL---WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           + +KGL    D   DM R  +  L +      L+ V+   G ++  ++   +M+  R   
Sbjct: 54  HEIKGLEDAIDLFGDMVR--SRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPC 111

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           + Y++ +++   C       A     ++   GF   P V T++ L+   C          
Sbjct: 112 NAYSFTILMKCFCSCSKLPFALSTFGKITKLGFH--PTVVTFSTLLHGLC---------- 159

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
            +  RI EA  LF  M      P+VV +  L++G C+  R+  A+ L D M + G  PN+
Sbjct: 160 -VEDRISEALDLFHQMC----KPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQ 214

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY-----TPIIHALCEAGRVLEA 377
           +TY + +     + +   A+ ++RKM+ ++H  P    +     T +I+  C +GR  EA
Sbjct: 215 ITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEA 274

Query: 378 RDFLAELVDGGSV-PREYTYKLVCDAL 403
           +  L E+++   + P   TY  + +A 
Sbjct: 275 QQLLQEMLERKKISPDVVTYNALINAF 301



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 13/193 (6%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           D S   NG      +   LI  L  EG   EA   +  M      PD   YN VI+ LC+
Sbjct: 465 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCK 524

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
               ++A  + + M    F   P+V T+T LI+ YCK G           R+ +   LF 
Sbjct: 525 QSRLDEATQMFDSMGSKSF--SPNVVTFTTLINGYCKAG-----------RVDDGLELFC 571

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M  +G V + + Y  LI G  K   I  AL++F +M   G  P+ +T  + +       
Sbjct: 572 EMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKE 631

Query: 337 EIDKAIEMMRKMQ 349
           E+ +A+ M+  +Q
Sbjct: 632 ELKRAVAMLEDLQ 644


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 148/328 (45%), Gaps = 26/328 (7%)

Query: 82  ILKKEAYNIANNVLVLGPAAYRDPQKVTL-----GLNKATEFYHWVERFFDFFHNEMTCK 136
           + K+    +A+ +L   P+    P  V       GL  A  +    E   + F N+    
Sbjct: 305 VCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLD 364

Query: 137 EMGI-----VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           ++        F +   V  + + L+ M   G    V T   T +I    +EGL++EA+  
Sbjct: 365 DVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVIT--YTTVINGFCKEGLIDEAVML 422

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              M    CRP+  +Y +V+  LC    +  A  L+ QM   G  C P+  T+  +I+  
Sbjct: 423 LKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQG--CSPNPVTFNTVINFL 480

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK G+           + +A  L + ML  G  PD+++Y+ +IDG  K  + + ALEL +
Sbjct: 481 CKKGL-----------VEQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLN 529

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
            M  KG  PN + Y+S     S    I++ I+M   +Q++      +  Y  +I +LC+ 
Sbjct: 530 VMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIR-SDAVLYNAVISSLCKR 588

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLV 399
           G    A +FLA +V  G +P E TY ++
Sbjct: 589 GGTDRAIEFLAYMVSSGCMPNESTYTIL 616



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 128/304 (42%), Gaps = 49/304 (16%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINA 213
           L+D+  RG    V   ++  L  V  + G V+EAL     +   F C PDV +YN V+  
Sbjct: 176 LQDLHGRGCALDVGNCNLV-LNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKG 234

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC    + + + L+E+M   G  CPP+V T+  LI   C+ G+               + 
Sbjct: 235 LCMAKRWGRVQDLMEEMVRVG--CPPNVVTFNTLIGYLCRNGL-----------FERVHQ 281

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +   M+  G  PD+  Y  ++DG CK   +E A E+ D M   G  PN V YN+ ++   
Sbjct: 282 VLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLC 341

Query: 334 VVNEIDKAIEMMRKM---------------------------------QNLNHG-VPTSS 359
                ++A E++ +M                                 Q L HG VP   
Sbjct: 342 SAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVI 401

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
           +YT +I+  C+ G + EA   L  +   G  P   +Y +V   L +AE     +D + + 
Sbjct: 402 TYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQM 461

Query: 420 IRDG 423
           I  G
Sbjct: 462 IEQG 465



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 14/205 (6%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C  D   +N++++  C+ G   +   LLEQM   G  C PDV TYT +I+ +CK G+   
Sbjct: 361 CPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHG--CVPDVITYTTVINGFCKEGL--- 415

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   I EA  L + M   G  P+ ++Y  ++ G C   R   A +L   M ++GC 
Sbjct: 416 --------IDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCS 467

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN VT+N+ I +      +++AIE++++M  LN   P   SY+ +I  L +AG+  EA +
Sbjct: 468 PNPVTFNTVINFLCKKGLVEQAIELLKQML-LNGCSPDLISYSTVIDGLGKAGKTDEALE 526

Query: 380 FLAELVDGGSVPREYTYKLVCDALN 404
            L  +V+ G  P    Y  +  AL+
Sbjct: 527 LLNVMVNKGMSPNTIIYSSIASALS 551



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 19/238 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR---VGNFNKARFLLEQME 231
           +++ L   G + +AL+    M++  C P    Y+V++ A C     G F  A  +L+  +
Sbjct: 121 VVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQ--D 178

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR-LMLFKGFVPDVVAY 290
           L G  C  DV    +++++ C  G            + EA  L R L    G  PDVV+Y
Sbjct: 179 LHGRGCALDVGNCNLVLNAVCDQG----------GSVDEALRLLRDLPTSFGCDPDVVSY 228

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N ++ G C   R  R  +L ++M + GC PN VT+N+ I Y       ++  +++ +M  
Sbjct: 229 NAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQM-- 286

Query: 351 LNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           ++HG  P    Y  ++  +C+ G +  A + L  +   G  P    Y  V   L +AE
Sbjct: 287 VDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAE 344



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 35/226 (15%)

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----------- 255
           YN +++  CR G    AR L   + +     PP+ YTY  ++ + C  G           
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASVPV-----PPNAYTYFPVVRALCARGRIADALSVLDE 140

Query: 256 ----------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC- 298
                           ++  C +        A  + + +  +G   DV   N +++  C 
Sbjct: 141 MRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCD 200

Query: 299 KTYRIERALELFDDMNKK-GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           +   ++ AL L  D+    GC P+ V+YN+ ++   +     +  ++M +M  +    P 
Sbjct: 201 QGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCP-PN 259

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             ++  +I  LC  G        LA++VD G  P    Y  V D +
Sbjct: 260 VVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGV 305


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 137/285 (48%), Gaps = 33/285 (11%)

Query: 113 NKATEFYHWVERFFDFFHN-EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           N    F   ++R  + +++ E+  K +G+V A+G     L   + ++   G  +     S
Sbjct: 146 NSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVL---MFNLVINGFCKAKDLDS 202

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              L++V+ E+G                C P+V+ + ++I  LC+     +A+ LLE+M 
Sbjct: 203 AYKLLEVMIEKG----------------CVPNVFTFTILITGLCKANRVGEAQQLLEKMV 246

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G  C P+V TY+ +I+  CK G           ++ +A  LF+LM  +   P+VV +N
Sbjct: 247 TGG--CSPNVVTYSTVINGLCKQG-----------QVDDAYELFQLMERRNCPPNVVTHN 293

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            LIDG CK  RIE A +L+  M + GC P+ +TYNS I       ++D+A ++ + +   
Sbjct: 294 ILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPES 353

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
                 + +Y+ + H     GR+ +A    + LVD G  P   TY
Sbjct: 354 GVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATY 398



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 136/328 (41%), Gaps = 72/328 (21%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             + N V      L+ M   G    V T S   +I  L ++G V++A   F  M++  C 
Sbjct: 229 LCKANRVGEAQQLLEKMVTGGCSPNVVTYST--VINGLCKQGQVDDAYELFQLMERRNCP 286

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM----- 256
           P+V  +N++I+ LC+     +AR L  +M   G  C PD+ TY  LI   CK        
Sbjct: 287 PNVVTHNILIDGLCKAKRIEEARQLYHRMRETG--CAPDIITYNSLIDGLCKSFQVDEAF 344

Query: 257 -------QTGCRKA-------------IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                  ++G   A                R+ +A  +F +++ KGF PD+  Y  LI  
Sbjct: 345 QLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILE 404

Query: 297 CCKTYR-----------------------------------IERALELFDDMNKKGCIPN 321
            CKT R                                    ERA++LFD M  +GC  +
Sbjct: 405 YCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDD 464

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKM-----QNLNHGVPTSSSYTPIIHALCEAGRVLE 376
            + YN  +   +  ++ +KA+ ++ ++     +  N   P+SS+   ++ +LC+ GR  +
Sbjct: 465 ALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFN---PSSSAVDALVESLCQVGRTDD 521

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDALN 404
           A+  L ++ + G      +Y  +   L+
Sbjct: 522 AKQLLHKMSERGFAAAVSSYNGLLSGLS 549



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 112/267 (41%), Gaps = 50/267 (18%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE---- 228
           T L+  L + G  +EA      M    C PD   ++ +I+ LC+ G+  +A  +LE    
Sbjct: 82  TALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQ 141

Query: 229 ----------------------QMELP----------GFRCPPDVYTYTILISSYCKYGM 256
                                  +EL           GF   P V  + ++I+ +CK   
Sbjct: 142 RGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGF--TPTVLMFNLVINGFCK--- 196

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                    + +  A  L  +M+ KG VP+V  +  LI G CK  R+  A +L + M   
Sbjct: 197 --------AKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTG 248

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           GC PN VTY++ I       ++D A E+ + M+  N   P   ++  +I  LC+A R+ E
Sbjct: 249 GCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNC-PPNVVTHNILIDGLCKAKRIEE 307

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           AR     + + G  P   TY  + D L
Sbjct: 308 ARQLYHRMRETGCAPDIITYNSLIDGL 334



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 108/273 (39%), Gaps = 82/273 (30%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR----------------------- 236
           C P+ + Y ++I      G+ + A  LLE+M+  GF                        
Sbjct: 5   CMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEAL 64

Query: 237 ---------CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
                    C PDV TYT L+ + CK G           +  EA  + R M+ +G  PD 
Sbjct: 65  EHFRAMAKDCAPDVMTYTALVHALCKAG-----------KFDEAQGMLREMIARGCAPDT 113

Query: 288 VAYNCLIDGCCKTYRIERALELFDDM--------------------NK------------ 315
           V ++ LIDG CK    E+A  + +D+                    NK            
Sbjct: 114 VTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLG 173

Query: 316 ----KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCE 370
               KG  P  + +N  I  +    ++D A +++  M  +  G VP   ++T +I  LC+
Sbjct: 174 VVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVM--IEKGCVPNVFTFTILITGLCK 231

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           A RV EA+  L ++V GG  P   TY  V + L
Sbjct: 232 ANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGL 264



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 99/232 (42%), Gaps = 16/232 (6%)

Query: 172 VTCLIKVLG---EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           V  L  VLG   E      A+  F  M    C  D   YN+V+  + R    NKA  +LE
Sbjct: 430 VNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLE 489

Query: 229 Q-MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           Q ++    +  P       L+ S C+ G           R  +A  L   M  +GF   V
Sbjct: 490 QVIDKRDRKFNPSSSAVDALVESLCQVG-----------RTDDAKQLLHKMSERGFAAAV 538

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
            +YN L+ G  +  R + A ++F+ M   G  P   T N  I +     ++D A E++++
Sbjct: 539 SSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQR 598

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           M  L    P   +   +I   C++GR   AR  L E+ + G  P + T+ L+
Sbjct: 599 MSKLGC-CPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 649


>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 544

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 119/231 (51%), Gaps = 19/231 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+ L   G V+EA      M  F C PD+  YN++++ LCR+   ++AR LLE++ L  
Sbjct: 219 LIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCL-- 276

Query: 235 FRC--PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            +C   P+V +YT +IS YC+             ++ EA+ LF  M+  G  P+V  ++ 
Sbjct: 277 -KCEFAPNVVSYTTVISGYCRLS-----------KMDEASSLFYEMVRSGTKPNVFTFSA 324

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG  K   +  AL +   +   GC PN +T  S I  Y     ++  +++ R+M   N
Sbjct: 325 LVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNARN 384

Query: 353 HGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             +P +  +Y+ +I ALC++ R+ EAR+ L  L     VP  + Y  V D 
Sbjct: 385 --IPANLYTYSVLISALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDG 433



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 130/299 (43%), Gaps = 17/299 (5%)

Query: 123 ERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE 182
           +RF  +F   +T   +  V  R NN    + F +  +R       +  +   L++ L + 
Sbjct: 63  DRFLGYFREHLTPSHVLEVVKRFNNPNLGFKFFR-FTRERLSMSHSFWTYNMLLRSLCQA 121

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           GL N A   +  M+     PD      ++++      F+ ++ LL + +  G +   DV 
Sbjct: 122 GLHNSAKLLYDSMRSDGQLPDSRLLGFLVSSFALADRFDVSKELLAEAQCSGVQV--DVI 179

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
            Y   ++   K+            R+ +A  LFR ++      D   +N LI G C    
Sbjct: 180 VYNNFLNILIKHN-----------RLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGD 228

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           ++ A EL  DM   GC P+ VTYN  +     ++++D+A +++ ++       P   SYT
Sbjct: 229 VDEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYT 288

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA-LNAAEEPSLLDDGLRKRI 420
            +I   C   ++ EA     E+V  G+ P  +T+  + D  + A +  S L  G+ K+I
Sbjct: 289 TVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASAL--GMHKKI 345



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 16/192 (8%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           +M R G    V T S   L+    + G +  AL    ++    C P+V     +IN  CR
Sbjct: 309 EMVRSGTKPNVFTFSA--LVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLINGYCR 366

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
            G  N    L  +M       P ++YTY++LIS+ CK             R+ EA +L R
Sbjct: 367 AGWVNHGLDLWREMNARNI--PANLYTYSVLISALCK-----------SNRLQEARNLLR 413

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
           ++     VP    YN +IDG CK+  I+ A  +  +M +K C P+++T+   I  + +  
Sbjct: 414 ILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEMEEK-CKPDKLTFTILIIGHCMKG 472

Query: 337 EIDKAIEMMRKM 348
              +AI +  KM
Sbjct: 473 RTPEAIGIFYKM 484


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 142/316 (44%), Gaps = 17/316 (5%)

Query: 90  IANNVLVLGPAAYRDPQKVTL--GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNN 147
           + N   VLG   YR         G  +A E +        F  +   C  + +   R ++
Sbjct: 185 MVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDD 244

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           +   +   + MS+  N     + + + LI  L E G + EA      M +  C+P    Y
Sbjct: 245 LGEAFRVFEKMSKEENCR-PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTY 303

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
            V+I A C +G  +KA  +L++M      C P+V+TYTILI   C+ G           +
Sbjct: 304 TVLIKAKCDIGMTDKAMKMLDEMATKA--CVPNVHTYTILIDRLCREG-----------K 350

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           I EAN +FR ML  G  P ++ +N LI+G CK   +  A +L   M K  C PN  TYN 
Sbjct: 351 IEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNE 410

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            +     V++  KA  ++R++ + N  +P   +Y  ++   C+ G++  A +    +   
Sbjct: 411 LMEGLCRVSKSYKAFLLLRRVVD-NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSA 469

Query: 388 GSVPREYTYKLVCDAL 403
           G  P  +T+  + D L
Sbjct: 470 GLEPDGFTFTALIDGL 485



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 32/253 (12%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L T  +  C +  LG++  +NEA A   +M ++   P V  + ++I   CR G    +  
Sbjct: 542 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 601

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           +LE+M+  G  C P+VYTYTI+I+  C  G           R+ EA  +   M   G  P
Sbjct: 602 MLERMKQAG--CSPNVYTYTIIINGLCNNG-----------RVEEAETILFSMSSFGVSP 648

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI------- 338
           +   Y  L+    K  R++RA ++   M K GC PN   Y++ +  + + N         
Sbjct: 649 NHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALS 708

Query: 339 ---DKAIEMMRKMQNLNH---------GVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
              D     +   +N N+         GVPT   Y  ++  LC+ GR++EA     ++V 
Sbjct: 709 STGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVK 768

Query: 387 GGSVPREYTYKLV 399
            G  P +    ++
Sbjct: 769 HGLFPDKAISSII 781



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 29/261 (11%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           +T + T LIK   + G+ ++A+     M    C P+V+ Y ++I+ LCR G   +A  + 
Sbjct: 299 STRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVF 358

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG-----------MQTG-CRKAIR---------- 265
            +M   G    P + T+  LI+ YCK G           M+ G C+  IR          
Sbjct: 359 RKMLKHGL--CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLC 416

Query: 266 --RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              + ++A  L R ++  G +PD V YN L+DG CK  ++  A  +F+ MN  G  P+  
Sbjct: 417 RVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGF 476

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLA 382
           T+ + I     +  +++A  ++  M  +  G+     ++T +I   C+ G+  +      
Sbjct: 477 TFTALIDGLCKLGRLEQANGILGSM--VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFE 534

Query: 383 ELVDGGSVPREYTYKLVCDAL 403
            +V+   +   +T+    DAL
Sbjct: 535 NMVENRCLTTAHTFNCFLDAL 555



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 16/203 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN++++  C+ G  N A  +   M   G    PD +T+T LI   CK G      
Sbjct: 438 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLE--PDGFTFTALIDGLCKLG------ 489

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +AN +   M+ KG   D V +  LIDG CK  + +    LF++M +  C+  
Sbjct: 490 -----RLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTT 544

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDF 380
             T+N F+       ++++A  M+ KM  + +G VP+  ++T +I   C AG    +   
Sbjct: 545 AHTFNCFLDALGKDYKLNEANAMLGKM--MKYGLVPSVVTHTILIEGHCRAGETALSLKM 602

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L  +   G  P  YTY ++ + L
Sbjct: 603 LERMKQAGCSPNVYTYTIIINGL 625



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 14/240 (5%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG L    +   L+    +EG +N A   F  M      PD + +  +I+ LC++G   +
Sbjct: 434 NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 493

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  +L  M   G     D  T+T LI  +CK G           +  +   LF  M+   
Sbjct: 494 ANGILGSMVKKGI--SLDEVTFTALIDGHCKIG-----------KAKDVCFLFENMVENR 540

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
            +     +NC +D   K Y++  A  +   M K G +P+ VT+   I  +    E   ++
Sbjct: 541 CLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSL 600

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +M+ +M+      P   +YT II+ LC  GRV EA   L  +   G  P  +TY ++  A
Sbjct: 601 KMLERMKQAGCS-PNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKA 659



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 111/258 (43%), Gaps = 51/258 (19%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           GE  L   +L    RMKQ  C P+VY Y ++IN LC  G   +A  +L  M    F   P
Sbjct: 594 GETAL---SLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSM--SSFGVSP 648

Query: 240 DVYTYTILISSYCKYG------------MQTGCR-----------------KAIRRRIWE 270
           + +TY +L+ ++ K G            ++ GC+                  AI  R   
Sbjct: 649 NHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALS 708

Query: 271 A---------------NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
           +               N+     + K  VP    YN L+ G CK  RI  A +L  DM K
Sbjct: 709 STGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVK 768

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
            G  P++   +S I +Y    + D  +E M+ + + N  VP+ +SY  +IH L   GRV 
Sbjct: 769 HGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLD-NKFVPSFASYCWVIHGLRNEGRVQ 826

Query: 376 EARDFLAELVDGGSVPRE 393
           EA+  +++LV    +  E
Sbjct: 827 EAQKLVSDLVRHTGIEEE 844



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 4/145 (2%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           ++R M+ +GFV   + Y  +++  CK   ++ A      + + G   +     S +    
Sbjct: 181 VYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANC 240

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             +++ +A  +  KM    +  P S +Y+ +IH LCEAGR+ EA     E+V+ G  P  
Sbjct: 241 RRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPST 300

Query: 394 YTYKLV----CDALNAAEEPSLLDD 414
            TY ++    CD     +   +LD+
Sbjct: 301 RTYTVLIKAKCDIGMTDKAMKMLDE 325


>gi|255660928|gb|ACU25633.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 481

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 140/281 (49%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 175 L-IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L I   G+EG+V E++  F +M++      + +Y+ +   + R G +  ++    +M   
Sbjct: 85  LMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ +LI  +   G           ++  AN  F  +  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVLIWGFFLSG-----------KVETANRFFEDLKSREITPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M +K   P  VTY + I+ Y+ ++ +D A+ ++ +M+ L  
Sbjct: 192 INGYTRVKKMEEAEKYFLEMKEKKIDPTVVTYTTLIKGYASIDRVDDALRLVEEMKGL-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC+A ++ EAR  L E+VD    P++
Sbjct: 250 GIKPNAITYSTLLPGLCDAEKMSEARSLLKEMVDKYIAPKD 290



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 102/243 (41%), Gaps = 39/243 (16%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--LMIDSYGKEGIVQESVKLFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   +   F  M+ +G  P    +N LI G   + ++E 
Sbjct: 109 LGVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA----IEMMRKMQNLNHGVPTSSSY 361
           A   F+D+  +   P+ VTYN+ I  Y+ V ++++A    +EM  K  +     PT  +Y
Sbjct: 169 ANRFFEDLKSREITPDVVTYNTMINGYTRVKKMEEAEKYFLEMKEKKID-----PTVVTY 223

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLR 417
           T +I       RV +A   + E+   G  P   TY      +CDA   +E  SLL + + 
Sbjct: 224 TTLIKGYASIDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCDAEKMSEARSLLKEMVD 283

Query: 418 KRI 420
           K I
Sbjct: 284 KYI 286



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 22/213 (10%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK    +P+   Y+ ++  LC     ++AR LL
Sbjct: 219 TVVTYTTLIKGYASIDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCDAEKMSEARSLL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS CK G            +  A  + + M+      + 
Sbjct: 279 KEM-VDKYIAPKDNSIFIRLISSQCKAG-----------NLDAAADVLKAMIRLSIPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCI--PNRV------TYNSFIRYYSVVNEID 339
             Y  LI+  CK  + ++A++LFD + +K  I  P          YN  I Y     +  
Sbjct: 327 GHYGVLIENYCKAGKYDQAVKLFDKLIEKDIILRPQSTLHMEPSAYNPLIEYLCNNGQTG 386

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           KA  ++R++  L  GV  S S   +I    + G
Sbjct: 387 KAETLVRQLMKL--GVQDSISLNTLIRGHSQEG 417


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 120/242 (49%), Gaps = 16/242 (6%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G +    + T LI    + G V+ AL  F  M     RPD+  YN +IN LC+VG+  
Sbjct: 240 GKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLK 299

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLF 280
           +AR L+ +M   G R  PD  T+T LI   CKYG M++     I+RR+ E          
Sbjct: 300 EARRLVNEMSASGLR--PDRITFTTLIDGCCKYGDMESALE--IKRRMVE---------- 345

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G   D VA+  LI G C+  R+  A  +  DM   G  P+  TY   +  +     +  
Sbjct: 346 EGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXM 405

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
             +++++MQ+  H VP   +Y  +++ LC+ G+V  A+  L  +++ G  P + TY ++ 
Sbjct: 406 GFKLLKEMQSDGH-VPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILL 464

Query: 401 DA 402
           + 
Sbjct: 465 EG 466



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 16/235 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  S   LI    + G V E       M+  R  PDV+ ++ +IN LC+ G  ++   L 
Sbjct: 176 TVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLF 235

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M   G    P+  T+T+LI   CK G           ++  A   F++ML +G  PD+
Sbjct: 236 DEMCGKGLV--PNGVTFTVLIDGQCKGG-----------KVDLALKNFQMMLAQGVRPDL 282

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V YN LI+G CK   ++ A  L ++M+  G  P+R+T+ + I       +++ A+E+ R+
Sbjct: 283 VTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRR 342

Query: 348 MQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           M  +  G+     ++T +I  LC  GRV +A   L +++  G  P + TY +V D
Sbjct: 343 M--VEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVD 395



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 16/225 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+ + +NV+++  C+VG    AR + +++   G R  P V ++  LIS  CK G      
Sbjct: 140 PNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLR--PTVVSFNTLISGCCKAGA----- 192

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + E   L  +M  +   PDV  ++ LI+G CK  R++    LFD+M  KG +PN
Sbjct: 193 ------VEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPN 246

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            VT+   I       ++D A++  + M  L  GV P   +Y  +I+ LC+ G + EAR  
Sbjct: 247 GVTFTVLIDGQCKGGKVDLALKNFQMM--LAQGVRPDLVTYNALINGLCKVGDLKEARRL 304

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           + E+   G  P   T+  + D      +     +  R+ + +GIE
Sbjct: 305 VNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIE 349



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 8/151 (5%)

Query: 259 GCRKAIRRRI------WEANHLFRL-MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           GC   +RR +       E +  F L +L  G+ P+   +N L+ G CK   +  A  +FD
Sbjct: 107 GCENLLRRVVRLRPVELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFD 166

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
           ++ K+G  P  V++N+ I        +++   +   M++     P   +++ +I+ LC+ 
Sbjct: 167 EIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVMES-ERVCPDVFTFSALINGLCKE 225

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           GR+ E      E+   G VP   T+ ++ D 
Sbjct: 226 GRLDEGSLLFDEMCGKGLVPNGVTFTVLIDG 256



 Score = 45.4 bits (106), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 16/130 (12%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T ++    ++G V         M+     P V  YN ++N LC+ G    A+ LL+ M  
Sbjct: 391 TMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLN 450

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P+  TY IL+  + K+G       ++   I+ +         KG V D  +Y  
Sbjct: 451 VGV--APNDITYNILLEGHSKHG------SSVDVDIFNSE--------KGLVKDYASYTA 494

Query: 293 LIDGCCKTYR 302
           L++   KT +
Sbjct: 495 LVNESSKTSK 504


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 115/243 (47%), Gaps = 17/243 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  + +EG V+EA      M +    PDV  Y+ ++          +AR L + M   G
Sbjct: 314 LVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKG 373

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PDV++Y ILI+ YCK            +RI EA  LF  M+ +G  P+ V+YN LI
Sbjct: 374 --CKPDVFSYNILINGYCKV-----------KRIDEAKQLFNEMIHQGLTPNNVSYNTLI 420

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C+   +  A  LF +M+  G +PN  TY+  +  +       KA  + R MQ+  + 
Sbjct: 421 HGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQS-TYS 479

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
            P    Y  +I A+C++G + +AR   +EL   G  P    Y  +   +N   +  LLD+
Sbjct: 480 KPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTI---INGLCKEGLLDE 536

Query: 415 GLR 417
            L 
Sbjct: 537 ALE 539



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 115/236 (48%), Gaps = 16/236 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LI  L + G   +A+  F  M    CRPDVY Y  +IN LC++G    A  LL
Sbjct: 167 TIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLL 226

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++ME  G  C P+V TY+ +I S+ K            RR+ EA  +F  M  KG  PD+
Sbjct: 227 KKMEEAG--CQPNVVTYSTIIDSHRK-----------DRRVNEALDIFSYMKVKGISPDI 273

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             YN LI G C   + + A  L ++M     +P+ VT+N  +       ++ +A  +++ 
Sbjct: 274 FTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKT 333

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           M  +  GV P   +Y+ +++       V+EAR     ++  G  P  ++Y ++ + 
Sbjct: 334 MTEM--GVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILING 387



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 14/226 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +++ LI        V+ A +   ++ +   +P +  +  +IN LC+VG F +A  L + M
Sbjct: 135 TLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDM 194

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G  C PDVYTYT +I+  CK G +T     + +++ EA          G  P+VV Y
Sbjct: 195 VARG--CRPDVYTYTTIINGLCKIG-ETAAAAGLLKKMEEA----------GCQPNVVTY 241

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + +ID   K  R+  AL++F  M  KG  P+  TYNS I+     ++  +A  ++ +M++
Sbjct: 242 STIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRS 301

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           LN  +P   ++  ++  +C+ G+V EA+  L  + + G  P   TY
Sbjct: 302 LNI-MPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTY 346



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 19/235 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF-NKARFLLEQMELPGFRCPPDVYT 243
           +++ALA+F  M   +  P +  +  +++A+ ++G + +    L +QMEL G    P++YT
Sbjct: 78  IDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGL--SPNIYT 135

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
            +ILI+ +              +R+  A  +   ++  G  P +V +  LI+  CK  + 
Sbjct: 136 LSILINCFSHL-----------QRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKF 184

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
            +A+ELFDDM  +GC P+  TY + I     + E   A  +++KM+      P   +Y+ 
Sbjct: 185 AQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQ-PNVVTYST 243

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDD 414
           II +  +  RV EA D  + +   G  P  +TY    + +C+     E  +LL++
Sbjct: 244 IIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNE 298



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 13/180 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L + G + EA   F  M      P+++ Y+++++  C+ G F KA  L   M
Sbjct: 415 SYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAM 474

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +       P++  Y ILI + CK G            + +A  LF  +  KG  P+   Y
Sbjct: 475 Q--STYSKPNLVMYNILIDAMCKSG-----------NLRDARKLFSELFVKGLQPNAQIY 521

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             +I+G CK   ++ ALE F +M + GC P+ ++YN  IR +    +  +A++++ +M++
Sbjct: 522 TTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRD 581



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 15/169 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           +  K+M   GN   + T S+  L+    ++G   +A   F  M+    +P++  YN++I+
Sbjct: 434 NLFKNMHTNGNLPNLFTYSI--LLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILID 491

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           A+C+ GN   AR L  ++ + G +  P+   YT +I+  CK G+           + EA 
Sbjct: 492 AMCKSGNLRDARKLFSELFVKGLQ--PNAQIYTTIINGLCKEGL-----------LDEAL 538

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             FR M   G  PD ++YN +I G        RA++L  +M  KG I +
Sbjct: 539 EAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIAD 587



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 2/161 (1%)

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI-ERALELFDDMNKKGCIPNRVT 324
           R I +A   F  ML +  +P ++ +  L+    K  +  +  + L   M   G  PN  T
Sbjct: 76  RNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYT 135

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            +  I  +S +  +D A  ++ K+  L    PT  ++T +I+ LC+ G+  +A +   ++
Sbjct: 136 LSILINCFSHLQRVDLAFSVLAKIIKLGLQ-PTIVTFTTLINWLCKVGKFAQAMELFDDM 194

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           V  G  P  YTY  + + L    E +     L+K    G +
Sbjct: 195 VARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQ 235


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 111/235 (47%), Gaps = 14/235 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  S   +I  +   G ++ A     RM +    PDVY Y  +I  LCRVG    AR + 
Sbjct: 274 TVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVF 333

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           E+M   G +  P+   +TILI ++CK G                  L R M  +G  PD 
Sbjct: 334 EKMCGRGMK--PNAVVFTILIDAHCKKG-----------DAETMLELHREMRERGVRPDA 380

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V YN +++G C+   ++ A  +  +M   G  P+ VTY + I  Y    E+D A+E+ + 
Sbjct: 381 VTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQN 440

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           M     G+    +YT +I  L +AGR  +A   L E+++ G  P   TY +V DA
Sbjct: 441 MVAEGVGL-DEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDA 494



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 101/230 (43%), Gaps = 14/230 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    ++G     L     M++   RPD   YN ++N LCR  +   A  ++ +M  
Sbjct: 349 TILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRS 408

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G R  PD  TYT LI  YCK              +  A  + + M+ +G   D V Y  
Sbjct: 409 AGLR--PDTVTYTTLIDGYCK-----------EEELDMAMEIKQNMVAEGVGLDEVTYTA 455

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI G  K  R   A  +  +M + G  P+  TY   I  +    ++   + ++++MQN  
Sbjct: 456 LISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKG 515

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              P   +Y  I++  C+ G++  A   L  +++ G  P + TY ++ D 
Sbjct: 516 RK-PGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDG 564



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 103/223 (46%), Gaps = 16/223 (7%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EA A + ++      P+   +NV++  L R+G    A+ + ++M+  G R    V ++  
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVR--RTVVSFNT 280

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           +IS  C+ G   G  + + RR+ EA          G  PDV  Y  LI G C+  RIE A
Sbjct: 281 MISGMCRAGDLDGA-ETLHRRMSEA----------GVTPDVYTYGALIQGLCRVGRIEDA 329

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
             +F+ M  +G  PN V +   I  +    + +  +E+ R+M+    GV P + +Y  I+
Sbjct: 330 RGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRE--RGVRPDAVTYNAIV 387

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           + LC A  +  A   + E+   G  P   TY  + D     EE
Sbjct: 388 NGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEE 430



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 16/157 (10%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI  L + G   +A      M +    PD   Y +VI+A CR G+      LL++M+ 
Sbjct: 454 TALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQN 513

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  P V TY ++++ +CK G           ++  A+ L   M+  G  PD + YN 
Sbjct: 514 KGRK--PGVVTYNVIMNGFCKLG-----------QMKNADMLLNAMINIGVSPDDITYNI 560

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           L+DG CK  ++    EL    + KG +P+   Y S +
Sbjct: 561 LLDGHCKHGKVTDIEEL---KSAKGTVPDLGVYTSIV 594


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 120/243 (49%), Gaps = 20/243 (8%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E+LA F  M Q    PDV  +  +I+A C+ GN  +A  L+ QM   G R   +  
Sbjct: 130 GCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLR--MNEV 187

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G       A+             M   G  P VV YN LI+G CK  R
Sbjct: 188 TFTALIDGFCKKGFLDDALLAVEE-----------MRKCGIQPSVVCYNALINGYCKLGR 236

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           ++ A EL  +M  K   P+ VTY++ I  Y  V  +D A ++ +KM  L  GV P + +Y
Sbjct: 237 MDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKM--LKKGVLPDAITY 294

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLR 417
           + +I  LCE  R+ +A +    ++  G  P E+TY  +    C   N  +  SL D+ +R
Sbjct: 295 SSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIR 354

Query: 418 KRI 420
           K +
Sbjct: 355 KGV 357



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 27/217 (12%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    ++G +++AL     M++   +P V  YN +IN  C++G  + AR L+ +ME 
Sbjct: 190 TALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA 249

Query: 233 PGFRCPPDVYTYTILISSYCKYGM--------QTGCRKAI----------------RRRI 268
              R  PDV TY+ +IS YCK G         Q   +K +                 +R+
Sbjct: 250 K--RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL 307

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +A  LF  ML  G  PD   Y  LIDG CK   +E+AL L D+M +KG +P+ VTY+  
Sbjct: 308 NDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVL 367

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           I   S      +A  ++ K+ + +  VP +  Y  ++
Sbjct: 368 INGLSKSARTKEAHRLLFKLYHEDP-VPDNIKYDALM 403



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 17/240 (7%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M R G    V T ++  L++ L   G + EA+     M+   C P+   YN ++ A CR 
Sbjct: 1   MVRHGVAPNVYTYNI--LVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRA 58

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G  + A  ++  M   G    P++ T+  +++  CK G   G RK           +F  
Sbjct: 59  GELDGAERVVSLMREEG-NAKPNLVTFNSMVNGLCKAGRMEGARK-----------VFDE 106

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+ +G  PDVV+YN L+ G CK   +  +L +F +M ++G +P+ VT+ S I        
Sbjct: 107 MVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGN 166

Query: 338 IDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +++A+ ++ +M+    G+  +  ++T +I   C+ G + +A   + E+   G  P    Y
Sbjct: 167 LEQAVALVAQMR--ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCY 224



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 44/222 (19%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + + LI+ L EE  +N+A   F  M Q   +PD + Y  +I+  C+ GN  KA
Sbjct: 286 GVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKA 345

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG--------------------------MQ 257
             L ++M   G    PDV TY++LI+   K                            + 
Sbjct: 346 LSLHDEMIRKGVL--PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 403

Query: 258 TGCRKA-------------IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             C KA             ++  + EA+ +++ ML + +  D   Y+ LI G C+   + 
Sbjct: 404 LCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVR 463

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYY---SVVNEIDKAIE 343
           +AL     M + G  PN  +  S +R      +V E D AI+
Sbjct: 464 KALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQ 505



 Score = 42.4 bits (98), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 13/151 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           SV  L+K    +GL+ EA   +  M     + D   Y+++I+  CR GN  KA    +QM
Sbjct: 413 SVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQM 472

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              GF   P+  +   L+    + GM           + EA++  + +L    + D  A 
Sbjct: 473 LRSGF--SPNSTSTISLVRGLFEEGM-----------VVEADNAIQDLLTCCPLADAEAS 519

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             LID   K   ++  +++   M + G +P+
Sbjct: 520 KALIDLNRKEGNVDALIDVLCGMARDGLLPS 550


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 17/225 (7%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           + +M    C P+V  YN  +N L R G    A+ + E+M   G  C PDV TY+ LI  +
Sbjct: 505 YKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAG--CSPDVITYSTLIHGF 562

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
                      ++ R+  +A+ LF  M+ +G  P+ V YNCL+ G CK  + + A ELF 
Sbjct: 563 -----------SLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFR 611

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
            M ++GC P+RVTY + +  +  V +I++A+E+  +M +  H  P   +Y  ++     A
Sbjct: 612 KMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHD-PDVVAYNCLLKGFFRA 670

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
           G+  EA+     +V     P   ++ ++ D L+ A+    LDD +
Sbjct: 671 GKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKR---LDDAV 712



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 13/218 (5%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++A   F  M    CRP+   YN +++ LC+    ++A  L  +M   G  C PD  TYT
Sbjct: 569 DQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG--CDPDRVTYT 626

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            L+  +C  G           +I +A  +F  M+ KG  PDVVAYNCL+ G  +  +   
Sbjct: 627 TLLYGFCNVG-----------KIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGE 675

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A +LF  M  + C P+ V++N  I   S    +D A+E+  +M+  +   P   +Y  +I
Sbjct: 676 AKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLI 735

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             LC   R+ EA     E+      P  + + ++ +A+
Sbjct: 736 FGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAI 773



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 122/265 (46%), Gaps = 15/265 (5%)

Query: 164 GELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G  +  SS TC  +I+ L + G V+ AL+    M +    PD+  ++++IN LC+     
Sbjct: 367 GRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQ 426

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF- 280
           +A+  L+ M+          ++Y  L++S CK            +++ +A  +F  M+  
Sbjct: 427 EAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKA-----------KKVHQAFAIFSTMVSE 475

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           + FVPDVV+Y+ LIDG CK   + RA +L+  M    C+PN  TYN+F+        I  
Sbjct: 476 RSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIAD 535

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A  +  +M       P   +Y+ +IH    A +  +A +    ++  G  P   TY  + 
Sbjct: 536 AQGVYEEMVAAGCS-PDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLL 594

Query: 401 DALNAAEEPSLLDDGLRKRIRDGIE 425
             L    +P    +  RK +  G +
Sbjct: 595 HGLCKESKPDEAHELFRKMVERGCD 619



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 15/196 (7%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CL+  L +E   +EA   F +M +  C PD   Y  ++   C VG   +A  + ++M   
Sbjct: 592 CLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSK 651

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    PDV  Y  L+  + + G           +  EA  LF++M+ +   PD V++N +
Sbjct: 652 GH--DPDVVAYNCLLKGFFRAG-----------KPGEAKQLFQVMVSRQCKPDTVSHNIM 698

Query: 294 IDGCCKTYRIERALELFDDMNKK-GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           IDG  K  R++ A+E+F+ M +  GC P+ VTYNS I        + +A+++ +++  L 
Sbjct: 699 IDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLK 758

Query: 353 HGVPTSSSYTPIIHAL 368
              P   ++  ++ A+
Sbjct: 759 LS-PDPHAFNVLLEAI 773



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 14/173 (8%)

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLID 295
           C PD   Y+ ++ ++CK              + EA  LF  M  +   P + VA+   + 
Sbjct: 265 CKPDATIYSYMVLAHCKL-----------ENLDEAFKLFLEMAVESKAPLNNVAWTAFLS 313

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G CK+ +IE+A E    M ++    ++  Y+  IR       IDKA E   ++   N   
Sbjct: 314 GLCKSGKIEQAFEACRTM-QESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQ- 371

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           P+S +   +I  LC+AGRV  A   L  ++  G  P   T+ ++ + L  A++
Sbjct: 372 PSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADK 424



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 108/260 (41%), Gaps = 55/260 (21%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVVINA 213
           L+ + ++ +G+     +V  +IK L + G   EAL TF+R  Q R  + DV+ YN +++ 
Sbjct: 83  LEVVVKKWDGKSSCRETVGAVIKHLRDGG---EAL-TFFRWLQARNFKHDVFTYNCLLDK 138

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           L R  +  +A  + E+M   G    P+ +TY +L+ S C             R   EA  
Sbjct: 139 LIRHRDLKQAGQVFEKMVAQGV--VPNGFTYAVLVQSSC-----------YERNSDEAVR 185

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE----------------------------- 304
            F  M+ KGF P    Y  + + C K    E                             
Sbjct: 186 FFGEMVDKGFKPSSTLYQKVTE-CLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNF 244

Query: 305 -------RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
                   A +LF  M K GC P+   Y+  +  +  +  +D+A ++  +M   +     
Sbjct: 245 VIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLN 304

Query: 358 SSSYTPIIHALCEAGRVLEA 377
           + ++T  +  LC++G++ +A
Sbjct: 305 NVAWTAFLSGLCKSGKIEQA 324



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 14/133 (10%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CL+K     G   EA   F  M   +C+PD  ++N++I+ L +    + A  + E+ME  
Sbjct: 662 CLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERME-Q 720

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
              C PD+ TY  LI   C             +R+ EA  +F+ +      PD  A+N L
Sbjct: 721 DHGCSPDLVTYNSLIFGLCG-----------EQRLSEAMKVFKEIDRLKLSPDPHAFNVL 769

Query: 294 IDG--CCKTYRIE 304
           ++   C   Y+ E
Sbjct: 770 LEAIKCGIVYQFE 782


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 123/251 (49%), Gaps = 18/251 (7%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           +L+ M  R  N  +V  S+V   +  L ++GLV+EAL     M     +P++  Y  +I 
Sbjct: 203 WLRKMEERNWNPNVVVYSTV---MDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQ 259

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC  G + +A  LL++M   G    PD+ +  IL+   CK G           +I +A 
Sbjct: 260 GLCNFGRWKEAGSLLDEMMKMGVM--PDLQSLNILVDVLCKEG-----------KIMQAK 306

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +   M+  G VPDV  YN LID  C   +++ A  +F+ M  +GC+P+ V Y S I  +
Sbjct: 307 SVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGW 366

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             +  I+KA+ ++ +M  +    P   ++T +I   C+ GR L A++    +   G VP 
Sbjct: 367 CKIKNINKAMHLLDEMIKVGF-TPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPN 425

Query: 393 EYTYKLVCDAL 403
             T  ++ D L
Sbjct: 426 LQTCAIILDGL 436



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 106/226 (46%), Gaps = 18/226 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA   F  M    C PD+ AY  +I+  C++ N NKA  LL++M   GF   PDV T+
Sbjct: 337 MDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFT--PDVVTW 394

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T LI  +C+ G           R   A  LF  M   G VP++     ++DG CK+  + 
Sbjct: 395 TTLIGGFCQVG-----------RPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLS 443

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYT 362
            AL LF  M K     N V Y+  +       +++ A+E+   +  + L   V    +YT
Sbjct: 444 EALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINV---YAYT 500

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            +I+   + G + +A D L+ + + G +P   TY +    L A  E
Sbjct: 501 IMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAERE 546



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 105/240 (43%), Gaps = 17/240 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EAL  F+ M +    P V  + +++  + ++ ++  A  L+++M        PD +  
Sbjct: 56  IDEALNFFHTMAKMNPLPSVIDFTLLLGFIVKMKHYTTAISLVKEMH-SSLGIKPDTFIL 114

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ++I+S C             + +     +   ML  G  P VV +  LI+G C    + 
Sbjct: 115 NVVINSLCHL-----------KLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVG 163

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           RA+EL D + K G   +  TY   I     + +  +A+  +RKM+  N   P    Y+ +
Sbjct: 164 RAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWN-PNVVVYSTV 222

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRI 420
           +  LC+ G V EA     E+   G  P   TY      +C+     E  SLLD+ ++  +
Sbjct: 223 MDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGV 282



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 13/170 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G++    +   ++  L +  L++EAL+ F+ M++     ++  Y+++++ +C  G  N A
Sbjct: 421 GQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTA 480

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L   +   G +   +VY YTI+I+ + K G+           + +A  L   M   G 
Sbjct: 481 LELFSCLPAKGLQI--NVYAYTIMINGFAKQGL-----------LDKAEDLLSNMEENGC 527

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +PD   YN  + G      I R+++    M  KG   +  T    I Y S
Sbjct: 528 MPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGFSVDATTTEMIINYLS 577


>gi|359474405|ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Vitis vinifera]
          Length = 638

 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 136/282 (48%), Gaps = 18/282 (6%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
           F+ W      + H+     +   +F    N + + D ++  + R  G +V+  +   ++ 
Sbjct: 76  FFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIE--AYRVEGTVVSVKTFNVVLH 133

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
           +L E  L +EAL    +M +F  R D  AYN VI   C  G+ + A  L+++M L     
Sbjct: 134 LLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLIDLY- 192

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            P++ TY  +I  +C  G           R+ +A  LF++M   G  P+VV Y  ++DG 
Sbjct: 193 -PNMITYVTMIKGFCNVG-----------RLEDACKLFKVMKGHGCSPNVVVYTVILDGV 240

Query: 298 CKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           C+   +ERALEL  +M K+   C PN VTY S I+      ++ +A+E++ +M+      
Sbjct: 241 CRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCA- 299

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           P   + + ++   C  GRV EA   + ++V GG+V     Y 
Sbjct: 300 PNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYS 341



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 12/210 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +IK     G + +A   F  MK   C P+V  Y V+++ +CR G+  +A  LL +ME   
Sbjct: 201 MIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEKES 260

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+V TYT +I S C+ G           ++ EA  +   M   G  P+ V  + L+
Sbjct: 261 GDCSPNVVTYTSMIQSCCEKG-----------KLMEALEILDRMRACGCAPNRVTVSILM 309

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   R+E A +L D +   G +     Y+S I        + +A ++ R+M   N  
Sbjct: 310 KGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLVGNKNLQEAEKLFRRMLA-NAV 368

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            P   +   +I ALC  GRVL+      E 
Sbjct: 369 KPDGLACGTLIKALCLEGRVLDGFHLFDEF 398


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 127/277 (45%), Gaps = 27/277 (9%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  +T ++   L+  L  +G   EA      M      PDV+ YN++IN  C+ GN  KA
Sbjct: 621 GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKA 680

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK----AIRR------------- 266
             + E M   G R    V TYT LI +  K G      K    A+RR             
Sbjct: 681 LEIFENMSRRGVRA--TVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI 738

Query: 267 -------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   I  A  +   M  K   PD V YN L+ G C   R++ A +L D+M ++G  
Sbjct: 739 NSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQ 798

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ VTYN+ I  YS+  ++  A+ +  +M N     PT  +Y  +I  LC+ G+  +A +
Sbjct: 799 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFN-PTLLTYNALIQGLCKNGQGDDAEN 857

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            + E+V+ G  P + TY  + + L   +E ++ D+ L
Sbjct: 858 MVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERL 894



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 117/265 (44%), Gaps = 34/265 (12%)

Query: 114 KATEFYHWVERFFD-------FFHNEMT---CKEMGIVFARGNNVKGLWDFLKDMSRRGN 163
           + TE Y  VE           F +N +    CKE         NVK   +  ++MSRRG 
Sbjct: 641 RGTEAYELVEEMGGKGLAPDVFTYNILINGHCKE--------GNVKKALEIFENMSRRGV 692

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
              V T   T LI  L ++G V E    F    +   RPD+  YN +IN+    GN ++A
Sbjct: 693 RATVVT--YTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRA 750

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             ++ +ME    R  PD  TY  L+   C  G           R+ EA  L   M  +G 
Sbjct: 751 FEIMGEMEKK--RIAPDDVTYNTLMRGLCLLG-----------RVDEARKLIDEMTERGI 797

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PD+V YN LI G      ++ AL + ++M  KG  P  +TYN+ I+      + D A  
Sbjct: 798 QPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAEN 857

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHAL 368
           M+++M   N   P  S+Y  +I  L
Sbjct: 858 MVKEMVE-NGITPDDSTYISLIEGL 881



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 26/239 (10%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           ++T+S+  L+  L        A A F  M + R       +N+++  LC  G   +A  L
Sbjct: 455 ISTASLHPLLSALPSA----PAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALEL 510

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-P 285
           L QM  P      +  TY  +I+ +C  G           R+  A  + R M  +G + P
Sbjct: 511 LRQMPRP------NAVTYNTVIAGFCSRG-----------RVQAALDIMREMRERGGIAP 553

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEM 344
           +   Y  +I G CK  R++ A+++FD+M  KG + P  V YN+ I  Y    ++D A+  
Sbjct: 554 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 613

Query: 345 MRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             +M  +  GV  T ++Y  ++HAL   GR  EA + + E+   G  P  +TY ++ + 
Sbjct: 614 RDRM--VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILING 670



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 109/271 (40%), Gaps = 55/271 (20%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T++   +++ L   G    AL    +M     RP+   YN VI   C  G    A  ++ 
Sbjct: 488 TTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMR 543

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PDV 287
           +M   G    P+ YTY  +IS +CK G           R+ EA  +F  ML KG V P+ 
Sbjct: 544 EMRERG-GIAPNQYTYGTVISGWCKVG-----------RVDEAVKVFDEMLTKGEVKPEA 591

Query: 288 VAYNCLIDGCCKTYRIERAL-----------------------------------ELFDD 312
           V YN LI G C   +++ AL                                   EL ++
Sbjct: 592 VMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE 651

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEA 371
           M  KG  P+  TYN  I  +     + KA+E+   M     GV  T  +YT +I+AL + 
Sbjct: 652 MGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS--RRGVRATVVTYTALIYALSKK 709

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           G+V E      E V  G  P    Y  + ++
Sbjct: 710 GQVQETDKLFDEAVRRGIRPDLVLYNALINS 740



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIE 343
           P+ V YN +I G C   R++ AL++  +M ++G I PN+ TY + I  +  V  +D+A++
Sbjct: 517 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 576

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  +M       P +  Y  +I   C+ G++  A  +   +V+ G      TY L+  AL
Sbjct: 577 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 636


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 142/316 (44%), Gaps = 17/316 (5%)

Query: 90  IANNVLVLGPAAYRDPQKVTL--GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNN 147
           + N   VLG   YR         G  +A E +        F  +   C  + +   R ++
Sbjct: 162 MVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDD 221

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           +   +   + MS+  N     + + + LI  L E G + EA      M +  C+P    Y
Sbjct: 222 LGEAFRVFEKMSKEENCR-PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTY 280

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
            V+I A C +G  +KA  +L++M      C P+V+TYTILI   C+ G           +
Sbjct: 281 TVLIKAKCDIGMTDKAMKMLDEMATKA--CVPNVHTYTILIDRLCREG-----------K 327

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           I EAN +FR ML  G  P ++ +N LI+G CK   +  A +L   M K  C PN  TYN 
Sbjct: 328 IEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNE 387

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            +     V++  KA  ++R++ + N  +P   +Y  ++   C+ G++  A +    +   
Sbjct: 388 LMEGLCRVSKSYKAFLLLRRVVD-NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSA 446

Query: 388 GSVPREYTYKLVCDAL 403
           G  P  +T+  + D L
Sbjct: 447 GLEPDGFTFTALIDGL 462



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 116/271 (42%), Gaps = 52/271 (19%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L T  +  C +  LG++  +NEA A   +M ++   P V  + ++I   CR G    +  
Sbjct: 519 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 578

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           +LE+M+  G  C P+VYTYTI+I+  C  G           R+ EA  +   M   G  P
Sbjct: 579 MLERMKQAG--CSPNVYTYTIIINGLCNNG-----------RVEEAETILFSMSSFGVSP 625

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN--------- 336
           +   Y  L+    K  R++RA ++   M K GC PN   Y++ +  + + N         
Sbjct: 626 NHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALS 685

Query: 337 ----------------------------EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
                                       ++D A+++  +++    GVPT   Y  ++  L
Sbjct: 686 STGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKC--GVPTEDLYNFLVVGL 743

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           C+ GR++EA     ++V  G  P +    ++
Sbjct: 744 CKEGRIIEADQLTQDMVKHGLFPDKAISSII 774



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 29/261 (11%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           +T + T LIK   + G+ ++A+     M    C P+V+ Y ++I+ LCR G   +A  + 
Sbjct: 276 STRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVF 335

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG-----------MQTG-CRKAIR---------- 265
            +M   G    P + T+  LI+ YCK G           M+ G C+  IR          
Sbjct: 336 RKMLKHGL--CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLC 393

Query: 266 --RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              + ++A  L R ++  G +PD V YN L+DG CK  ++  A  +F+ MN  G  P+  
Sbjct: 394 RVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGF 453

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLA 382
           T+ + I     +  +++A  ++  M  +  G+     ++T +I   C+ G+  +      
Sbjct: 454 TFTALIDGLCKLGRLEQANGILGSM--VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFE 511

Query: 383 ELVDGGSVPREYTYKLVCDAL 403
            +V+   +   +T+    DAL
Sbjct: 512 NMVENRCLTTAHTFNCFLDAL 532



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 16/203 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN++++  C+ G  N A  +   M   G    PD +T+T LI   CK G      
Sbjct: 415 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLE--PDGFTFTALIDGLCKLG------ 466

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +AN +   M+ KG   D V +  LIDG CK  + +    LF++M +  C+  
Sbjct: 467 -----RLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTT 521

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDF 380
             T+N F+       ++++A  M+ KM  + +G VP+  ++T +I   C AG    +   
Sbjct: 522 AHTFNCFLDALGKDYKLNEANAMLGKM--MKYGLVPSVVTHTILIEGHCRAGETALSLKM 579

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L  +   G  P  YTY ++ + L
Sbjct: 580 LERMKQAGCSPNVYTYTIIINGL 602



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 14/240 (5%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG L    +   L+    +EG +N A   F  M      PD + +  +I+ LC++G   +
Sbjct: 411 NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 470

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  +L  M   G     D  T+T LI  +CK G           +  +   LF  M+   
Sbjct: 471 ANGILGSMVKKGI--SLDEVTFTALIDGHCKIG-----------KAKDVCFLFENMVENR 517

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
            +     +NC +D   K Y++  A  +   M K G +P+ VT+   I  +    E   ++
Sbjct: 518 CLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSL 577

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +M+ +M+      P   +YT II+ LC  GRV EA   L  +   G  P  +TY ++  A
Sbjct: 578 KMLERMKQAGCS-PNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKA 636



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 116/274 (42%), Gaps = 67/274 (24%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           GE  L   +L    RMKQ  C P+VY Y ++IN LC  G   +A  +L  M    F   P
Sbjct: 571 GETAL---SLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSM--SSFGVSP 625

Query: 240 DVYTYTILISSYCKYG------------MQTGCR-----------------KAIRRRIWE 270
           + +TY +L+ ++ K G            ++ GC+                  AI  R   
Sbjct: 626 NHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALS 685

Query: 271 A--------------------NHLFRLM-----------LFKGFVPDVVAYNCLIDGCCK 299
           +                    +H+FRLM           + K  VP    YN L+ G CK
Sbjct: 686 STGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCK 745

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             RI  A +L  DM K G  P++   +S I +Y    + D  +E M+ + + N  VP+ +
Sbjct: 746 EGRIIEADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLD-NKFVPSFA 803

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           SY  +IH L   GRV EA+  +++LV    +  E
Sbjct: 804 SYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEE 837



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 4/145 (2%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           ++R M+ +GFV   + Y  +++  CK   ++ A      + + G   +     S +    
Sbjct: 158 VYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANC 217

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             +++ +A  +  KM    +  P S +Y+ +IH LCEAGR+ EA     E+V+ G  P  
Sbjct: 218 RRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPST 277

Query: 394 YTYKLV----CDALNAAEEPSLLDD 414
            TY ++    CD     +   +LD+
Sbjct: 278 RTYTVLIKAKCDIGMTDKAMKMLDE 302


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 130/276 (47%), Gaps = 22/276 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L DM RRG    V T ++  L++   +     +A+     M+   C PD+  YNVV+N 
Sbjct: 178 VLDDMLRRGCVPDVVTYTI--LLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNG 235

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           +C+ G  + A   L+   LP   C P+  +Y I++   C              R  +A  
Sbjct: 236 ICQEGRVDDAIEFLKS--LPSHGCEPNTVSYNIVLKGLCT-----------AERWEDAEK 282

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L   M  KG+ P+VV +N LI   C+   +E A+E+ D + K GC PN ++YN  +  + 
Sbjct: 283 LMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFC 342

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
              ++D+A+  +  M  ++ G  P   SY  ++ ALC  G V  A + L +L D G  P 
Sbjct: 343 KQKKMDRAMAFVELM--VSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPV 400

Query: 393 EYTYKLVCDALNAA----EEPSLLDDGLRKRIRDGI 424
             +Y  V D L  A    E   LL++ + K ++  I
Sbjct: 401 LISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDI 436



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 118/262 (45%), Gaps = 38/262 (14%)

Query: 153 DFLKDMSRRGNGE----LVTTSS----------VTCLIKVLGEEGLVNEALATFYRMKQF 198
           D L+ + RRG+ E    LV + S             LIK L   G   EA     R    
Sbjct: 64  DRLRGLVRRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLCASGRTAEA-----RRVLA 118

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
            C PDV AYN ++   C  G  + AR L+  M +      PD YTY  LI   C  G   
Sbjct: 119 ACEPDVMAYNAMVAGYCVTGQLDAARRLVADMPME-----PDSYTYNTLIRGLCGRG--- 170

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                   R   A  +   ML +G VPDVV Y  L++  CK    ++A++L D+M  KGC
Sbjct: 171 --------RTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGC 222

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
            P+ +TYN  +        +D AIE ++ +   +HG  P + SY  ++  LC A R  +A
Sbjct: 223 APDIITYNVVVNGICQEGRVDDAIEFLKSLP--SHGCEPNTVSYNIVLKGLCTAERWEDA 280

Query: 378 RDFLAELVDGGSVPREYTYKLV 399
              +AE+   G  P   T+ ++
Sbjct: 281 EKLMAEMSQKGYPPNVVTFNML 302



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 129/272 (47%), Gaps = 24/272 (8%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           E TCK  G         K     L +M  +G    + T +V  ++  + +EG V++A+  
Sbjct: 199 EATCKRSG--------YKQAMKLLDEMRAKGCAPDIITYNV--VVNGICQEGRVDDAIEF 248

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              +    C P+  +YN+V+  LC    +  A  L+ +M   G+  PP+V T+ +LIS  
Sbjct: 249 LKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGY--PPNVVTFNMLISFL 306

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           C+ G+           +  A  +   +   G  P+ ++YN ++   CK  +++RA+   +
Sbjct: 307 CRRGL-----------VEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVE 355

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
            M  +GC P+ V+YN+ +       E+D A+E++ ++++     P   SY  +I  L +A
Sbjct: 356 LMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKD-KGCTPVLISYNTVIDGLTKA 414

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           G+  EA + L E+V  G  P   TY  +   L
Sbjct: 415 GKTKEALELLNEMVTKGLQPDIITYSTISSGL 446



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 125/252 (49%), Gaps = 18/252 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            + +MS++G    V T ++  LI  L   GLV  A+    ++ ++ C P+  +YN +++A
Sbjct: 283 LMAEMSQKGYPPNVVTFNM--LISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHA 340

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+    ++A   +E M   G  C PD+ +Y  L+++ C+ G            +  A  
Sbjct: 341 FCKQKKMDRAMAFVELMVSRG--CYPDIVSYNTLLTALCRGG-----------EVDAAVE 387

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L   +  KG  P +++YN +IDG  K  + + ALEL ++M  KG  P+ +TY++      
Sbjct: 388 LLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLC 447

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             + I++AI    K+Q++  G+ P +  Y  I+  LC+      A D    ++  G +P 
Sbjct: 448 REDRIEEAIRAFCKVQDM--GIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPN 505

Query: 393 EYTYKLVCDALN 404
           E TY ++ + L 
Sbjct: 506 ESTYTILIEGLT 517


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 154/338 (45%), Gaps = 32/338 (9%)

Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           R+  K+ + ++   +F+ W  +  +F H+  T   +         V  LW  ++DM +  
Sbjct: 96  REVLKIDVEVHVKIQFFKWAGKKRNFEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSP 155

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
               +  S ++ ++K+LG   +VN+AL+ FY++K  +CRP    YN VI  L + G+  K
Sbjct: 156 CA--IGPSELSEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEK 213

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKY----------------GMQTGCRKAIR- 265
              L  +M   G  C PD  TY+ LIS++ K                 G+Q   +     
Sbjct: 214 VHELYNEMCSEG-HCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTL 272

Query: 266 -------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                   ++ EA +L   M  +  VP V  Y  LI G  K+ R+E A  ++ +M K GC
Sbjct: 273 MGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGC 332

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE-AGRVLEA 377
            P+ V  N+ I      + + +A+E+  +M+ LN   P   +Y  II +L E      EA
Sbjct: 333 KPDVVLMNNLINILGRSDRLKEAVELFEEMRLLN-CTPNVVTYNTIIKSLFEDKAPPSEA 391

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLL 412
             +L  +   G VP  +TY ++ D     N  E+  LL
Sbjct: 392 SSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLL 429



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 121/270 (44%), Gaps = 16/270 (5%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           MGI F  G  V+   + + +M  R    + T  + T LI+ LG+ G V +A   +  M +
Sbjct: 273 MGIYFKLGK-VEEALNLVHEMRMRRC--VPTVYTYTELIRGLGKSGRVEDAYGVYKNMLK 329

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
             C+PDV   N +IN L R     +A  L E+M L    C P+V TY  +I S  +    
Sbjct: 330 DGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRL--LNCTPNVVTYNTIIKSLFEDKAP 387

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                       EA+     M   G VP    Y+ LIDG CKT R+E+AL L ++M++KG
Sbjct: 388 PS----------EASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKG 437

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P    Y S I         + A E+ ++++  N G  +   Y  +I    + GR  EA
Sbjct: 438 FPPCPAAYCSLINSLGKAKRYEAANELFQELKE-NCGSSSVRVYAVMIKHFGKCGRFNEA 496

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAE 407
                E+   G +P  Y Y  +   +  A+
Sbjct: 497 MGLFNEMKKLGCIPDVYAYNALITGMVRAD 526



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 108/247 (43%), Gaps = 27/247 (10%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           +EA +   RMK+    P  + Y+++I+  C+     KA  LLE+M+  GF  PP    Y 
Sbjct: 389 SEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGF--PPCPAAYC 446

Query: 246 ILISSYCKYG-----------MQTGCRKAIRR-------------RIWEANHLFRLMLFK 281
            LI+S  K             ++  C  +  R             R  EA  LF  M   
Sbjct: 447 SLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKL 506

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G +PDV AYN LI G  +   ++ A  LF  M + GC P+  ++N  +   +      +A
Sbjct: 507 GCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRA 566

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           +EM  KM++ +   P + SY  ++  L  AG   EA   + E+   G      TY  + +
Sbjct: 567 MEMFAKMKS-STIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILE 625

Query: 402 ALNAAEE 408
           A+   +E
Sbjct: 626 AVGKVDE 632



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           +S   ++  L   G    A+  F +MK    +PD  +YN V+  L R G F +A  L+++
Sbjct: 548 NSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKE 607

Query: 230 MELPGFRCPPDVYTYTILISSYCK 253
           M   GF    D+ TY+ ++ +  K
Sbjct: 608 MNSKGFEY--DLITYSSILEAVGK 629


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 123/256 (48%), Gaps = 47/256 (18%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-------------- 230
           +++A A F +M+    RPDV+ YN +I+ LC  G ++ A  LL  M              
Sbjct: 271 IDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSA 330

Query: 231 -------------------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
                              E+      PD++TY+ LI+ +C           +  R+ EA
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC-----------MHDRLDEA 379

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
            H+F LM+ K   P+VV YN LI G CK  R+E  +ELF +M+++G + N VTYN+ I+ 
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 439

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                + D A ++ +KM  ++ GVP    +Y+ ++  LC+ G++ +A      L      
Sbjct: 440 LFQAGDCDMAQKIFKKM--VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497

Query: 391 PREYTYKLVCDALNAA 406
           P  YTY ++ + +  A
Sbjct: 498 PDIYTYNIMIEGMCKA 513



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 131/272 (48%), Gaps = 18/272 (6%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            +  M +RG   +LVT  +V   +  L + G ++ AL+   +M++ +   DV  YN +I+
Sbjct: 207 LVDQMVQRGCQPDLVTYGAV---VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIID 263

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+  + + A  L  +ME  G R  PDV+TY  LIS  C YG           R  +A+
Sbjct: 264 GLCKYKHIDDAFALFNKMETKGIR--PDVFTYNSLISCLCNYG-----------RWSDAS 310

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L   M+ +   P+VV ++ LID   K  ++  A +L+D+M K+   P+  TY+S I  +
Sbjct: 311 RLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 370

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
            + + +D+A  M   M +     P   +Y  +I   C+A RV E  +   E+   G V  
Sbjct: 371 CMHDRLDEAKHMFELMIS-KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGN 429

Query: 393 EYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
             TY  +   L  A +  +     +K + DG+
Sbjct: 430 TVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 124/294 (42%), Gaps = 62/294 (21%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI  L      +EA+A   +M Q  C+PD+  Y  V+N LC+ G+ + A  LL+
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLK 244

Query: 229 -----------------------------------QMELPGFRCPPDVYTYTILISSYCK 253
                                              +ME  G R  PDV+TY  LIS  C 
Sbjct: 245 KMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIR--PDVFTYNSLISCLCN 302

Query: 254 YGMQTGCRK----AIRRRI--------------------WEANHLFRLMLFKGFVPDVVA 289
           YG  +   +     I R+I                     EA  L+  M+ +   PD+  
Sbjct: 303 YGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 362

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y+ LI+G C   R++ A  +F+ M  K C PN VTYN+ I+ +     +++ +E+ R+M 
Sbjct: 363 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 422

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                V  + +Y  +I  L +AG    A+    ++V  G  P   TY ++ D L
Sbjct: 423 QRGL-VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 475



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 22/245 (8%)

Query: 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLV 185
           D F N +T   +   F +   V+   +  ++MS+RG  G  VT ++   LI+ L + G  
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT---LIQGLFQAGDC 446

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           + A   F +M      PD+  Y+++++ LC+ G   KA  + E ++    +  PD+YTY 
Sbjct: 447 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS--KMEPDIYTYN 504

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           I+I   CK G           ++ +   LF  +  KG  P+V+ Y  +I G C+    E 
Sbjct: 505 IMIEGMCKAG-----------KVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEE 553

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA--IEMMRKMQNLNHGVPTSSSYTP 363
           A  LF +M + G +P+   YN+ IR  + + + DKA   E++++M++    V  +S+ + 
Sbjct: 554 ADALFREMKEDGTLPDSGCYNTLIR--ARLRDGDKAASAELIKEMRSCGF-VGDASTISM 610

Query: 364 IIHAL 368
           +I+ L
Sbjct: 611 VINML 615



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 18/231 (7%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           RM+  R   D+Y+YN++IN  CR      A  +L +M   G+   PD+ T + L++ YC 
Sbjct: 105 RMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYE--PDIVTLSSLLNGYCH 162

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                       +RI +A  L   M+  G+ PD V +N LI G     +   A+ L D M
Sbjct: 163 -----------SKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQM 211

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            ++GC P+ VTY + +       +ID A+ +++KM+           Y  II  LC+   
Sbjct: 212 VQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVIYNTIIDGLCKYKH 270

Query: 374 VLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRI 420
           + +A     ++   G  P  +TY      +C+    ++   LL + + ++I
Sbjct: 271 IDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKI 321



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 14/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK   +   V E +  F  M Q     +   YN +I  L + G+ + A+ + ++M   G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
              PPD+ TY+IL+   CKYG           ++ +A  +F  +      PD+  YN +I
Sbjct: 461 V--PPDIITYSILLDGLCKYG-----------KLEKALVVFEYLQKSKMEPDIYTYNIMI 507

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G CK  ++E   +LF  ++ KG  PN + Y + I  +      ++A  + R+M+  +  
Sbjct: 508 EGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE-DGT 566

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           +P S  Y  +I A    G    + + + E+   G V    T  +V + L+
Sbjct: 567 LPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLH 616



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 18/214 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A+A   +M +   +PD   +N +I+ L      ++A  L++QM   G  C PD+ TY
Sbjct: 166 ISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRG--CQPDLVTY 223

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             +++  CK G            I  A  L + M       DVV YN +IDG CK   I+
Sbjct: 224 GAVVNGLCKRG-----------DIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHID 272

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYT 362
            A  LF+ M  KG  P+  TYNS I           A  ++  M  + +N   P   +++
Sbjct: 273 DAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKIN---PNVVTFS 329

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +I A  + G+++EA     E++     P  +TY
Sbjct: 330 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 20/238 (8%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           ALA   +M +    PD+   + ++N  C     + A  L++QM   G++  PD  T+  L
Sbjct: 134 ALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK--PDTVTFNTL 191

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I     +G+       +  +  EA  L   M+ +G  PD+V Y  +++G CK   I+ AL
Sbjct: 192 I-----HGL------FLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLAL 240

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
            L   M K     + V YN+ I        ID A  +  KM+    G+ P   +Y  +I 
Sbjct: 241 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKME--TKGIRPDVFTYNSLIS 298

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRKRI 420
            LC  GR  +A   L+ +++    P   T+  + DA        E   L D+ +++ I
Sbjct: 299 CLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 356



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 102/241 (42%), Gaps = 49/241 (20%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A+  F  M Q R  P +  +N +++A+ ++  F+    L E+M+    R   D+Y+Y
Sbjct: 61  LDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQ--NLRISYDLYSY 118

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI+ +C+           R ++  A  +   M+  G+ PD+V  + L++G C + RI 
Sbjct: 119 NILINCFCR-----------RSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRIS 167

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A+ L                            +D+ +EM  K        P + ++  +
Sbjct: 168 DAVAL----------------------------VDQMVEMGYK--------PDTVTFNTL 191

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           IH L    +  EA   + ++V  G  P   TY  V + L    +  L    L+K  +  I
Sbjct: 192 IHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKI 251

Query: 425 E 425
           E
Sbjct: 252 E 252


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 127/277 (45%), Gaps = 27/277 (9%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  +T ++   L+  L  +G   EA      M      PDV+ YN++IN  C+ GN  KA
Sbjct: 247 GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKA 306

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK----AIRR------------- 266
             + E M   G R    V TYT LI +  K G      K    A+RR             
Sbjct: 307 LEIFENMSRRGVRAT--VVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI 364

Query: 267 -------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   I  A  +   M  K   PD V YN L+ G C   R++ A +L D+M ++G  
Sbjct: 365 NSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQ 424

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ VTYN+ I  YS+  ++  A+ +  +M N     PT  +Y  +I  LC+ G+  +A +
Sbjct: 425 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFN-PTLLTYNALIQGLCKNGQGDDAEN 483

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            + E+V+ G  P + TY  + + L   +E ++ D+ L
Sbjct: 484 MVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERL 520



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 117/266 (43%), Gaps = 34/266 (12%)

Query: 113 NKATEFYHWVERFFD-------FFHNEMT---CKEMGIVFARGNNVKGLWDFLKDMSRRG 162
            + TE Y  VE           F +N +    CKE         NVK   +  ++MSRRG
Sbjct: 266 GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKE--------GNVKKALEIFENMSRRG 317

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
               V T   T LI  L ++G V E    F    +   RPD+  YN +IN+    GN ++
Sbjct: 318 VRATVVT--YTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDR 375

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  ++ +ME    R  PD  TY  L+   C  G           R+ EA  L   M  +G
Sbjct: 376 AFEIMGEMEKK--RIAPDDVTYNTLMRGLCLLG-----------RVDEARKLIDEMTERG 422

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PD+V YN LI G      ++ AL + ++M  KG  P  +TYN+ I+      + D A 
Sbjct: 423 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 482

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHAL 368
            M+++M   N   P  S+Y  +I  L
Sbjct: 483 NMVKEMVE-NGITPDDSTYISLIEGL 507



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 26/239 (10%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           ++T+S+  L+  L        A A F  M + R       +N+++  LC  G   +A  L
Sbjct: 81  ISTASLHPLLSALPSA----PAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALEL 136

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-P 285
           L QM        P+  TY  +I+ +C  G           R+  A  + R M  +G + P
Sbjct: 137 LRQMP------RPNAVTYNTVIAGFCSRG-----------RVQAALDIMREMRERGGIAP 179

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEM 344
           +   Y  +I G CK  R++ A+++FD+M  KG + P  V YN+ I  Y    ++D A+  
Sbjct: 180 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 239

Query: 345 MRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             +M  +  GV  T ++Y  ++HAL   GR  EA + + E+   G  P  +TY ++ + 
Sbjct: 240 RDRM--VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILING 296



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 109/271 (40%), Gaps = 55/271 (20%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T++   +++ L   G    AL    +M     RP+   YN VI   C  G    A  ++ 
Sbjct: 114 TTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMR 169

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PDV 287
           +M   G    P+ YTY  +IS +CK G           R+ EA  +F  ML KG V P+ 
Sbjct: 170 EMRERG-GIAPNQYTYGTVISGWCKVG-----------RVDEAVKVFDEMLTKGEVKPEA 217

Query: 288 VAYNCLIDGCCKTYRIERAL-----------------------------------ELFDD 312
           V YN LI G C   +++ AL                                   EL ++
Sbjct: 218 VMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE 277

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEA 371
           M  KG  P+  TYN  I  +     + KA+E+   M     GV  T  +YT +I+AL + 
Sbjct: 278 MGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS--RRGVRATVVTYTALIYALSKK 335

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           G+V E      E V  G  P    Y  + ++
Sbjct: 336 GQVQETDKLFDEAVRRGIRPDLVLYNALINS 366



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 16/170 (9%)

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R P    T+ I++   C  G           +   A  L R M      P+ V YN +I
Sbjct: 108 LRLPLCTTTFNIMLRHLCSAG-----------KPARALELLRQMPR----PNAVTYNTVI 152

Query: 295 DGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
            G C   R++ AL++  +M ++G I PN+ TY + I  +  V  +D+A+++  +M     
Sbjct: 153 AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 212

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P +  Y  +I   C+ G++  A  +   +V+ G      TY L+  AL
Sbjct: 213 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 262


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 133/286 (46%), Gaps = 31/286 (10%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + T ++++ L++ L  +G V +A     R+K+    P ++ YN +IN+LC+ G F++A
Sbjct: 326 GFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEA 385

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCR-------KAIRRRIWEANHL- 274
             L ++M   G  C  DV TY+ILI S+C+ G + T            I+  ++  N L 
Sbjct: 386 ELLFKEMGEKGL-CANDV-TYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLI 443

Query: 275 ---------------FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                          F  M+ KG  P VV+Y  LI G C   ++  A  L+ +M  KG  
Sbjct: 444 NGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIA 503

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN  T+ + I      N +  A  +  +M   N  +P   +Y  +I   C+ G  ++A +
Sbjct: 504 PNTYTFTTLISALFRANRMTDAFRLFDEMLEQNM-MPNEVTYNVMIEGHCKEGNTVKAFE 562

Query: 380 FLAELVDGGSVPREYTYK----LVCDALNAAEEPSLLDDGLRKRIR 421
            L ++V  G VP  YTY+     +C      E    +DD  R+  +
Sbjct: 563 LLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFK 608



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 112/232 (48%), Gaps = 18/232 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
             K+M  +G      T S+  LI      G ++ A+    +M     +  VY YN +IN 
Sbjct: 388 LFKEMGEKGLCANDVTYSI--LIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLING 445

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C++GN + A    ++M   G +  P V +YT LIS YC  G           ++ EA  
Sbjct: 446 HCKLGNLSAAVSFFDEMIDKGLK--PTVVSYTSLISGYCNKG-----------KLHEAFR 492

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L+  M  KG  P+   +  LI    +  R+  A  LFD+M ++  +PN VTYN  I  + 
Sbjct: 493 LYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHC 552

Query: 334 VVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
                 KA E++ +M  +  G VP + +Y P+I +LC  GRV EA+ F+ +L
Sbjct: 553 KEGNTVKAFELLNQM--VQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDL 602



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 17/226 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I    + G V +A   +  M    C P++  Y  +IN LC+ G  +KA  L ++M +
Sbjct: 685 TSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLV 744

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
                 P+  TY   +    + G            + +A  L   ML KG + + V+YN 
Sbjct: 745 S--NSTPNHVTYCCFLDHLAREG-----------SMEKAVQLHNDML-KGLLANTVSYNI 790

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+ G CK  R+E A +L D+M      P+ +TY++ I        +D AIE    M  LN
Sbjct: 791 LVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTM--LN 848

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            G+ P + +Y  +I+  C AG + +A +   +++  G  P + T+K
Sbjct: 849 KGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHK 894



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 113/253 (44%), Gaps = 20/253 (7%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG + +AL     M +     D+  Y V+I+   +  + +    LL+ M     R  PD
Sbjct: 623 KEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLR--PD 680

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
              YT +I  Y K G     +KA    IW+      +M+ +G  P++V Y  LI+  CK 
Sbjct: 681 KVIYTSMIDGYSKAG---SVKKAFG--IWD------IMIDEGCTPNIVTYTTLINELCKA 729

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
             +++A  L+ +M      PN VTY  F+ + +    ++KA+++   M  L   +  + S
Sbjct: 730 GLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDM--LKGLLANTVS 787

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGL 416
           Y  ++   C+ GRV EA   L E++D    P   TY  +    C   N        D  L
Sbjct: 788 YNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTML 847

Query: 417 RKRIR-DGIEYRF 428
            K ++ D + Y F
Sbjct: 848 NKGLKPDTLAYNF 860



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 114/239 (47%), Gaps = 16/239 (6%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           + +++     LI+   +E  + +++  F  M+Q    P V     V+N L ++   +   
Sbjct: 154 DFISSLGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVL 213

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            L  ++   G R  PD+Y Y  +I S+C+       ++ I+R   E++ L          
Sbjct: 214 VLFGEILSMGIR--PDIYIYVAVIRSFCELKNFAKAKEMIQR--MESSDL---------- 259

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
            +VV YN LI G CK  R+  A+E+ + + +KG   + VTY + +     V E +    +
Sbjct: 260 -NVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGV 318

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           M +M  L   VPT ++ + ++  L   G+V++A D +  +   G++P  + Y  + ++L
Sbjct: 319 MDEMIELGF-VPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSL 376



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 25/230 (10%)

Query: 142 FARGNNVK---GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
           +++  +VK   G+WD + D      G      + T LI  L + GL+++A   +  M   
Sbjct: 691 YSKAGSVKKAFGIWDIMID-----EGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVS 745

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
              P+   Y   ++ L R G+  KA  L   M L G     +  +Y IL+  +CK G   
Sbjct: 746 NSTPNHVTYCCFLDHLAREGSMEKAVQLHNDM-LKGLL--ANTVSYNILVRGFCKLG--- 799

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                   R+ EA  L   M+     PD + Y+ +I  CC+   ++ A+E +D M  KG 
Sbjct: 800 --------RVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGL 851

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
            P+ + YN  I    +  E+ KA E+   M  +  GV P  +++  + H 
Sbjct: 852 KPDTLAYNFLIYGCCIAGELGKAFELRDDM--IRRGVKPNQATHKSLSHG 899



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 8/196 (4%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           ++ ++I+AL     F  A  LL+ + L G   P +V+   +     C +    G    I+
Sbjct: 107 SFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLDCFEKCDFISSLGFDLLIQ 166

Query: 266 -----RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                +R++++  +FRLM     +P V     +++G  K  R++  L LF ++   G  P
Sbjct: 167 SYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRP 226

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +   Y + IR +  +    KA EM+++M++ +  V     Y  +IH LC+  RV EA + 
Sbjct: 227 DIYIYVAVIRSFCELKNFAKAKEMIQRMESSDLNVVV---YNVLIHGLCKNKRVWEAVEI 283

Query: 381 LAELVDGGSVPREYTY 396
              L+  G    E TY
Sbjct: 284 KNGLIQKGLTASEVTY 299



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 16/242 (6%)

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           K+M +R     +       LI  L +   V EA+     + Q         Y  ++  LC
Sbjct: 248 KEMIQRMESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLC 307

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
           +V  F     ++++M   GF     V T   L S      +  G R+  + ++ +A  L 
Sbjct: 308 KVQEFEVGAGVMDEMIELGF-----VPTEAALSS------LVEGLRR--KGKVVDAFDLV 354

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             +   G +P +  YN LI+  CK  + + A  LF +M +KG   N VTY+  I  +   
Sbjct: 355 NRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRR 414

Query: 336 NEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
            ++D AI  + KM  +  G+  T   Y  +I+  C+ G +  A  F  E++D G  P   
Sbjct: 415 GKLDTAIHFLGKM--IMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVV 472

Query: 395 TY 396
           +Y
Sbjct: 473 SY 474


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 143/318 (44%), Gaps = 21/318 (6%)

Query: 90  IANNVLVLGPAAYRDPQKVTL--GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNN 147
           + N   VLG   YR         G  +A E +        F  +   C  + +   R ++
Sbjct: 119 MVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDD 178

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           +   +   + MS+    E    +SVT   LI  L E G + EA      M +  C+P   
Sbjct: 179 LGEAFRVFEKMSKE---ESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTR 235

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            Y V+I A C +G  +KA  +L++M      C P+V+TYTILI   C+ G          
Sbjct: 236 TYTVLIKAKCDIGMTDKAMKMLDEMATKA--CVPNVHTYTILIDRLCREG---------- 283

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            +I EAN +FR ML  G  P ++ +N LI+G CK   +  A +L   M K  C PN  TY
Sbjct: 284 -KIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTY 342

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           N  +     V++  KA  ++R++ + N  +P   +Y  ++   C+ G++  A +    + 
Sbjct: 343 NELMEGLCRVSKSYKAFLLLRRVVD-NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMN 401

Query: 386 DGGSVPREYTYKLVCDAL 403
             G  P  +T+  + D L
Sbjct: 402 SAGLEPDGFTFTALIDGL 419



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 116/271 (42%), Gaps = 52/271 (19%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L T  +  C +  LG++  +NEA A   +M ++   P V  + ++I   CR G    +  
Sbjct: 476 LTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 535

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           +LE+M+  G  C P+VYTYTI+I+  C  G           R+ EA  +   M   G  P
Sbjct: 536 MLERMKQAG--CSPNVYTYTIIINGLCNNG-----------RVEEAETILFSMSSFGVSP 582

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN--------- 336
           +   Y  L+    K  R++RA ++   M K GC PN   Y++ +  + + N         
Sbjct: 583 NHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALS 642

Query: 337 ----------------------------EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
                                       ++D A+++  +++    GVPT   Y  ++  L
Sbjct: 643 STGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKC--GVPTEDLYNFLVVGL 700

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           C+ GR++EA     ++V  G  P +    ++
Sbjct: 701 CKEGRIIEADQLTQDMVKHGLFPDKAISSII 731



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 29/262 (11%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           +T + T LIK   + G+ ++A+     M    C P+V+ Y ++I+ LCR G   +A  + 
Sbjct: 233 STRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVF 292

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG-----------MQTG-CRKAIR---------- 265
            +M   G    P + T+  LI+ YCK G           M+ G C+  IR          
Sbjct: 293 RKMLKHGL--CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLC 350

Query: 266 --RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              + ++A  L R ++  G +PD V YN L+DG CK  ++  A  +F+ MN  G  P+  
Sbjct: 351 RVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGF 410

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLA 382
           T+ + I     +  +++A  ++  M  +  G+     ++T +I   C+ G+  +      
Sbjct: 411 TFTALIDGLCKLGRLEQANGILGSM--VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFE 468

Query: 383 ELVDGGSVPREYTYKLVCDALN 404
            +V+   +   +T+    DAL 
Sbjct: 469 NMVENRCLTTAHTFNCFLDALG 490



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 16/203 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN++++  C+ G  N A  +   M   G    PD +T+T LI   CK G      
Sbjct: 372 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLE--PDGFTFTALIDGLCKLG------ 423

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +AN +   M+ KG   D V +  LIDG CK  + +    LF++M +  C+  
Sbjct: 424 -----RLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTT 478

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDF 380
             T+N F+       ++++A  M+ KM  + +G VP+  ++T +I   C AG    +   
Sbjct: 479 AHTFNCFLDALGKDYKLNEANAMLGKM--MKYGLVPSVVTHTILIEGHCRAGETALSLKM 536

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L  +   G  P  YTY ++ + L
Sbjct: 537 LERMKQAGCSPNVYTYTIIINGL 559



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 14/240 (5%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG L    +   L+    +EG +N A   F  M      PD + +  +I+ LC++G   +
Sbjct: 368 NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 427

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  +L  M   G     D  T+T LI  +CK G           +  +   LF  M+   
Sbjct: 428 ANGILGSMVKKGI--SLDEVTFTALIDGHCKIG-----------KAKDVCFLFENMVENR 474

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
            +     +NC +D   K Y++  A  +   M K G +P+ VT+   I  +    E   ++
Sbjct: 475 CLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSL 534

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +M+ +M+      P   +YT II+ LC  GRV EA   L  +   G  P  +TY ++  A
Sbjct: 535 KMLERMKQAGCS-PNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKA 593



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 116/274 (42%), Gaps = 67/274 (24%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           GE  L   +L    RMKQ  C P+VY Y ++IN LC  G   +A  +L  M    F   P
Sbjct: 528 GETAL---SLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSM--SSFGVSP 582

Query: 240 DVYTYTILISSYCKYG------------MQTGCR-----------------KAIRRRIWE 270
           + +TY +L+ ++ K G            ++ GC+                  AI  R   
Sbjct: 583 NHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALS 642

Query: 271 A--------------------NHLFRLM-----------LFKGFVPDVVAYNCLIDGCCK 299
           +                    +H+FRLM           + K  VP    YN L+ G CK
Sbjct: 643 STGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCK 702

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             RI  A +L  DM K G  P++   +S I +Y    + D  +E M+ + + N  VP+ +
Sbjct: 703 EGRIIEADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDNCLEFMKLVLD-NKFVPSFA 760

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           SY  +IH L   GRV EA+  +++LV    +  E
Sbjct: 761 SYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEE 794



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 4/145 (2%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           ++R M+ +GFV   + Y  +++  CK   ++ A      + + G   +     S +    
Sbjct: 115 VYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANC 174

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             +++ +A  +  KM       P S +Y+ +IH LCEAGR+ EA     E+V+ G  P  
Sbjct: 175 RRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPST 234

Query: 394 YTYKLV----CDALNAAEEPSLLDD 414
            TY ++    CD     +   +LD+
Sbjct: 235 RTYTVLIKAKCDIGMTDKAMKMLDE 259


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 134/294 (45%), Gaps = 34/294 (11%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
            + + V  L+D   DM  RG    V T +V  +I  L + G  NEAL    +M++  C P
Sbjct: 146 GKMDQVMMLYD---DMLVRGLQPNVYTYNV--IINSLSKSGKANEALGFLKQMEKVGCVP 200

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------- 255
           +V  Y+ +I+  C  G  ++AR + + M   G  C P+VYTYT L++ YCK         
Sbjct: 201 NVVNYSTLIDGYCLRGQMDEARSVFDLMVSKG--CTPNVYTYTSLMNGYCKIERIEEAVQ 258

Query: 256 -MQTGCRKAI----------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
            +    RK +                  R   A  LFR +   G  P+++ Y  L+DG C
Sbjct: 259 LLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLC 318

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PT 357
           K   +E A  LF +M +    PN V Y   I       +I    E+  ++  ++ G+ P 
Sbjct: 319 KHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRL--IDEGLKPN 376

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
             +YT ++ ALC+ G ++EA     ++ + G  P +  Y ++       ++PS+
Sbjct: 377 VYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSM 430



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 122/256 (47%), Gaps = 20/256 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S++ LI        V+  L+   ++ +    P +  +  ++N LC  G  ++   L + M
Sbjct: 99  SLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDM 158

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G +  P+VYTY ++I+S  K G           +  EA    + M   G VP+VV Y
Sbjct: 159 LVRGLQ--PNVYTYNVIINSLSKSG-----------KANEALGFLKQMEKVGCVPNVVNY 205

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + LIDG C   +++ A  +FD M  KGC PN  TY S +  Y  +  I++A++++   + 
Sbjct: 206 STLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLD--ET 263

Query: 351 LNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NA 405
           L  G VP   ++T II  LC AGR L A+     +   G  P   TY ++ D L    N 
Sbjct: 264 LRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNL 323

Query: 406 AEEPSLLDDGLRKRIR 421
            E  +L  +  R  ++
Sbjct: 324 EEAFALFQEMQRSTVK 339



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 116/237 (48%), Gaps = 18/237 (7%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++ALA+F  M   +  P +  ++ + +++ R+G++    +L +++E  G     D+++ +
Sbjct: 44  DDALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIE--QDIHSLS 101

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           ILI+ +C              R+     +   +L  G  P +V +  L++G C   ++++
Sbjct: 102 ILINCFCHL-----------HRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQ 150

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
            + L+DDM  +G  PN  TYN  I   S   + ++A+  +++M+ +   VP   +Y+ +I
Sbjct: 151 VMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVG-CVPNVVNYSTLI 209

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRK 418
              C  G++ EAR     +V  G  P  YTY  +    C      E   LLD+ LRK
Sbjct: 210 DGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRK 266



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+  L +EGL+ EA   F +M++  C PD  AYNV+I    +  + + AR L+E+M  
Sbjct: 381 TALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVN 440

Query: 233 PGF 235
            GF
Sbjct: 441 RGF 443


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 118/251 (47%), Gaps = 16/251 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L DM  RG G          +I     +G+V+ AL     M++     DVY YN +   
Sbjct: 294 LLADMQGRGVGH--NQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACG 351

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LCRV    +A+ LL  M   G   PP+  TYT LIS +CK G            + EA  
Sbjct: 352 LCRVNRMAEAKTLLHIMIEKGV--PPNYVTYTTLISIHCKEG-----------DMVEARR 398

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LFR M  KG +P VV YN ++DG  K   I  A     +M KKG +P+  TY S +  + 
Sbjct: 399 LFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHC 458

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           V  ++D A+++  +M++     P   +YT +I  L + GR  EA     +++  G  P +
Sbjct: 459 VNGKVDVALKLFEEMKHRGT-EPNVVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDD 517

Query: 394 YTYKLVCDALN 404
             Y  +  +L+
Sbjct: 518 SLYSALVGSLH 528



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 124/297 (41%), Gaps = 53/297 (17%)

Query: 142 FARGNNVKGLWDFLKDMSRRGN--GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           F +   V      L +M R G     L   S + C ++   ++  V E L     M+   
Sbjct: 142 FCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVR-RKDDARVQELLEI---MENGG 197

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
               V  Y +++++L   G+ +K   ++++M+        DVY YT +I++YC+ G    
Sbjct: 198 IEATVGTYTILVDSLSTAGDISKVEAVVDEMKAK--NVAGDVYLYTAVINAYCRAG---- 251

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
               +RR    A+ +F   +  G  P+   Y  LI+G CK  ++E A  L  DM  +G  
Sbjct: 252 ---NVRR----ASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVG 304

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN--------------------------- 352
            N++ +N+ I  Y     +D A+++   M+ +                            
Sbjct: 305 HNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTL 364

Query: 353 ------HGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
                  GVP +  +YT +I   C+ G ++EAR    E+   G++P   TY ++ D 
Sbjct: 365 LHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDG 421



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 34/149 (22%)

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           +A + ++DG CK+ R++ A  L D+M + G   N + YNS +  Y    +  +  E++  
Sbjct: 133 LAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEI 192

Query: 348 MQN------------LNHGVPTSSS----------------------YTPIIHALCEAGR 373
           M+N            L   + T+                        YT +I+A C AG 
Sbjct: 193 MENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGN 252

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDA 402
           V  A +   E V  G  P E TY ++ + 
Sbjct: 253 VRRASEVFDECVGNGIEPNERTYGVLING 281


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 130/270 (48%), Gaps = 16/270 (5%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           MGI F  G  V+     +K+M  R    L+T  + T LI+ LG+ G V +A  T+  M +
Sbjct: 266 MGIYFKVGK-VEEALGLVKEM--RARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLK 322

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
             C+PDV   N +IN L R  +   A  L ++M+L    C P+V TY  +I S  +    
Sbjct: 323 DGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKL--LNCAPNVVTYNTIIKSLFE---- 376

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                  +  + EA+  F  M   G VP    Y+ LIDG CKT R+E+AL L ++M++KG
Sbjct: 377 ------AKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKG 430

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P    Y S I    V    D A E+ ++++  N G  ++  Y  +I    + GR+ EA
Sbjct: 431 FPPCPAAYCSLINTLGVAKRYDVANELFQELKE-NCGCSSARVYAVMIKHFGKCGRLNEA 489

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAE 407
            +   E+   G  P  Y Y  +   +  AE
Sbjct: 490 INLFNEMKKLGCTPDVYAYNALMTGMVRAE 519



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 148/333 (44%), Gaps = 29/333 (8%)

Query: 95  LVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDF 154
           L + P   R+  K+ + ++   +F+ W  +  +F H+  T   +            +W  
Sbjct: 81  LKVDPRLVREILKIDVEVSVKIQFFKWAGKRRNFEHDSTTYMALIRCLDEHRMFGEVWKT 140

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           ++DM +      +  + ++ ++++LG+  +VN AL+ FY++K  +CRP    YN +I  L
Sbjct: 141 IQDMVKGSCA--MAPAELSEIVRILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIILML 198

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY----------------GMQT 258
            + G+  K   L  +M      C PD  TY+ LIS++ K                 G+Q 
Sbjct: 199 MQEGHHEKVHELYNEM-CSEVHCFPDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQP 257

Query: 259 GCRKAIR--------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
             +             ++ EA  L + M  +  +  V  Y  LI G  K+ R+E A   +
Sbjct: 258 TAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTY 317

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
            +M K GC P+ V  N+ I      N +  AI++  +M+ LN   P   +Y  II +L E
Sbjct: 318 KNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLN-CAPNVVTYNTIIKSLFE 376

Query: 371 AGRVL-EARDFLAELVDGGSVPREYTYKLVCDA 402
           A   L EA  +   +   G VP  +TY ++ D 
Sbjct: 377 AKAPLSEASSWFERMKKDGIVPSSFTYSILIDG 409



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 131/298 (43%), Gaps = 30/298 (10%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE-EGLVNEALATFYRMKQFR 199
           +  R N+++       +M        V T +   +IK L E +  ++EA + F RMK+  
Sbjct: 338 ILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNT--IIKSLFEAKAPLSEASSWFERMKKDG 395

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS--------- 250
             P  + Y+++I+  C+     KA  LLE+M+  GF  PP    Y  LI++         
Sbjct: 396 IVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGF--PPCPAAYCSLINTLGVAKRYDV 453

Query: 251 ----YCKYGMQTGCRKA------IRR-----RIWEANHLFRLMLFKGFVPDVVAYNCLID 295
               + +     GC  A      I+      R+ EA +LF  M   G  PDV AYN L+ 
Sbjct: 454 ANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMT 513

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G  +  R++ A  LF  M + GC P+  ++N  +   +       A+EM  KM+N +   
Sbjct: 514 GMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKN-STIK 572

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
           P   S+  I+  L  AG   EA   + E+   G      TY  + +A+   ++  +++
Sbjct: 573 PDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQYDLITYSSILEAVGKVDDCKMVE 630


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 20/251 (7%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           ++G + E    F  M +   +P+V  Y  +++  C V   NKA  +   M   G    PD
Sbjct: 260 KDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVN--PD 317

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
             +Y I+I+ +CK            +++ EA +LF+ M  K  +P+VV Y  LIDG CK+
Sbjct: 318 TQSYNIMINGFCKI-----------KKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKS 366

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN------LNHG 354
            +I  AL+L D+M+ +G  P+ +TY+S +      +++DKAI ++ K+++         G
Sbjct: 367 GKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKG 426

Query: 355 VPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
                 +YT +I   C  G   EA   L+++ D G +P   TY+++  +L   +E  + +
Sbjct: 427 YNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAE 486

Query: 414 DGLRKRIRDGI 424
             LR+ I  G+
Sbjct: 487 KLLREMIARGL 497



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 16/234 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L + G    AL    R+     +P+V  YN +I+++C+V   N+A  L  +M
Sbjct: 145 SYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM 204

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PDV TY+ LIS +   G           ++ +A  LF  M+ +   PDV  +
Sbjct: 205 VSEGIS--PDVVTYSALISGFFIVG-----------KLKDAIDLFNKMILENIKPDVYTF 251

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L+DG CK  +++    +F  M K+G  PN VTY S +  Y +V +++KA  +   M  
Sbjct: 252 NILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMA- 310

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              GV P + SY  +I+  C+  +V EA +   ++     +P   TY  + D L
Sbjct: 311 -QGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGL 363



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 106/219 (48%), Gaps = 10/219 (4%)

Query: 189 LATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           +++F R+  Q    P ++ +  ++ +L ++  ++ A  L  QMEL G     ++ T  IL
Sbjct: 44  VSSFNRLLHQKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGI--ASNLVTLNIL 101

Query: 248 ISSYCKYG---MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           I+ + + G   +       I ++ ++ N +    L KG    V +Y  LI+G CK  +  
Sbjct: 102 INCFSQLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLKV-SYGTLINGLCKVGQAR 160

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            AL+L   ++ K   PN V YN+ I     V  +++A ++  +M  ++ G+ P   +Y+ 
Sbjct: 161 AALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEM--VSEGISPDVVTYSA 218

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +I      G++ +A D   +++     P  YT+ ++ D 
Sbjct: 219 LISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDG 257



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 21/155 (13%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL----- 227
           T LI  L + G ++ AL     M      PD+  Y+ +++ALC+    +KA  LL     
Sbjct: 357 TSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKD 416

Query: 228 ---EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
              E + + G+    DVY YT++I  +C  G+             EA  L   M   G +
Sbjct: 417 QVFEDLFVKGYNL--DVYAYTVMIQGFCVKGL-----------FNEALALLSKMEDNGRI 463

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           PD   Y  +I    K    + A +L  +M  +G +
Sbjct: 464 PDAKTYEIIILSLFKKDENDMAEKLLREMIARGLL 498


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 131/270 (48%), Gaps = 18/270 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  N     D L+ M  R     V T ++  +I  L ++G +++AL+ F  M+    + +
Sbjct: 242 KSGNTASALDLLRKMEHRKIKPHVVTYTI--IIDNLCKDGRLDDALSFFSEMETKGIKAN 299

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V+ YN +I + C  G ++    LL  M     +  P+V T++ LI S  K G        
Sbjct: 300 VFTYNSLIGSFCSFGRWDDGAQLLRDMITR--KITPNVVTFSALIDSLVKEG-------- 349

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              ++ EA  L+  M+ +G  P+ + YN LI G C   R++ A ++ D M  KGC P+  
Sbjct: 350 ---KLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIW 406

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           TYN  I  +    ++D  + + RKM +L   +  + +Y+ +I   C++ +++ A+    E
Sbjct: 407 TYNILINGFCKAKQVDDGMRLFRKM-SLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQE 465

Query: 384 LVDGGSVPREYTYKLVCDAL--NAAEEPSL 411
           +V  G  P   TY ++ D L  N   E +L
Sbjct: 466 MVSQGVHPGIMTYAILLDGLCDNGELEEAL 495



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 131/285 (45%), Gaps = 30/285 (10%)

Query: 150 GLWD----FLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G WD     L+DM +R+    +VT S+   LI  L +EG + EA   +  M      P+ 
Sbjct: 314 GRWDDGAQLLRDMITRKITPNVVTFSA---LIDSLVKEGKLTEAKDLYNEMITRGIEPNT 370

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             YN +I  LC     ++A  +++ M   G  C PD++TY ILI+ +CK           
Sbjct: 371 ITYNSLIYGLCNDKRLDEANQMMDLMVSKG--CDPDIWTYNILINGFCK----------- 417

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
            +++ +   LFR M  +G + D V Y+ LI G C++ ++  A ++F +M  +G  P  +T
Sbjct: 418 AKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMT 477

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQ----NLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           Y   +       E+++A+ ++ +M      L+ G+     Y  IIH +C A +V +A   
Sbjct: 478 YAILLDGLCDNGELEEALGILDQMHKCKMELDIGI-----YNIIIHGMCNANKVDDAWSL 532

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
              L   G      +Y ++   L      S  D   RK   DG E
Sbjct: 533 FCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYE 577



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 19/234 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+EA+    RM    C+P+ + Y  ++N +C+ GN   A  LL +ME    +  P V TY
Sbjct: 211 VSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIK--PHVVTY 268

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           TI+I + CK G           R+ +A   F  M  KG   +V  YN LI   C   R +
Sbjct: 269 TIIIDNLCKDG-----------RLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWD 317

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
              +L  DM  +   PN VT+++ I       ++ +A ++  +M  +  G+ P + +Y  
Sbjct: 318 DGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEM--ITRGIEPNTITYNS 375

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           +I+ LC   R+ EA   +  +V  G  P  +TY ++ +    A++   +DDG+R
Sbjct: 376 LIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQ---VDDGMR 426



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 27/235 (11%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++A+A F  M + R  P V  +N +   L R   ++    L +QMEL G     D+YT  
Sbjct: 72  DDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGI--AYDLYTLN 129

Query: 246 ILISSYC---KYGMQTGCRKAIRR---------------------RIWEANHLFRLMLFK 281
           I+I+ +C   K G        I +                     R++EA  L   M+  
Sbjct: 130 IMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLS 189

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
             VPD++  N +++G C   R+  A++L   M   GC PN+ TY   +           A
Sbjct: 190 QHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASA 249

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           ++++RKM++     P   +YT II  LC+ GR+ +A  F +E+   G     +TY
Sbjct: 250 LDLLRKMEH-RKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTY 303



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 21/235 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V       + MS RG   +  T + + LI+   +   +  A   F  M      
Sbjct: 415 FCKAKQVDDGMRLFRKMSLRG--MIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVH 472

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP--DVYTYTILISSYCKYGMQTG 259
           P +  Y ++++ LC  G   +A  +L+QM     +C    D+  Y I+I   C       
Sbjct: 473 PGIMTYAILLDGLCDNGELEEALGILDQMH----KCKMELDIGIYNIIIHGMCN------ 522

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  ++ +A  LF  +  KG   D+ +YN ++ G CK   +  A  LF  M + G  
Sbjct: 523 -----ANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYE 577

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           P+  TYN+ IR +   N+I  +++++ +M+    G  + +S   I+  +  +G +
Sbjct: 578 PDGCTYNTLIRAHLRGNDITTSVQLIEEMKRC--GFSSDASTVKIVMDMLSSGEL 630



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 11/163 (6%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L + M  KG   D+   N +I+  C+  ++  A      + K G  PN VT+N+ +    
Sbjct: 112 LCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLC 171

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           +   + +A+E++  M  L+  VP   +   I++ LC   RV EA D +A ++  G  P +
Sbjct: 172 LEGRVFEAVELVDCMV-LSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQ 230

Query: 394 YTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKP 436
           +TY  + + +  +   +   D LRK     +E+R     K+KP
Sbjct: 231 FTYGPILNRMCKSGNTASALDLLRK-----MEHR-----KIKP 263



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 1/156 (0%)

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A  LF+ ML    +P V+ +N L     +T + +  L L   M  KG   +  T N  I
Sbjct: 73  DAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMI 132

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             +    ++  A   M K+  L +  P + ++  +++ LC  GRV EA + +  +V    
Sbjct: 133 NCFCRRRKLGFAFSAMGKIFKLGYE-PNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQH 191

Query: 390 VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           VP   T   + + L   +  S   D + + + +G +
Sbjct: 192 VPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQ 227


>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
          Length = 477

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 114/232 (49%), Gaps = 15/232 (6%)

Query: 168 TTSSVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           + +S+  LIK L +  G ++ AL  F  M    C P  Y Y  +I  LCR+G   +A+ L
Sbjct: 154 SVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKEL 213

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
            ++ME     C P V TY  LI   C+            + +  A  L   M  KG  P+
Sbjct: 214 FKEMETKA--CSPTVVTYXSLIHGLCQ-----------SKDLDSAIRLLEEMASKGIKPN 260

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           V  Y+ L+DG CK+    RALEL D M  +  +PN +TY++ +       ++ +A+E++ 
Sbjct: 261 VFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILD 320

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           +M+ L    P +  Y  II   C+  +  EA +FL E+V GG  P   T+ L
Sbjct: 321 RMK-LQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSL 371



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 33/255 (12%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L   G + EA   F  M+   C P V  Y  +I+ LC+  + + A  LLE+M   G
Sbjct: 197 LIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKG 256

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAI-----RR-------------------RIWE 270
            +  P+V+TY+ L+  +CK G  +   + +     RR                   ++ E
Sbjct: 257 IK--PNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQE 314

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  +   M  +G  PD   Y  +I G C   +   A    D+M   G  PNR+T++  +R
Sbjct: 315 AVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVR 374

Query: 331 YYSVV------NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            +++V         ++A ++   M+     +  + ++  +++  C  G + +A   + E+
Sbjct: 375 IHNIVVQGLCTEHPNRAFQLYLSMRTRGISID-AKTFDSLVNYFCNKGDLHKAAHLVDEM 433

Query: 385 VDGGSVPREYTYKLV 399
           V  G +P E T+  V
Sbjct: 434 VLDGCIPDEXTWNAV 448



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 94/218 (43%), Gaps = 15/218 (6%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           +A+  F +MK++ C P   +Y  V   L        A      M   G   PP V +  +
Sbjct: 103 DAVRVFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGI--PPSVASLNV 160

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI + CK    +G   A  R       +FR M  +G  P    Y  LI G C+  +I  A
Sbjct: 161 LIKALCK---NSGTMDAALR-------IFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEA 210

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
            ELF +M  K C P  VTY S I       ++D AI ++ +M   + G+ P   +Y+ ++
Sbjct: 211 KELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMA--SKGIKPNVFTYSSLM 268

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              C++G    A + L  +V    +P   TY  +   L
Sbjct: 269 DGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGL 306



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 10/172 (5%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           +SRR    ++T S+   L+  L +EG + EA+    RMK    RPD   Y  +I+  C +
Sbjct: 288 VSRRHLPNMITYST---LVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDI 344

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
             F++A   L++M L G    P+  T+++ +  +    +Q  C +   R    A  L+  
Sbjct: 345 CKFHEAANFLDEMVLGGI--SPNRLTWSLHVRIH-NIVVQGLCTEHPNR----AFQLYLS 397

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           M  +G   D   ++ L++  C    + +A  L D+M   GCIP+  T+N+ +
Sbjct: 398 MRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIPDEXTWNAVV 449


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 127/266 (47%), Gaps = 20/266 (7%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N V+     +  + RRG    V T   T LIK L  E  ++EA   F RM++  C P+V 
Sbjct: 140 NRVREGLSAMAGIMRRGYIPDVVT--YTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVV 197

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPG-----FRCPPDVYTYTILISSYCKYGMQTGC 260
            Y  +I  LCR GN N A  L ++M L G       C P++++Y I+I   CK G     
Sbjct: 198 TYGTLIKGLCRTGNINLALKLHQEM-LNGTSPYAINCKPNIFSYNIIIDELCKIG----- 251

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 +  EA  LF  M+ +G  PDVV ++ LID  CK   +  A +  + M  +G +P
Sbjct: 252 ------KWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVP 305

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +  T+ S I  + +V ++D A E+   M +  +  P   SYT +I+  C+   V EA   
Sbjct: 306 DLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYE-PDVISYTVLIYGYCKTFNVEEAMKL 364

Query: 381 LAELVDGGSVPREYTYKLVCDALNAA 406
             E++  G  P   T+ ++   L  A
Sbjct: 365 YNEMLRVGKWPDMKTFCVLLKGLFLA 390



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 18/206 (8%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
            + ++N+++ AL ++ ++++   L ++M L G    P+ +T  ILI+  C          
Sbjct: 90  SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLS--PNFFTLNILINCLCNV-------- 139

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               R+ E       ++ +G++PDVV Y  LI G C  +RI  A  LF  M K GC PN 
Sbjct: 140 ---NRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNV 196

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-----PTSSSYTPIIHALCEAGRVLEA 377
           VTY + I+       I+ A+++ ++M N          P   SY  II  LC+ G+  EA
Sbjct: 197 VTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEA 256

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
           +    E+VD G  P   T+  + D L
Sbjct: 257 KRLFNEMVDQGVRPDVVTFSALIDTL 282



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 22/233 (9%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L+  L +    ++  + + +M      P+ +  N++IN LC V    +    +  +
Sbjct: 93  SFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGI 152

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G+   PDV TYT LI   C           +  RI EA  LF  M   G  P+VV Y
Sbjct: 153 MRRGY--IPDVVTYTSLIKGLC-----------MEHRISEATRLFIRMQKLGCWPNVVTY 199

Query: 291 NCLIDGCCKTYRIERALELFDDMNKK------GCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
             LI G C+T  I  AL+L  +M          C PN  +YN  I     + +  +A  +
Sbjct: 200 GTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRL 259

Query: 345 MRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             +M  ++ GV P   +++ +I  LC+ G V+EA+ FL  ++  G VP  +T+
Sbjct: 260 FNEM--VDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTF 310



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 130/302 (43%), Gaps = 45/302 (14%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVT---CLIKVLGEEGLVNEALA 190
           CKE  ++ A+         FL+ M  RG   +L T +S+    CL+      G ++ A  
Sbjct: 283 CKEGMVIEAK--------KFLETMMLRGIVPDLFTFTSLIEGFCLV------GDLDSAKE 328

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            F  M      PDV +Y V+I   C+  N  +A  L  +M   G    PD+ T+ +L+  
Sbjct: 329 LFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKW--PDMKTFCVLLKG 386

Query: 251 YCKYGMQTGCRK--------AIRRRIW----------------EANHLFRLMLFKGFVPD 286
               G     +K        A+ + ++                EA  LF  +       D
Sbjct: 387 LFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLD 446

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           + ++NCLIDG CK  ++E A ELF+ ++++G  P+ VTY   I  +    ++D A  ++ 
Sbjct: 447 IESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNA-NILF 505

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           +M   N   P   +Y+ ++H   +  ++ E    L +++          Y +V D ++  
Sbjct: 506 QMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIVEDMVSKD 565

Query: 407 EE 408
           E+
Sbjct: 566 EK 567


>gi|296084709|emb|CBI25851.3| unnamed protein product [Vitis vinifera]
          Length = 528

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 136/281 (48%), Gaps = 18/281 (6%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
           F+ W      + H+     +   +F    N + + D ++  + R  G +V+  +   ++ 
Sbjct: 82  FFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIE--AYRVEGTVVSVKTFNVVLH 139

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
           +L E  L +EAL    +M +F  R D  AYN VI   C  G+ + A  L+++M L     
Sbjct: 140 LLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAAGLMKEMGLIDLY- 198

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            P++ TY  +I  +C  G           R+ +A  LF++M   G  P+VV Y  ++DG 
Sbjct: 199 -PNMITYVTMIKGFCNVG-----------RLEDACKLFKVMKGHGCSPNVVVYTVILDGV 246

Query: 298 CKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           C+   +ERALEL  +M K+   C PN VTY S I+      ++ +A+E++ +M+      
Sbjct: 247 CRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCA- 305

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           P   + + ++   C  GRV EA   + ++V GG+V     Y
Sbjct: 306 PNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECY 346



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 12/209 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +IK     G + +A   F  MK   C P+V  Y V+++ +CR G+  +A  LL +ME   
Sbjct: 207 MIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEKES 266

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+V TYT +I S C+ G           ++ EA  +   M   G  P+ V  + L+
Sbjct: 267 GDCSPNVVTYTSMIQSCCEKG-----------KLMEALEILDRMRACGCAPNRVTVSILM 315

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   R+E A +L D +   G +     Y+S I        + +A ++ R+M   N  
Sbjct: 316 KGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLVGNKNLQEAEKLFRRMLA-NAV 374

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAE 383
            P   +   +I ALC  GRVL+      E
Sbjct: 375 KPDGLACGTLIKALCLEGRVLDGFHLFDE 403


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 39/310 (12%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK L      +EAL     M++   +P+++ Y V+I++LC    F KAR LL
Sbjct: 322 TVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELL 381

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI----------------------- 264
            QM   G    P+V TY  LI+ YCK GM       +                       
Sbjct: 382 GQMLEKGLM--PNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYC 439

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           +  + +A  +   ML +  +PDVV YN LIDG C++   + A  L   MN +G +P++ T
Sbjct: 440 KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWT 499

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAE 383
           Y S I        +++A ++   ++    GV P    YT +I   C+AG+V EA   L +
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLE--QKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEK 557

Query: 384 LVDGGSVPREYTYKLVCDALNA---AEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKH 440
           ++    +P   T+  +   L A    +E +LL++   K ++ G++      +    I+ H
Sbjct: 558 MLSKNCLPNSLTFNALIHGLCADGKLKEATLLEE---KMVKIGLQ----PTVSTDTILIH 610

Query: 441 KELLKCGEID 450
           + LLK G+ D
Sbjct: 611 R-LLKDGDFD 619



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 123/272 (45%), Gaps = 48/272 (17%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A+    +M + +  PDV  YN +I+  CR GNF+ A  LL  M   G    PD +TY
Sbjct: 443 VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGL--VPDQWTY 500

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T +I S CK            +R+ EA  LF  +  KG  P+VV Y  LIDG CK  +++
Sbjct: 501 TSMIDSLCK-----------SKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVD 549

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM---------------- 348
            A  + + M  K C+PN +T+N+ I       ++ +A  +  KM                
Sbjct: 550 EAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILI 609

Query: 349 -----------------QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                            Q L+ G  P + +YT  I   C  GR+L+A D +A++ + G  
Sbjct: 610 HRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVS 669

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
           P  +TY  +        + +   D L KR+RD
Sbjct: 670 PDLFTYSSLIKGYGDLGQTNFAFDVL-KRMRD 700



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 148/332 (44%), Gaps = 39/332 (11%)

Query: 89  NIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEM---------- 138
           ++ + V  + P+       + L    A  F HW+ +   + H+  +   +          
Sbjct: 80  SLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYV 139

Query: 139 GIVFA------RGNNVKGLWDFLKDMSRRGNG----ELVTTSSVTC---LIKVLGEEGLV 185
           G+VF       +  +  G   ++ D+ R+ N     EL     + C   L+  L   GLV
Sbjct: 140 GVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLV 199

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           +E    +  M + +  P++Y YN ++N  C++GN  +A   + ++   G    PD +TYT
Sbjct: 200 DEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGL--DPDFFTYT 257

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            LI  YC+           R+ +  A  +F  M  KG   + VAY  LI G C   RI+ 
Sbjct: 258 SLIMGYCQ-----------RKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDE 306

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPI 364
           A++LF  M    C P   TY   I+         +A+ ++++M+    G+ P   +YT +
Sbjct: 307 AMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEET--GIKPNIHTYTVL 364

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           I +LC   +  +AR+ L ++++ G +P   TY
Sbjct: 365 IDSLCSQCKFEKARELLGQMLEKGLMPNVITY 396



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 14/197 (7%)

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN ++N+L R G  ++ + +   ME+   +  P++YTY  +++ YCK G           
Sbjct: 186 YNTLLNSLARFGLVDEMKQVY--MEMLEDKVCPNIYTYNKMVNGYCKLG----------- 232

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            + EAN     ++  G  PD   Y  LI G C+   ++ A ++F++M  KGC  N V Y 
Sbjct: 233 NVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYT 292

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             I    V   ID+A+++  KM++ +   PT  +YT +I +LC + R  EA + + E+ +
Sbjct: 293 HLIHGLCVARRIDEAMDLFVKMKD-DECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEE 351

Query: 387 GGSVPREYTYKLVCDAL 403
            G  P  +TY ++ D+L
Sbjct: 352 TGIKPNIHTYTVLIDSL 368



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 39/264 (14%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  +G + EA     +M +   +P V    ++I+ L + G+F+ A    +QM   G
Sbjct: 573 LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG 632

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PD +TYT  I +YC+ G           R+ +A  +   M   G  PD+  Y+ LI
Sbjct: 633 TK--PDAHTYTTFIQTYCREG-----------RLLDAEDMMAKMRENGVSPDLFTYSSLI 679

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY------------------SVVN 336
            G     +   A ++   M   GC P++ T+ S I++                   S + 
Sbjct: 680 KGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMM 739

Query: 337 EIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV-DGGSVPREY 394
           E D  +E++ KM  + H V P + SY  +I  +CE G +  A      +  + G  P E 
Sbjct: 740 EFDTVVELLEKM--VEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSEL 797

Query: 395 TYKLV----CDALNAAEEPSLLDD 414
            +  +    C      E   ++DD
Sbjct: 798 VFNALLSCCCKLKKHNEAAKVVDD 821



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 14/198 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    + G V+EA     +M    C P+   +N +I+ LC  G   +A  L E+M  
Sbjct: 536 TALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVK 595

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  P V T TILI    K G               A   F+ ML  G  PD   Y  
Sbjct: 596 IGLQ--PTVSTDTILIHRLLKDG-----------DFDHAYSRFQQMLSSGTKPDAHTYTT 642

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
            I   C+  R+  A ++   M + G  P+  TY+S I+ Y  + + + A +++++M++  
Sbjct: 643 FIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG 702

Query: 353 HGVPTSSSYTPIIHALCE 370
              P+  ++  +I  L E
Sbjct: 703 -CEPSQHTFLSLIKHLLE 719



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 25/161 (15%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M +    P+  +Y  +I  +C VGN   A  + + M+      P ++  +  L+S  CK
Sbjct: 750 KMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSEL-VFNALLSCCCK 808

Query: 254 YGMQTGCRKAIRRRIW------------------------EANHLFRLMLFKGFVPDVVA 289
                   K +   I                             +F+ +L  G+  D +A
Sbjct: 809 LKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELA 868

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           +  +IDG  K   +E   ELF+ M K GC  +  TY+  I 
Sbjct: 869 WKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIE 909



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 38/189 (20%)

Query: 153 DFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           D +  M   G + +L T SS   LIK  G+ G  N A     RM+   C P  + +  +I
Sbjct: 658 DMMAKMRENGVSPDLFTYSS---LIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLI 714

Query: 212 N---------------ALCRVGN---FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
                            LC + N   F+    LLE+M        P+  +Y  LI   C+
Sbjct: 715 KHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKM--VEHSVTPNAKSYEKLILGICE 772

Query: 254 YGMQTGCRKAIRRRIWEA--NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
            G           R+ E   +H+ R    +G  P  + +N L+  CCK  +   A ++ D
Sbjct: 773 VG---------NLRVAEKVFDHMQR---NEGISPSELVFNALLSCCCKLKKHNEAAKVVD 820

Query: 312 DMNKKGCIP 320
           DM   G +P
Sbjct: 821 DMICVGHLP 829


>gi|225437663|ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 136/286 (47%), Gaps = 21/286 (7%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           +A  F+++  +   F+H   +   M  +  R      +W+ L DM RR +  L++  SV 
Sbjct: 108 QALAFFNYTNKRKGFYHTPFSLDTMLYILGRSRRFDQIWELLVDM-RRKDQSLISPRSVQ 166

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            ++  + +   V + + +F + K+     D   +N ++  LC+  +   AR +   ++  
Sbjct: 167 VVLGRIAKVCSVKQTVESFRKFKKLVPEFDTACFNALLRTLCQEKSMRDARNVYHSLK-H 225

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
            FR  PD+ T+ IL+S +              +   EA   F  M   G  PDVV+YNCL
Sbjct: 226 DFR--PDLRTFNILLSGW--------------KSAEEAEGFFDEMREMGVEPDVVSYNCL 269

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ID  CK   IERA ++ D M  +   P+ ++Y S I    +V + DKA +++++M+   +
Sbjct: 270 IDVYCKGREIERAYKVIDKMRDEQISPDVISYTSIIGGLGLVGQPDKARDVLKEMK--EY 327

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           G  P  ++Y   I   C A R+ +A   + E+V  G  P   TY L
Sbjct: 328 GCYPDVAAYNAAIRNFCIANRLGDADGLMDEMVGKGLSPNATTYNL 373



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 98/277 (35%), Gaps = 88/277 (31%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           +      +G +D +++M     G      S  CLI V  +   +  A     +M+  +  
Sbjct: 241 WKSAEEAEGFFDEMREM-----GVEPDVVSYNCLIDVYCKGREIERAYKVIDKMRDEQIS 295

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV +Y  +I  L  VG  +KAR +L++M+  G  C PDV  Y   I ++C         
Sbjct: 296 PDVISYTSIIGGLGLVGQPDKARDVLKEMKEYG--CYPDVAAYNAAIRNFC--------- 344

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI---------------------DGCC-- 298
             I  R+ +A+ L   M+ KG  P+   YN                         GC   
Sbjct: 345 --IANRLGDADGLMDEMVGKGLSPNATTYNLFFRCFYWSNDLGRSCGLYQRMKKTGCLPN 402

Query: 299 ------------KTYRIERALELFDDMNKKG---------------------------CI 319
                       +  ++E ALEL++DM +KG                           C+
Sbjct: 403 TQSCMFLTRLFRRQEKVEMALELWNDMVEKGFGSYILVSDVLFDMLCDMGKLVEVEKCCL 462

Query: 320 --------PNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
                   P+ V++        + N+ +    +  KM
Sbjct: 463 QMIEKGHKPSNVSFRRIKVLMELANKHEALQNLTEKM 499


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 128/270 (47%), Gaps = 21/270 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + + ++V+ L+  L ++G +  A     ++K+F   P ++ YN +IN++C+ G  ++A
Sbjct: 315 GFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEA 374

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L   M   G   P DV TY+ILI S+CK G           ++  A H    M   G 
Sbjct: 375 ESLFNNMGHKGLF-PNDV-TYSILIDSFCKRG-----------KLDVALHFLGKMTEVGI 421

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
              V  Y+ LI G CK  ++  A  LFD+M   G  PN V Y S I  Y    E+  A  
Sbjct: 422 KATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFR 481

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV--- 399
           +  +M     G+ P + ++T +I  LC A R+ EA     E+V+   +P E TY ++   
Sbjct: 482 LYHEMT--GKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEG 539

Query: 400 -CDALNAAEEPSLLDDGLRKR-IRDGIEYR 427
            C   N      LLD+ + K  + D   YR
Sbjct: 540 HCKEGNTVRAFELLDEMVEKGLVPDTYTYR 569



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 124/275 (45%), Gaps = 30/275 (10%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI    + G ++ AL    +M +   +  VY Y+ +I+  C++G    A+ L ++M  
Sbjct: 394 SILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIA 453

Query: 233 PGFRCPPDVYTYTILISSYCKYG-MQTGCR-------KAIR----------------RRI 268
            G +  P+V  YT LIS YCK G +    R       K I                  R+
Sbjct: 454 NGLK--PNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRM 511

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            EAN LF  M+    +P+ V YN LI+G CK     RA EL D+M +KG +P+  TY   
Sbjct: 512 AEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPL 571

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           I        + +A E M  +Q     +     ++ ++H  C+ GR+ +A D   E++  G
Sbjct: 572 ISGLCSTGRVSEAREFMNDLQGEQQKL-NEMCFSALLHGYCKEGRLDDALDACREMLGRG 630

Query: 389 SVPREYTYK-LVCDALNAAEEPSLLDDGLRKRIRD 422
                  Y  L+   L   +  S++D  L K++ D
Sbjct: 631 VAMDLVCYSVLIYGILRQQDRRSIID--LLKQMHD 663



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 16/217 (7%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           AL  F  +     RPDVY Y  V+ +LC + +F +AR ++ +ME  G  C   V TY + 
Sbjct: 199 ALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSG--CDLSVATYNVF 256

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I   CK            +R+WEA  +  L+ +KG   DV  Y  L+ G CK    E   
Sbjct: 257 IRGLCK-----------NQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGE 305

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
           E+ ++M + G +P+    ++ +        I  A +++ K++    GV P+   Y  +I+
Sbjct: 306 EMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKF--GVAPSLFVYNALIN 363

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++C+ G++ EA      +   G  P + TY ++ D+ 
Sbjct: 364 SMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSF 400



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 18/197 (9%)

Query: 150 GLWDFLKDMSRR--GNGELVTTSSVTCLIKVLGEEGLVNEALATF-YRMKQFRCRPDVYA 206
           GL D  + + R    +  L   ++  C +  L  EG + +A+      ++ F    +   
Sbjct: 719 GLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFL--ANTVT 776

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN++I   C++G   +A  +L  M   G    PD  +Y+ +I  YC+ G     ++AI+ 
Sbjct: 777 YNILIRGFCKLGRIQEAAEVLVNMIDSGI--SPDCISYSTIIYEYCRRG---DLKEAIK- 830

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            +WE+      ML +G  PD VAYN LI GCC T  + +A EL DDM ++G  PNR TYN
Sbjct: 831 -LWES------MLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYN 883

Query: 327 SFIRYYSVVNEIDKAIE 343
           S I    +++ +    +
Sbjct: 884 SLIHGTCLMSSVSSTAD 900



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 129/281 (45%), Gaps = 22/281 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           +F+ D+  +G  + +     + L+    +EG +++AL     M       D+  Y+V+I 
Sbjct: 586 EFMNDL--QGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIY 643

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            + R  +      LL+QM   G R  PD   YT +I +  K G            +  A 
Sbjct: 644 GILRQQDRRSIIDLLKQMHDQGLR--PDNVLYTTMIDANAKAG-----------NLKMAF 690

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L+ +M+ +G +P+VV Y  LI+G CK   +++A  L  +M     +PN+ TY  F+ Y 
Sbjct: 691 GLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYL 750

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
           +    I+KAI++   +  L   +  + +Y  +I   C+ GR+ EA + L  ++D G  P 
Sbjct: 751 TSEGNIEKAIQLHDVL--LEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPD 808

Query: 393 EYTYKLV----CDALNAAEEPSLLDDGLRKRIR-DGIEYRF 428
             +Y  +    C   +  E   L +  L + +  D + Y F
Sbjct: 809 CISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNF 849



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 106/241 (43%), Gaps = 25/241 (10%)

Query: 143 ARGNNVK---GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           A+  N+K   GLWD +        G L    + T LI  L + GL+++A      M    
Sbjct: 681 AKAGNLKMAFGLWDIMVS-----EGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASN 735

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             P+   Y   ++ L   GN  KA   L  + L GF    +  TY ILI  +CK G    
Sbjct: 736 SLPNQNTYACFLDYLTSEGNIEKA-IQLHDVLLEGFL--ANTVTYNILIRGFCKLG---- 788

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  RI EA  +   M+  G  PD ++Y+ +I   C+   ++ A++L++ M  +G  
Sbjct: 789 -------RIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVN 841

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+ V YN  I    V  E+ KA E+   M  +  GV P  ++Y  +IH  C    V    
Sbjct: 842 PDTVAYNFLIYGCCVTGELTKAFELRDDM--MRRGVKPNRATYNSLIHGTCLMSSVSSTA 899

Query: 379 D 379
           D
Sbjct: 900 D 900



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 20/172 (11%)

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           R+   A HLF  ++  G  PDV  Y  ++   C+     RA E+   M   GC  +  TY
Sbjct: 194 RQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATY 253

Query: 326 NSFIRYYSVVNEIDKAIEM--MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           N FIR       + +A+E+  +   + L   V T   Y  ++  LC+        + + E
Sbjct: 254 NVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGT---YCTLVLGLCKVEEFEAGEEMMNE 310

Query: 384 LVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVK 435
           +++ G VP E                S L DGLRK  +  I   F  V KVK
Sbjct: 311 MIEFGFVPSEAAV-------------SNLVDGLRK--KGNIGSAFDLVNKVK 347



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           RR  +   + RLM+  G +P +   + +++G  +  +   AL LFD++   G  P+   Y
Sbjct: 159 RRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVY 218

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEA 377
            + +R    + +  +A E++ +M+  + G   S ++Y   I  LC+  RV EA
Sbjct: 219 TAVVRSLCELKDFIRAREVIGRME--SSGCDLSVATYNVFIRGLCKNQRVWEA 269


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 125/242 (51%), Gaps = 17/242 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L +EG V EA +    M +   +PDV  Y+ +++    V    KA+ +   M L G
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDV+TYTILI+ +CK            + + EA +LF+ M  K  VP +V Y+ LI
Sbjct: 335 --VTPDVHTYTILINGFCK-----------NKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+ RI    +L D+M  +G   + +TY+S I        +D+AI +  KM++    
Sbjct: 382 DGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKD-QEI 440

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
            P   ++T ++  LC+ GR+ +A++   +L+  G     YTY ++   +N   +  LL++
Sbjct: 441 RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVM---INGHCKQGLLEE 497

Query: 415 GL 416
            L
Sbjct: 498 AL 499



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 104/222 (46%), Gaps = 15/222 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDV  YN +I+A+C+    ++A  L  +M + G     DV TY  LI  +C  G     
Sbjct: 196 KPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGIS--ADVVTYNTLIYGFCIVG----- 248

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA  L   M+ K   P+V  YN L+D  CK  +++ A  +   M K    P
Sbjct: 249 ------KLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKP 302

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + +TY++ +  Y +V E+ KA  +   M +L    P   +YT +I+  C+   V EA + 
Sbjct: 303 DVITYSTLMDGYFLVYEVKKAQHVFNAM-SLMGVTPDVHTYTILINGFCKNKMVDEALNL 361

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
             E+     VP   TY  + D L  +   S + D L   +RD
Sbjct: 362 FKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWD-LIDEMRD 402



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 18/203 (8%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD    N +I  LC  G   KA    +++   GF+   +  +Y  LI+  CK G      
Sbjct: 127 PDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQL--NQVSYATLINGVCKIGDTRAAI 184

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
           K +R+                  PDVV YN +ID  CK   +  A  LF +M  KG   +
Sbjct: 185 KFLRKIDGRLTK-----------PDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISAD 233

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
            VTYN+ I  + +V ++ +AI ++ +M  + +N   P   +Y  ++ ALC+ G+V EA+ 
Sbjct: 234 VVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTIN---PNVYTYNILVDALCKEGKVKEAKS 290

Query: 380 FLAELVDGGSVPREYTYKLVCDA 402
            LA ++     P   TY  + D 
Sbjct: 291 VLAVMLKACVKPDVITYSTLMDG 313



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 15/207 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V    +  K+M ++     + T S   LI  L + G ++        M+     
Sbjct: 349 FCKNKMVDEALNLFKEMHQKNMVPGIVTYS--SLIDGLCKSGRISYVWDLIDEMRDRGQP 406

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            DV  Y+ +I+ LC+ G+ ++A  L  +M+    R  P+++T+TIL+   CK G      
Sbjct: 407 ADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIR--PNIFTFTILLDGLCKGG------ 458

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A  +F+ +L KG+  +V  YN +I+G CK   +E AL +   M   GCIPN
Sbjct: 459 -----RLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPN 513

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKM 348
             T+ + I      +E DKA +++R+M
Sbjct: 514 AFTFETIIIALFKKDENDKAEKLLRQM 540



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 14/216 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    +  +V+EAL  F  M Q    P +  Y+ +I+ LC+ G  +    L+++M  
Sbjct: 343 TILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRD 402

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G   P DV TY+ LI   CK G            +  A  LF  M  +   P++  +  
Sbjct: 403 RG--QPADVITYSSLIDGLCKNG-----------HLDRAIALFNKMKDQEIRPNIFTFTI 449

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG CK  R++ A E+F D+  KG   N  TYN  I  +     +++A+ M+ KM++ N
Sbjct: 450 LLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMED-N 508

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             +P + ++  II AL +     +A   L +++  G
Sbjct: 509 GCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 18/244 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A++ F RM   R  P +  +N ++++  ++ +++ A  L  ++EL G +  PD+ T 
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQ--PDLITL 97

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI+ +C  G  T     + +           +L +G+ PD V  N LI G C   +++
Sbjct: 98  NILINCFCHMGQITFGFSVLAK-----------ILKRGYPPDTVTLNTLIKGLCLKGQVK 146

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +AL   D +  +G   N+V+Y + I     + +   AI+ +RK+       P    Y  I
Sbjct: 147 KALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDG-RLTKPDVVMYNTI 205

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRI 420
           I A+C+   V EA    +E+   G      TY  +    C      E   LL++ + K I
Sbjct: 206 IDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTI 265

Query: 421 RDGI 424
              +
Sbjct: 266 NPNV 269


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 134/270 (49%), Gaps = 21/270 (7%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           +K   D    M+ +     V T S+  L+    ++G + EA      M +   +PDV  Y
Sbjct: 384 LKDAIDLFNKMTSKNIIPDVYTFSI--LVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTY 441

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           + +++  C V   NKA  +   M   G     +V +Y I+I+ +CK  M           
Sbjct: 442 SSLMDGYCLVNEVNKAESIFNTMSHRG--VTANVQSYNIMINGFCKIKM----------- 488

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + EA  LF+ M  K   PDV+ Y+ LIDG CK+ RI  ALEL D+M+ +G  P+ +TYNS
Sbjct: 489 VDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNS 548

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            +      + +DKAI ++ K++    G+ P  ++YT ++  LC++G++ +AR    +L+ 
Sbjct: 549 ILDALCKKHHVDKAITLLTKLK--GQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLV 606

Query: 387 GGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            G     Y Y ++   +    +  L D+ L
Sbjct: 607 KGYNLDVYAYTVM---IQGFCDKGLFDEAL 633



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 107/234 (45%), Gaps = 16/234 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L + G    AL    R      +PDV  YN +I+ +C+  + N A  L    
Sbjct: 300 SYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYS-- 357

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E    R  PDV+TY  LIS +C  G           ++ +A  LF  M  K  +PDV  +
Sbjct: 358 EKVSKRIFPDVFTYNALISGFCIVG-----------KLKDAIDLFNKMTSKNIIPDVYTF 406

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + L+DG CK   I+ A  +   M K+   P+ VTY+S +  Y +VNE++KA  +   M  
Sbjct: 407 SILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMS- 465

Query: 351 LNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            + GV  +  SY  +I+  C+   V EA     E+      P   TY  + D L
Sbjct: 466 -HRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGL 518



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 16/184 (8%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +++T SS   LI  L + G ++ AL     M     +PD+  YN +++ALC+  + +KA 
Sbjct: 507 DVITYSS---LIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAI 563

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            LL +++  G R  PD+ TYTIL+   C+ G           ++ +A  +F  +L KG+ 
Sbjct: 564 TLLTKLKGQGIR--PDMNTYTILVKGLCQSG-----------KLEDARKVFEDLLVKGYN 610

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
            DV AY  +I G C     + AL L   M + GCIP+  TY   I      +E D A ++
Sbjct: 611 LDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKL 670

Query: 345 MRKM 348
           +R+M
Sbjct: 671 LREM 674



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 123/298 (41%), Gaps = 58/298 (19%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG    T ++T  IK    +G +++AL    ++       D  +Y  +IN LC+VG    
Sbjct: 257 NGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKA 316

Query: 223 ARFLLEQME--------------LPGF-------------------RCPPDVYTYTILIS 249
           A  LL + +              + G                    R  PDV+TY  LIS
Sbjct: 317 ALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALIS 376

Query: 250 SYCKYGMQTGCRKAIRR------------------------RIWEANHLFRLMLFKGFVP 285
            +C  G          +                         I EA ++  +M+ +   P
Sbjct: 377 GFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKP 436

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           DVV Y+ L+DG C    + +A  +F+ M+ +G   N  +YN  I  +  +  +D+A+++ 
Sbjct: 437 DVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLF 496

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++M +     P   +Y+ +I  LC++GR+  A + + E+   G  P   TY  + DAL
Sbjct: 497 KEMHH-KQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDAL 553



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 16/243 (6%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N V         MS RG    V + ++  +I    +  +V+EA+  F  M   +  PDV 
Sbjct: 452 NEVNKAESIFNTMSHRGVTANVQSYNI--MINGFCKIKMVDEAMKLFKEMHHKQIFPDVI 509

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            Y+ +I+ LC+ G  + A  L+++M   G +  PD+ TY  ++ + CK           +
Sbjct: 510 TYSSLIDGLCKSGRISYALELVDEMHYRGQQ--PDIITYNSILDALCK-----------K 556

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             + +A  L   +  +G  PD+  Y  L+ G C++ ++E A ++F+D+  KG   +   Y
Sbjct: 557 HHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAY 616

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              I+ +      D+A+ ++ KM+  N  +P + +Y  II +L E      A   L E++
Sbjct: 617 TVMIQGFCDKGLFDEALALLSKMEE-NGCIPDAKTYEIIILSLFEKDENDMAEKLLREMI 675

Query: 386 DGG 388
             G
Sbjct: 676 MRG 678



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 17/193 (8%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD  T T  I  +C           ++ +I +A H    ++  GF  D V+Y  LI+G C
Sbjct: 261 PDTITLTTFIKGFC-----------LKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLC 309

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K    + ALEL    + K   P+ V YN+ I        ++ A ++  +  +     P  
Sbjct: 310 KVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVS-KRIFPDV 368

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDD 414
            +Y  +I   C  G++ +A D   ++     +P  YT+ ++ D      N  E  ++L  
Sbjct: 369 FTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAM 428

Query: 415 GLRKRIR-DGIEY 426
            +++ I+ D + Y
Sbjct: 429 MMKQSIKPDVVTY 441



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           +L  G+ PD +     I G C   +I +AL   D +   G   ++V+Y + I     V E
Sbjct: 254 ILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGE 313

Query: 338 IDKAIEMMRKMQNLNHG---VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
              A+E++R+    N G    P    Y  II  +C+   V +A D  +E V     P  +
Sbjct: 314 TKAALELLRR----NDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVF 369

Query: 395 TY 396
           TY
Sbjct: 370 TY 371


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 125/261 (47%), Gaps = 29/261 (11%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + L+  L +EG+V EAL+ F +M Q    PD+  Y+ +I+ +C+   + ++  LL +M
Sbjct: 316 TFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEM 375

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI------------------------RR 266
                R  PDV T++I +  +CK GM +  +  I                          
Sbjct: 376 LSRNIR--PDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHS 433

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++ EA  +F +M+ KG  PDV++YN LI G CK+ RI+ A +LFD+M+ KG  PN +T+ 
Sbjct: 434 QMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHT 493

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELV 385
           + I           A E+ +KM   +HG P    +Y+ ++   C+ G + EA      L 
Sbjct: 494 TLISGLCQAGRPYAAKELFKKMG--SHGCPPDLITYSTLLSGFCKHGHLDEALALFEALK 551

Query: 386 DGGSVPREYTYKLVCDALNAA 406
                P     K++   +  A
Sbjct: 552 KSQLKPNHVICKILLGGMCKA 572



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 27/260 (10%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G   T  +   LI  +   G   +A   F  M ++  +PDV  ++++++ALC+ G  
Sbjct: 271 RSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVV 330

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM----QTGCRKAIRR---------R 267
            +A  +  +M        PD+ TY+ LI   CK  +     T   + + R          
Sbjct: 331 LEALSVFGKMIQIAME--PDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFS 388

Query: 268 IW-----------EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
           IW           EA  +  LM+ +G  P+VV YN L+DG C   +++ A ++FD M  K
Sbjct: 389 IWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNK 448

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           GC P+ ++YN  I+ Y     ID+A ++  +M +     P S ++T +I  LC+AGR   
Sbjct: 449 GCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSH-KGLTPNSITHTTLISGLCQAGRPYA 507

Query: 377 ARDFLAELVDGGSVPREYTY 396
           A++   ++   G  P   TY
Sbjct: 508 AKELFKKMGSHGCPPDLITY 527



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 113/238 (47%), Gaps = 20/238 (8%)

Query: 151 LWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           LW      L +M  R     V T S+   + V  ++G+V+EA +    M +   RP+V  
Sbjct: 364 LWKESSTLLNEMLSRNIRPDVVTFSI--WVDVFCKKGMVSEAQSIINLMIERGLRPNVVT 421

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN +++  C     ++AR + + M   G  C PDV +Y ILI  YCK             
Sbjct: 422 YNSLMDGYCLHSQMDEARKVFDIMVNKG--CAPDVLSYNILIKGYCK-----------SE 468

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           RI EA  LF  M  KG  P+ + +  LI G C+  R   A ELF  M   GC P+ +TY+
Sbjct: 469 RIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYS 528

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           + +  +     +D+A+ +   ++  +   P       ++  +C+AG++ +A++  + L
Sbjct: 529 TLLSGFCKHGHLDEALALFEALKK-SQLKPNHVICKILLGGMCKAGKLEDAKELFSSL 585



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 119/255 (46%), Gaps = 18/255 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           ++T LI  L    LV    +   ++ +   +P +  +N +IN LC  G   +A   L+ +
Sbjct: 141 TLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYI 200

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G++  P VYT+T++++  CK G      K     +W      + M+     P+VV+Y
Sbjct: 201 MSRGYQ--PTVYTHTMIVNGLCKIG------KTSAAIVW-----MKKMVELDCEPEVVSY 247

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + +ID  CK   +  A++LF  M   G  P  VTYNS I       +  +A  + ++M  
Sbjct: 248 SIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLE 307

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAA 406
            N   P   +++ ++ ALC+ G VLEA     +++     P   TY      VC +    
Sbjct: 308 WNMK-PDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWK 366

Query: 407 EEPSLLDDGLRKRIR 421
           E  +LL++ L + IR
Sbjct: 367 ESSTLLNEMLSRNIR 381



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 124/299 (41%), Gaps = 58/299 (19%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T ++  L + G  + A+    +M +  C P+V +Y+++I++LC+    N+A  L 
Sbjct: 208 TVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLF 267

Query: 228 EQM---------------------------------ELPGFRCPPDVYTYTILISSYCKY 254
             M                                 E+  +   PDV T++IL+ + CK 
Sbjct: 268 YHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKE 327

Query: 255 G------------MQTGCRKAI-----------RRRIW-EANHLFRLMLFKGFVPDVVAY 290
           G            +Q      I           +  +W E++ L   ML +   PDVV +
Sbjct: 328 GVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTF 387

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           +  +D  CK   +  A  + + M ++G  PN VTYNS +  Y + +++D+A ++   M N
Sbjct: 388 SIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVN 447

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
                P   SY  +I   C++ R+ EA+    E+   G  P   T+  +   L  A  P
Sbjct: 448 -KGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRP 505



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 13/151 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LIK   +   ++EA   F  M      P+   +  +I+ LC+ G    A+ L ++M
Sbjct: 456 SYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKM 515

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G  CPPD+ TY+ L+S +CK+G            + EA  LF  +      P+ V  
Sbjct: 516 GSHG--CPPDLITYSTLLSGFCKHG-----------HLDEALALFEALKKSQLKPNHVIC 562

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             L+ G CK  ++E A ELF  ++ +   P+
Sbjct: 563 KILLGGMCKAGKLEDAKELFSSLSIEELQPD 593


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 115/251 (45%), Gaps = 16/251 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L++M  +G    V T   T +I    +EG +++AL     MK   C+P+V+ YN ++ 
Sbjct: 168 EMLQEMFEKGLAPCVVT--CTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQ 225

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             C  G  +KA  LL +M + G    PD  TY +LI   C           I   I  A 
Sbjct: 226 GFCNEGKVHKAMALLNKMRVCGVN--PDAVTYNLLIRGQC-----------IDGHIESAF 272

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L RLM   G + D   YN LI+  CK  R ++A  LFD +  +G  PN VT+NS I   
Sbjct: 273 RLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGL 332

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               ++D A + + KM +     P + +Y+  I  LC+     E   F+ E++     P 
Sbjct: 333 CKSGKVDIAWKFLEKMVSAG-CTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPS 391

Query: 393 EYTYKLVCDAL 403
              Y +V   L
Sbjct: 392 TVNYTIVIHKL 402



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 132/317 (41%), Gaps = 51/317 (16%)

Query: 140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           + + R N V    D    M  RG  + V   S   LI+   E G ++EA+  F  M Q  
Sbjct: 54  VGYCRTNQVDVARDLFDKMPLRGFAQDVV--SYAALIEGFCETGRIDEAVELFGEMDQ-- 109

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG-------------FRC--------- 237
             PD++ Y  ++  LC+ G   +   +L +M+  G             FRC         
Sbjct: 110 --PDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAE 167

Query: 238 -----------PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
                       P V T T +I++YCK G           R+ +A  +  LM  +G  P+
Sbjct: 168 EMLQEMFEKGLAPCVVTCTAVINAYCKEG-----------RMSDALRVLELMKLRGCKPN 216

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           V  YN L+ G C   ++ +A+ L + M   G  P+ VTYN  IR   +   I+ A  ++R
Sbjct: 217 VWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLR 276

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            M+  +  +    +Y  +I+ALC+ GR  +A      L   G  P   T+  + + L  +
Sbjct: 277 LMEG-DGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKS 335

Query: 407 EEPSLLDDGLRKRIRDG 423
            +  +    L K +  G
Sbjct: 336 GKVDIAWKFLEKMVSAG 352



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 21/211 (9%)

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN VI +LCR  +   A   L  M   G+R  PD YT+  LI  YC+             
Sbjct: 14  YNAVIRSLCRRADLASALRYLSLMVRSGWR--PDAYTFNSLIVGYCR-----------TN 60

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++  A  LF  M  +GF  DVV+Y  LI+G C+T RI+ A+ELF +M++    P+   Y 
Sbjct: 61  QVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ----PDMHMYA 116

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           + ++        ++ + M+R+M+ L    P++ +Y  ++   C   +  EA + L E+ +
Sbjct: 117 ALVKGLCKAGRGEEGLLMLRRMKELGWR-PSTRAYAAVVDFRCWERKAKEAEEMLQEMFE 175

Query: 387 GGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
            G  P   T   V   +NA  +   + D LR
Sbjct: 176 KGLAPCVVTCTAV---INAYCKEGRMSDALR 203



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 115/283 (40%), Gaps = 56/283 (19%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I+ L     +  AL     M +   RPD Y +N +I   CR    + AR L ++M L G
Sbjct: 17  VIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRG 76

Query: 235 FR-------------CP----------------PDVYTYTILISSYCKYG---------- 255
           F              C                 PD++ Y  L+   CK G          
Sbjct: 77  FAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVKGLCKAGRGEEGLLMLR 136

Query: 256 --MQTGCRKAIRR-------RIW-----EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
              + G R + R        R W     EA  + + M  KG  P VV    +I+  CK  
Sbjct: 137 RMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEG 196

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
           R+  AL + + M  +GC PN  TYN+ ++ +    ++ KA+ ++ KM+    GV P + +
Sbjct: 197 RMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVC--GVNPDAVT 254

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           Y  +I   C  G +  A   L  +   G +  +YTY  + +AL
Sbjct: 255 YNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINAL 297



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 27/231 (11%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+G +    +   LI  L ++G  ++A + F  ++    +P+   +N +IN LC+ G  +
Sbjct: 280 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVD 339

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKY-GMQTGCR------------------K 262
            A   LE+M   G  C PD YTY+  I   CK  G Q G                     
Sbjct: 340 IAWKFLEKMVSAG--CTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTI 397

Query: 263 AIRRRIWEANH-----LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
            I + + E N+      +  M+  G  PDVV Y   +   C   R+  A  +  +M+K G
Sbjct: 398 VIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNG 457

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
              + + YN+ +  ++ + + D A+ ++++M ++   VP   +Y  ++  L
Sbjct: 458 VTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVA-SVPNQFTYFILLRHL 507



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 16/159 (10%)

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY  +I S C+           R  +  A     LM+  G+ PD   +N LI G C+T +
Sbjct: 13  TYNAVIRSLCR-----------RADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQ 61

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           ++ A +LFD M  +G   + V+Y + I  +     ID+A+E+  +M       P    Y 
Sbjct: 62  VDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ-----PDMHMYA 116

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
            ++  LC+AGR  E    L  + + G  P    Y  V D
Sbjct: 117 ALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVD 155



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 122/319 (38%), Gaps = 75/319 (23%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSS-VTCLIKVLGEEGLVNEALATFYRMKQFR 199
             +   V   W FL+ M   G   +  T SS +  L K+ G +    E L+    M Q  
Sbjct: 332 LCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQ----EGLSFIGEMLQKD 387

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
            +P    Y +VI+ L +  N+        +M   G  C PDV TYT  + +YC       
Sbjct: 388 VKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSG--CNPDVVTYTTSMRAYC------- 438

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
               I  R+ EA ++   M   G   D +AYN L+DG     + + A+ +   M     +
Sbjct: 439 ----IEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASV 494

Query: 320 PNRVTYNSFIRYYSVVNEID-----------KAIEM---------MRKMQNL-NHGVPTS 358
           PN+ TY   +R+   +  ++           KAIE+         M+K + L N G  +S
Sbjct: 495 PNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSS 554

Query: 359 ------------------------------SSYTPIIHALCEAGRVLEARDFLAELVDGG 388
                                           YT ++   C++ R L+A   +  ++  G
Sbjct: 555 ILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHG 614

Query: 389 SVPREYTYK-----LVCDA 402
            +P   +Y+     L+C+ 
Sbjct: 615 FIPHLMSYQHLLSGLICEG 633



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 14/184 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + +    F  MK+    P+   Y+ ++      G   +A  L+  M+        D+YT 
Sbjct: 530 LTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYT- 588

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L++ +CK            +R  +A  L   M+  GF+P +++Y  L+ G     + +
Sbjct: 589 -ALVTCFCK-----------SKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTD 636

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +A E+F +   K   P+ + +   I         D + EM+  ++ +N   P+  +Y  +
Sbjct: 637 KAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMN-CRPSHQTYAML 695

Query: 365 IHAL 368
              L
Sbjct: 696 TEEL 699



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 18/180 (10%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
            +V GL+D +K      N  L  + + + +++   E+G   EA +    MK+     +  
Sbjct: 531 TDVFGLFDVMKK-----NEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNED 585

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            Y  ++   C+   +  A  L+  M   GF   P + +Y  L+S     G QT       
Sbjct: 586 IYTALVTCFCKSKRYLDAWVLVCSMIQHGF--IPHLMSYQHLLSGLICEG-QTD------ 636

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
               +A  +F    +K + PD + +  +IDG  K    + + E+   + +  C P+  TY
Sbjct: 637 ----KAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTY 692


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 16/239 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L++M  +G    + T ++  ++K L  EG + EAL     M +    PDV  YN +I+
Sbjct: 371 NLLEEMREKGVKSSLVTHNI--IVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLID 428

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           A C+ GN  KA  L+++M   G +   D +T   L+ + CK            +R  EA 
Sbjct: 429 ASCKAGNVAKAFVLMDEMVRSGLKM--DTFTLNTLLYNLCK-----------EKRYEEAE 475

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L R    +GFVPD V+Y  ++    K Y+ E AL L+D+M K+   P+  TYN+ I+  
Sbjct: 476 ELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGL 535

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           S + ++ +AI+ + ++  +   VP  ++Y  IIHA C+ G + +A  F  ++V+    P
Sbjct: 536 STMGKLTEAIDKLNELMEMGL-VPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKP 593



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 123/253 (48%), Gaps = 21/253 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+     +G + +AL+T  +M+ F   PD   YN ++NA CR G   +AR LL +M+  G
Sbjct: 215 LVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEG 274

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P   TY  L+S+Y + G            I +A  +   M   GF PD+  YN L 
Sbjct: 275 IV--PTRATYNTLVSAYARLGW-----------IKQATDVVEAMTAFGFEPDLWTYNVLA 321

Query: 295 DGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
            G C+  +++ A +L D+M + G + P+ VTYN+ +           A+ ++ +M+    
Sbjct: 322 AGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMR--EK 379

Query: 354 GVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEE 408
           GV +S  ++  I+  LC  G++ EA   L  + + G  P   TY  +    C A N A+ 
Sbjct: 380 GVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKA 439

Query: 409 PSLLDDGLRKRIR 421
             L+D+ +R  ++
Sbjct: 440 FVLMDEMVRSGLK 452



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 14/220 (6%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           AL  +  M + +  P +  YN +I  L  +G   +A   L ++   G    PD  TY I+
Sbjct: 509 ALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLV--PDDTTYNII 566

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I +YCK G            + +A      M+   F PDVV  N L++G C   R+E+A+
Sbjct: 567 IHAYCKEG-----------DLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAM 615

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           +LF+   +KG   + +TYN+ I+     N++D A+     M+ +    P   +Y  ++ A
Sbjct: 616 KLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADME-VRGLQPDVFTYNVLLSA 674

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           L EAGR +EA+  L +L + G +   + Y  +  ++ A E
Sbjct: 675 LSEAGRSVEAQKMLHKLNESGKLYGRFFYPSIKSSVEAVE 714



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 104/243 (42%), Gaps = 27/243 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMK----------QFR----CRPDVYAYNVVINALCRVGNF 220
           L+       L + AL+T+ R++           FR     RP + A N V++AL R  + 
Sbjct: 129 LLASFPTSALADAALSTYARLRLPHLAAQLLHSFRRRGCVRPSLQAANAVLSALARSPST 188

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           +    L     L   R  P+ YT+ +L+ ++C  G        + +           M  
Sbjct: 189 SPQASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSK-----------MQG 237

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  PD V YN L++  C+   +  A  L   M K+G +P R TYN+ +  Y+ +  I +
Sbjct: 238 FGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQ 297

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV-PREYTYKLV 399
           A +++  M       P   +Y  +   LC+AG+V EA     E+   G V P   TY  +
Sbjct: 298 ATDVVEAMTAFGFE-PDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTL 356

Query: 400 CDA 402
            DA
Sbjct: 357 VDA 359



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 132/331 (39%), Gaps = 27/331 (8%)

Query: 84  KKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFA 143
           K++ Y  A  +L   P     P +V+ G   A  F  +         +EM  +++    +
Sbjct: 467 KEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSIS 526

Query: 144 RGNN-VKGLW---------DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
             N  +KGL          D L ++   G     TT ++  +I    +EG + +A     
Sbjct: 527 TYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNI--IIHAYCKEGDLEKAFQFHN 584

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M +   +PDV   N ++N LC  G   KA  L E     G +   DV TY  LI + CK
Sbjct: 585 KMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKV--DVITYNTLIQALCK 642

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                    A+R         F  M  +G  PDV  YN L+    +  R   A ++   +
Sbjct: 643 ---DNDVDTALR--------FFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKL 691

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL-NHGVPTSSSYTPIIHALCEAG 372
           N+ G +  R  Y S       V E  K  E+   ++++ N       SY   I  LC  G
Sbjct: 692 NESGKLYGRFFYPSIKSSVEAV-ETGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGG 750

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++ EA+  L E++  G      TY  + + L
Sbjct: 751 QLKEAKAVLDEMMQKGMSVDNSTYITLMEGL 781


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 32/262 (12%)

Query: 160 RRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           RR +G+L+  + V    +I  + ++ L N+A   +  M   R  PDV  YN +IN  C V
Sbjct: 230 RRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIV 289

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G    A  L  +M        PDVYT+ IL+ ++CK G           R+ EA +   +
Sbjct: 290 GKLKDAIGLFNKMTSENIN--PDVYTFNILVDAFCKEG-----------RVKEAKNGLAM 336

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+ +G  PDVV YN L+D  C    + +A  +F+ M+ +G   N  +Y+  I  +  +  
Sbjct: 337 MMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKM 396

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV---LEARDFLA------------ 382
           +D+A+++ ++M +     P   +Y+ +I  LC++GR+   LE  D +             
Sbjct: 397 VDQAMKLFKEMHH-KQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLT 455

Query: 383 -ELVDGGSVPREYTYKLVCDAL 403
            +L D G  P  +TY ++ D L
Sbjct: 456 RQLKDQGIRPNMFTYTILIDGL 477



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 28/221 (12%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + +A+  F +M      PDVY +N++++A C+ G   +A+  L  M   G +  PDV 
Sbjct: 290 GKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIK--PDVV 347

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY  L+  YC           +   + +A  +F  M  +G   +V +Y+ +I+  CK   
Sbjct: 348 TYNSLMDRYC-----------LVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKM 396

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN------------ 350
           +++A++LF +M+ K   PN +TY+S I        I  A+E+  +M +            
Sbjct: 397 VDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLTR 456

Query: 351 --LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              + G+ P   +YT +I  LC+ GR+ +AR+   +L+  G
Sbjct: 457 QLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKG 497



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 114/250 (45%), Gaps = 30/250 (12%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+    +EG V EA      M +   +PDV  YN +++  C V   NKA+ +   M   G
Sbjct: 317 LVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRG 376

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                +V +Y+I+I+ +CK  M           + +A  LF+ M  K   P+V+ Y+ LI
Sbjct: 377 VTA--NVRSYSIMINRFCKIKM-----------VDQAMKLFKEMHHKQIFPNVITYSSLI 423

Query: 295 DGCCKTYRIERALELFDDMNKK----------------GCIPNRVTYNSFIRYYSVVNEI 338
           DG CK+ RI  ALEL D+M+ +                G  PN  TY   I        +
Sbjct: 424 DGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRL 483

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           + A  +   +    + + T ++YT +IH  C  G   EA   L+++ D   +P   TY++
Sbjct: 484 EDARNIFEDLLVKGYNI-TVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEI 542

Query: 399 VCDALNAAEE 408
           +  +L   +E
Sbjct: 543 IIRSLFDNDE 552



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 92/210 (43%), Gaps = 27/210 (12%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N V         MS RG    V + S+  +I    +  +V++A+  F  M   +  P+V 
Sbjct: 360 NEVNKAKSIFNTMSHRGVTANVRSYSI--MINRFCKIKMVDQAMKLFKEMHHKQIFPNVI 417

Query: 206 AYNVVINALCRVGNFNKARFLLEQM--------------ELPGFRCPPDVYTYTILISSY 251
            Y+ +I+ LC+ G  + A  L ++M              +L      P+++TYTILI   
Sbjct: 418 TYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGL 477

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK G           R+ +A ++F  +L KG+   V  Y  +I G C     + A+ L  
Sbjct: 478 CKGG-----------RLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLS 526

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
            M    CIPN VTY   IR     +E DKA
Sbjct: 527 KMKDNCCIPNAVTYEIIIRSLFDNDENDKA 556


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 127/277 (45%), Gaps = 27/277 (9%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  +T ++   L+  L  +G   EA      M      PDV+ YN++IN  C+ GN  KA
Sbjct: 616 GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKA 675

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK----AIRR------------- 266
             + E M   G R    V TYT LI +  K G      K    A+RR             
Sbjct: 676 LEIFENMSRRGVRA--TVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI 733

Query: 267 -------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   I  A  +   M  K   PD V YN L+ G C   R++ A +L D+M ++G  
Sbjct: 734 NSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQ 793

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ VTYN+ I  YS+  ++  A+ +  +M N     PT  +Y  +I  LC+ G+  +A +
Sbjct: 794 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFN-PTLLTYNALIQGLCKNGQGDDAEN 852

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            + E+V+ G  P + TY  + + L   +E ++ D+ L
Sbjct: 853 MVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERL 889



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 117/266 (43%), Gaps = 34/266 (12%)

Query: 113 NKATEFYHWVERFFD-------FFHNEMT---CKEMGIVFARGNNVKGLWDFLKDMSRRG 162
            + TE Y  VE           F +N +    CKE         NVK   +  ++MSRRG
Sbjct: 635 GRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKE--------GNVKKALEIFENMSRRG 686

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
               V T   T LI  L ++G V E    F    +   RPD+  YN +IN+    GN ++
Sbjct: 687 VRATVVT--YTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDR 744

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  ++ +ME    R  PD  TY  L+   C  G           R+ EA  L   M  +G
Sbjct: 745 AFEIMGEMEKK--RIAPDDVTYNTLMRGLCLLG-----------RVDEARKLIDEMTERG 791

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PD+V YN LI G      ++ AL + ++M  KG  P  +TYN+ I+      + D A 
Sbjct: 792 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 851

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHAL 368
            M+++M   N   P  S+Y  +I  L
Sbjct: 852 NMVKEMVE-NGITPDDSTYISLIEGL 876



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 26/239 (10%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           ++T+S+  L+  L        A A F  M + R       +N+++  LC  G   +A  L
Sbjct: 450 ISTASLHPLLSALPSA----PAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALEL 505

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-P 285
           L QM  P      +  TY  +I+ +C  G           R+  A  + R M  +G + P
Sbjct: 506 LRQMPRP------NAVTYNTVIAGFCSRG-----------RVQAALDIMREMRERGGIAP 548

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEM 344
           +   Y  +I G CK  R++ A+++FD+M  KG + P  V YN+ I  Y    ++D A+  
Sbjct: 549 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 608

Query: 345 MRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             +M  +  GV  T ++Y  ++HAL   GR  EA + + E+   G  P  +TY ++ + 
Sbjct: 609 RDRM--VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILING 665



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 109/271 (40%), Gaps = 55/271 (20%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T++   +++ L   G    AL    +M     RP+   YN VI   C  G    A  ++ 
Sbjct: 483 TTTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMR 538

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PDV 287
           +M   G    P+ YTY  +IS +CK G           R+ EA  +F  ML KG V P+ 
Sbjct: 539 EMRERG-GIAPNQYTYGTVISGWCKVG-----------RVDEAVKVFDEMLTKGEVKPEA 586

Query: 288 VAYNCLIDGCCKTYRIERAL-----------------------------------ELFDD 312
           V YN LI G C   +++ AL                                   EL ++
Sbjct: 587 VMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEE 646

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEA 371
           M  KG  P+  TYN  I  +     + KA+E+   M     GV  T  +YT +I+AL + 
Sbjct: 647 MGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMS--RRGVRATVVTYTALIYALSKK 704

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           G+V E      E V  G  P    Y  + ++
Sbjct: 705 GQVQETDKLFDEAVRRGIRPDLVLYNALINS 735



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIE 343
           P+ V YN +I G C   R++ AL++  +M ++G I PN+ TY + I  +  V  +D+A++
Sbjct: 512 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 571

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  +M       P +  Y  +I   C+ G++  A  +   +V+ G      TY L+  AL
Sbjct: 572 VFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 631


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 15/232 (6%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           V   + T L+K L  +   ++A+     RM Q  C P+V++YN+++  LC      +A  
Sbjct: 124 VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALE 183

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           LL+ M   G  CPPDV +YT +I+ + K G            + +A   +  ML +G +P
Sbjct: 184 LLQMMPDDGGDCPPDVVSYTTVINGFFKEG-----------DLDKAYGTYHEMLDRGILP 232

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           +VV YN +I   CK   +++A+E+   M K G +PN  TYNS +  Y    +  +AI  +
Sbjct: 233 NVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292

Query: 346 RKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +KM   + GV P   +Y  ++  LC+ GR  EAR     +   G  P   TY
Sbjct: 293 KKMH--SDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 137/279 (49%), Gaps = 23/279 (8%)

Query: 141 VFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
            +A+   V         M ++G N + VT  +V   I +L + G V +A+  F +M   R
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV---IGILCKSGRVEDAMRYFEQMIDER 439

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             P    YN +I++LC    ++KA+ L+ +M   G  C   ++ +  +I S+CK G    
Sbjct: 440 LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI-CLDTIF-FNSIIDSHCKEG---- 493

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  R+ E+  LF LM+  G  P+++ Y+ LIDG C   +++ A +L   M   G  
Sbjct: 494 -------RVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+ VTYN+ I  Y  ++ ++ A+ + R+M+  + GV P   +Y  I+  L +  R   A+
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFREME--SSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           +    + + G+     TY ++   L+   + +L D+ LR
Sbjct: 605 ELYVGITESGTQLELSTYNII---LHGLCKNNLTDEALR 640



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 105/223 (47%), Gaps = 14/223 (6%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG V E+   F  M +   +P++  Y+ +I+  C  G  ++A  LL  M   G +  PD
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK--PD 548

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
             TY  LI+ YCK             R+ +A  LFR M   G  PD++ YN ++ G  +T
Sbjct: 549 CVTYNTLINGYCKI-----------SRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R   A EL+  + + G      TYN  +      N  D+A+ M + +   +  + T  +
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLET-RT 656

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  +I AL + GR  EA+D  A L   G VP   TY L+ + L
Sbjct: 657 FNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 135/317 (42%), Gaps = 34/317 (10%)

Query: 112 LNKATEFYH-WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           L+KA   YH  ++R      N +T   +     +   +    + L  M +  NG +    
Sbjct: 215 LDKAYGTYHEMLDR--GILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVK--NGVMPNCR 270

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +   ++      G   EA+    +M      PDV  YN +++ LC+ G   +AR + + M
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG------------MQTG------------CRKAIRR 266
              G +  P++ TY  L+  Y   G            ++ G            C  A + 
Sbjct: 331 TKRGLK--PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++ +A  +F  M  +G  PD V Y  +I   CK+ R+E A+  F+ M  +   P  + YN
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYN 448

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELV 385
           S I    + ++ DKA E++ +M  L+ G+   +  +  II + C+ GRV+E+      +V
Sbjct: 449 SLIHSLCIFDKWDKAKELILEM--LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 386 DGGSVPREYTYKLVCDA 402
             G  P   TY  + D 
Sbjct: 507 RIGVKPNIITYSTLIDG 523



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 201 RPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           R D  A+  ++  LC     + A   +L +M   G  C P+V++Y IL+   C       
Sbjct: 123 RVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLG--CIPNVFSYNILLKGLCD------ 174

Query: 260 CRKAIRRRIWEANHLFRLMLFKG--FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                  R  EA  L ++M   G    PDVV+Y  +I+G  K   +++A   + +M  +G
Sbjct: 175 -----ENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRG 229

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
            +PN VTYNS I        +DKA+E++  M   N  +P   +Y  I+H  C +G+  EA
Sbjct: 230 ILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVK-NGVMPNCRTYNSIVHGYCSSGQPKEA 288

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
             FL ++   G  P   TY  + D L
Sbjct: 289 IGFLKKMHSDGVEPDVVTYNSLMDYL 314



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 103/227 (45%), Gaps = 17/227 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  Y ++I + C  G  +     L  +   GFR   D   +T L+   C         
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRV--DAIAFTPLLKGLC--------- 137

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG--CI 319
            A +R     + + R M   G +P+V +YN L+ G C   R + ALEL   M   G  C 
Sbjct: 138 -ADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCP 196

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+ V+Y + I  +    ++DKA     +M  L+ G+ P   +Y  II ALC+A  + +A 
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEM--LDRGILPNVVTYNSIIAALCKAQAMDKAM 254

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           + L  +V  G +P   TY  +     ++ +P      L+K   DG+E
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVE 301



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 87/260 (33%), Gaps = 63/260 (24%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++EA      M     +PD   YN +IN  C++     A  L  +ME  G    PD+ 
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV--SPDII 585

Query: 243 T-----------------------------------YTILISSYCKYGM--------QTG 259
           T                                   Y I++   CK  +        Q  
Sbjct: 586 TYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645

Query: 260 CRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           C   ++                 R  EA  LF  +   G VPDV  Y+ + +   +   +
Sbjct: 646 CLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLL 705

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           E   +LF  M + GC  N    NS +R      +I +A   +  +   +  +  S++   
Sbjct: 706 EELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTA--S 763

Query: 364 IIHALCEAGRVLEARDFLAE 383
           +   L   G+  E   FL E
Sbjct: 764 LFLDLLSGGKYQEYHRFLPE 783


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 13/232 (5%)

Query: 169 TSSVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T   T  +K L      +EA+    +RM +  C PD  +YN VI +LC      +A  ++
Sbjct: 159 TIQATTFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMV 218

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M   G RC PDV ++  +I  + K G            + +A +LF  M+ KG VPDV
Sbjct: 219 QRMAKEGGRCSPDVVSFNTVIHGFFKQG-----------EVSKACNLFNEMVQKGVVPDV 267

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             YN ++D  CK   +++A  +   M  KG  P+ VTYN+ I  YS      ++ +M RK
Sbjct: 268 GTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRK 327

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           M +    +P + +++  + +LC+ GR  +A +    +   G +P   +Y ++
Sbjct: 328 MTSKGL-IPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSIL 378



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 118/258 (45%), Gaps = 30/258 (11%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           +  LI    + G+++EA+  F  M+    RP+V  Y+ +I+A CR+G    A     QM 
Sbjct: 410 INILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMI 469

Query: 232 LPGFRCPPDVYTYTILISSYCKYG------------MQTGCRK-------------AIRR 266
             G    P+   Y  LI  +C +G            M  G  +              I  
Sbjct: 470 SIGIE--PNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEG 527

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           R+ +A  +F L++  G  P +V +N LIDG C   ++E+A  + D M   G  P+ VT N
Sbjct: 528 RVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNN 587

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           + +  Y    +ID  + + R+M  L+  V PT+ +Y  ++  L  AGR   A+    E++
Sbjct: 588 TLVSGYCKSGKIDDGLILFREM--LHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMI 645

Query: 386 DGGSVPREYTYKLVCDAL 403
           D G+     TYK++   L
Sbjct: 646 DSGTAVDIDTYKILLKGL 663



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 120/278 (43%), Gaps = 47/278 (16%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D ++ M++ G        S   +I    ++G V++A   F  M Q    PDV  YN +++
Sbjct: 216 DMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVD 275

Query: 213 ALCRVGNFNKARFLLEQME--------------LPGFRCP-------------------P 239
           ALC+    +KA F+L QM               + G+ C                    P
Sbjct: 276 ALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIP 335

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           D  T++  +SS CK+G           R  +A  +F+ M  KG +PD+V+Y+ L+ G   
Sbjct: 336 DTVTFSSFMSSLCKHG-----------RSKDAEEIFQYMTTKGHMPDIVSYSILLHGYAT 384

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTS 358
             R      LF  M  KG + N    N  I  ++    +D+A+ +  +MQ    GV P  
Sbjct: 385 EGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQ--GQGVRPNV 442

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +Y+ +I A C  GR+ +A +  ++++  G  P    Y
Sbjct: 443 VTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVY 480



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 15/215 (6%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           + G +++ L  F  M   + +P    YN+V++ L R G  + A+ +  +M   G     D
Sbjct: 595 KSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSG--TAVD 652

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           + TY IL+   C+  +             EA  LF  +       D+   N +I+   K 
Sbjct: 653 IDTYKILLKGLCRNDLTD-----------EAITLFHKLGAMDCKFDITILNTMINALYKV 701

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R E A +LF  ++  G +PN  TY   IR       +++A  M   M+  +   P+S  
Sbjct: 702 RRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEK-SGCAPSSRL 760

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
              II  L + G +++A  ++++ VDG  +  E +
Sbjct: 761 LNDIIRMLLQKGDIVKAGYYMSK-VDGTIISLEAS 794



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 17/192 (8%)

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA--NHLFRLMLFKGFVPDVVAYNCLID 295
           P  V TY IL+   C+         A R  +  A    L R  L  G +       CL  
Sbjct: 121 PLTVRTYGILMDCCCR---------ARRPDLGPAFVARLLRAGLKTGTIQATTFLKCL-- 169

Query: 296 GCCKTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-QNLNH 353
             C   R + A++ L   M++  C+P+ ++YN+ I+     +   +A++M+++M +    
Sbjct: 170 --CHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGR 227

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
             P   S+  +IH   + G V +A +   E+V  G VP   TY  + DAL  A      +
Sbjct: 228 CSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAE 287

Query: 414 DGLRKRIRDGIE 425
             LR+ +  G+E
Sbjct: 288 FVLRQMVDKGVE 299



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 18/146 (12%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G  V   +   L+K L    L +EA+  F+++    C+ D+   N +INAL +V    +
Sbjct: 647 SGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREE 706

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------QTGCRKAIRRRIWE 270
           A  L   +   G    P+V TY ++I +  K G             ++GC  + R     
Sbjct: 707 ANDLFAAISTSGL--VPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRL---- 760

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDG 296
            N + R++L KG +     Y   +DG
Sbjct: 761 LNDIIRMLLQKGDIVKAGYYMSKVDG 786


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 120/250 (48%), Gaps = 18/250 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L  VL E G++  A   F RM +FR  P   + N  ++ L + G  + +R     M   G
Sbjct: 68  LFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAG 127

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P V+TY I+I   CK G            +  A  LF  M   G  PD+V YN LI
Sbjct: 128 I--APTVFTYNIMIGHVCKEG-----------DMLTARSLFEQMKKMGLTPDIVTYNTLI 174

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K   ++ ++ LF++M   GC P+ +TYN+ I  +     + +A E  R+M++ +  
Sbjct: 175 DGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLK 234

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPS 410
            P   SY+ +I ALC+ G +  A  F  ++   G +P E+TY  +    C A N  E   
Sbjct: 235 -PNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFM 293

Query: 411 LLDDGLRKRI 420
           L D+ L++ +
Sbjct: 294 LADEMLQEHV 303



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 123/248 (49%), Gaps = 24/248 (9%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           DF +DM   G    V T ++  +I  + +EG +  A + F +MK+    PD+  YN +I+
Sbjct: 118 DFFRDMVGAGIAPTVFTYNI--MIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLID 175

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
              ++G  +++  L E+M+  G  C PDV TY  LI+S+CK+           + +  A 
Sbjct: 176 GYGKIGLLDESVCLFEEMKFMG--CEPDVITYNALINSFCKF-----------KGMLRAF 222

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
             FR M  K   P+V++Y+ LID  CK   ++ A++ F DM + G +PN  TY+S I   
Sbjct: 223 EFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDAN 282

Query: 333 SVVNEIDKAI----EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
                + +A     EM+++  +LN       +YT ++  LCE G + EA +    +   G
Sbjct: 283 CKAGNLGEAFMLADEMLQEHVDLN-----IVTYTTLLDGLCEEGMMNEAEELFRAMGKAG 337

Query: 389 SVPREYTY 396
             P    Y
Sbjct: 338 VTPNLQAY 345



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 135/311 (43%), Gaps = 47/311 (15%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  ++ AR      L++ +K M      ++VT ++   LI   G+ GL++E++  F  
Sbjct: 143 CKEGDMLTARS-----LFEQMKKMGL--TPDIVTYNT---LIDGYGKIGLLDESVCLFEE 192

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           MK   C PDV  YN +IN+ C+     +A     +M+    +  P+V +Y+ LI + CK 
Sbjct: 193 MKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLK--PNVISYSTLIDALCKE 250

Query: 255 GM---------------------------QTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           GM                              C+      + EA  L   ML +    ++
Sbjct: 251 GMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAG---NLGEAFMLADEMLQEHVDLNI 307

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y  L+DG C+   +  A ELF  M K G  PN   Y + I  +  V  +DKA+E+  +
Sbjct: 308 VTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNE 367

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL---- 403
           M+  +   P    +  I+  LC   ++ E +  + E+ + G       Y  + DA     
Sbjct: 368 MREKDIK-PDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAG 426

Query: 404 NAAEEPSLLDD 414
           N  E  +LL++
Sbjct: 427 NRTEAINLLEE 437



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 29/234 (12%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A+  F  M++   +PD+  +  ++  LC      + + ++ +M+  G    P +YT 
Sbjct: 358 MDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYT- 416

Query: 245 TILISSYCKYGMQT------------GCRKAI------------RRRIWEANHLFRLMLF 280
             L+ +Y K G +T            G    +            R  + EA + F  M  
Sbjct: 417 -TLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPD 475

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
               P+V  Y  LIDG CK   I  A +LFD+M  K  IP+++ Y + I          +
Sbjct: 476 HDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQE 535

Query: 341 AIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           A+ M  KM  +  G+     +YT ++  L + G+V +AR FLAE++  G +P E
Sbjct: 536 ALNMRNKMMEM--GIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDE 587



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 112/268 (41%), Gaps = 49/268 (18%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S + LI  L +EG++  A+  F  M +    P+ + Y+ +I+A C+ GN  +A  L ++M
Sbjct: 239 SYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEM 298

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                    ++ TYT L+   C+ GM             EA  LFR M   G  P++ AY
Sbjct: 299 LQE--HVDLNIVTYTTLLDGLCEEGMMN-----------EAEELFRAMGKAGVTPNLQAY 345

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIP------------------------------ 320
             LI G  K   +++A+ELF++M +K   P                              
Sbjct: 346 TALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKE 405

Query: 321 -----NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
                N V Y + +  Y       +AI ++ +M++L   V T  ++  +I  LC+ G V 
Sbjct: 406 SGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEV-TVVTFCALIDGLCKRGLVQ 464

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           EA  +   + D    P    Y  + D L
Sbjct: 465 EAIYYFGRMPDHDLQPNVAVYTALIDGL 492



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 18/219 (8%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M   F  GN  + + + L++M  R  G  VT  +   LI  L + GLV EA+  F RM  
Sbjct: 419 MDAYFKAGNRTEAI-NLLEEM--RDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPD 475

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
              +P+V  Y  +I+ LC+      A+ L ++M+       PD   YT +I    K+G  
Sbjct: 476 HDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNM--IPDKIAYTAMIDGNLKHG-- 531

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                       EA ++   M+  G   D+ AY  L+ G  +  ++++A +   +M  KG
Sbjct: 532 ---------NFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKG 582

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHG 354
            IP+       +R +  +  ID+AIE+  ++  + L HG
Sbjct: 583 IIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGLIHG 621


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 127/266 (47%), Gaps = 16/266 (6%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           +GI F  G   K L   +++M  +G    +T  + T LIK +G+ G V EA + F  M +
Sbjct: 272 LGIYFKLGRVEKAL-GLVQEMKEKGCA--LTVYTYTELIKGVGKAGKVEEAYSIFMNMLK 328

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
             C+PDV   N +IN L + G    A  L E+ME    +C P+V TY  +I +  +    
Sbjct: 329 EGCKPDVVLINNLINLLGKAGRLADAIKLFEEME--SLQCTPNVVTYNTVIKALFES--- 383

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                  + R  EA   +  M   G VP    Y+ LIDG CKT R+E+AL L ++M++KG
Sbjct: 384 -------KARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKG 436

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P    Y S I         + A E+ ++++  N G  ++  Y  +I  L + GR+ EA
Sbjct: 437 FAPCPAAYCSLINALGKAKRYEAANELFQELRE-NCGYSSARVYAVMIKHLGKCGRLSEA 495

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
            D   E+   G  P  Y Y  +   +
Sbjct: 496 VDLFNEMKKLGCNPDVYAYNALMSGM 521



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 156/338 (46%), Gaps = 32/338 (9%)

Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           R+  K+ + ++   +F+ W  +  +F H+  T   +         +  +W  +++M R  
Sbjct: 95  REVLKIDVEIHVKIQFFKWAGKRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRST 154

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
              ++  + ++ ++KVLG+  +VN+AL+ FY++K  +C+P    YN +I  L + G+  K
Sbjct: 155 C--VIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEK 212

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAIR----- 265
              L  +M   G  C PD  TY+ LI+++ K G             + G     +     
Sbjct: 213 VHELYNEMCNEG-DCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTI 271

Query: 266 -------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                   R+ +A  L + M  KG    V  Y  LI G  K  ++E A  +F +M K+GC
Sbjct: 272 LGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGC 331

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLEA 377
            P+ V  N+ I        +  AI++  +M++L    P   +Y  +I AL E+  R  EA
Sbjct: 332 KPDVVLINNLINLLGKAGRLADAIKLFEEMESL-QCTPNVVTYNTVIKALFESKARASEA 390

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLL 412
             +  ++ + G VP  +TY ++ D     N  E+  LL
Sbjct: 391 FLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLL 428



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 13/163 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +IK LG+ G ++EA+  F  MK+  C PDVYAYN +++ + RVG  ++A  LL  ME  G
Sbjct: 482 MIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENG 541

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD+ ++ I+++ + + G   G           A  +F  M      PDVV+YN ++
Sbjct: 542 --CTPDLNSHNIILNGFARTGGPKG-----------AIEMFTRMKNSKIKPDVVSYNTVL 588

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
               +    E A +L  +MN KG   + +TY+S +     ++E
Sbjct: 589 GCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKIDE 631



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 114/295 (38%), Gaps = 65/295 (22%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL-------------------- 214
           LI +LG+ G + +A+  F  M+  +C P+V  YN VI AL                    
Sbjct: 341 LINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKEN 400

Query: 215 ----------------CRVGNFNKARFLLEQMELPGFR-CPPDVYTYTILISSYCKYG-- 255
                           C+     KA  LLE+M+  GF  CP     Y  LI++  K    
Sbjct: 401 GVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPA---AYCSLINALGKAKRY 457

Query: 256 ---------MQTGCRKAIRR-------------RIWEANHLFRLMLFKGFVPDVVAYNCL 293
                    ++  C  +  R             R+ EA  LF  M   G  PDV AYN L
Sbjct: 458 EAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNAL 517

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           + G  +    + A  L   M + GC P+  ++N  +  ++       AIEM  +M+N + 
Sbjct: 518 MSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKN-SK 576

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
             P   SY  ++  L  AG   EA   + E+   G      TY  + +A+   +E
Sbjct: 577 IKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKIDE 631


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 133/292 (45%), Gaps = 45/292 (15%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +  +K M R+G   +  TS+ + +I  L E   V +A   F  MK     PDVY Y ++I
Sbjct: 440 FQIIKLMMRKGF--VPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILI 497

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY-------------------- 251
           ++ C+VG   +AR   ++ME  G  C P V TYT L+ +Y                    
Sbjct: 498 DSFCKVGLIEQARSWFDEMESVG--CSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAG 555

Query: 252 ---------------CKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-----FVPDVVAYN 291
                          CK G      +   + I  ++++     F+G       P+VV Y 
Sbjct: 556 CAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYG 615

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            LIDG CK +++  A EL D M+  GC PN + Y++ I  +  V ++D A E+  +M   
Sbjct: 616 ALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKC 675

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            + +PT  +YT +I A+ +  R+  A   L+++++    P   TY  + D L
Sbjct: 676 GY-LPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGL 726



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 134/332 (40%), Gaps = 69/332 (20%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           FA+    +G W     M  R + +L  T   T +I  L E  L +EA++  +RM+   C 
Sbjct: 248 FAQALCKEGRWSDALVMIEREDFKL-DTVLCTQMISGLMEASLFDEAISFLHRMRCNSCI 306

Query: 202 PDVYAY-----------------------------------NVVINALCRVGNFNKARFL 226
           P+V  Y                                   N ++++ C   ++  A  L
Sbjct: 307 PNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKL 366

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCK-YGMQTGCRKAIRRRIWE--------------- 270
           L +M   G  CPP    Y I I S C    + +    A+  +++E               
Sbjct: 367 LNRM--AGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTA 424

Query: 271 --------------ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                         A  + +LM+ KGFVPD   Y+ +I   C+  ++E+A  LF +M   
Sbjct: 425 NFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSV 484

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           G IP+  TY   I  +  V  I++A     +M+++    P+  +YT ++HA  +  +V +
Sbjct: 485 GVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCS-PSVVTYTALLHAYLKTKQVPQ 543

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           A D    +VD G  P   TY  + D L  A E
Sbjct: 544 ASDIFHRMVDAGCAPNTITYSALVDGLCKAGE 575



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 141/334 (42%), Gaps = 37/334 (11%)

Query: 57  RFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTL-----G 111
           R +F    S+G        T L    LK +    A+++      A   P  +T      G
Sbjct: 510 RSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDG 569

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           L KA E             ++  C+    +    +NV   + F  + +      +VT  +
Sbjct: 570 LCKAGE-------------SQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGA 616

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              LI  L +   V +A      M    C P+   Y+ +I+  C+VG  + A+ +  +M 
Sbjct: 617 ---LIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMS 673

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G+   P V+TYT LI +  K            RR+  A  +   ML     P+VV Y 
Sbjct: 674 KCGYL--PTVHTYTSLIDAMFK-----------DRRLDLAIKVLSQMLESSCTPNVVTYT 720

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +IDG C+    ++AL+L   M K+GC PN VTY S I       ++D ++++  +M  +
Sbjct: 721 AMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQM--I 778

Query: 352 NHG-VPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
             G  P   +Y  +I+  C AG + EA   L+E+
Sbjct: 779 TQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEM 812



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 115/264 (43%), Gaps = 48/264 (18%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L T  + T LI  + ++  ++ A+    +M +  C P+V  Y  +I+ LCR+G   KA
Sbjct: 676 GYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKA 735

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LL  ME  G  C P+V TYT LI    K G           ++  +  LF  M+ +G 
Sbjct: 736 LKLLSMMEKRG--CNPNVVTYTSLIDGLGKSG-----------KVDMSLQLFTQMITQGC 782

Query: 284 VPDVVAYNCLIDGCCKTYRIERA---------------------------------LELF 310
            P+ V Y  LI+ CC    ++ A                                 L L 
Sbjct: 783 APNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLL 842

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS--SYTPIIHAL 368
           +++   G +     Y   I  +S    ++KA+E+ ++M  ++  +  +S  +YT +I AL
Sbjct: 843 EELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQAL 902

Query: 369 CEAGRVLEARDFLAELVDGGSVPR 392
           C A ++ +A +  +E+   G VP 
Sbjct: 903 CLASQLEKAFELYSEITRKGVVPE 926



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 16/232 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G ++ A   F+RM +    P V+ Y  +I+A+ +    + A  +L QM    
Sbjct: 652 LIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESS 711

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+V TYT +I   C+ G    C+KA++        L  +M  +G  P+VV Y  LI
Sbjct: 712 --CTPNVVTYTAMIDGLCRIG---ECQKALK--------LLSMMEKRGCNPNVVTYTSLI 758

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K+ +++ +L+LF  M  +GC PN VTY   I +      +D+A  ++ +M+   + 
Sbjct: 759 DGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQ-TYW 817

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
                 Y  ++     + + + +   L EL   G V     Y L+ D+ + A
Sbjct: 818 PKYVQGYCSVVQGF--SKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKA 867



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 14/172 (8%)

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC +G F+KA  +++ M   GF   PD  TY+ +I+  C+             ++ +A  
Sbjct: 430 LCGMGKFDKAFQIIKLMMRKGF--VPDTSTYSKVITFLCE-----------AMKVEKAFL 476

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF+ M   G +PDV  Y  LID  CK   IE+A   FD+M   GC P+ VTY + +  Y 
Sbjct: 477 LFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYL 536

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              ++ +A ++  +M +     P + +Y+ ++  LC+AG   +A +  A+++
Sbjct: 537 KTKQVPQASDIFHRMVDAGCA-PNTITYSALVDGLCKAGESQKACEVYAKMI 587



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 94/230 (40%), Gaps = 49/230 (21%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            L  M +RG N  +VT +S   LI  LG+ G V+ +L  F +M    C P+   Y V+IN
Sbjct: 738 LLSMMEKRGCNPNVVTYTS---LIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLIN 794

Query: 213 ALCRVGNFNKARFLLEQM-------------------------------ELPGFRCPPDV 241
             C  G  ++A  LL +M                               EL         
Sbjct: 795 HCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMVSIA 854

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA---YNCLIDGCC 298
             Y +LI S+ K G           R+ +A  L + M+      ++ +   Y  LI   C
Sbjct: 855 PVYGLLIDSFSKAG-----------RLEKALELHKEMMEVSSSLNITSKDTYTSLIQALC 903

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
              ++E+A EL+ ++ +KG +P    +   I+    VN+ ++A+++   M
Sbjct: 904 LASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSM 953



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 108/299 (36%), Gaps = 24/299 (8%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
           F+ W ER   + H       +  V    +  +     L+++    +   V    +  +++
Sbjct: 123 FFLWAERQVGYSHTGACYNALAEVLHFDDRARTTERLLREIGE--DDREVLGRLLNVIVR 180

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
                G   +AL    R+K F  RP    YN ++  L   G  +    + ++M   GF  
Sbjct: 181 KCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGF-- 238

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
             D +T      + CK G  +     I R              + F  D V    +I G 
Sbjct: 239 CTDKFTVGCFAQALCKEGRWSDALVMIER--------------EDFKLDTVLCTQMISGL 284

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-P 356
            +    + A+     M    CIPN VTY + +  +    ++     ++  M  +N G  P
Sbjct: 285 MEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMM--MNEGCNP 342

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE---PSLL 412
             S +  ++H+ C A     A   L  +   G  P    Y +   ++ + EE   P LL
Sbjct: 343 NPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLL 401


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 136/290 (46%), Gaps = 29/290 (10%)

Query: 150 GLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           G W+     L++M   G    V T S T  I    ++G   EA+     M      P+  
Sbjct: 340 GQWEEAVALLREMQENGVAPDVITYSST--ISACAKKGQWEEAVGLLREMPMEGVTPNAI 397

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           +Y +VI+A  + G + +A  LL++M+  G   PPDV  Y+  I +         C +A R
Sbjct: 398 SYGIVISACAKRGRWREAIDLLQEMQAHGV--PPDVINYSAAIDA---------CAQASR 446

Query: 266 RRIWE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              WE A  L R M   G  P+V++YN  ID C KT R + A+EL  +M   G  P+ +T
Sbjct: 447 ---WEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVIT 503

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAE 383
           Y++ I   ++  + ++A+++ R+MQ    G+ P   S    I+A  + G   EA D L E
Sbjct: 504 YSAVIASCAMGRQWEEALDLFREMQ--RQGITPDVVSCNTAINACAQGGWWEEALDVLGE 561

Query: 384 LVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR-----IRDGIEYRF 428
           +   G VP   +Y+   DA    +    + D LR+        D I YRF
Sbjct: 562 MPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRF 611



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 106/245 (43%), Gaps = 16/245 (6%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           S +G G        +  I    + G    A+     M      PDV  Y+ VI+A  + G
Sbjct: 246 SMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAKRG 305

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
            +  A  LL  ME+P      ++ TY+I+I +  K+G              EA  L R M
Sbjct: 306 QWEPAFRLL--MEMPTKGVVANIITYSIVIGACAKWGQWE-----------EAVALLREM 352

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
              G  PDV+ Y+  I  C K  + E A+ L  +M  +G  PN ++Y   I   +     
Sbjct: 353 QENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRW 412

Query: 339 DKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            +AI+++++MQ   HGVP    +Y+  I A  +A R  +A   L E+   G  P   +Y 
Sbjct: 413 REAIDLLQEMQ--AHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYN 470

Query: 398 LVCDA 402
              DA
Sbjct: 471 SAIDA 475



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 97/202 (48%), Gaps = 16/202 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  Y+  I A  +V  + +A  LL  M+  G +  P+V  Y+  IS+ C+ G Q    
Sbjct: 219 PDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVK--PNVIVYSAAISA-CRKGGQ---- 271

Query: 262 KAIRRRIWE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  WE A  L + M   G  PDV+ Y+ +ID C K  + E A  L  +M  KG + 
Sbjct: 272 -------WETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVA 324

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N +TY+  I   +   + ++A+ ++R+MQ  N   P   +Y+  I A  + G+  EA   
Sbjct: 325 NIITYSIVIGACAKWGQWEEAVALLREMQE-NGVAPDVITYSSTISACAKKGQWEEAVGL 383

Query: 381 LAELVDGGSVPREYTYKLVCDA 402
           L E+   G  P   +Y +V  A
Sbjct: 384 LREMPMEGVTPNAISYGIVISA 405



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 114/289 (39%), Gaps = 35/289 (12%)

Query: 149 KGLW----DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           +G W    D L++M   G    V   S    I    +     +AL     M      P+V
Sbjct: 409 RGRWREAIDLLQEMQAHGVPPDVINYSAA--IDACAQASRWEQALWLLREMPATGLTPNV 466

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ------- 257
            +YN  I+A  + G    A  LL   E+P     PDV TY+ +I+S C  G Q       
Sbjct: 467 ISYNSAIDACAKTGRSKIAVELLR--EMPAHGLAPDVITYSAVIAS-CAMGRQWEEALDL 523

Query: 258 -------------TGCRKAI----RRRIWE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
                          C  AI    +   WE A  +   M   G VPD ++Y   ID C K
Sbjct: 524 FREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAK 583

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             R +  ++L  +M+  G  P+ ++Y   +   SV     +A+ ++R M  +    P   
Sbjct: 584 GDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLS-PDVV 642

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           +Y   I+A  + GR  EA   L ++   G  P   ++    DA    ++
Sbjct: 643 TYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACGNGDQ 691



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 22/218 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           D  ++M R+G    +T   V+C   I    + G   EAL     M      PD  +Y   
Sbjct: 522 DLFREMQRQG----ITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTA 577

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           I+A  +   + +   LL +M   G    PD  +Y   +S+    G+             E
Sbjct: 578 IDACAKGDRWKEIIDLLREMSTVGLT--PDAISYRFAMSACSVDGLWK-----------E 624

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L R ML  G  PDVV YN  I+ C K  R + A  L   M   G  P+  ++N+ I 
Sbjct: 625 ALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAID 684

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
                ++   A+E++ +M+ L  GV P  ++Y   ++A
Sbjct: 685 ACGNGDQWGTAVEVLFEMRAL--GVSPNEATYLTAMYA 720



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 16/186 (8%)

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE-ANHLFR 276
           G++ KA  +L++M+  G +  PD   Y+  I++         C  A   R WE A  L  
Sbjct: 165 GDWRKALDVLDRMQEQGVK--PDSQNYSSAIAA---------CGNA---RQWERAVELLA 210

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M  +G  PDV+ Y+  I  C K  R + A+ L   M  +G  PN + Y++ I       
Sbjct: 211 SMAARGTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGG 270

Query: 337 EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           + + A++++++M  +    P   +Y+ +I A  + G+   A   L E+   G V    TY
Sbjct: 271 QWETAVDLLKEMPAVGL-APDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITY 329

Query: 397 KLVCDA 402
            +V  A
Sbjct: 330 SIVIGA 335


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 128/270 (47%), Gaps = 21/270 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + + ++V+ L+  L ++G +  A     ++K+F   P ++ YN +IN++C+ G  ++A
Sbjct: 315 GFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEA 374

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L   M   G   P DV TY+ILI S+CK G           ++  A H    M   G 
Sbjct: 375 ESLFNNMGHKGLF-PNDV-TYSILIDSFCKRG-----------KLDVALHFLGKMTEVGI 421

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
              V  Y+ LI G CK  ++  A  LFD+M   G  PN V Y S I  Y    E+  A  
Sbjct: 422 KATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFR 481

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV--- 399
           +  +M     G+ P + ++T +I  LC A R+ EA     E+V+   +P E TY ++   
Sbjct: 482 LYHEMT--GKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEG 539

Query: 400 -CDALNAAEEPSLLDDGLRKR-IRDGIEYR 427
            C   N      LLD+ + K  + D   YR
Sbjct: 540 HCKEGNTVRAFELLDEMVEKGLVPDTYTYR 569



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 120/262 (45%), Gaps = 33/262 (12%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G ++ AL    +M +   +  VY Y+ +I+  C++G    A+ L ++M   G
Sbjct: 396 LIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANG 455

Query: 235 FRCPPDVYTYTILISSYCKYG-MQTGCR-------KAIR----------------RRIWE 270
            +  P+V  YT LIS YCK G +    R       K I                  R+ E
Sbjct: 456 LK--PNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAE 513

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           AN LF  M+    +P+ V YN LI+G CK     RA EL D+M +KG +P+  TY   I 
Sbjct: 514 ANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLIS 573

Query: 331 YYSVVNEIDKAIEMM-------RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
                  + +A E M       +K+  +   +P   +YT +I+ LC+ G + +A     E
Sbjct: 574 GLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCRE 633

Query: 384 LVDGGSVPREYTYKLVCDALNA 405
           ++   S+P + TY    D L +
Sbjct: 634 MLASNSLPNQNTYACFLDYLTS 655



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 126/272 (46%), Gaps = 12/272 (4%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G    T + T LI  L     + EA   F  M ++   P+   YNV+I   C+ GN  
Sbjct: 488 GKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTV 547

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A  LL++M   G    PD YTY  LIS  C  G  +  R+ +     E   L  +   +
Sbjct: 548 RAFELLDEMVEKGL--VPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEI---E 602

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G +P+VV Y  LI+G CK   +++A  L  +M     +PN+ TY  F+ Y +    I+KA
Sbjct: 603 GCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKA 662

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV-- 399
           I++   +  L   +  + +Y  +I   C+ GR+ EA + L  ++D G  P   +Y  +  
Sbjct: 663 IQLHDVL--LEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIY 720

Query: 400 --CDALNAAEEPSLLDDGLRKRIR-DGIEYRF 428
             C   +  E   L +  L + +  D + Y F
Sbjct: 721 EYCRRGDLKEAIKLWESMLNRGVNPDTVAYNF 752



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 16/217 (7%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           AL  F  +     RPDVY Y  V+ +LC + +F +AR ++ +ME  G  C   V TY + 
Sbjct: 199 ALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSG--CDLSVATYNVF 256

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I   CK            +R+WEA  +  L+ +KG   DV  Y  L+ G CK    E   
Sbjct: 257 IRGLCK-----------NQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGE 305

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
           E+ ++M + G +P+    ++ +        I  A +++ K++    GV P+   Y  +I+
Sbjct: 306 EMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKF--GVAPSLFVYNALIN 363

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++C+ G++ EA      +   G  P + TY ++ D+ 
Sbjct: 364 SMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSF 400



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 117/253 (46%), Gaps = 34/253 (13%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL-----EQ 229
           LI+   +EG    A      M +    PD Y Y  +I+ LC  G  ++AR  +     EQ
Sbjct: 536 LIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQ 595

Query: 230 MELPGFR-CPPDVYTYTILISSYCKYGM----QTGCRKAIRRR----------------- 267
            +L     C P+V TYT LI+  CK G+    +  CR+ +                    
Sbjct: 596 QKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTS 655

Query: 268 ---IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              I +A  L  ++L +GF+ + V YN LI G CK  RI+ A E+  +M   G  P+ ++
Sbjct: 656 EGNIEKAIQLHDVLL-EGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCIS 714

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAE 383
           Y++ I  Y    ++ +AI++   M  LN GV P + +Y  +I+  C  G + +A +   +
Sbjct: 715 YSTIIYEYCRRGDLKEAIKLWESM--LNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDD 772

Query: 384 LVDGGSVPREYTY 396
           ++  G  P   TY
Sbjct: 773 MMRRGVKPNRATY 785



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 18/197 (9%)

Query: 150 GLWDFLKDMSRR--GNGELVTTSSVTCLIKVLGEEGLVNEALATF-YRMKQFRCRPDVYA 206
           GL D  + + R    +  L   ++  C +  L  EG + +A+      ++ F    +   
Sbjct: 622 GLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFL--ANTVT 679

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN++I   C++G   +A  +L  M   G    PD  +Y+ +I  YC+ G     ++AI+ 
Sbjct: 680 YNILIRGFCKLGRIQEAAEVLVNMIDSGI--SPDCISYSTIIYEYCRRG---DLKEAIK- 733

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            +WE+      ML +G  PD VAYN LI GCC T  + +A EL DDM ++G  PNR TYN
Sbjct: 734 -LWES------MLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYN 786

Query: 327 SFIRYYSVVNEIDKAIE 343
           S I    +++ +    +
Sbjct: 787 SLIHGTCLMSSVSSTAD 803



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 20/172 (11%)

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           R+   A HLF  ++  G  PDV  Y  ++   C+     RA E+   M   GC  +  TY
Sbjct: 194 RQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATY 253

Query: 326 NSFIRYYSVVNEIDKAIEM--MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           N FIR       + +A+E+  +   + L   V T   Y  ++  LC+        + + E
Sbjct: 254 NVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGT---YCTLVLGLCKVEEFEAGEEMMNE 310

Query: 384 LVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVK 435
           +++ G VP E                S L DGLRK  +  I   F  V KVK
Sbjct: 311 MIEFGFVPSEAAV-------------SNLVDGLRK--KGNIGSAFDLVNKVK 347



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 13/148 (8%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L  T +   LI+   + G + EA      M      PD  +Y+ +I   CR G+  +A
Sbjct: 672 GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEA 731

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L E M   G    PD   Y  LI   C  G  T           +A  L   M+ +G 
Sbjct: 732 IKLWESMLNRGVN--PDTVAYNFLIYGCCVTGELT-----------KAFELRDDMMRRGV 778

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFD 311
            P+   YN LI G C    +    + F 
Sbjct: 779 KPNRATYNSLIHGTCLMSSVSSTADYFS 806



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           RR  +   + RLM+  G +P +   + +++G  +  +   AL LFD++   G  P+   Y
Sbjct: 159 RRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVY 218

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEA 377
            + +R    + +  +A E++ +M+  + G   S ++Y   I  LC+  RV EA
Sbjct: 219 TAVVRSLCELKDFIRAREVIGRME--SSGCDLSVATYNVFIRGLCKNQRVWEA 269


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 127/266 (47%), Gaps = 16/266 (6%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           +GI F  G   K L   +++M  +G    +T  + T LIK +G+ G V EA + F  M +
Sbjct: 272 LGIYFKLGRVEKAL-GLVQEMKEKGCA--LTVYTYTELIKGVGKAGKVEEAYSIFMNMLK 328

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
             C+PDV   N +IN L + G    A  L E+ME    +C P+V TY  +I +  +    
Sbjct: 329 EGCKPDVVLINNLINLLGKAGRLADAIKLFEEME--SLQCTPNVVTYNTVIKALFES--- 383

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                  + R  EA   +  M   G VP    Y+ LIDG CKT R+E+AL L ++M++KG
Sbjct: 384 -------KARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKG 436

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P    Y S I         + A E+ ++++  N G  ++  Y  +I  L + GR+ EA
Sbjct: 437 FAPCPAAYCSLINALGKAKRYEAANELFQELRE-NCGYSSARVYAVMIKHLGKCGRLSEA 495

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
            D   E+   G  P  Y Y  +   +
Sbjct: 496 VDLFNEMKKLGCNPDVYAYNALMSGM 521



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 156/338 (46%), Gaps = 32/338 (9%)

Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           R+  K+ + ++   +F+ W  +  +F H+  T   +         +  +W  +++M R  
Sbjct: 95  REVLKIDVEIHVKIQFFKWAGKRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRST 154

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
              ++  + ++ ++KVLG+  +VN+AL+ FY++K  +C+P    YN +I  L + G+  K
Sbjct: 155 C--VIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEK 212

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAIR----- 265
              L  +M   G  C PD  TY+ LI+++ K G             + G     +     
Sbjct: 213 VHELYNEMCNEG-DCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTI 271

Query: 266 -------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                   R+ +A  L + M  KG    V  Y  LI G  K  ++E A  +F +M K+GC
Sbjct: 272 LGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGC 331

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLEA 377
            P+ V  N+ I        +  AI++  +M++L    P   +Y  +I AL E+  R  EA
Sbjct: 332 KPDVVLINNLINLLGKAGRLADAIKLFEEMESL-QCTPNVVTYNTVIKALFESKARASEA 390

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLL 412
             +  ++ + G VP  +TY ++ D     N  E+  LL
Sbjct: 391 FLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLL 428



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 13/163 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +IK LG+ G ++EA+  F  MK+  C PDVYAYN +++ + RVG  ++A  LL  ME  G
Sbjct: 482 MIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENG 541

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD+ ++ I+++ + + G   G           A  +F  M      PDVV+YN ++
Sbjct: 542 --CTPDLNSHNIILNGFARTGGPKG-----------AIEMFTRMKNSKIKPDVVSYNTVL 588

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
               +    E A +L  +MN KG   + +TY+S +     ++E
Sbjct: 589 GCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKIDE 631



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 115/298 (38%), Gaps = 65/298 (21%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL----------------- 214
           +  LI +LG+ G + +A+  F  M+  +C P+V  YN VI AL                 
Sbjct: 338 INNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKM 397

Query: 215 -------------------CRVGNFNKARFLLEQMELPGFR-CPPDVYTYTILISSYCKY 254
                              C+     KA  LLE+M+  GF  CP     Y  LI++  K 
Sbjct: 398 KENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPA---AYCSLINALGKA 454

Query: 255 G-----------MQTGCRKAIRR-------------RIWEANHLFRLMLFKGFVPDVVAY 290
                       ++  C  +  R             R+ EA  LF  M   G  PDV AY
Sbjct: 455 KRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAY 514

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L+ G  +    + A  L   M + GC P+  ++N  +  ++       AIEM  +M+N
Sbjct: 515 NALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKN 574

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            +   P   SY  ++  L  AG   EA   + E+   G      TY  + +A+   +E
Sbjct: 575 -SKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKIDE 631


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 132/291 (45%), Gaps = 17/291 (5%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           N A E + W  +   F HN  TC  +  V+ +   V+    F +  S   N       S 
Sbjct: 83  NTAWEVFQWAGKQSKFTHNRFTCNNLLSVYVKARRVEDAHLFFQ--SHMKNVFEPDEVSY 140

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             L+    + G V +ALA F  MK       + ++N+V+  LC  G  + A  + + M  
Sbjct: 141 NTLMNGFFKAGDVKKALALFGEMKDSGIAV-LRSHNIVLRGLCSGGKISMAWEVFKDMS- 198

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P++ +YTI+I   CK            R++ +A  LF+ M+ K   PDVV Y  
Sbjct: 199 -GI-FSPNLISYTIMIDGLCK-----------SRKVDKAITLFKQMVDKAIYPDVVTYGA 245

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LIDG  K  R++ A +LF++   KGC P  VTYN+ I        I+ A+ +   M    
Sbjct: 246 LIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREP 305

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           H  P   +Y+ +I+ L  + R  +A +   E++D G  P   TY  + D L
Sbjct: 306 HLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGL 356



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 16/230 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + LI  L       +A   +  M    C PDV  YN +++ LC+ G  +KA  +  +M
Sbjct: 313 TYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKM 372

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G  C P+V TYT+LI  +CK             R+ +A  L + M  +  +PD V +
Sbjct: 373 GV-GNVCDPNVITYTVLIDRFCKVD-----------RLGDAVKLAKEMEGRSLLPDAVTF 420

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             +I   CK  RI+ A ELF+ + K  C P+ V +N+ +  Y  +  ID A ++  +M  
Sbjct: 421 TTVIQKLCKESRIDEAHELFESIGKT-CKPDSVLFNTMLAGYCKITRIDDAKKLHDRM-- 477

Query: 351 LNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           L+ G  PT ++YT ++   C  GR  +A     E+++ G  P  +  +LV
Sbjct: 478 LDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPERHLAELV 527



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 16/212 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-ELP 233
           LI  LG++  V EA   F   +   C P V  YN +I+ LC+ G    A  L + M   P
Sbjct: 246 LIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREP 305

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
             +  PD++TY+ LI+              +  R  +A  L+  ML  G  PDVV YN L
Sbjct: 306 HLK--PDMFTYSALINGL-----------NLSNRGEKAYELYEEMLDTGCSPDVVTYNTL 352

Query: 294 IDGCCKTYRIERALELFDDMNKKG-CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +DG CK+   ++A+E+F  M     C PN +TY   I  +  V+ +  A+++ ++M+  +
Sbjct: 353 LDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRS 412

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
             +P + ++T +I  LC+  R+ EA +    +
Sbjct: 413 L-LPDAVTFTTVIQKLCKESRIDEAHELFESI 443



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 128/280 (45%), Gaps = 28/280 (10%)

Query: 136 KEMGIVFARGNNV--KGL---------WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL 184
           K+ GI   R +N+  +GL         W+  KDMS   +  L+   S T +I  L +   
Sbjct: 164 KDSGIAVLRSHNIVLRGLCSGGKISMAWEVFKDMSGIFSPNLI---SYTIMIDGLCKSRK 220

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A+  F +M      PDV  Y  +I+ L +     +A  L E+    G  C P V TY
Sbjct: 221 VDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG--CHPTVVTY 278

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PDVVAYNCLIDGCCKTYRI 303
             +I   CK G           RI  A  L+  M+ +  + PD+  Y+ LI+G   + R 
Sbjct: 279 NTMIDGLCKCG-----------RIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRG 327

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           E+A EL+++M   GC P+ VTYN+ +         DKA+E+ RKM   N   P   +YT 
Sbjct: 328 EKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTV 387

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +I   C+  R+ +A     E+     +P   T+  V   L
Sbjct: 388 LIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKL 427


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 131/287 (45%), Gaps = 16/287 (5%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           N A  FY W  +      +    K M  V +R      +W  +++M R+ N  L+T    
Sbjct: 111 NLAYRFYSWASKQSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEEM-RQENPHLITPQVF 169

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             L++      +V++A+     M  + C PD Y +  +++AL + G+  +A  L E++  
Sbjct: 170 VILMRRFASARMVHKAVQVLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEELR- 228

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
             +R  P V  +T L+  +CK G           ++ EA H+   M   G  PD+V YN 
Sbjct: 229 --YRWKPSVKHFTSLLYGWCKEG-----------KLMEAKHVLVQMKDAGIEPDIVVYNN 275

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+ G  +  ++  A +L  +M +KGC PN  +Y   I+       +++A  +  +MQ  N
Sbjct: 276 LLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVFVEMQR-N 334

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
                  +Y+ +I   C+ G++    + L E++  G  P +  Y+ +
Sbjct: 335 GCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHI 381



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 14/236 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           +    T L+    +EG + EA     +MK     PD+  YN ++    +      A  LL
Sbjct: 234 SVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLL 293

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M   G  C P+  +YT+LI S CK+            R+ EA  +F  M   G   D+
Sbjct: 294 KEMRRKG--CEPNATSYTVLIQSLCKH-----------ERLEEATRVFVEMQRNGCQADL 340

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y+ LI G CK  +I+R  EL D+M ++G  PN+V Y   +  +    E+++  E++ +
Sbjct: 341 VTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEECKELVNE 400

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           MQ +    P  S Y  +I   C+ G V E      E+   G  P   T+ ++ +  
Sbjct: 401 MQKIG-CAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGF 455



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 124/292 (42%), Gaps = 52/292 (17%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           +A+ + +   +D LK+M R+G       +S T LI+ L +   + EA   F  M++  C+
Sbjct: 280 YAQADKMGDAYDLLKEMRRKGCEP--NATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQ 337

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            D+  Y+ +I+  C+ G   +   LL++M   G    P+   Y  ++ ++ K      C+
Sbjct: 338 ADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGH--FPNQVIYQHIMVAHEKKEELEECK 395

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
           + +       N + ++    G  PD+  YN +I   CK   ++  + L+++M   G  P+
Sbjct: 396 ELV-------NEMQKI----GCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPS 444

Query: 322 RVTY----NSFIR-----------------------YYSVVNEI------DKAIEMMRKM 348
             T+    N F+                         Y  + E+       + +EM +  
Sbjct: 445 IDTFVIMINGFLEQGCLVEACEYFKEMVGRGLFAAPQYGTLKELMNSLLRAEKLEMAKDA 504

Query: 349 QN---LNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            N    + G   + S++T  IHAL   G V EA  F   ++D   +P+  T+
Sbjct: 505 WNCITASKGCQLNVSAWTIWIHALFSKGHVKEACSFCIAMMDKDLMPQPDTF 556



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 92/210 (43%), Gaps = 24/210 (11%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M++  C PD+  YN VI   C++G   +   L  +ME  G    P + T+ I+I+ +   
Sbjct: 401 MQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGL--SPSIDTFVIMINGF--- 455

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGF--VPDVVAYNCLIDGCCKTYRIERALELFDD 312
            ++ GC       + EA   F+ M+ +G    P       L++   +  ++E A + ++ 
Sbjct: 456 -LEQGC-------LVEACEYFKEMVGRGLFAAPQYGTLKELMNSLLRAEKLEMAKDAWNC 507

Query: 313 MN-KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
           +   KGC  N   +  +I        + +A      M + +  +P   ++  ++  L   
Sbjct: 508 ITASKGCQLNVSAWTIWIHALFSKGHVKEACSFCIAMMDKDL-MPQPDTFAKLMRGL--- 563

Query: 372 GRVLEARDFLAEL---VDGGSVPREYTYKL 398
            + L  R+F AE+   V   +  R+ T+K+
Sbjct: 564 -KKLYNREFAAEITEKVRKMAADRKITFKM 592



 Score = 45.1 bits (105), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 86/235 (36%), Gaps = 53/235 (22%)

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM--ELPGFRCPPDVYTYTILISS 250
           +  KQ   R D  AY  +I  L R+  F     L+E+M  E P    P     + IL+  
Sbjct: 119 WASKQSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQ---VFVILMRR 175

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           +           A  R + +A  +   M   G  PD   + CL+D   K   ++ A  LF
Sbjct: 176 F-----------ASARMVHKAVQVLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLF 224

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
           +++                RY                        P+   +T +++  C+
Sbjct: 225 EEL----------------RY---------------------RWKPSVKHFTSLLYGWCK 247

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
            G+++EA+  L ++ D G  P    Y  +      A++     D L++  R G E
Sbjct: 248 EGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCE 302


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 137/310 (44%), Gaps = 23/310 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R   +   W   K+M   G G  V T +V  LI  L   G +++A   + +M+     
Sbjct: 280 LGRARRIDDAWGIFKEMDDEGCGPDVITYTV--LIDALCAAGKLDKAKELYVKMRASSHS 337

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   Y  +++   +VG+    +    +ME+ G+   PDV TYTILI + CK G      
Sbjct: 338 PDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGY--APDVVTYTILIEALCKSG------ 389

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 +  A  +  +M  KG  P++  YN +I G  K  R++ ALEL ++M   G  P 
Sbjct: 390 -----DVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPT 444

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
             +Y  FI YY    +  KAI+    M+    G+ P+ ++    ++ L E GR+ EA D 
Sbjct: 445 AFSYVLFIDYYGKSGDPAKAIDTFETMKK--RGIMPSIAACNASLYTLAETGRISEAEDI 502

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKH 440
             +L   G  P   TY ++    + A +       L + I  G E     VM +  ++  
Sbjct: 503 FNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCE---PDVMIINSLI-- 557

Query: 441 KELLKCGEID 450
             L K G +D
Sbjct: 558 NTLYKAGRVD 567



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 122/243 (50%), Gaps = 16/243 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G ++   S   LI +L   G  NEAL  + RM     +P +  Y+ ++ AL R G+  K 
Sbjct: 196 GFILNAYSYNGLIHLL-LPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKI 254

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LLE+M+  G R  P++YTYTI I +  +            RRI +A  +F+ M  +G 
Sbjct: 255 MNLLEEMKSIGLR--PNIYTYTICIRALGR-----------ARRIDDAWGIFKEMDDEGC 301

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PDV+ Y  LID  C   ++++A EL+  M      P+RVTY + +  +  V +++    
Sbjct: 302 GPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKR 361

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK-LVCDA 402
              +M+ ++   P   +YT +I ALC++G V  A D L  +   G  P  +TY  ++C  
Sbjct: 362 FWNEME-VDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGL 420

Query: 403 LNA 405
           L A
Sbjct: 421 LKA 423



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 115/250 (46%), Gaps = 19/250 (7%)

Query: 168  TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
            T  S  CL+  L       +AL  F  MK     P+ + YN++++A  +    NK   L 
Sbjct: 795  TLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLY 854

Query: 228  EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
             +M   G  C P+  T+ I+IS+  K              + +A  L+  ++   F P  
Sbjct: 855  SEMRSRG--CEPNAITHNIIISALVK-----------SNNLNKALDLYYELMSGDFSPTP 901

Query: 288  VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
              Y  LIDG  K  R E+A+++F++M   GC PN V YN  I  +    EID A E+ +K
Sbjct: 902  CTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKK 961

Query: 348  MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            M  +  G+ P   SYT ++  LC  GR+ EA  +  EL   G  P   +Y  + + L  +
Sbjct: 962  M--VKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKS 1019

Query: 407  EEPSLLDDGL 416
                 LD+ L
Sbjct: 1020 RR---LDEAL 1026



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 14/222 (6%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            LI  L + G   +A+  F  M  + C P+   YN++IN   + G  + A  L ++M   G
Sbjct: 907  LIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEG 966

Query: 235  FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             R  PD+ +YTIL+   C  G           RI EA   F  +   G  PD V+YN +I
Sbjct: 967  IR--PDLKSYTILVECLCITG-----------RIDEAVQYFEELKLTGLDPDTVSYNFII 1013

Query: 295  DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            +G  K+ R++ AL LF +M  +G  P+  TYN+ I +  +  ++D A++M  ++Q L   
Sbjct: 1014 NGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQ-LVGL 1072

Query: 355  VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             P+  +Y  +I     +G   +A     +++  G  P   T+
Sbjct: 1073 EPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETF 1114



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 16/232 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D  + M +RG   + + ++    +  L E G ++EA   F  + +    PD   YN+++ 
Sbjct: 466 DTFETMKKRG--IMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMK 523

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
              + G  +KA  LL +M   G  C PDV     LI++  K G           R+  A 
Sbjct: 524 CYSKAGQIDKATQLLSEMISKG--CEPDVMIINSLINTLYKAG-----------RVDAAW 570

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F  +      P VV YN L+ G  K  +I +ALELF  M + GC PN +T+NS +   
Sbjct: 571 KMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCL 630

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           S  + +D A++M  +M  +N   P   +Y  II+ L   GR+  A  F  ++
Sbjct: 631 SKNDAVDLALKMFCRMTMMNCN-PDVLTYNTIIYGLIREGRIDYAFWFFHQM 681



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 129/294 (43%), Gaps = 29/294 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +  +++ +  F  +M   G    V T ++  LI+ L + G V+ A      M      
Sbjct: 350 FGKVGDLETVKRFWNEMEVDGYAPDVVTYTI--LIEALCKSGDVDRAFDMLDVMTTKGIF 407

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------ 255
           P+++ YN +I  L +    ++A  LLE ME  G +  P  ++Y + I  Y K G      
Sbjct: 408 PNLHTYNTMICGLLKARRLDEALELLENMESLGVK--PTAFSYVLFIDYYGKSGDPAKAI 465

Query: 256 --MQTGCRKAI----------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
              +T  ++ I                  RI EA  +F  +   G  PD V YN L+   
Sbjct: 466 DTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCY 525

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
            K  +I++A +L  +M  KGC P+ +  NS I        +D A +M  +++NL    PT
Sbjct: 526 SKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLA-PT 584

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
             +Y  ++  L + G++L+A +    + + G  P   T+  + D L+  +   L
Sbjct: 585 VVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDL 638



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 1/155 (0%)

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A  LF  M   G  P+   YN L+D   K+ RI +  +L+ +M  +GC PN +T+N  I
Sbjct: 814 KALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIII 873

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                 N ++KA+++  ++ + +   PT  +Y P+I  L +AGR  +A     E++D G 
Sbjct: 874 SALVKSNNLNKALDLYYELMSGDFS-PTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGC 932

Query: 390 VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
            P    Y ++ +    + E     +  +K +++GI
Sbjct: 933 GPNSVIYNILINGFGKSGEIDFACELFKKMVKEGI 967



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 104/237 (43%), Gaps = 25/237 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           D   D+ + G    ++  SVT   L+K   + G +++A      M    C PDV   N +
Sbjct: 501 DIFNDLHKCG----LSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSL 556

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           IN L + G  + A  +  +  L   +  P V TY IL++   K G           +I +
Sbjct: 557 INTLYKAGRVDAAWKMFGR--LKNLKLAPTVVTYNILLTGLGKEG-----------KILK 603

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  LF  M   G  P+ + +N L+D   K   ++ AL++F  M    C P+ +TYN+ I 
Sbjct: 604 ALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTII- 662

Query: 331 YYSVVNE--IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            Y ++ E  ID A     +M+      P   +   +I  +   GRV +A   + E V
Sbjct: 663 -YGLIREGRIDYAFWFFHQMKKFLS--PDYVTLCTLIPGVVRHGRVEDAIKVVMEFV 716



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 13/155 (8%)

Query: 171  SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
            S T L++ L   G ++EA+  F  +K     PD  +YN +IN L +    ++A  L  +M
Sbjct: 973  SYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEM 1032

Query: 231  ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            +  G    PD+YTY  LI               I  ++  A  ++  +   G  P V  Y
Sbjct: 1033 KNRGI--SPDLYTYNALI-----------LHLGIAGKVDVAVKMYEELQLVGLEPSVFTY 1079

Query: 291  NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            N LI G   +   ++A  +F  M   GC PN  T+
Sbjct: 1080 NALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETF 1114



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 98/258 (37%), Gaps = 30/258 (11%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           +  LI  L + G V+ A   F R+K  +  P V  YN+++  L + G   KA  L   M 
Sbjct: 553 INSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMT 612

Query: 232 LPGFRCPPDVYTYTILISSYCK-----YGMQTGCRKAIRR-------------------R 267
             G  CPP+  T+  L+    K       ++  CR  +                     R
Sbjct: 613 ESG--CPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGR 670

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-PNRVTYN 326
           I  A   F  M  K   PD V    LI G  +  R+E A+++  +   + C+  N   + 
Sbjct: 671 IDYAFWFFHQMK-KFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWG 729

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             +       EI++AI     +   N          P+I  LC+  + L+A++   +   
Sbjct: 730 ELMECILTEAEIEEAISFAEILV-CNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTK 788

Query: 387 G-GSVPREYTYKLVCDAL 403
             G  P   +Y  + D L
Sbjct: 789 NLGIHPTLESYNCLMDGL 806



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 10/148 (6%)

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID----GCCKTYRIERALELFDDMNKKGC 318
           +I+  I  A    R M   GF+ +  +YN LI     G C       AL+++  M  +G 
Sbjct: 177 SIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLPGFCN-----EALKVYKRMISEGM 231

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            P+  TY++ +       +  K + ++ +M+++    P   +YT  I AL  A R+ +A 
Sbjct: 232 KPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLR-PNIYTYTICIRALGRARRIDDAW 290

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAA 406
               E+ D G  P   TY ++ DAL AA
Sbjct: 291 GIFKEMDDEGCGPDVITYTVLIDALCAA 318



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 169  TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
            T S   +I  LG+   ++EAL+ F  MK     PD+Y YN +I  L   G  + A  + E
Sbjct: 1006 TVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYE 1065

Query: 229  QMELPGFRCPPDVYTYTILISSYCKYG 255
            +++L G    P V+TY  LI  +   G
Sbjct: 1066 ELQLVGLE--PSVFTYNALIRGHSLSG 1090


>gi|356534139|ref|XP_003535615.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g60050-like [Glycine max]
          Length = 480

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 146/347 (42%), Gaps = 41/347 (11%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ W  +   + H       +  ++A     K LW  + +M  +G     T  +   
Sbjct: 139 AYKFFVWCSQQEGYQHTVNAYHLVMNIYAECEEFKALWRLVDEMVEKGLP--ATARTFNI 196

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+  GE GL    +  F + K F  RP  ++YN +++ L  +  +    ++ +Q+ L G
Sbjct: 197 LIRTCGEAGLAKSLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQLLLDG 256

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN--------HLFRLMLF------ 280
           F    D+ TY I++  Y KY  + G      R + E          H F ++L       
Sbjct: 257 F--SSDILTYNIVM--YAKY--RLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHVLGKGD 310

Query: 281 --------------KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
                          G  P V+ +  LIDG  +   ++     FD+M K GCIP+ V Y 
Sbjct: 311 KPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCIPDVVAYT 370

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             I  Y V  EI+KA++M + M +    VP   +Y  II  LC AG+  EA   L E+  
Sbjct: 371 VMITGYVVAGEIEKALKMYQYMISREQ-VPNVFTYNSIIQGLCMAGKFDEACSMLKEMKT 429

Query: 387 GGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG----IEYRFR 429
            G  P  + Y  +   L  A + +   + +R+    G    I  RFR
Sbjct: 430 KGCSPNSFVYNTLASCLRNAGKTADAHEVIRQMTEKGKYADIHSRFR 476


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 125/242 (51%), Gaps = 17/242 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L +EG V EA +    M +   +PDV  Y+ +++    V    KA+ +   M L G
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDV+TYTILI+ +CK  M           + EA +LF+ M  K  VP +V Y+ LI
Sbjct: 335 --VTPDVHTYTILINGFCKNKM-----------VDEALNLFKEMHQKNMVPGIVTYSSLI 381

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+ RI    +L D+M  +G   + +TY+S I        +D+AI +  KM++    
Sbjct: 382 DGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKD-QEI 440

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
            P   ++T ++  LC+ GR+ +A++   +L+  G     YTY ++   +N   +  LL++
Sbjct: 441 RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVM---INGHCKQGLLEE 497

Query: 415 GL 416
            L
Sbjct: 498 AL 499



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 105/222 (47%), Gaps = 17/222 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P+V  Y+ +I+ALC+    ++A  L  +M + G     DV TY+ LI  +C        
Sbjct: 196 KPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGI--SADVVTYSTLIYGFC-------- 245

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
              I  ++ EA  L   M+ K   P+V  YN L+D  CK  +++ A  +   M K    P
Sbjct: 246 ---IEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKP 302

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + +TY++ +  Y +V E+ KA  +   M +L    P   +YT +I+  C+   V EA + 
Sbjct: 303 DVITYSTLMDGYFLVYEVKKAQHVFNAM-SLMGVTPDVHTYTILINGFCKNKMVDEALNL 361

Query: 381 LAELVDGGSVPREYTYKLVCDAL-NAAEEPSLLD--DGLRKR 419
             E+     VP   TY  + D L  +   P + D  D +R R
Sbjct: 362 FKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDR 403



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 15/207 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V    +  K+M ++     + T S   LI  L + G +         M+     
Sbjct: 349 FCKNKMVDEALNLFKEMHQKNMVPGIVTYS--SLIDGLCKSGRIPYVWDLIDEMRDRGQP 406

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            DV  Y+ +I+ LC+ G+ ++A  L  +M+    R  P+++T+TIL+   CK G      
Sbjct: 407 ADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIR--PNIFTFTILLDGLCKGG------ 458

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A  +F+ +L KG+  +V  YN +I+G CK   +E AL +   M   GCIPN
Sbjct: 459 -----RLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPN 513

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKM 348
             T+ + I      +E DKA +++R+M
Sbjct: 514 AFTFETIIIALFKKDENDKAEKLLRQM 540



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 14/216 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    +  +V+EAL  F  M Q    P +  Y+ +I+ LC+ G       L+++M  
Sbjct: 343 TILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRD 402

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G   P DV TY+ LI   CK G            +  A  LF  M  +   P++  +  
Sbjct: 403 RG--QPADVITYSSLIDGLCKNG-----------HLDRAIALFNKMKDQEIRPNIFTFTI 449

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG CK  R++ A E+F D+  KG   N  TYN  I  +     +++A+ M+ KM++ N
Sbjct: 450 LLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMED-N 508

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             +P + ++  II AL +     +A   L +++  G
Sbjct: 509 GCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 18/244 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A++ F RM   R  P +  +N ++++  ++ +++ A  L  ++EL G +  PD+ T 
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQ--PDLITL 97

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI+ +C  G  T     + +           +L +G+ PD V  N LI G C   +++
Sbjct: 98  NILINCFCHMGQITFGFSVLAK-----------ILKRGYPPDTVTLNTLIKGLCLKGQVK 146

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +AL   D +  +G   N+V+Y + I     + +   AI+++RK+       P    Y+ I
Sbjct: 147 KALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDG-RLTKPNVEMYSTI 205

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRI 420
           I ALC+   V EA    +E+   G      TY  +    C      E   LL++ + K I
Sbjct: 206 IDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTI 265

Query: 421 RDGI 424
              +
Sbjct: 266 NPNV 269


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 116/231 (50%), Gaps = 18/231 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L +EG + EA      M +    P V  YN +++  C V    KA+ +L    +  
Sbjct: 269 LVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSI--ISR 326

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R  P+  +Y I+I+ +CK  M           + EA  LF  M  +G  P  V YN LI
Sbjct: 327 MRVAPNSRSYNIMINGFCKIKM-----------VDEALCLFHEMCCRGIAPHKVTYNSLI 375

Query: 295 DGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           DG CK  RI  A EL D+M+   CIP + VTYNS I  +     +DKAI +++K++   H
Sbjct: 376 DGLCKAGRIPYAWELVDEMHNN-CIPADIVTYNSLIDVFCKNQHVDKAIALVKKIK--EH 432

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           G+ P   +Y  +I  LC+ G++  A+D   +L+  G     +TY ++ + L
Sbjct: 433 GIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGL 483



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 105/232 (45%), Gaps = 14/232 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G    AL    +++      +V  Y+ +I+ LC+      A  L  +M +  
Sbjct: 164 LINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVK- 222

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R PP V T++ LI  +C  G           +  +A  LF  M+ K   PD   +N L+
Sbjct: 223 -RIPPTVVTFSSLIYGFCIVG-----------KFKDAFRLFNEMVMKNINPDAYTFNILV 270

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK  +I+ A  +   M K+G  P  VTYN+ +  Y +VNE+ KA  ++  +  +   
Sbjct: 271 DALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRM-RV 329

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            P S SY  +I+  C+   V EA     E+   G  P + TY  + D L  A
Sbjct: 330 APNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKA 381



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 16/208 (7%)

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC-PPDVY 242
           +V+EAL  F+ M      P    YN +I+ LC+ G    A  L+++M      C P D+ 
Sbjct: 348 MVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMH---NNCIPADIV 404

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY  LI  +CK            + + +A  L + +   G  P++  YN LIDG CK  +
Sbjct: 405 TYNSLIDVFCK-----------NQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQ 453

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           ++ A ++F D+  KG   N  TYN  I         D+A  ++ KM++ N  +P + +Y 
Sbjct: 454 LKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMED-NGIIPDAVTYE 512

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSV 390
            II AL       +A+  L E+V  G V
Sbjct: 513 TIIQALFHKDENEKAQKLLREMVIKGVV 540



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 115/267 (43%), Gaps = 53/267 (19%)

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-FNKARFLLEQMELPGFRCPPDVY 242
           +V+ A+ +F RM+Q R  P +  +N ++  L +  N +     L  QME  G +  PD++
Sbjct: 46  VVDNAVLSFNRMRQIRQTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVK--PDLF 103

Query: 243 TYTILISSYCKYGMQTGCRKAIRR----------RIWEANHLFRLMLFKGFVPDVVAYNC 292
           T +ILI+ YC  G  T       +          ++ EA      +L  GF  + V Y  
Sbjct: 104 TLSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGI 163

Query: 293 LIDGCCKTYRIERALE-----------------------------------LFDDMNKKG 317
           LI+G CK  +   AL+                                   L+ +M  K 
Sbjct: 164 LINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKR 223

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRK--MQNLNHGVPTSSSYTPIIHALCEAGRVL 375
             P  VT++S I  + +V +   A  +  +  M+N+N   P + ++  ++ ALC+ G++ 
Sbjct: 224 IPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNIN---PDAYTFNILVDALCKEGKIK 280

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDA 402
           EA++ +A ++  G  P   TY  + D 
Sbjct: 281 EAKNVIAVMMKEGVEPTVVTYNTLMDG 307



 Score = 38.9 bits (89), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +G  +K   D  +D+  +G    V   +   +I  L +EGL +EA     +M+     PD
Sbjct: 450 KGGQLKNAQDVFQDLLIKGYN--VNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPD 507

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPG 234
              Y  +I AL       KA+ LL +M + G
Sbjct: 508 AVTYETIIQALFHKDENEKAQKLLREMVIKG 538


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 125/257 (48%), Gaps = 18/257 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +FAR   +     +L++M  R  G +      T +I      GL+++AL     M    C
Sbjct: 305 LFARRGKMDHAMAYLREM--RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGC 362

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PDV  YN ++N LC+      A  LL +M   G   PPD+ T+T LI  YC        
Sbjct: 363 LPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGV--PPDLCTFTTLIHGYC-------- 412

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
              I  ++ +A  LF  ML +   PD+V YN LIDG C+   +++A +L+DDM+ +   P
Sbjct: 413 ---IEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP 469

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
           N VTY+  I  +    +++ A   + +M  +N G+ P   +Y  II   C +G V + + 
Sbjct: 470 NHVTYSILIDSHCEKGQVEDAFGFLDEM--INKGILPNIMTYNSIIKGYCRSGNVSKGQK 527

Query: 380 FLAELVDGGSVPREYTY 396
           FL +++     P   TY
Sbjct: 528 FLQKMMVNKVSPDLITY 544



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 132/288 (45%), Gaps = 28/288 (9%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  ++ A G         L +M  RG    + T   T LI     EG +++AL  F  
Sbjct: 377 CKERRLLDAEG--------LLNEMRERGVPPDLCT--FTTLIHGYCIEGKLDKALQLFDT 426

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M   R RPD+  YN +I+ +CR G+ +KA  L + M        P+  TY+ILI S+C+ 
Sbjct: 427 MLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH--SREIFPNHVTYSILIDSHCEK 484

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           ++ +A      M+ KG +P+++ YN +I G C++  + +  +    M 
Sbjct: 485 G-----------QVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM 533

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
                P+ +TYN+ I  Y   +++  A +++  M+      P   +Y  +I+     G V
Sbjct: 534 VNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEK-EKVQPDVVTYNMLINGFSVHGNV 592

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCD----ALNAAEEPSLLDDGLRK 418
            EA     ++   G  P  YTY  + +    A N+ E   L D+ L++
Sbjct: 593 QEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 640



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 127/291 (43%), Gaps = 61/291 (20%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           +VT +SV   +K L   G+ ++A   F  M  F   PDV ++ ++I   CRVG   +A  
Sbjct: 226 IVTYNSV---LKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALK 282

Query: 226 LLEQM-------ELPGFRC--------------------------PPDVYTYTILISSYC 252
           + ++M       +L  F C                           PD   YT++I  +C
Sbjct: 283 IYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFC 342

Query: 253 KYGMQT------------GCRKAI------------RRRIWEANHLFRLMLFKGFVPDVV 288
           + G+ +            GC   +             RR+ +A  L   M  +G  PD+ 
Sbjct: 343 RAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLC 402

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            +  LI G C   ++++AL+LFD M  +   P+ VTYN+ I       ++DKA ++   M
Sbjct: 403 TFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDM 462

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +     P   +Y+ +I + CE G+V +A  FL E+++ G +P   TY  +
Sbjct: 463 HS-REIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSI 512



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 17/222 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  +NV+++A  R G+   A  L++ M   G +  P + TY  ++   C+ GM     
Sbjct: 189 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLK--PGIVTYNSVLKGLCRSGMWD--- 243

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                + WE   +F+ M   G  PDV ++  LI G C+   IE AL+++ +M  +G  P+
Sbjct: 244 -----KAWE---VFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPD 295

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            V+++  I  ++   ++D A+  +R+M+     VP    YT +I   C AG + +A    
Sbjct: 296 LVSFSCLIGLFARRGKMDHAMAYLREMRCFGL-VPDGVIYTMVIGGFCRAGLMSDALRVR 354

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLD-DGLRKRIRD 422
            E+V  G +P   TY  + + L   +E  LLD +GL   +R+
Sbjct: 355 DEMVGCGCLPDVVTYNTLLNGL--CKERRLLDAEGLLNEMRE 394



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 114/246 (46%), Gaps = 18/246 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G    A+A    M     +P +  YN V+  LCR G ++KA  + ++M+   F   PDV 
Sbjct: 205 GDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMD--DFGVAPDVR 262

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           ++TILI  +C+ G            I EA  +++ M  +G  PD+V+++CLI    +  +
Sbjct: 263 SFTILIGGFCRVG-----------EIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGK 311

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           ++ A+    +M   G +P+ V Y   I  +     +  A+ +  +M      +P   +Y 
Sbjct: 312 MDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCG-CLPDVVTYN 370

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRK 418
            +++ LC+  R+L+A   L E+ + G  P   T+  +    C      +   L D  L +
Sbjct: 371 TLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ 430

Query: 419 RIRDGI 424
           R+R  I
Sbjct: 431 RLRPDI 436



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 78/200 (39%), Gaps = 31/200 (15%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           +    LWD   DM  R       T S+  LI    E+G V +A      M      P++ 
Sbjct: 453 DKANDLWD---DMHSREIFPNHVTYSI--LIDSHCEKGQVEDAFGFLDEMINKGILPNIM 507

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK--- 262
            YN +I   CR GN +K +  L++M +   +  PD+ TY  LI  Y K        K   
Sbjct: 508 TYNSIIKGYCRSGNVSKGQKFLQKMMVN--KVSPDLITYNTLIHGYIKEDKMHDAFKLLN 565

Query: 263 ---------------------AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
                                ++   + EA  +F  M  KG  PD   Y  +I+G     
Sbjct: 566 MMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG 625

Query: 302 RIERALELFDDMNKKGCIPN 321
             + A +L D+M ++G  P+
Sbjct: 626 NSKEAFQLHDEMLQRGFAPD 645



 Score = 38.9 bits (89), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A   +RL+       +    N ++   CK    ++   +  +M K+   P+ VT+N  + 
Sbjct: 140 AADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVD 199

Query: 331 YYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
                 + + A+ ++  M  + L  G+ T   Y  ++  LC +G   +A +   E+ D G
Sbjct: 200 ARFRAGDAEAAMALVDSMVSKGLKPGIVT---YNSVLKGLCRSGMWDKAWEVFKEMDDFG 256

Query: 389 SVPREYTYKLV 399
             P   ++ ++
Sbjct: 257 VAPDVRSFTIL 267


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 121/255 (47%), Gaps = 30/255 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK L +EGL+ +AL     M +  C  D++ YN+VIN LC++G  + A  L+      G
Sbjct: 397 LIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKG 456

Query: 235 FRCPPDVYTYTILISSYCK-YGMQT-------------------------GCRKAIRRRI 268
           +   PDV+T+  LI  YCK   M+T                         G  KA++   
Sbjct: 457 Y--VPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNE- 513

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +    F  M+ KG VP+ + YN L +  CK  ++  AL+L D++  KG  P+ V++ + 
Sbjct: 514 -DLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATI 572

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           I  ++   ++  A ++ R+M        T+++Y  +I+A  E   +        E+  GG
Sbjct: 573 ISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGG 632

Query: 389 SVPREYTYKLVCDAL 403
             P  YTY+++ D  
Sbjct: 633 CAPDTYTYRVMIDGF 647



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 143/314 (45%), Gaps = 30/314 (9%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           KA E ++ V+R   F H+ +T K +        N   + + L +     +  L+    + 
Sbjct: 22  KALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAETRMDIDNSLLEGVYIG 81

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            + K  G +G V EA+  F RM  + C P V +YN ++N L   G F +A  +  +M+  
Sbjct: 82  AM-KSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNV 140

Query: 234 GFRCPPDVYTYTILISSYCKYG------------MQTGCRK------AIRRRIWEANH-- 273
           G    PDVYT+TI I S+C+              +  GC+        +    +E N+  
Sbjct: 141 GI--VPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRV 198

Query: 274 ----LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
               LF  ML  G  PDV  +N L+   CK   ++ +  L + + KKG   N  T+N FI
Sbjct: 199 EAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFI 258

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +       +  A+ M+  +  +  G+ P   +Y  +I  LC+   V+EA  +L +LV+GG
Sbjct: 259 QGLCRKGMLSGAMSMLDSV--IREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGG 316

Query: 389 SVPREYTYKLVCDA 402
             P  +TY  + D 
Sbjct: 317 LEPDGFTYNTLIDG 330



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 14/228 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            I+ L  +G+++ A++    + +    PDV  YN +I  LC+  N  +A   L ++   G
Sbjct: 257 FIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGG 316

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD +TY  LI  YCK GM     K ++  I            KGFVPD   Y  LI
Sbjct: 317 LE--PDGFTYNTLIDGYCKMGMLQNAEKILQGAIC-----------KGFVPDEFTYCSLI 363

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G C+   I+RAL LF+    KG  P  + YN  I+       I +A++MM +M   N  
Sbjct: 364 NGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSE-NGC 422

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
                +Y  +I+ LC+ G V +A + + + +  G VP  +T+  + D 
Sbjct: 423 SSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDG 470



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 122/272 (44%), Gaps = 22/272 (8%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           ++   DM R G       S+   L+  L ++G V E+     ++ +     +++ +N+ I
Sbjct: 201 YELFNDMLRIG--IFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFI 258

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             LCR G  + A  +L+ +   G    PDV TY  LI   CK              + EA
Sbjct: 259 QGLCRKGMLSGAMSMLDSVIREGL--TPDVVTYNTLICGLCK-----------NSNVVEA 305

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
                 ++  G  PD   YN LIDG CK   ++ A ++      KG +P+  TY S I  
Sbjct: 306 EKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLING 365

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
               +EID+A+ +      L  G+ PT   Y  +I  LC+ G +L+A   + E+ + G  
Sbjct: 366 LCQNDEIDRALALFNAA--LGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCS 423

Query: 391 PREYTYKLVCDAL----NAAEEPSLLDDGLRK 418
              +TY LV + L      ++  +L++D + K
Sbjct: 424 SDIWTYNLVINGLCKMGCVSDANNLMNDAIAK 455



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 109/241 (45%), Gaps = 30/241 (12%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           + + TF  M +  C P+   YN++  +LC+ G  N+A  L++++   G    PD  ++  
Sbjct: 514 DLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGI--TPDTVSFAT 571

Query: 247 LISSYCKYGMQTGCRKAIRR--RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           +IS +   G   G  +  RR    ++ +H                YN +I+   +   + 
Sbjct: 572 IISGFANNGDLKGAYQLFRRMGEQYKVSH------------TTATYNIMINAFAEKLDLH 619

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTP 363
              +LF +M   GC P+  TY   I  + +    D   + + +M  +  G +P+ +++  
Sbjct: 620 MGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEM--IEKGFIPSLTTFGR 677

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE-----PSLLDDGLRK 418
           +I+ LC   RV EA D +  +V  G VP       V ++++ A++     P ++ + L K
Sbjct: 678 VINCLCVQHRVHEAVDIIHFMVHNGIVPE------VVNSISEADKKVVAAPKIVVEDLLK 731

Query: 419 R 419
           R
Sbjct: 732 R 732


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 125/257 (48%), Gaps = 18/257 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +FAR   +     +L++M  R  G +      T +I      GL+++AL     M    C
Sbjct: 244 LFARRGKMDHAMAYLREM--RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGC 301

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PDV  YN ++N LC+      A  LL +M   G   PPD+ T+T LI  YC        
Sbjct: 302 LPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGV--PPDLCTFTTLIHGYC-------- 351

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
              I  ++ +A  LF  ML +   PD+V YN LIDG C+   +++A +L+DDM+ +   P
Sbjct: 352 ---IEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFP 408

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
           N VTY+  I  +    +++ A   + +M  +N G+ P   +Y  II   C +G V + + 
Sbjct: 409 NHVTYSILIDSHCEKGQVEDAFGFLDEM--INKGILPNIMTYNSIIKGYCRSGNVSKGQK 466

Query: 380 FLAELVDGGSVPREYTY 396
           FL +++     P   TY
Sbjct: 467 FLQKMMVNKVSPDLITY 483



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 127/291 (43%), Gaps = 61/291 (20%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           +VT +SV   +K L   G+ ++A   F  M  F   PDV ++ ++I   CRVG   +A  
Sbjct: 165 IVTYNSV---LKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALK 221

Query: 226 LLEQM-------ELPGFRC--------------------------PPDVYTYTILISSYC 252
           + ++M       +L  F C                           PD   YT++I  +C
Sbjct: 222 IYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFC 281

Query: 253 KYGMQT------------GCRKAI------------RRRIWEANHLFRLMLFKGFVPDVV 288
           + G+ +            GC   +             RR+ +A  L   M  +G  PD+ 
Sbjct: 282 RAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLC 341

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            +  LI G C   ++++AL+LFD M  +   P+ VTYN+ I       ++DKA ++   M
Sbjct: 342 TFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDM 401

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +     P   +Y+ +I + CE G+V +A  FL E+++ G +P   TY  +
Sbjct: 402 HS-REIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSI 451



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 132/288 (45%), Gaps = 28/288 (9%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  ++ A G         L +M  RG    + T   T LI     EG +++AL  F  
Sbjct: 316 CKERRLLDAEG--------LLNEMRERGVPPDLCT--FTTLIHGYCIEGKLDKALQLFDT 365

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M   R RPD+  YN +I+ +CR G+ +KA  L + M        P+  TY+ILI S+C+ 
Sbjct: 366 MLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH--SREIFPNHVTYSILIDSHCEK 423

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           ++ +A      M+ KG +P+++ YN +I G C++  + +  +    M 
Sbjct: 424 G-----------QVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM 472

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
                P+ +TYN+ I  Y   +++  A +++  M+      P   +Y  +I+     G V
Sbjct: 473 VNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEK-EKVQPDVVTYNMLINGFSVHGNV 531

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCD----ALNAAEEPSLLDDGLRK 418
            EA     ++   G  P  YTY  + +    A N+ E   L D+ L++
Sbjct: 532 QEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 579



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 17/222 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  +NV+++A  R G+   A  L++ M   G +  P + TY  ++   C+ GM     
Sbjct: 128 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLK--PGIVTYNSVLKGLCRSGMWD--- 182

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                + WE   +F+ M   G  PDV ++  LI G C+   IE AL+++ +M  +G  P+
Sbjct: 183 -----KAWE---VFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPD 234

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            V+++  I  ++   ++D A+  +R+M+     VP    YT +I   C AG + +A    
Sbjct: 235 LVSFSCLIGLFARRGKMDHAMAYLREMRCFGL-VPDGVIYTMVIGGFCRAGLMSDALRVR 293

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLD-DGLRKRIRD 422
            E+V  G +P   TY  + + L   +E  LLD +GL   +R+
Sbjct: 294 DEMVGCGCLPDVVTYNTLLNGL--CKERRLLDAEGLLNEMRE 333



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 114/246 (46%), Gaps = 18/246 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G    A+A    M     +P +  YN V+  LCR G ++KA  + ++M+   F   PDV 
Sbjct: 144 GDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMD--DFGVAPDVR 201

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           ++TILI  +C+ G            I EA  +++ M  +G  PD+V+++CLI    +  +
Sbjct: 202 SFTILIGGFCRVG-----------EIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGK 250

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           ++ A+    +M   G +P+ V Y   I  +     +  A+ +  +M      +P   +Y 
Sbjct: 251 MDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCG-CLPDVVTYN 309

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRK 418
            +++ LC+  R+L+A   L E+ + G  P   T+  +    C      +   L D  L +
Sbjct: 310 TLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ 369

Query: 419 RIRDGI 424
           R+R  I
Sbjct: 370 RLRPDI 375



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 75/191 (39%), Gaps = 31/191 (16%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           LWD   DM  R       T S+  LI    E+G V +A      M      P++  YN +
Sbjct: 397 LWD---DMHSREIFPNHVTYSI--LIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSI 451

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK-------- 262
           I   CR GN +K +  L++M +   +  PD+ TY  LI  Y K        K        
Sbjct: 452 IKGYCRSGNVSKGQKFLQKMMVN--KVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKE 509

Query: 263 ----------------AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
                           ++   + EA  +F  M  KG  PD   Y  +I+G       + A
Sbjct: 510 KVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEA 569

Query: 307 LELFDDMNKKG 317
            +L D+M ++G
Sbjct: 570 FQLHDEMLQRG 580



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A   +RL+       +    N ++   CK    ++   +  +M K+   P+ VT+N  + 
Sbjct: 79  AADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVD 138

Query: 331 YYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
                 + + A+ ++  M  + L  G+ T   Y  ++  LC +G   +A +   E+ D G
Sbjct: 139 ARFRAGDAEAAMALVDSMVSKGLKPGIVT---YNSVLKGLCRSGMWDKAWEVFKEMDDFG 195

Query: 389 SVPREYTYKLV 399
             P   ++ ++
Sbjct: 196 VAPDVRSFTIL 206


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 133/315 (42%), Gaps = 54/315 (17%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL--- 227
           + T  I+VLG  G ++EA   F RM    C PD+  Y V+I+ALC  G    A+ L    
Sbjct: 264 TFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKM 323

Query: 228 --------------------------------EQMELPGFRCPPDVYTYTILISSYCKYG 255
                                            QME  G+   PDV T+TIL+   CK  
Sbjct: 324 KANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYM--PDVVTFTILVDVLCK-- 379

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                     R   EA   F +M  +G +P++  YN LI G  +  RIE AL+L D M  
Sbjct: 380 ---------ARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMES 430

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
            G  P   TY +FI Y+    E  KA+E   KM+     VP   +    +++L E GR+ 
Sbjct: 431 VGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKA-KGIVPNIVACNASLYSLAEMGRLR 489

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVK 435
           EA+     L + G  P   TY ++    +   +     + L + IR+G E     V+ V 
Sbjct: 490 EAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCE---PDVIVVN 546

Query: 436 PIMKHKELLKCGEID 450
            ++    L K G +D
Sbjct: 547 SLI--DSLYKAGRVD 559



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 118/256 (46%), Gaps = 19/256 (7%)

Query: 168  TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
            T +S  CLI  L E     +A   F  MK   C PD + +N+++    + G   +   L 
Sbjct: 787  TLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELY 846

Query: 228  EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            ++M     RC PD  TY I+ISS  K              + +A   F  ++   F P  
Sbjct: 847  KEM--ISRRCKPDAITYNIVISSLAK-----------SNNLDKALDFFYDLVSSDFRPTP 893

Query: 288  VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
              Y  LIDG  K  R+E A+ LF++M+  GC PN   +N  I  Y  + + + A ++ ++
Sbjct: 894  RTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKR 953

Query: 348  MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            M  +N G+ P   SYT ++  LC AGRV EA  +  EL   G  P    Y  + + L  +
Sbjct: 954  M--VNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKS 1011

Query: 407  ---EEPSLLDDGLRKR 419
               EE   L + +R R
Sbjct: 1012 QRMEEALALYNEMRNR 1027



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 137/301 (45%), Gaps = 29/301 (9%)

Query: 120  HWVERFFDFFHN---------EMTCKEMGIVFARGNNVKGLWDFLKDM-SRRGNGELVTT 169
            H+ E+ +D F +           T   +  V  +   +  L++  K+M SRR   + +T 
Sbjct: 802  HYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITY 861

Query: 170  SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
            + V   I  L +   +++AL  FY +     RP    Y  +I+ L +VG   +A  L E+
Sbjct: 862  NIV---ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEE 918

Query: 230  MELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M    + C P+   + ILI+ Y K G  +T C+            LF+ M+ +G  PD+ 
Sbjct: 919  MS--DYGCKPNCAIFNILINGYGKIGDTETACQ------------LFKRMVNEGIRPDLK 964

Query: 289  AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            +Y  L+D  C   R++ AL  F+++   G  P+ + YN  I        +++A+ +  +M
Sbjct: 965  SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM 1024

Query: 349  QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            +N    VP   +Y  ++  L  AG V +A+    EL   G  P  +TY  +    + +E 
Sbjct: 1025 RNRGI-VPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSEN 1083

Query: 409  P 409
            P
Sbjct: 1084 P 1084



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 120/262 (45%), Gaps = 19/262 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F   +  K  W  ++      +G +    + T L+ VL +    +EA ATF  M++    
Sbjct: 345 FGDLDTFKEFWSQME-----ADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGIL 399

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+++ YN +I  L R G    A  LL+ ME  G +  P  YTY   I  + K G +TG  
Sbjct: 400 PNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQ--PTAYTYITFIDYFGKSG-ETG-- 454

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                   +A   F  M  KG VP++VA N  +    +  R+  A  +F+ + + G  P+
Sbjct: 455 --------KAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPD 506

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VTYN  ++ YS V ++D+A+ ++ +M   N   P       +I +L +AGRV EA    
Sbjct: 507 SVTYNMMMKCYSKVGQVDEAVNLLSEMIR-NGCEPDVIVVNSLIDSLYKAGRVDEAWQMF 565

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
             + D    P   TY  +   L
Sbjct: 566 DRMKDMKLSPTVVTYNTLLSGL 587



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 122/258 (47%), Gaps = 19/258 (7%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G ++   S   LI +L + G   EAL  + RM     +P +  Y+ ++ AL +  + 
Sbjct: 184 RKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDS 243

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
                LL++ME  G R  P+VYT+TI I    + G           +I EA  +FR M  
Sbjct: 244 EMVMVLLKEMEDLGLR--PNVYTFTICIRVLGRAG-----------KIDEAYEIFRRMDD 290

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G  PD+V Y  LID  C   ++E A ELF  M   G  P++V Y + +  ++   ++D 
Sbjct: 291 EGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDT 350

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK-LV 399
             E   +M+   + +P   ++T ++  LC+A    EA      +   G +P  +TY  L+
Sbjct: 351 FKEFWSQMEADGY-MPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLI 409

Query: 400 CDALNAAEEPSLLDDGLR 417
           C  L A      ++D L+
Sbjct: 410 CGLLRAGR----IEDALK 423



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 14/206 (6%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L E G + EA   F  +++    PD   YN+++    +VG  ++A  LL +M   G  C 
Sbjct: 482 LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG--CE 539

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PDV     LI S  K G           R+ EA  +F  M      P VV YN L+ G  
Sbjct: 540 PDVIVVNSLIDSLYKAG-----------RVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLG 588

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K  R+++A+ELF+ M  K C PN +++N+ +  +   +E++ A++M  KM  ++   P  
Sbjct: 589 KEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCK-PDV 647

Query: 359 SSYTPIIHALCEAGRVLEARDFLAEL 384
            +Y  +I+ L +  +V  A  F  +L
Sbjct: 648 LTYNTVIYGLIKENKVNHAFWFFHQL 673



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 19/228 (8%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R NG    + +   ++K   + G V+EA+     M +  C PDV   N +I++L + G  
Sbjct: 499 RENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRV 558

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           ++A  + ++M+    +  P V TY  L+S   K G           R+ +A  LF  M+ 
Sbjct: 559 DEAWQMFDRMK--DMKLSPTVVTYNTLLSGLGKEG-----------RVQKAIELFESMIX 605

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           K   P+ +++N L+D  CK   +E AL++F  M    C P+ +TYN+ I      N+++ 
Sbjct: 606 KKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNH 665

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE----ARDFLAEL 384
           A     +++   H  P   +   ++  L + G++ +    ARDF+ ++
Sbjct: 666 AFWFFHQLKKSMH--PDHVTICTLLPGLVKCGQIGDAISIARDFMYQV 711



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 32/233 (13%)

Query: 142  FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             A+ NN+    DF  D+         T  +   LI  L + G + EA+  F  M  + C+
Sbjct: 868  LAKSNNLDKALDFFYDLVSSDFRP--TPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCK 925

Query: 202  PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------ 255
            P+   +N++IN   ++G+   A  L ++M   G R  PD+ +YTIL+   C  G      
Sbjct: 926  PNCAIFNILINGYGKIGDTETACQLFKRMVNEGIR--PDLKSYTILVDCLCLAGRVDEAL 983

Query: 256  --------------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
                                +  G  K+  +R+ EA  L+  M  +G VPD+  YN L+ 
Sbjct: 984  YYFNELKSTGLDPDFIAYNRIINGLGKS--QRMEEALALYNEMRNRGIVPDLYTYNSLML 1041

Query: 296  GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
                   +E+A  +++++   G  P+  TYN+ IR YS+    + A  + + M
Sbjct: 1042 NLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNM 1094



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 14/239 (5%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L TT +   +++ L     V +  A F  M++   R D+  Y  +  AL   G   +   
Sbjct: 119 LHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTT 178

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           +L +M   GF    + Y+Y  LI    + G    C +A+         ++R M+ +G  P
Sbjct: 179 VLNKMRKAGFVL--NAYSYNGLIHLLIQSGF---CGEAL--------EVYRRMVSEGLKP 225

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
            +  Y+ L+    K    E  + L  +M   G  PN  T+   IR      +ID+A E+ 
Sbjct: 226 SLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIF 285

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           R+M +   G P   +YT +I ALC AG++  A++   ++   G  P +  Y  + D  N
Sbjct: 286 RRMDDEGCG-PDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFN 343



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 107/297 (36%), Gaps = 67/297 (22%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T S   L+    +   V  AL  F +M    C+PDV  YN VI  L +    N A +   
Sbjct: 612 TISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFH 671

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTG------------CRKAIRRRIWE------ 270
           Q++       PD  T   L+    K G Q G             R  + R  WE      
Sbjct: 672 QLKKS---MHPDHVTICTLLPGLVKCG-QIGDAISIARDFMYQVRFRVNRSFWEDLMGGT 727

Query: 271 --------------------------------------ANHLFRLMLFK------GFVPD 286
                                                    L+   +F       G  P 
Sbjct: 728 LVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPT 787

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           + +YNCLI    + +  E+A +LF DM   GC P+  T+N  +  +    +I +  E+ +
Sbjct: 788 LASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYK 847

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +M +     P + +Y  +I +L ++  + +A DF  +LV     P   TY  + D L
Sbjct: 848 EMIS-RRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGL 903



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 13/155 (8%)

Query: 171  SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
            S T L+  L   G V+EAL  F  +K     PD  AYN +IN L +     +A  L  +M
Sbjct: 965  SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM 1024

Query: 231  ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
               G    PD+YTY  L+ +    GM           + +A  ++  +   G  PDV  Y
Sbjct: 1025 RNRGI--VPDLYTYNSLMLNLGLAGM-----------VEQAKRMYEELQLAGLEPDVFTY 1071

Query: 291  NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            N LI G   +   E A  ++ +M   GC PN  TY
Sbjct: 1072 NALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTY 1106



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 204 VYAYNVVINALCRVGNF--NKARFLLE-QMELPGFRCPPDVYTYTILIS-SYCKYGMQTG 259
           ++A  +V+N +CR  +F     R L + + EL  ++   D +T  + IS +   Y    G
Sbjct: 738 IFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIF-DKFTKKLGISPTLASYNCLIG 796

Query: 260 CRKAIR--RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
               +    + W+   LF+ M   G  PD   +N L+    K+ +I    EL+ +M  + 
Sbjct: 797 ELLEVHYTEKAWD---LFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRR 853

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
           C P+ +TYN  I   +  N +DKA++    + + +   PT  +Y P+I  L + GR+ EA
Sbjct: 854 CKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR-PTPRTYGPLIDGLAKVGRLEEA 912

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
                E+ D G  P    + ++ +      +        ++ + +GI
Sbjct: 913 MRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGI 959


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 14/249 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+   G+ G   +AL  FY M++  C PD   YNV+I+ L + G  ++A  LLE M   G
Sbjct: 341 LMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKG 400

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD  TY I+I      G           R  +A   F +M  +   PDVV YN L+
Sbjct: 401 IM--PDCRTYNIVIDVLSSCG-----------RYEKAYSFFGMMKRRKHSPDVVTYNTLL 447

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G  K  R + A +LFD+M    C+P+  T+ + I   +    ++ A+E   ++  + H 
Sbjct: 448 NGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHA 507

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
            P S  Y  +I   C +G+V +  +   ++++    P   TY ++    +     S+  +
Sbjct: 508 -PNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAME 566

Query: 415 GLRKRIRDG 423
            L++ +R+G
Sbjct: 567 LLQEMVREG 575



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 124/256 (48%), Gaps = 16/256 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +   V    + L+DM+R+G      T ++  +I VL   G   +A + F  MK+ +  
Sbjct: 380 LGKQGKVDEALELLEDMNRKGIMPDCRTYNI--VIDVLSSCGRYEKAYSFFGMMKRRKHS 437

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  YN ++N L ++   ++A  L ++M+    +C PD+ T+  LI +  K G      
Sbjct: 438 PDVVTYNTLLNGLKKLRRTDEACDLFDEMQ--ANKCMPDLTTFGTLIDTLAKAG------ 489

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A      ++  G  P+   YN LI G C++ ++++  ELF DM +  C P+
Sbjct: 490 -----RMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPD 544

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            +TY   +  +S       A+E++++M    H  P  ++Y  +I +L  AG+V +A    
Sbjct: 545 SITYTILVLGFSRRGHTSMAMELLQEMVREGH-TPALATYNVLIRSLSMAGQVEDAYTLF 603

Query: 382 AELVDGGSVPREYTYK 397
            E++  G  P   TY 
Sbjct: 604 KEMIAKGFNPDMQTYS 619



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 118/259 (45%), Gaps = 28/259 (10%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L+  L +     +ALA F  M     + DV   N +I+  CR+G   +AR LL  M
Sbjct: 163 SFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHM 222

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM------------QTGCRKA-----------IR-R 266
                 C  D +TY IL++++C+ G               GC  +           IR  
Sbjct: 223 --TAHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCG 280

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           R+ EA  LF   + K  VPDV  YN LI   CK+ ++E AL LF +  + G + +  TY+
Sbjct: 281 RLAEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYS 339

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             +  +       KA+E+   MQ     +P +  Y  +I  L + G+V EA + L ++  
Sbjct: 340 YLMDAFGKAGRAAKALEVFYNMQKAG-CMPDTVVYNVLISCLGKQGKVDEALELLEDMNR 398

Query: 387 GGSVPREYTYKLVCDALNA 405
            G +P   TY +V D L++
Sbjct: 399 KGIMPDCRTYNIVIDVLSS 417



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 109/239 (45%), Gaps = 18/239 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + EA   F         PDV+ YN++I ALC+     +A  L ++ E  G     DV+
Sbjct: 280 GRLAEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGV--VLDVF 336

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY+ L+ ++ K G           R  +A  +F  M   G +PD V YN LI    K  +
Sbjct: 337 TYSYLMDAFGKAG-----------RAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGK 385

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           ++ ALEL +DMN+KG +P+  TYN  I   S     +KA      M+   H  P   +Y 
Sbjct: 386 VDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHS-PDVVTYN 444

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
            +++ L +  R  EA D   E+     +P   T+  + D L  A     ++D L +  R
Sbjct: 445 TLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGR---MEDALEQSAR 500



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 115/270 (42%), Gaps = 15/270 (5%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           +E+TC E    F R  ++      L DM RRGN     T + T  +  L E   V +A+ 
Sbjct: 52  SEVTCTECIQAFGRAGDLDAAMGMLDDM-RRGNFCQPDTVAFTAAMHWLCEVRRVEQAMT 110

Query: 191 TFYRMKQF-RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
            F  M++   C PDV AYN +I   C+ G+ ++A  +  +++  G  C P+  ++  L+ 
Sbjct: 111 LFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEG-SCKPNAVSFDTLVI 169

Query: 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
             CK             R  +A  +F+ ML  G   DV   N LI   C+   + +A  L
Sbjct: 170 FLCKMS-----------RATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRL 218

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
              M    C  +  TY   +  +    ++ +    M ++   +    ++ +Y  II    
Sbjct: 219 LHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFM-ELARHDGCALSAVNYNFIIQGFI 277

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             GR+ EA       +   SVP  +TY L+
Sbjct: 278 RCGRLAEATQLFESTMTKESVPDVFTYNLL 307



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G + +AL    R+ +    P+ Y YN +I+  CR G  +K   L + M    
Sbjct: 481 LIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDM--IE 538

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD  TYTIL+  + + G  +            A  L + M+ +G  P +  YN LI
Sbjct: 539 CSCFPDSITYTILVLGFSRRGHTS-----------MAMELLQEMVREGHTPALATYNVLI 587

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
                  ++E A  LF +M  KG  P+  TY++ 
Sbjct: 588 RSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 621



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 26/177 (14%)

Query: 238 PPDVYTYTILISSYCKYGMQ----------------------TGCRKAIRRR--IWEANH 273
           P D +T T ++   CK G                        T C +A  R   +  A  
Sbjct: 15  PVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFGRAGDLDAAMG 74

Query: 274 LFRLMLFKGFV-PDVVAYNCLIDGCCKTYRIERALELFDDMNKK-GCIPNRVTYNSFIRY 331
           +   M    F  PD VA+   +   C+  R+E+A+ LFDDM +   C P+ V YN+ I  
Sbjct: 75  MLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTLIAG 134

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           Y    + D+A++M R+++      P + S+  ++  LC+  R  +A     E++  G
Sbjct: 135 YCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAG 191



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 49/103 (47%)

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           ++ +L  G   D      ++   CK  R E   EL  ++ +KG   + VT    I+ +  
Sbjct: 6   YKHLLKAGLPVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFGR 65

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             ++D A+ M+  M+  N   P + ++T  +H LCE  RV +A
Sbjct: 66  AGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQA 108


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 14/231 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+  L +EG+V  A      M Q    PDV  Y  +++  C     ++A  + + M  
Sbjct: 288 TTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVR 347

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C P+V +Y+ LI+ YCK            +RI +A +LF  M  +  VP++V YN 
Sbjct: 348 KG--CAPNVISYSTLINGYCKI-----------QRIDKAMYLFEEMCQRELVPNIVTYNT 394

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI G C   R+  A+ LF +M   G IP+ VTY   + Y      +D+A+ M++ ++  N
Sbjct: 395 LIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSN 454

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              P   SY  +I  +C  G +  A D  + L   G  P  +TY ++ + L
Sbjct: 455 LA-PDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGL 504



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 127/292 (43%), Gaps = 58/292 (19%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T++ T LI+ L  EG + EAL  F +M     +P+   Y  +I+ LC+VGN   A  LL 
Sbjct: 144 TATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLR 203

Query: 229 QM---------------------------------ELPGFRCPPDVYTYTILISSYCKYG 255
            M                                 E+      P+V TY  +I   CK+ 
Sbjct: 204 SMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFS 263

Query: 256 ----MQTGCRKAIRRRIWE--------------------ANHLFRLMLFKGFVPDVVAYN 291
               + T   + +  +I                      A+ +  +M+ +G  PDVV Y 
Sbjct: 264 EWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYT 323

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L+DG C    ++ A ++FD M +KGC PN ++Y++ I  Y  +  IDKA+ +  +M   
Sbjct: 324 ALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQ- 382

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              VP   +Y  +IH LC  GR+ +A     E+V  G +P   TY+++ D L
Sbjct: 383 RELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYL 434



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 123/266 (46%), Gaps = 29/266 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EAL++F RM   +  P V  +  ++ ++  + +++    L +QM+  G   P DVYT 
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGI--PSDVYTL 112

Query: 245 TILISSYC----------------KYGMQTGCRK--------AIRRRIWEANHLFRLMLF 280
            I+I+S+C                K G Q              +  +I EA HLF  M+ 
Sbjct: 113 AIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVG 172

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +GF P+ V Y  LI G CK      A+ L   M +K C PN +TYN+ I       ++++
Sbjct: 173 EGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNE 232

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A+ +  +M  +  G+ P  S+Y  IIH LC+          + E+VD   +P    +  +
Sbjct: 233 ALNIFSEM--IAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTL 290

Query: 400 CDALNAAEEPSLLDDGLRKRIRDGIE 425
            DAL      ++  D +   I+ G+E
Sbjct: 291 VDALCKEGMVTIAHDVVDVMIQRGVE 316



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 16/212 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L   G + +A+A F+ M      PD+  Y ++++ LC+  + ++A  +L+ +E  G
Sbjct: 395 LIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIE--G 452

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD+ +Y I+I   C+ G            +  A  LF  +  KG  PDV  Y  +I
Sbjct: 453 SNLAPDIQSYNIVIDGMCRVG-----------ELEAAGDLFSSLSSKGLHPDVWTYTIMI 501

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G C    +  A +LF +MN  GC P+  TYN   R +   NE   AI+++++M  L  G
Sbjct: 502 NGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEM--LGRG 559

Query: 355 VPT-SSSYTPIIHALCEAGRVLEARDFLAELV 385
               +S+ T I+  L + G     +  L E V
Sbjct: 560 FSADASTITLIVEMLSDDGLDQSVKQILHEFV 591



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 104/237 (43%), Gaps = 17/237 (7%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
             LA  +++     +PD   +  +I  LC  G   +A  L ++M   GF+  P+  TY  
Sbjct: 130 SVLAKIFKLGH---QPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQ--PNGVTYGT 184

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI   CK G     R AIR        L R M+ K   P+V+ YN +ID   K  ++  A
Sbjct: 185 LIHGLCKVG---NSRAAIR--------LLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEA 233

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
           L +F +M  KG  PN  TYNS I      +E      +M +M + +  +P    +T ++ 
Sbjct: 234 LNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVD-SKIMPNVVIFTTLVD 292

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           ALC+ G V  A D +  ++  G  P   TY  + D      E    D      +R G
Sbjct: 293 ALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKG 349


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 136/298 (45%), Gaps = 43/298 (14%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           RG  +  L  F  DM  RG    V T S+  L+    +E    +A+     M+   C PD
Sbjct: 173 RGCVLDALAVF-DDMLHRGCSPSVVTYSI--LLDATCKESGYKQAVVLLDEMRSKGCEPD 229

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-------- 255
           +  YNV+INA+C  G+  +A  +L    LP + C PD  TYT ++ S C           
Sbjct: 230 IVTYNVLINAMCSQGDVGEALKVLNS--LPSYGCKPDAVTYTPVLKSLCSSERWEEADKL 287

Query: 256 -------------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                              + + C+K    R   A  +   M   G  PD++ Y+ ++DG
Sbjct: 288 LTKMFSNDCAPDEVTFNAVITSLCQKGFVGR---ATKVLAQMSEHGCTPDIITYSSIMDG 344

Query: 297 CCKTYRIERAL----ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
            CK  R++ A+    EL  +M  K CIP++VT+N+ I         D+AI+++ +M    
Sbjct: 345 LCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSE-- 402

Query: 353 HG-VPTSSSYTPIIHA-LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           HG +P  ++Y  I+   LC++ +  EA D L  +V  G  P   TYK +   L+  +E
Sbjct: 403 HGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDE 460



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 15/232 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM--EL 232
           +I  L ++G V  A     +M +  C PD+  Y+ +++ LC+    ++A  LL+++  E+
Sbjct: 306 VITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEM 365

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
               C PD  T+  +I+S C+ G+     +AI+     + H        G +PD+  YNC
Sbjct: 366 VSKNCIPDQVTFNTIITSLCQKGLFD---RAIKVVDEMSEH--------GCIPDITTYNC 414

Query: 293 LIDG-CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
           ++DG  CK+ + E AL+L + M   G  P+  TY S     S  +E+++AI M R++Q +
Sbjct: 415 IVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAM 474

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
               P    Y  I+  LC+  R   A DF A +V  G +P E TY ++ + +
Sbjct: 475 GLS-PDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGI 525



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 117/246 (47%), Gaps = 22/246 (8%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           S  G+G+         LIK L  +G V +A      +        +  YN ++N  CR G
Sbjct: 86  SISGSGKDPAVIPCNILIKKLCADGRVADAERVVEALGP---SATIITYNTMVNGYCRAG 142

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
           N + AR +++ +        PD +TY  LI + C           +R  + +A  +F  M
Sbjct: 143 NIDAARRMIDSVPFA-----PDTFTYNPLIRALC-----------VRGCVLDALAVFDDM 186

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           L +G  P VV Y+ L+D  CK    ++A+ L D+M  KGC P+ VTYN  I       ++
Sbjct: 187 LHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDV 246

Query: 339 DKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            +A++++  +   ++G  P + +YTP++ +LC + R  EA   L ++      P E T+ 
Sbjct: 247 GEALKVLNSLP--SYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFN 304

Query: 398 LVCDAL 403
            V  +L
Sbjct: 305 AVITSL 310



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 14/202 (6%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD + YN +I ALC  G    A  + + M   G  C P V TY+IL+ + CK   ++G +
Sbjct: 158 PDTFTYNPLIRALCVRGCVLDALAVFDDMLHRG--CSPSVVTYSILLDATCK---ESGYK 212

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
           +A+         L   M  KG  PD+V YN LI+  C    +  AL++ + +   GC P+
Sbjct: 213 QAVV--------LLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPD 264

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VTY   ++        ++A +++ KM + N   P   ++  +I +LC+ G V  A   L
Sbjct: 265 AVTYTPVLKSLCSSERWEEADKLLTKMFS-NDCAPDEVTFNAVITSLCQKGFVGRATKVL 323

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
           A++ + G  P   TY  + D L
Sbjct: 324 AQMSEHGCTPDIITYSSIMDGL 345



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 35/225 (15%)

Query: 155 LKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEAL----ATFYRMKQFRCRPDVYAYNV 209
           L  MS  G   +++T SS+   +  L +E  V+EA+         M    C PD   +N 
Sbjct: 323 LAQMSEHGCTPDIITYSSI---MDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNT 379

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY-CKY-------------- 254
           +I +LC+ G F++A  ++++M   G  C PD+ TY  ++  + CK               
Sbjct: 380 IITSLCQKGLFDRAIKVVDEMSEHG--CIPDITTYNCIVDGFLCKSCKTEEALDLLNLMV 437

Query: 255 --GM--QTGCRKAI------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             G+   T   K++         +  A  +FR +   G  PD + YN ++ G CK +R +
Sbjct: 438 SNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTD 497

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
            A++ F  M   GC+P+  TY   +   +    +++A E++  + 
Sbjct: 498 LAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKELLGNLS 542


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 124/253 (49%), Gaps = 18/253 (7%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +D   +M  RG    V T S   LI      G + EA      M      P+VY Y +++
Sbjct: 170 YDLYSEMDARGIFPNVITYST--LIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILM 227

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           +ALC+ G   +A+ LL  M   G +  P+V +Y  L+  YC  G            +  A
Sbjct: 228 DALCKEGKVKEAKNLLAVMTKEGVK--PNVVSYNTLMDGYCLIG-----------EVQNA 274

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +F  M+ KG  P+V +YN +ID  CK+ R++ A+ L  ++  K  +PN VTY+S I  
Sbjct: 275 KQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDG 334

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
           +  +  I  A++++++M   + G P    +YT ++ ALC+   + +A     ++ + G  
Sbjct: 335 FCKLGRITSALDLLKEM--YHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQ 392

Query: 391 PREYTYKLVCDAL 403
           P +YTY  + D L
Sbjct: 393 PNKYTYTALIDGL 405



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 19/247 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L+  L +EG V EA      M +   +P+V +YN +++  C +G    A+ +   M
Sbjct: 222 TYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTM 281

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P+VY+Y I+I   CK            +R+ EA +L R +L K  VP+ V Y
Sbjct: 282 VQKGVN--PNVYSYNIMIDRLCK-----------SKRVDEAMNLLREVLHKNMVPNTVTY 328

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + LIDG CK  RI  AL+L  +M  +G   + VTY S +        +DKA  +  KM+ 
Sbjct: 329 SSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKE 388

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
              G+ P   +YT +I  LC+ GR   A+     L+  G     +TY ++   L    + 
Sbjct: 389 --RGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLC---KE 443

Query: 410 SLLDDGL 416
            +LD+ L
Sbjct: 444 GMLDEAL 450



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 119/266 (44%), Gaps = 45/266 (16%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L+  L + G    AL     ++    RP+V  YN +I+ LC+    N+A  L  +M
Sbjct: 117 SYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM 176

Query: 231 ELPGF---------------------------------RCPPDVYTYTILISSYCKYGMQ 257
           +  G                                     P+VYTYTIL+ + CK G  
Sbjct: 177 DARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEG-- 234

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    ++ EA +L  +M  +G  P+VV+YN L+DG C    ++ A ++F  M +KG
Sbjct: 235 ---------KVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKG 285

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             PN  +YN  I        +D+A+ ++R++ + N  VP + +Y+ +I   C+ GR+  A
Sbjct: 286 VNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNM-VPNTVTYSSLIDGFCKLGRITSA 344

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
            D L E+   G      TY  + DAL
Sbjct: 345 LDLLKEMYHRGQPADVVTYTSLLDAL 370



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 115/234 (49%), Gaps = 18/234 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           ++  LI      G +  +     ++ +   +P+    N ++  LC  G   K+    +++
Sbjct: 47  TLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKV 106

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              GF+   D  +Y  L++  CK G     R A++        L R++  +   P+VV Y
Sbjct: 107 VAQGFQM--DQVSYATLLNGLCKIG---ETRSALK--------LLRMIEDRSTRPNVVMY 153

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-- 348
           N +IDG CK   +  A +L+ +M+ +G  PN +TY++ I  + +  ++ +A  ++ +M  
Sbjct: 154 NTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMIL 213

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +N+N   P   +YT ++ ALC+ G+V EA++ LA +   G  P   +Y  + D 
Sbjct: 214 KNIN---PNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDG 264



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 105/236 (44%), Gaps = 33/236 (13%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CLI      G V  A   F+ M Q    P+VY+YN++I+ LC+    ++A  LL   E+ 
Sbjct: 266 CLI------GEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLR--EVL 317

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIR------------------------RRIW 269
                P+  TY+ LI  +CK G  T     ++                        + + 
Sbjct: 318 HKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLD 377

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A  LF  M  +G  P+   Y  LIDG CK  R + A +LF  +  KGC  N  TYN  I
Sbjct: 378 KATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMI 437

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
                   +D+A+ M  KM+  N  +P + ++  II +L E  +  +A   L E++
Sbjct: 438 SGLCKEGMLDEALAMKSKMEE-NGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMI 492



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 13/180 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + LI    + G +  AL     M       DV  Y  +++ALC+  N +KA  L  
Sbjct: 325 TVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFM 384

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M+  G +  P+ YTYT LI   CK G           R   A  LF+ +L KG   +V 
Sbjct: 385 KMKERGIQ--PNKYTYTALIDGLCKGG-----------RHKNAQKLFQHLLVKGCRINVW 431

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN +I G CK   ++ AL +   M + GCIP+ VT+   IR     ++ DKA +++ +M
Sbjct: 432 TYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEM 491



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  LF+ M  KG  PD+   N LI+  C   ++  +  +   + K G  PN +T N+ ++
Sbjct: 29  AISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMK 88

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGS 389
              +  E+ K++    K+  +  G      SY  +++ LC+ G    A   L  + D  +
Sbjct: 89  GLCLKGEVKKSLHFHDKV--VAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRST 146

Query: 390 VPREYTYKLVCDAL 403
            P    Y  + D L
Sbjct: 147 RPNVVMYNTIIDGL 160


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 131/300 (43%), Gaps = 49/300 (16%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           N +T   M   F     ++     L DM +      V T ++  +I  L +  ++ +A  
Sbjct: 322 NNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTI--VISALCKRKMIEQAYG 379

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
              +M++  C P++Y YN +I  LC V    +A  L+  ME  G   PP++YTYTIL   
Sbjct: 380 VLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGV--PPNIYTYTILTHG 437

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            CK            RR+  A  +F   L +G  P+ V YN L++G C+  R+  A+++ 
Sbjct: 438 LCKL-----------RRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDIL 486

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP-------------- 356
            +M++  C P+ VTY + I+     N++  A+ M  +M+N  + V               
Sbjct: 487 KEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARV 546

Query: 357 --------------------TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
                               ++S Y   IH L  AG + EA+  L E+++ G  P   TY
Sbjct: 547 GNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTY 606



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 134/357 (37%), Gaps = 54/357 (15%)

Query: 97  LGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLK 156
           L P A      +      A  F+ W ++   + HN      M  +  R      L   L+
Sbjct: 181 LNPDAVVKVLNLQTDAQNALRFFQWADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQ 240

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY--AYNVVINAL 214
            M  +  G  +T S +   +   G  G   E+L  F  MK+    P +   AYN V+ +L
Sbjct: 241 KMQTQ--GREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSL 298

Query: 215 CRVGNFNKARFLLEQMELPGFRC---------------------------------PPDV 241
            +    + A  L  QM   G  C                                  PDV
Sbjct: 299 VKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDV 358

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            TYTI+IS+ CK           R+ I +A  + + M   G  P++  YN LI G C   
Sbjct: 359 VTYTIVISALCK-----------RKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVR 407

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
           R E ALEL   M + G  PN  TY         +  +D+A EM  +   L  G+ P   +
Sbjct: 408 RPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEA--LARGLKPNRVT 465

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           Y  +++  C   R++EA D L E+      P   TY  +   L    +   L D LR
Sbjct: 466 YNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQ---LPDALR 519



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 25/260 (9%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVI 211
           +FL  M++  N + V        +KVL  +     AL  F +  KQ     +  AY  +I
Sbjct: 172 NFLNSMAQDLNPDAV--------VKVLNLQTDAQNALRFFQWADKQEGYDHNTDAYFTMI 223

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + L R   F + + LL++M+  G        T ++L S    YG ++G       R  E+
Sbjct: 224 DILGRAKMFTELQSLLQKMQTQGREI-----TRSMLHSFVMSYG-RSG-------RFKES 270

Query: 272 NHLFRLMLFKGFVPDVV--AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
              F LM   G+ P ++  AYN ++    K  +++ A  LF  M   G   N +TY S I
Sbjct: 271 LEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMI 330

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
           + + +  +++ A++++  M   N+  P   +YT +I ALC+   + +A   L ++ + G 
Sbjct: 331 QCFFLKEKMEDAMKLLDDMIQNNY-APDVVTYTIVISALCKRKMIEQAYGVLQKMRENGC 389

Query: 390 VPREYTYKLVCDALNAAEEP 409
            P  YTY  +   L A   P
Sbjct: 390 EPNIYTYNALIQGLCAVRRP 409



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 89/231 (38%), Gaps = 25/231 (10%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EA+     M Q  C PD   Y  +I  L +      A  + ++ME  G+    D  T  I
Sbjct: 481 EAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFD--TLNI 538

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           L     + G              +A+  +R M  +GF      Y   I        +E A
Sbjct: 539 LARGLARVGNHK-----------DASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEA 587

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
             L  +M  KG  PN  TYN+ I+ +     +D A  M+  M  + +G+ P + SY  +I
Sbjct: 588 QALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFM--IENGIGPDTGSYNILI 645

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
                 GR  +A    A  ++ G         +V +     +EP  L +GL
Sbjct: 646 KEFHNQGRTQDADQLYATALERG---------VVLNPKPVIQEPDELPEGL 687



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 15/191 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + RG+ +    D LK+M +  N       + T LI+ L +   + +AL     M+     
Sbjct: 473 YCRGSRLIEAMDILKEMHQ--NDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYD 530

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            +    N++   L RVGN   A     +M+  GF      Y   I    +C         
Sbjct: 531 VNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAI----HCL-------- 578

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
            +    + EA  L   M+ KG+ P++  YN +I G C+  R++ A  + + M + G  P+
Sbjct: 579 -STAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPD 637

Query: 322 RVTYNSFIRYY 332
             +YN  I+ +
Sbjct: 638 TGSYNILIKEF 648


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 157/314 (50%), Gaps = 30/314 (9%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWD-FLKDMSRRGNGELVTTS 170
           L+KA+EF   VE +    +N++    +G    R ++V  L++ +++D     +       
Sbjct: 34  LSKASEFGCRVEAYA---YNKLMSSLIG--RGRVHDVVALFERWIQDRVYSPD-----VW 83

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   +IK +   G V +AL    RM +F C PD   +N++++ LCR    ++   +L ++
Sbjct: 84  SFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRL 143

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  G  C P+V T+T +IS YCK G           ++ +A  ++  M+  G +P+ V Y
Sbjct: 144 QRDGV-CMPNVVTFTSVISGYCKAG-----------KLEDAMAVYNDMVASGIMPNTVTY 191

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI+G  K   +  A+E++  M +  C P+ VT++S I  Y    ++D A+ +   M  
Sbjct: 192 NVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMA- 250

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL-VDGGSVPREYTYKLVCDAL---NA 405
             H + P   +++ IIH+LC+  R  EA   L EL +     P+ + Y  V D L     
Sbjct: 251 -QHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGK 309

Query: 406 AEEPSLLDDGLRKR 419
            +E +L+  G+ ++
Sbjct: 310 VDEANLIRKGMEEK 323



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 136/283 (48%), Gaps = 30/283 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+  L   G V++ +A F R  Q R   PDV+++NVVI  +CRVG   KA  L+E+M   
Sbjct: 52  LMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMN-- 109

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF-VPDVVAYNC 292
            F C PD  T+ IL+   C+              +   + + R +   G  +P+VV +  
Sbjct: 110 EFGCSPDTVTHNILVDGLCR-----------TNEVSRGHEVLRRLQRDGVCMPNVVTFTS 158

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +I G CK  ++E A+ +++DM   G +PN VTYN  I  Y  V ++  A+E+ ++M  L 
Sbjct: 159 VISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRL- 217

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEE 408
              P   +++ +I   C  G++ +A    +++      P  YT+ ++    C    + E 
Sbjct: 218 RCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEA 277

Query: 409 PSLLDD-GLRKRIRDGIEYRFRQVMKVKPIMKHKELLKCGEID 450
             LL++  LR  I         Q     P++    L KCG++D
Sbjct: 278 IGLLNELNLRPDIAP-------QAFIYNPVI--DVLCKCGKVD 311



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 16/229 (6%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
            +G +  T +   LI   G+ G +  A+  + +M + RC PDV  ++ +I+  CR G  +
Sbjct: 181 ASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLD 240

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF-RLMLF 280
            A  +   M     R  P+VYT++I+I S CK           + R  EA  L   L L 
Sbjct: 241 DALRIWSDM--AQHRIQPNVYTFSIIIHSLCK-----------QNRSDEAIGLLNELNLR 287

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
               P    YN +ID  CK  +++ A  +   M +KGC P++ TY   I  Y + + I +
Sbjct: 288 PDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISE 347

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
           AI    +M       P S +    I  L +AG   E  D +  L  GG+
Sbjct: 348 AIMFFHEMVEAGCS-PDSITVNCFISCLLKAGMPNEV-DHVMRLASGGA 394



 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/143 (20%), Positives = 57/143 (39%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G+ PD    + L+  C     ++ +  L    ++ GC      YN  +        +   
Sbjct: 6   GYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDV 65

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           + +  +        P   S+  +I  +C  G+V +A + +  + + G  P   T+ ++ D
Sbjct: 66  VALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVD 125

Query: 402 ALNAAEEPSLLDDGLRKRIRDGI 424
            L    E S   + LR+  RDG+
Sbjct: 126 GLCRTNEVSRGHEVLRRLQRDGV 148


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 17/226 (7%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           + +M    C P+V  YN  +N L R G    A+ + E+M   G  C PDV TY+ LI  +
Sbjct: 180 YKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAG--CSPDVITYSTLIHGF 237

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
                      ++ R+  +A+ LF  M+ +G  P+ V YNCL+ G CK  + + A ELF 
Sbjct: 238 -----------SLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFR 286

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
            M ++GC P++VTY + +  +  V +I++A+E+  +M +  H  P   +Y  ++     A
Sbjct: 287 KMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHD-PDVVAYNCLLKGFFRA 345

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           G+  EAR     +V     P   ++ ++ D L+ A+    LDD + 
Sbjct: 346 GKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKR---LDDAVE 388



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 13/221 (5%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++A   F  M    CRP+   YN +++ LC+    ++A  L  +M   G  C PD  TYT
Sbjct: 244 DQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG--CDPDKVTYT 301

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            L+  +C  G           +I +A  +F  M+ KG  PDVVAYNCL+ G  +  +   
Sbjct: 302 TLLYGFCNVG-----------KIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGE 350

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A +LF  M  + C P+ V++N  I   S    +D A+E+  +M+  +   P   +Y  +I
Sbjct: 351 ARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLI 410

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
             LC   R+ EA     E+      P  + + ++ +A+ AA
Sbjct: 411 FGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAA 451



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 119/257 (46%), Gaps = 17/257 (6%)

Query: 173 TC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           TC  +I+ L + G V+ AL+    M +    PD+  ++++IN LC+     +A+  L+ M
Sbjct: 51  TCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGM 110

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF-KGFVPDVVA 289
                      ++Y  L++S CK            +++ +A  +F  M+  +  VPDVV+
Sbjct: 111 NRTISTRASSCFSYNSLLNSLCK-----------AKKVHQAFAIFSTMVSERSVVPDVVS 159

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y+ LIDG CK   + RA +L+  M    C+PN  TYN+F+        I  A  +  +M 
Sbjct: 160 YSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEM- 218

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            ++ G  P   +Y+ +IH    A +  +A +    ++  G  P   TY  +   L    +
Sbjct: 219 -ISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESK 277

Query: 409 PSLLDDGLRKRIRDGIE 425
           P    +  RK +  G +
Sbjct: 278 PDEAHELFRKMVERGCD 294



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 99/201 (49%), Gaps = 15/201 (7%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CL+  L +E   +EA   F +M +  C PD   Y  ++   C VG   +A  + ++M   
Sbjct: 267 CLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSK 326

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    PDV  Y  L+  + + G           +  EA  LF++M+ +   PD V++N +
Sbjct: 327 GH--DPDVVAYNCLLKGFFRAG-----------KPGEARQLFQVMVSRECKPDTVSHNIM 373

Query: 294 IDGCCKTYRIERALELFDDMNK-KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           IDG  K  R++ A+E+F+ M +  GC P+ VTYNS I        + +A+++ +++  L 
Sbjct: 374 IDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLK 433

Query: 353 HGVPTSSSYTPIIHALCEAGR 373
              P   ++  ++ A+  AG 
Sbjct: 434 LS-PDPHAFNVLLEAMYAAGH 453



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV---TYNSFIRYYSVVNEIDKAIEM 344
           VA+   + G CK+ +IE+A E    M +           T +S I+       +D A+ +
Sbjct: 12  VAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSL 71

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           +  M    +  P  ++++ +I+ LC+A ++ EA++FL
Sbjct: 72  LETMIKRGY-CPDMATHSMLINELCKADKIQEAQEFL 107


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 24/281 (8%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A E  H V R      +  +C  +     RG ++K + + L +M +R     V T  +  
Sbjct: 265 AWEVLHCVMRLGGAV-DAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGI-- 321

Query: 175 LIKVLGEEGLVNEALATFYRMKQ------FRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           L+  L +   ++EAL  F R++           PDV  +N +I+ LC+VG       LLE
Sbjct: 322 LVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLE 381

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M++ G    P+  TY  LI  + K G               A+ LFR M  +G  P+V+
Sbjct: 382 EMKM-GNINRPNTVTYNCLIDGFFKAG-----------NFDRAHELFRQMNEEGVQPNVI 429

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
             N L+DG CK  R+ RA+E F++M  KG   N  TY + I  +  VN I++A++   +M
Sbjct: 430 TLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEM 489

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             L+ G  P +  Y  +I  LC AGR+ +A   +++L   G
Sbjct: 490 --LSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAG 528



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 128/280 (45%), Gaps = 23/280 (8%)

Query: 150 GLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           G +D   ++ R+ N E V  + +T   L+  L + G V+ A+  F  MK    + +   Y
Sbjct: 407 GNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATY 466

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
             +I+A C V N N+A    E+M   G  C PD   Y  LIS  C  G           R
Sbjct: 467 TALISAFCGVNNINRAMQCFEEMLSSG--CSPDAVVYYSLISGLCIAG-----------R 513

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + +A+ +   +   GF  D   YN LI G CK  ++ER  EL  +M + G  P+ +TYN+
Sbjct: 514 MNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNT 573

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            I Y     +   A ++M KM  +  G+ P+  +Y  IIHA C    V E      E+  
Sbjct: 574 LISYLGKTGDFATASKVMEKM--IKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCS 631

Query: 387 GGSV-PREYTYKLVCDAL----NAAEEPSLLDDGLRKRIR 421
              V P    Y ++ DAL    +     SL++D   KR+R
Sbjct: 632 TSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVR 671



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 107/247 (43%), Gaps = 15/247 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           +F  +M  +G G     ++ T LI        +N A+  F  M    C PD   Y  +I+
Sbjct: 449 EFFNEM--KGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLIS 506

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC  G  N A  ++ +++L GF    D   Y +LIS +CK        K    R++E  
Sbjct: 507 GLCIAGRMNDASVVVSKLKLAGFSL--DRSCYNVLISGFCK--------KKKLERVYE-- 554

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L   M   G  PD + YN LI    KT     A ++ + M K+G  P+ VTY + I  Y
Sbjct: 555 -LLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAY 613

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
                +D+ +++  +M + +   P +  Y  +I ALC    V  A   + ++      P 
Sbjct: 614 CSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPN 673

Query: 393 EYTYKLV 399
             TY  +
Sbjct: 674 TTTYNAI 680



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 14/155 (9%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M++   +PD   YN +I+ L + G+F  A  ++E+M   G R  P V TY  +I +YC  
Sbjct: 559 MEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLR--PSVVTYGAIIHAYCS- 615

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRIERALELFDDM 313
                     ++ + E   +F  M     VP + V YN LID  C+   ++RA+ L +DM
Sbjct: 616 ----------KKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDM 665

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
             K   PN  TYN+ ++       + KA E+M +M
Sbjct: 666 KVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRM 700



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 20/220 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
           F +   ++ +++ L +M   G    V   ++T   LI  LG+ G    A     +M +  
Sbjct: 543 FCKKKKLERVYELLTEMEETG----VKPDTITYNTLISYLGKTGDFATASKVMEKMIKEG 598

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
            RP V  Y  +I+A C   N ++   +  +M     + PP+   Y ILI + C+      
Sbjct: 599 LRPSVVTYGAIIHAYCSKKNVDEGMKIFGEM-CSTSKVPPNTVIYNILIDALCR------ 651

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   +  A  L   M  K   P+   YN ++ G      + +A EL D M ++ C 
Sbjct: 652 -----NNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACR 706

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
           P+ +T      + S V EI+K    +   Q+ ++  P SS
Sbjct: 707 PDYITMEVLTEWLSAVGEIEKLKHFVEGYQDSSY--PASS 744



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 27/262 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQMELP 233
           L++VL + G   +AL     M Q      V    +V   L R G +F     +    +L 
Sbjct: 180 LLRVLLKSGRAGDALHVLDEMPQANSGFSVTG-EIVFGELVRSGRSFPDGEVVGLVAKLG 238

Query: 234 GFRCPPDVYTYTILISSYC---KYGMQTGCRKAIRRRIWEANH-LFRLMLFKGFVPDVVA 289
                PD +  T L+   C   K G+            WE  H + RL    G   D  +
Sbjct: 239 ERGVFPDGFKLTQLVGKLCGDQKNGVA-----------WEVLHCVMRL----GGAVDAAS 283

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
            N L+    +   I+R  EL  +M K+   P+ VT+   + +      ID+A+++  +++
Sbjct: 284 CNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLR 343

Query: 350 NLNH----GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG-SVPREYTYKLVCDAL 403
                   GV P    +  +I  LC+ G+  +    L E+  G  + P   TY  + D  
Sbjct: 344 GKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGF 403

Query: 404 NAAEEPSLLDDGLRKRIRDGIE 425
             A       +  R+   +G++
Sbjct: 404 FKAGNFDRAHELFRQMNEEGVQ 425


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 128/278 (46%), Gaps = 45/278 (16%)

Query: 160 RRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           RR +G+LV    V    +I  L ++ LVN+A   ++ M   R  P V  YN +I  LC +
Sbjct: 141 RRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIM 200

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR------------ 265
                A  LL +M L      P VYT++ILI ++CK G     +                
Sbjct: 201 AQLKDAIGLLHKMILEDIN--PTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIV 258

Query: 266 --------------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
                                     + + EA +LF  M FK   PD+V YN LIDG CK
Sbjct: 259 TYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCK 318

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTS 358
           + R   AL+   +M+ +G  P+  TYNS +        +DKAIE++ K++  + G+ P+ 
Sbjct: 319 SGRTPYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLK--DQGIQPSV 376

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +Y  +I+ LC++GR+ +A     +L+  G     YTY
Sbjct: 377 CTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTY 414



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 109/246 (44%), Gaps = 26/246 (10%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L + G    AL    R+     +PDV  YN +I+ LC+    N A  L    
Sbjct: 119 SYGTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLY--F 176

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E+   R  P V TY  LI   C           I  ++ +A  L   M+ +   P V  +
Sbjct: 177 EMVAKRICPSVVTYNTLICGLC-----------IMAQLKDAIGLLHKMILEDINPTVYTF 225

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA-------IE 343
           + LID  CK  +++ A  +F  M K+   PN VTYNS +  + +VN + KA       I+
Sbjct: 226 SILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIK 285

Query: 344 MMRKMQNLNHGV------PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           M+ +  NL   +      P    Y  +I  LC++GR   A  F+ E+   G  P  +TY 
Sbjct: 286 MVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYN 345

Query: 398 LVCDAL 403
            + DAL
Sbjct: 346 SLLDAL 351



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 127/275 (46%), Gaps = 28/275 (10%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           LVT S +      LG+  L   + + F  + +     D   +  +I  LC  G  +KA  
Sbjct: 47  LVTLSILINCYSQLGQNAL---SFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALH 103

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
             +++   GF+   +  +Y  LI+  CK G QT       RRI            K   P
Sbjct: 104 FHDKVVAQGFKL--NQVSYGTLINGLCKVG-QTRAALEFLRRIDG----------KLVQP 150

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           DVV YN +IDG CK   +  A  L+ +M  K   P+ VTYN+ I    ++ ++  AI ++
Sbjct: 151 DVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLL 210

Query: 346 RKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA- 402
            KM  +++N   PT  +++ +I A C+ G++ EA++  A ++     P   TY  + D  
Sbjct: 211 HKMILEDIN---PTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGH 267

Query: 403 --LNAAEEPSLLDDGLRKRIRDGI----EYRFRQV 431
             +N  ++   + + + K + + +    E  F+Q+
Sbjct: 268 HLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQI 302



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 15/210 (7%)

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           +V+EA+  F  M   +  PD+  YN +I+ LC+ G    A   + +M   G   PPD++T
Sbjct: 286 MVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRG--QPPDIFT 343

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           Y  L+ + CK              + +A  L   +  +G  P V  YN LI+G CK+ R+
Sbjct: 344 YNSLLDALCK-----------NYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRL 392

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           + A ++F+D+  KG   +  TYN+ I+ +      D+ + M+ KM++ +   P + +   
Sbjct: 393 KDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKD-SGCSPDAKNCEI 451

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           II +L + G   +A  F  E++  G   RE
Sbjct: 452 IIRSLFDKGENDKAGKF-REMIVRGKCHRE 480



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           F+ +M  RG    + T +   L+  L +   V++A+    ++K    +P V  YN++IN 
Sbjct: 328 FIGEMHYRGQPPDIFTYN--SLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILING 385

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
           LC+ G    A  + E + + G+    DVYTY  +I  +CK G+
Sbjct: 386 LCKSGRLKDAEKVFEDLLVKGYN--TDVYTYNAMIKGFCKKGL 426



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 11/148 (7%)

Query: 264 IRRRIWEANH------LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
           I   + +ANH      L R M F G   ++V  + LI+   +  +   +  +F ++ KKG
Sbjct: 18  ILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQNALSFSVFANILKKG 77

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLE 376
              + +T+ + I+   +  EI KA+    K+  +  G   +  SY  +I+ LC+ G+   
Sbjct: 78  YGSDAITFTTLIKGLCLKGEIHKALHFHDKV--VAQGFKLNQVSYGTLINGLCKVGQTRA 135

Query: 377 ARDFLAELVDGGSV-PREYTYKLVCDAL 403
           A +FL   +DG  V P    Y  + D L
Sbjct: 136 ALEFLRR-IDGKLVQPDVVMYNTIIDGL 162


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 133/278 (47%), Gaps = 25/278 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + LI +  +EG V EA      M +    P+V  YN +++         +AR L + M
Sbjct: 303 TFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVM 362

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G  C PDV++Y+ILI+ YC           + +RI EA  LF  M+ +G  P+ V+Y
Sbjct: 363 ITRG--CKPDVFSYSILINGYC-----------MVKRIDEAKQLFNEMIHQGLTPNTVSY 409

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI   C+  ++  A ELF DM+  G +P+  TY+  +  +     + KA  + R MQ 
Sbjct: 410 TTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQG 469

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
             +  P    YT +I ++C++G +  AR   +EL   G  P    Y  +   +N   +  
Sbjct: 470 -TYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTI---INGLCKEG 525

Query: 411 LLDDGL---RKRIRDGI---EYRFRQVMKVKPIMKHKE 442
           LLD+ L   RK   DG    E+ +  +  ++  ++HK+
Sbjct: 526 LLDEALEAFRKMEEDGCPPNEFSYNVI--IRGFLQHKD 561



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 18/236 (7%)

Query: 165 ELVTTSSVTCLIKVLGE----EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           EL   S  TC + +L         V+   +   ++ +   +P +  +  +IN LC+ G F
Sbjct: 118 ELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEF 177

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            +A  L + M   G  C PDVYTYT +I+  CK G +T     + +++ E          
Sbjct: 178 AQALELFDDMVARG--CQPDVYTYTTIINGLCKMG-ETAAAAGLIKKMGEV--------- 225

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  PDVV Y+ LID  CK   +  AL++F  M  KG  P  V+Y S I+     +   +
Sbjct: 226 -GCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKE 284

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           A  M+ +M +LN  +P   +++ +I   C+ G VLEA+  L  + + G  P   TY
Sbjct: 285 ASAMLNEMTSLNI-MPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITY 339



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T S T LI    + G + EA   F  M      PD+  Y+V++   C+ G   KA  L  
Sbjct: 406 TVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFR 465

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M+  G    P++  YTILI S CK G     RK           LF  +   G  PDV 
Sbjct: 466 AMQ--GTYLKPNLVMYTILIDSMCKSGNLNHARK-----------LFSELFVHGLQPDVQ 512

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  +I+G CK   ++ ALE F  M + GC PN  +YN  IR +    +  +A++++ +M
Sbjct: 513 IYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEM 572

Query: 349 QN 350
           ++
Sbjct: 573 RD 574



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 15/220 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL-EQMELPGFRCPPDVYT 243
           +++ALA+F  M   +  P +  +N +++A+ R+  +  A   L +QMEL G    P+  T
Sbjct: 71  IDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGL--SPNTCT 128

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
             ILI+ +C           + + +     +   ++  G  P ++ +  LI+G CK    
Sbjct: 129 LNILINCFC-----------LMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEF 177

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
            +ALELFDDM  +GC P+  TY + I     + E   A  +++KM  +    P   +Y+ 
Sbjct: 178 AQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQ-PDVVTYST 236

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +I +LC+   V EA D  + +   G  P   +Y  +   L
Sbjct: 237 LIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGL 276



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 15/172 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           +  KDM    NG L    + + L++   ++G + +A   F  M+    +P++  Y ++I+
Sbjct: 427 ELFKDM--HTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILID 484

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           ++C+ GN N AR L  ++ + G +  PDV  YT +I+  CK G+           + EA 
Sbjct: 485 SMCKSGNLNHARKLFSELFVHGLQ--PDVQIYTTIINGLCKEGL-----------LDEAL 531

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             FR M   G  P+  +YN +I G  +     RA++L  +M  KG + +  T
Sbjct: 532 EAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVADEGT 583


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 14/249 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  LG+ G   +AL  F  M++  C PD   YNV+I+ L + G  ++A  LLE M   G
Sbjct: 123 LMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKG 182

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD  TY I+I      G           R  +A   F +M  +   PDVV YN L+
Sbjct: 183 IM--PDCRTYNIVIDVLSSCG-----------RYEKAYSFFGMMKRRKHSPDVVTYNTLL 229

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G  K  R + A +LFD+M    C+P+  T+ + I   +    ++ A+E   ++  + H 
Sbjct: 230 NGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGH- 288

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
           VP S  Y  +I   C +G+V +  +   ++++    P   TY ++    +     S+  +
Sbjct: 289 VPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAME 348

Query: 415 GLRKRIRDG 423
            L++ +R+G
Sbjct: 349 LLQEMVREG 357



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 125/256 (48%), Gaps = 16/256 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +   V    + L+DM+R+G      T ++  +I VL   G   +A + F  MK+ +  
Sbjct: 162 LGKQGKVDEALELLEDMNRKGIMPDCRTYNI--VIDVLSSCGRYEKAYSFFGMMKRRKHS 219

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  YN ++N L ++   ++A  L ++M+    +C PD+ T+  LI +  K G      
Sbjct: 220 PDVVTYNTLLNGLKKLRRTDEACDLFDEMQ--ANKCMPDLTTFGTLIDTLAKAG------ 271

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A      ++  G VP+   YN LI G C++ ++++  ELF DM +  C P+
Sbjct: 272 -----RMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPD 326

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            +TY   +  +S       A+E++++M    H  P  ++Y  +I +L  AG+V +A    
Sbjct: 327 SITYTILVLGFSRRGHTSMAMELLQEMVREGH-TPALATYNVLIRSLSMAGQVEDAYTLF 385

Query: 382 AELVDGGSVPREYTYK 397
            E++  G  P   TY 
Sbjct: 386 KEMIAKGFNPDMQTYS 401



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 112/251 (44%), Gaps = 17/251 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L+  L +     +ALA F  M     + DV   N +I+  CR+G   +AR LL  M
Sbjct: 49  SFDTLVIFLCKMSRATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHM 108

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
               F    DV+TY+ L+ +  K G           R  +A  +F  M   G +PD V Y
Sbjct: 109 TAHAF--VLDVFTYSYLMDALGKAG-----------RAAKALEVFSNMQKAGCMPDTVVY 155

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI    K  +++ ALEL +DMN+KG +P+  TYN  I   S     +KA      M+ 
Sbjct: 156 NVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKR 215

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
             H  P   +Y  +++ L +  R  EA D   E+     +P   T+  + D L  A    
Sbjct: 216 RKHS-PDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGR-- 272

Query: 411 LLDDGLRKRIR 421
            ++D L +  R
Sbjct: 273 -MEDALEQSAR 282



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 15/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           LI    + G  + AL  F R+KQ   C+P+  +++ ++  LC++     A  + ++M   
Sbjct: 17  LIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGA 76

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G +   DV     LI   C+ GM           + +A  L   M    FV DV  Y+ L
Sbjct: 77  GLQ--ADVNVCNTLIHCTCRLGM-----------LRQARRLLHHMTAHAFVLDVFTYSYL 123

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +D   K  R  +ALE+F +M K GC+P+ V YN  I       ++D+A+E++  M N   
Sbjct: 124 MDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDM-NRKG 182

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +P   +Y  +I  L   GR  +A  F   +      P   TY  + + L
Sbjct: 183 IMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGL 232



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G + +AL    R+ +    P+ Y YN +I+  CR G  +K   L + M    
Sbjct: 263 LIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDM--IE 320

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD  TYTIL+  + + G  +            A  L + M+ +G  P +  YN LI
Sbjct: 321 CSCFPDSITYTILVLGFSRRGHTS-----------MAMELLQEMVREGHTPALATYNVLI 369

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
                  ++E A  LF +M  KG  P+  TY++ 
Sbjct: 370 RSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 403


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 137/304 (45%), Gaps = 59/304 (19%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKEM +  A        ++ L+ +S RG    + T ++  L++ L   G  +E       
Sbjct: 254 CKEMMVDKA--------FELLRSLSSRGCKPDIITYNI--LLRTLLSRGKWSEGEKLISE 303

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M    C+P+V  ++++I  LCR G   +A  LL  M+  G +  PD Y Y  LI+ +C+ 
Sbjct: 304 MISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLK--PDAYCYDPLIAGFCRE 361

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           R+  A      M+  G +PD+V YN ++ G C+T + ++ALE+F+ ++
Sbjct: 362 G-----------RLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLD 410

Query: 315 KKGCIPN-----------------------------------RVTYNSFIRYYSVVNEID 339
           + GC PN                                    +TYNS I        +D
Sbjct: 411 EVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVD 470

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           +AIE++  MQ+  +  P   SY  I+  LC+  R  +A + LA + + G  P E TY L+
Sbjct: 471 EAIELLVDMQSGRYR-PNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILL 529

Query: 400 CDAL 403
            + +
Sbjct: 530 IEGI 533



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 14/228 (6%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   +I+ + +E +V++A      +    C+PD+  YN+++  L   G +++   L+ 
Sbjct: 243 TLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLIS 302

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M   G  C P+V T++ILI + C+ G           ++ EA +L R M  KG  PD  
Sbjct: 303 EMISIG--CKPNVVTHSILIGTLCRDG-----------KVEEAVNLLRSMKEKGLKPDAY 349

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y+ LI G C+  R++ A E  + M   GC+P+ V YN+ +       + D+A+E+  K+
Sbjct: 350 CYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKL 409

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             +    P  SSY  +  AL  +G    A + + +L++ G  P E TY
Sbjct: 410 DEVGCP-PNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITY 456



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 17/222 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G  NE+L     M      PDV     +I       N  KA  ++E +E  G    PDV+
Sbjct: 83  GKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG---KPDVF 139

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
            Y  LIS + K             ++  AN +   M  +GF+PDVV YN +I   C   +
Sbjct: 140 AYNALISGFIK-----------ANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGK 188

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           ++ ALE+F+++ K  C P  +TY   I    +   ID A++++ +M  L+ G+ P + +Y
Sbjct: 189 LDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEM--LSKGLEPDTLTY 246

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             II  +C+   V +A + L  L   G  P   TY ++   L
Sbjct: 247 NAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTL 288


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 131/252 (51%), Gaps = 21/252 (8%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            L+ MS+ G    +VT +++   I  L E+  V+ A+    +MK + C+PD+  YN ++ 
Sbjct: 329 LLEKMSKHGCTANIVTYNAI---INGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLK 385

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC    +  A  L++ M   G  C PD  T+  LI   C+ G+           + +A 
Sbjct: 386 GLCSAAQWVDAEELMDNMTQNG--CLPDNVTFNTLIGFLCQKGL-----------MVDAI 432

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F+ M  KG  P+ + Y+ +I G  K  ++++ALELF++M  KG  P+++ Y       
Sbjct: 433 EVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI-YQLLAECL 491

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           +  + I++AI+ +RK+Q+   G+ P +  Y  I+  LC  G+   A D +A +V  G +P
Sbjct: 492 NDDDTIEEAIQTVRKLQD--SGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMP 549

Query: 392 REYTYKLVCDAL 403
            + TY ++ + L
Sbjct: 550 DDLTYVILIEGL 561



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 19/197 (9%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V AY  + +  CR G    AR ++  M +      P+ YTY  LI + C+ G        
Sbjct: 135 VVAYGALTDGYCRAGRLGDARRVVGGMPVQ-----PNAYTYNPLIHTLCERG-------- 181

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              ++ +A  +   ML +G  PDVV YN L++  CK     +A+EL D M  +GC PN V
Sbjct: 182 ---QVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNV 238

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           TYN  +       ++D A+E++R +   +HG  P++ +Y  ++  LC A R  +A + + 
Sbjct: 239 TYNVLMDGMCGEGDVDDALELLRNLP--SHGCKPSTVNYNTVLKGLCSAERWGDADELVT 296

Query: 383 ELVDGGSVPREYTYKLV 399
           E++     P E T+ +V
Sbjct: 297 EMLRENCPPNEATFNVV 313



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 114/247 (46%), Gaps = 20/247 (8%)

Query: 164 GELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
            E  T ++VT   L+  +  EG V++AL     +    C+P    YN V+  LC    + 
Sbjct: 230 AEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWG 289

Query: 222 KARFLLEQMELPGFR--CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279
            A  L+ +M     R  CPP+  T+ ++I S C+ G+           + +A  L   M 
Sbjct: 290 DADELVTEM----LRENCPPNEATFNVVIYSLCRKGL-----------LQQAIQLLEKMS 334

Query: 280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
             G   ++V YN +I+G C+   ++ A+ L   M   GC P+ VTYN+ ++      +  
Sbjct: 335 KHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWV 394

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            A E+M  M   N  +P + ++  +I  LC+ G +++A +   ++ D G  P   TY  +
Sbjct: 395 DAEELMDNMTQ-NGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTI 453

Query: 400 CDALNAA 406
              L  A
Sbjct: 454 ISGLAKA 460



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 110/245 (44%), Gaps = 20/245 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L E G V +AL+    M    C PDV  YN+++ A C+   + +A  L++ M   G
Sbjct: 173 LIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEG 232

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+  TY +L+   C  G            + +A  L R +   G  P  V YN ++
Sbjct: 233 --CTPNNVTYNVLMDGMCGEG-----------DVDDALELLRNLPSHGCKPSTVNYNTVL 279

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   R   A EL  +M ++ C PN  T+N  I        + +AI+++ KM    HG
Sbjct: 280 KGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSK--HG 337

Query: 355 VPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEP 409
              +  +Y  II+ LCE   V  A   L+++   G  P   TY    K +C A    +  
Sbjct: 338 CTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAE 397

Query: 410 SLLDD 414
            L+D+
Sbjct: 398 ELMDN 402



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 14/203 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P+ Y YN +I+ LC  G    A  +L+ M   G  C PDV TY IL+ + CK       
Sbjct: 164 QPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRG--CAPDVVTYNILLEATCK------- 214

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                R   +A  L  LM  +G  P+ V YN L+DG C    ++ ALEL  ++   GC P
Sbjct: 215 ----GRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKP 270

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + V YN+ ++          A E++ +M   N   P  +++  +I++LC  G + +A   
Sbjct: 271 STVNYNTVLKGLCSAERWGDADELVTEMLRENC-PPNEATFNVVIYSLCRKGLLQQAIQL 329

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L ++   G      TY  + + L
Sbjct: 330 LEKMSKHGCTANIVTYNAIINGL 352


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 131/266 (49%), Gaps = 26/266 (9%)

Query: 153 DFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +   +MS +G +  +VT S++     ++G+   + EAL     M      PDVY YN ++
Sbjct: 224 NLFSEMSVKGISANVVTYSAIIHGFCIVGK---LTEALGFLNEMVLKAINPDVYIYNTLV 280

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-- 269
           +AL + G   +A+ +L  +     +  P+V TY  LI  Y K+         +   +W  
Sbjct: 281 DALHKEGKVKEAKNVLAVIVKTCLK--PNVITYNTLIDGYAKHVFNAVGLMGVTPDVWSY 338

Query: 270 --------------EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                         EA +L++ M  K  VP+ V YN LIDG CK+ RI  A +L D+M+ 
Sbjct: 339 NIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHD 398

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA-LCEAGR 373
           +G   N +TYNS I       ++DKAI ++ KM+  + G+ P   +   ++H  LC+  R
Sbjct: 399 RGHHANVITYNSLINGLCKNGQLDKAIALINKMK--DQGIQPDMYTLNILLHGLLCKGKR 456

Query: 374 VLEARDFLAELVDGGSVPREYTYKLV 399
           +  A+    +L+D G  P  YTY ++
Sbjct: 457 LKNAQGLFQDLLDKGYHPNVYTYNII 482



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 24/246 (9%)

Query: 160 RRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           RR +G L   + V    +I  L +  LV+EA   F  M       +V  Y+ +I+  C V
Sbjct: 192 RRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIV 251

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G   +A   L +M L      PDVY Y  L+ +  K G           ++ EA ++  +
Sbjct: 252 GKLTEALGFLNEMVLKAIN--PDVYIYNTLVDALHKEG-----------KVKEAKNVLAV 298

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           ++     P+V+ YN LIDG  K         +F+ +   G  P+  +YN  I     +  
Sbjct: 299 IVKTCLKPNVITYNTLIDGYAK--------HVFNAVGLMGVTPDVWSYNIMINRLCKIKR 350

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           +++A+ + ++M   N  VP + +Y  +I  LC++GR+  A D + E+ D G      TY 
Sbjct: 351 VEEALNLYKEMHQKNM-VPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYN 409

Query: 398 LVCDAL 403
            + + L
Sbjct: 410 SLINGL 415



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 31/234 (13%)

Query: 186 NEALATFYRMKQF-------------RCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           N+ L +F +MK +               +PD +  N++IN  C +G  N A  +L ++  
Sbjct: 67  NKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFSVLSKILK 126

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G++  PD  T T LI   C           ++ ++ +A H    +L +GF  D V+Y  
Sbjct: 127 WGYQ--PDTVTLTTLIKGLC-----------LKGQVKKALHFHDKLLAQGFRLDQVSYGT 173

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QN 350
           LI+G CK      A++L   ++ +   PN V YN+ I        + +A  +  +M  + 
Sbjct: 174 LINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKG 233

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           ++  V T   Y+ IIH  C  G++ EA  FL E+V     P  Y Y  + DAL+
Sbjct: 234 ISANVVT---YSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALH 284



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 20/235 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           ++  LI      G +N A +   ++ ++  +PD      +I  LC  G   KA    +++
Sbjct: 100 TLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKL 159

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR---RIWEANHLFRLMLFKGFVPDV 287
              GFR   D  +Y  LI+  CK G      + +RR   R+ E              P+V
Sbjct: 160 LAQGFRL--DQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTE--------------PNV 203

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V YN +ID  CK   +  A  LF +M+ KG   N VTY++ I  + +V ++ +A+  + +
Sbjct: 204 VMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNE 263

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           M  L    P    Y  ++ AL + G+V EA++ LA +V     P   TY  + D 
Sbjct: 264 MV-LKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDG 317



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 99/209 (47%), Gaps = 15/209 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EAL  +  M Q    P+   YN +I+ LC+ G  + A  L+++M   G     +V TY
Sbjct: 351 VEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHH--ANVITY 408

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC-CKTYRI 303
             LI+  CK G           ++ +A  L   M  +G  PD+   N L+ G  CK  R+
Sbjct: 409 NSLINGLCKNG-----------QLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRL 457

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           + A  LF D+  KG  PN  TYN  I  +     +D+A  +  KM++ +   P + ++  
Sbjct: 458 KNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMED-SGCSPNAITFKI 516

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPR 392
           II AL E G   +A   L E++  G + R
Sbjct: 517 IICALLEKGETDKAEKLLCEMIARGLLKR 545



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 12/180 (6%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI  L + G ++ A      M       +V  YN +IN LC+ G  +KA  L+ 
Sbjct: 370 TVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALIN 429

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M+  G +  PD+YT  IL+      G          +R+  A  LF+ +L KG+ P+V 
Sbjct: 430 KMKDQGIQ--PDMYTLNILLHGLLCKG----------KRLKNAQGLFQDLLDKGYHPNVY 477

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN +I G CK   ++ A  L   M   GC PN +T+   I       E DKA +++ +M
Sbjct: 478 TYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETDKAEKLLCEM 537


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 156/344 (45%), Gaps = 61/344 (17%)

Query: 90  IANNVLVLGPAAYRD-PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGN-- 146
           +  N+L+ G  +  D P    +GL          ER +    NEM   EMG+V  + N  
Sbjct: 47  VVYNILIGGICSTEDLPSMEVIGL---------AERAY----NEML--EMGVVLNKVNVC 91

Query: 147 ----------NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196
                       +  ++ +++M  +G   +  +S+ + +I  L     V +A   F  MK
Sbjct: 92  NFTRCLCCIGKFEKAYNVIREMMSKGF--IPDSSTYSKVIGYLCNASKVEKAFQLFQEMK 149

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
           +    PDVY Y  +++  C+VG   +AR   ++M+  G  C P+V TYT LI +Y K   
Sbjct: 150 RNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDG--CAPNVVTYTALIHAYLK--- 204

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM-NK 315
                    R++  AN +F +ML  G VP++V Y  LIDG CK    E+A +++  M N 
Sbjct: 205 --------TRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKND 256

Query: 316 KGCI----------------PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
           K  I                PN VTY + +      +++ +A +++  M +L    P   
Sbjct: 257 KVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETM-SLEGCEPNQI 315

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            Y  +I   C+ G++ EA++   +++  G  P  YTY  + D L
Sbjct: 316 IYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKL 359



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 134/269 (49%), Gaps = 13/269 (4%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
               + V+  +   ++M R  NG      + T L+    + GL+ +A   F  M+Q  C 
Sbjct: 132 LCNASKVEKAFQLFQEMKR--NGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCA 189

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGC 260
           P+V  Y  +I+A  +    ++A  + E M   G  C P++ TYT LI  +CK G  +  C
Sbjct: 190 PNVVTYTALIHAYLKTRKLSRANEIFEMMLSNG--CVPNIVTYTALIDGHCKAGETEKAC 247

Query: 261 RKAIRRR-----IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
           +   R +     I + +  FR++  +   P+VV Y  L+DG CK ++++ A +L + M+ 
Sbjct: 248 QIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSL 307

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRV 374
           +GC PN++ Y++ I  +  V ++D+A E+  KM  L HG  P   +Y+ +I  L +  R+
Sbjct: 308 EGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKM--LGHGCSPNVYTYSSLIDKLFKDKRL 365

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDAL 403
             A   L ++++    P    Y  + D L
Sbjct: 366 DLALKVLTKMLENSCAPNVVIYTEMVDGL 394



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 120/262 (45%), Gaps = 22/262 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRG--NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
             + + VK   D L+ MS  G    +++  + +    KV    G ++EA   F +M    
Sbjct: 289 LCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKV----GKLDEAQEVFTKMLGHG 344

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C P+VY Y+ +I+ L +    + A  +L +M      C P+V  YT ++   CK G    
Sbjct: 345 CSPNVYTYSSLIDKLFKDKRLDLALKVLTKM--LENSCAPNVVIYTEMVDGLCKVG---- 398

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  +  EA  L  +M  KG  P+VV Y  +IDG  K  R++R LEL   M  KGC 
Sbjct: 399 -------KTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCA 451

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN +TY   I +      +D A +++ +M+   +       Y  +I     +   + +  
Sbjct: 452 PNFITYRVLINHCCAAGLLDDAHKLLEEMKQ-TYWPKHIGMYRKVIEGF--SHEFVASLG 508

Query: 380 FLAELVDGGSVPREYTYKLVCD 401
            LAEL + GSVP    YKL+ D
Sbjct: 509 LLAELSEDGSVPILPVYKLLID 530



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 17/215 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+V  Y  +++ LC+     +AR LLE M L G  C P+   Y  LI  +CK G     
Sbjct: 276 EPNVVTYGALVDGLCKAHKVKEARDLLETMSLEG--CEPNQIIYDALIDGFCKVG----- 328

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA  +F  ML  G  P+V  Y+ LID   K  R++ AL++   M +  C P
Sbjct: 329 ------KLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAP 382

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N V Y   +     V + D+A  +M  M+      P   +YT +I    +AGRV    + 
Sbjct: 383 NVVIYTEMVDGLCKVGKTDEAYRLMLMMEE-KGCYPNVVTYTAMIDGFGKAGRVDRCLEL 441

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415
           L  +   G  P   TY+++ +   AA    LLDD 
Sbjct: 442 LQLMTSKGCAPNFITYRVLINHCCAA---GLLDDA 473



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 99/211 (46%), Gaps = 22/211 (10%)

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC +G F KA  ++ +M   GF   PD  TY+ +I   C              ++ +A  
Sbjct: 97  LCCIGKFEKAYNVIREMMSKGF--IPDSSTYSKVIGYLCN-----------ASKVEKAFQ 143

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF+ M   G  PDV  Y  L+D  CK   IE+A   FD+M + GC PN VTY + I  Y 
Sbjct: 144 LFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYL 203

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV-DGGSVPR 392
              ++ +A E+   M + N  VP   +YT +I   C+AG   +A    A +  D   +P 
Sbjct: 204 KTRKLSRANEIFEMMLS-NGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPD 262

Query: 393 EYTYKLVCDALNAAEEPSL-----LDDGLRK 418
              Y  + D+    +EP++     L DGL K
Sbjct: 263 VDIYFRIVDS--ELKEPNVVTYGALVDGLCK 291



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 35/240 (14%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK------ 253
           C P    +N +++A CR G++  A  LL++M + G++  P    Y ILI   C       
Sbjct: 7   CYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQ--PGYVVYNILIGGICSTEDLPS 64

Query: 254 ---YGMQ----------------------TGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
               G+                       T C   I  +  +A ++ R M+ KGF+PD  
Sbjct: 65  MEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCI-GKFEKAYNVIREMMSKGFIPDSS 123

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y+ +I   C   ++E+A +LF +M + G  P+  TY + +  +  V  I++A     +M
Sbjct: 124 TYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEM 183

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           Q  +   P   +YT +IHA  +  ++  A +    ++  G VP   TY  + D    A E
Sbjct: 184 QQ-DGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGE 242



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 97/234 (41%), Gaps = 30/234 (12%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           ++ T  V  L KV    G  +EA      M++  C P+V  Y  +I+   + G  ++   
Sbjct: 385 VIYTEMVDGLCKV----GKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLE 440

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR--------------RRIWEA 271
           LL+ M   G  C P+  TY +LI+  C  G+     K +               R++ E 
Sbjct: 441 LLQLMTSKG--CAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEG 498

Query: 272 -NHLFRLMLF-------KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
            +H F   L         G VP +  Y  LID   K  R+E ALEL ++++         
Sbjct: 499 FSHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQN- 557

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
           TY S I   ++  ++DKA ++   M      VP  S    +I  L   G+  EA
Sbjct: 558 TYVSLIESLTLACKVDKAFKLYSDMTRRGF-VPELSMLVCLIKGLLRVGKWEEA 610


>gi|224111048|ref|XP_002315730.1| predicted protein [Populus trichocarpa]
 gi|222864770|gb|EEF01901.1| predicted protein [Populus trichocarpa]
          Length = 760

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 155/314 (49%), Gaps = 27/314 (8%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARG---NNVKGLWDFLKDMSRRGNGELVTT 169
           + A +F+ WVER     H+  T  ++  +  R    N+ + +   L+DM ++G    +  
Sbjct: 129 DHALQFFRWVERAGLIQHDRETHMKIIQILGRYSMLNHARCI--VLEDMPKKGFE--LDE 184

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
                LI   G+ G+V E++  F +MK+      V +YN +   + R G +  A+    +
Sbjct: 185 DMFVLLIDSYGKAGIVQESVKMFSKMKELGVERSVKSYNALFKVIVRKGRYMMAKRFFNK 244

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M   G    P  +TY +LI  +    +    R A+R         +  M  +G  PDVV 
Sbjct: 245 MLDEGI--GPTRHTYNVLIWGFF---LSMRLRTAVR--------FYEDMKVRGISPDVVT 291

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN +I+G  +  R+E A +LF +M  K   P  ++Y + I+ Y  V+ I+  + ++ +M+
Sbjct: 292 YNTMINGYYRHKRMEEAEKLFAEMKAKDIAPTVISYTTMIKGYFAVDRINDGLRLLEEMK 351

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT--YKLVCDALNAA 406
           ++  G+ P + +YT ++  LC+AG++ EA+D L E+V     P++ +   KL+     A 
Sbjct: 352 SV--GIKPNNVTYTTLLPDLCDAGKMTEAKDILKEMVRRRIAPKDNSIFLKLLNSQCKAG 409

Query: 407 EEPSLLD--DGLRK 418
           +  + +D  DG+ K
Sbjct: 410 DLKAAVDVLDGMIK 423



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 103/240 (42%), Gaps = 32/240 (13%)

Query: 210 VINALCRVGNFNKAR-FLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------ 256
           +I  L R    N AR  +LE M   GF    D++   +LI SY K G+            
Sbjct: 154 IIQILGRYSMLNHARCIVLEDMPKKGFELDEDMFV--LLIDSYGKAGIVQESVKMFSKMK 211

Query: 257 QTGCRKAIRR------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           + G  ++++             R   A   F  ML +G  P    YN LI G   + R+ 
Sbjct: 212 ELGVERSVKSYNALFKVIVRKGRYMMAKRFFNKMLDEGIGPTRHTYNVLIWGFFLSMRLR 271

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A+  ++DM  +G  P+ VTYN+ I  Y     +++A ++  +M+  +   PT  SYT +
Sbjct: 272 TAVRFYEDMKVRGISPDVVTYNTMINGYYRHKRMEEAEKLFAEMKAKDIA-PTVISYTTM 330

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRI 420
           I       R+ +    L E+   G  P   TY      +CDA    E   +L + +R+RI
Sbjct: 331 IKGYFAVDRINDGLRLLEEMKSVGIKPNNVTYTTLLPDLCDAGKMTEAKDILKEMVRRRI 390



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 26/245 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEE---GLVNEALATFYRMKQFRCRPDVYAYNV 209
           D LK+M RR     +     +  +K+L  +   G +  A+     M +     +   Y V
Sbjct: 380 DILKEMVRR----RIAPKDNSIFLKLLNSQCKAGDLKAAVDVLDGMIKLSIPSEAGHYGV 435

Query: 210 VINALCRVGNFNKA-RFLLEQME-----LPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +I   C+   +++A +F+ + +E      P      +   Y  +I   C +G QTG    
Sbjct: 436 LIENFCKAEEYDQAVKFVDKLIENDIILRPQSTLEMESGAYNPVIQYLCSHG-QTG---- 490

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
                 +A  LFR +L KG V D +A+N LI G  K    + A E+   M +KG   +  
Sbjct: 491 ------KAEILFRQLLKKG-VEDPLAFNNLICGHAKEGTPDSAFEILKIMGRKGIPRDAD 543

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
            Y   I  Y    E   A   +  M    H +P SS +  ++ +L E GRV  A   +  
Sbjct: 544 AYRLLIESYLRKGEPADAKTALDSMIEDGH-LPDSSVFRSVMESLYEDGRVQTASRVMKS 602

Query: 384 LVDGG 388
           +V+ G
Sbjct: 603 MVEKG 607



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 92/239 (38%), Gaps = 56/239 (23%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D  A+N +I    + G  + A  +L+ M   G   P D   Y +LI SY + G     + 
Sbjct: 506 DPLAFNNLICGHAKEGTPDSAFEILKIMGRKGI--PRDADAYRLLIESYLRKGEPADAKT 563

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN- 321
           A+             M+  G +PD   +  +++   +  R++ A  +   M +KG   N 
Sbjct: 564 ALDS-----------MIEDGHLPDSSVFRSVMESLYEDGRVQTASRVMKSMVEKGVKENM 612

Query: 322 -------------------------------RVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
                                           V ++S +   S+++E  K I  ++    
Sbjct: 613 DLVAKILEALLMRGHEEEALGRIDLLMSSQCNVNFDSLL---SILSEKGKTIAALKL--- 666

Query: 351 LNHGVPTS-----SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           L+ G+         SY  ++ AL  AG+ L A   L ++++ G V    +Y+ +  +LN
Sbjct: 667 LDFGLQRDCDIDFKSYDKVLDALLAAGKTLNAYSILCKIMEKGGVTSWRSYEDLIKSLN 725


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 134/288 (46%), Gaps = 25/288 (8%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
            RG     L   L+DM RRG    V T ++  L++   +     +A+     M    C P
Sbjct: 178 GRGRTSNALA-VLEDMFRRGCLPDVVTYTI--LLEATCKRSGYKQAMKLLDEMHDKGCAP 234

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D+  YNVV+N +C+ G    A   L+   LP + C P+  +Y I++      G+ T  R 
Sbjct: 235 DIVTYNVVLNGICQEGRVEDAMEFLKN--LPSYGCEPNTVSYNIVLK-----GLFTAER- 286

Query: 263 AIRRRIWE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 WE A  L   M  KG  P+VV +N LI   C+   +E A+E+ + M + GC PN
Sbjct: 287 ------WEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPN 340

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            ++YN  +  +    +I KA+E +  M  ++ G  P   SY  ++ ALC  G V  A + 
Sbjct: 341 SLSYNPLLHAFCKQKKIHKAMEFVELM--VSRGCYPDIVSYNTLLTALCRNGEVDVAIEL 398

Query: 381 LAELVDGGSVPREYTYKLVCDALNAA----EEPSLLDDGLRKRIRDGI 424
           L +L D G  P   +Y  V D L  A    E   LLD+   K ++  I
Sbjct: 399 LHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDI 446



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 128/251 (50%), Gaps = 18/251 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            +++M+ +G    V T ++  LI  L   GLV  A+    +M Q+ C P+  +YN +++A
Sbjct: 293 LMEEMAHKGCPPNVVTFNM--LISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHA 350

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+    +KA   +E M   G  C PD+ +Y  L+++ C+ G            +  A  
Sbjct: 351 FCKQKKIHKAMEFVELMVSRG--CYPDIVSYNTLLTALCRNG-----------EVDVAIE 397

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L   +  KG  P +++YN +IDG  K  + + ALEL D+M  KG  P+ +TY++      
Sbjct: 398 LLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLC 457

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             + I++A+    K+Q++  G+ PT++ Y  I+  LC+      A D  A ++  G +P 
Sbjct: 458 REDRIEEAVRTFCKVQDM--GIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPN 515

Query: 393 EYTYKLVCDAL 403
           E TY ++ + L
Sbjct: 516 ESTYTILVEGL 526



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+ L   G  + ALA    M +  C PDV  Y +++ A C+   + +A  LL++M   G
Sbjct: 172 LIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKG 231

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD+ TY ++++  C+ G           R+ +A    + +   G  P+ V+YN ++
Sbjct: 232 --CAPDIVTYNVVLNGICQEG-----------RVEDAMEFLKNLPSYGCEPNTVSYNIVL 278

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G     R E A +L ++M  KGC PN VT+N  I +      ++ A+E++ +M      
Sbjct: 279 KGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYG-C 337

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P S SY P++HA C+  ++ +A +F+  +V  G  P   +Y  +  AL
Sbjct: 338 TPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTAL 386



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 19/199 (9%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  YN ++   C  G  + AR L+  M +      PD YTY  LI   C  G      
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLVADMPVE-----PDAYTYNTLIRGLCGRG------ 180

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R   A  +   M  +G +PDVV Y  L++  CK    ++A++L D+M+ KGC P+
Sbjct: 181 -----RTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPD 235

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            VTYN  +        ++ A+E ++ +   ++G  P + SY  ++  L  A R  +A   
Sbjct: 236 IVTYNVVLNGICQEGRVEDAMEFLKNLP--SYGCEPNTVSYNIVLKGLFTAERWEDAEKL 293

Query: 381 LAELVDGGSVPREYTYKLV 399
           + E+   G  P   T+ ++
Sbjct: 294 MEEMAHKGCPPNVVTFNML 312



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 92/214 (42%), Gaps = 28/214 (13%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            F +   +    +F++ M  RG    +   S   L+  L   G V+ A+   +++K   C
Sbjct: 350 AFCKQKKIHKAMEFVELMVSRGCYPDIV--SYNTLLTALCRNGEVDVAIELLHQLKDKGC 407

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY-----G 255
            P + +YN VI+ L + G   +A  LL++M   G +  PD+ TY+ + S  C+       
Sbjct: 408 SPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQ--PDIITYSTIASGLCREDRIEEA 465

Query: 256 MQTGCR-------------KAI------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           ++T C+              AI      RR    A  LF  M+  G +P+   Y  L++G
Sbjct: 466 VRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEG 525

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
                 ++ A ELF  +  +G +  ++     I+
Sbjct: 526 LAYEGLVKEARELFAQLCSRGVVNKKLMKKGSIK 559


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 125/273 (45%), Gaps = 50/273 (18%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L      T LI+   +EG V EA + F  +   R   DV  Y+V+I+ L R G  ++A
Sbjct: 560 GVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEA 619

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             +  +++  G    P+ +TY  LIS  CK G            + +A+ L   M  KG 
Sbjct: 620 FGIFSELQEKGLL--PNAFTYNSLISGSCKQG-----------NVDKASQLLEEMCIKGI 666

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR------------- 330
            PD+V YN LIDG CK   IERA  LFDD+  +G  PN VTY + +              
Sbjct: 667 NPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQ 726

Query: 331 ---------------YYSVV-------NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
                           Y+V+        + +KA+++ ++M  L  G  ++ S+  +I   
Sbjct: 727 LLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEM--LEKGFASTVSFNTLIEGY 784

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           C++G++ EA   L E+++   +P   TY  + D
Sbjct: 785 CKSGKLQEANHLLEEMIEKQFIPNHVTYTSLID 817



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 18/279 (6%)

Query: 126 FDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV 185
           F+F  + ++C  +     +GN V+  W     M    +  L    + T +I    + G V
Sbjct: 174 FEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMC--AHKVLPDVYTYTNMISAHCKVGNV 231

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
            +A      M +  C P++  YNV+I  LCR    ++A  L   M   G    PD+YTY 
Sbjct: 232 KDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGL--VPDLYTYD 289

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           ILI+ +C           + +R  EA  +   M+  G  P+ + YN LIDG  +   IE+
Sbjct: 290 ILINGFC-----------MEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQ 338

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPI 364
           A  + D+M   G   N + +N+ +       +++KA+E+M++M  +  GV P S +Y+ +
Sbjct: 339 AFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM--MEKGVEPDSQTYSLL 396

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           I   C    +  A + L E+      P   TY ++ + L
Sbjct: 397 IEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGL 435



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 130/298 (43%), Gaps = 39/298 (13%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R  N++G    L++M    NG        T L+    +EG V E+     RM++    
Sbjct: 435 LCRCGNLQGTNAILREMVM--NGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGIL 492

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------ 255
           PDV+ YN +I   C+     +AR  L  ME+   R  P+ +TY   I  Y K G      
Sbjct: 493 PDVFCYNSLIIGFCKAKRMEEARTYL--MEMLERRLRPNAHTYGAFIDGYSKAGEMEIAD 550

Query: 256 ---------------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                                ++  C++     + EA  +FR +L +  + DV  Y+ LI
Sbjct: 551 RYFNEMLSCGVLPNVGIYTALIEGHCKEG---NVTEAFSVFRFILSRRVLQDVQTYSVLI 607

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLN 352
            G  +  ++  A  +F ++ +KG +PN  TYNS I        +DKA +++ +M  + +N
Sbjct: 608 HGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGIN 667

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
              P   +Y  +I  LC+AG +  A++   ++   G  P   TY  + D    ++ P+
Sbjct: 668 ---PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPT 722



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 93/191 (48%), Gaps = 16/191 (8%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A      MK+ +  P V  Y+V+IN LCR GN      +L +M + G +  P+   YT L
Sbjct: 409 AFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLK--PNAVVYTTL 466

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           ++++ K G           R+ E+  +   M  +G +PDV  YN LI G CK  R+E A 
Sbjct: 467 MTAHAKEG-----------RVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEAR 515

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
               +M ++   PN  TY +FI  YS   E++ A     +M  L+ GV P    YT +I 
Sbjct: 516 TYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEM--LSCGVLPNVGIYTALIE 573

Query: 367 ALCEAGRVLEA 377
             C+ G V EA
Sbjct: 574 GHCKEGNVTEA 584



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 20/223 (8%)

Query: 190 ATFYRMKQFRCR---PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           A F  +++   R   PD + YNV++N  C+   F KA  L ++M   GF       ++  
Sbjct: 723 AAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF---ASTVSFNT 779

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI  YCK G           ++ EANHL   M+ K F+P+ V Y  LID  CK   +  A
Sbjct: 780 LIEGYCKSG-----------KLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEA 828

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
             L+ +M ++  +P   TY S +  Y  +  + +   +  +M  +  G+ P   +Y  +I
Sbjct: 829 KRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM--VAKGIEPDKMTYYVMI 886

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            A C  G V+EA     E++  G       Y  +  AL   EE
Sbjct: 887 DAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEE 929



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 124/277 (44%), Gaps = 56/277 (20%)

Query: 183 GLVNEALATFYRMKQFRCR-----------------------------------PDVYAY 207
           G + EA+  F   K F  R                                   PDVY Y
Sbjct: 159 GFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTY 218

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
             +I+A C+VGN   A+ +L +M   G  C P++ TY ++I   C+            R 
Sbjct: 219 TNMISAHCKVGNVKDAKRVLLEMGEKG--CSPNLVTYNVIIGGLCR-----------ARL 265

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + EA  L R M+ KG VPD+  Y+ LI+G C   R   A  +  +M   G  P  +TYN+
Sbjct: 266 LDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNA 325

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVD 386
            I  +    +I++A  +  +M  +  G+  +   +  +++ +C+AG++ +A + + E+++
Sbjct: 326 LIDGFMRQGDIEQAFRIKDEM--VACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMME 383

Query: 387 GGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKR 419
            G  P   TY L+    C   N A    LLD+ ++KR
Sbjct: 384 KGVEPDSQTYSLLIEGHCRGQNMARAFELLDE-MKKR 419



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 130/327 (39%), Gaps = 66/327 (20%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           NVK     L +M  +G    + T +V  +I  L    L++EA+     M      PD+Y 
Sbjct: 230 NVKDAKRVLLEMGEKGCSPNLVTYNV--IIGGLCRARLLDEAIELKRSMVDKGLVPDLYT 287

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----------M 256
           Y+++IN  C      +A+ +L +M   G +  P+  TY  LI  + + G           
Sbjct: 288 YDILINGFCMEKRSREAKLMLLEMIDVGLK--PEPITYNALIDGFMRQGDIEQAFRIKDE 345

Query: 257 QTGCRKAIRRRIW--------------EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
              C       IW              +A  + + M+ KG  PD   Y+ LI+G C+   
Sbjct: 346 MVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQN 405

Query: 303 IERALELFDDMNKK-----------------------------------GCIPNRVTYNS 327
           + RA EL D+M K+                                   G  PN V Y +
Sbjct: 406 MARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTT 465

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            +  ++    ++++  ++ +M+    G+ P    Y  +I   C+A R+ EAR +L E+++
Sbjct: 466 LMTAHAKEGRVEESRMILERMRE--QGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLE 523

Query: 387 GGSVPREYTYKLVCDALNAAEEPSLLD 413
               P  +TY    D  + A E  + D
Sbjct: 524 RRLRPNAHTYGAFIDGYSKAGEMEIAD 550



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 13/176 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    + G++ EA   +  M++    P    Y  +++    +GN ++   L E+M  
Sbjct: 813 TSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVA 872

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PD  TY ++I +YC+ G            + EA  L   +L KG    V AY+ 
Sbjct: 873 KGIE--PDKMTYYVMIDAYCREG-----------NVMEACKLKDEILVKGMPMSVAAYDA 919

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           LI   CK       L+L +++ + G      T +   R + +   +D+A E++R M
Sbjct: 920 LIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSM 975



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 105/252 (41%), Gaps = 21/252 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D  ++M  +G     +T S   LI+   + G + EA      M + +  P+   Y  +I+
Sbjct: 761 DLFQEMLEKG---FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLID 817

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             C+ G   +A+ L   +E+      P   TYT L+  Y   G            + E +
Sbjct: 818 HNCKAGMMGEAKRLW--LEMQERNVMPTAKTYTSLLHGYHNIG-----------NMSEVS 864

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            LF  M+ KG  PD + Y  +ID  C+   +  A +L D++  KG   +   Y++ I+  
Sbjct: 865 ALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQAL 924

Query: 333 SVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
               E  + ++++ ++       G+PT S    I      AG + EA + L  +V  G V
Sbjct: 925 CKKEEFFEVLKLLNEIGESGFRLGLPTCSV---IARGFQIAGNMDEAAEVLRSMVKFGWV 981

Query: 391 PREYTYKLVCDA 402
               +   + D 
Sbjct: 982 SNTTSLGDLVDG 993


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 118/239 (49%), Gaps = 17/239 (7%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
            AL   + M        V  Y  +I+ LC+ G+ + A+ LL++M   G  C P+V TYT 
Sbjct: 28  HALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAG--CAPNVVTYTA 85

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI   CK            RR  +A    + ML  G  PD+V YN LI G C   R++ A
Sbjct: 86  LIDGLCK-----------ARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDA 134

Query: 307 -LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPI 364
            L L + M + G IP+ VTYN+FI       ++DK +EM+ +M     G+ P   ++  I
Sbjct: 135 GLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDR--GGISPDVVTFCSI 192

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           I  LC+A R+ +A      +++ G VP   TY ++ D L+ A     +++ L   ++ G
Sbjct: 193 ISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSG 251



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 128/297 (43%), Gaps = 50/297 (16%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +  ++      L+ M+  G    V T   T LI  L +    ++A+ T  RM +  C 
Sbjct: 55  LCKSGDLDAAQALLQKMADAGCAPNVVT--YTALIDGLCKARRPHDAIQTVKRMLRSGCE 112

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  YN +I+ LC     + A  +L+++ +   R P DV TY   IS  CK G      
Sbjct: 113 PDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIP-DVVTYNTFISGLCKAG------ 165

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ +   +   M   G  PDVV +  +I G CK  RI+ A ++F  M ++GC+P+
Sbjct: 166 -----KLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPD 220

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL------------- 368
            +TY+  +   S  N +D   E++  M    H    S++Y P+IHAL             
Sbjct: 221 SLTYSIMLDNLSRANRLDTVEEVLEHMVKSGH-YALSATYAPLIHALIRAGDIESASWAY 279

Query: 369 ----------------------CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                                 C +G+   A++ L  +++ GS+P   +Y  V D L
Sbjct: 280 EQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGL 336



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 17/244 (6%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
            NG   +  + T LI  L + G ++ A A   +M    C P+V  Y  +I+ LC+    +
Sbjct: 38  ANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPH 97

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR-LMLF 280
            A   +++M   G  C PD+ TY  LI   C           +  R+ +A  + + LM+ 
Sbjct: 98  DAIQTVKRMLRSG--CEPDLVTYNSLIHGLC-----------MANRMDDAGLVLQELMIE 144

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G +PDVV YN  I G CK  ++++ LE+ ++M++ G  P+ VT+ S I      N ID 
Sbjct: 145 SGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDD 204

Query: 341 AIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A ++ + M  L  G VP S +Y+ ++  L  A R+    + L  +V  G      TY  +
Sbjct: 205 AFQVFKGM--LERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPL 262

Query: 400 CDAL 403
             AL
Sbjct: 263 IHAL 266



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 99/217 (45%), Gaps = 16/217 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           R D   YN +I  LC+      A  LL  M   G+     V TYT LI   CK G     
Sbjct: 7   RLDAAIYNTLIAGLCKARKPRHALELLHVMAANGY--DASVVTYTTLIDGLCKSG----- 59

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  +  A  L + M   G  P+VV Y  LIDG CK  R   A++    M + GC P
Sbjct: 60  ------DLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEP 113

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + VTYNS I    + N +D A  +++++   +  +P   +Y   I  LC+AG++ +  + 
Sbjct: 114 DLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEM 173

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           L E+  GG  P   T+   C  ++   + + +DD  +
Sbjct: 174 LEEMDRGGISPDVVTF---CSIISGLCKANRIDDAFQ 207



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 17/210 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
            +R N +  + + L+ M + G+  L  T +   LI  L   G +  A   + +  +  C 
Sbjct: 231 LSRANRLDTVEEVLEHMVKSGHYALSATYAP--LIHALIRAGDIESASWAYEQAMEAGCV 288

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            +VY +N  I ALCR G F  A+ +L  M   G    P++ +Y  +I   CK G      
Sbjct: 289 MEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSL--PNLLSYNFVIDGLCKSG------ 340

Query: 262 KAIRRRIWEANHLFRLMLFKGFV-PDVVAYNCLIDGCCKTYRIERALELFDDMNKKG-CI 319
                 + +A  L R ML  G   PDV+ +N LI G CK  R+ +A +L  +M  K  C+
Sbjct: 341 -----NVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICV 395

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           P+ VTYN+ I   S    + +A  ++ +MQ
Sbjct: 396 PDVVTYNTMIDGQSKFGSLKQAKLLLEEMQ 425



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 19/256 (7%)

Query: 149 KGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           KGL + L++M R G + ++VT  S+   I  L +   +++A   F  M +  C PD   Y
Sbjct: 169 KGL-EMLEEMDRGGISPDVVTFCSI---ISGLCKANRIDDAFQVFKGMLERGCVPDSLTY 224

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           +++++ L R    +    +LE M   G        TY  LI +  + G            
Sbjct: 225 SIMLDNLSRANRLDTVEEVLEHMVKSGHYALS--ATYAPLIHALIRAG-----------D 271

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           I  A+  +   +  G V +V  +N  I   C++ +   A  +   M + G +PN ++YN 
Sbjct: 272 IESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNF 331

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL-VD 386
            I        +D A ++ RKM +     P    +  +I   C+AGR+ +A+  L E+   
Sbjct: 332 VIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAK 391

Query: 387 GGSVPREYTYKLVCDA 402
              VP   TY  + D 
Sbjct: 392 NICVPDVVTYNTMIDG 407



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 13/117 (11%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++ +YN VI+ LC+ GN + A  L  +M   G  C PDV  +  LIS +CK G      
Sbjct: 324 PNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGC-CKPDVIFFNTLISGFCKAG------ 376

Query: 262 KAIRRRIWEANHLFRLMLFKGF-VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                R+ +A  L + M  K   VPDVV YN +IDG  K   +++A  L ++M   G
Sbjct: 377 -----RLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 1/119 (0%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M  + F  D   YN LI G CK  +   ALEL   M   G   + VTY + I       +
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +D A  +++KM +     P   +YT +I  LC+A R  +A   +  ++  G  P   TY
Sbjct: 61  LDAAQALLQKMADAGC-APNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTY 118


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 172/391 (43%), Gaps = 45/391 (11%)

Query: 20  PLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRS--IGRQTGFRHRTP 77
           P+ LK  P ++    +  +  + F+++ V  V + + +F  + P+     +++G   R+ 
Sbjct: 77  PIHLKTTPHES----AHDRDADEFSVD-VEKVYRILRKFHTRVPKLELALQESGVIMRSG 131

Query: 78  LRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKE 137
           L +R+L +            G A            N    F+ W  +   + H+    K 
Sbjct: 132 LPERVLSR-----------CGDAG-----------NLGYRFFVWASKQPGYRHSYEVYKA 169

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M     +      +W  +++M R+ N  ++T      L++      +V +A+     M +
Sbjct: 170 MIKTLGKMRQFGAVWALIEEM-RKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPK 228

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
           + C PD Y +  +++ALC+ G+  +A  L E M +   R  P++  +T L+  +C+ G  
Sbjct: 229 YGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRV---RFNPNLRHFTSLLYGWCREG-- 283

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    +I EA H+   +   GF PD+V YN L+ G  +  ++  A +L  +M K  
Sbjct: 284 ---------KIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVN 334

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
           C PN  ++   I+ +    ++D+A+ +  +MQ          +YT +I   C+ G   +A
Sbjct: 335 CGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADV-VTYTTLISGFCKWGNTDKA 393

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            + L +++  G  P + +Y  +  A    EE
Sbjct: 394 YEILDDMIQKGHDPSQLSYLCIMMAHEKKEE 424



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 20/238 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+    + G + +A      MK+  C P+  ++ ++I + C+    ++A  +  +M+  G
Sbjct: 310 LLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSG 369

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  DV TYT LIS +CK+G              +A  +   M+ KG  P  ++Y C++
Sbjct: 370 --CEADVVTYTTLISGFCKWGNTD-----------KAYEILDDMIQKGHDPSQLSYLCIM 416

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ--NLN 352
               K   +E  +EL ++M K GC+P+   YN+ IR    + ++ +A+ +  +MQ   LN
Sbjct: 417 MAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLN 476

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG--SVPREYTYKLVCDALNAAEE 408
            G+ T   Y  ++H     G ++EA D+  E+V+ G  S P+  T K + +AL  AE+
Sbjct: 477 PGLDT---YILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEK 531



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 17/259 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
              +  +VK      +DM  R N  L      T L+     EG + EA     ++K+   
Sbjct: 244 ALCKNGSVKEAASLFEDMRVRFNPNL---RHFTSLLYGWCREGKIMEAKHVLVQIKEAGF 300

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD+  YN ++    + G    A  LL +M+     C P+  ++TILI S+CK       
Sbjct: 301 EPDIVVYNNLLGGYAQAGKMRDAFDLLAEMK--KVNCGPNAASFTILIQSFCK------- 351

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA  +F  M   G   DVV Y  LI G CK    ++A E+ DDM +KG  P
Sbjct: 352 ----TEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDP 407

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           ++++Y   +  +    E+++ +E++ +M+ +   VP  + Y  +I  +C+ G + EA   
Sbjct: 408 SQLSYLCIMMAHEKKEELEECMELIEEMRKIG-CVPDLNIYNTMIRLVCKLGDLKEAVRL 466

Query: 381 LAELVDGGSVPREYTYKLV 399
             E+  GG  P   TY L+
Sbjct: 467 WGEMQAGGLNPGLDTYILM 485


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 172/391 (43%), Gaps = 45/391 (11%)

Query: 20  PLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRS--IGRQTGFRHRTP 77
           P+ LK  P ++    +  +  + F+++ V  V + + +F  + P+     +++G   R+ 
Sbjct: 54  PIHLKTTPHES----AHDRDADEFSVD-VEKVYRILRKFHTRVPKLELALQESGVIMRSG 108

Query: 78  LRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKE 137
           L +R+L +            G A            N    F+ W  +   + H+    K 
Sbjct: 109 LPERVLSR-----------CGDAG-----------NLGYRFFVWASKQPGYRHSYEVYKA 146

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M     +      +W  +++M R+ N  ++T      L++      +V +A+     M +
Sbjct: 147 MIKTLGKMRQFGAVWALIEEM-RKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPK 205

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
           + C PD Y +  +++ALC+ G+  +A  L E M +   R  P++  +T L+  +C+ G  
Sbjct: 206 YGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRV---RFNPNLRHFTSLLYGWCREG-- 260

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    +I EA H+   +   GF PD+V YN L+ G  +  ++  A +L  +M K  
Sbjct: 261 ---------KIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVN 311

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
           C PN  ++   I+ +    ++D+A+ +  +MQ          +YT +I   C+ G   +A
Sbjct: 312 CGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADV-VTYTTLISGFCKWGNTDKA 370

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            + L +++  G  P + +Y  +  A    EE
Sbjct: 371 YEILDDMIQKGHDPSQLSYLCIMMAHEKKEE 401



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 20/238 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+    + G + +A      MK+  C P+  ++ ++I + C+    ++A  +  +M+  G
Sbjct: 287 LLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSG 346

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  DV TYT LIS +CK+G              +A  +   M+ KG  P  ++Y C++
Sbjct: 347 --CEADVVTYTTLISGFCKWGNTD-----------KAYEILDDMIQKGHDPSQLSYLCIM 393

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ--NLN 352
               K   +E  +EL ++M K GC+P+   YN+ IR    + ++ +A+ +  +MQ   LN
Sbjct: 394 MAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLN 453

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG--SVPREYTYKLVCDALNAAEE 408
            G+ T   Y  ++H     G ++EA D+  E+V+ G  S P+  T K + +AL  AE+
Sbjct: 454 PGLDT---YILMVHGFLSQGCLVEACDYFKEMVERGLLSAPQYGTLKELTNALLRAEK 508



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 17/259 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
              +  +VK      +DM  R N  L      T L+     EG + EA     ++K+   
Sbjct: 221 ALCKNGSVKEAASLFEDMRVRFNPNL---RHFTSLLYGWCREGKIMEAKHVLVQIKEAGF 277

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD+  YN ++    + G    A  LL +M+     C P+  ++TILI S+CK       
Sbjct: 278 EPDIVVYNNLLGGYAQAGKMRDAFDLLAEMK--KVNCGPNAASFTILIQSFCK------- 328

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA  +F  M   G   DVV Y  LI G CK    ++A E+ DDM +KG  P
Sbjct: 329 ----TEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDP 384

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           ++++Y   +  +    E+++ +E++ +M+ +   VP  + Y  +I  +C+ G + EA   
Sbjct: 385 SQLSYLCIMMAHEKKEELEECMELIEEMRKIG-CVPDLNIYNTMIRLVCKLGDLKEAVRL 443

Query: 381 LAELVDGGSVPREYTYKLV 399
             E+  GG  P   TY L+
Sbjct: 444 WGEMQAGGLNPGLDTYILM 462


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 15/232 (6%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           V   + T L+K L  +   ++A+     RM Q  C P+V++YN+++  LC      +A  
Sbjct: 124 VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALE 183

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           LL+ M   G  CPPDV +YT +I+ + K G            + +A   +  ML +G +P
Sbjct: 184 LLQMMPDDGGDCPPDVVSYTTVINGFFKEG-----------DLDKAYGTYHEMLDRGILP 232

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           +VV Y+ +I   CK   +++A+E+   M K G +PN  TYNS +  Y    +  +AI  +
Sbjct: 233 NVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292

Query: 346 RKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +KM   + GV P   +Y  ++  LC+ GR  EAR     +   G  P   TY
Sbjct: 293 KKMH--SDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 137/279 (49%), Gaps = 23/279 (8%)

Query: 141 VFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
            +A+   V         M ++G N + VT  +V   I +L + G V +A+  F +M   R
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV---IGILCKSGRVEDAMRYFEQMIDER 439

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             P    YN +I++LC    ++KA+ L+ +M   G  C   ++ +  +I S+CK G    
Sbjct: 440 LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI-CLDTIF-FNSIIDSHCKEG---- 493

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  R+ E+  LF LM+  G  PD++ Y+ LIDG C   +++ A +L   M   G  
Sbjct: 494 -------RVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+ VTYN+ I  Y  ++ ++ A+ + R+M+  + GV P   +Y  I+  L +  R   A+
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFREME--SSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           +    + + G+     TY ++   L+   + +L D+ LR
Sbjct: 605 ELYVGITESGTQLELSTYNII---LHGLCKNNLTDEALR 640



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 105/223 (47%), Gaps = 14/223 (6%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG V E+   F  M +   +PD+  Y+ +I+  C  G  ++A  LL  M   G +  PD
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK--PD 548

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
             TY  LI+ YCK             R+ +A  LFR M   G  PD++ YN ++ G  +T
Sbjct: 549 CVTYNTLINGYCKI-----------SRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R   A EL+  + + G      TYN  +      N  D+A+ M + +   +  + T  +
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLET-RT 656

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  +I AL + GR  EA+D  A L   G VP   TY L+ + L
Sbjct: 657 FNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 29/247 (11%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
             G   EA+    +M      PDV  YN +++ LC+ G   +AR + + M   G +  P+
Sbjct: 281 SSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLK--PE 338

Query: 241 VYTYTILISSYCKYG------------MQTG------------CRKAIRRRIWEANHLFR 276
           + TY  L+  Y   G            ++ G            C  A + ++ +A  +F 
Sbjct: 339 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFS 398

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M  +G  PD V Y  +I   CK+ R+E A+  F+ M  +   P  + YNS I    + +
Sbjct: 399 KMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFD 458

Query: 337 EIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
           + DKA E++ +M  L+ G+   +  +  II + C+ GRV+E+      +V  G  P   T
Sbjct: 459 KWDKAKELILEM--LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIIT 516

Query: 396 YKLVCDA 402
           Y  + D 
Sbjct: 517 YSTLIDG 523



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 201 RPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           R D  A+  ++  LC     + A   +L +M   G  C P+V++Y IL+   C       
Sbjct: 123 RVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLG--CIPNVFSYNILLKGLCD------ 174

Query: 260 CRKAIRRRIWEANHLFRLMLFKGF--VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                  R  EA  L ++M   G    PDVV+Y  +I+G  K   +++A   + +M  +G
Sbjct: 175 -----ENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRG 229

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
            +PN VTY+S I        +DKA+E++  M   N  +P   +Y  I+H  C +G+  EA
Sbjct: 230 ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK-NGVMPNCRTYNSIVHGYCSSGQPKEA 288

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
             FL ++   G  P   TY  + D L
Sbjct: 289 IGFLKKMHSDGVEPDVVTYNSLMDYL 314



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 17/227 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  Y ++I + C  G  +     L  +   GFR   D   +T L+   C         
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRV--DAIAFTPLLKGLC--------- 137

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG--CI 319
            A +R     + + R M   G +P+V +YN L+ G C   R + ALEL   M   G  C 
Sbjct: 138 -ADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCP 196

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+ V+Y + I  +    ++DKA     +M  L+ G+ P   +Y+ II ALC+A  + +A 
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEM--LDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           + L  +V  G +P   TY  +     ++ +P      L+K   DG+E
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVE 301



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 72/218 (33%), Gaps = 61/218 (27%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++EA      M     +PD   YN +IN  C++     A  L  +ME  G    PD+ 
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV--SPDII 585

Query: 243 T-----------------------------------YTILISSYCKYGM--------QTG 259
           T                                   Y I++   CK  +        Q  
Sbjct: 586 TYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645

Query: 260 CRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           C   ++                 R  EA  LF  +   G VPDV  Y+ + +   +   +
Sbjct: 646 CLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLL 705

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           E   +LF  M + GC  N    NS +R      +I +A
Sbjct: 706 EELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRA 743


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L ++ LV+EA   +  M      PDV  Y+++++  C VG  N+A  LL +M L  
Sbjct: 204 IIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLEN 263

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD+YTYTIL+ + CK G           ++ EA ++  +M+      DVV Y+ L+
Sbjct: 264 IN--PDIYTYTILVDALCKEG-----------KVKEAENVLAVMVKACVNLDVVVYSTLM 310

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG C    +  A  +F  M + G  P+   Y+  I     +  +D+A+ +  ++   N  
Sbjct: 311 DGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNM- 369

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           VP + +YT +I  LC++GR+    D   E++D G  P   TY  + DAL
Sbjct: 370 VPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDAL 418



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 123/252 (48%), Gaps = 19/252 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+  L +EG V EA      M +     DV  Y+ +++  C V   N A+ +   M  
Sbjct: 272 TILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQ 331

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PDV+ Y+I+I+  CK            +R+ EA +LF  +  K  VPD V Y  
Sbjct: 332 MGV--TPDVHCYSIMINGLCKI-----------KRVDEALNLFEEIHQKNMVPDTVTYTS 378

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LID  CK+ RI    +LFD+M  +G  P+ +TYN+ I        +D+AI +  KM++  
Sbjct: 379 LIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKD-Q 437

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
              P   ++T ++  LC+ GR+  A +F  +L+  G      TY ++   +N   +  LL
Sbjct: 438 AIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVM---INGLCKEGLL 494

Query: 413 DD--GLRKRIRD 422
           D+   L+ R+ D
Sbjct: 495 DEALALQSRMED 506



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 114/240 (47%), Gaps = 14/240 (5%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           VN A   FY M Q    PDV+ Y+++IN LC++   ++A  L E++        PD  TY
Sbjct: 319 VNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNM--VPDTVTY 376

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T LI   CK G           RI     LF  ML +G  PDV+ YN LID  CK   ++
Sbjct: 377 TSLIDCLCKSG-----------RISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLD 425

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           RA+ LF+ M  +   PN  T+   +     V  +  A+E  + +    + +    +YT +
Sbjct: 426 RAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCL-NVRTYTVM 484

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           I+ LC+ G + EA    + + D G +    T++++  A    +E    +  +R+ I  G+
Sbjct: 485 INGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGL 544



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 13/180 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + T LI  L + G ++     F  M      PDV  YN +I+ALC+ G+ ++A  L  
Sbjct: 373 TVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFN 432

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M+    R  P+VYT+TIL+   CK G           R+  A   F+ +L KG+  +V 
Sbjct: 433 KMKDQAIR--PNVYTFTILLDGLCKVG-----------RLKNALEFFQDLLTKGYCLNVR 479

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  +I+G CK   ++ AL L   M   GCI + VT+   IR +   +E DKA +++R+M
Sbjct: 480 TYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREM 539



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 111/221 (50%), Gaps = 26/221 (11%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           ++  +I      G V  A +   ++ +   +P+    N ++  LC  G   +A    +++
Sbjct: 95  TLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKV 154

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR--RRI--WEANHLFRLMLFKGFVPD 286
              GFR      +Y ILI+  CK G     R AIR  RRI  W               P+
Sbjct: 155 LAQGFRLSG--ISYGILINGVCKIGET---RAAIRLLRRIERWSIR------------PN 197

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           VV Y+ +ID  CK   ++ A +L+ +M  KG  P+ VTY+  +  + +V ++++AI+++ 
Sbjct: 198 VVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLN 257

Query: 347 KM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           +M  +N+N   P   +YT ++ ALC+ G+V EA + LA +V
Sbjct: 258 EMVLENIN---PDIYTYTILVDALCKEGKVKEAENVLAVMV 295



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++A++ F  M      P  + +N ++ +L  V  +  A  L +QMEL      PD +T  
Sbjct: 40  DDAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELS--EVEPDYFTLN 97

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           I+I+ +C +G        + +           +L  G+ P+ +  N L+ G C   +++ 
Sbjct: 98  IIINCFCHFGQVVLAFSGVSK-----------ILKLGYQPNTITLNTLMKGLCLEGKVKE 146

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           AL   D +  +G   + ++Y   I     + E   AI ++R+++  +   P    Y+ II
Sbjct: 147 ALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIR-PNVVIYSMII 205

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             LC+   V EA D   E+V  G  P   TY ++
Sbjct: 206 DRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSIL 239


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 121/249 (48%), Gaps = 20/249 (8%)

Query: 165 ELVTTSS-------VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           E++T+SS        T LI    + G + +A+     M+  +C P+V  Y+ +++ LC+ 
Sbjct: 173 EILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKA 232

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G+ ++A  L  +M   G  C P+V TYT LI   C              ++  A  L   
Sbjct: 233 GDLDQALDLFRRMTSKG--CVPNVVTYTTLIHGLCAA-----------HKVDAARLLMDE 279

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M      PD V+YN L+DG C+  RIE A +LF +M  K C+P+R+TY   +R +   + 
Sbjct: 280 MTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASR 339

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           +++A  ++  M+      P   +Y+ ++     A R +EA +F+ E++     P   TY 
Sbjct: 340 LEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYS 399

Query: 398 LVCDALNAA 406
            + D L  A
Sbjct: 400 SLIDGLCKA 408



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 128/258 (49%), Gaps = 16/258 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T +I    +   + +ALA F +M++F   P+   YNVV+N LC+    +KA  +L
Sbjct: 6   TVVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAYEVL 64

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFK-GFVP 285
           ++M   G    PD+ TY+ +I+ +CK G M   C             + R M+ + G  P
Sbjct: 65  KEMR-DGKSVAPDLVTYSTVINGFCKQGEMDRAC------------EILREMVTRDGIAP 111

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           DVV Y  ++DG C+  +++RA E+  +M  KG  P++ T+++ I  +    ++D+A+++ 
Sbjct: 112 DVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLY 171

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           +++   +   P   +YT +I   C++G + +A   L  +     VP   TY  +   L  
Sbjct: 172 KEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCK 231

Query: 406 AEEPSLLDDGLRKRIRDG 423
           A +     D  R+    G
Sbjct: 232 AGDLDQALDLFRRMTSKG 249



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 15/193 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + EA   F  M    C PD   Y  ++   C      +ARFLLE M+       PDV 
Sbjct: 303 GRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA-GIDPDVV 361

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY+I+++ Y +            +R  EA    + M+ +   P+ V Y+ LIDG CK  R
Sbjct: 362 TYSIVVAGYSRA-----------KRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGR 410

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           ++ A+E+  +M  K   P+  T+NS I     + ++D+A +++  M    HG+ P   +Y
Sbjct: 411 VDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMA--AHGLEPGMVTY 468

Query: 362 TPIIHALCEAGRV 374
           T ++      GR+
Sbjct: 469 TTLLEGFSRTGRM 481



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 15/164 (9%)

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PDVVAYNCL 293
             C P V T+TI+I  +CK             ++ +A   F  M  + FV P+   YN +
Sbjct: 1   MECQPTVVTWTIIIDGFCKA-----------NQLKQALACFEKM--REFVAPNERTYNVV 47

Query: 294 IDGCCKTYRIERALELFDDM-NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           ++G CK     +A E+  +M + K   P+ VTY++ I  +    E+D+A E++R+M   +
Sbjct: 48  VNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRD 107

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
              P   +YT ++  LC  G++  A + + E+   G  P ++T+
Sbjct: 108 GIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTF 151



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P VV +  +IDG CK  ++++AL  F+ M ++   PN  TYN  +          KA E+
Sbjct: 5   PTVVTWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYEV 63

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD-GGSVPREYTYKLVCDAL 403
           +++M++     P   +Y+ +I+  C+ G +  A + L E+V   G  P   TY  V D L
Sbjct: 64  LKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGL 123


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 157/340 (46%), Gaps = 38/340 (11%)

Query: 119 YHWVERFFDFFHNEMTCKEMG-IVFARGNNVKGLWDF---------LKDMSRRGNGELVT 168
           Y  V    D F + M  K++   +F   + ++GL +F         L +M+       V 
Sbjct: 128 YRRVNEALDIF-SYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVV 186

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +V  L+    +EG V  A      M +    PDV  YN ++          +AR L +
Sbjct: 187 TFNV--LVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFD 244

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M   G  C PDV++Y+ILI+ YCK            +RI EA  LF  M+ +G  P+ V
Sbjct: 245 VMITKG--CKPDVFSYSILINGYCK-----------AKRIDEAKQLFNEMIHQGSTPNNV 291

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           +YN LI G C+  R+  A +LF +M+  G +PN  TY   +  +     + KA  + R M
Sbjct: 292 SYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAM 351

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           Q+  +  P    Y  +++A+C++G + +AR+  +EL   G  P    Y  +   +N   +
Sbjct: 352 QS-TYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTI---INGLCK 407

Query: 409 PSLLDDGL---RKRIRDGI---EYRFRQVMKVKPIMKHKE 442
             LLD+ L   R    DG    E+ +  +  ++  ++HK+
Sbjct: 408 EGLLDEALEAFRNMEDDGCPPDEFSYNVI--IRGFLQHKD 445



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 121/264 (45%), Gaps = 35/264 (13%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LI  LG+ G   +A+  F  M    C+PD Y Y  +IN LC++G    A  L 
Sbjct: 44  TIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLF 103

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG---------------------------MQTGC 260
           ++ME  G  C  +V TY+ LI S CKY                            +Q  C
Sbjct: 104 KKMEEAG--CQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLC 161

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
             +   R  EA+ L   M     +P+VV +N L+D  CK  ++  A  +   M + G  P
Sbjct: 162 NFS---RWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEP 218

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
           + VTYNS +  YS+  E+ +A ++   M  +  G  P   SY+ +I+  C+A R+ EA+ 
Sbjct: 219 DVVTYNSLMYGYSMWTEVVEARKLFDVM--ITKGCKPDVFSYSILINGYCKAKRIDEAKQ 276

Query: 380 FLAELVDGGSVPREYTYKLVCDAL 403
              E++  GS P   +Y  +   L
Sbjct: 277 LFNEMIHQGSTPNNVSYNTLIHGL 300



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 114/274 (41%), Gaps = 64/274 (23%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
             K M   G    V T S   LI  L +   VNEAL  F  MK     P ++ Y  +I  
Sbjct: 102 LFKKMEEAGCQLNVVTYST--LIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQG 159

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------- 266
           LC    + +A  LL +M        P+V T+ +L+ ++CK G        ++        
Sbjct: 160 LCNFSRWKEASALLNEM--TSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVE 217

Query: 267 -------------RIW----EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
                         +W    EA  LF +M+ KG  PDV +Y+ LI+G CK  RI+ A +L
Sbjct: 218 PDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQL 277

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
           F++M  +G  PN V+YN+                                    +IH LC
Sbjct: 278 FNEMIHQGSTPNNVSYNT------------------------------------LIHGLC 301

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + GR+ EA+D    +   G++P  YTY ++ D  
Sbjct: 302 QLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGF 335



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 107/236 (45%), Gaps = 18/236 (7%)

Query: 165 ELVTTSSVTC----LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           EL   S  TC    LI    +   V+   +   +  +   +P +  +  +IN L +VG F
Sbjct: 2   ELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKF 61

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            +A  L + M   G  C PD YTYT +I+  CK G +T     + +++ EA         
Sbjct: 62  AQAVELFDDMVARG--CQPDDYTYTTIINGLCKIG-ETALAAGLFKKMEEA--------- 109

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G   +VV Y+ LI   CK  R+  AL++F  M  K   P   TY S I+     +   +
Sbjct: 110 -GCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKE 168

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           A  ++ +M +LN  +P   ++  ++   C+ G+VL A   L  + + G  P   TY
Sbjct: 169 ASALLNEMTSLNI-MPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTY 223



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 13/180 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L + G + EA   F  M      P++Y Y ++++  C+ G   KA  L   M
Sbjct: 292 SYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAM 351

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +    +  P++  Y IL+++ CK G            + +A  LF  +   G  P+V  Y
Sbjct: 352 QSTYLK--PNLVMYNILVNAMCKSG-----------NLKDARELFSELFVIGLQPNVQIY 398

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             +I+G CK   ++ ALE F +M   GC P+  +YN  IR +    +  +A+ ++ +M++
Sbjct: 399 TTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRD 458



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 15/172 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D  K+M   GN   + T ++  L+    ++G + +A   F  M+    +P++  YN+++N
Sbjct: 311 DLFKNMHTNGNLPNLYTYAI--LLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVN 368

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           A+C+ GN   AR L  ++ + G +  P+V  YT +I+  CK G+           + EA 
Sbjct: 369 AMCKSGNLKDARELFSELFVIGLQ--PNVQIYTTIINGLCKEGL-----------LDEAL 415

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             FR M   G  PD  +YN +I G  +     RA+ L  +M  +G I +  T
Sbjct: 416 EAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 18/189 (9%)

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           MEL G    P+  T  ILI+ +C+            +R+     +    +  G  P +V 
Sbjct: 1   MELAGL--SPNTCTLNILINCFCQL-----------QRVDLGFSVLAKGIKLGLQPTIVT 47

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           +  LI+G  K  +  +A+ELFDDM  +GC P+  TY + I     + E   A  + +KM+
Sbjct: 48  FTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKME 107

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNA 405
                +    +Y+ +IH+LC+  RV EA D  + +      P  +TY    + +C+    
Sbjct: 108 EAGCQLNV-VTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRW 166

Query: 406 AEEPSLLDD 414
            E  +LL++
Sbjct: 167 KEASALLNE 175


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 122/249 (48%), Gaps = 25/249 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L + G   +A      M +  C+P  + +N++I+  C+VG  + A  L + M   G
Sbjct: 213 LMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRG 272

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD+YTY I+IS  C+             RI +A  L   M   G  PDVV YN ++
Sbjct: 273 --CLPDIYTYNIMISGACR-----------ANRIDDARQLLERMTEAGCPPDVVTYNSIV 319

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G CK  +++ A E+++ +   G   + VT ++ I        +D A +++R+M+  N  
Sbjct: 320 SGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMER-NGS 378

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
            P   +YT +IH  C+A ++ ++  F +E++D G VP   TY +V D L  +        
Sbjct: 379 APDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKS-------- 430

Query: 415 GLRKRIRDG 423
               R+RDG
Sbjct: 431 ---ARVRDG 436



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 113/215 (52%), Gaps = 16/215 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I +  + G ++ A   F  M    C PD+Y YN++I+  CR    + AR LLE+M   G
Sbjct: 248 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 307

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             CPPDV TY  ++S  CK             ++ EA  ++ ++   G+  DVV  + LI
Sbjct: 308 --CPPDVVTYNSIVSGLCK-----------ASQVDEAYEVYEVLRNGGYFLDVVTCSTLI 354

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+ R++ A +L  +M + G  P+ V Y   I  +   +++DK++    +M  L+ G
Sbjct: 355 DGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEM--LDKG 412

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            VPT  +Y+ +I  LC++ RV +    L  +++ G
Sbjct: 413 CVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERG 447



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 135/309 (43%), Gaps = 39/309 (12%)

Query: 148 VKGLWD---------FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
           +KGL D           +DM R     ++T    T L+  L +   +++A      M + 
Sbjct: 75  IKGLCDNGRVDSALVHYRDMQRHCAPSVIT---YTILVDALCKSARISDASLILEDMIEA 131

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG--- 255
            C P+V  YN +IN  C++GN ++A  L  QM      C PDV+TY ILI  YCK     
Sbjct: 132 GCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS--CSPDVFTYNILIDGYCKQERPQ 189

Query: 256 ---------MQTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                    ++ GC                  +  +A +L ++ML +   P    +N +I
Sbjct: 190 DGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMI 249

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK  +++ A ELF  M  +GC+P+  TYN  I      N ID A +++ +M      
Sbjct: 250 DMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCP 309

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
            P   +Y  I+  LC+A +V EA +    L +GG      T   + D L  +      + 
Sbjct: 310 -PDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEK 368

Query: 415 GLRKRIRDG 423
            LR+  R+G
Sbjct: 369 LLREMERNG 377



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 101/230 (43%), Gaps = 15/230 (6%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CL+     +    EA   F       C PD   Y+ +IN  C+  +F +A  LL++ME  
Sbjct: 3   CLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKR 62

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P    Y  +I   C  G           R+  A   +R M  +   P V+ Y  L
Sbjct: 63  GI--VPHNAVYNTIIKGLCDNG-----------RVDSALVHYRDMQ-RHCAPSVITYTIL 108

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +D  CK+ RI  A  + +DM + GC PN VTYN+ I  +  +  +D+A+ +  +M   N 
Sbjct: 109 VDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLE-NS 167

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P   +Y  +I   C+  R  +    L E+V  G  P   TY  + D+L
Sbjct: 168 CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSL 217



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 37/199 (18%)

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           +++  EA  LF+  L     PD + Y+ LI+G CK    ++A  L D+M K+G +P+   
Sbjct: 11  KKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAV 70

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YN+ I+       +D A+   R MQ   H  P+  +YT ++ ALC++ R+ +A   L ++
Sbjct: 71  YNTIIKGLCDNGRVDSALVHYRDMQR--HCAPSVITYTILVDALCKSARISDASLILEDM 128

Query: 385 VDGGSVPRE-----------------------------------YTYKLVCDALNAAEEP 409
           ++ G  P                                     +TY ++ D     E P
Sbjct: 129 IEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERP 188

Query: 410 SLLDDGLRKRIRDGIEYRF 428
                 L++ ++ G E  F
Sbjct: 189 QDGAKLLQEMVKYGCEPNF 207



 Score = 45.8 bits (107), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 37/141 (26%)

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI----------RYYSVVNE--- 337
           NCL+    +  + + A +LF +     C P+ +TY++ I          + Y +++E   
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 338 ----------------------IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
                                 +D A+   R MQ   H  P+  +YT ++ ALC++ R+ 
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ--RHCAPSVITYTILVDALCKSARIS 119

Query: 376 EARDFLAELVDGGSVPREYTY 396
           +A   L ++++ G  P   TY
Sbjct: 120 DASLILEDMIEAGCAPNVVTY 140



 Score = 41.6 bits (96), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           +++A E Y  V R   +F + +TC  +     +   +      L++M R G+   V   +
Sbjct: 328 VDEAYEVYE-VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYT 386

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +  LI    +   ++++LA F  M    C P V  Y++VI+ LC+         LL+ M
Sbjct: 387 I--LIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTM 443


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 140/297 (47%), Gaps = 18/297 (6%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           N    F+ W  +   + H+    K M  +  +      +W  +++M RR N + V+    
Sbjct: 136 NLGYRFFVWASKQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEM-RRENPQFVSPYVF 194

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             L++      +V +A+     M ++ C PD + +  +++ALC+ G+  +A  L E M +
Sbjct: 195 VVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRI 254

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              R  P +  +T L+  +C+ G           ++ EA ++   +   GF PD+V YN 
Sbjct: 255 ---RFTPTLKHFTSLLYGWCREG-----------KLMEAKYVLVQIREAGFEPDIVVYNN 300

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+ G     ++  A +L  +M +K C PN +++ + I+      ++++A+ +  +MQ+  
Sbjct: 301 LLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSC- 359

Query: 353 HGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            G P  + +YT +I   C+ G++ +  + L  ++  G +P   TY  +  A    EE
Sbjct: 360 -GCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEE 415



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 115/293 (39%), Gaps = 55/293 (18%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           +A    +   +D LK+M R+     V   S T LI+ L  +  + EA+  F+ M+   C 
Sbjct: 305 YAAAGKMVDAYDLLKEMRRKECEPNVM--SFTTLIQALCAKKKMEEAMRVFFEMQSCGCP 362

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            D   Y  +I+  C+ G  +K   LL+ M   G    P+  TY  +++++ K        
Sbjct: 363 ADAVTYTTLISGFCKWGKISKGYELLDNMIQQGH--IPNPMTYLHIMAAHEK-------- 412

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              +  + E   L   M   G  PD+  YN +I   CK   I+  + ++++M   G  P 
Sbjct: 413 ---KEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPG 469

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY-------------------- 361
             T+   I  +     + +A E  ++M  +  G+ ++  Y                    
Sbjct: 470 LDTFVIMIHGFLSQRCLVEACEFFKEM--VGRGLLSAPQYGTLKELLNSLLRAEKLEMSK 527

Query: 362 ------------------TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
                             T  IHAL   G V EA  +  +++D G +P+  T+
Sbjct: 528 DVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGVMPQPDTF 580



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 25/220 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + E +     M++  C PD+  YN+VI   C++G   +   +  +ME  G    P + T+
Sbjct: 416 LEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGL--SPGLDTF 473

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV--PDVVAYNCLIDGCCKTYR 302
            I+I  +             +R + EA   F+ M+ +G +  P       L++   +  +
Sbjct: 474 VIMIHGFLS-----------QRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAEK 522

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           +E + +++  +  KGC  N   +  +I        + +A      M  ++ GV P   ++
Sbjct: 523 LEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDM--MDAGVMPQPDTF 580

Query: 362 TPIIHALCEAGRVLEARDFLAEL---VDGGSVPREYTYKL 398
             ++  L    R L  R   AE+   V   +  RE T+K+
Sbjct: 581 AKLMRGL----RKLYNRQIAAEITEKVRKMAAEREMTFKM 616


>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
 gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
          Length = 1429

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 103/201 (51%), Gaps = 14/201 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           RPD   YN +++A  R  N   A  + E ME    RC PD++TY  +IS Y + G+    
Sbjct: 294 RPDAITYNTLLSACSRDSNLEGAVKVFEDME--AHRCQPDLWTYNAMISVYGRCGLAA-- 349

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                    EA  LF  +  KGF PD V YN L+    +    E+  E++  M K G   
Sbjct: 350 ---------EAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGK 400

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + +TYN+ I  Y    ++D A+++ + M+ L+   P + +YT +I +L +A R +EA   
Sbjct: 401 DEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAAL 460

Query: 381 LAELVDGGSVPREYTYK-LVC 400
           ++E++D G  P   TY  L+C
Sbjct: 461 MSEMLDVGIKPTLQTYSALIC 481



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 17/218 (7%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A+  F  M+  RC+PD++ YN +I+   R G   +A  L  ++EL GF   PD  TY  L
Sbjct: 316 AVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFIELELKGF--SPDAVTYNSL 373

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           + ++ +            R   +   +++ M   GF  D + YN +I    K  +++ AL
Sbjct: 374 LYAFAR-----------ERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLAL 422

Query: 308 ELFDDMNK-KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
           +L+ DM    G  P+ +TY   I      N   +A  +M +M  L+ G+ PT  +Y+ +I
Sbjct: 423 QLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEM--LDVGIKPTLQTYSALI 480

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
               +AG+  EA D  + ++  G+ P    Y ++ D L
Sbjct: 481 CGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVL 518



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 99/228 (43%), Gaps = 13/228 (5%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           V  ++ VLG     + A+  F R +       V  YN ++    R G F+KA+ LL+ M 
Sbjct: 194 VAAILGVLGRWNQESLAVEIFTRAEP-TVGDRVQVYNAMMGVYSRSGKFSKAQELLDAMR 252

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G  C PD+ ++  LI++  K G  T               L  ++   G  PD + YN
Sbjct: 253 QRG--CVPDLISFNTLINARLKSGGLTPNLVV---------ELLDMVRNSGLRPDAITYN 301

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L+  C +   +E A+++F+DM    C P+  TYN+ I  Y       +A  +  +++ L
Sbjct: 302 TLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFIELE-L 360

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
               P + +Y  +++A        + ++   ++   G    E TY  +
Sbjct: 361 KGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTI 408



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 16/225 (7%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
           F  + +T   +   FAR  N + + +  + M + G G+   T     +I + G++G ++ 
Sbjct: 363 FSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMT--YNTIIHMYGKQGQLDL 420

Query: 188 ALATFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           AL  +  MK    R PD   Y V+I++L +     +A  L+ +M   G +  P + TY+ 
Sbjct: 421 ALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIK--PTLQTYSA 478

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI  Y K G +            EA   F  ML  G  PD +AY+ ++D   +     +A
Sbjct: 479 LICGYAKAGKRE-----------EAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKA 527

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
             L+ DM   G  P+   Y   I      N  D   + +R M+ L
Sbjct: 528 WVLYRDMISDGHTPSHSLYELMILGLMKENRSDDVQKTIRDMEEL 572



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 117/266 (43%), Gaps = 24/266 (9%)

Query: 161  RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
            R +G      +   L+    E G    A A F  M +    P V + N +++ALC  G  
Sbjct: 779  RQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRL 838

Query: 221  NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
             +   ++E+++  GF+      +  +++ ++ + G            I+E N ++  M  
Sbjct: 839  EELYVVVEELQDMGFKISKS--SILLMLDAFARAG-----------NIFEVNKIYSSMKA 885

Query: 281  KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
             G++P +  Y  +I+  CK  R+  A  +  +M +         +NS ++ Y+V+ +  K
Sbjct: 886  AGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKK 945

Query: 341  AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             +++ ++++    G+ P  ++Y  +I   C   R  E    + ++ + G  P+  TYK +
Sbjct: 946  TVQVYQRIK--ESGLEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLDPKLDTYKSL 1003

Query: 400  CDA------LNAAEE--PSLLDDGLR 417
              A      L  AE+    LL  GL+
Sbjct: 1004 ISAFGKQKCLEQAEQLFEELLSKGLK 1029



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 19/220 (8%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR--CPPDVYTY 244
           EA   F  ++   C P       ++   C++G    A  ++ Q E  GF   C P    Y
Sbjct: 699 EASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPETAYQVVNQAETKGFHFACSP---MY 755

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           T +I +Y K             ++W+ A  +   +   G  PD+  +N L+    +    
Sbjct: 756 TDIIEAYGKL------------KLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCY 803

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           ERA  +F+ M + G  P   + N  +    V   +++   ++ ++Q++   + + SS   
Sbjct: 804 ERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMGFKI-SKSSILL 862

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++ A   AG + E     + +   G +P    Y+++ + L
Sbjct: 863 MLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELL 902



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 106/282 (37%), Gaps = 52/282 (18%)

Query: 155  LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
            L+DM     G  ++ SS+  ++      G + E    +  MK     P +  Y ++I  L
Sbjct: 848  LQDM-----GFKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELL 902

Query: 215  CRVGNFNKARFLLEQMELPGFRCP---------------------------------PDV 241
            C+      A  ++ +ME   F+                                   PD 
Sbjct: 903  CKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDE 962

Query: 242  YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
             TY  LI  YC+            RR  E   L + M   G  P +  Y  LI    K  
Sbjct: 963  TTYNTLIIMYCR-----------DRRPEEGYSLMQQMRNLGLDPKLDTYKSLISAFGKQK 1011

Query: 302  RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
             +E+A +LF+++  KG   +R  Y++ ++         KA ++++ M+  N G+ PT ++
Sbjct: 1012 CLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMK--NAGIEPTLAT 1069

Query: 361  YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
               ++ +   +G   EA   L+ L +         Y  V DA
Sbjct: 1070 MHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTTLPYSSVIDA 1111



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 17/227 (7%)

Query: 131  NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEAL 189
            +E T   + I++ R    +  +  ++ M   G + +L T  S   LI   G++  + +A 
Sbjct: 961  DETTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLDPKLDTYKS---LISAFGKQKCLEQAE 1017

Query: 190  ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
              F  +     + D   Y+ ++      G+ +KA  LL+ M+  G    P + T  +L+ 
Sbjct: 1018 QLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIE--PTLATMHLLMV 1075

Query: 250  SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
            SY   G      K +       ++L    +    +P    Y+ +ID   ++   +  +E 
Sbjct: 1076 SYSSSGNPQEAEKVL-------SNLKNTEVELTTLP----YSSVIDAYLRSKDYKSGIER 1124

Query: 310  FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
              +M K+G  P+   +  F+R  S   E  + + +++ +Q++   +P
Sbjct: 1125 LLEMKKEGLEPDHRIWTCFVRAASFSKEKSEVMLLLKALQDIGFDIP 1171


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 145/301 (48%), Gaps = 30/301 (9%)

Query: 87  AYNIANNVLVLGPAAYRDPQKVTLGL--------NKATEFYHWVERFFDFFHNEMTCKEM 138
           A +I   +L LG     +P +VT+G         N+ ++    V++  +  +        
Sbjct: 242 ALSILGKMLKLG----YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 297

Query: 139 GIV--FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196
            I+    +   V   +DF K++ R+G    V T   T L+  L      ++A      M 
Sbjct: 298 AIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT--YTALVNGLCNSSRWSDAARLLSDMI 355

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
           + +  P+V  Y+ +++A  + G   +A+ L E+M        PD+ TY+ LI+  C    
Sbjct: 356 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEM--VRMSIDPDIVTYSSLINGLC---- 409

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                  +  RI EAN +F LM+ KG + DVV+YN LI+G CK  R+E  ++LF +M+++
Sbjct: 410 -------LHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 462

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           G + N VTYN+ I+ +    ++DKA E   +M       P   +Y  ++  LC+ G + +
Sbjct: 463 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGIS-PDIWTYNILLGGLCDNGELEK 521

Query: 377 A 377
           A
Sbjct: 522 A 522



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 17/260 (6%)

Query: 165  ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
            +LVT   V   +  L + G  + A     +M+Q +  P V  YN +I+ LC+  + + A 
Sbjct: 834  DLVTYGVV---VNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 890

Query: 225  FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
             L ++ME  G R  P+V TY+ LIS  C YG           R  +A+ L   M+ +   
Sbjct: 891  NLFKEMETKGIR--PNVVTYSSLISCLCNYG-----------RWSDASRLLSDMIERKIN 937

Query: 285  PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
            PDV  ++ LID   K  ++  A +L+D+M K+   P+ VTY+S I  + + + +D+A +M
Sbjct: 938  PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 997

Query: 345  MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
               M +  H  P   +Y  +I   C+  RV E  +   E+   G V    TY ++   L 
Sbjct: 998  FEFMVS-KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLF 1056

Query: 405  AAEEPSLLDDGLRKRIRDGI 424
             A +  +  +  ++ + DG+
Sbjct: 1057 QAGDCDMAQEIFKEMVSDGV 1076



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 29/247 (11%)

Query: 185  VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
            +++AL  F  M+    RP+V  Y+ +I+ LC  G ++ A  LL  M     +  PDV+T+
Sbjct: 886  MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM--IERKINPDVFTF 943

Query: 245  TILISSYCKYGMQTGCRK------------------------AIRRRIWEANHLFRLMLF 280
            + LI ++ K G      K                         +  R+ EA  +F  M+ 
Sbjct: 944  SALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 1003

Query: 281  KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            K   PDVV YN LI G CK  R+E  +E+F +M+++G + N VTYN  I+      + D 
Sbjct: 1004 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 1063

Query: 341  AIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            A E+ ++M  ++ GVP +  +Y  ++  LC+ G++ +A      L      P  YTY ++
Sbjct: 1064 AQEIFKEM--VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 1121

Query: 400  CDALNAA 406
             + +  A
Sbjct: 1122 IEGMCKA 1128



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 132/298 (44%), Gaps = 41/298 (13%)

Query: 150  GLWD----FLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
            G W      L DM  R+ N ++ T S+   LI    +EG + EA   +  M +    P +
Sbjct: 919  GRWSDASRLLSDMIERKINPDVFTFSA---LIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 975

Query: 205  YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
              Y+ +IN  C     ++A+ + E M      C PDV TY  LI  +CKY          
Sbjct: 976  VTYSSLINGFCMHDRLDEAKQMFEFM--VSKHCFPDVVTYNTLIKGFCKY---------- 1023

Query: 265  RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             +R+ E   +FR M  +G V + V YN LI G  +    + A E+F +M   G  PN +T
Sbjct: 1024 -KRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 1082

Query: 325  YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            YN+ +       +++KA+ +   +Q  +   PT  +Y  +I  +C+AG+V +  D    L
Sbjct: 1083 YNTLLDGLCKNGKLEKAMVVFEYLQR-SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 1141

Query: 385  VDGGSVPREYTYKLV------------CDAL--NAAEEPSLLDDG-----LRKRIRDG 423
               G  P    Y  +             DAL     E+ +L + G     +R R+RDG
Sbjct: 1142 SLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDG 1199



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 14/210 (6%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M+    R D+Y +N+VIN  C     + A  +L +M   G+   PD  T   L++ +C+
Sbjct: 213 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYE--PDRVTIGSLVNGFCR 270

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                      R R+ +A  L   M+  G+ PD+VAYN +ID  CKT R+  A + F ++
Sbjct: 271 -----------RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI 319

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            +KG  PN VTY + +      +    A  ++  M       P   +Y+ ++ A  + G+
Sbjct: 320 ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGK 378

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           VLEA++   E+V     P   TY  + + L
Sbjct: 379 VLEAKELFEEMVRMSIDPDIVTYSSLINGL 408



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 19/234 (8%)

Query: 142  FARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            F +   V+   +  ++MS+RG   LV  T +   LI+ L + G  + A   F  M     
Sbjct: 1020 FCKYKRVEEGMEVFREMSQRG---LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 1076

Query: 201  RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
             P++  YN +++ LC+ G   KA  + E ++    +  P +YTY I+I   CK G     
Sbjct: 1077 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS--KMEPTIYTYNIMIEGMCKAG----- 1129

Query: 261  RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  ++ +   LF  +  KG  PDVVAYN +I G C+    E A  LF +M + G +P
Sbjct: 1130 ------KVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 1183

Query: 321  NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
            N   YN+ IR      + + + E++++M++   G    +S   ++  +   GR+
Sbjct: 1184 NSGCYNTLIRARLRDGDREASAELIKEMRSC--GFAGDASTIGLVTNMLHDGRL 1235



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 128/270 (47%), Gaps = 34/270 (12%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CK+  +   R  + K  +D+ + +SR G  EL                  +++A+A F  
Sbjct: 644 CKK-ALSLLRAFSGKTSYDYREKLSRNGLSELK-----------------LDDAVALFGE 685

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M + R  P +  ++ +++A+ ++  F+    L EQM+  G   P + YTY+ILI+ +C+ 
Sbjct: 686 MVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGI--PHNHYTYSILINCFCR- 742

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                     R ++  A  +   M+  G+ P++V  + L++G C + RI  A+ L D M 
Sbjct: 743 ----------RSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMF 792

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGR 373
             G  PN VT+N+ I    + N+  +A+ ++ +M  +  G  P   +Y  +++ LC+ G 
Sbjct: 793 VTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRM--VAKGCQPDLVTYGVVVNGLCKRGD 850

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              A + L ++  G   P    Y  + D L
Sbjct: 851 TDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 880



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 119/294 (40%), Gaps = 38/294 (12%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L DM ++     V T S   L+    + G V EA   F  M +    PD+  Y+ +IN 
Sbjct: 350 LLSDMIKKKITPNVITYSA--LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 407

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------- 266
           LC     ++A  + + M   G  C  DV +Y  LI+ +CK        K  R        
Sbjct: 408 LCLHDRIDEANQMFDLMVSKG--CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLV 465

Query: 267 -----------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
                             + +A   F  M F G  PD+  YN L+ G C    +E+AL +
Sbjct: 466 SNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVI 525

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
           F+DM K+    + VTY + IR      ++++A  +   + +L    P   +YT ++  LC
Sbjct: 526 FEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL-SLKGLKPDIVTYTTMMSGLC 584

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTY---------KLVCDALNAAEEPSLLDD 414
             G + E      ++   G +  + T          +L+   L+    PSLL D
Sbjct: 585 TKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKD 638



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 109/220 (49%), Gaps = 16/220 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +N+A+  F  M + R  P +  +N +++A+ ++  ++    L ++ME+ G R   D+YT+
Sbjct: 169 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIR--NDLYTF 226

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            I+I+ +C       C +     +  A  +   ML  G+ PD V    L++G C+  R+ 
Sbjct: 227 NIVINCFC------CCFQ-----VSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 275

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A+ L D M + G  P+ V YN+ I        ++ A +  ++++    G+ P   +YT 
Sbjct: 276 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER--KGIRPNVVTYTA 333

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +++ LC + R  +A   L++++     P   TY  + DA 
Sbjct: 334 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 373



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 18/214 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA+A   +M     +P+   +N +I+ L      ++A  L+++M   G  C PD+ TY
Sbjct: 781 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG--CQPDLVTY 838

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ++++  CK G               A +L   M      P V+ YN +IDG CK   ++
Sbjct: 839 GVVVNGLCKRGDTD-----------LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMD 887

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYT 362
            AL LF +M  KG  PN VTY+S I           A  ++  M  + +N   P   +++
Sbjct: 888 DALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN---PDVFTFS 944

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +I A  + G+++EA     E+V     P   TY
Sbjct: 945 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 978



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G   D+  +N +I+  C  +++  AL +   M K G  P+RVT  S +  +   N +  A
Sbjct: 218 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 277

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL--- 398
           + ++ KM  + +  P   +Y  II +LC+  RV +A DF  E+   G  P   TY     
Sbjct: 278 VSLVDKMVEIGYK-PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVN 336

Query: 399 -VCDALNAAEEPSLLDDGLRKRI 420
            +C++   ++   LL D ++K+I
Sbjct: 337 GLCNSSRWSDAARLLSDMIKKKI 359


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 121/262 (46%), Gaps = 36/262 (13%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           E    F  M +    PDV  YN +++  C V   N A+ +   M   G    PD+ +Y I
Sbjct: 283 EGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVN--PDIRSYNI 340

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI+ +CK            +++ +A +LF  M  K  +P+VV YN LIDG  K+ RI  A
Sbjct: 341 LINGFCKI-----------KKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYA 389

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP---------- 356
           L+L D M+ +G  PN +TYNS I      +++DKAI ++ K +  + G+           
Sbjct: 390 LQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFK--DQGIQPSMYTYTILI 447

Query: 357 -----------TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
                      T ++Y  +IH  C+ G   EA   L+++ D   +P   TY++   +L  
Sbjct: 448 DGLCKVEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLD 507

Query: 406 AEEPSLLDDGLRKRIRDGIEYR 427
             E    +   R+ I  G+  R
Sbjct: 508 NNENDKAEKLFREMITRGLLNR 529



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 16/249 (6%)

Query: 157 DMSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           D+ +R +G+LV  ++V    +I  + ++  VN+A   +  M      P+V  Y+ +I+  
Sbjct: 181 DLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 240

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
             VG    A  L  ++ L   +  PD YT+ IL+  +CK            R++ E   +
Sbjct: 241 FVVGKLKDAIDLFNKIILENIK--PDGYTFNILVDGFCK-----------DRKMKEGKTV 287

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           F +M+ +G +PDVV YN L+DG C    +  A  +F+ M + G  P+  +YN  I  +  
Sbjct: 288 FAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCK 347

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
           + ++DKA+ +  +M   N  +P   +Y  +I  L ++GR+  A   + ++ D G  P   
Sbjct: 348 IKKVDKAMNLFNEMHCKN-IIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNIL 406

Query: 395 TYKLVCDAL 403
           TY  + DAL
Sbjct: 407 TYNSIIDAL 415



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 112/259 (43%), Gaps = 45/259 (17%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A++ F R+ +    P  + +N ++ +L +  +++    L ++ME  G +  P+++  
Sbjct: 67  VDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIK--PNLFNC 124

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT---- 300
            ILI  +C+ G+       I  +I +A      ++  GF  D V+Y  LI G CK     
Sbjct: 125 NILIYCFCQLGL-------IPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETR 177

Query: 301 -------------------------------YRIERALELFDDMNKKGCIPNRVTYNSFI 329
                                            +  A +L+ +M  KG  PN VTY++ I
Sbjct: 178 AALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALI 237

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             + VV ++  AI++  K+  L +  P   ++  ++   C+  ++ E +   A ++  G 
Sbjct: 238 SGFFVVGKLKDAIDLFNKII-LENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGI 296

Query: 390 VPREYTYKLVCDALNAAEE 408
           +P   TY  + D     +E
Sbjct: 297 IPDVVTYNSLMDGYCLVKE 315



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 97/270 (35%), Gaps = 86/270 (31%)

Query: 122 VERFFDFFHNEMTCKEM--GIV--------FARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           V++  + F NEM CK +   +V         ++   +      +  M  RG    + T +
Sbjct: 351 VDKAMNLF-NEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYN 409

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              +I  L +   V++A+A   + K    +P +Y Y ++I+ LC+V  ++          
Sbjct: 410 --SIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGYDIT-------- 459

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
                    V TY ++I  +CK G+                                   
Sbjct: 460 ---------VNTYNVMIHGFCKKGL----------------------------------- 475

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--- 348
                       + AL L   M    CIPN VTY   IR     NE DKA ++ R+M   
Sbjct: 476 -----------FDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKAEKLFREMITR 524

Query: 349 --QNLNHGVPTSS-----SYTPIIHALCEA 371
              N +   P SS     S T + H  C++
Sbjct: 525 GLLNRSASYPCSSMKIHQSLTMVQHTWCDS 554


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 131/252 (51%), Gaps = 21/252 (8%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            L+ MS+ G    +VT +++   I  L E+  V+ A+    +MK + C+PD+  YN ++ 
Sbjct: 169 LLEKMSKHGCTANIVTYNAI---INGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLK 225

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC    +  A  L++ M   G  C PD  T+  LI   C+ G+           + +A 
Sbjct: 226 GLCSAARWVDAEELMDNMTQNG--CLPDNVTFNTLIGFLCQKGL-----------MVDAI 272

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F+ M  KG  P+ + Y+ +I G  K  ++++ALELF++M  KG  P+++ Y       
Sbjct: 273 EVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI-YQLLAECL 331

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           +  + I++AI+ +RK+Q+   G+ P +  Y  I+  LC  G+   A D +A +V  G +P
Sbjct: 332 NDDDTIEEAIQTVRKLQD--SGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMP 389

Query: 392 REYTYKLVCDAL 403
            + TY ++ + L
Sbjct: 390 DDLTYVILIEGL 401



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 28/247 (11%)

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           EG V++AL     +    C+P    YN V+  LC    +  A  L+ +M      CPP+ 
Sbjct: 90  EGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRE--NCPPNE 147

Query: 242 YTYTILISSYCKYGM------------QTGCRKAI------------RRRIWEANHLFRL 277
            T+ ++I S C+ G+            + GC   I            +R +  A  L   
Sbjct: 148 ATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSK 207

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M   G  PD+V YN L+ G C   R   A EL D+M + GC+P+ VT+N+ I +      
Sbjct: 208 MKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGL 267

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           +  AIE+ ++M +     P S +Y+ II  L +A ++ +A +   E+   G  P +  Y+
Sbjct: 268 MVDAIEVFKQMPD-KGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNP-DKIYQ 325

Query: 398 LVCDALN 404
           L+ + LN
Sbjct: 326 LLAECLN 332



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 29/248 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L E G V +AL+    M    C PDV  YN+++ A C+   + +A  L++ M   G
Sbjct: 13  LIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEG 72

Query: 235 FRCPPDVYTYTILISSYCKYG------------MQTGCRKAI------------RRRIWE 270
             C P+  TY +L+   C  G               GC+ +               R  +
Sbjct: 73  --CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGD 130

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A+ L   ML +   P+   +N +I   C+   +++A++L + M+K GC  N VTYN+ I 
Sbjct: 131 ADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIIN 190

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                  +D A+ ++ KM+  ++G  P   +Y  ++  LC A R ++A + +  +   G 
Sbjct: 191 GLCEQRNVDGAMGLLSKMK--SYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGC 248

Query: 390 VPREYTYK 397
           +P   T+ 
Sbjct: 249 LPDNVTFN 256



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 14/203 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P+ Y YN +I+ LC  G    A  +L+ M   G  C PDV TY IL+ + CK       
Sbjct: 4   QPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRG--CAPDVVTYNILLEATCK------- 54

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                R   +A  L  LM  +G  P+ V YN L+DG C    ++ ALEL  ++   GC P
Sbjct: 55  ----GRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKP 110

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + V YN+ ++          A E++ +M   N   P  +++  +I++LC  G + +A   
Sbjct: 111 STVNYNTVLKGLCSAERWGDADELVTEMLRENC-PPNEATFNVVIYSLCRKGLLQQAIQL 169

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L ++   G      TY  + + L
Sbjct: 170 LEKMSKHGCTANIVTYNAIINGL 192


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 24/272 (8%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           E TCK  G         K     L +M  +G    + T +V  ++  + +EG V++A+  
Sbjct: 201 EATCKRSG--------YKQAMKLLDEMRDKGCTPDIVTYNV--VVNGICQEGRVDDAIEF 250

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              +  + C P+  +YN+V+  LC    +  A  L+ +M   G  CPP+V T+ +LIS  
Sbjct: 251 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG--CPPNVVTFNMLISFL 308

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           C+ G+           +  A  +   +   G  P+ ++YN L+   CK  ++++A+   D
Sbjct: 309 CRKGL-----------VEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLD 357

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
            M  +GC P+ V+YN+ +       E+D A+E++ ++++     P   SY  +I  L +A
Sbjct: 358 LMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKD-KGCAPVLISYNTVIDGLTKA 416

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           G+  EA + L E+V  G  P   TY  +   L
Sbjct: 417 GKTKEALELLNEMVSKGLQPDIITYSTIAAGL 448



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 118/257 (45%), Gaps = 29/257 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+ L   G    ALA    M + RC PDV  Y +++ A C+   + +A  LL++M   G
Sbjct: 164 LIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKG 223

Query: 235 FRCPPDVYTYTILISSYCKYGM------------QTGCRK------------AIRRRIWE 270
             C PD+ TY ++++  C+ G               GC                  R  +
Sbjct: 224 --CTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWED 281

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L   M  KG  P+VV +N LI   C+   +E ALE+ + + K GC PN ++YN  + 
Sbjct: 282 AEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLH 341

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
            +    ++DKA+  +  M  ++ G  P   SY  ++ ALC +G V  A + L +L D G 
Sbjct: 342 AFCKQKKMDKAMAFLDLM--VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 399

Query: 390 VPREYTYKLVCDALNAA 406
            P   +Y  V D L  A
Sbjct: 400 APVLISYNTVIDGLTKA 416



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 116/258 (44%), Gaps = 34/258 (13%)

Query: 153 DFLKDMSRRGN--------GELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRP 202
           D L+ + RRG         G      + TC  LIK L   G   EA     R     C P
Sbjct: 70  DRLRSLVRRGELDEALRLVGSARRPDAGTCAALIKKLSASGRTAEA-----RRVLAACGP 124

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           DV AYN ++   C  G  + AR L+ +M +      PD YTY  LI   C  G       
Sbjct: 125 DVMAYNAMVAGYCGAGQLDAARRLVAEMPVE-----PDAYTYNTLIRGLCGRG------- 172

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               R   A  +   ML +  VPDVV Y  L++  CK    ++A++L D+M  KGC P+ 
Sbjct: 173 ----RTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDI 228

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           VTYN  +        +D AIE ++ +   ++G  P + SY  ++  LC A R  +A + +
Sbjct: 229 VTYNVVVNGICQEGRVDDAIEFLKNLP--SYGCEPNTVSYNIVLKGLCTAERWEDAEELM 286

Query: 382 AELVDGGSVPREYTYKLV 399
            E+   G  P   T+ ++
Sbjct: 287 GEMGQKGCPPNVVTFNML 304



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 132/271 (48%), Gaps = 26/271 (9%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + + +M ++G    V T ++  LI  L  +GLV  AL    ++ ++ C P+  +YN +++
Sbjct: 284 ELMGEMGQKGCPPNVVTFNM--LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLH 341

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           A C+    +KA   L+ M   G  C PD+ +Y  L+++ C+ G            +  A 
Sbjct: 342 AFCKQKKMDKAMAFLDLMVSRG--CYPDIVSYNTLLTALCRSG-----------EVDVAV 388

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L   +  KG  P +++YN +IDG  K  + + ALEL ++M  KG  P+ +TY++     
Sbjct: 389 ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGL 448

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
              + I+ AI    K+Q++  G+ P +  Y  II  LC+      A D  A ++  G +P
Sbjct: 449 CREDRIEDAIRAFGKVQDM--GIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMP 506

Query: 392 REYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            E TY ++ + L          +GL K  RD
Sbjct: 507 NESTYTILIEGLAY--------EGLIKEARD 529


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 137/298 (45%), Gaps = 47/298 (15%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +  LK+M R+G   +  TS+ T +I  L +   V ++   F  MK+    PDVY Y ++I
Sbjct: 437 FQILKEMMRKGF--VPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILI 494

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY-------------------- 251
           ++ C+ G   +AR   ++M   G  C P+V TYT L+ +Y                    
Sbjct: 495 DSFCKAGLIEQARSWFDEMRSVG--CSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAA 552

Query: 252 ---------------CKYG-MQTGCRKAIRRRIWEANHLFRLMLFKG-----FVPDVVAY 290
                          CK G +Q  C +   + I  + ++     F+G       P+VV Y
Sbjct: 553 CYPNAVTYSALIDGLCKAGEIQKAC-EVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTY 611

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LIDG CK  ++  A EL D M   GC PN++ Y++ I  +  + +ID A E+  +M  
Sbjct: 612 GALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTK 671

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
             + +P+  +YT +I  + + GR+  A   L+E+++    P   TY  + D L+   E
Sbjct: 672 CGY-LPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGE 728



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 155/380 (40%), Gaps = 52/380 (13%)

Query: 57  RFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVL--VLGPAAYRDPQKVTL---- 110
           R +F   RS+G        T L    LK +    A+++   ++  A Y  P  VT     
Sbjct: 507 RSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACY--PNAVTYSALI 564

Query: 111 -GLNKATEFYHWVERF-----------FDF-FHNEMTCKEMGIVFARGNNVKGL------ 151
            GL KA E     E +            DF F    TC     V   G  + GL      
Sbjct: 565 DGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKV 624

Query: 152 ---WDFLKDMSRRG--NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
               + L  M   G    ++V  + +    K+    G ++ A   F RM +    P V+ 
Sbjct: 625 SDAHELLDAMLAAGCEPNQIVYDALIDGFCKI----GKIDNAQEVFLRMTKCGYLPSVHT 680

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           Y  +I+ + + G  + A  +L +M      C P+V TYT +I    K G           
Sbjct: 681 YTSLIDRMFKDGRLDLAMKVLSEM--LNDSCNPNVVTYTAMIDGLSKVG----------- 727

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            I +A +L  LM  KG  P+VV Y  LIDG  KT + + +L+LF  MN KGC PN VTY 
Sbjct: 728 EIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYR 787

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             I +      +D+A  ++ +M++  H       Y   +     + + + +   L E+  
Sbjct: 788 VLINHCCAAGLLDEAHLLLDEMKH-THWPKHLQGYHCAVQGF--SKKFIASLGLLEEMES 844

Query: 387 GGSVPREYTYKLVCDALNAA 406
             +VP    Y ++ D+ + A
Sbjct: 845 HETVPIAPVYGMLIDSFSKA 864



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 15/185 (8%)

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC VG F KA  +L++M   GF   PD  TYT +I+  C+            +++ ++  
Sbjct: 427 LCGVGKFEKAFQILKEMMRKGF--VPDTSTYTKVITFLCQ-----------AKKVEKSFL 473

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF+ M   G  PDV  Y  LID  CK   IE+A   FD+M   GC PN VTY + +  Y 
Sbjct: 474 LFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYL 533

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD-GGSVPR 392
              ++ +A ++  +M +     P + +Y+ +I  LC+AG + +A +   +L+   G+V  
Sbjct: 534 KSKQLIQAHDIFHRMVD-AACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVES 592

Query: 393 EYTYK 397
           ++ ++
Sbjct: 593 DFYFE 597



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 107/263 (40%), Gaps = 48/263 (18%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L +  + T LI  + ++G ++ A+     M    C P+V  Y  +I+ L +VG   KA
Sbjct: 673 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKA 732

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LL  ME  G  C P+V TYT LI    K G      K           LF+ M  KG 
Sbjct: 733 LNLLSLMEEKG--CSPNVVTYTALIDGLGKTGKADASLK-----------LFKQMNSKGC 779

Query: 284 VPDVVAYNCLIDGCCKTYRIERA---------------------------------LELF 310
            P+ V Y  LI+ CC    ++ A                                 L L 
Sbjct: 780 APNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLL 839

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS--YTPIIHAL 368
           ++M     +P    Y   I  +S    ++ A+E+ +++  ++  +  +S+  Y  +I AL
Sbjct: 840 EEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQAL 899

Query: 369 CEAGRVLEARDFLAELVDGGSVP 391
           C A +V EA     E+   G VP
Sbjct: 900 CLASQVEEAFTLYTEMTRKGIVP 922



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 119/271 (43%), Gaps = 21/271 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           FA+     G W    +M  + +  L  T   T +I  L E  L NEA++  +RM+   C 
Sbjct: 245 FAQALCKVGRWADALNMLEKEDFNL-DTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCI 303

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V  Y  +++   +   F   + ++  M   G  C P+   +  L+  YC  G      
Sbjct: 304 PNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEG--CNPNPSLFNSLVHGYCNAGDYA--- 358

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA--LEL----FDDMNK 315
                    A  LF  M   G  P  VAYN  I   C    +  A  L+L    +++M  
Sbjct: 359 --------YAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLA 410

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
             C+ N+V   +F R    V + +KA +++++M      VP +S+YT +I  LC+A +V 
Sbjct: 411 ASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGF-VPDTSTYTKVITFLCQAKKVE 469

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           ++     E+   G  P  YTY ++ D+   A
Sbjct: 470 KSFLLFQEMKRAGVNPDVYTYTILIDSFCKA 500



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 43/224 (19%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L  M  +G    V T   T LI  LG+ G  + +L  F +M    C P+   Y V+IN
Sbjct: 734 NLLSLMEEKGCSPNVVT--YTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLIN 791

Query: 213 ALCRVGNFNKARFLLEQME-------LPGFRCP------------------------PDV 241
             C  G  ++A  LL++M+       L G+ C                         P  
Sbjct: 792 HCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIA 851

Query: 242 YTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
             Y +LI S+ K G ++T     + + + E +    +            Y  LI   C  
Sbjct: 852 PVYGMLIDSFSKAGRLETALE--LHKELVEVSSSLNM-------TSTGMYASLIQALCLA 902

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
            ++E A  L+ +M +KG +P+ + + S ++    VN+ D+A+++
Sbjct: 903 SQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQL 946



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 100/293 (34%), Gaps = 23/293 (7%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
           F+ W ER   + H       +  +    +  +     L+++    +   V    +  L++
Sbjct: 120 FFLWAERQVGYSHTGACYDALAEILGFEDPARTAERLLREIGE--DDREVLRRLLNVLVR 177

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
                GL +EAL    R+K F  RP    YN ++  L   G       + ++M   GF  
Sbjct: 178 RCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGF-- 235

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
             D  T      + CK G        + +              + F  D V    +I G 
Sbjct: 236 CMDRSTIGYFAQALCKVGRWADALNMLEK--------------EDFNLDTVLCTQMISGL 281

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID--KAIEMMRKMQNLNHGV 355
            +      A+     M    CIPN VTY + +  +    +    K I  M   +  N   
Sbjct: 282 MEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCN--- 338

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           P  S +  ++H  C AG    A      +   GS P    Y +   ++   EE
Sbjct: 339 PNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEE 391


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 15/232 (6%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           V   + T L+K L  +   ++A+     RM Q  C P+V++YN+++  LC      +A  
Sbjct: 124 VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALE 183

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           LL+ M   G  CPPDV +YT +I+ + K G            + +A   +  ML +G +P
Sbjct: 184 LLQMMPDDGGDCPPDVVSYTTVINGFFKEG-----------DLDKAYGTYHEMLDRGILP 232

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           +VV Y+ +I   CK   +++A+E+   M K G +PN  TYNS +  Y    +  +AI  +
Sbjct: 233 NVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292

Query: 346 RKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +KM   + GV P   +Y  ++  LC+ GR  EAR     +   G  P   TY
Sbjct: 293 KKMH--SDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 137/279 (49%), Gaps = 23/279 (8%)

Query: 141 VFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
            +A+   V         M ++G N + VT  +V   I +L + G V +A+  F +M   R
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV---IGILCKSGRVEDAMRYFEQMIDER 439

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             P    YN +I++LC    ++KA+ L+ +M   G  C   ++ +  +I S+CK G    
Sbjct: 440 LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI-CLDTIF-FNSIIDSHCKEG---- 493

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  R+ E+  LF LM+  G  PD++ Y+ LIDG C   +++ A +L   M   G  
Sbjct: 494 -------RVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+ VTYN+ I  Y  ++ ++ A+ + R+M+  + GV P   +Y  I+  L +  R   A+
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFREME--SSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           +    + + G+     TY ++   L+   + +L D+ LR
Sbjct: 605 ELYVGITESGTQLELSTYNII---LHGLCKNNLTDEALR 640



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 105/223 (47%), Gaps = 14/223 (6%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG V E+   F  M +   +PD+  Y+ +I+  C  G  ++A  LL  M   G +  PD
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK--PD 548

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
             TY  LI+ YCK             R+ +A  LFR M   G  PD++ YN ++ G  +T
Sbjct: 549 CVTYNTLINGYCKIS-----------RMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R   A EL+  + + G      TYN  +      N  D+A+ M + +   +  + T  +
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLET-RT 656

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  +I AL + GR  EA+D  A L   G VP   TY L+ + L
Sbjct: 657 FNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 135/317 (42%), Gaps = 34/317 (10%)

Query: 112 LNKATEFYH-WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           L+KA   YH  ++R      N +T   +     +   +    + L  M +  NG +    
Sbjct: 215 LDKAYGTYHEMLDR--GILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK--NGVMPNCR 270

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +   ++      G   EA+    +M      PDV  YN +++ LC+ G   +AR + + M
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG------------MQTG------------CRKAIRR 266
              G +  P++ TY  L+  Y   G            ++ G            C  A + 
Sbjct: 331 TKRGLK--PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++ +A  +F  M  +G  PD V Y  +I   CK+ R+E A+  F+ M  +   P  + YN
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYN 448

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELV 385
           S I    + ++ DKA E++ +M  L+ G+   +  +  II + C+ GRV+E+      +V
Sbjct: 449 SLIHSLCIFDKWDKAKELILEM--LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 386 DGGSVPREYTYKLVCDA 402
             G  P   TY  + D 
Sbjct: 507 RIGVKPDIITYSTLIDG 523



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 201 RPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           R D  A+  ++  LC     + A   +L +M   G  C P+V++Y IL+   C       
Sbjct: 123 RVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLG--CIPNVFSYNILLKGLCD------ 174

Query: 260 CRKAIRRRIWEANHLFRLMLFKGF--VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                  R  EA  L ++M   G    PDVV+Y  +I+G  K   +++A   + +M  +G
Sbjct: 175 -----ENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRG 229

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
            +PN VTY+S I        +DKA+E++  M   N  +P   +Y  I+H  C +G+  EA
Sbjct: 230 ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK-NGVMPNCRTYNSIVHGYCSSGQPKEA 288

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
             FL ++   G  P   TY  + D L
Sbjct: 289 IGFLKKMHSDGVEPDVVTYNSLMDYL 314



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 17/227 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  Y ++I + C  G  +     L  +   GFR   D   +T L+   C         
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRV--DAIAFTPLLKGLC--------- 137

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG--CI 319
            A +R     + + R M   G +P+V +YN L+ G C   R + ALEL   M   G  C 
Sbjct: 138 -ADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCP 196

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+ V+Y + I  +    ++DKA     +M  L+ G+ P   +Y+ II ALC+A  + +A 
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEM--LDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           + L  +V  G +P   TY  +     ++ +P      L+K   DG+E
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVE 301



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 26/181 (14%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + +AL  F  M+     PD+  YN+++  L +      A+ L   +   G +   ++ TY
Sbjct: 565 MEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQL--ELSTY 622

Query: 245 TILISSYCKYGM--------QTGCRKAIR----------------RRIWEANHLFRLMLF 280
            I++   CK  +        Q  C   ++                 R  EA  LF  +  
Sbjct: 623 NIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSA 682

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G VPDV  Y+ + +   +   +E   +LF  M + GC  N    NS +R      +I +
Sbjct: 683 NGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITR 742

Query: 341 A 341
           A
Sbjct: 743 A 743


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 119/241 (49%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G +NE       M     +PDVY Y+V+IN LC+    + A  L E+M + G    P+  
Sbjct: 185 GDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +  +PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGA 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           + +A +L D+M+ KG  P+++TY + I       ++D A E  ++M   N  +    +YT
Sbjct: 292 LNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   + E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 136 LYFFNILMHRFCKEGDIRLAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + N  F+L   M   G  PDV  Y+ LI+G CK  +++ A ELF++M  KG +P
Sbjct: 186 ------DLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A 
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSL---LPDLITYNTLIYGLCKKGALNQAH 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 297 DLMDEMSMKGLKPDKITYTTLIDG 320



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 15/185 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G  N+A  L+++M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEM 302

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
            + G +  PD  TYT LI   CK G + T      R+R+ + N   RL        D VA
Sbjct: 303 SMKGLK--PDKITYTTLIDGCCKEGDLDTAFEH--RKRMIQEN--IRL--------DDVA 348

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ
Sbjct: 349 YTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQ 408

Query: 350 NLNHG 354
              H 
Sbjct: 409 RDGHA 413


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 16/242 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    ++A  L  +M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  ++R ML +GF PDVV YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SY 361
           +++A  L D+M++KG  P+++TY + I       +++ A E+  +M  +   +      Y
Sbjct: 292 LKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERM--IKESIRLDDVVY 349

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
           T +I  LC+ GR ++A   L E++  G  P + TY ++ +      +     + LR+  R
Sbjct: 350 TALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQR 409

Query: 422 DG 423
           +G
Sbjct: 410 NG 411



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 102/222 (45%), Gaps = 24/222 (10%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     +R +   GL+  + D     NG +    + T LI    + G ++ A+  + +
Sbjct: 217 CKE-----SRMDEANGLFGEMLD-----NGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PDV  YN +I  LC+ G+  +AR+LL++M   G +  PD  TYT LI   CK 
Sbjct: 267 MLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLK--PDKITYTTLIDGSCKE 324

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G      +   R I E+  L           D V Y  LI G C+  R   A ++  +M 
Sbjct: 325 GDLETAFELRERMIKESIRL-----------DDVVYTALIFGLCQEGRAVDAEKMLREML 373

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
           + G  P+  TY   +  +    ++ KA E++R+MQ  N  VP
Sbjct: 374 RVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQR-NGRVP 414



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 107/245 (43%), Gaps = 30/245 (12%)

Query: 185 VNEALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           V   L ++  M  F C   ++  A +++   + R G  + +      +E  G +   D+Y
Sbjct: 9   VRHTLQSYCTMIHFLCTHQMFLEAKSLIQTVVSRKGKDSASAVFAAILETKGTQ-RSDIY 67

Query: 243 TYTILISSYCKYGM---QTGCRKAIRRRIWEA---------NHLFRLMLFK---GFVPDV 287
            ++ LI++Y + G       C +  ++  +            HL +   FK   GF  ++
Sbjct: 68  VFSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEI 127

Query: 288 VA---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           +          +N L+   CK   +  A  +FD + K G  P+ V++N+ +  Y  + ++
Sbjct: 128 LECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDL 187

Query: 339 DKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           D+   +   M+    GV P   +Y+ +I+ LC+  R+ EA     E++D G VP   T+ 
Sbjct: 188 DEGFRLKNAMR--ASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFT 245

Query: 398 LVCDA 402
            + D 
Sbjct: 246 TLIDG 250


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 132/315 (41%), Gaps = 54/315 (17%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL--- 227
           + T  I+VLG  G ++EA   F RM    C PD+  Y V+I+ALC  G    A+ L    
Sbjct: 264 TFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKM 323

Query: 228 --------------------------------EQMELPGFRCPPDVYTYTILISSYCKYG 255
                                            QME  G+   PDV T+TIL+   CK  
Sbjct: 324 KANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYM--PDVVTFTILVDVLCK-- 379

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                     R   EA   F +M  +G +P++  YN LI G  +  RIE AL+L   M  
Sbjct: 380 ---------ARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMES 430

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
            G  P   TYN FI Y+    E  KA+E   KM+     VP   +    +++L E GR+ 
Sbjct: 431 VGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKA-KGIVPNIVACNASLYSLAEMGRLR 489

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVK 435
           EA+     L + G  P   TY ++    +   +     + L + IR+G E     V+ V 
Sbjct: 490 EAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCE---PDVIVVN 546

Query: 436 PIMKHKELLKCGEID 450
            ++    L K G +D
Sbjct: 547 SLI--DSLYKAGRVD 559



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 118/256 (46%), Gaps = 19/256 (7%)

Query: 168  TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
            T +S  CLI  L E     +A   F  MK   C PD + +N+++    + G   +   L 
Sbjct: 787  TLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELY 846

Query: 228  EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            ++M     RC PD  TY I+ISS  K              + +A   F  ++   F P  
Sbjct: 847  KEM--ISRRCKPDAITYNIVISSLAK-----------SNNLDKALDFFYDLVSSDFRPTP 893

Query: 288  VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
              Y  LIDG  K  R+E A+ LF++M+  GC PN   +N  I  Y  + + + A ++ ++
Sbjct: 894  RTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKR 953

Query: 348  MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            M  +N G+ P   SYT ++  LC AGRV EA  +  EL   G  P    Y  + + L  +
Sbjct: 954  M--VNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKS 1011

Query: 407  ---EEPSLLDDGLRKR 419
               EE   L + +R R
Sbjct: 1012 QRMEEALALYNEMRNR 1027



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 137/301 (45%), Gaps = 29/301 (9%)

Query: 120  HWVERFFDFFHN---------EMTCKEMGIVFARGNNVKGLWDFLKDM-SRRGNGELVTT 169
            H+ E+ +D F +           T   +  V  +   +  L++  K+M SRR   + +T 
Sbjct: 802  HYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITY 861

Query: 170  SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
            + V   I  L +   +++AL  FY +     RP    Y  +I+ L +VG   +A  L E+
Sbjct: 862  NIV---ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEE 918

Query: 230  MELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M    + C P+   + ILI+ Y K G  +T C+            LF+ M+ +G  PD+ 
Sbjct: 919  MS--DYGCKPNCAIFNILINGYGKIGDTETACQ------------LFKRMVNEGIRPDLK 964

Query: 289  AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            +Y  L+D  C   R++ AL  F+++   G  P+ + YN  I        +++A+ +  +M
Sbjct: 965  SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM 1024

Query: 349  QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            +N    VP   +Y  ++  L  AG V +A+    EL   G  P  +TY  +    + +E 
Sbjct: 1025 RNRGI-VPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSEN 1083

Query: 409  P 409
            P
Sbjct: 1084 P 1084



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 120/262 (45%), Gaps = 19/262 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F   +  K  W  ++      +G +    + T L+ VL +    +EA ATF  M++    
Sbjct: 345 FGDLDTFKEFWSQME-----ADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGIL 399

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+++ YN +I  L R G    A  LL  ME  G +  P  YTY I I  + K G +TG  
Sbjct: 400 PNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQ--PTAYTYNIFIDYFGKSG-ETG-- 454

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                   +A   F  M  KG VP++VA N  +    +  R+  A  +F+ + + G  P+
Sbjct: 455 --------KAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPD 506

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VTYN  ++ YS V ++D+A+ ++ +M   N   P       +I +L +AGRV EA    
Sbjct: 507 SVTYNMMMKCYSKVGQVDEAVNLLSEMIR-NGCEPDVIVVNSLIDSLYKAGRVDEAWQMF 565

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
             + D    P   TY  +   L
Sbjct: 566 DRMKDMKLSPTVVTYNTLLSGL 587



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 122/258 (47%), Gaps = 19/258 (7%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G ++   S   LI +L + G   EAL  + RM     +P +  Y+ ++ AL +  + 
Sbjct: 184 RKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDS 243

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
                LL++ME  G R  P+VYT+TI I    + G           +I EA  +FR M  
Sbjct: 244 EMVMVLLKEMEDLGLR--PNVYTFTICIRVLGRAG-----------KIDEAYEIFRRMDD 290

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G  PD+V Y  LID  C   ++E A ELF  M   G  P++V Y + +  ++   ++D 
Sbjct: 291 EGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDT 350

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK-LV 399
             E   +M+   + +P   ++T ++  LC+A    EA      +   G +P  +TY  L+
Sbjct: 351 FKEFWSQMEADGY-MPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLI 409

Query: 400 CDALNAAEEPSLLDDGLR 417
           C  L A      ++D L+
Sbjct: 410 CGLLRAGR----IEDALK 423



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 14/206 (6%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L E G + EA   F  +++    PD   YN+++    +VG  ++A  LL +M   G  C 
Sbjct: 482 LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG--CE 539

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PDV     LI S  K G           R+ EA  +F  M      P VV YN L+ G  
Sbjct: 540 PDVIVVNSLIDSLYKAG-----------RVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLG 588

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K  R+++A+ELF+ M +K C PN +++N+ +  +   +E++ A++M  KM  ++   P  
Sbjct: 589 KEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCK-PDV 647

Query: 359 SSYTPIIHALCEAGRVLEARDFLAEL 384
            +Y  +I+ L +  +V  A  F  +L
Sbjct: 648 LTYNTVIYGLIKENKVNHAFWFFHQL 673



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 19/228 (8%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R NG    + +   ++K   + G V+EA+     M +  C PDV   N +I++L + G  
Sbjct: 499 RENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRV 558

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           ++A  + ++M+    +  P V TY  L+S   K G           R+ +A  LF  M+ 
Sbjct: 559 DEAWQMFDRMK--DMKLSPTVVTYNTLLSGLGKEG-----------RVQKAIELFESMIE 605

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           K   P+ +++N L+D  CK   +E AL++F  M    C P+ +TYN+ I      N+++ 
Sbjct: 606 KKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNH 665

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE----ARDFLAEL 384
           A     +++   H  P   +   ++  L + G++ +    ARDF+ ++
Sbjct: 666 AFWFFHQLKKSMH--PDHVTICTLLPGLVKCGQIGDAISIARDFMYQV 711



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 32/233 (13%)

Query: 142  FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             A+ NN+    DF  D+         T  +   LI  L + G + EA+  F  M  + C+
Sbjct: 868  LAKSNNLDKALDFFYDLVSSDFRP--TPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCK 925

Query: 202  PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------ 255
            P+   +N++IN   ++G+   A  L ++M   G R  PD+ +YTIL+   C  G      
Sbjct: 926  PNCAIFNILINGYGKIGDTETACQLFKRMVNEGIR--PDLKSYTILVDCLCLAGRVDEAL 983

Query: 256  --------------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
                                +  G  K+  +R+ EA  L+  M  +G VPD+  YN L+ 
Sbjct: 984  YYFNELKSTGLDPDFIAYNRIINGLGKS--QRMEEALALYNEMRNRGIVPDLYTYNSLML 1041

Query: 296  GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
                   +E+A  +++++   G  P+  TYN+ IR YS+    + A  + + M
Sbjct: 1042 NLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNM 1094



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 14/239 (5%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L TT +   +++ L     V +  A F  M++   R D+  Y  +  AL   G   +   
Sbjct: 119 LHTTETCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTT 178

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           +L +M   GF    + Y+Y  LI    + G    C +A+         ++R M+ +G  P
Sbjct: 179 VLNKMRKAGFVL--NAYSYNGLIHLLIQSGF---CGEAL--------EVYRRMVSEGLKP 225

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
            +  Y+ L+    K    E  + L  +M   G  PN  T+   IR      +ID+A E+ 
Sbjct: 226 SLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIF 285

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           R+M +   G P   +YT +I ALC AG++  A++   ++   G  P +  Y  + D  N
Sbjct: 286 RRMDDEGCG-PDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFN 343



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 107/297 (36%), Gaps = 67/297 (22%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T S   L+    +   V  AL  F +M    C+PDV  YN VI  L +    N A +   
Sbjct: 612 TISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFH 671

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTG------------CRKAIRRRIWE------ 270
           Q++       PD  T   L+    K G Q G             R  + R  WE      
Sbjct: 672 QLKKS---MHPDHVTICTLLPGLVKCG-QIGDAISIARDFMYQVRFRVNRSFWEDLMGGT 727

Query: 271 --------------------------------------ANHLFRLMLFK------GFVPD 286
                                                    L+   +F       G  P 
Sbjct: 728 LVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPT 787

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           + +YNCLI    + +  E+A +LF DM   GC P+  T+N  +  +    +I +  E+ +
Sbjct: 788 LASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYK 847

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +M +     P + +Y  +I +L ++  + +A DF  +LV     P   TY  + D L
Sbjct: 848 EMIS-RRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGL 903



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 69/155 (44%), Gaps = 13/155 (8%)

Query: 171  SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
            S T L+  L   G V+EAL  F  +K     PD  AYN +IN L +     +A  L  +M
Sbjct: 965  SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM 1024

Query: 231  ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
               G    PD+YTY  L+ +    GM           + +A  ++  +   G  PDV  Y
Sbjct: 1025 RNRGI--VPDLYTYNSLMLNLGLAGM-----------VEQAKRMYEELQLAGLEPDVFTY 1071

Query: 291  NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            N LI G   +   E A  ++ +M   GC PN  TY
Sbjct: 1072 NALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTY 1106



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 204 VYAYNVVINALCRVGNF--NKARFLLE-QMELPGFRCPPDVYTYTILIS-SYCKYGMQTG 259
           ++A  +V+N +CR  +F     R L + + EL  ++   D +T  + IS +   Y    G
Sbjct: 738 IFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIF-DKFTKKLGISPTLASYNCLIG 796

Query: 260 CRKAIR--RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
               +    + W+   LF+ M   G  PD   +N L+    K+ +I    EL+ +M  + 
Sbjct: 797 ELLEVHYTEKAWD---LFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRR 853

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
           C P+ +TYN  I   +  N +DKA++    + + +   PT  +Y P+I  L + GR+ EA
Sbjct: 854 CKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR-PTPRTYGPLIDGLAKVGRLEEA 912

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
                E+ D G  P    + ++ +      +        ++ + +GI
Sbjct: 913 MRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGI 959


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 122/251 (48%), Gaps = 18/251 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L DM  R     V T ++  LI  L ++G++ +A      M +   RPD+  +N +++ 
Sbjct: 275 LLCDMVDRNVNLNVYTYNI--LIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSG 332

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C   +  +AR L +     G    PDV++Y ILI  YCK             RI EA  
Sbjct: 333 YCLYNDVVEARKLFDTFAECGI--TPDVWSYNILIIGYCK-----------NNRIDEALS 379

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF  M +K   P++V Y+ LIDG CK+ RI  A ELF  ++  G  PN +TYN  +    
Sbjct: 380 LFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALC 439

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
            +  +DKAIE+   M     G+ P  SSY  +I+  C++ R+ EA +   E+     VP 
Sbjct: 440 KIQLVDKAIELFNLM--FERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPD 497

Query: 393 EYTYKLVCDAL 403
             TY  + D L
Sbjct: 498 SVTYNCLIDGL 508



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 14/224 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EA   F    +    PDV++YN++I   C+    ++A  L  +M     +  P++ TY
Sbjct: 339 VVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYK--KLAPNIVTY 396

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           + LI   CK G           RI  A  LF  +   G  P+V+ YN ++D  CK   ++
Sbjct: 397 SSLIDGLCKSG-----------RISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVD 445

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +A+ELF+ M ++G  PN  +YN  I  Y     ID+A+ +  +M   N  VP S +Y  +
Sbjct: 446 KAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNL-VPDSVTYNCL 504

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           I  LC++GR+  A +    + DGG      TY ++ DA +  + 
Sbjct: 505 IDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSKIQH 548



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 90/174 (51%), Gaps = 16/174 (9%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
            +VT SS   LI  L + G ++ A   F  +      P+V  YN++++ALC++   +KA 
Sbjct: 392 NIVTYSS---LIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAI 448

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            L   M   G    P+V +Y ILI+ YCK            +RI EA +LF  M  +  V
Sbjct: 449 ELFNLMFERGL--TPNVSSYNILINGYCK-----------SKRIDEAMNLFEEMHRRNLV 495

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           PD V YNCLIDG CK+ RI  A ELF+ M+  G   + +TYN     +S +  +
Sbjct: 496 PDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSKIQHV 549



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 102/212 (48%), Gaps = 14/212 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A+A F R+      P V  +N+++ ++ ++ ++  A  L +QM L G    P + T 
Sbjct: 59  IDDAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGI--TPSIVTL 116

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           +ILI+ YC  G            +  A  +  ++L +G+  + +    ++ G C    + 
Sbjct: 117 SILINCYCHLG-----------HMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVR 165

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +ALE  D +  +G + + VTY + I     +    +A E++ KM+      P    Y  I
Sbjct: 166 KALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEG-QVVRPNVVIYNMI 224

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +  LC+ G V EARD  +++V  G  P  +TY
Sbjct: 225 VDGLCKDGLVTEARDLYSDVVGRGIDPDVFTY 256



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 102/243 (41%), Gaps = 20/243 (8%)

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           K M  RG    + T S+  LI      G +  A +    + +   + +      ++  LC
Sbjct: 102 KQMGLRGITPSIVTLSI--LINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLC 159

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
             G   KA    + +   GF    D  TY  LI+  CK G+             EA  L 
Sbjct: 160 INGEVRKALEFHDSVVAQGFLL--DEVTYGTLINGLCKIGLTR-----------EAFELL 206

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             M  +   P+VV YN ++DG CK   +  A +L+ D+  +G  P+  TY   I  +  +
Sbjct: 207 HKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGL 266

Query: 336 NEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
            +  +   ++  M  +N+N  V T   Y  +I ALC+ G + +A D    +++ G  P  
Sbjct: 267 GQWREVTRLLCDMVDRNVNLNVYT---YNILIDALCKKGMLGKAHDMRNLMIERGQRPDL 323

Query: 394 YTY 396
            T+
Sbjct: 324 VTF 326


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 134/292 (45%), Gaps = 18/292 (6%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           TC  +  +  + N +K  W   ++M +      + T ++  +I +L  EG   +A     
Sbjct: 184 TCNSLLSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNI--MINILCREGKWKKAKDFIG 241

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            M+ +  +P+V  YN VIN  C  G F  A  + + M+    +  PD YTY   IS  CK
Sbjct: 242 HMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLK--PDCYTYNSFISRLCK 299

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                       RRI EA+ +   +L  G VP+ V YN LIDGCC    +++A    D+M
Sbjct: 300 -----------ERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEM 348

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
             +G + +  TYN  I    +   I++A +M+++M+    GV P   +Y   I+  C  G
Sbjct: 349 MNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMR--EKGVEPDVVTYNIQINGYCRCG 406

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
              +A     E+V+    P   TY  + D        S  ++  +K I++G+
Sbjct: 407 NAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGM 458



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 20/243 (8%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A   +  M +   +  +  +N++IN LCR G + KA+  +  ME+ G +  P+V TY  +
Sbjct: 201 AWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVK--PNVVTYNTV 258

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I+ YC           +R +   A+ +F+ M  K   PD   YN  I   CK  RIE A 
Sbjct: 259 INGYC-----------LRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEAS 307

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIH 366
            +   + + G +PN VTYN+ I       ++DKA     +M  +N G+  S  +Y  +IH
Sbjct: 308 GVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEM--MNRGIVASVFTYNLLIH 365

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRIRD 422
           AL    R+ EA D + E+ + G  P   TY +     C   NA +  SL D+ + K IR 
Sbjct: 366 ALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRP 425

Query: 423 GIE 425
            +E
Sbjct: 426 TVE 428



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 125/262 (47%), Gaps = 16/262 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + +  +   LI  L  E  + EA      M++    PDV  YN+ IN  CR GN  KA
Sbjct: 352 GIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKA 411

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L ++M     R  P V TYT LI  + K           R R+ EA   F+  + +G 
Sbjct: 412 LSLFDEMVEKNIR--PTVETYTSLIDVFGK-----------RNRMSEAEEKFKKSIKEGM 458

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           +PD++ +N LIDG C    I+RA +L  +M+    +P+ VT+N+ ++ Y    ++++A +
Sbjct: 459 LPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKK 518

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           ++ +M+    G+ P   SY  +I    + G + +A +   E++  G  P   TY  +   
Sbjct: 519 LLDEMKE--RGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQG 576

Query: 403 LNAAEEPSLLDDGLRKRIRDGI 424
            +   E    ++ LR+    GI
Sbjct: 577 YSKIGEADHAEELLREMQSKGI 598



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 18/239 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + R  N K       +M  +     V T   T LI V G+   ++EA   F +  +    
Sbjct: 402 YCRCGNAKKALSLFDEMVEKNIRPTVET--YTSLIDVFGKRNRMSEAEEKFKKSIKEGML 459

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  +N +I+  C  GN ++A  LL++M+    +  PD  T+  L+  YC+        
Sbjct: 460 PDIIMFNALIDGHCVNGNIDRAFQLLKEMD--NAKVVPDEVTFNTLMQGYCR-------- 509

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               R++ EA  L   M  +G  PD ++YN LI G  K   ++ ALE+FD+M   G  P 
Sbjct: 510 ---ERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPT 566

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
            +TYN+ I+ YS + E D A E++R+MQ  + G+ P  S+Y  +I A+     ++E  D
Sbjct: 567 LLTYNALIQGYSKIGEADHAEELLREMQ--SKGITPDDSTYLYVIEAMKTNDDLVENDD 623



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 14/215 (6%)

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           +G +++A A    M        V+ YN++I+AL       +A  ++++M   G    PDV
Sbjct: 335 KGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVE--PDV 392

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            TY I I+ YC+ G     +KA+         LF  M+ K   P V  Y  LID   K  
Sbjct: 393 VTYNIQINGYCRCG---NAKKALS--------LFDEMVEKNIRPTVETYTSLIDVFGKRN 441

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
           R+  A E F    K+G +P+ + +N+ I  + V   ID+A +++++M N    VP   ++
Sbjct: 442 RMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAK-VVPDEVTF 500

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             ++   C   +V EA+  L E+ + G  P   +Y
Sbjct: 501 NTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISY 535


>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
 gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
          Length = 504

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 132/259 (50%), Gaps = 28/259 (10%)

Query: 144 RGNNVKGLWDFLKDM--SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM-KQFRC 200
           R  +++  ++ +K+M  +R     LVT S+   LI  L E G + EA+  F  M  +   
Sbjct: 202 RNGDLQAAFEVVKEMKSARVSYPNLVTYST---LIGGLCENGKLKEAIEFFEEMVSKDNI 258

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD   YN++IN  C+ G  ++AR +LE M+  G  C P+V+ Y++L++ YCK G     
Sbjct: 259 LPDALTYNILINGFCQRGKVDRARTILEFMKSNG--CSPNVFNYSVLMNGYCKEG----- 311

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+ EA  +F  +   G  PD ++Y  LI+  C+T R++ A EL   M  K C  
Sbjct: 312 ------RLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRA 365

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQ----NLNHGVPTSSSYTPIIHALCEAGRVLE 376
           + VT+N  +         D+A++M++K+      LN G     SY  +++ L + G + +
Sbjct: 366 DTVTFNVMLGGLCREGRFDEALDMVQKLPFEGFYLNKG-----SYRIVLNFLTQKGELRK 420

Query: 377 ARDFLAELVDGGSVPREYT 395
           A + L  +++ G VP   T
Sbjct: 421 ATELLGLMLNRGFVPHHAT 439



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 18/241 (7%)

Query: 173 TCLIKVLGEE----GLVNEALATFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLL 227
           TC+  +L +     G +  A      MK  R   P++  Y+ +I  LC  G   +A    
Sbjct: 190 TCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFF 249

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           E+M +      PD  TY ILI+ +C+ G           ++  A  +   M   G  P+V
Sbjct: 250 EEM-VSKDNILPDALTYNILINGFCQRG-----------KVDRARTILEFMKSNGCSPNV 297

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y+ L++G CK  R++ A E+F+++   G  P+ ++Y + I        +D+A E++++
Sbjct: 298 FNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQ 357

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           M++ +    T + +  ++  LC  GR  EA D + +L   G    + +Y++V + L    
Sbjct: 358 MKDKDCRADTVT-FNVMLGGLCREGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKG 416

Query: 408 E 408
           E
Sbjct: 417 E 417



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 130/303 (42%), Gaps = 23/303 (7%)

Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           RDPQ        A + ++ V     F HN  T   +    A+    + +   L  M+   
Sbjct: 61  RDPQH-------ALDIFNMVSEQQGFNHNHATYASIIQNLAKYKKFQAIDGVLHQMTY-- 111

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF-RCRPDVYAYNVVINALCRVGNFN 221
           +   V       L+K   +  +    L  FY +K   R +P + A +  +N L      +
Sbjct: 112 DTCKVHEGIFLNLMKHFSKSSMHERVLDMFYAIKSIVREKPSLKAISTCLNLLVESDRVD 171

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
            AR LL           P+   + IL+  +C+ G      + ++           +   +
Sbjct: 172 LARKLLVNAR-SKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKE----------MKSAR 220

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDM-NKKGCIPNRVTYNSFIRYYSVVNEIDK 340
              P++V Y+ LI G C+  +++ A+E F++M +K   +P+ +TYN  I  +    ++D+
Sbjct: 221 VSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDR 280

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A  ++  M++ N   P   +Y+ +++  C+ GR+ EA++   E+   G  P   +Y  + 
Sbjct: 281 ARTILEFMKS-NGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLI 339

Query: 401 DAL 403
           + L
Sbjct: 340 NCL 342


>gi|255660916|gb|ACU25627.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 484

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 139/281 (49%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F HN  T  ++  +  R   +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRDTHLKIIEILGRALKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 175 L-IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L I   G+ G+V E++  F +M++      + +Y+ +   + R G F  A+    +M   
Sbjct: 85  LMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ +LI  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVLIWGFFLSG-----------KVDTANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+GC +  +++ A + F +M  +   P  V+Y + I+ Y  V+++D A+ ++ +M+   +
Sbjct: 192 INGCYRVKKMDEAEKYFVEMKGRNIEPTVVSYTTLIKGYVSVDQVDDALRLVEEMK--GY 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC+AG++ EA+  L E+VD    P++
Sbjct: 250 GIKPNAITYSTLLPGLCDAGKMSEAQSILKEMVDKYIAPKD 290



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 100/239 (41%), Gaps = 31/239 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRALKLNHARCILLDMPKKGLEWDEDMWV--LMIDSYGKAGIVQESVKLFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N LI G   + +++ 
Sbjct: 109 LGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVLIWGFFLSGKVDT 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I     V ++D+A +   +M+  N   PT  SYT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGCYRVKKMDEAEKYFVEMKGRNIE-PTVVSYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRI 420
                  +V +A   + E+   G  P   TY      +CDA   +E  S+L + + K I
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCDAGKMSEAQSILKEMVDKYI 286



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  S T LIK       V++AL     MK +  +P+   Y+ ++  LC  G  ++A+ +L
Sbjct: 219 TVVSYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCDAGKMSEAQSIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS C+ G            +  A  + + M+      + 
Sbjct: 279 KEM-VDKYIAPKDNSIFMRLISSQCEAG-----------NLGAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGVLIENFCKAGQHDKAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L+  G
Sbjct: 362 QSTL-HMEP--SAYNPMIEYLCNNGQTAKAEALVRQLLKLG 399


>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 141/296 (47%), Gaps = 17/296 (5%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A  F+ W E+   F +N  +   +     +      +W+ + DM R+G   ++T  +   
Sbjct: 130 ALSFFKWAEKQKGFMYNTESYNALIDSLGKIKQFNMIWNLVNDMKRKG---VLTKETFAL 186

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           + +     G V EA+ TF +M++F  + +   +N +++ L +      A+ + ++M++  
Sbjct: 187 ISRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRR 246

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F   PD+ +YTIL+  + +            + + + + ++R M  +GF PDVV Y  LI
Sbjct: 247 F--VPDIKSYTILLEGWGQ-----------EKNLLKLDEVYREMKDEGFEPDVVTYGILI 293

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +  CK  + + A+ELF +M  K C P+   + + I     V  + +A+E  R+ +     
Sbjct: 294 NAYCKVRKYDDAIELFREMESKNCQPSPHIFCTLINGLGSVRRLSEALEFFRRSKASGFA 353

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
            P + +Y  ++ A C + R+ +A   + E+   G  P   TY ++   L  AE+ +
Sbjct: 354 -PETPTYNAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTT 408



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 53/272 (19%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           V+ + V  ++K L   G +  AL+ F +  KQ     +  +YN +I++L ++  FN    
Sbjct: 111 VSPALVLEVLKRLSNAGAL--ALSFFKWAEKQKGFMYNTESYNALIDSLGKIKQFNMIWN 168

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           L+  M+  G        T+ ++   Y + G           ++ EA + F  M   G   
Sbjct: 169 LVNDMKRKGVLTKE---TFALISRRYARSG-----------KVKEAMNTFEKMEKFGLKI 214

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKK----------------------------- 316
           +   +N L+D   K+ ++  A  +FD M  +                             
Sbjct: 215 ESTDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLLKLDEVY 274

Query: 317 ------GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
                 G  P+ VTY   I  Y  V + D AIE+ R+M++ N   P+   +  +I+ L  
Sbjct: 275 REMKDEGFEPDVVTYGILINAYCKVRKYDDAIELFREMESKN-CQPSPHIFCTLINGLGS 333

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             R+ EA +F       G  P   TY  V  A
Sbjct: 334 VRRLSEALEFFRRSKASGFAPETPTYNAVVGA 365



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 2/145 (1%)

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           KGF+ +  +YN LID   K  +      L +DM +KG +  + T+    R Y+   ++ +
Sbjct: 141 KGFMYNTESYNALIDSLGKIKQFNMIWNLVNDMKRKGVL-TKETFALISRRYARSGKVKE 199

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A+    KM+     +  S+ +  ++  L ++ +VL A++   ++     VP   +Y ++ 
Sbjct: 200 AMNTFEKMEKFGLKIE-STDFNRLLDTLIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILL 258

Query: 401 DALNAAEEPSLLDDGLRKRIRDGIE 425
           +     +    LD+  R+   +G E
Sbjct: 259 EGWGQEKNLLKLDEVYREMKDEGFE 283


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I+ + +EG+V+ A      ++     PDV +YN+++ AL   G + +   L+ +M    
Sbjct: 269 IIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKM--FS 326

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +C P+V TY+ILI++ C+ G           +I EA +L +LM  KG  PD  +Y+ LI
Sbjct: 327 EKCDPNVVTYSILITTLCRDG-----------KIEEAMNLLKLMKEKGLTPDAYSYDPLI 375

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              C+  R++ A+E  + M   GC+P+ V YN+ +       + D+A+E+  K+  +   
Sbjct: 376 AAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCS 435

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P SSSY  +  AL  +G  + A   + E++  G  P E TY  +   L
Sbjct: 436 -PNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCL 483



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 57/308 (18%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L++ L  +G   E      +M   +C P+V  Y+++I  LCR G   +A  LL+ M
Sbjct: 300 SYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLM 359

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  G    PD Y+Y  LI+++C+ G           R+  A      M+  G +PD+V Y
Sbjct: 360 KEKGL--TPDAYSYDPLIAAFCREG-----------RLDVAIEFLETMISDGCLPDIVNY 406

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF---------------------- 328
           N ++   CK  + ++ALE+F  + + GC PN  +YN+                       
Sbjct: 407 NTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMS 466

Query: 329 -------IRYYSVVN------EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
                  I Y S+++       +D+A E++  M++     P+  +Y  ++   C+A R+ 
Sbjct: 467 NGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFH-PSVVTYNIVLLGFCKAHRIE 525

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALN----AAEEPSLLDDGLRKRIRDGI-EYRFRQ 430
           +A + L  +V  G  P E TY ++ + +      AE   L +D +R    D I EY F++
Sbjct: 526 DAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI---DAISEYSFKR 582

Query: 431 VMKVKPIM 438
           + +  P++
Sbjct: 583 LHRTFPLL 590



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 27/220 (12%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----- 255
           +PDV+AYN +IN  C++   + A  +L++M    F   PD  TY I+I S C  G     
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDF--SPDTVTYNIMIGSLCSRGKLDLA 212

Query: 256 -------MQTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                  +   C+  +               + EA  L   ML +G  PD+  YN +I G
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            CK   ++RA E+  ++  KG  P+ ++YN  +R      + ++  ++M KM +     P
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFS-EKCDP 331

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
              +Y+ +I  LC  G++ EA + L  + + G  P  Y+Y
Sbjct: 332 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSY 371



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 15/204 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            F R   +    +FL+ M    +G L    +   ++  L + G  ++AL  F ++ +  C
Sbjct: 377 AFCREGRLDVAIEFLETMI--SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGC 434

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+  +YN + +AL   G+  +A  ++ +M   G    PD  TY  +IS  C+ GM    
Sbjct: 435 SPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGI--DPDEITYNSMISCLCREGM---- 488

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  + EA  L   M    F P VV YN ++ G CK +RIE A+ + + M   GC P
Sbjct: 489 -------VDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRP 541

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEM 344
           N  TY   I          +A+E+
Sbjct: 542 NETTYTVLIEGIGFAGYRAEAMEL 565



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 15/185 (8%)

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           CR GN+ ++  LLE M   G+   PDV   T LI  +              R I +A  +
Sbjct: 100 CRSGNYIESLHLLETMVRKGYN--PDVILCTKLIKGFFTL-----------RNIPKAVRV 146

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
             + L K   PDV AYN LI+G CK  RI+ A  + D M  K   P+ VTYN  I     
Sbjct: 147 MEI-LEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCS 205

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
             ++D A++++ ++ + ++  PT  +YT +I A    G V EA   + E++  G  P  +
Sbjct: 206 RGKLDLALKVLNQLLS-DNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMF 264

Query: 395 TYKLV 399
           TY  +
Sbjct: 265 TYNTI 269


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 113/262 (43%), Gaps = 46/262 (17%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    +EG   EA + F  M      PDV  Y+ +I+ L R G    A  LL +   
Sbjct: 590 TALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLE 649

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PDV+TY  +IS +CK G            I +A  L   M  KG  P+++ YN 
Sbjct: 650 KGL--VPDVFTYNSIISGFCKQG-----------GIGKAFQLHEYMCQKGISPNIITYNA 696

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM---- 348
           LI+G CK   IERA ELFD +  KG   N VTY + I  Y     + KA  +  +M    
Sbjct: 697 LINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKG 756

Query: 349 -----------------------------QNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
                                        +++  G  ++SS   ++   C++G+V+EA  
Sbjct: 757 VPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQ 816

Query: 380 FLAELVDGGSVPREYTYKLVCD 401
            L ++VD    P   TY ++ D
Sbjct: 817 LLEDMVDKHVKPDHVTYTILID 838



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 128/288 (44%), Gaps = 22/288 (7%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R   ++G  + L +   +G    V T     +I    ++G + +A      M Q    P+
Sbjct: 633 RNGKLQGAMELLSEFLEKGLVPDVFT--YNSIISGFCKQGGIGKAFQLHEYMCQKGISPN 690

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +  YN +IN LC+ G   +AR L +   +PG     +  TY  +I  YCK G      KA
Sbjct: 691 IITYNALINGLCKAGEIERARELFDG--IPGKGLAHNAVTYATIIDGYCKSG---NLSKA 745

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
            R        LF  M  KG  PD   Y+ LIDGC K    E+AL LF +  +KG   +  
Sbjct: 746 FR--------LFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKG-FASTS 796

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           + N+ +  +    ++ +A +++  M +  H  P   +YT +I   C+ G + EA  F  +
Sbjct: 797 SLNALMDGFCKSGKVIEANQLLEDMVD-KHVKPDHVTYTILIDYHCKTGFLKEAEQFFVD 855

Query: 384 LVDGGSVPREYTYKLVCDALNAA----EEPSLLDDGLRKRIR-DGIEY 426
           +     +P   TY  +    N A    E  +L D+ + K I  DG+ +
Sbjct: 856 MQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTW 903



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 112/267 (41%), Gaps = 53/267 (19%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LIK   +EG   EA+     M +   +PDV  YN VI  LC+     +A+  L +M  
Sbjct: 485 TTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIE 544

Query: 233 PGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
            G +  P+VYTY  LI  YCK G MQ             A+  F+ ML  G  P+ V   
Sbjct: 545 RGLK--PNVYTYGALIHGYCKSGEMQV------------ADRYFKEMLGCGIAPNDVVCT 590

Query: 292 CLIDGCCK------------------------TY-----------RIERALELFDDMNKK 316
            LIDG CK                        TY           +++ A+EL  +  +K
Sbjct: 591 ALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEK 650

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVL 375
           G +P+  TYNS I  +     I KA ++   M     G+ P   +Y  +I+ LC+AG + 
Sbjct: 651 GLVPDVFTYNSIISGFCKQGGIGKAFQLHEYM--CQKGISPNIITYNALINGLCKAGEIE 708

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDA 402
            AR+    +   G      TY  + D 
Sbjct: 709 RARELFDGIPGKGLAHNAVTYATIIDG 735



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 112/255 (43%), Gaps = 20/255 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI     +G   EA      M     + +++ YN ++  +C+ G+  KA  LL +M +
Sbjct: 345 TALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIM 404

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  PD  TY  +I  Y K            +       L   M     VP   AY C
Sbjct: 405 VGIK--PDTQTYNNMIEGYLK-----------EQNTSRVKDLLSEMKKSNLVP--TAYTC 449

Query: 293 --LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             +I+G C+   IE A  +F+ M   G  PN V Y + I+ +       +A+ +++ M  
Sbjct: 450 GMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDK 509

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
              GV P    Y  +I  LC++ ++ EA+D+L E+++ G  P  YTY  +      + E 
Sbjct: 510 --KGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEM 567

Query: 410 SLLDDGLRKRIRDGI 424
            + D   ++ +  GI
Sbjct: 568 QVADRYFKEMLGCGI 582



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 143/354 (40%), Gaps = 49/354 (13%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
            ++A  F+   +R   F    + C  +     + N ++  W F   M       L    +
Sbjct: 182 FDEAVSFFLGAKRN-GFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEAN--VLHDVYT 238

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
            T LI      G   E     + M++  C P +  YNVVI  LCR G  ++A  L + M+
Sbjct: 239 YTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMD 298

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR---------------------RIWE 270
             G     DV+TY+ILI  + K    T  +  +                       R  +
Sbjct: 299 KKGL--VADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGD 356

Query: 271 ANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           +   FR+   ML +G   ++  YN L+ G CK   +E+A  L ++M   G  P+  TYN+
Sbjct: 357 SGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNN 416

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I  Y       +  +++ +M+  N  VPT+ +   II+ LC  G + +A      +V  
Sbjct: 417 MIEGYLKEQNTSRVKDLLSEMKKSNL-VPTAYTCGMIINGLCRHGSIEDASRVFEIMVSL 475

Query: 388 GSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHK 441
           G  P    Y  +                ++  +++G   RF++ +++  +M  K
Sbjct: 476 GVKPNAVIYTTL----------------IKGHVQEG---RFQEAVRILKVMDKK 510



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 100/239 (41%), Gaps = 51/239 (21%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            MK+    P  Y   ++IN LCR G+   A  + E M   G +  P+   YT LI  + +
Sbjct: 436 EMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVK--PNAVIYTTLIKGHVQ 493

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           R  EA  + ++M  KG  PDV+ YN +I G CK+ ++E A +   +M
Sbjct: 494 EG-----------RFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEM 542

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV------------------ 355
            ++G  PN  TY + I  Y    E+  A    ++M  L  G+                  
Sbjct: 543 IERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEM--LGCGIAPNDVVCTALIDGYCKEG 600

Query: 356 ------------------PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
                             P   +Y+ +IH L   G++  A + L+E ++ G VP  +TY
Sbjct: 601 STTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTY 659


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 118/235 (50%), Gaps = 15/235 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           G +V   + T ++K L  +   ++A+     RM Q  C P+V++YN+++  LC      +
Sbjct: 121 GFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQE 180

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  LL+ M   G  CPPDV +YT +I+ + K G            + +A   +  ML +G
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG-----------DLDKAYGTYHEMLDRG 229

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
            +P+VV Y+ +I   CK   +++A+E+   M K G +PN  TYNS +  Y    +  +AI
Sbjct: 230 ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAI 289

Query: 343 EMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             ++KM   + GV P   +Y  ++  LC+ GR  EAR     +   G  P   TY
Sbjct: 290 GFLKKMH--SDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 137/279 (49%), Gaps = 23/279 (8%)

Query: 141 VFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
            +A+   V         M ++G N + VT  +V   I +L + G V +A+  F +M   R
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV---IGILCKSGRVEDAMRYFEQMIDER 439

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             P    YN +I++LC    ++KA+ L+ +M   G  C   ++ +  +I S+CK G    
Sbjct: 440 LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI-CLDTIF-FNSIIDSHCKEG---- 493

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  R+ E+  LF LM+  G  PD++ Y+ LIDG C   +++ A +L   M   G  
Sbjct: 494 -------RVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+ VTYN+ I  Y  ++ ++ A+ + R+M+  + GV P   +Y  I+  L +  R   A+
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFREME--SSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           +    + + G+     TY ++   L+   + +L D+ LR
Sbjct: 605 ELYVGITESGTQLELSTYNII---LHGLCKNNLTDEALR 640



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 105/223 (47%), Gaps = 14/223 (6%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG V E+   F  M +   +PD+  Y+ +I+  C  G  ++A  LL  M   G +  PD
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK--PD 548

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
             TY  LI+ YCK             R+ +A  LFR M   G  PD++ YN ++ G  +T
Sbjct: 549 CVTYNTLINGYCKI-----------SRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R   A EL+  + + G      TYN  +      N  D+A+ M + +   +  + T  +
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLET-RT 656

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  +I AL + GR  EA+D  A L   G VP   TY L+ + L
Sbjct: 657 FNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 135/317 (42%), Gaps = 34/317 (10%)

Query: 112 LNKATEFYH-WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           L+KA   YH  ++R      N +T   +     +   +    + L  M +  NG +    
Sbjct: 215 LDKAYGTYHEMLDR--GILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK--NGVMPNCR 270

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +   ++      G   EA+    +M      PDV  YN +++ LC+ G   +AR + + M
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG------------MQTG------------CRKAIRR 266
              G +  P++ TY  L+  Y   G            ++ G            C  A + 
Sbjct: 331 TKRGLK--PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++ +A  +F  M  +G  PD V Y  +I   CK+ R+E A+  F+ M  +   P  + YN
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYN 448

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELV 385
           S I    + ++ DKA E++ +M  L+ G+   +  +  II + C+ GRV+E+      +V
Sbjct: 449 SLIHSLCIFDKWDKAKELILEM--LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 386 DGGSVPREYTYKLVCDA 402
             G  P   TY  + D 
Sbjct: 507 RIGVKPDIITYSTLIDG 523



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 17/204 (8%)

Query: 203 DVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           D  A+  ++  LC     + A   +L +M   G  C P+V++Y IL+   C         
Sbjct: 125 DAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLG--CIPNVFSYNILLKGLCD-------- 174

Query: 262 KAIRRRIWEANHLFRLMLFKG--FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                R  EA  L ++M   G    PDVV+Y  +I+G  K   +++A   + +M  +G +
Sbjct: 175 ---DNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN VTY+S I        +DKA+E++  M   N  +P   +Y  I+H  C +G+  EA  
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVK-NGVMPNCRTYNSIVHGYCSSGQPKEAIG 290

Query: 380 FLAELVDGGSVPREYTYKLVCDAL 403
           FL ++   G  P   TY  + D L
Sbjct: 291 FLKKMHSDGVEPDVVTYNSLMDYL 314



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 17/227 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  Y +++ + C  G  +     L  +   GF    D   +T ++   C         
Sbjct: 89  PNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGF--IVDAIAFTPMLKGLC--------- 137

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG--CI 319
            A +R     + + R M   G +P+V +YN L+ G C   R + ALEL   M   G  C 
Sbjct: 138 -ADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCP 196

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+ V+Y + I  +    ++DKA     +M  L+ G+ P   +Y+ II ALC+A  + +A 
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEM--LDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           + L  +V  G +P   TY  +     ++ +P      L+K   DG+E
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVE 301



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 87/260 (33%), Gaps = 63/260 (24%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++EA      M     +PD   YN +IN  C++     A  L  +ME  G    PD+ 
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV--SPDII 585

Query: 243 T-----------------------------------YTILISSYCKYGM--------QTG 259
           T                                   Y I++   CK  +        Q  
Sbjct: 586 TYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645

Query: 260 CRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           C   ++                 R  EA  LF  +   G VPDV  Y+ + +   +   +
Sbjct: 646 CLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLL 705

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           E   +LF  M + GC  N    NS +R      +I +A   +  +   +  +  S++   
Sbjct: 706 EELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTA--S 763

Query: 364 IIHALCEAGRVLEARDFLAE 383
           +   L   G+  E   FL E
Sbjct: 764 LFLDLLSGGKYQEYHRFLPE 783


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 125/239 (52%), Gaps = 11/239 (4%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  ++ +S   L+  L + G + +    +  M + R  P + ++N+VIN LC+VG  NKA
Sbjct: 123 GLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKA 182

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             ++E M++ G     +V TY  LI  YCK G + G       ++++A+ + + M   G 
Sbjct: 183 GDIIEDMKVRGV--SANVITYNTLIDGYCKMG-KIG-------KMYKADAILKEMRADGI 232

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+ V +N LIDG CK   +  A+++F +MN++G  PN VTYNS I       ++++A  
Sbjct: 233 CPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATA 292

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +  +M N +   P   ++  +++  C+   V +A +   ++   G  P   TY ++ DA
Sbjct: 293 LRDQMVN-SCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDA 350



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 138/308 (44%), Gaps = 51/308 (16%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           NE+T   +   F +  NV        +M+R+G    V T     LI  L   G VNEA A
Sbjct: 235 NEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVT--YNSLINGLCNNGKVNEATA 292

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
              +M     +P++  +N ++N  C+     +A  L + M   G    P+V TY ILI +
Sbjct: 293 LRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGI--TPNVTTYNILIDA 350

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK----------- 299
           YCK              + +A  L+R+ML KG  PDV  YNCLI G C+           
Sbjct: 351 YCK-----------DENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLV 399

Query: 300 -------------TYRI-----------ERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
                        TY I           ++AL L D+M +KG  P+++TYN+ I  Y   
Sbjct: 400 SEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKE 459

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
             +  A+ +  +M+ +   +   ++Y  +I   C+  ++ +A   L E+++ G +P   T
Sbjct: 460 GNLRAALNLRSQMEKVGR-LANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMT 518

Query: 396 YKLVCDAL 403
           Y++V + +
Sbjct: 519 YEIVTEEM 526



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 71/140 (50%), Gaps = 6/140 (4%)

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           I +   +++ M+ +   P ++++N +I+G CK  ++ +A ++ +DM  +G   N +TYN+
Sbjct: 144 IGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNT 203

Query: 328 FIRYYSVVNEIDK---AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAE 383
            I  Y  + +I K   A  ++++M+    G+ P   ++  +I   C+   V  A    AE
Sbjct: 204 LIDGYCKMGKIGKMYKADAILKEMRA--DGICPNEVTFNILIDGFCKDKNVSAAMKVFAE 261

Query: 384 LVDGGSVPREYTYKLVCDAL 403
           +   G  P   TY  + + L
Sbjct: 262 MNRQGVKPNVVTYNSLINGL 281


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 166/388 (42%), Gaps = 67/388 (17%)

Query: 74  HRTPLRQRILKKEAYNIANNVLVLGPA-----AYRDPQKVTLGLNK------ATEFYHWV 122
           H + +++  +  E + +   +  + PA      +  P+ VT  +           F+ W 
Sbjct: 23  HTSAIQETSISDEVFTVIKTMNPMEPALEPMVPFLSPKIVTSIIQNPPNPQLGFRFFIWA 82

Query: 123 ERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL-VTTSSVTCLIKVLGE 181
             F  F   E +C  +  +    N   GL  + + +    NG + V   +   LIKV  +
Sbjct: 83  SNFKRFRAWE-SCDLITDLLINQN---GLELYCQTLEALKNGGIKVHNDAFFVLIKVYLK 138

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
            GL ++A+ TF  M+ F C PDVY YN++++ L +      A  +  +M      C P+V
Sbjct: 139 MGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMM--KLNCLPNV 196

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            T++ILI   CK G            + +A HLF  M  +G +PD   Y  +I G C++ 
Sbjct: 197 ATFSILIDGLCKSG-----------NVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSK 245

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN----------- 350
           R++ A  LFD M   G  P+ VT N+ +  + +++ +D+A  ++R  +            
Sbjct: 246 RVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYS 305

Query: 351 -LNHGV----------------------PTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            L  G+                      P    YT ++  L EAG+V +A + L E+ + 
Sbjct: 306 CLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTES 365

Query: 388 GSVPREYTYKLV----CDALNAAEEPSL 411
           G VP    Y ++    CD    +E  SL
Sbjct: 366 GVVPDTVCYNVLIKGFCDMGLLSEARSL 393



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 115/253 (45%), Gaps = 25/253 (9%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G ++     +CLI+ L       +    + +M +   +PDVY Y +++  L   G    
Sbjct: 295 DGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRD 354

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  LL +M   G    PD   Y +LI  +C  G+ +  R +++  I   +          
Sbjct: 355 ALELLNEMTESG--VVPDTVCYNVLIKGFCDMGLLSEAR-SLQLEISRHDCF-------- 403

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+V  Y+ LI G C+      A E+F++M K GC P+ VT+NS I       +++KA 
Sbjct: 404 --PNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAH 461

Query: 343 EMMRKMQ---------NLNHG---VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            +  KM+          L+ G   V  S+S   ++  LC++G + +A   L +L D G  
Sbjct: 462 LLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDA 521

Query: 391 PREYTYKLVCDAL 403
           P  YTY ++ +  
Sbjct: 522 PGIYTYNILVNGF 534



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 87/223 (39%), Gaps = 57/223 (25%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + LI  +   GL  +A   F  M++  C P    +N +I+ LC+ G   KA  L  +M
Sbjct: 408 TYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKM 467

Query: 231 EL-------------------------------------PGFRC---------PPDVYTY 244
           E+                                       +R           P +YTY
Sbjct: 468 EIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTY 527

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            IL++ +CK G   G  K           LFR M FKG  PD V Y  LI+G  +  R E
Sbjct: 528 NILVNGFCKLGNFNGAYK-----------LFREMQFKGLSPDTVTYGTLINGLLRFQREE 576

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
            A ++FD M K GC P+   Y + + +     E+ +A  +  K
Sbjct: 577 DAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLK 619



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 105/273 (38%), Gaps = 62/273 (22%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T ++K L E G V +AL     M +    PD   YNV+I   C +G  ++AR L  Q+E+
Sbjct: 340 TIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSL--QLEI 397

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
               C P+V TY+ILIS  C+ G+             +A  +F  M   G  P  V +N 
Sbjct: 398 SRHDCFPNVKTYSILISGMCRNGLTR-----------DAQEIFNEMEKLGCYPSAVTFNS 446

Query: 293 LIDGCCKTYRIERALELFDDMN-------------------------------------- 314
           LIDG CKT ++E+A  LF  M                                       
Sbjct: 447 LIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIH 506

Query: 315 ----------KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
                       G  P   TYN  +  +  +   + A ++ R+MQ      P + +Y  +
Sbjct: 507 KAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQ-FKGLSPDTVTYGTL 565

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           I+ L    R  +A     ++   G  P    Y+
Sbjct: 566 INGLLRFQREEDAYKVFDQMEKNGCTPDAAVYR 598



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 23/221 (10%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           +G   ++ ++S+  +++ L + GL+++A     ++      P +Y YN+++N  C++GNF
Sbjct: 481 QGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNF 540

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           N A  L  +M+  G    PD  TY  LI+   ++           +R  +A  +F  M  
Sbjct: 541 NGAYKLFREMQFKGL--SPDTVTYGTLINGLLRF-----------QREEDAYKVFDQMEK 587

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  PD   Y  ++   C+   + RA  L+    +           +   Y+    E++K
Sbjct: 588 NGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIRSQEDEAIKAIEGYFE-KQEVEK 646

Query: 341 AI----EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
           A+    EM  K+ + + G      Y   +  LC+  RV EA
Sbjct: 647 AVRGLLEMDFKLNDFDLG-----PYAIWLIGLCQTRRVGEA 682


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 123/269 (45%), Gaps = 22/269 (8%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  + T +   +I  + ++G V+E L    ++  F C  D+ +YN V+  LC    +   
Sbjct: 181 GSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDV 240

Query: 224 RFLLEQM--------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
             L+++M        ++    C PD+  Y  +I   CK G               AN + 
Sbjct: 241 EELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHE-----------VANEIL 289

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             M   G  P+VV YN ++ G C   R E+A EL  +M +K C  + VT+N  + ++   
Sbjct: 290 SRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQN 349

Query: 336 NEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
             +D+ IE++ +M  L HG +P   +YT +I+  C+ G + EA   L  +   G  P   
Sbjct: 350 GLVDRVIELLEQM--LEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTI 407

Query: 395 TYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           +Y +V   L + E     ++ + + I+ G
Sbjct: 408 SYTIVLKGLCSTERWVDAEELMSRMIQQG 436



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 161/362 (44%), Gaps = 31/362 (8%)

Query: 82  ILKKEAYNIANNVLVLGPAAYRDPQKVTL-----GLNKATEFYHWVERFFDFFH-----N 131
           I K+  + +AN +L   P+    P  V       G+  A  +    E   + +      +
Sbjct: 276 ICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLD 335

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           ++T   +   F +   V  + + L+ M   G    V T   T +I    +EGL++EA+  
Sbjct: 336 DVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVIT--YTTVINGFCKEGLIDEAVML 393

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              M    C+P+  +Y +V+  LC    +  A  L+ +M   G  C P+  T+  +I+  
Sbjct: 394 LKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQG--CLPNPVTFNTIINFL 451

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK G+           + +A  L + ML  G  PD+++Y+ +IDG  K  + E ALEL +
Sbjct: 452 CKKGL-----------VEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLN 500

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
            M  KG  PN +TY+S     +    IDK I+M   +Q+       +  Y  +I +LC+ 
Sbjct: 501 VMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIR-SDAVLYNAVISSLCKR 559

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALNA----AEEPSLLDDGLRKR-IRDGIEY 426
                A DFLA +V  G +P E TY  +   L +     E   LL +   +R +R  +  
Sbjct: 560 RETDLAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSELCSRRAVRKHLTR 619

Query: 427 RF 428
           RF
Sbjct: 620 RF 621



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 17/182 (9%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V  YN ++   CRVG    AR L   + +     PP+ YTY  ++   C  G        
Sbjct: 84  VVDYNAMVAGYCRVGQVEAARRLAAAVPV-----PPNAYTYFPVVRGLCGRG-------- 130

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              RI +A  +   M  +  VP    Y+ +I+  C++     AL + + ++ KG   +  
Sbjct: 131 ---RIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTG 187

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
             N  I        +D+ +EM+RK+  L        SY  ++  LC A R  +  + + E
Sbjct: 188 NCNLVINAICDQGCVDEGLEMLRKLP-LFGCEADIVSYNAVLKGLCAAKRWGDVEELMDE 246

Query: 384 LV 385
           +V
Sbjct: 247 MV 248



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 22/215 (10%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+ Y Y  V+  LC  G    A  +L++M      C P    Y ++I S C+ G   G  
Sbjct: 114 PNAYTYFPVVRGLCGRGRIADALAVLDEMT--SRSCVPIPPMYHVIIESACRSG---GYS 168

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
            A+  R+ EA H       KG   D    N +I+  C    ++  LE+   +   GC  +
Sbjct: 169 SAL--RVLEALH------AKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEAD 220

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKM--------QNLNHG-VPTSSSYTPIIHALCEAG 372
            V+YN+ ++            E+M +M        Q   HG  P    Y  II  +C+ G
Sbjct: 221 IVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEG 280

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
               A + L+ +   G  P    Y  V   + +A+
Sbjct: 281 HHEVANEILSRMPSYGLKPNVVCYNTVLKGICSAD 315



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 15/167 (8%)

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           V  Y  +++ YC+ G     R              RL       P+   Y  ++ G C  
Sbjct: 84  VVDYNAMVAGYCRVGQVEAAR--------------RLAAAVPVPPNAYTYFPVVRGLCGR 129

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            RI  AL + D+M  + C+P    Y+  I           A+ ++  +      + T + 
Sbjct: 130 GRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLDTGNC 189

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
              +I+A+C+ G V E  + L +L   G      +Y  V   L AA+
Sbjct: 190 NL-VINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAK 235


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 145/301 (48%), Gaps = 30/301 (9%)

Query: 87  AYNIANNVLVLGPAAYRDPQKVTLGL--------NKATEFYHWVERFFDFFHNEMTCKEM 138
           A +I   +L LG     +P +VT+G         N+ ++    V++  +  +        
Sbjct: 139 ALSILGKMLKLG----YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 194

Query: 139 GIV--FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196
            I+    +   V   +DF K++ R+G    V T   T L+  L      ++A      M 
Sbjct: 195 AIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT--YTALVNGLCNSSRWSDAARLLSDMI 252

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
           + +  P+V  Y+ +++A  + G   +A+ L E+M        PD+ TY+ LI+  C    
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEM--VRMSIDPDIVTYSSLINGLC---- 306

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                  +  RI EAN +F LM+ KG + DVV+YN LI+G CK  R+E  ++LF +M+++
Sbjct: 307 -------LHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           G + N VTYN+ I+ +    ++DKA E   +M       P   +Y  ++  LC+ G + +
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGIS-PDIWTYNILLGGLCDNGELEK 418

Query: 377 A 377
           A
Sbjct: 419 A 419



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 14/210 (6%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M+    R D+Y +N+VIN  C     + A  +L +M   G+   PD  T   L++ +C+
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYE--PDRVTIGSLVNGFCR 167

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                      R R+ +A  L   M+  G+ PD+VAYN +ID  CKT R+  A + F ++
Sbjct: 168 -----------RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI 216

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            +KG  PN VTY + +      +    A  ++  M       P   +Y+ ++ A  + G+
Sbjct: 217 ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGK 275

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           VLEA++   E+V     P   TY  + + L
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVTYSSLINGL 305



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 119/294 (40%), Gaps = 38/294 (12%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L DM ++     V T S   L+    + G V EA   F  M +    PD+  Y+ +IN 
Sbjct: 247 LLSDMIKKKITPNVITYSA--LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------- 266
           LC     ++A  + + M   G  C  DV +Y  LI+ +CK        K  R        
Sbjct: 305 LCLHDRIDEANQMFDLMVSKG--CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLV 362

Query: 267 -----------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
                             + +A   F  M F G  PD+  YN L+ G C    +E+AL +
Sbjct: 363 SNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVI 422

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
           F+DM K+    + VTY + IR      ++++A  +   + +L    P   +YT ++  LC
Sbjct: 423 FEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL-SLKGLKPDIVTYTTMMSGLC 481

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTY---------KLVCDALNAAEEPSLLDD 414
             G + E      ++   G +  + T          +L+   L+    PSLL D
Sbjct: 482 TKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKD 535



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 109/219 (49%), Gaps = 16/219 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +N+A+  F  M + R  P +  +N +++A+ ++  ++    L ++ME+ G R   D+YT+
Sbjct: 66  LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIR--NDLYTF 123

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            I+I+ +C       C +     +  A  +   ML  G+ PD V    L++G C+  R+ 
Sbjct: 124 NIVINCFC------CCFQ-----VSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 172

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A+ L D M + G  P+ V YN+ I        ++ A +  ++++    G+ P   +YT 
Sbjct: 173 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER--KGIRPNVVTYTA 230

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +++ LC + R  +A   L++++     P   TY  + DA
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDA 269


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 139/282 (49%), Gaps = 19/282 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +G+ VK  + +  +M RR    L T S+   LI  L  EG ++EA      M      PD
Sbjct: 354 KGDLVKA-FGYRDEMVRRA--ILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPD 410

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              YN++IN  CR GN  KA  L ++M   G +  P + TYT LI    K          
Sbjct: 411 SITYNILINGYCRCGNAKKAFNLHDEMISKGIQ--PTLVTYTSLIYVLSK---------- 458

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
            R R+  A+ LF  ++ +G  PD++ +N LIDG C    ++RA  L  +M+K+  +P+ V
Sbjct: 459 -RNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEV 517

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           TYN+ ++      ++++A E++++M+    G+ P   SY  +I    + G + +A     
Sbjct: 518 TYNTLMQGRCREGKVEEARELLKEMK--RRGIRPDHISYNTLISGYSKRGDINDAFTIRD 575

Query: 383 ELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           E++  G  P   TY  +   L   ++  L ++ L++ +  GI
Sbjct: 576 EMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGI 617



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 117/238 (49%), Gaps = 26/238 (10%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           +  M + + +  VY +N++IN LC+ G   KA+  +  ME  G +  P+V TY  +I  Y
Sbjct: 224 YAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVK--PNVVTYNTVIHGY 281

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           C  G           R+  A  +  +M  +G  PD   Y  LI G CK  ++E A  + +
Sbjct: 282 CSRG-----------RVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILE 330

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI----EMMRKMQNLNHGVPTSSSYTPIIHA 367
            M + G +P  VTYN+ I  Y    ++ KA     EM+R+       +PT S+Y  +IHA
Sbjct: 331 KMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAI-----LPTVSTYNLLIHA 385

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIR 421
           L   G++ EA   + ++ D G VP   TY ++    C   NA +  +L D+ + K I+
Sbjct: 386 LFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQ 443



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 97/224 (43%), Gaps = 27/224 (12%)

Query: 129 FHNEMTCK----------EMGIVFARGNNVKGLWDFLKDMSRRGNG-ELVTTSSVTCLIK 177
            H+EM  K           +  V ++ N +K   D  + + R G   +L+       LI 
Sbjct: 433 LHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIM---FNALID 489

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
                G ++ A A    M +    PD   YN ++   CR G   +AR LL++M+  G R 
Sbjct: 490 GHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIR- 548

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            PD  +Y  LIS Y K G            I +A  +   ML  GF P ++ YN LI G 
Sbjct: 549 -PDHISYNTLISGYSKRG-----------DINDAFTIRDEMLSIGFNPTLLTYNALIQGL 596

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           CK  + + A EL  +M  KG  P+  TY S I     V++  +A
Sbjct: 597 CKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEA 640



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 1/112 (0%)

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           + ++ LI  CC+  R + A E FD M +KG +P   T+N+ +  +  +N+ +    +  +
Sbjct: 167 IVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAE 226

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           M  L     T  ++  +I+ LC+ G++ +A+DF+  + + G  P   TY  V
Sbjct: 227 MFRLKIK-STVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTV 277


>gi|356528212|ref|XP_003532699.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Glycine max]
          Length = 738

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 137/281 (48%), Gaps = 17/281 (6%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVT 173
           A +FY WVER   F H   T  ++  +  R + +      L D +R G     VT  +  
Sbjct: 102 ALQFYRWVERAGLFTHTPETTLKIVQILGRYSKLNHARCILFDDTRGGASRATVTEDAFV 161

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            LI   G  G+V E++  F +MK+      V +Y+ +   + R G +  A+     M   
Sbjct: 162 SLIDSYGRAGIVQESVKLFKKMKELGVDRTVKSYDALFKVILRRGRYMMAKRYYNAM--L 219

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
                P  +TY IL+     +GM    R     R +E       M  +G +PDVV YN L
Sbjct: 220 NESVEPTRHTYNILL-----WGMFLSLRLDTAVRFYED------MKSRGILPDVVTYNTL 268

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A +LF +M  +  +PN +++ + ++ Y    +ID A+++  +M+    
Sbjct: 269 INGYFRFKKVEEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGQIDDALKVFEEMKGC-- 326

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           GV P + +++ ++  LC+A ++ EARD L E+V+    P++
Sbjct: 327 GVKPNAVTFSTLLPGLCDAEKMAEARDVLGEMVERYIAPKD 367



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 97/262 (37%), Gaps = 39/262 (14%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S T ++K     G +++AL  F  MK    +P+   ++ ++  LC      +AR +L +M
Sbjct: 299 SFTTMLKGYVAAGQIDDALKVFEEMKGCGVKPNAVTFSTLLPGLCDAEKMAEARDVLGEM 358

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            +  +  P D   +  L+S  CK G            +  A  + + M+      +   Y
Sbjct: 359 -VERYIAPKDNAVFMKLMSCQCKAG-----------DLDAAGDVLKAMIRLSIPTEAGHY 406

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI+  CK    ++A +L D M     I   +       Y + + E++           
Sbjct: 407 GVLIENFCKANLYDKAEKLLDKM-----IEKEIVLRQKNAYETELFEME----------- 450

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                   S+Y  +I  LCE GR  +A  F  +L+  G         L+C         S
Sbjct: 451 -------PSAYNLMIGYLCEHGRTGKAETFFRQLMKKGVQDSVSFNNLICGHSKEGNPDS 503

Query: 411 LLDD----GLRKRIRDGIEYRF 428
             +     G R   RD   YR 
Sbjct: 504 AFEIIKIMGRRGVARDADSYRL 525


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 125/270 (46%), Gaps = 36/270 (13%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+   +   +++A+  F  M+Q    P+V  Y  VI+ LC+ G    A     QM   G
Sbjct: 301 LIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEG 360

Query: 235 FRCPPDVYTYTILISSYCKYG---------------------------MQTGCRKAIRRR 267
               PD+ T+T LI   C  G                           M + C++    R
Sbjct: 361 L--SPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEG---R 415

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + EA+  F  ++  G  PDVV+Y  LIDG C   +++ +++L   M   G  P+ VTY++
Sbjct: 416 VLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSA 475

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            +  Y     +D A+ + R+M + +   P + +Y  I+H L  AGRV+ AR+F  ++VD 
Sbjct: 476 LLNGYCKNGRVDDALALYREMFSKDVK-PNAITYNIILHGLFHAGRVVAAREFYMKIVDS 534

Query: 388 GSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           G      TY +V   L    E S +D+ LR
Sbjct: 535 GIQLGINTYNIVLGGLC---ENSFVDEALR 561



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 136/339 (40%), Gaps = 88/339 (25%)

Query: 150 GLWDFLKDMSRRGNGELV------------TTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           GL DF  +   RG+   V               S   +I  L +EG V++A   F+ M  
Sbjct: 108 GLLDFALEEESRGSRAAVHMMADDGYNCPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLG 167

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQM--------------ELPGFRCPPDVYT 243
               P++  YN VI+ LC+    +KA  +L+QM              ++ G    PDV T
Sbjct: 168 QGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGGLQPDVVT 227

Query: 244 YTILISSYCKYGMQTGCRK---------------------------------------AI 264
           Y++LI  YCK G  T  R                                         I
Sbjct: 228 YSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMI 287

Query: 265 RRRIWEANHLFRLML--------------------FKGFVPDVVAYNCLIDGCCKTYRIE 304
           +  I   +H+F +++                     KGF P+VV Y  +ID  CK  R+E
Sbjct: 288 QDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVE 347

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A+  F  M  +G  P+ +T+ S I     + E  K  ++  +M  +N G+ P +     
Sbjct: 348 DAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEM--INRGIHPNAIFLNT 405

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           I+ +LC+ GRVLEA DF  +++  G  P   +Y ++ D 
Sbjct: 406 IMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDG 444



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 127/297 (42%), Gaps = 54/297 (18%)

Query: 158 MSRRGNGELVTTS-SVTCLIKVLGEEGLVNEAL--------ATFYRMKQ--FRCRPDVYA 206
           M++ G  +L T + +   LI+     GL++ AL        A  + M    + C P+V +
Sbjct: 82  MAQVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRAAVHMMADDGYNCPPNVLS 141

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN+VIN L + G  +KA  L  +M   GF  PP++ TY  +I   CK          +++
Sbjct: 142 YNMVINGLFKEGEVDKAYTLFHEMLGQGF--PPNIVTYNSVIDGLCKAQAMDKAEAVLQQ 199

Query: 267 -----RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  L + M   G  PDVV Y+ LID  CK  R   A  +FD M ++G  P+
Sbjct: 200 MFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPD 259

Query: 322 RVTY-----------------------------------NSFIRYYSVVNEIDKAIEMMR 346
             TY                                   N  IR Y+    +DKA+    
Sbjct: 260 AYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFI 319

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +M+      P   +YT +I  LC+AGRV +A    +++V  G  P   T+  +   L
Sbjct: 320 EMRQKGFS-PNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGL 375



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 26/202 (12%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G V++ALA +  M     +P+   YN++++ L   G    AR    ++   G +    + 
Sbjct: 484 GRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLG--IN 541

Query: 243 TYTILISSYCKYG-------MQTGCRK-----AIRR------------RIWEANHLFRLM 278
           TY I++   C+         M  G R       +R             RI +A  LF  +
Sbjct: 542 TYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAI 601

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           L  G VPD + Y  +I    +   +E + ELF  M K GC  N  T N+ +R      ++
Sbjct: 602 LPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDV 661

Query: 339 DKAIEMMRKMQNLNHGVPTSSS 360
            +A   + K+    + V  S++
Sbjct: 662 RRAGTYLTKIDEKEYSVEASTA 683



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 99/257 (38%), Gaps = 29/257 (11%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           +  ++  L +EG V EA   F ++     +PDV +Y ++I+  C  G  +++  LL +M 
Sbjct: 403 LNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMV 462

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------------------------R 267
             G R  PD  TY+ L++ YCK G         R                         R
Sbjct: 463 SIGLR--PDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGR 520

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           +  A   +  ++  G    +  YN ++ G C+   ++ AL +F  +  K       T+N 
Sbjct: 521 VVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNI 580

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            I     V  I  A  +   +  L  G VP +  Y  +I +  E G + E+ +    +  
Sbjct: 581 MIVGLLKVGRIGDAKSLFSAI--LPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEK 638

Query: 387 GGSVPREYTYKLVCDAL 403
            G      T   +   L
Sbjct: 639 NGCTANSRTLNAIVRKL 655


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 128/293 (43%), Gaps = 17/293 (5%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           + +A EF+ W +R + + H      EM  + +           ++ M RRG      T  
Sbjct: 107 VRRAFEFFRWADRQWRYRHAPEVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRR--GTEQ 164

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              L+      G +  A+   + M++  C PD+   N+ +N L   G  +KA    E+M 
Sbjct: 165 FAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMR 224

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G    PDVYTY  LI   C             RR+ +A  +  +ML  G  PD ++Y 
Sbjct: 225 RVGVE--PDVYTYNCLIKGLCGA-----------RRVVDAMEMIGVMLQNGCPPDKISYY 271

Query: 292 CLIDGCCKTYRIERALELFDDM-NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
            ++   CK  R+E    L   M N  G  P++VTYN  I   +     D+A+E +R+ + 
Sbjct: 272 TVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEG 331

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
               V     Y+ I+H+ C  GR+ EA++ + E++  G  P   TY  V D  
Sbjct: 332 KRFRV-DEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGF 383



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 131/292 (44%), Gaps = 38/292 (13%)

Query: 137 EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196
           ++ + ++R   ++     L  M + G    ++  ++   + VL   G V++AL    RM+
Sbjct: 167 QLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMA--VNVLVVAGRVDKALEFAERMR 224

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR----CPPDVYTYTILISSYC 252
           +    PDVY YN +I  LC       AR +++ ME+ G      CPPD  +Y  ++S  C
Sbjct: 225 RVGVEPDVYTYNCLIKGLC------GARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLC 278

Query: 253 KYGMQTGCRKAIRR-------------------------RIWEANHLFRLMLFKGFVPDV 287
           K       R  ++R                            EA    R    K F  D 
Sbjct: 279 KEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDE 338

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y+ ++   C   R+  A E+  +M  KGC P+ VTY++ +  +  + E+D+A +MM+ 
Sbjct: 339 VGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKH 398

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           M   N   P + ++T +++ LC+ G+  EA + L +  +    P + TY +V
Sbjct: 399 MYK-NDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVV 449



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 28/298 (9%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V      V    +F + M R G    V T    CLIK L     V +A+     M Q  C
Sbjct: 206 VLVVAGRVDKALEFAERMRRVGVEPDVYT--YNCLIKGLCGARRVVDAMEMIGVMLQNGC 263

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD  +Y  V++ LC+     + R LL++M        PD  TY +LI    K+G     
Sbjct: 264 PPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAG-LFPDQVTYNVLIHGLAKHGHADEA 322

Query: 261 RKAIRR------------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
            + +R                         R+ EA  +   M+ KG  PDVV Y+ ++DG
Sbjct: 323 LEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDG 382

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            C+   +++A ++   M K  C PN VT+ + +     V +  +A E++ K +      P
Sbjct: 383 FCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEE-EWWTP 441

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
           +  +Y+ ++H     G++ E+ D + +++  G  P      L+  AL    +P+   D
Sbjct: 442 SDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKD 499



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 27/241 (11%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + EA      M    C+PDV  Y+ V++  CR+G  ++AR +++ M      C P+  
Sbjct: 352 GRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKND--CKPNTV 409

Query: 243 TYTILISSYCKYGMQTGCRKAIRR---RIWEAN--------HLFR-------------LM 278
           T+T L++  CK G  +   + + +     W  +        H FR              M
Sbjct: 410 THTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQM 469

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           L KGF P  V  N LI   CK  +   A +  +    KGC  N V + + I  +S   ++
Sbjct: 470 LQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDL 529

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           + A+ +M  M  L++  P   +YT ++ AL + GR+ EA   + ++++ G +P   TY+ 
Sbjct: 530 ESALSLMDDMY-LSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRT 588

Query: 399 V 399
           V
Sbjct: 589 V 589



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 22/241 (9%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNV 209
           W+ L     +   E  T S +T  + + G   EG + E+     +M Q    P     N+
Sbjct: 428 WELLN----KSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINL 483

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +I+ALC+     +A+  +EQ +  G  C  +V  +T +I  + + G            + 
Sbjct: 484 LIHALCKDRKPAEAKDFMEQCQSKG--CTINVVNFTTVIHGFSRQG-----------DLE 530

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            A  L   M      PDVV Y  ++D   K  R++ A  L + M  +G +P  VTY + I
Sbjct: 531 SALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVI 590

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             Y     ++  + ++ KM          S+Y  ++  LC  G++ EA   L +++   S
Sbjct: 591 HRYCEKGNLEDLLNLLEKMLARQE---MKSAYNQVVEKLCAFGKLNEAYSLLYKILRTAS 647

Query: 390 V 390
           V
Sbjct: 648 V 648


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 128/293 (43%), Gaps = 17/293 (5%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           + +A EF+ W +R + + H      EM  + +           ++ M RRG      T  
Sbjct: 107 VRRAFEFFRWADRQWRYRHAPEVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRR--GTEQ 164

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              L+      G +  A+   + M++  C PD+   N+ +N L   G  +KA    E+M 
Sbjct: 165 FAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMR 224

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G    PDVYTY  LI   C             RR+ +A  +  +ML  G  PD ++Y 
Sbjct: 225 RVGVE--PDVYTYNCLIKGLCGA-----------RRVVDAMEMIGVMLQNGCPPDKISYY 271

Query: 292 CLIDGCCKTYRIERALELFDDM-NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
            ++   CK  R+E    L   M N  G  P++VTYN  I   +     D+A+E +R+ + 
Sbjct: 272 TVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEG 331

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
               V     Y+ I+H+ C  GR+ EA++ + E++  G  P   TY  V D  
Sbjct: 332 KRFRV-DEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGF 383



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 131/292 (44%), Gaps = 38/292 (13%)

Query: 137 EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196
           ++ + ++R   ++     L  M + G    ++  ++   + VL   G V++AL    RM+
Sbjct: 167 QLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMA--VNVLVVAGRVDKALEFAERMR 224

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR----CPPDVYTYTILISSYC 252
           +    PDVY YN +I  LC       AR +++ ME+ G      CPPD  +Y  ++S  C
Sbjct: 225 RVGVEPDVYTYNCLIKGLC------GARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLC 278

Query: 253 KYGMQTGCRKAIRR-------------------------RIWEANHLFRLMLFKGFVPDV 287
           K       R  ++R                            EA    R    K F  D 
Sbjct: 279 KEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDE 338

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y+ ++   C   R+  A E+  +M  KGC P+ VTY++ +  +  + E+D+A +MM+ 
Sbjct: 339 VGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKH 398

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           M   N   P + ++T +++ LC+ G+  EA + L +  +    P + TY +V
Sbjct: 399 MYK-NDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVV 449



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 126/298 (42%), Gaps = 28/298 (9%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V      V    +F + M R G    V T    CLIK L     V +A+     M Q  C
Sbjct: 206 VLVVAGRVDKALEFAERMRRVGVEPDVYT--YNCLIKGLCGARRVVDAMEMIGVMLQNGC 263

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD  +Y  V++ LC+     + R LL++M        PD  TY +LI    K+G     
Sbjct: 264 PPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAG-LFPDQVTYNVLIHGLAKHGHADEA 322

Query: 261 RKAIRR------------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
            + +R                         R+ EA  +   M+ KG  PDVV Y+ ++DG
Sbjct: 323 LEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDG 382

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            C+   +++A ++   M K  C PN VT+ + +     V +  +A E++ K +      P
Sbjct: 383 FCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEE-EWWTP 441

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
           +  +Y+ ++H     G++ E+ D + +++  G  P      L+  AL    +P+   D
Sbjct: 442 SDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKD 499



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 27/241 (11%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + EA      M    C+PDV  Y+ V++  CR+G  ++AR +++ M      C P+  
Sbjct: 352 GRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKND--CKPNTV 409

Query: 243 TYTILISSYCKYGMQTGCRKAIRR---RIWEAN--------HLFR-------------LM 278
           T+T L++  CK G  +   + + +     W  +        H FR              M
Sbjct: 410 THTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQM 469

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           L KGF P  V  N LI   CK  +   A +  +    KGC  N V + + I  +S   ++
Sbjct: 470 LQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDL 529

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           + A+ +M  M  L++  P   +YT ++ AL + GR+ EA   + ++++ G +P   TY+ 
Sbjct: 530 ESALSLMDDMY-LSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRT 588

Query: 399 V 399
           V
Sbjct: 589 V 589



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 22/241 (9%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNV 209
           W+ L     +   E  T S +T  + + G   EG + E+     +M Q    P     N+
Sbjct: 428 WELLN----KSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINL 483

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +I+ALC+     +A+  +EQ +  G  C  +V  +T +I  + + G            + 
Sbjct: 484 LIHALCKDRKPAEAKDFMEQCQSKG--CTINVVNFTTVIHGFSRQG-----------DLE 530

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            A  L   M      PDVV Y  ++D   K  R++ A  L + M  +G +P  VTY + I
Sbjct: 531 SALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVI 590

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             Y     ++  + ++ KM          S+Y  ++  LC  G++ EA   L +++   S
Sbjct: 591 HRYCEKGNLEDLLNLLEKMLARQE---MKSAYNQVVEKLCAFGKLNEAYSLLYKILRTAS 647

Query: 390 V 390
           V
Sbjct: 648 V 648


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 134/269 (49%), Gaps = 20/269 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNG-ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
             +   V    D L  M + G G ++VT +S   LI  L   G  ++A      M +   
Sbjct: 196 LCKSKQVDNALDLLNRMEKDGIGPDVVTYNS---LISGLCSSGRWSDATRMVSCMTKREI 252

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PDV+ +N +I+A  + G  ++A    E+M        PD+ TY++LI   C Y      
Sbjct: 253 YPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL--DPDIVTYSLLIYGLCMYS----- 305

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+ EA  +F  M+ KG  PDVV Y+ LI+G CK+ ++E  ++LF +M+++G + 
Sbjct: 306 ------RLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVR 359

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
           N VTY   I+ Y    +++ A E+ R+M  +  GV P   +Y  ++H LC+ G++ +A  
Sbjct: 360 NTVTYTILIQGYCRAGKLNVAEEIFRRM--VFCGVHPNIITYNVLLHGLCDNGKIEKALV 417

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEE 408
            LA++   G      TY ++   +  A E
Sbjct: 418 ILADMQKNGMDADIVTYNIIIRGMCKAGE 446



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 136/321 (42%), Gaps = 32/321 (9%)

Query: 119 YHWVE-RFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
           Y W + +     HN  TC  +   F R + +     FL  M + G+   + T     L+ 
Sbjct: 102 YLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVT--FGSLLN 159

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
                  V +AL  F +M     +P+V  YN +I+ LC+    + A  LL +ME  G   
Sbjct: 160 GFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGI-- 217

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAI------------------------RRRIWEANH 273
            PDV TY  LIS  C  G  +   + +                          R+ EA  
Sbjct: 218 GPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEE 277

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
            +  M+ +   PD+V Y+ LI G C   R++ A E+F  M  KGC P+ VTY+  I  Y 
Sbjct: 278 FYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYC 337

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
              +++  +++  +M      V  + +YT +I   C AG++  A +    +V  G  P  
Sbjct: 338 KSKKVEHGMKLFCEMSQ-RGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNI 396

Query: 394 YTYKLVCDAL--NAAEEPSLL 412
            TY ++   L  N   E +L+
Sbjct: 397 ITYNVLLHGLCDNGKIEKALV 417



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 108/218 (49%), Gaps = 14/218 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++++L  F+ M Q R  P +  ++ +++A+ ++  ++   +L EQM++ G   P ++ T 
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGI--PHNLCTC 119

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            IL++ +C+             ++  A      M+  G  P +V +  L++G C+  R+ 
Sbjct: 120 NILLNCFCRCS-----------QLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVY 168

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            AL +FD M   G  PN V YN+ I       ++D A++++ +M+    G P   +Y  +
Sbjct: 169 DALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIG-PDVVTYNSL 227

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           I  LC +GR  +A   ++ +      P  +T+  + DA
Sbjct: 228 ISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDA 265


>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 451

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 143/292 (48%), Gaps = 28/292 (9%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           + I+ +  N ++  +D  KD  +  +G    T S   L++     G ++ A   F +M +
Sbjct: 153 LDILVSHRNYLRPAFDLFKDAHK--HGVFPDTKSYNILMRAFCLNGDISIAYTLFNKMFK 210

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
               PD+ +Y +++ ALCR    N A  L E M   GF   PD +TYT L++S C+    
Sbjct: 211 RDVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGF--VPDSFTYTTLLNSLCR---- 264

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                  ++++ EA  L   M  KG  PD+V YN +I G C+  R   A ++ DDM   G
Sbjct: 265 -------KKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANG 317

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL----CEAGR 373
           C+PN V+Y + +     +  +D+A + + +M  L+ G    S +  +IHAL    C  GR
Sbjct: 318 CLPNLVSYRTLVNGLCHLGMLDEATKYVEEM--LSKGF---SPHFAVIHALVKGFCNVGR 372

Query: 374 VLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRIR 421
           + EA   L + ++    P + T+ +    +C+  +  +   +L++ L+  I+
Sbjct: 373 IEEACGVLTKSLEHREAPHKDTWMIIVPQICEVDDGVKIDGVLEEVLKIEIK 424



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 135/306 (44%), Gaps = 35/306 (11%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A E + +     +F HN  T   + + F R  +   L D L    +  + + +T +  + 
Sbjct: 58  AKEIFDYASLQPNFRHNYSTYLILILKFGRSKHF-SLLDDLLRRLKSESSQPITPTLFSY 116

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF-LLEQMELP 233
           LIK+ GE  L ++AL TFY M QF  +P     N +++ L    N+ +  F L +     
Sbjct: 117 LIKIYGEANLPDKALNTFYIMLQFNIKPLTKHLNRILDILVSHRNYLRPAFDLFKDAHKH 176

Query: 234 GFRCPPDVYTYTILISSYCKYG---------------------------MQTGCRKAIRR 266
           G    PD  +Y IL+ ++C  G                           MQ  CRK+   
Sbjct: 177 GVF--PDTKSYNILMRAFCLNGDISIAYTLFNKMFKRDVVPDIQSYRILMQALCRKS--- 231

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++  A  LF  ML KGFVPD   Y  L++  C+  ++  A +L   M  KGC P+ V YN
Sbjct: 232 QVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYN 291

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           + I  +        A +++  MQ  N  +P   SY  +++ LC  G + EA  ++ E++ 
Sbjct: 292 TVILGFCREGRAHDACKVIDDMQA-NGCLPNLVSYRTLVNGLCHLGMLDEATKYVEEMLS 350

Query: 387 GGSVPR 392
            G  P 
Sbjct: 351 KGFSPH 356


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 115/260 (44%), Gaps = 16/260 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R    K   + L++M  +G    V T   T +I    +EG +++AL     MK   C+P+
Sbjct: 301 RERKAKEAEEMLQEMFEKGLAPCVVT--CTAVINAYCKEGRMSDALRVLELMKLRGCKPN 358

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V+ YN ++   C  G  +KA  LL +M   G    PD  TY +LI   C  G        
Sbjct: 359 VWTYNALVQGFCNEGKVHKAMTLLNKMRACGVN--PDAVTYNLLIRGQCIDG-------- 408

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               I  A  L RLM   G + D   YN LI+  CK  R ++A  LFD +  +G  PN V
Sbjct: 409 ---HIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAV 465

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           T+NS I       + D A + + KM +     P + +Y+  I  LC+     E   F+ E
Sbjct: 466 TFNSLINGLCKSGKADIAWKFLEKMVSAG-CTPDTYTYSSFIEHLCKMKGSQEGLSFIGE 524

Query: 384 LVDGGSVPREYTYKLVCDAL 403
           ++     P    Y +V   L
Sbjct: 525 MLQKDVKPSTVNYTIVIHKL 544



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 19/244 (7%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           GEEGL+        RMK+   RP   AY  V++  CR     +A  +L++M   G    P
Sbjct: 270 GEEGLL-----MLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGL--AP 322

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
            V T T +I++YCK G           R+ +A  +  LM  +G  P+V  YN L+ G C 
Sbjct: 323 CVVTCTAVINAYCKEG-----------RMSDALRVLELMKLRGCKPNVWTYNALVQGFCN 371

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             ++ +A+ L + M   G  P+ VTYN  IR   +   I+ A  ++R M+  +  +    
Sbjct: 372 EGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEG-DGLIADQY 430

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
           +Y  +I+ALC+ GR  +A      L   G  P   T+  + + L  + +  +    L K 
Sbjct: 431 TYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKM 490

Query: 420 IRDG 423
           +  G
Sbjct: 491 VSAG 494



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 22/244 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+  L    L   AL  F  M +     P    YN VI +LCR  +  +A   L  M   
Sbjct: 123 LLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLMVRS 182

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G+R  PD YT+  LI  YC+             ++  A  LF  M  +GF  DVV+Y  L
Sbjct: 183 GWR--PDAYTFNSLIVGYCR-----------TNQVDVARDLFDKMPLRGFAQDVVSYATL 229

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G C+  RI+ A+ELF +M++    P+   Y + ++        ++ + M+R+M+ L  
Sbjct: 230 IEGLCEAGRIDEAVELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGW 285

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
             P++ +Y  ++   C   +  EA + L E+ + G  P   T   V   +NA  +   + 
Sbjct: 286 R-PSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAV---INAYCKEGRMS 341

Query: 414 DGLR 417
           D LR
Sbjct: 342 DALR 345



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 115/292 (39%), Gaps = 60/292 (20%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  +   +I+ L     +  AL     M +   RPD Y +N +I   CR    + AR L 
Sbjct: 152 TAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLF 211

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG-------------------------------- 255
           ++M L GF    DV +Y  LI   C+ G                                
Sbjct: 212 DKMPLRGF--AQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAER 269

Query: 256 -----------MQTGCRKAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNC 292
                       + G R + R            R+  EA  + + M  KG  P VV    
Sbjct: 270 GEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTA 329

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +I+  CK  R+  AL + + M  +GC PN  TYN+ ++ +    ++ KA+ ++ KM+   
Sbjct: 330 VINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRAC- 388

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            GV P + +Y  +I   C  G +  A   L  +   G +  +YTY  + +AL
Sbjct: 389 -GVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINAL 439



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 27/224 (12%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+G +    +   LI  L ++G  ++A + F  ++    +P+   +N +IN LC+ G  +
Sbjct: 422 GDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKAD 481

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKY-GMQTGCR------------------K 262
            A   LE+M   G  C PD YTY+  I   CK  G Q G                     
Sbjct: 482 IAWKFLEKMVSAG--CTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTI 539

Query: 263 AIRRRIWEANH-----LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
            I + + E N+      +  M+  G  PDVV Y   +   C   R+  A  +  +M+K G
Sbjct: 540 VIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNG 599

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
              + + YN+ +  ++ + + D A+ ++++M ++   VP   +Y
Sbjct: 600 VTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVA-SVPNQFTY 642



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 119/314 (37%), Gaps = 85/314 (27%)

Query: 152 WDFLKDMSRRG-NGELVTTSS-VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
           W FL+ M   G   +  T SS +  L K+ G +    E L+    M Q   +P    Y +
Sbjct: 484 WKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQ----EGLSFIGEMLQKDVKPSTVNYTI 539

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           VI+ L +  N+        +M   G  C PDV TYT  + +YC           I  R+ 
Sbjct: 540 VIHKLLKERNYGLVARTWGEMVSSG--CNPDVVTYTTSMRAYC-----------IEGRLN 586

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE--------------------- 308
           EA ++   M   G   D +AYN L+DG     + + A+                      
Sbjct: 587 EAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILL 646

Query: 309 -------------------------------LFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
                                          LFD M K   +PN  TY+S +  +S    
Sbjct: 647 RHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGR 706

Query: 338 IDKAIEMMRKMQ----NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
            ++A  ++  M+    +LN  +     YT ++   C++ R L+A   +  ++  G +P+ 
Sbjct: 707 TEEATSLVSLMKEDSISLNEDI-----YTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQL 761

Query: 394 YTYK-----LVCDA 402
            +Y+     L+C+ 
Sbjct: 762 MSYQHLLSGLICEG 775



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 18/180 (10%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
            +V GL+D +K      N  L  + + + +++   E+G   EA +    MK+     +  
Sbjct: 673 TDVFGLFDVMKK-----NEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNED 727

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            Y  ++   C+   +  A  L+  M   GF   P + +Y  L+S     G QT       
Sbjct: 728 IYTALVTCFCKSKRYLDAWVLVCSMIQHGFI--PQLMSYQHLLSGLICEG-QTD------ 778

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
               +A  +F    +K + PD + +  +IDG  K    + + E+   + +  C P+  TY
Sbjct: 779 ----KAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTY 834



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 13/168 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + +    F  MK+    P+   Y+ ++      G   +A  L+  M+        D+YT 
Sbjct: 672 LTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYT- 730

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L++ +CK            +R  +A  L   M+  GF+P +++Y  L+ G     + +
Sbjct: 731 -ALVTCFCK-----------SKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTD 778

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +A E+F +   K   P+ + +   I         D + EM+  ++ +N
Sbjct: 779 KAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMN 826


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 32/256 (12%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+K L ++GL+ +AL     M +  C PD++ YN+VIN LC++G  + A  L+      G
Sbjct: 396 LVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKG 455

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH--------------------- 273
               PDV+T+  LI  YCK  ++      I  R+W  NH                     
Sbjct: 456 HL--PDVFTFNTLIDGYCK-KLKLDNAIEIVDRMW--NHGVSPDVITYNSILNGLCKAGK 510

Query: 274 ------LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
                  F+LM+ KG VP+++ YN L +  CK  ++E AL L ++M  KG  P+ V + +
Sbjct: 511 YEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGT 570

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            ++ +    ++D A ++ +++        T ++Y  +I+A      +  A     ++ + 
Sbjct: 571 LMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCEN 630

Query: 388 GSVPREYTYKLVCDAL 403
           G  P  YTY+++ D  
Sbjct: 631 GFSPDSYTYRVMIDGF 646



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 143/314 (45%), Gaps = 31/314 (9%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           KA E ++ V++   F H  +T K M          + + + L +     +  L+    + 
Sbjct: 22  KALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEGVYIG 81

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            + +  G +G + EA+  F RM  F C P V +YN ++N L     F++A  +  +M   
Sbjct: 82  AM-RNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDK 140

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR------------------IWEANH-- 273
           G    PDVYT+TI + S+C+       R+ +                      +E NH  
Sbjct: 141 GI--VPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRV 198

Query: 274 ----LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
               LF  ML  G  PD++A+N LI   C+   ++ +  L + + K+G  PN  T N FI
Sbjct: 199 EAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFI 258

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           + +     +++AI   R +  +  G+ P   +Y  +I  LC+  +V+EA  +L ++V+ G
Sbjct: 259 QGFCQRAMLNEAI---RLLDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEG 315

Query: 389 SVPREYTYKLVCDA 402
             P  +TY  + D 
Sbjct: 316 YEPDGFTYNSIIDG 329



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 15/232 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +V   I+   +  ++NEA+     + +    PDV  YN +I  LC+     +A   L +M
Sbjct: 253 TVNIFIQGFCQRAMLNEAIRLLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAEHYLRKM 311

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G+   PD +TY  +I  YCK GM           +  A+ + R   FKGFVPD   Y
Sbjct: 312 VNEGYE--PDGFTYNSIIDGYCKLGM-----------MQNADQILRDGAFKGFVPDESTY 358

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI+G C+   I+RA+ +F++  +KG  PN V  N+ ++  S    I +A+++M +M  
Sbjct: 359 CSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSE 418

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            N   P   +Y  +I+ LC+ G V +A + + + +  G +P  +T+  + D 
Sbjct: 419 -NGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDG 469



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 139/292 (47%), Gaps = 35/292 (11%)

Query: 155 LKDMSRRGNGELVTTSSVTC-LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           L+D + +G    V   S  C LI  L ++G ++ A+  F    +   +P++   N ++  
Sbjct: 343 LRDGAFKG---FVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKG 399

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           L + G   +A  L+ +M   G  C PD++TY ++I+  CK     GC       + +A++
Sbjct: 400 LSQQGLILQALKLMNEMSENG--CSPDIWTYNLVINGLCK----IGC-------VSDADN 446

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L    + KG +PDV  +N LIDG CK  +++ A+E+ D M   G  P+ +TYNS +    
Sbjct: 447 LVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLC 506

Query: 334 VVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
              + +  +   + M  +  G VP   +Y  +  + C+A +V EA + + E+ + G  P 
Sbjct: 507 KAGKYEDVMGTFKLM--MEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPD 564

Query: 393 EYTY----KLVCD--ALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIM 438
              +    K  CD   L+ A +       L KR+ +  +Y+F   +    IM
Sbjct: 565 VVNFGTLMKGFCDNGDLDGAYQ-------LFKRVDE--QYKFSHTIATYNIM 607



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 117/259 (45%), Gaps = 33/259 (12%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EA     +M      PD + YN +I+  C++G    A  +L      GF   PD  TY
Sbjct: 301 VVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGF--VPDESTY 358

Query: 245 TILISSYCKYG------------MQTGCR----------KAIRRR--IWEANHLFRLMLF 280
             LI+  C+ G            M+ G +          K + ++  I +A  L   M  
Sbjct: 359 CSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSE 418

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  PD+  YN +I+G CK   +  A  L  D   KG +P+  T+N+ I  Y    ++D 
Sbjct: 419 NGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDN 478

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           AIE++ +M   NHGV P   +Y  I++ LC+AG+  +       +++ G VP   TY ++
Sbjct: 479 AIEIVDRM--WNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNIL 536

Query: 400 ----CDALNAAEEPSLLDD 414
               C A    E  +L+++
Sbjct: 537 TESFCKARKVEEALNLIEE 555



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 30/209 (14%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +++T +S+   +  L + G   + + TF  M +  C P++  YN++  + C+     +A 
Sbjct: 494 DVITYNSI---LNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEAL 550

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------------------ 266
            L+E+M+  G    PDV  +  L+  +C  G   G  +  +R                  
Sbjct: 551 NLIEEMQNKGL--TPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMI 608

Query: 267 -------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   +  A  LF  M   GF PD   Y  +IDG CKT  I           +KG I
Sbjct: 609 NAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLI 668

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           P+  T+   +    +   + +A+ ++  M
Sbjct: 669 PSLTTFGRVLNCLCLKRRVHEAVGIIHLM 697



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 15/122 (12%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFL 226
           T ++   +I     +  +N A   F +M +    PD Y Y V+I+  C+ GN N    FL
Sbjct: 600 TIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFL 659

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
           L ++E               LI S   +G    C   ++RR+ EA  +  LM+ KG VP+
Sbjct: 660 LVKIEKG-------------LIPSLTTFGRVLNCL-CLKRRVHEAVGIIHLMVHKGIVPE 705

Query: 287 VV 288
           VV
Sbjct: 706 VV 707


>gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22670, mitochondrial; Flags: Precursor
 gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 562

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 131/280 (46%), Gaps = 18/280 (6%)

Query: 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           G N+A  F+ W      + H+  T   M  V  +  N   +W+ + +M++    +LVT  
Sbjct: 145 GWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLD 204

Query: 171 SVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           +++ +++ L + G  N+A+  F  M K +  + D  A N +++AL +  +   A     +
Sbjct: 205 TMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAH----E 260

Query: 230 MELPGFRC-PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           + L  F    PD  T+ ILI  +CK            R+  +A  +  LM    F PDVV
Sbjct: 261 VFLKLFDTIKPDARTFNILIHGFCK-----------ARKFDDARAMMDLMKVTEFTPDVV 309

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y   ++  CK     R  E+ ++M + GC PN VTY   +       ++ +A+ +  KM
Sbjct: 310 TYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKM 369

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +  +  VP +  Y+ +IH L + GR  +A +   ++ + G
Sbjct: 370 KE-DGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQG 408



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 122/304 (40%), Gaps = 53/304 (17%)

Query: 93  NVLVLGPAAYR--DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKG 150
           N+L+ G    R  D  +  + L K TEF   V  +  F   E  CKE    F R N    
Sbjct: 277 NILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFV--EAYCKEGD--FRRVN---- 328

Query: 151 LWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
             + L++M   G N  +VT    T ++  LG+   V EAL  + +MK+  C PD   Y+ 
Sbjct: 329 --EMLEEMRENGCNPNVVT---YTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSS 383

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +I+ L + G F  A  + E M   G R   DV  Y  +IS+   +       + ++R   
Sbjct: 384 LIHILSKTGRFKDAAEIFEDMTNQGVR--RDVLVYNTMISAALHHSRDEMALRLLKRMED 441

Query: 270 EANH---------------------------LFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           E                              L   M+      DV  Y  LI G C + +
Sbjct: 442 EEGESCSPNVETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGK 501

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA--IEMMRKMQNLNHGVPTSSS 360
           +E A   F++  +KG +P   T         +V+E++K    E   K+Q+L        S
Sbjct: 502 VEEACLFFEEAVRKGMVPRDSTCK------MLVDELEKKNMAEAKLKIQSLVQSKTMIDS 555

Query: 361 YTPI 364
           ++P+
Sbjct: 556 HSPL 559



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERA----LELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           G   D +A N L+D   K   IE A    L+LFD +      P+  T+N  I  +    +
Sbjct: 234 GVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIK-----PDARTFNILIHGFCKARK 288

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            D A  MM  M+ +    P   +YT  + A C+ G      + L E+ + G  P   TY 
Sbjct: 289 FDDARAMMDLMK-VTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYT 347

Query: 398 LVCDALNAAEE 408
           +V  +L  +++
Sbjct: 348 IVMHSLGKSKQ 358


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 135/267 (50%), Gaps = 22/267 (8%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLV--NEALATFYR 194
           MG V+AR      + + L  M  RG   +LV   S   LI    + G +  N AL     
Sbjct: 256 MG-VYARNGRFSKVKELLDLMRERGCVPDLV---SFNTLINARMKSGAMEPNLALQLLNE 311

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           +++   RPD+  YN +I+A  R  N  +A  +   ME    RC PD++TY  +IS Y + 
Sbjct: 312 VRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDME--SHRCQPDLWTYNAMISVYGR- 368

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                C +A +     A  LF+ +  KGF PD V YN L+    +    E+  ++ ++M 
Sbjct: 369 -----CARARK-----AEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMV 418

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           K+G   + +TYN+ I  Y      D+A+++ R M++     P + +YT +I +L +A +V
Sbjct: 419 KRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRN-PDAVTYTVLIDSLGKASKV 477

Query: 375 LEARDFLAELVDGGSVPREYTYK-LVC 400
            EA + ++E++D G  P  +TY  L+C
Sbjct: 478 EEAANVMSEMLDAGVKPTLHTYSALIC 504



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 13/228 (5%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           V  ++ VLG+      A+  F R +       V  YN ++    R G F+K + LL+ M 
Sbjct: 218 VATILGVLGKANQEALAVEIFARAES-SVGDTVQVYNAMMGVYARNGRFSKVKELLDLMR 276

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G  C PD+ ++  LI++  K G       A+   +  A  L   +   G  PD++ YN
Sbjct: 277 ERG--CVPDLVSFNTLINARMKSG-------AMEPNL--ALQLLNEVRRSGIRPDIITYN 325

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            LI  C +   +E A+ +F DM    C P+  TYN+ I  Y       KA E+ +++++ 
Sbjct: 326 TLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESK 385

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
               P + +Y  +++A    G   + RD   E+V  G    E TY  +
Sbjct: 386 GF-FPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTI 432



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 122/250 (48%), Gaps = 23/250 (9%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           KA E +  +E    FF + +T   +   F+R  N + + D  ++M +RG G+   T +  
Sbjct: 374 KAEELFKELESK-GFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNT- 431

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I + G++G  ++A+  +  MK     PD   Y V+I++L +     +A  ++ +M   
Sbjct: 432 -IIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDA 490

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G +  P ++TY+ LI +Y K G +            EA   F  M   G  PD +AY+ +
Sbjct: 491 GVK--PTLHTYSALICAYAKAGKRE-----------EAEETFNCMRRSGIKPDRLAYSVM 537

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE-----IDKAIEMMRKM 348
           +D   +   +++A+ L+ +M ++G  P+   Y   +  +++V E     +D+ I  M ++
Sbjct: 538 LDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYE--VMMHALVRENMWDVVDRIIRDMEEL 595

Query: 349 QNLNHGVPTS 358
             +N  V +S
Sbjct: 596 SGMNPQVISS 605



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 107/233 (45%), Gaps = 24/233 (10%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNF--NKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
           M++  C PD+ ++N +INA  + G    N A  LL ++   G R  PD+ TY  LIS+  
Sbjct: 275 MRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIR--PDIITYNTLISA-- 330

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
                  C +     + EA  +F  M      PD+  YN +I    +  R  +A ELF +
Sbjct: 331 -------CSR--ESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKE 381

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           +  KG  P+ VTYNS +  +S     +K  ++  +M     G     +Y  IIH   + G
Sbjct: 382 LESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFG-QDEMTYNTIIHMYGKQG 440

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALNAA---EEPS-----LLDDGLR 417
           R  +A     ++   G  P   TY ++ D+L  A   EE +     +LD G++
Sbjct: 441 RHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVK 493



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 64/254 (25%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI     E  + EA+A F  M+  RC+PD++ YN +I+   R     KA  L +++E  G
Sbjct: 327 LISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKG 386

Query: 235 FRCPPDVYTYTILISSYCKYG----MQTGCRKAIRR--------------------RIWE 270
           F   PD  TY  L+ ++ + G    ++  C + ++R                    R  +
Sbjct: 387 FF--PDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQ 444

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL----------------------- 307
           A  ++R M   G  PD V Y  LID   K  ++E A                        
Sbjct: 445 AMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALIC 504

Query: 308 ------------ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG- 354
                       E F+ M + G  P+R+ Y+  + ++   NE+ KA+ +  +M  +  G 
Sbjct: 505 AYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEM--IREGF 562

Query: 355 VPTSSSYTPIIHAL 368
            P +  Y  ++HAL
Sbjct: 563 TPDNGLYEVMMHAL 576



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 78/182 (42%), Gaps = 13/182 (7%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            LI    ++ +  +A   F  ++    + D   Y++++      G+  KA  LL  M+  G
Sbjct: 1025 LITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESG 1084

Query: 235  FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                P + T  +L+ SY K G              EA ++ + +   G V D + Y+ +I
Sbjct: 1085 IE--PTISTMHLLMVSYGKSGQPE-----------EAENVLKNLRTTGVVLDTLPYSSVI 1131

Query: 295  DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            D   K    +  +E   +M + G  P+   +  FIR  ++    ++AI ++  +Q+    
Sbjct: 1132 DAYLKKGDFKAGIEKLTEMKEAGIEPDHRIWTCFIRAATLSEGTNEAIVLLNALQDAGFD 1191

Query: 355  VP 356
            +P
Sbjct: 1192 LP 1193



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 119/286 (41%), Gaps = 21/286 (7%)

Query: 140  IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
            IV  R N +  +   L+DM     G  ++ SS+   ++   + G + E    +  MK   
Sbjct: 855  IVDRRLNELYVVIQELQDM-----GLKISKSSILLTLEAFAQAGNLFEVQKIYNGMKAAG 909

Query: 200  CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT- 258
              P ++ Y +++  LC+         +L +ME  GF+  PD+     ++  Y   G++  
Sbjct: 910  YFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQ--PDLQICNSILKLYL--GIEDF 965

Query: 259  GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                 I ++I +A+            PD   YN LI   C+  R E    L + M   G 
Sbjct: 966  KSMGIIYQKIQDAS----------LKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGL 1015

Query: 319  IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
             P   TY S I  ++     ++A E+  ++++  + +   + Y  ++     +G   +A 
Sbjct: 1016 EPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKL-DRAFYHLMMKTYRTSGDHRKAE 1074

Query: 379  DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
            + LA + + G  P   T  L+  +   + +P   ++ L+     G+
Sbjct: 1075 NLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGV 1120



 Score = 42.0 bits (97), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 44/226 (19%), Positives = 88/226 (38%), Gaps = 14/226 (6%)

Query: 163  NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
            +G   T  SV  L++ L  +  +NE       ++    +    +  + + A  + GN  +
Sbjct: 838  DGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFE 897

Query: 223  ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
             + +   M+  G+   P ++ Y I++   CK      C     +R+ +   +   M   G
Sbjct: 898  VQKIYNGMKAAGYF--PTMHVYRIMLRLLCK------C-----KRVRDVETMLCEMEEAG 944

Query: 283  FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
            F PD+   N ++         +    ++  +      P+  TYN+ I  Y      ++  
Sbjct: 945  FQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGF 1004

Query: 343  EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             +M KM++L    P   +Y  +I A  +     +A +   EL   G
Sbjct: 1005 SLMNKMRSLGLE-PKLDTYRSLITAFNKQRMYEQAEELFEELRSNG 1049


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 16/242 (6%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G +    + T LI    + G V+ AL  F  M     RPD+  YN +IN LC+VG+  
Sbjct: 346 GRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLK 405

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLF 280
           +AR L+ +M   G +  PD  T+T LI   CK G M++     I+RR+ E          
Sbjct: 406 EARRLVNEMTASGLK--PDKITFTTLIDGCCKDGDMESALE--IKRRMVE---------- 451

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G   D VA+  LI G C+  R+  A  +  DM   G  P+  TY   I  +    ++  
Sbjct: 452 EGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKM 511

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
             +++++MQ+  H VP   +Y  +++ LC+ G++  A+  L  +++ G  P + TY ++ 
Sbjct: 512 GFKLLKEMQSDGH-VPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILL 570

Query: 401 DA 402
           D 
Sbjct: 571 DG 572



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 16/235 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  S   LI    + G V E       M+     PDV+ ++ +IN LC+ G  ++   L 
Sbjct: 282 TVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLF 341

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M   G    P+  T+T LI   CK G           ++  A   F++ML +G  PD+
Sbjct: 342 DEMCGRGLV--PNGVTFTTLIDGQCKGG-----------KVDLALKNFQMMLAQGVRPDL 388

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V YN LI+G CK   ++ A  L ++M   G  P+++T+ + I       +++ A+E+ R+
Sbjct: 389 VTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRR 448

Query: 348 MQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           M  +  G+     ++T +I  LC  GRV +A   L +++  G  P + TY +V D
Sbjct: 449 M--VEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVID 501



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 16/225 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P +Y +NV+++  C+ G+   AR + +++   G R  P V ++  LIS  CK G      
Sbjct: 246 PKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLR--PTVVSFNTLISGCCKSG------ 297

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + E   L  +M  +G  PDV  ++ LI+G CK  R++    LFD+M  +G +PN
Sbjct: 298 -----DVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPN 352

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            VT+ + I       ++D A++  + M  L  GV P   +Y  +I+ LC+ G + EAR  
Sbjct: 353 GVTFTTLIDGQCKGGKVDLALKNFQMM--LAQGVRPDLVTYNALINGLCKVGDLKEARRL 410

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           + E+   G  P + T+  + D      +     +  R+ + +GIE
Sbjct: 411 VNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIE 455



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 259 GCRKAIRR-------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           GC   +RR        I  +  L+  +L  G+ P +  +N L+ G CK   +  A  +FD
Sbjct: 213 GCENLLRRVVRLRPVEIERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFD 272

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCE 370
           ++ K+G  P  V++N+ I       ++++   +   M+  + GV P   +++ +I+ LC+
Sbjct: 273 EIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVME--SEGVCPDVFTFSALINGLCK 330

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            GR+ E      E+   G VP   T+  + D 
Sbjct: 331 EGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDG 362



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 16/163 (9%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI  L  EG V++A      M     +PD   Y +VI+  C+ G+      LL++M
Sbjct: 460 AFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEM 519

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  G    P V TY  L++  CK G           ++  A  L   ML  G  P+ + Y
Sbjct: 520 QSDGHV--PGVVTYNALMNGLCKQG-----------QMKNAKMLLDAMLNVGVAPNDITY 566

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           N L+DG  K +     +++F+  ++KG + +  +Y + +   S
Sbjct: 567 NILLDGHSK-HGSSVDVDIFN--SEKGLVTDYASYTALVNESS 606


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 112/225 (49%), Gaps = 16/225 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I      GL+++AL     M    C PDV  YN ++N LC+      A  LL +M  
Sbjct: 20  TMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRE 79

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G   PPD+ T+T LI  YC           I  ++ +A  LF  ML +   PD+V YN 
Sbjct: 80  RGV--PPDLCTFTTLIHGYC-----------IEGKLDKALQLFDTMLNQRLRPDIVTYNT 126

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LIDG C+   +++A +L+DDM+ +   PN VTY+  I  +    +++ A   + +M  +N
Sbjct: 127 LIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEM--IN 184

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            G+ P   +Y  II   C +G V + + FL +++     P   TY
Sbjct: 185 KGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITY 229



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 132/288 (45%), Gaps = 28/288 (9%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  ++ A G         L +M  RG    + T   T LI     EG +++AL  F  
Sbjct: 62  CKERRLLDAEG--------LLNEMRERGVPPDLCT--FTTLIHGYCIEGKLDKALQLFDT 111

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M   R RPD+  YN +I+ +CR G+ +KA  L + M        P+  TY+ILI S+C+ 
Sbjct: 112 MLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH--SREIFPNHVTYSILIDSHCEK 169

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           ++ +A      M+ KG +P+++ YN +I G C++  + +  +    M 
Sbjct: 170 G-----------QVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMM 218

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
                P+ +TYN+ I  Y   +++  A +++  M+      P   +Y  +I+     G V
Sbjct: 219 VNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEK-EKVQPDVVTYNMLINGFSVHGNV 277

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCD----ALNAAEEPSLLDDGLRK 418
            EA     ++   G  P  YTY  + +    A N+ E   L D+ L++
Sbjct: 278 QEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQR 325



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 25/193 (12%)

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQT------------GCRKAI------------RR 266
           E+  F   PD   YT++I  +C+ G+ +            GC   +             R
Sbjct: 6   EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 65

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           R+ +A  L   M  +G  PD+  +  LI G C   ++++AL+LFD M  +   P+ VTYN
Sbjct: 66  RLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYN 125

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           + I       ++DKA ++   M +     P   +Y+ +I + CE G+V +A  FL E+++
Sbjct: 126 TLIDGMCRQGDLDKANDLWDDMHS-REIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMIN 184

Query: 387 GGSVPREYTYKLV 399
            G +P   TY  +
Sbjct: 185 KGILPNIMTYNSI 197



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 77/195 (39%), Gaps = 31/195 (15%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           LWD   DM  R       T S+  LI    E+G V +A      M      P++  YN +
Sbjct: 143 LWD---DMHSREIFPNHVTYSI--LIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSI 197

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK-------- 262
           I   CR GN +K +  L++M +   +  PD+ TY  LI  Y K        K        
Sbjct: 198 IKGYCRSGNVSKGQKFLQKMMVN--KVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKE 255

Query: 263 ----------------AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
                           ++   + EA  +F  M  KG  PD   Y  +I+G       + A
Sbjct: 256 KVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEA 315

Query: 307 LELFDDMNKKGCIPN 321
            +L D+M ++G  P+
Sbjct: 316 FQLHDEMLQRGFAPD 330



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G VPD V Y  +I G C+   +  AL + D+M   GC+P+ VTYN+ +        +  A
Sbjct: 11  GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 70

Query: 342 IEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
             ++ +M+    GVP    ++T +IH  C  G++ +A      +++    P   TY  + 
Sbjct: 71  EGLLNEMR--ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLI 128

Query: 401 DAL 403
           D +
Sbjct: 129 DGM 131


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 120/239 (50%), Gaps = 14/239 (5%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +IK L + G    AL    +M++  C+PDV AYN VI++LC+    N+A +   +M  
Sbjct: 180 TTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVD 239

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G   PP+V TY+ ++  +C  G           ++ EA  LF+ M+ +  +P+ V +  
Sbjct: 240 QGI--PPNVVTYSSILHGFCNLG-----------QLNEATSLFKQMIGRNVMPNTVTFTI 286

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG CK   I  A  +F+ M + G  P+  TY++ +  Y + +++D+A ++   M    
Sbjct: 287 LVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKG 346

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
              P+   Y  +I+  C++ R+ EA+  L+E+ D    P   TY  +      A  P +
Sbjct: 347 FA-PSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQV 404



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 14/218 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+ A +   +M +   +P    +  ++N LC       A  L +++   GF   P + TY
Sbjct: 122 VHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGF--APSLITY 179

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T +I   CK G  T            A  L + M  KG  PDVVAYN +ID  CK  R  
Sbjct: 180 TTIIKGLCKIGHTT-----------NALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRAN 228

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A+  F +M  +G  PN VTY+S +  +  + ++++A  + ++M   N  +P + ++T +
Sbjct: 229 EAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNV-MPNTVTFTIL 287

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +  LC+ G +LEAR     + + G  P  YTY  + D 
Sbjct: 288 VDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDG 325



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 14/242 (5%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G   +  T + T L+  L +EG++ EA   F  M +    PD Y Y+ +++  C     +
Sbjct: 274 GRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMD 333

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A+ L + M   GF   P V  Y ILI+ +CK            RR+ EA  L   M  +
Sbjct: 334 EAQKLFDIMVGKGF--APSVRVYNILINGHCK-----------SRRLNEAKTLLSEMYDR 380

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
              PD V Y+ L+ G C+  R + A +LF +M   G +P+ +TY+  +        +D+A
Sbjct: 381 DLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEA 440

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
             +++ MQ  +   P    Y  +I  +C  G++  AR+  + L   G  P   TY ++  
Sbjct: 441 FRLLKAMQE-SKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMIS 499

Query: 402 AL 403
            L
Sbjct: 500 GL 501



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 111/222 (50%), Gaps = 16/222 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G +NEA + F +M      P+   + ++++ LC+ G   +AR + E M   G    PD Y
Sbjct: 260 GQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVE--PDAY 317

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY+ L+  YC           ++ ++ EA  LF +M+ KGF P V  YN LI+G CK+ R
Sbjct: 318 TYSALMDGYC-----------LQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRR 366

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSY 361
           +  A  L  +M  +   P+ VTY++ ++ +        A ++ ++M   ++G +P S +Y
Sbjct: 367 LNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEM--CSYGLLPDSITY 424

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + ++  LC+ G + EA   L  + +    P    Y ++   +
Sbjct: 425 SILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGM 466



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 93/217 (42%), Gaps = 14/217 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +NEA      M      PD   Y+ ++   C+ G    A+ L ++M   G    PD  TY
Sbjct: 367 LNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLL--PDSITY 424

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           +IL+   CK+G            + EA  L + M      P +  YN LI G C   ++E
Sbjct: 425 SILLDGLCKHG-----------HLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLE 473

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A ELF ++  KG  P+ VTY   I         ++A EM RKM  +N  +P S +Y   
Sbjct: 474 AARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMV-VNGCLPNSCTYNVA 532

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           I      G    A   + E+V  G      T++++ D
Sbjct: 533 IQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLD 569



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 13/180 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + L++   + G    A   F  M  +   PD   Y+++++ LC+ G+ ++A  LL+
Sbjct: 386 TVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLK 445

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M+    +  P +  Y ILI   C +G           ++  A  LF  +  KG  P VV
Sbjct: 446 AMQES--KIEPHICIYNILIQGMCNFG-----------KLEAARELFSNLFVKGIQPSVV 492

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  +I G  K      A E+F  M   GC+PN  TYN  I+ +    +   A+ ++ +M
Sbjct: 493 TYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEM 552



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 47/219 (21%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V +A+A+F ++   R  P V  +N ++ +L +  +++    L +QM+L   R  P+VYT 
Sbjct: 50  VADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIR--PNVYTL 107

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           TILI+  C        R  +         +F+L    G  P  V +  L++G C   +I 
Sbjct: 108 TILINCLCHSN-----RDHVHFAFSALGKMFKL----GLQPTHVTFGTLLNGLCSKAKII 158

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A++LFD++ K G  P+ +TY                                    T I
Sbjct: 159 DAVKLFDEIGKMGFAPSLITY------------------------------------TTI 182

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           I  LC+ G    A   L ++ + G  P    Y  V D+L
Sbjct: 183 IKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSL 221



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 13/166 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L  + + + L+  L + G ++EA      M++ +  P +  YN++I  +C  G    A
Sbjct: 416 GLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAA 475

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           R L   + + G +  P V TYT++IS   K G+             EA  +FR M+  G 
Sbjct: 476 RELFSNLFVKGIQ--PSVVTYTVMISGLLKEGLSN-----------EACEMFRKMVVNGC 522

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +P+   YN  I G  +      A+ L ++M  +G   +  T+   +
Sbjct: 523 LPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLL 568


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 130/282 (46%), Gaps = 32/282 (11%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFR 199
           VF+R  ++     + +DM + G   LV  + + T L+      G + EAL     M +  
Sbjct: 115 VFSRNRHLDQALVYFRDMKKFG---LVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQG 171

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C  DV AYN ++N LC+      A  L ++M   G    PD YT+T LI  +C+ G  T 
Sbjct: 172 CVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG--ALPDFYTFTTLIHGHCQDGNMT- 228

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                     +A  LF  M  +   PD+VAYN LIDG CK   +E+A EL+D M  +   
Sbjct: 229 ----------KALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIF 278

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           PN +TY   I  Y  V  + +A  +   M  +  G+ PT  +   +I   C +G   +A 
Sbjct: 279 PNHITYGILINAYCSVGHVSEAFRLWDVM--IEKGIKPTLVTCNTVIKGYCRSGDSSKAD 336

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
           +FL  ++  G  P   +Y             +L++DG R+ +
Sbjct: 337 EFLGRMIAKGVAPDHISYN------------TLINDGKRRSV 366



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 120/255 (47%), Gaps = 20/255 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI     EGL+ EA      M     +P ++ YN +IN LC+ G + +A+ +L +M   G
Sbjct: 7   LIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIG 66

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD  TY  L+   C+           R    EA  +F  ML +G VPD+V+++ L+
Sbjct: 67  L--SPDTTTYNTLLVESCR-----------RDNFSEAKEIFGEMLRQGVVPDLVSFSSLM 113

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
               +   +++AL  F DM K G +P+ V Y   +  Y     + +A+++  +M  L  G
Sbjct: 114 AVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEM--LEQG 171

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEP 409
            V    +Y  I++ LC+   + +A     E+V+ G++P  YT+  +    C   N  +  
Sbjct: 172 CVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKAL 231

Query: 410 SLLDDGLRKRIRDGI 424
           SL     ++ I+  I
Sbjct: 232 SLFGTMTQRNIKPDI 246



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 14/198 (7%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            YN +I A CR G   +A  ++  M   G +  P ++TY  +I+  CK G          
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLK--PSLFTYNAIINGLCKKG---------- 50

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            R   A  +   ML  G  PD   YN L+   C+      A E+F +M ++G +P+ V++
Sbjct: 51  -RYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSF 109

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           +S +  +S    +D+A+   R M+     VP +  YT ++H  C  G +LEA     E++
Sbjct: 110 SSLMAVFSRNRHLDQALVYFRDMKKFGL-VPDNVIYTVLMHGYCRNGNMLEALKIRDEML 168

Query: 386 DGGSVPREYTYKLVCDAL 403
           + G V     Y  + + L
Sbjct: 169 EQGCVLDVIAYNTILNGL 186



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           +V YN LI   C+   +E A E+ + M  KG  P+  TYN+ I          +A  ++ 
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           +M N+    P +++Y  ++   C      EA++   E++  G VP
Sbjct: 61  EMLNIGLS-PDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVP 104


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 140/297 (47%), Gaps = 18/297 (6%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           N    F+ W  +   + H+    K M  +  +      +W  +++M RR N + V+    
Sbjct: 103 NLGYRFFVWASKQPGYRHSYEVYKAMIKILGKMRQFGAVWALIEEM-RRENPQFVSPYVF 161

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             L++      +V +A+     M ++ C PD + +  +++ALC+ G+  +A  L E M +
Sbjct: 162 VVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRI 221

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              R  P +  +T L+  +C+ G           ++ EA ++   +   GF PD+V YN 
Sbjct: 222 ---RFTPTLKHFTSLLYGWCREG-----------KLMEAKYVLVQIREAGFEPDIVVYNN 267

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+ G     ++  A +L  +M +K C PN +++ + I+      ++++A+ +  +MQ+  
Sbjct: 268 LLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSC- 326

Query: 353 HGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            G P  + +YT +I   C+ G++ +  + L  ++  G +P   TY  +  A    EE
Sbjct: 327 -GCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEE 382



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 115/293 (39%), Gaps = 55/293 (18%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           +A    +   +D LK+M R+     V   S T LI+ L  +  + EA+  F+ M+   C 
Sbjct: 272 YAAAGKMVDAYDLLKEMRRKECEPNVM--SFTTLIQALCAKKKMEEAMRVFFEMQSCGCP 329

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            D   Y  +I+  C+ G  +K   LL+ M   G    P+  TY  +++++ K        
Sbjct: 330 ADAVTYTTLISGFCKWGKISKGYELLDNMIQQGH--IPNPMTYLHIMAAHEK-------- 379

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              +  + E   L   M   G  PD+  YN +I   CK   I+  + ++++M   G  P 
Sbjct: 380 ---KEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPG 436

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY-------------------- 361
             T+   I  +     + +A E  ++M  +  G+ ++  Y                    
Sbjct: 437 LDTFVIMIHGFLSQRCLVEACEFFKEM--VGRGLLSAPQYGTLKELLNSLLRAEKLEMSK 494

Query: 362 ------------------TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
                             T  IHAL   G V EA  +  +++D G +P+  T+
Sbjct: 495 DVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGVMPQPDTF 547



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 25/220 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + E +     M++  C PD+  YN+VI   C++G   +   +  +ME  G    P + T+
Sbjct: 383 LEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGL--SPGLDTF 440

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV--PDVVAYNCLIDGCCKTYR 302
            I+I  +             +R + EA   F+ M+ +G +  P       L++   +  +
Sbjct: 441 VIMIHGFLS-----------QRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLLRAEK 489

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           +E + +++  +  KGC  N   +  +I        + +A      M  ++ GV P   ++
Sbjct: 490 LEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDM--MDAGVMPQPDTF 547

Query: 362 TPIIHALCEAGRVLEARDFLAEL---VDGGSVPREYTYKL 398
             ++  L    R L  R   AE+   V   +  RE T+K+
Sbjct: 548 AKLMRGL----RKLYNRQIAAEITEKVRKMAAEREMTFKM 583


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 106/234 (45%), Gaps = 16/234 (6%)

Query: 172 VTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           VTC I V     EG ++ A+  F  M+   C P+V+ YN ++   C  G   KA  LL+Q
Sbjct: 301 VTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQ 360

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M   G    PDV TY +LI   C           I   I  A  L RLM   G   D   
Sbjct: 361 MRECGVE--PDVVTYNLLIRGQC-----------IDGHIGSAFRLLRLMEGNGLAADQYT 407

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN LID  CKT +++ A  LFD +  +G  PN VT+N+ I       + D A   +  M 
Sbjct: 408 YNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMI 467

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  +  P + +Y+P I  LC+     E   F+ E++     P    Y +V + L
Sbjct: 468 SAGYA-PDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRL 520



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 128/304 (42%), Gaps = 34/304 (11%)

Query: 132 EMTCKEMGIVFARGNNVKGLWD---------FLKDMSRRGNGELVTTSSVTCLIKVLGEE 182
           EMT  +M   +     VKGL D          L+ M   G     TT +   L+ +   E
Sbjct: 224 EMTQPDM---YTHAALVKGLCDAGRGEEGLCMLQKMKELGWRP--TTRAYAALVDLWCRE 278

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
               EA      M      P V    +V+NA CR G  + A  + E M   G  C P+V+
Sbjct: 279 QKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKG--CEPNVW 336

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY  ++  +C  G           ++++A  L   M   G  PDVV YN LI G C    
Sbjct: 337 TYNAIVQGFCNAG-----------KVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGH 385

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           I  A  L   M   G   ++ TYN  I       ++D+A  +   ++    G+ P S ++
Sbjct: 386 IGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLE--YRGIRPNSVTF 443

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLR 417
             +I+ LC+AG+   A  FL  ++  G  P  YTY    + +C    + E    +D+ L+
Sbjct: 444 NTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQ 503

Query: 418 KRIR 421
           K ++
Sbjct: 504 KDVK 507



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 126/282 (44%), Gaps = 25/282 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + R   ++   D    M  RG  +     S   LI+   E G ++EAL  F  M Q    
Sbjct: 174 YCRTQQLEVAHDLFCKMPFRGFSQ--DAVSYAALIEGFCEAGRIDEALELFREMTQ---- 227

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+Y +  ++  LC  G   +   +L++M+  G+R  P    Y  L+  +C+        
Sbjct: 228 PDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWR--PTTRAYAALVDLWCR-------- 277

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               ++  EA  +   M   G +P VV    +++  C+  R+  A+ +F+ M  KGC PN
Sbjct: 278 ---EQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPN 334

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
             TYN+ ++ +    ++ KA+ ++ +M+    GV P   +Y  +I   C  G +  A   
Sbjct: 335 VWTYNAIVQGFCNAGKVYKAMALLDQMREC--GVEPDVVTYNLLIRGQCIDGHIGSAFRL 392

Query: 381 LAELVDGGSVPREYTYKLVCDAL---NAAEEPSLLDDGLRKR 419
           L  +   G    +YTY ++ DAL      +E   L DGL  R
Sbjct: 393 LRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYR 434



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 18/201 (8%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P    YN +I ALCR  +   A+  L  M   G+R  PD +T+  LI  YC+        
Sbjct: 127 PTGATYNALIRALCRRADLRHAQRYLSLMVRSGWR--PDAFTFNSLILGYCR-------- 176

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               +++  A+ LF  M F+GF  D V+Y  LI+G C+  RI+ ALELF +M +    P+
Sbjct: 177 ---TQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ----PD 229

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             T+ + ++        ++ + M++KM+ L    PT+ +Y  ++   C   +  EA   L
Sbjct: 230 MYTHAALVKGLCDAGRGEEGLCMLQKMKELGWR-PTTRAYAALVDLWCREQKAEEAEKIL 288

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+ D G +P   T  +V +A
Sbjct: 289 NEMFDSGLMPCVVTCTIVVNA 309



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 20/238 (8%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           GNG      +   LI  L + G V+EA + F  ++    RP+   +N VIN LC+ G F+
Sbjct: 398 GNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFD 457

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKY-GMQTGCRKAIRRRIWEANHLFRL--M 278
            A   LE M   G+   PD YTY+  I + CK  G Q G              LF +  M
Sbjct: 458 VACTFLENMISAGY--APDTYTYSPFIENLCKTKGSQEG--------------LFFIDEM 501

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           L K   P  V Y  +I+          A  ++  M  +GC P+ VTY + +R Y     +
Sbjct: 502 LQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRL 561

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           D+A  ++ +M+     +  + +Y  +I      G+   A   L  +    S+P  +T+
Sbjct: 562 DEAENVVTEMKKC-RTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTF 618



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 124/304 (40%), Gaps = 49/304 (16%)

Query: 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF 192
           +TC  +   + R   + G     + M  +G    V T +   +++     G V +A+A  
Sbjct: 301 VTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNA--IVQGFCNAGKVYKAMALL 358

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
            +M++    PDV  YN++I   C  G+   A  LL  ME  G     D YTY +LI + C
Sbjct: 359 DQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAA--DQYTYNVLIDALC 416

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           K G           ++ EA  LF  + ++G  P+ V +N +I+G CK  + + A    ++
Sbjct: 417 KTG-----------KVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLEN 465

Query: 313 MNKKGCIPNRVTYNSFIRY----------------------------YSVV-----NEID 339
           M   G  P+  TY+ FI                              Y++V     NE +
Sbjct: 466 MISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERN 525

Query: 340 KAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
             +      Q ++ G  P   +YT  + A C  GR+ EA + + E+    ++     Y  
Sbjct: 526 YGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNT 585

Query: 399 VCDA 402
           + D 
Sbjct: 586 LIDG 589


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 118/235 (50%), Gaps = 18/235 (7%)

Query: 172 VTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           VTC  LI    +E  V +A+  F  M+   C+PDV  YNV+I   C+ G  ++A   L++
Sbjct: 207 VTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKK 266

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
             LP + C  DV ++ +++ S C  G           R  +A  L   ML KG  P VV 
Sbjct: 267 --LPSYGCQSDVISHNMILRSLCSGG-----------RWMDAMKLLATMLRKGCFPSVVT 313

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           +N LI+  C+   + +AL + + M K G  PN  ++N  I+ +     ID+AIE +  M 
Sbjct: 314 FNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIM- 372

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            ++ G  P   +Y  ++ ALC+ G+V +A   L++L   G  P   +Y  V D L
Sbjct: 373 -VSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGL 426



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 149/322 (46%), Gaps = 49/322 (15%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           + TCKE G+    G  +K       +M  +G    V T +V  LIK   +EG ++EA+  
Sbjct: 214 DATCKESGV----GQAMK----LFNEMRGKGCKPDVVTYNV--LIKGFCKEGRLDEAIIF 263

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
             ++  + C+ DV ++N+++ +LC  G +  A  LL  M   G  C P V T+ ILI+  
Sbjct: 264 LKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKG--CFPSVVTFNILINFL 321

Query: 252 CKYGM---------------------------QTGC-RKAIRRRIWEANHLFRLMLFKGF 283
           C+ G+                           Q  C RK I R I    HL  +M+ +G 
Sbjct: 322 CQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAI---EHL-EIMVSRGC 377

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PD+V YN L+   CK  +++ A+ +   ++ KGC P+ ++YN+ I     V + + A+E
Sbjct: 378 YPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVE 437

Query: 344 MMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           ++ +M  + L    P   + T ++  L   G+V EA  F   L   G  P  + Y  +  
Sbjct: 438 LLEEMCYKGLK---PDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMM 494

Query: 402 ALNAAEEPSLLDDGLRKRIRDG 423
            L  A++ SL  D L   + +G
Sbjct: 495 GLCKAQQTSLAIDFLVDMVANG 516



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 21/251 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL+ M+ +G  ++    + T LI+   + G    A      +++     D  +YNV+INA
Sbjct: 91  FLEYMTNKG--KIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINA 148

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+ G   +A  +L+   +      P+  TY  ++ S C  G           ++ +A  
Sbjct: 149 YCKSGEIEEALRVLDHTSVA-----PNAATYDAVLCSLCDRG-----------KLKQAMQ 192

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +    L     PDVV    LID  CK   + +A++LF++M  KGC P+ VTYN  I+ + 
Sbjct: 193 VLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFC 252

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               +D+AI  ++K+   ++G  +   S+  I+ +LC  GR ++A   LA ++  G  P 
Sbjct: 253 KEGRLDEAIIFLKKLP--SYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPS 310

Query: 393 EYTYKLVCDAL 403
             T+ ++ + L
Sbjct: 311 VVTFNILINFL 321



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 14/217 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++ A+     M    C PD+  YN+++ ALC+ G  + A  +L Q+   G  C P + +Y
Sbjct: 362 IDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKG--CSPSLISY 419

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             +I    K G           +   A  L   M +KG  PD++    ++ G  +  ++ 
Sbjct: 420 NTVIDGLLKVG-----------KAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVH 468

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A++ F  +   G  PN   YNS +       +   AI+ +  M   N   PT +SYT +
Sbjct: 469 EAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMV-ANGCKPTEASYTTL 527

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           I  +   G   EA     EL   G V +    K+  D
Sbjct: 528 IKGITYEGLAEEASKLSNELYSRGLVKKSLIVKVSQD 564



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 18/191 (9%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L+ M  RG    + T ++  L+  L ++G V++A+    ++    C P + +YN VI+
Sbjct: 367 EHLEIMVSRGCYPDIVTYNI--LLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVID 424

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            L +VG    A  LLE+M   G +  PD+ T T ++    + G           ++ EA 
Sbjct: 425 GLLKVGKAELAVELLEEMCYKGLK--PDLITCTSVVGGLSREG-----------KVHEAI 471

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR-- 330
             F  +   G  P+   YN ++ G CK  +   A++   DM   GC P   +Y + I+  
Sbjct: 472 KFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGI 531

Query: 331 -YYSVVNEIDK 340
            Y  +  E  K
Sbjct: 532 TYEGLAEEASK 542



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           CR      + E +     M  KG +PDVVA   LI   CK  R + A  +   + + G +
Sbjct: 77  CRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAV 136

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG--VPTSSSYTPIIHALCEAGRVLEA 377
            +  +YN  I  Y    EI++A+ +      L+H    P +++Y  ++ +LC+ G++ +A
Sbjct: 137 IDANSYNVLINAYCKSGEIEEALRV------LDHTSVAPNAATYDAVLCSLCDRGKLKQA 190

Query: 378 RDFLAELVDGGSVPREYTYKLVCDA 402
              L   +     P   T  ++ DA
Sbjct: 191 MQVLDRQLQSKCYPDVVTCTVLIDA 215


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 111/216 (51%), Gaps = 14/216 (6%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A + F  M +F   P++Y YN +I+  C+ GN  +A  LL +ME       PDV+TYTIL
Sbjct: 323 ARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEME--SLNLSPDVFTYTIL 380

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I+  C           I  ++ EAN LF+ M  +   P    YN LI G CK Y +E+AL
Sbjct: 381 INGLC-----------IEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQAL 429

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           +L  +M   G  PN +T+++ I  Y  V +I  A+ +  +M  +   VP   +YT +I A
Sbjct: 430 DLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEM-TIKGIVPDVVTYTALIDA 488

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +   + EA    +++++ G  P ++T+  + D  
Sbjct: 489 HFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGF 524



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 14/216 (6%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           ++GL ++       M     +P+VY Y + I  LCR     +A  + E M+  G    P+
Sbjct: 211 KQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVL--PN 268

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           +YTY+ +I  YCK G            + +A  L++ +L    +P+VV +  L+DG CK 
Sbjct: 269 LYTYSAMIDGYCKTG-----------NVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKA 317

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
             +  A  LF  M K G  PN   YN  I  +     + +A+ ++ +M++LN   P   +
Sbjct: 318 RELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLS-PDVFT 376

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           YT +I+ LC   +V EA     ++ +    P   TY
Sbjct: 377 YTILINGLCIEDQVAEANRLFQKMKNERIFPSSATY 412



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 109/264 (41%), Gaps = 31/264 (11%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI  L  E  V EA   F +MK  R  P    YN +I+  C+  N  +A  L  +M  
Sbjct: 378 TILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTA 437

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P++ T++ LI  YC             R I  A  L+  M  KG VPDVV Y  
Sbjct: 438 SGVE--PNIITFSTLIDGYCNV-----------RDIKAAMGLYFEMTIKGIVPDVVTYTA 484

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LID   K   ++ AL L+ DM + G  PN  T+   +  +     +  AI+  ++  N  
Sbjct: 485 LIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQE-NNQQ 543

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY---------------- 396
                   +T +I  LC+ G +L A  F +++   G  P   +Y                
Sbjct: 544 RSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDT 603

Query: 397 -KLVCDALNAAEEPSLLDDGLRKR 419
             L CD +     P+LL + L  R
Sbjct: 604 MMLQCDMIKTGILPNLLVNQLLAR 627



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 16/203 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV+ Y V+     + G ++K   LL++M   G +  P+VY YTI I   C+        
Sbjct: 197 PDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIK--PNVYIYTIYILDLCR-------- 246

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  +F LM   G +P++  Y+ +IDG CKT  + +A  L+ ++     +PN
Sbjct: 247 ---DNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPN 303

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            V + + +  +    E+  A  +   M  +  GV P    Y  +IH  C++G +LEA   
Sbjct: 304 VVVFGTLVDGFCKARELVTARSLFVHM--VKFGVDPNLYVYNCLIHGHCKSGNMLEAVGL 361

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L+E+      P  +TY ++ + L
Sbjct: 362 LSEMESLNLSPDVFTYTILINGL 384



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 14/224 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           ++++   LI    +E  + +AL     M      P++  ++ +I+  C V +   A  L 
Sbjct: 408 SSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLY 467

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            +M + G    PDV TYT LI ++ K   +   ++A+R        L+  ML  G  P+ 
Sbjct: 468 FEMTIKGI--VPDVVTYTALIDAHFK---EANMKEALR--------LYSDMLEAGIHPND 514

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             + CL+DG  K  R+  A++ + + N++    N V +   I        I +A      
Sbjct: 515 HTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSD 574

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           M++     P   SY  ++    +  R+ +      +++  G +P
Sbjct: 575 MRSCGI-TPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILP 617



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 66/181 (36%), Gaps = 26/181 (14%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +  A+  ++ M      PDV  Y  +I+A  +  N  +A  L   M   G    P+ +T+
Sbjct: 460 IKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIH--PNDHTF 517

Query: 245 TILISSYCKYG-------------MQTGCRKAI-----------RRRIWEANHLFRLMLF 280
             L+  + K G              Q  C   +              I  A+  F  M  
Sbjct: 518 ACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRS 577

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  PD+ +Y  ++ G  +  RI   + L  DM K G +PN +      R+Y     +  
Sbjct: 578 CGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLLVNQLLARFYQANGYVKS 637

Query: 341 A 341
           A
Sbjct: 638 A 638


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 117/250 (46%), Gaps = 37/250 (14%)

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG------------------ 218
           K +  + +++EA+  F +M+Q    P+V  Y  +I+ALC++G                  
Sbjct: 438 KGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYG 497

Query: 219 -----NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
                 + KA  L+ +M   G R   DV  +  L+   C+ G           R+ EA  
Sbjct: 498 LCTVEKWEKAEELVFEMLDQGIRL--DVVVFNTLMCDLCREG-----------RVMEAQR 544

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L  LML  G  PDV++YN L+DG C T R + A +L D M   G  PN  TYN+ +  Y 
Sbjct: 545 LIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYC 604

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
               ID A  ++R+M  +N   P   +Y  I+H L + GR  EA++    +++  +    
Sbjct: 605 KARRIDDAYSLLREML-MNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDM 663

Query: 394 YTYKLVCDAL 403
           YTY ++ + L
Sbjct: 664 YTYNIILNGL 673



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 22/232 (9%)

Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL- 232
           L+K L +   ++EA     +RM +F C P+V +YN ++   C   N N+A   LE + + 
Sbjct: 236 LLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFC---NENRAEEALELLHVM 292

Query: 233 ---PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
               G  CPPDV +Y  +I+ + + G           ++ +A +LF  M+ +G  PDVV 
Sbjct: 293 ADDQGLSCPPDVVSYNTVINGFFREG-----------QVDKAYNLFLQMIDRGIPPDVVT 341

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN +IDG CK   ++RA  +F  M  KG  P+  TYN  I  Y    +  + + ++ +M 
Sbjct: 342 YNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMS 401

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
              H + P    Y  ++  LC+ GR  EAR+    ++  G  P     + VC
Sbjct: 402 --THDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDAMIDEAVC 451



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 33/239 (13%)

Query: 188 ALATFYRMKQF-----RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGF------ 235
           +LA+   +K F       RP  V A+N ++ A+ R     +   L  Q+ +  F      
Sbjct: 129 SLASHDALKLFDLLLPHARPASVTAFNHLLTAVSRASG--RHSTLESQLGISLFDRMVRE 186

Query: 236 ---RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +  PD  TY+ILI  +C+ G           R+     +F L+L  G+  + + +N 
Sbjct: 187 CSDKVAPDRCTYSILIGCFCRMG-----------RLEHGFAVFGLILKTGWRVNHIVFNQ 235

Query: 293 LIDGCCKTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
           L+ G C   R++ A   L   M + GC PN V+YN+ ++ +   N  ++A+E++  M + 
Sbjct: 236 LLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMAD- 294

Query: 352 NHGV---PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           + G+   P   SY  +I+     G+V +A +   +++D G  P   TY  V D L  A+
Sbjct: 295 DQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQ 353



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 104/264 (39%), Gaps = 56/264 (21%)

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           EG V++A   F +M      PDV  YN VI+ LC+    ++A+ + +QM   G +  P  
Sbjct: 317 EGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVK--PSN 374

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            TY  LI  Y    + TG  K + R + E       M      PD   Y  L+D  CK  
Sbjct: 375 GTYNCLIHGY----LSTGKWKEVVRLLEE-------MSTHDLEPDCFIYALLLDYLCKNG 423

Query: 302 R---------------------IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           R                     I+ A+ +FD M ++G  PN V Y + I     +  +D 
Sbjct: 424 RCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDD 483

Query: 341 AIEMMRKMQNLNHGVPTSSS----------------------YTPIIHALCEAGRVLEAR 378
           AI    +M N  +G+ T                         +  ++  LC  GRV+EA+
Sbjct: 484 AILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQ 543

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
             +  ++  G  P   +Y  + D 
Sbjct: 544 RLIELMLRVGVRPDVISYNTLVDG 567



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 15/230 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           NE T   +   + +   +   +  L++M   G    V T +   ++  L + G  +EA  
Sbjct: 592 NEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNT--ILHGLFQTGRFSEAKE 649

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            +  M   R + D+Y YN+++N LC+    ++A  + + +   G +    + T+ I+I +
Sbjct: 650 LYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQL--HIITFNIMIGA 707

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
             K G +            +A  LF  +   G VPDV  Y  + +   K   +E    LF
Sbjct: 708 LLKGGKKE-----------DAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLF 756

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
             M + G  PN    N+ +R +    +I +A   + K+   N  +  S++
Sbjct: 757 SAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTA 806


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 119/258 (46%), Gaps = 27/258 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L + G    AL    +M++   +  V  YN +I+ LC+ G+   A+ L  +M   G
Sbjct: 47  IINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKG 106

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------------------------RIWE 270
               PDV TY+ +I S+C+ G  T   + +R                         ++ E
Sbjct: 107 IF--PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSE 164

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  ++  ML +G  P  + YN +IDG CK  R+  A  + D M  K C P+ VT+++ I 
Sbjct: 165 AEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLIN 224

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            Y     +D  +E+  +M      V  + +YT +IH  C+ G +  A+D L  ++  G  
Sbjct: 225 GYCKAKRVDNGMEIFCEMHRRGI-VANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVA 283

Query: 391 PREYTYKLVCDALNAAEE 408
           P   T++ +  +L + +E
Sbjct: 284 PNYITFQSMLASLCSKKE 301



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 16/219 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I      G   +A      M + +  PDV  ++ +INAL + G  ++A  +   M   G
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRG 176

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P   TY  +I  +CK           + R+ +A  +   M  K   PDVV ++ LI
Sbjct: 177 IF--PTTITYNSMIDGFCK-----------QDRLNDAKRMLDSMASKSCSPDVVTFSTLI 223

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G CK  R++  +E+F +M+++G + N VTY + I  +  V ++D A +++  M  ++ G
Sbjct: 224 NGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVM--ISSG 281

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
           V P   ++  ++ +LC    + +A   L +L      PR
Sbjct: 282 VAPNYITFQSMLASLCSKKELRKAFAILEDLQKSEVCPR 320



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 101/223 (45%), Gaps = 17/223 (7%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVN 186
            F + +T   M   F R          L+DM  R+ N ++VT S+   LI  L +EG V+
Sbjct: 107 IFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSA---LINALVKEGKVS 163

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EA   +  M +    P    YN +I+  C+    N A+ +L+ M      C PDV T++ 
Sbjct: 164 EAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSM--ASKSCSPDVVTFST 221

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI+ YCK            +R+     +F  M  +G V + V Y  LI G C+   ++ A
Sbjct: 222 LINGYCK-----------AKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAA 270

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
            +L + M   G  PN +T+ S +       E+ KA  ++  +Q
Sbjct: 271 QDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQ 313



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 5/126 (3%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+  G  PDVV +  L++G C   R+ +AL L D M ++G  P    Y + I     + +
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            + A+ ++ KM+   H       Y  II  LC+ G  + A++   E+ D G  P   TY 
Sbjct: 57  TESALNLLSKMEE-THIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYS 115

Query: 398 LVCDAL 403
            + D+ 
Sbjct: 116 GMIDSF 121


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 20/229 (8%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M Q  C+P V  Y V++ A+C+   F +A  +L++M   G  C P++ TY ++I+  C+ 
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKG--CTPNIVTYNVIINGMCRE 235

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           R+ +A  +   +   GF PD+V+Y  ++ G C   R +    LF +M 
Sbjct: 236 G-----------RVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV 284

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGR 373
            K C+PN VT++  +R++     +++AI+++++M    HG  P ++    +I+A+C+ GR
Sbjct: 285 DKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMS--QHGCTPNTTLCNIVINAICKQGR 342

Query: 374 VLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRK 418
           V +A DFL  +   G  P   +Y  V    C A        LL + +RK
Sbjct: 343 VDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRK 391



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 140/302 (46%), Gaps = 26/302 (8%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           NE+T   +   F RG  V+     L+ MS+ G     T  ++  +I  + ++G V++A  
Sbjct: 291 NEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNI--VINAICKQGRVDDAYD 348

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
               M  + C PD  +Y  V+  LCR G +  A+ LL +M      CPP+  T+   I  
Sbjct: 349 FLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRK--NCPPNEVTFNTFICI 406

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            C+ G+           I +A  L  LM   G    +V YN L+ G C   R++ ALELF
Sbjct: 407 LCQKGL-----------IEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELF 455

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALC 369
           +++    C PN +TY + +        +D A E++ +M  +    P ++ ++  ++   C
Sbjct: 456 NNLP---CEPNTITYTTLLTGLCHAERLDAAAELLAEM--IQKDCPLNAVTFNVLVSFFC 510

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRKRIR-DGI 424
           + G V EA + + ++++ G  P   T+  + D +    N+ E   LL   + K +  D I
Sbjct: 511 QKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTI 570

Query: 425 EY 426
            Y
Sbjct: 571 TY 572



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 16/239 (6%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M +RG    V T +V  L++ + +     EA+     M+   C P++  YNV+IN +CR 
Sbjct: 178 MLQRGCQPSVVTYTV--LLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCRE 235

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G  + A+ +L ++   GF+  PD+ +YT ++   C             RR  +   LF  
Sbjct: 236 GRVDDAKEILNRLSSYGFQ--PDIVSYTTVLKGLCA-----------ARRWDDVKVLFAE 282

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+ K  VP+ V ++ L+   C+   +ERA+++   M++ GC PN    N  I        
Sbjct: 283 MVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGR 342

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +D A + +  M  +    P + SYT ++  LC AGR   A++ L E+V     P E T+
Sbjct: 343 VDDAYDFLNNM-GMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTF 400



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 144/328 (43%), Gaps = 33/328 (10%)

Query: 86  EAYNIANNVLVLGPAAYRDPQKVTL-----GLNKATEFYHWVERFFDFFH-----NEMTC 135
           +AY+  NN+ + G     +P  ++      GL +A  + H  E   +        NE+T 
Sbjct: 345 DAYDFLNNMGMYG----CNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTF 400

Query: 136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM 195
                +  +   ++     ++ M   G    + T +   L+     +G V+ AL  F  +
Sbjct: 401 NTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNA--LVHGFCVQGRVDSALELFNNL 458

Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
               C P+   Y  ++  LC     + A  LL +M      CP +  T+ +L+S +C+ G
Sbjct: 459 P---CEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKD--CPLNAVTFNVLVSFFCQKG 513

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                       + EA  L   M+  G  P+++ +N L+DG  K    E ALEL   +  
Sbjct: 514 F-----------VEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVS 562

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
           KG   + +TY+S +   S  +  ++AI+M+  +Q++    P    Y  I+ ALC+     
Sbjct: 563 KGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMR-PKVGMYNKILFALCKRCETD 621

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           +A DF A +V  G +P E TY ++ + L
Sbjct: 622 QAIDFFAYMVSNGCMPNESTYIILIEGL 649



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 128/300 (42%), Gaps = 40/300 (13%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           E  CK  G  F    NV      L +M  +G    + T +V  +I  +  EG V++A   
Sbjct: 195 EAVCKSSG--FGEAMNV------LDEMRAKGCTPNIVTYNV--IINGMCREGRVDDAKEI 244

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
             R+  +  +PD+ +Y  V+  LC    ++  + L  +M     +C P+  T+ +L+  +
Sbjct: 245 LNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV--DKKCVPNEVTFDMLVRFF 302

Query: 252 CKYGM------------QTGCR----------KAI--RRRIWEANHLFRLMLFKGFVPDV 287
           C+ GM            Q GC            AI  + R+ +A      M   G  PD 
Sbjct: 303 CRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDT 362

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           ++Y  ++ G C+  R E A EL  +M +K C PN VT+N+FI        I++AI+++  
Sbjct: 363 ISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIEL 422

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           M      V    +Y  ++H  C  GRV  A +    L      P   TY  +   L  AE
Sbjct: 423 MPEYGCSVGI-VTYNALVHGFCVQGRVDSALELFNNL---PCEPNTITYTTLLTGLCHAE 478


>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02060, chloroplastic; Flags: Precursor
 gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 140/301 (46%), Gaps = 27/301 (8%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL-VTTSSVTCLI 176
           F+ WV     F H E +   M     R  N+    +FL  + RR NG + +       LI
Sbjct: 87  FFDWVSNK-GFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLI 145

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
           +  G  GL  E++  F  MKQ    P V  +N +++ L + G    A  L ++M    + 
Sbjct: 146 RSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMR-RTYG 204

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
             PD YT+  LI+ +CK  M           + EA  +F+ M      PDVV YN +IDG
Sbjct: 205 VTPDSYTFNTLINGFCKNSM-----------VDEAFRIFKDMELYHCNPDVVTYNTIIDG 253

Query: 297 CCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            C+  +++ A  +   M KK     PN V+Y + +R Y +  EID+A+ +   M  L+ G
Sbjct: 254 LCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDM--LSRG 311

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV--PREYTYKLV----CDA--LNA 405
           + P + +Y  +I  L EA R  E +D L    D  +   P   T+ ++    CDA  L+A
Sbjct: 312 LKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDA 371

Query: 406 A 406
           A
Sbjct: 372 A 372



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 132/301 (43%), Gaps = 27/301 (8%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           + I+  RG    G+   L D  RR  G    + +   LI    +  +V+EA   F  M+ 
Sbjct: 180 LSILLKRGRT--GMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMEL 237

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
           + C PDV  YN +I+ LCR G    A  +L  M        P+V +YT L+  YC     
Sbjct: 238 YHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYC----- 292

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                 +++ I EA  +F  ML +G  P+ V YN LI G  + +R +   ++    N   
Sbjct: 293 ------MKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAF 346

Query: 318 CI--PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
               P+  T+N  I+ +     +D A+++ ++M N+    P S+SY+ +I  LC      
Sbjct: 347 TTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLH-PDSASYSVLIRTLCMRNEFD 405

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS---LLDDGLRKRIRDGIEYRFRQVM 432
            A     EL +   +      K  C  L AA  P    L  +G  K+     E  FRQ+M
Sbjct: 406 RAETLFNELFEKEVL----LGKDECKPLAAAYNPMFEYLCANGKTKQ----AEKVFRQLM 457

Query: 433 K 433
           K
Sbjct: 458 K 458



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 27/237 (11%)

Query: 148 VKGL-----WDFLKDMSRRGNGELVTTSSVTC----LIKVLGEEGLVNEALATFYRMKQF 198
           +KGL     +D +KD+   GN    T +   C    LIK   + G ++ A+  F  M   
Sbjct: 323 IKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNM 382

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQM-----ELPGFRCPPDVYTYTILISSYCK 253
           +  PD  +Y+V+I  LC    F++A  L  ++      L    C P    Y  +    C 
Sbjct: 383 KLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCA 442

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           +  +A  +FR ++ +G V D  +Y  LI G C+  + + A EL   M
Sbjct: 443 NG-----------KTKQAEKVFRQLMKRG-VQDPPSYKTLITGHCREGKFKPAYELLVLM 490

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
            ++  +P+  TY   I     + E   A + +++M   ++ +P ++++  ++  L +
Sbjct: 491 LRREFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRSSY-LPVATTFHSVLAELAK 546


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 121/252 (48%), Gaps = 35/252 (13%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +  +++M  +G   +  TS+ + +I +L     V+ A   F  MK     PDV+ Y ++I
Sbjct: 465 YSIIREMMSKGF--IPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILI 522

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           ++ C+VG   +AR   ++M   G  C P+V TYT LI +Y K            R++  A
Sbjct: 523 DSFCKVGLLQQARKWFDEMVRDG--CAPNVVTYTALIHAYLK-----------ARKMSSA 569

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
           N LF +ML +G +P+VV Y  LIDG CK+ +IE+A +++  M     IP+          
Sbjct: 570 NELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD---------- 619

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                     ++M  K+ + N   P   +Y  ++  LC+A +V EARD L  +   G  P
Sbjct: 620 ----------VDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEP 669

Query: 392 REYTYKLVCDAL 403
               Y  + D  
Sbjct: 670 NHIVYDALIDGF 681



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 14/200 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EA      M    C P+   Y+ +I+  C+VG  ++A+ +  +M   G+   P+VYTY
Sbjct: 652 VKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGY--GPNVYTY 709

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           + LI    K            +R+  A  +   ML     P+V+ Y  +IDG CK  + +
Sbjct: 710 SSLIDRLFK-----------DKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTD 758

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  L   M +KGC PN VTY + I  +    ++DK +E+MR+M       P   +Y  +
Sbjct: 759 EAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQM-GAKGCAPNFVTYRVL 817

Query: 365 IHALCEAGRVLEARDFLAEL 384
           I+  C AG + +A   L E+
Sbjct: 818 INHCCAAGLLDDAHQLLDEM 837



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 19/215 (8%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+++ Y  +++ LC+     +AR LL+ M + G  C P+   Y  LI  +CK G      
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEG--CEPNHIVYDALIDGFCKVG------ 685

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  +F  M  +G+ P+V  Y+ LID   K  R++ AL++   M +  C PN
Sbjct: 686 -----KLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPN 740

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN-HGVPTSSSYTPIIHALCEAGRVLEARDF 380
            + Y   I     V + D+A  +M  M+    H  P   +YT +I    +AG+V +  + 
Sbjct: 741 VIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCH--PNVVTYTAMIDGFGKAGKVDKCLEL 798

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415
           + ++   G  P   TY+++ +   AA    LLDD 
Sbjct: 799 MRQMGAKGCAPNFVTYRVLINHCCAA---GLLDDA 830



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 115/277 (41%), Gaps = 51/277 (18%)

Query: 142 FARGNNVKGLWDFLKDMSRRG--NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
             + + VK   D L  MS  G     +V  + +    KV    G ++EA   F +M +  
Sbjct: 646 LCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKV----GKLDEAQMVFTKMSERG 701

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             P+VY Y+ +I+ L +    + A  +L +M      C P+V  YT +I   CK G    
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS--CAPNVIIYTEMIDGLCKVG---- 755

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  +  EA  L  +M  KG  P+VV Y  +IDG  K  ++++ LEL   M  KGC 
Sbjct: 756 -------KTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCA 808

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL---------------------------- 351
           PN VTY   I +      +D A +++ +M+                              
Sbjct: 809 PNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLD 868

Query: 352 ----NHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
               N  VP   +Y  +I + C+AGR+  A +   E+
Sbjct: 869 EIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEM 905



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 10/225 (4%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C P    +N +I+A CR G+++ A  LL++M   G  C P    Y ILI   C      G
Sbjct: 365 CYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG--CQPGYVVYNILIGGIC------G 416

Query: 260 CRKAIRRRIWE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
             K     + E A   +  ML    V + V  + L    C   + E+A  +  +M  KG 
Sbjct: 417 NEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGF 476

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           IP+  TY+  I      +++D A  +  +M++ NH VP   +YT +I + C+ G + +AR
Sbjct: 477 IPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS-NHVVPDVFTYTILIDSFCKVGLLQQAR 535

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
            +  E+V  G  P   TY  +  A   A + S  ++     + +G
Sbjct: 536 KWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 27/229 (11%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I  L + G  +EA      M++  C P+V  Y  +I+   + G  +K   L+ QM  
Sbjct: 745 TEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGA 804

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAI---RRRIWEANHLFRLMLFKGF------ 283
            G  C P+  TY +LI+  C  G+     + +   ++  W  +      + +GF      
Sbjct: 805 KG--CAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFII 862

Query: 284 -------------VPDVVAYNCLIDGCCKTYRIERALELFDDMNK--KGCIPNRVTYNSF 328
                        VP + AY  LID  CK  R+E ALEL  +M+        ++  Y+S 
Sbjct: 863 SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSL 922

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
           I   S+ +++DKA E+   M     G+P  S +  ++  L    R  EA
Sbjct: 923 IESLSLASKVDKAFELYADMIK-RGGIPELSIFFYLVKGLIRINRWEEA 970



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 163/421 (38%), Gaps = 92/421 (21%)

Query: 48  VADVLKSIP------RFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAA 101
           V DVL  +       +FF  +    GRQ G+ H  P+   +L  E      N  V  P  
Sbjct: 132 VVDVLSLVKNPELGVKFFIWA----GRQIGYGHTGPVYHALL--EVLGCGGNDRV--PEQ 183

Query: 102 Y----RDPQKVTLG------LNKATEFYHW------VERFFDFFH--NEMTCKEMGIVFA 143
           +    RD  K  LG      + K      W      + R  D  +  + +T   +  VF 
Sbjct: 184 FLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFL 243

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
             + +   +   ++MS  G    +   ++ C + +L + G   EALA   + ++F+   D
Sbjct: 244 EADRLDTAYLVHREMSDSGFN--MDGYTLGCFVHLLCKAGRWREALALIEK-EEFKL--D 298

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              Y  +I+ LC    F +A   L +M      C P+V TY IL+          GC + 
Sbjct: 299 TVIYTQMISGLCEASLFEEAMDFLSRMRSSS--CIPNVVTYRILL---------CGCLR- 346

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
            +R++     +  +M+ +G  P    +N LI   C++     A +L   M   GC P  V
Sbjct: 347 -KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYV 405

Query: 324 TYNSFI--------------------------RYYSVVNEI---------------DKAI 342
            YN  I                            + V+N++               +KA 
Sbjct: 406 VYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAY 465

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            ++R+M +    +P +S+Y+ +I  LC A +V  A     E+     VP  +TY ++ D+
Sbjct: 466 SIIREMMSKGF-IPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDS 524

Query: 403 L 403
            
Sbjct: 525 F 525



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 148/397 (37%), Gaps = 79/397 (19%)

Query: 71  GFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFH 130
           GF H+T   Q+ L++    +   ++V   +  ++P+   LG+    +F+ W  R   + H
Sbjct: 111 GFGHKT---QKFLRQFREKLNETLVVDVLSLVKNPE---LGV----KFFIWAGRQIGYGH 160

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
                  +  V   G N +    FL+++  R   + +    +  LI+     GL N AL 
Sbjct: 161 TGPVYHALLEVLGCGGNDRVPEQFLREI--RDEDKEILGKLLNVLIRKCCRNGLWNVALE 218

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
              R+K    +P    YN ++         + A  +  +M   GF    D YT    +  
Sbjct: 219 ELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFN--MDGYTLGCFVHL 276

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF---------------------VPDVVA 289
            CK G        I +  ++ + +    +  G                      +P+VV 
Sbjct: 277 LCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVT 336

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  L+ GC +  ++ R   +   M  +GC P+R  +NS I  Y    +   A ++++KM 
Sbjct: 337 YRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMG 396

Query: 350 NL------------------NHGVPT-------SSSYTPIIHA---------------LC 369
           +                   N  +P+         +Y  ++ A               LC
Sbjct: 397 DCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLC 456

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYK----LVCDA 402
            AG+  +A   + E++  G +P   TY     L+C+A
Sbjct: 457 GAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNA 493


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 32/259 (12%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G +   S+ + +I  L +   V +A + F  MK+    P VY Y ++I++ C+ G   
Sbjct: 453 GKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQ 512

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +AR   ++M   G  C P+V TYT LI +Y K            +++  A+ LF +ML +
Sbjct: 513 QARKWFDEMLHKG--CTPNVVTYTALIHAYLK-----------AKQMPVADELFEMMLLE 559

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELF---------DDMNK------KGCI-PNRVTY 325
           G  P+VV Y  LIDG CK  +IE+A +++          DM+K        C  PN +TY
Sbjct: 560 GCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITY 619

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            + +      N + +A E++  M  L HG  P    Y  +I   C+ G++ +A++   ++
Sbjct: 620 GALVDGLCKANRVKEAHELLDTM--LAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKM 677

Query: 385 VDGGSVPREYTYKLVCDAL 403
            + G  P  YTY    D L
Sbjct: 678 SERGYSPNLYTYSSFIDCL 696



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 115/255 (45%), Gaps = 28/255 (10%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G ++   +V+   + L   G  ++A      M      PD   Y+ VI  LC      KA
Sbjct: 420 GVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKA 479

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L E+M+  G    P VYTYTILI S+CK G+           I +A   F  ML KG 
Sbjct: 480 FSLFEEMKRNGI--VPSVYTYTILIDSFCKAGL-----------IQQARKWFDEMLHKGC 526

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+VV Y  LI    K  ++  A ELF+ M  +GC PN VTY + I  +    +I+KA +
Sbjct: 527 TPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQ 586

Query: 344 MMRKMQN------------LNHG---VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +  +M+             L+H     P   +Y  ++  LC+A RV EA + L  ++  G
Sbjct: 587 IYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHG 646

Query: 389 SVPREYTYKLVCDAL 403
             P +  Y  V D  
Sbjct: 647 CEPNQIVYDAVIDGF 661



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 128/271 (47%), Gaps = 24/271 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSS-VTCLIKVLGEEGLVNEALATFYRMKQFR 199
           F +   ++   +    MS RG +  L T SS + CL K    +  ++  L    +M +  
Sbjct: 661 FCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFK----DNRLDLVLKVLSKMLENS 716

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C P+V  Y  +++ LC++G  ++A  L+ +ME  G  C P+V TYT +I  + K G    
Sbjct: 717 CTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKG--CNPNVVTYTAMIDGFGKSG---- 770

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  +I +   LFR M  KG  P+ + Y  LI+ CC    ++ A +L D+M +    
Sbjct: 771 -------KIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWP 823

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
            + +++   I  +S   E   +I ++ ++   N  VP  S Y  +I    +AGR+  A D
Sbjct: 824 KHILSHRKIIEGFS--QEFITSIGLLDELSE-NESVPVDSLYRILIDNYIKAGRLEVALD 880

Query: 380 FLAELVDGGS--VPREYTYKLVCDALNAAEE 408
            L E+    S  V  +Y Y  + + L+ A +
Sbjct: 881 LLEEISSSPSHAVSNKYLYASLIENLSHASK 911



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 26/241 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++  L E  L  EA+   +RM+   C P+V  Y ++++   R G   + + +L  M   G
Sbjct: 285 MVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEG 344

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+   +  LI +YCK            R    A  LF+ M+  G  P  + YN  I
Sbjct: 345 --CYPNREIFNSLIHAYCK-----------SRDYSYAYKLFKKMIKCGCQPGYLVYNIFI 391

Query: 295 DGCCKTYR---------IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
              C             +E+A   + +M   G + N+V  ++F R      + D+A +++
Sbjct: 392 GSVCSNEEQPSSDILDLVEKA---YSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKII 448

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
            +M      VP  S+Y+ +I  LC+A +V +A     E+   G VP  YTY ++ D+   
Sbjct: 449 CEMMGKGF-VPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCK 507

Query: 406 A 406
           A
Sbjct: 508 A 508



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 109/265 (41%), Gaps = 24/265 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L++     G  N AL    R+K F  +P    YN +I    R    + A   L + E+  
Sbjct: 182 LVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTA--YLVKREMLS 239

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           +    D YT +    S CK G    CR+A    I EA         + FVPD V YN ++
Sbjct: 240 YAFVMDRYTLSCFAYSLCKGG---KCREAF-DLIDEA---------EDFVPDTVFYNRMV 286

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C+    E A+++   M    CIPN VTY   +       ++ +   ++  M  +  G
Sbjct: 287 SGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMM--ITEG 344

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
             P    +  +IHA C++     A     +++  G  P    Y +   ++ + EE    D
Sbjct: 345 CYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSD 404

Query: 414 DGLRKRIRDGIEYRFRQVMKVKPIM 438
                 I D +E  + +++ +  ++
Sbjct: 405 ------ILDLVEKAYSEMLDLGVVL 423



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 12/154 (7%)

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L+  CC+      ALE    +   G  P++ TYN+ I+ +   +++D A  + R+M +
Sbjct: 180 NFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLS 239

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
               V    + +   ++LC+ G+  EA D + E  D   VP    Y  +   L    E S
Sbjct: 240 YAF-VMDRYTLSCFAYSLCKGGKCREAFDLIDEAED--FVPDTVFYNRMVSGLC---EAS 293

Query: 411 LLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELL 444
           L ++ +       I +R R    +  ++ ++ LL
Sbjct: 294 LFEEAM------DILHRMRSSSCIPNVVTYRILL 321


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 119/258 (46%), Gaps = 27/258 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L + G    AL    +M++   +  V  YN +I+ LC+ G+   A+ L  +M   G
Sbjct: 47  IINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKG 106

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------------------------RIWE 270
               PDV TY+ +I S+C+ G  T   + +R                         ++ E
Sbjct: 107 IF--PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSE 164

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  ++  ML +G  P  + YN +IDG CK  R+  A  + D M  K C P+ VT+++ I 
Sbjct: 165 AEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLIN 224

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            Y     +D  +E+  +M      V  + +YT +IH  C+ G +  A+D L  ++  G  
Sbjct: 225 GYCKAKRVDNGMEIFCEMHRRGI-VANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVA 283

Query: 391 PREYTYKLVCDALNAAEE 408
           P   T++ +  +L + +E
Sbjct: 284 PNYITFQSMLASLCSKKE 301



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 17/209 (8%)

Query: 142 FARGNNVKGLWDFLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F R          L+DM  R+ N ++VT S+   LI  L +EG V+EA   +  M +   
Sbjct: 121 FCRSGRWTDAEQLLRDMIERQINPDVVTFSA---LINALVKEGKVSEAEEIYGDMLRRGI 177

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P    YN +I+  C+    N A+ +L+ M      C PDV T++ LI+ YCK       
Sbjct: 178 FPTTITYNSMIDGFCKQDRLNDAKRMLDSM--ASKSCSPDVVTFSTLINGYCK------- 228

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                +R+     +F  M  +G V + V Y  LI G C+   ++ A +L + M   G  P
Sbjct: 229 ----AKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAP 284

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           N +T+ S +       E+ KA  ++  +Q
Sbjct: 285 NYITFQSMLASLCSKKELRKAFAILEDLQ 313



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 102/211 (48%), Gaps = 16/211 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I      G   +A      M + +  PDV  ++ +INAL + G  ++A  +   M   G
Sbjct: 117 MIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRG 176

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P   TY  +I  +CK           + R+ +A  +   M  K   PDVV ++ LI
Sbjct: 177 IF--PTTITYNSMIDGFCK-----------QDRLNDAKRMLDSMASKSCSPDVVTFSTLI 223

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G CK  R++  +E+F +M+++G + N VTY + I  +  V ++D A +++  M  ++ G
Sbjct: 224 NGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVM--ISSG 281

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           V P   ++  ++ +LC    + +A   L +L
Sbjct: 282 VAPNYITFQSMLASLCSKKELRKAFAILEDL 312



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 5/126 (3%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+  G  PDVV +  L++G C   R+ +AL L D M ++G  P    Y + I     + +
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            + A+ ++ KM+   H       Y  II  LC+ G  + A++   E+ D G  P   TY 
Sbjct: 57  TESALNLLSKMEE-THIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYS 115

Query: 398 LVCDAL 403
            + D+ 
Sbjct: 116 GMIDSF 121


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 121/252 (48%), Gaps = 35/252 (13%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +  +++M  +G   +  TS+ + +I +L     V+ A   F  MK     PDV+ Y ++I
Sbjct: 465 YSIIREMMSKGF--IPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILI 522

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           ++ C+VG   +AR   ++M   G  C P+V TYT LI +Y K            R++  A
Sbjct: 523 DSFCKVGLLQQARKWFDEMVRDG--CAPNVVTYTALIHAYLK-----------ARKMSSA 569

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
           N LF +ML +G +P+VV Y  LIDG CK+ +IE+A +++  M     IP+          
Sbjct: 570 NELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD---------- 619

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                     ++M  K+ + N   P   +Y  ++  LC+A +V EARD L  +   G  P
Sbjct: 620 ----------VDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEP 669

Query: 392 REYTYKLVCDAL 403
               Y  + D  
Sbjct: 670 NHIVYDALIDGF 681



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 14/200 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EA      M    C P+   Y+ +I+  C+VG  ++A+ +  +M   G+   P+VYTY
Sbjct: 652 VKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGY--GPNVYTY 709

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           + LI    K            +R+  A  +   ML     P+V+ Y  +IDG CK  + +
Sbjct: 710 SSLIDRLFK-----------DKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTD 758

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  L   M +KGC PN VTY + I  +    ++DK +E+MR+M       P   +Y  +
Sbjct: 759 EAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQM-GAKGCAPNFVTYRVL 817

Query: 365 IHALCEAGRVLEARDFLAEL 384
           I+  C AG + +A   L E+
Sbjct: 818 INHCCAAGLLDDAHQLLDEM 837



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 19/215 (8%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+++ Y  +++ LC+     +AR LL+ M + G  C P+   Y  LI  +CK G      
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEG--CEPNHIVYDALIDGFCKVG------ 685

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  +F  M  +G+ P+V  Y+ LID   K  R++ AL++   M +  C PN
Sbjct: 686 -----KLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPN 740

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN-HGVPTSSSYTPIIHALCEAGRVLEARDF 380
            + Y   I     V + D+A  +M  M+    H  P   +YT +I    +AG+V +  + 
Sbjct: 741 VIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCH--PNVVTYTAMIDGFGKAGKVDKCLEL 798

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415
           + ++   G  P   TY+++ +   AA    LLDD 
Sbjct: 799 MRQMGAKGCAPNFVTYRVLINHCCAA---GLLDDA 830



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 111/267 (41%), Gaps = 51/267 (19%)

Query: 142 FARGNNVKGLWDFLKDMSRRG--NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
             + + VK   D L  MS  G     +V  + +    KV    G ++EA   F +M +  
Sbjct: 646 LCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKV----GKLDEAQMVFTKMSERG 701

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             P+VY Y+ +I+ L +    + A  +L +M      C P+V  YT +I   CK G    
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS--CAPNVIIYTEMIDGLCKVG---- 755

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  +  EA  L  +M  KG  P+VV Y  +IDG  K  ++++ LEL   M  KGC 
Sbjct: 756 -------KTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCA 808

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL---------------------------- 351
           PN VTY   I +      +D A +++ +M+                              
Sbjct: 809 PNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLD 868

Query: 352 ----NHGVPTSSSYTPIIHALCEAGRV 374
               N  VP   +Y  +I + C+AGR+
Sbjct: 869 EIAENVAVPIIPAYRILIDSFCKAGRL 895



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 10/225 (4%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C P    +N +I+A CR G+++ A  LL++M   G  C P    Y ILI   C      G
Sbjct: 365 CYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG--CQPGYVVYNILIGGIC------G 416

Query: 260 CRKAIRRRIWE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
             K     + E A   +  ML    V + V  + L    C   + E+A  +  +M  KG 
Sbjct: 417 NEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGF 476

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           IP+  TY+  I      +++D A  +  +M++ NH VP   +YT +I + C+ G + +AR
Sbjct: 477 IPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS-NHVVPDVFTYTILIDSFCKVGLLQQAR 535

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
            +  E+V  G  P   TY  +  A   A + S  ++     + +G
Sbjct: 536 KWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 27/227 (11%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I  L + G  +EA      M++  C P+V  Y  +I+   + G  +K   L+ QM  
Sbjct: 745 TEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGA 804

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRK---AIRRRIWEANHLFRLMLFKGF------ 283
            G  C P+  TY +LI+  C  G+     +    +++  W  +      + +GF      
Sbjct: 805 KG--CAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFII 862

Query: 284 -------------VPDVVAYNCLIDGCCKTYRIERALELFDDMNK--KGCIPNRVTYNSF 328
                        VP + AY  LID  CK  R+E ALEL   M+        ++  Y+S 
Sbjct: 863 SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSL 922

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
           I   S+ +++DKA E+   M     G+P  S +  ++  L    R L
Sbjct: 923 IESLSLASKVDKAFELYADMIK-RGGIPELSIFFYLVKGLIRINRTL 968



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 163/421 (38%), Gaps = 92/421 (21%)

Query: 48  VADVLKSIP------RFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAA 101
           V DVL  +       +FF  +    GRQ G+ H  P+   +L  E      N  V  P  
Sbjct: 132 VVDVLSLVKNPELGVKFFIWA----GRQIGYGHTGPVYHALL--EVLGCGGNDRV--PEQ 183

Query: 102 Y----RDPQKVTLG------LNKATEFYHW------VERFFDFFH--NEMTCKEMGIVFA 143
           +    RD  K  LG      + K      W      + R  D  +  + +T   +  VF 
Sbjct: 184 FLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFL 243

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
             + +   +   ++MS  G    +   ++ C + +L + G   EALA   + ++F+   D
Sbjct: 244 EADRLDTAYLVHREMSDSGFN--MDGYTLGCFVHLLCKAGRWREALALIEK-EEFKL--D 298

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              Y  +I+ LC    F +A   L +M      C P+V TY IL+          GC + 
Sbjct: 299 TVIYTQMISGLCEASLFEEAMDFLSRMRSSS--CIPNVVTYRILL---------CGCLR- 346

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
            +R++     +  +M+ +G  P    +N LI   C++     A +L   M   GC P  V
Sbjct: 347 -KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYV 405

Query: 324 TYNSFI--------------------------RYYSVVNEI---------------DKAI 342
            YN  I                            + V+N++               +KA 
Sbjct: 406 VYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAY 465

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            ++R+M +    +P +S+Y+ +I  LC A +V  A     E+     VP  +TY ++ D+
Sbjct: 466 SIIREMMSKGF-IPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDS 524

Query: 403 L 403
            
Sbjct: 525 F 525



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 148/397 (37%), Gaps = 79/397 (19%)

Query: 71  GFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFH 130
           GF H+T   Q+ L++    +   ++V   +  ++P+   LG+    +F+ W  R   + H
Sbjct: 111 GFGHKT---QKFLRQFREKLNETLVVDVLSLVKNPE---LGV----KFFIWAGRQIGYGH 160

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
                  +  V   G N +    FL+++  R   + +    +  LI+     GL N AL 
Sbjct: 161 TGPVYHALLEVLGCGGNDRVPEQFLREI--RDEDKEILGKLLNVLIRKCCRNGLWNVALE 218

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
              R+K    +P    YN ++         + A  +  +M   GF    D YT    +  
Sbjct: 219 ELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFN--MDGYTLGCFVHL 276

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF---------------------VPDVVA 289
            CK G        I +  ++ + +    +  G                      +P+VV 
Sbjct: 277 LCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVT 336

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  L+ GC +  ++ R   +   M  +GC P+R  +NS I  Y    +   A ++++KM 
Sbjct: 337 YRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMG 396

Query: 350 NL------------------NHGVPT-------SSSYTPIIHA---------------LC 369
           +                   N  +P+         +Y  ++ A               LC
Sbjct: 397 DCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLC 456

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYK----LVCDA 402
            AG+  +A   + E++  G +P   TY     L+C+A
Sbjct: 457 GAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNA 493


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 14/231 (6%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M  +   P++  YN +I+  C     +    L+E+M   G  C PD+ TY  LI   CK 
Sbjct: 1   MTIWGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATG--CLPDINTYNTLIDGLCKT 58

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           R+ E N LF  M  K   PDV+ Y+CLI G CK  RI  A  LFDDM 
Sbjct: 59  G-----------RVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDML 107

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           K+  +P+ VT+ + +  Y     +D A  ++ ++   +   P   +YT ++   C+  R+
Sbjct: 108 KQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCS-PDVYTYTSLVDGFCKVKRM 166

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           +EA   L  +  G   P    Y  + DA  +A +P++    L + + +G++
Sbjct: 167 VEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQ 217



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 13/224 (5%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           +CLI    +   +N A   F  M +    PDV  +  ++   C  G  + A  LLE  E+
Sbjct: 84  SCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLE--EI 141

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
               C PDVYTYT L+  +CK            +R+ EA+ + + M      P+VV Y  
Sbjct: 142 VASDCSPDVYTYTSLVDGFCKV-----------KRMVEAHRVLKRMAKGECQPNVVIYTA 190

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LID  C   +   A +L ++M   G  PN +TY S I  +    ++++A +M+ +++   
Sbjct: 191 LIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLERNE 250

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +      +Y  ++  LC  GR+  A + L  +   G+ PR   Y
Sbjct: 251 NCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIY 294



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 42/228 (18%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           GLV++A      +    C PDVY Y  +++  C+V    +A  +L++M      C P+V 
Sbjct: 129 GLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRM--AKGECQPNVV 186

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIW---EANHLFRLMLFKGFV--------------- 284
            YT LI ++C  G  T   K +   +    + N +    L  GF                
Sbjct: 187 IYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERL 246

Query: 285 -------PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
                   D+ AY  ++DG C+T R+  ALEL + + + G  P    Y + IR       
Sbjct: 247 ERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIR------- 299

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
               + + RK      G P +  Y  +I  L   GR  +A     EL+
Sbjct: 300 --GEMTLSRK------GRPNAKVYEAVIQELAREGRHEKANALSDELL 339


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 15/232 (6%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           V   + T L+K L  +   ++A+     RM Q  C P+V++YN+++  LC      +A  
Sbjct: 124 VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALE 183

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           LL+ M   G  CPPDV +YT +I+ + K G            + +A   +  ML +G +P
Sbjct: 184 LLQMMPDDGGDCPPDVVSYTTVINGFFKEG-----------DLDKAYGTYHEMLDRGILP 232

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           +VV Y+ +I   CK   +++A+E+   M K G +PN  TYNS +  Y    +  +AI  +
Sbjct: 233 NVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292

Query: 346 RKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +KM   + GV P   +Y  ++  LC+ GR  EAR     +   G  P   TY
Sbjct: 293 KKMH--SDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 137/279 (49%), Gaps = 23/279 (8%)

Query: 141 VFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
            +A+   V         M ++G N + VT  +V   I +L + G V +A+  F +M   R
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV---IGILCKSGRVEDAMRYFEQMIDER 439

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             P    YN +I++LC    ++KA+ L+ +M   G  C   ++ +  +I S+CK G    
Sbjct: 440 LSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI-CLDTIF-FNSIIDSHCKEG---- 493

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  R+ E+  LF LM+  G  PD++ Y+ LIDG C   +++ A +L   M   G  
Sbjct: 494 -------RVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK 546

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+ VTYN+ I  Y  ++ ++ A+ + R+M+  + GV P   +Y  I+  L +  R   A+
Sbjct: 547 PDCVTYNTLINGYCKISRMEDALVLFREME--SSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           +    + + G+     TY ++   L+   + +L D+ LR
Sbjct: 605 ELYVGITESGTQLELSTYNII---LHGLCKNNLTDEALR 640



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 105/223 (47%), Gaps = 14/223 (6%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG V E+   F  M +   +PD+  Y+ +I+  C  G  ++A  LL  M   G +  PD
Sbjct: 491 KEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMK--PD 548

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
             TY  LI+ YCK             R+ +A  LFR M   G  PD++ YN ++ G  +T
Sbjct: 549 CVTYNTLINGYCKI-----------SRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R   A EL+  + + G      TYN  +      N  D+A+ M + +   +  + T  +
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLET-RT 656

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  +I AL + GR  EA+D  A L   G VP   TY L+ + L
Sbjct: 657 FNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 135/317 (42%), Gaps = 34/317 (10%)

Query: 112 LNKATEFYH-WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           L+KA   YH  ++R      N +T   +     +   +    + L  M +  NG +    
Sbjct: 215 LDKAYGTYHEMLDR--GILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK--NGVMPNCR 270

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +   ++      G   EA+    +M      PDV  YN +++ LC+ G   +AR + + M
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG------------MQTG------------CRKAIRR 266
              G +  P++ TY  L+  Y   G            ++ G            C  A + 
Sbjct: 331 TKRGLK--PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++ +A  +F  M  +G  PD V Y  +I   CK+ R+E A+  F+ M  +   P  + YN
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYN 448

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELV 385
           S I    + ++ DKA E++ +M  L+ G+   +  +  II + C+ GRV+E+      +V
Sbjct: 449 SLIHSLCIFDKWDKAKELILEM--LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 386 DGGSVPREYTYKLVCDA 402
             G  P   TY  + D 
Sbjct: 507 RIGVKPDIITYSTLIDG 523



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 201 RPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           R D  A+  ++  LC     + A   +L +M   G  C P+V++Y IL+   C       
Sbjct: 123 RVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLG--CIPNVFSYNILLKGLCD------ 174

Query: 260 CRKAIRRRIWEANHLFRLMLFKG--FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                  R  EA  L ++M   G    PDVV+Y  +I+G  K   +++A   + +M  +G
Sbjct: 175 -----ENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRG 229

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
            +PN VTY+S I        +DKA+E++  M   N  +P   +Y  I+H  C +G+  EA
Sbjct: 230 ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK-NGVMPNCRTYNSIVHGYCSSGQPKEA 288

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
             FL ++   G  P   TY  + D L
Sbjct: 289 IGFLKKMHSDGVEPDVVTYNSLMDYL 314



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 17/227 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  Y ++I + C  G  +     L  +   GFR   D   +T L+   C         
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRV--DAIAFTPLLKGLC--------- 137

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG--CI 319
            A +R     + + R M   G +P+V +YN L+ G C   R + ALEL   M   G  C 
Sbjct: 138 -ADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCP 196

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+ V+Y + I  +    ++DKA     +M  L+ G+ P   +Y+ II ALC+A  + +A 
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEM--LDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           + L  +V  G +P   TY  +     ++ +P      L+K   DG+E
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVE 301



 Score = 42.4 bits (98), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 87/260 (33%), Gaps = 63/260 (24%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++EA      M     +PD   YN +IN  C++     A  L  +ME  G    PD+ 
Sbjct: 528 GKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGV--SPDII 585

Query: 243 T-----------------------------------YTILISSYCKYGM--------QTG 259
           T                                   Y I++   CK  +        Q  
Sbjct: 586 TYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 645

Query: 260 CRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           C   ++                 R  EA  LF  +   G VPDV  Y+ + +   +   +
Sbjct: 646 CLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLL 705

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           E   +LF  M + GC  N    NS +R      +I +A   +  +   +  +  S++   
Sbjct: 706 EELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTA--S 763

Query: 364 IIHALCEAGRVLEARDFLAE 383
           +   L   G+  E   FL E
Sbjct: 764 LFLDLLSGGKYQEYHRFLPE 783


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 147/313 (46%), Gaps = 39/313 (12%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F  GN ++     +  M   G    V     T +I  L + G V+ AL+ F +M+ +  R
Sbjct: 151 FCLGNRIEEAMSMVNQMVEMGIKPDVVI--YTTIIDSLCKNGHVDNALSLFNQMENYGIR 208

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  Y  ++N LC  G +  A  LL  M     +  PDV T+  LI ++ K G     +
Sbjct: 209 PDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIK--PDVITFNALIDAFVKEGKLLDAK 266

Query: 262 K------------------------AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
           +                         +  R+ EA  +F LM  KG  PDVVAY  LI+G 
Sbjct: 267 ELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGF 326

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           CK  ++E A+++F +M++KG   N +TY + I+ + +V + + A E+   M  ++ GVP 
Sbjct: 327 CKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHM--VSRGVPP 384

Query: 358 S-SSYTPIIHALCEAGRVLEA----RDFLAELVDGGSVPREYTYKLVCDAL--NAAEEPS 410
           +  +Y  ++H LC  G+V +A     D     +D G  P   TY ++   L  N   E +
Sbjct: 385 NIRTYNVLLHCLCYNGKVNKALMIFEDMQKREID-GVPPNIRTYNVLLHGLCYNGKLEKA 443

Query: 411 LLDDG-LRKRIRD 422
           L+  G ++KR  D
Sbjct: 444 LMVFGDMQKRDMD 456



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 112/245 (45%), Gaps = 14/245 (5%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA++   +M +   +PDV  Y  +I++LC+ G+ + A  L  QME  G R  PDV  Y
Sbjct: 157 IEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIR--PDVVMY 214

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T L++  C  G           R  +A+ L R M+ +   PDV+ +N LID   K  ++ 
Sbjct: 215 TSLVNGLCNSG-----------RWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLL 263

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A EL+++M +    PN  TY S I    +   +D+A +M   M+      P   +YT +
Sbjct: 264 DAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMET-KGCFPDVVAYTSL 322

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           I+  C+  +V +A     E+   G      TY  +        +P++  +     +  G+
Sbjct: 323 INGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGV 382

Query: 425 EYRFR 429
               R
Sbjct: 383 PPNIR 387



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 14/196 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD++ +  +IN  C      +A  ++ QM   G +  PDV  YT +I S CK G     
Sbjct: 138 EPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIK--PDVVIYTTIIDSLCKNG----- 190

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  +  A  LF  M   G  PDVV Y  L++G C + R   A  L   M K+   P
Sbjct: 191 ------HVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKP 244

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + +T+N+ I  +    ++  A E+  +M  ++   P   +YT +I+ LC  GR+ EAR  
Sbjct: 245 DVITFNALIDAFVKEGKLLDAKELYNEMIQMSIA-PNIFTYTSLINGLCMEGRLDEARQM 303

Query: 381 LAELVDGGSVPREYTY 396
              +   G  P    Y
Sbjct: 304 FYLMETKGCFPDVVAY 319



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 14/201 (6%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D+Y  N+++N  C+      A   L ++   GF   PD++T+T LI+ +C          
Sbjct: 105 DLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFE--PDIFTFTSLINGFC---------- 152

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
            +  RI EA  +   M+  G  PDVV Y  +ID  CK   ++ AL LF+ M   G  P+ 
Sbjct: 153 -LGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDV 211

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           V Y S +           A  ++R M       P   ++  +I A  + G++L+A++   
Sbjct: 212 VMYTSLVNGLCNSGRWRDADLLLRGMMK-RKIKPDVITFNALIDAFVKEGKLLDAKELYN 270

Query: 383 ELVDGGSVPREYTYKLVCDAL 403
           E++     P  +TY  + + L
Sbjct: 271 EMIQMSIAPNIFTYTSLINGL 291



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 20/192 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F +   V+       +MS++G  G  +T    T LI+  G  G  N A   F  M     
Sbjct: 326 FCKCKKVEDAMKIFYEMSQKGLTGNTIT---YTTLIQGFGLVGKPNVAQEVFGHMVSRGV 382

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQM---ELPGFRCPPDVYTYTILISSYCKYGMQ 257
            P++  YNV+++ LC  G  NKA  + E M   E+ G   PP++ TY +L+   C  G  
Sbjct: 383 PPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGV--PPNIRTYNVLLHGLCYNG-- 438

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    ++ +A  +F  M  +     ++ Y  +I G CK  +++ AL LF  +  KG
Sbjct: 439 ---------KLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKG 489

Query: 318 CIPNRVTYNSFI 329
             PN VTY + I
Sbjct: 490 VKPNVVTYTTMI 501



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 101/255 (39%), Gaps = 50/255 (19%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI  L  EG ++EA   FY M+   C PDV AY  +IN  C+      A  +  +M
Sbjct: 283 TYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEM 342

Query: 231 ELPGFR---------------------------------CPPDVYTYTILISSYCKYGMQ 257
              G                                    PP++ TY +L+   C  G  
Sbjct: 343 SQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNG-- 400

Query: 258 TGCRKAIRRRIWEANHLFRLML---FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                    ++ +A  +F  M      G  P++  YN L+ G C   ++E+AL +F DM 
Sbjct: 401 ---------KVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQ 451

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGR 373
           K+      +TY   I+      ++  A+ +   +   + GV P   +YT +I  L   G 
Sbjct: 452 KRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLP--SKGVKPNVVTYTTMISGLFREGL 509

Query: 374 VLEARDFLAELVDGG 388
           +LEA     ++ + G
Sbjct: 510 MLEAHVLFRKMKEDG 524


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 132/261 (50%), Gaps = 17/261 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  +  G   +L+ +  R N +L    + + ++  L ++G+V EAL  F  M     +PD
Sbjct: 188 KAGDTSGAILYLEKIKGR-NCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPD 246

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           + AYN +I+ LC  G + +A  LL  M   G    P+V T+ +L+ ++CK GM       
Sbjct: 247 LVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIM--PNVQTFNVLVDNFCKDGM------- 297

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               I  A  +   M+  G  PDVV YN +I G C   ++  A+++F+ M  KG +PN V
Sbjct: 298 ----ISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLV 353

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           TY+S I  +     I+KA+ ++ +M  +N G+ P   +++ +I   C+AG+   A++   
Sbjct: 354 TYSSLIHGWCKTKNINKALFLLGEM--VNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFC 411

Query: 383 ELVDGGSVPREYTYKLVCDAL 403
            + +    P   T  ++ D L
Sbjct: 412 TMHEHDQHPNLQTCAIILDGL 432



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 24/271 (8%)

Query: 143 ARGNNVKG--LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           A GN  +     D L+DM  + N     + +   +I  L + G  + A+    ++K   C
Sbjct: 153 AEGNVARAARFADSLEDMGHQSN-----SYTYGAIINGLCKAGDTSGAILYLEKIKGRNC 207

Query: 201 RPDVY-AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             DV  AY+ ++++LC+ G   +A  L   M   G +  PD+  Y  LI   C +G    
Sbjct: 208 DLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQ--PDLVAYNSLIHGLCNFG---- 261

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  R  EA  L   M+ KG +P+V  +N L+D  CK   I RA  +   M   G  
Sbjct: 262 -------RWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVE 314

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEAR 378
           P+ VTYNS I  + +++++  A+++   M  ++ G +P   +Y+ +IH  C+   + +A 
Sbjct: 315 PDVVTYNSVISGHCLLSQMGDAVKVFELM--IHKGFLPNLVTYSSLIHGWCKTKNINKAL 372

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
             L E+V+ G  P   T+  +      A +P
Sbjct: 373 FLLGEMVNSGLNPDVVTWSTLIGGFCKAGKP 403



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 17/242 (7%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           AL+ F++M      P    +  +   + ++ ++     L++ +   G +  PDVYT TI+
Sbjct: 55  ALSFFHKMVVMNPLPREKDFTKLFGIIVKMKHYATTISLIKHIYSLGIK--PDVYTLTII 112

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I+  C           +   ++  + +  +M   G  P VV +  LI+G C    + RA 
Sbjct: 113 INCLCH----------LNHTVFGFS-VLGVMFKIGVDPTVVTFATLINGLCAEGNVARAA 161

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
              D +   G   N  TY + I       +   AI  + K++  N  +    +Y+ I+ +
Sbjct: 162 RFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDS 221

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRIRDG 423
           LC+ G V EA +  + +   G  P    Y      +C+     E  +LL + +RK I   
Sbjct: 222 LCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPN 281

Query: 424 IE 425
           ++
Sbjct: 282 VQ 283



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 112/260 (43%), Gaps = 20/260 (7%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVN 186
           F  N +T   +   + +  N+      L +M   G N ++VT S+   LI    + G   
Sbjct: 348 FLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWST---LIGGFCKAGKPE 404

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
            A   F  M +    P++    ++++ L +    ++A  L  +ME        +V  Y I
Sbjct: 405 AAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREME--KMNLELNVVIYNI 462

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           ++   C +G           ++ +A  LF  +  KG   DVVAY  +I G CK   ++ A
Sbjct: 463 VLDGMCSFG-----------KLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDA 511

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
             L   M + GC+PN  TYN F+R      +I ++ + +  M+    G+   ++ T ++ 
Sbjct: 512 ENLLMKMEENGCLPNEFTYNVFVRGLLQRYDISRSTKYLLLMK--GKGLSADATTTELLI 569

Query: 367 ALCEAGRVLEARD-FLAELV 385
           +   A +   A   FL E V
Sbjct: 570 SYFSANKENSALHVFLQEFV 589


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 145/301 (48%), Gaps = 30/301 (9%)

Query: 87  AYNIANNVLVLGPAAYRDPQKVTLGL--------NKATEFYHWVERFFDFFHNEMTCKEM 138
           A +I   +L LG     +P +VT+G         N+ ++    V++  +  +        
Sbjct: 139 ALSILGKMLKLG----YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 194

Query: 139 GIV--FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196
            I+    +   V   +DF K++ R+G    V T   T L+  L      ++A      M 
Sbjct: 195 AIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT--YTALVNGLCNSSRWSDAARLLSDMI 252

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
           + +  P+V  Y+ +++A  + G   +A+ L E+M        PD+ TY+ L++  C    
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEM--VRMSIDPDIVTYSSLVNGLC---- 306

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                  +  RI EAN +F LM+ KG + DVV+YN LI+G CK  R+E  ++LF +M+++
Sbjct: 307 -------LHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           G + N VTYN+ I+ +    ++DKA E   +M       P   +Y  ++  LC+ G + +
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGIS-PDIWTYNILLGGLCDNGELEK 418

Query: 377 A 377
           A
Sbjct: 419 A 419



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 14/210 (6%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M+    R D+Y +N+VIN  C     + A  +L +M   G+   PD  T   L++ +C+
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYE--PDRVTIGSLVNGFCR 167

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                      R R+ +A  L   M+  G+ PD+VAYN +ID  CKT R+  A + F ++
Sbjct: 168 -----------RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI 216

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            +KG  PN VTY + +      +    A  ++  M       P   +Y+ ++ A  + G+
Sbjct: 217 ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGK 275

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           VLEA++   E+V     P   TY  + + L
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVTYSSLVNGL 305



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 119/294 (40%), Gaps = 38/294 (12%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L DM ++     V T S   L+    + G V EA   F  M +    PD+  Y+ ++N 
Sbjct: 247 LLSDMIKKKITPNVITYSA--LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNG 304

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------- 266
           LC     ++A  + + M   G  C  DV +Y  LI+ +CK        K  R        
Sbjct: 305 LCLHDRIDEANQMFDLMVSKG--CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLV 362

Query: 267 -----------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
                             + +A   F  M F G  PD+  YN L+ G C    +E+AL +
Sbjct: 363 SNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVI 422

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
           F+DM K+    + VTY + IR      ++++A  +   + +L    P   +YT ++  LC
Sbjct: 423 FEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL-SLKGLKPDIVTYTTMMSGLC 481

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTY---------KLVCDALNAAEEPSLLDD 414
             G + E      ++   G +  + T          +L+   L+    PSLL D
Sbjct: 482 TKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKD 535



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 109/219 (49%), Gaps = 16/219 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +N+A+  F  M + R  P +  +N +++A+ ++  ++    L ++ME+ G R   D+YT+
Sbjct: 66  LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIR--NDLYTF 123

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            I+I+ +C       C +     +  A  +   ML  G+ PD V    L++G C+  R+ 
Sbjct: 124 NIVINCFC------CCFQ-----VSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 172

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A+ L D M + G  P+ V YN+ I        ++ A +  ++++    G+ P   +YT 
Sbjct: 173 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER--KGIRPNVVTYTA 230

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +++ LC + R  +A   L++++     P   TY  + DA
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDA 269


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 124/250 (49%), Gaps = 14/250 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++  L + G ++ AL+   +M++ +   +V  YN +I+ LC+  + + A  L  +ME  G
Sbjct: 227 VVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG 286

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PDV+TY  LIS  C YG           R  +A+ L   M+ +   P+VV +N LI
Sbjct: 287 IK--PDVFTYNSLISCLCNYG-----------RWSDASRLLSDMIERKINPNVVTFNSLI 333

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D   K  ++  A +LFD+M ++   PN VTYNS I  + + + +D+A ++   M +    
Sbjct: 334 DAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS-KDC 392

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
           +P   +Y  +I   C+A RV E  +   E+   G V    TY  +   L  A +  +   
Sbjct: 393 LPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 452

Query: 415 GLRKRIRDGI 424
             +K + DG+
Sbjct: 453 IFKKMVSDGV 462



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 121/247 (48%), Gaps = 29/247 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A   F +M+    +PDV+ YN +I+ LC  G ++ A  LL  M     +  P+V T+
Sbjct: 272 MDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDM--IERKINPNVVTF 329

Query: 245 TILISSYCKYGMQTGCRK------------------------AIRRRIWEANHLFRLMLF 280
             LI ++ K G      K                         +  R+ EA  +F LM+ 
Sbjct: 330 NSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 389

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           K  +PDVV YN LI G CK  R+E  +ELF +M+++G + N VTYN+ I+      + D 
Sbjct: 390 KDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 449

Query: 341 AIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A ++ +KM  ++ GVP    +Y+ ++  LC+ G++ +A      L      P  YTY ++
Sbjct: 450 AQKIFKKM--VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIM 507

Query: 400 CDALNAA 406
            + +  A
Sbjct: 508 IEGMCKA 514



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 22/230 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F +   V+   +  ++MS+RG  G  VT ++   LI+ L + G  + A   F +M     
Sbjct: 406 FCKAKRVEEGMELFREMSQRGLVGNTVTYNT---LIQGLFQAGDCDMAQKIFKKMVSDGV 462

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD+  Y+++++ LC+ G   KA  + E ++    +  P++YTY I+I   CK G     
Sbjct: 463 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKS--KMEPNIYTYNIMIEGMCKAG----- 515

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ +   LF  +  KG  P+V+ Y  +I G C+    E A  LF +M + G +P
Sbjct: 516 ------KVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLP 569

Query: 321 NRVTYNSFIRYYSVVNEIDKA--IEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           +   YN+ IR  + + + DKA   E++++M++    V  +S+ + +I+ L
Sbjct: 570 DSGCYNTLIR--ARLRDGDKAASAELIKEMRSCGF-VGDASTISMVINML 616



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 106/230 (46%), Gaps = 14/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK   +   V E +  F  M Q     +   YN +I  L + G+ + A+ + ++M   G
Sbjct: 402 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 461

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
              PPD+ TY+IL+   CKYG           ++ +A  +F  +      P++  YN +I
Sbjct: 462 V--PPDIITYSILLDGLCKYG-----------KLEKALVVFEYLQKSKMEPNIYTYNIMI 508

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G CK  ++E   +LF  ++ KG  PN + Y + I  +      ++A  + R+M+  +  
Sbjct: 509 EGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE-DGT 567

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           +P S  Y  +I A    G    + + + E+   G V    T  +V + L+
Sbjct: 568 LPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLH 617



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 132/305 (43%), Gaps = 48/305 (15%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R  + K  +D+ + +SR G  EL                  +++A+A F  M + R  P 
Sbjct: 38  RAFSGKTSYDYREKLSRNGLSELK-----------------LDDAVALFGEMVKSRPFPS 80

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-------- 255
           +  ++ +++A+ ++  F+    L EQM+  G   P + YTY+IL++ +C+          
Sbjct: 81  IIEFSKLLSAIAKMNKFDVVISLGEQMQNLGI--PHNHYTYSILLNCFCRRSQLPLALAV 138

Query: 256 ----MQTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
               M+ G    I             +RI EA  L   M+  G+ PD V +N LI G   
Sbjct: 139 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFL 198

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             +   A+ L D M  +GC P+  TY + +       +ID A+ +++KM+          
Sbjct: 199 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEANVV 257

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDG 415
            Y  II  LC+   + +A D   ++   G  P  +TY      +C+    ++   LL D 
Sbjct: 258 IYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDM 317

Query: 416 LRKRI 420
           + ++I
Sbjct: 318 IERKI 322


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 106/199 (53%), Gaps = 16/199 (8%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           E    F  M +    PDV  YN +++    V   N A+ +   M   G    PD+ +Y I
Sbjct: 165 EGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVN--PDIRSYNI 222

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI+ +CK            +++ +A +LF  M  K  +P+VV YN LIDG  K+ RI  A
Sbjct: 223 LINGFCKI-----------KKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYA 271

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
           L+L D M+ +G  PN +TYNS I      +++DKAI ++ K +  + G+ P+  +YT +I
Sbjct: 272 LQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFK--DQGIQPSMYTYTILI 329

Query: 366 HALCEAGRVLEARDFLAEL 384
             LC+ GR+ +AR+   +L
Sbjct: 330 DGLCKGGRLKDARNIFEDL 348



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 133/285 (46%), Gaps = 53/285 (18%)

Query: 157 DMSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           D+ +R +G+LV  ++V    +I  + ++  VN+A   +  M      P+V  Y+ +I+  
Sbjct: 63  DLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 122

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
             VG    A  L  ++ L   +  PD YT+ IL+  +CK            R++ E   +
Sbjct: 123 FVVGKLKDAIDLFNKIILENIK--PDGYTFNILVDGFCK-----------DRKMKEGKTV 169

Query: 275 FRLMLFKGFVPDVVAYNCLID-----------------------------------GCCK 299
           F +M+ +G +PDVV YN L+D                                   G CK
Sbjct: 170 FAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCK 229

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             ++++A+ LF++M+ K  IPN VTYNS I   S    I  A++++ +M   + GVP + 
Sbjct: 230 IKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMH--DRGVPPNI 287

Query: 360 -SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +Y  II AL +  +V +A   + +  D G  P  YTY ++ D L
Sbjct: 288 LTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGL 332



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 16/241 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L + G    AL    R+     + +   YN VI  +C+  + N A  L  +M
Sbjct: 44  SYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEM 103

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P+V TY+ LIS +   G           ++ +A  LF  ++ +   PD   +
Sbjct: 104 VSKGI--SPNVVTYSALISGFFVVG-----------KLKDAIDLFNKIILENIKPDGYTF 150

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L+DG CK  +++    +F  M K+G IP+ VTYNS +  Y +V E++ A  +   M  
Sbjct: 151 NILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQ 210

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
              GV P   SY  +I+  C+  +V +A +   E+     +P   TY  + D L+ +   
Sbjct: 211 --GGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRI 268

Query: 410 S 410
           S
Sbjct: 269 S 269



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 18/210 (8%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+    N +I  LC  G  ++A    +++   GF    D  +Y  LI   CK G     
Sbjct: 4   HPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHL--DQVSYGTLIHGLCKVGETRAA 61

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
              ++R   +   L           + V YN +I G CK   +  A +L+ +M  KG  P
Sbjct: 62  LDLLQRVDGKLVQL-----------NAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISP 110

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRK--MQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VTY++ I  + VV ++  AI++  K  ++N+    P   ++  ++   C+  ++ E +
Sbjct: 111 NVVTYSALISGFFVVGKLKDAIDLFNKIILENIK---PDGYTFNILVDGFCKDRKMKEGK 167

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEE 408
              A ++  G +P   TY  + D     +E
Sbjct: 168 TVFAMMMKQGIIPDVVTYNSLVDGYRLVKE 197



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G+ P+ +  N LI G C   +I +A    D +   G   ++V+Y + I     V E   A
Sbjct: 2   GYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAA 61

Query: 342 IEMMR----KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +++++    K+  LN     +  Y  +I+ +C+   V +A D  +E+V  G  P   TY
Sbjct: 62  LDLLQRVDGKLVQLN-----AVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTY 115



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G ++ AL    +M      P++  YN +I+AL +    +KA  L+ + +  G
Sbjct: 258 LIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQG 317

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
            +  P +YTYTILI   CK     G R    R I+E
Sbjct: 318 IQ--PSMYTYTILIDGLCK-----GGRLKDARNIFE 346


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 113/251 (45%), Gaps = 16/251 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L++M  +G    V T   T +I    +EG +++AL     MK   C+P+V+ YN ++ 
Sbjct: 132 EMLQEMFEKGLAPCVVT--CTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQ 189

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             C  G  +KA  LL +M   G    PD  TY +LI   C           I   I  A 
Sbjct: 190 GFCNEGKVHKAMTLLNKMRACGVN--PDAVTYNLLIRGQC-----------IDGHIESAF 236

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L RLM   G + D   YN LI+  CK  R ++A  LFD +  +G  PN VT+NS I   
Sbjct: 237 RLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGL 296

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               + D A + + KM +     P + +Y+  I  LC+     E   F+ E++     P 
Sbjct: 297 CKSGKADIAWKFLEKMVSAG-CTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPS 355

Query: 393 EYTYKLVCDAL 403
              Y +V   L
Sbjct: 356 TVNYTIVIHKL 366



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 19/244 (7%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           GEEGL+        RMK+   RP   AY  V++  CR     +A  +L++M   G    P
Sbjct: 92  GEEGLL-----MLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGL--AP 144

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
            V T T +I++YCK G           R+ +A  +  LM  +G  P+V  YN L+ G C 
Sbjct: 145 CVVTCTAVINAYCKEG-----------RMSDALRVLELMKLRGCKPNVWTYNALVQGFCN 193

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             ++ +A+ L + M   G  P+ VTYN  IR   +   I+ A  ++R M+  +  +    
Sbjct: 194 EGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEG-DGLIADQY 252

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
           +Y  +I+ALC+ GR  +A      L   G  P   T+  + + L  + +  +    L K 
Sbjct: 253 TYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKM 312

Query: 420 IRDG 423
           +  G
Sbjct: 313 VSAG 316



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 109/240 (45%), Gaps = 20/240 (8%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EA      M +    P V     VINA C+ G  + A  +LE M+L G  C P+V+TY  
Sbjct: 129 EAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG--CKPNVWTYNA 186

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           L+  +C  G           ++ +A  L   M   G  PD V YN LI G C    IE A
Sbjct: 187 LVQGFCNEG-----------KVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESA 235

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
             L   M   G I ++ TYN+ I         D+A  +   ++    G+ P + ++  +I
Sbjct: 236 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLE--TRGIKPNAVTFNSLI 293

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRIR 421
           + LC++G+   A  FL ++V  G  P  YTY    + +C    + E  S + + L+K ++
Sbjct: 294 NGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVK 353



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 104/259 (40%), Gaps = 60/259 (23%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----- 255
           RPD Y +N +I   CR    + AR L ++M L GF    DV +Y  LI   C+ G     
Sbjct: 7   RPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGF--AQDVVSYATLIEGLCEAGRIDEA 64

Query: 256 --------------------------------------MQTGCRKAIR------------ 265
                                                  + G R + R            
Sbjct: 65  VELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRE 124

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           R+  EA  + + M  KG  P VV    +I+  CK  R+  AL + + M  +GC PN  TY
Sbjct: 125 RKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTY 184

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           N+ ++ +    ++ KA+ ++ KM+    GV P + +Y  +I   C  G +  A   L  +
Sbjct: 185 NALVQGFCNEGKVHKAMTLLNKMRAC--GVNPDAVTYNLLIRGQCIDGHIESAFRLLRLM 242

Query: 385 VDGGSVPREYTYKLVCDAL 403
              G +  +YTY  + +AL
Sbjct: 243 EGDGLIADQYTYNALINAL 261



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 103/232 (44%), Gaps = 27/232 (11%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
            G+G +    +   LI  L ++G  ++A + F  ++    +P+   +N +IN LC+ G  
Sbjct: 243 EGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKA 302

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKY-GMQTGCR------------------ 261
           + A   LE+M   G  C PD YTY+  I   CK  G Q G                    
Sbjct: 303 DIAWKFLEKMVSAG--CTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYT 360

Query: 262 KAIRRRIWEANH-----LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
             I + + E N+      +  M+  G  PDVV Y   +   C   R+  A  +  +M+K 
Sbjct: 361 IVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKN 420

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           G   + + YN+ +  ++ + + D A+ ++++M ++   VP   +Y  ++  L
Sbjct: 421 GVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSV-ASVPNQFTYFILLRHL 471



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 21/184 (11%)

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G+R  PD YT+  LI  YC+             ++  A  LF  M  +GF  DVV+Y  L
Sbjct: 5   GWR--PDAYTFNSLIVGYCR-----------TNQVDVARDLFDKMPLRGFAQDVVSYATL 51

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G C+  RI+ A+ELF +M++    P+   Y + ++        ++ + M+R+M+ L  
Sbjct: 52  IEGLCEAGRIDEAVELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGW 107

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
             P++ +Y  ++   C   +  EA + L E+ + G  P   T   V   +NA  +   + 
Sbjct: 108 R-PSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAV---INAYCKEGRMS 163

Query: 414 DGLR 417
           D LR
Sbjct: 164 DALR 167



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 121/309 (39%), Gaps = 75/309 (24%)

Query: 152 WDFLKDMSRRG-NGELVTTSS-VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
           W FL+ M   G   +  T SS +  L K+ G +    E L+    M Q   +P    Y +
Sbjct: 306 WKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQ----EGLSFIGEMLQKDVKPSTVNYTI 361

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           VI+ L +  N+        +M   G  C PDV TYT  + +YC           I  R+ 
Sbjct: 362 VIHKLLKERNYGLVARTWGEMVSSG--CNPDVVTYTTSMRAYC-----------IEGRLN 408

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA ++   M   G   D +AYN L+DG     + + A+ +   M     +PN+ TY   +
Sbjct: 409 EAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILL 468

Query: 330 RYYSVVNEID-----------KAIEM---------MRKMQNL-NHGVPTS---------- 358
           R+   +  ++           KAIE+         M+K + L N G  +S          
Sbjct: 469 RHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGR 528

Query: 359 --------------------SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK- 397
                                 YT ++   C++ R L+A   +  ++  G +P+  +Y+ 
Sbjct: 529 TEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQH 588

Query: 398 ----LVCDA 402
               L+C+ 
Sbjct: 589 LLSGLICEG 597



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+  G+ PD   +N LI G C+T +++ A +LFD M  +G   + V+Y + I        
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           ID+A+E+  +M       P    Y  ++  LC A R  E    L  + + G  P    Y 
Sbjct: 61  IDEAVELFGEMDQ-----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYA 115

Query: 398 LVCD 401
            V D
Sbjct: 116 AVVD 119



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 14/184 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + +    F  MK+    P+   Y+ ++      G   +A  L+  M+        D+YT 
Sbjct: 494 LTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYT- 552

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L++ +CK            +R  +A  L   M+  GF+P +++Y  L+ G     + +
Sbjct: 553 -ALVTCFCK-----------SKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTD 600

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +A E+F +   K   P+ + +   I         D + EM+  ++ +N   P+  +Y  +
Sbjct: 601 KAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMN-CRPSHQTYAML 659

Query: 365 IHAL 368
              L
Sbjct: 660 TEEL 663



 Score = 42.7 bits (99), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 18/180 (10%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
            +V GL+D +K      N  L  + + + +++   E+G   EA +    MK+     +  
Sbjct: 495 TDVFGLFDVMKK-----NEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNED 549

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            Y  ++   C+   +  A  L+  M   GF   P + +Y  L+S     G QT       
Sbjct: 550 IYTALVTCFCKSKRYLDAWVLVCSMIQHGF--IPQLMSYQHLLSGLICEG-QTD------ 600

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
               +A  +F    +K + PD + +  +IDG  K    + + E+   + +  C P+  TY
Sbjct: 601 ----KAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTY 656


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 33/240 (13%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G +  TS+ + +I +L     V+ A   F  MK     PDV+ Y ++I++ C+VG   +A
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQA 534

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           R   ++M   G  C P+V TYT LI +Y K            R++  AN LF +ML +G 
Sbjct: 535 RKWFDEMVRDG--CAPNVVTYTALIHAYLK-----------ARKMSSANELFEMMLSEGC 581

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           +P+VV Y  LIDG CK+ +IE+A +++  M     IP+                    ++
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD--------------------VD 621

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           M  K+ + N   P   +Y  ++  LC+A +V EARD L  +   G  P    Y  + D  
Sbjct: 622 MYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGF 681



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 14/200 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EA      M    C P+   Y+ +I+  C+VG  ++A+ +  +M   G+   P+VYTY
Sbjct: 652 VKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGY--GPNVYTY 709

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           + LI    K            +R+  A  +   ML     P+V+ Y  +IDG CK  + +
Sbjct: 710 SSLIDRLFK-----------DKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTD 758

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  L   M +KGC PN VTY + I  +    ++DK +E+MR+M       P   +Y  +
Sbjct: 759 EAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQM-GAKGCAPNFVTYRVL 817

Query: 365 IHALCEAGRVLEARDFLAEL 384
           I+  C AG + +A   L E+
Sbjct: 818 INHCCAAGLLDDAHQLLDEM 837



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 19/215 (8%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+++ Y  +++ LC+     +AR LL+ M + G  C P+   Y  LI  +CK G      
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEG--CEPNHIVYDALIDGFCKVG------ 685

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  +F  M  +G+ P+V  Y+ LID   K  R++ AL++   M +  C PN
Sbjct: 686 -----KLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPN 740

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN-HGVPTSSSYTPIIHALCEAGRVLEARDF 380
            + Y   I     V + D+A  +M  M+    H  P   +YT +I    +AG+V +  + 
Sbjct: 741 VIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCH--PNVVTYTAMIDGFGKAGKVDKCLEL 798

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415
           + ++   G  P   TY+++ +   AA    LLDD 
Sbjct: 799 MRQMGAKGCAPNFVTYRVLINHCCAA---GLLDDA 830



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 115/277 (41%), Gaps = 51/277 (18%)

Query: 142 FARGNNVKGLWDFLKDMSRRG--NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
             + + VK   D L  MS  G     +V  + +    KV    G ++EA   F +M +  
Sbjct: 646 LCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKV----GKLDEAQMVFTKMSERG 701

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             P+VY Y+ +I+ L +    + A  +L +M      C P+V  YT +I   CK G    
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS--CAPNVIIYTEMIDGLCKVG---- 755

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  +  EA  L  +M  KG  P+VV Y  +IDG  K  ++++ LEL   M  KGC 
Sbjct: 756 -------KTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCA 808

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL---------------------------- 351
           PN VTY   I +      +D A +++ +M+                              
Sbjct: 809 PNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLD 868

Query: 352 ----NHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
               N  VP   +Y  +I + C+AGR+  A +   E+
Sbjct: 869 EIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEM 905



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 10/225 (4%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C P    +N +I+A CR G+++ A  LL++M   G  C P    Y ILI   C      G
Sbjct: 365 CYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG--CQPGYVVYNILIGGIC------G 416

Query: 260 CRKAIRRRIWE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
             K     + E A   +  ML    V + V  + L    C   + E+A  +  +M  KG 
Sbjct: 417 NEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGF 476

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           IP+  TY+  I      +++D A  +  +M++ NH VP   +YT +I + C+ G + +AR
Sbjct: 477 IPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS-NHVVPDVFTYTILIDSFCKVGLLQQAR 535

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
            +  E+V  G  P   TY  +  A   A + S  ++     + +G
Sbjct: 536 KWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 27/229 (11%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I  L + G  +EA      M++  C P+V  Y  +I+   + G  +K   L+ QM  
Sbjct: 745 TEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGA 804

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAI---RRRIWEANHLFRLMLFKGF------ 283
            G  C P+  TY +LI+  C  G+     + +   ++  W  +      + +GF      
Sbjct: 805 KG--CAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFII 862

Query: 284 -------------VPDVVAYNCLIDGCCKTYRIERALELFDDMNK--KGCIPNRVTYNSF 328
                        VP + AY  LID  CK  R+E ALEL  +M+        ++  Y+S 
Sbjct: 863 SLGLLDEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSL 922

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
           I   S+ +++DKA E+   M     G+P  S +  ++  L    R  EA
Sbjct: 923 IESLSLASKVDKAFELYADMIK-RGGIPELSIFFYLVKGLIRINRWEEA 970



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 163/421 (38%), Gaps = 92/421 (21%)

Query: 48  VADVLKSIP------RFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAA 101
           V DVL  +       +FF  +    GRQ G+ H  P+   +L  E      N  V  P  
Sbjct: 132 VVDVLSLVKNPELGVKFFIWA----GRQIGYGHTGPVYHALL--EVLGCGGNDRV--PEQ 183

Query: 102 Y----RDPQKVTLG------LNKATEFYHW------VERFFDFFH--NEMTCKEMGIVFA 143
           +    RD  K  LG      + K      W      + R  D  +  + +T   +  VF 
Sbjct: 184 FLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFL 243

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
             + +   +   ++MS  G    +   ++ C + +L + G   EALA   + ++F+   D
Sbjct: 244 EADRLDTAYLVHREMSDSGFN--MDGYTLGCFVHLLCKAGRWREALALIEK-EEFKL--D 298

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              Y  +I+ LC    F +A   L +M      C P+V TY IL+          GC + 
Sbjct: 299 TVIYTQMISGLCEASLFEEAMDFLSRMRSSS--CIPNVVTYRILL---------CGCLR- 346

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
            +R++     +  +M+ +G  P    +N LI   C++     A +L   M   GC P  V
Sbjct: 347 -KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYV 405

Query: 324 TYNSFI--------------------------RYYSVVNEI---------------DKAI 342
            YN  I                            + V+N++               +KA 
Sbjct: 406 VYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAY 465

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            ++R+M +    +P +S+Y+ +I  LC A +V  A     E+     VP  +TY ++ D+
Sbjct: 466 SIIREMMSKGF-IPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDS 524

Query: 403 L 403
            
Sbjct: 525 F 525



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 148/397 (37%), Gaps = 79/397 (19%)

Query: 71  GFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFH 130
           GF H+T   Q+ L++    +   ++V   +  ++P+   LG+    +F+ W  R   + H
Sbjct: 111 GFGHKT---QKFLRQFREKLNETLVVDVLSLVKNPE---LGV----KFFIWAGRQIGYGH 160

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
                  +  V   G N +    FL+++  R   + +    +  LI+     GL N AL 
Sbjct: 161 TGPVYHALLEVLGCGGNDRVPEQFLREI--RDEDKEILGKLLNVLIRKCCRNGLWNVALE 218

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
              R+K    +P    YN ++         + A  +  +M   GF    D YT    +  
Sbjct: 219 ELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFN--MDGYTLGCFVHL 276

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF---------------------VPDVVA 289
            CK G        I +  ++ + +    +  G                      +P+VV 
Sbjct: 277 LCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVT 336

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  L+ GC +  ++ R   +   M  +GC P+R  +NS I  Y    +   A ++++KM 
Sbjct: 337 YRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMG 396

Query: 350 NL------------------NHGVPT-------SSSYTPIIHA---------------LC 369
           +                   N  +P+         +Y  ++ A               LC
Sbjct: 397 DCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLC 456

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYK----LVCDA 402
            AG+  +A   + E++  G +P   TY     L+C+A
Sbjct: 457 GAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNA 493


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 137/290 (47%), Gaps = 53/290 (18%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-- 230
           T +I  L + G VN AL+ F +M+ +  RPDV  Y  ++N LC  G +  A  LL  M  
Sbjct: 181 TTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTK 240

Query: 231 -------------------------------ELPGFRCPPDVYTYTILISSYCKYGMQTG 259
                                          E+      P+++TYT LI+ +C      G
Sbjct: 241 RKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFC----MEG 296

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           C       + EA  +F LM  KG  PDVVAY  LI+G CK  +++ A+++F +M++KG  
Sbjct: 297 C-------VDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLT 349

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEAR 378
            N +TY + I+ +  V + + A E+   M  ++ GVP +  +Y  ++H LC  G+V +A 
Sbjct: 350 GNTITYTTLIQGFGQVGKPNVAQEVFSHM--VSRGVPPNIRTYNVLLHCLCYNGKVKKAL 407

Query: 379 DFLAELVD---GGSVPREYTYKLVCDAL--NAAEEPSLLD-DGLRKRIRD 422
               ++      G  P  +TY ++   L  N   E +L+  + +RKR  D
Sbjct: 408 MIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMD 457



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 133/301 (44%), Gaps = 18/301 (5%)

Query: 130 HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEA 188
           H+  TC  +   F + +       FL  M + G   ++VT +S   LI        + EA
Sbjct: 105 HDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTS---LINGFCLGNRMEEA 161

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           ++   +M +   +PDV  Y  +I++LC+ G+ N A  L +QME  G R  PDV  YT L+
Sbjct: 162 MSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIR--PDVVMYTSLV 219

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
           +  C  G           R  +A+ L R M  +   PDV+ +N LID   K  +   A E
Sbjct: 220 NGLCNSG-----------RWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEE 268

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           L+++M +    PN  TY S I  + +   +D+A +M   M+      P   +YT +I+  
Sbjct: 269 LYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET-KGCFPDVVAYTSLINGF 327

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRF 428
           C+  +V +A     E+   G      TY  +        +P++  +     +  G+    
Sbjct: 328 CKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNI 387

Query: 429 R 429
           R
Sbjct: 388 R 388



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 32/246 (13%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI     EG V+EA   FY M+   C PDV AY  +IN  C+    + A  +  +M
Sbjct: 284 TYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEM 343

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA--------NHLFR------ 276
              G     +  TYT LI  + + G     ++     +           N L        
Sbjct: 344 SQKGL--TGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNG 401

Query: 277 -----LMLFK--------GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
                LM+F+        G  P++  YN L+ G C   ++E+AL +F+DM K+      +
Sbjct: 402 KVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGII 461

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           TY   I+      ++  A+ +   +   + GV P   +YT +I  L   G   EA     
Sbjct: 462 TYTIIIQGMCKAGKVKNAVNLFCSLP--SKGVKPNVVTYTTMISGLFREGLKHEAHVLFR 519

Query: 383 ELVDGG 388
           ++ + G
Sbjct: 520 KMKEDG 525



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 7/145 (4%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G   D+   N L++  C++ +   A      M K G  P+ VT+ S I  + + N +++A
Sbjct: 102 GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEA 161

Query: 342 IEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL-- 398
           + M+ +M  +  G+ P    YT II +LC+ G V  A     ++ + G  P    Y    
Sbjct: 162 MSMVNQMVEM--GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLV 219

Query: 399 --VCDALNAAEEPSLLDDGLRKRIR 421
             +C++    +  SLL    +++I+
Sbjct: 220 NGLCNSGRWRDADSLLRGMTKRKIK 244


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 28/307 (9%)

Query: 125 FFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEE 182
            F   HN+ T   +     R +++      L  M + G    +   SVT   LI  L  E
Sbjct: 114 LFGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLG----IQPDSVTFTTLINGLCNE 169

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + EA+  F  M      P+   + ++++ LC+ G  ++AR + E M   G    P++Y
Sbjct: 170 GRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVE--PNIY 227

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY  L++ YC           +R  + +A+ +F +M+ KG  P V +Y+ LI+G CK+ R
Sbjct: 228 TYNALMNGYC-----------LRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRR 276

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           I+ A  L   M++K  IPN VTYN+ ++     + + +A E+ +KM + +  +P   +Y+
Sbjct: 277 IDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCS-SGMLPNLRTYS 335

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL------VCDALNAAEE--PSLLDD 414
            ++  LC+ G + EA   L  + +    P    Y +      +   L  A+E    L  +
Sbjct: 336 ILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFAN 395

Query: 415 GLRKRIR 421
           G+R  +R
Sbjct: 396 GIRPSVR 402



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 134/290 (46%), Gaps = 39/290 (13%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G   +  T + T L+ VL ++G+V+EA   F  M +    P++Y YN ++N  C     N
Sbjct: 184 GRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMN 243

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-------------------------- 255
            A  + E M   G  C P V++Y+ILI+ YCK                            
Sbjct: 244 DASKVFEIMVGKG--CAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNT 301

Query: 256 -MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
            MQ  C  +    + EA  LF+ M   G +P++  Y+ L+DG CK   +E AL+L   M 
Sbjct: 302 LMQGLCHAS---SLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQ 358

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGR 373
           ++   P+ V YN  I+   +  +++ A E+  K+    +G+ P+  +Y  +I  L + G 
Sbjct: 359 ERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKL--FANGIRPSVRTYNIMIKGLLKEGL 416

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS----LLDDGLRKR 419
             EA     ++ D G +P   +Y ++       ++PS    L+D+ + +R
Sbjct: 417 SDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRR 466



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 116/287 (40%), Gaps = 80/287 (27%)

Query: 185 VNEALATFYRMKQFRCRPDV-----------------------------------YAYNV 209
           +++A+A+FYRM     RP                                     Y  N+
Sbjct: 67  IDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNI 126

Query: 210 VINALCRVGNFNKARFLLEQM---------------------------------ELPGFR 236
           +IN+LCR+ + + A  +L +M                                 E+ G  
Sbjct: 127 LINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRD 186

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
             P+  T+TIL+   CK GM           + EA  +F  M  KG  P++  YN L++G
Sbjct: 187 AMPNTVTFTILVDVLCKKGM-----------VSEARCVFETMTEKGVEPNIYTYNALMNG 235

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            C    +  A ++F+ M  KGC P+  +Y+  I  Y     ID+A  ++ +M      +P
Sbjct: 236 YCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSE-KELIP 294

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            + +Y  ++  LC A  +LEA++   ++   G +P   TY ++ D L
Sbjct: 295 NTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGL 341


>gi|255660924|gb|ACU25631.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 484

 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 137/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 175 L-IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L I   G+EG+V E++  F +M++      + +Y+ +   + R G F  A+    +M   
Sbjct: 85  LMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSX 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDV+ YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVITYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  K   P  VTY + I+ Y  V+++D A+ ++ +M+   +
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMK--GY 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E+VD    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTD 290



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 25/214 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA   F  MK     P V  Y  +I     V   + A  L+E+M+  G+   P+  TY
Sbjct: 201 MEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMK--GYGIKPNAITY 258

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRI 303
           + L+   C              ++ EA  + + M+ K   P D   +  LI   CK   +
Sbjct: 259 STLLPGLCN-----------AEKMSEARSILKEMVDKYIAPTDNSIFMRLISSQCKAGNL 307

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM---------QNLNHG 354
           + A ++   M +         Y   I  Y    + D+A++++ K+         Q+  H 
Sbjct: 308 DAAADVLKSMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLIEKDIIVRPQSTLHM 367

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            P  S+Y PI+  LC  G+  +A   + +L+  G
Sbjct: 368 EP--SAYNPIVEYLCNNGQTSKAEALVRQLMKLG 399



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 32/227 (14%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK +  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI-----WEANHLFRLMLFKG 282
           ++M +  +  P D   +  LISS CK G        ++  I      EA H         
Sbjct: 279 KEM-VDKYIAPTDNSIFMRLISSQCKAGNLDAAADVLKSMIRLSVPTEAGH--------- 328

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI--PNRV------TYNSFIRYYSV 334
                  Y  LI+  CK  + ++A++L D + +K  I  P          YN  + Y   
Sbjct: 329 -------YGVLIENYCKAGQYDQAVKLLDKLIEKDIIVRPQSTLHMEPSAYNPIVEYLCN 381

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             +  KA  ++R++  L  GV   ++   +I    + G    A + L
Sbjct: 382 NGQTSKAEALVRQLMKL--GVQDPTALNTLIRGHSQEGSPDSAFELL 426


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 116/264 (43%), Gaps = 23/264 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L +MSRRG   +  T + T LI    + G +N AL     M      P+V   N +++ 
Sbjct: 410 LLHEMSRRG--LVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDG 467

Query: 214 LCRVGNFNKARFLLEQME---------LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           LC  G    A  + + M+          P     PDV TY ILI      G         
Sbjct: 468 LCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEG--------- 518

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             +  EA  L+  M  +G VPD + YN +IDG CK  R++ A ++FD M  KG  P+ VT
Sbjct: 519 --KFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVT 576

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           + + I  Y  V  +   +E+  +M      V  + +Y  +IH  C+ G +  A D   E+
Sbjct: 577 FTTLINGYCKVGRVGDGLEVFCEMGRRGI-VANAITYRTLIHGFCQVGNINGALDIFQEM 635

Query: 385 VDGGSVPREYTYKLVCDALNAAEE 408
           +  G  P   T + +   L + EE
Sbjct: 636 ISSGVYPDTITIRNMLTGLWSKEE 659



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 27/240 (11%)

Query: 148 VKGLW---------DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
           + GLW         +   +M  +G    + T +  C+I      G  +EA      M + 
Sbjct: 255 IDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYN--CMINGFCSSGRWSEAQRLLREMFER 312

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
           +  PDV  ++V+INAL + G F +A  L  +M   G    P+  TY  +I  + K     
Sbjct: 313 KMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGI--IPNTITYNSMIDGFSK----- 365

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                 + R+  A  +F LM  KG  PDV+ ++ LIDG C   R++  ++L  +M+++G 
Sbjct: 366 ------QNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGL 419

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
           + N +TY + I  +  +  ++ A++++++M  ++ GV P   +   ++  LC  G++ +A
Sbjct: 420 VANTITYTTLIHGFCQLGNLNAALDLLQEM--ISSGVCPNVVTCNTLLDGLCNNGKLKDA 477



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 109/269 (40%), Gaps = 29/269 (10%)

Query: 149 KGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
            G W      L++M  R     V T SV  LI  L +EG   EA   +  M      P+ 
Sbjct: 296 SGRWSEAQRLLREMFERKMSPDVVTFSV--LINALVKEGKFFEAEELYNEMLPRGIIPNT 353

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             YN +I+   +    + A  +   M   G  C PDV T++ILI  YC            
Sbjct: 354 ITYNSMIDGFSKQNRLDAAERMFYLMATKG--CSPDVITFSILIDGYCG----------- 400

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
            +R+ +   L   M  +G V + + Y  LI G C+   +  AL+L  +M   G  PN VT
Sbjct: 401 AKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVT 460

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQN----------LNHGVPTSSSYTPIIHALCEAGRV 374
            N+ +       ++  A+EM + MQ            N   P   +Y  +I  L   G+ 
Sbjct: 461 CNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKF 520

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDAL 403
            EA +   E+   G VP   TY  V D L
Sbjct: 521 SEAEELYEEMPHRGLVPDTITYNSVIDGL 549



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 130/285 (45%), Gaps = 32/285 (11%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV-----NEALATFYRMKQFRC 200
           + +KGL D +        G +V +  + C+I      G+V      + + + +R  + R 
Sbjct: 52  HEIKGLDDAIDLF-----GYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRR 106

Query: 201 RP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
            P ++Y++ ++I   C       A     ++   GF   P + T++ L+   C       
Sbjct: 107 IPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFH--PSLVTFSTLLHGLC------- 157

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
               +  R+ EA H F  +      P+V+A+  L++G C+  R+  A+ L D M + G  
Sbjct: 158 ----VEDRVSEALHFFHQIC----KPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQ 209

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN++TY + +     + +   A+ ++RKM+ ++   P    Y+ II  L + GR  +A++
Sbjct: 210 PNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQN 269

Query: 380 FLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRI 420
             +E+ + G  P  +TY  +    C +   +E   LL +   +++
Sbjct: 270 LFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKM 314


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 15/232 (6%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           V   + T L+K L  +   ++A+     RM Q  C P+V++YN+++  LC      +A  
Sbjct: 124 VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALE 183

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           LL+ M   G  CPPDV +YT +I+ + K G            + +A   +  ML +G +P
Sbjct: 184 LLQMMPDDGGDCPPDVVSYTTVINGFFKEG-----------DLDKAYGTYHEMLDRGILP 232

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           +VV Y+ +I   CK   +++A+E+   M K G +PN  TYNS +  Y    +  +AI  +
Sbjct: 233 NVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFL 292

Query: 346 RKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +KM   + GV P   +Y  ++  LC+ GR  EAR     +   G  P   TY
Sbjct: 293 KKMH--SDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY 342



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 113/270 (41%), Gaps = 53/270 (19%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S T +I    +EG +++A  T++ M      P+V  Y+ +I ALC+    +KA  +L  M
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P+  TY  ++  YC  G              EA    + M   G  PDVV Y
Sbjct: 261 VKNGVM--PNCRTYNSIVHGYCSSGQPK-----------EAIGFLKKMHSDGVEPDVVTY 307

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV---------------- 334
           N L+D  CK  R   A ++FD M K+G  P   TY + ++ Y+                 
Sbjct: 308 NSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR 367

Query: 335 -------------------VNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGR 373
                                ++D+A+ +  KM  Q LN   P + +Y  +I  LC++GR
Sbjct: 368 NGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN---PDTVTYGTVIGILCKSGR 424

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           V +A  +  +++D    P    Y  +  +L
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSL 454



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 17/227 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  Y ++I + C  G  +     L  +   GFR   D   +T L+   C         
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRV--DAIAFTPLLKGLC--------- 137

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG--CI 319
            A +R     + + R M   G +P+V +YN L+ G C   R + ALEL   M   G  C 
Sbjct: 138 -ADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCP 196

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+ V+Y + I  +    ++DKA     +M  L+ G+ P   +Y+ II ALC+A  + +A 
Sbjct: 197 PDVVSYTTVINGFFKEGDLDKAYGTYHEM--LDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           + L  +V  G +P   TY  +     ++ +P      L+K   DG+E
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVE 301



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 117/271 (43%), Gaps = 19/271 (7%)

Query: 112 LNKATEFYH-WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           L+KA   YH  ++R      N +T   +     +   +    + L  M +  NG +    
Sbjct: 215 LDKAYGTYHEMLDR--GILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVK--NGVMPNCR 270

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +   ++      G   EA+    +M      PDV  YN +++ LC+ G   +AR + + M
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +  P++ TY  L+  Y           A +  + E + L  LM+  G  P+   +
Sbjct: 331 TKRGLK--PEITTYGTLLQGY-----------ATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + LI    K  ++++A+ +F  M ++G  P+ VTY + I        ++ A+    +M +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
                P +  Y  +IH+LC   +  +A+D+ 
Sbjct: 438 -ERLSPGNIVYNSLIHSLCIFDKWDKAKDYF 467


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 116/238 (48%), Gaps = 19/238 (7%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
             G   EA+ T  +M+     P+V  Y+ ++N LC+ G   +AR + + M   G    PD
Sbjct: 256 SSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLE--PD 313

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           + TY  L+  +CK G           R+ E+  LF LM+  G  PD++ YN LIDGCC  
Sbjct: 314 IATYRTLLQGHCKEG-----------RVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLA 362

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSS 359
            +++ A +L   M   G  P+ VTY + I  Y  V+ +D A+ + ++M  ++ GV P   
Sbjct: 363 GKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEM--VSSGVSPNII 420

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           +Y  I+  L    R   A++    +   G+     TY ++   L+   + +L D+ LR
Sbjct: 421 TYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNII---LHGLCKNNLTDEALR 475



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 18/236 (7%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG V E+   F  M +   +PD+  YN +I+  C  G  ++A  LL  M   G +  PD
Sbjct: 326 KEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVK--PD 383

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           + TY  LI+ YC+             R+ +A  LF+ M+  G  P+++ YN ++ G   T
Sbjct: 384 IVTYGTLINGYCRVS-----------RMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 432

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R   A EL+  + K G      TYN  +      N  D+A+ M + +   +  + T  +
Sbjct: 433 RRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLET-RT 491

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL--LDD 414
           +  +I AL + GR+ EA+D  A     G VP   TY L+ +  N  E+ SL  LDD
Sbjct: 492 FNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAE--NLIEQGSLEELDD 545



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 8/239 (3%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           V   + T L+K L  +   ++A+     RM +  C PDV++YN ++  LC      +A  
Sbjct: 125 VDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALE 184

Query: 226 LLEQM-ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
           LL  M +  G   PPDV +Y  +++ + K G+QT   K   + + +A  +   M+  G +
Sbjct: 185 LLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQT---KLTAQAMDKAMEVLNTMVKNGVM 241

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           PD + YN ++ G C + + + A+     M   G  PN VTY+S + Y        +A ++
Sbjct: 242 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKI 301

Query: 345 MRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              M     G+ P  ++Y  ++   C+ GRV+E+      +V  G  P   TY  + D 
Sbjct: 302 FDSMT--KRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDG 358



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 27/224 (12%)

Query: 188 ALATFYRMKQF---RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           A++ + RM +    +  P V+ Y ++I   CR G  +     L  +   GFR   D  T+
Sbjct: 73  AVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRV--DAITF 130

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T L+   C     +     + RR+ E           G +PDV +YN L+ G C   R +
Sbjct: 131 TPLLKGLCADKRTSDAMDIVLRRMTEL----------GCIPDVFSYNNLLKGLCDENRSQ 180

Query: 305 RALELFD---DMNKKGCIPNRVTYNSF--------IRYYSVVNEIDKAIEMMRKMQNLNH 353
            ALEL     D    G  P+ V+YN+         I+       +DKA+E++  M   N 
Sbjct: 181 EALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVK-NG 239

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            +P   +Y  I+H  C +G+  EA   L ++   G  P   TY 
Sbjct: 240 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYS 283



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 22/201 (10%)

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           +  P V+TY ILI   C+ G           R+         ++ KGF  D + +  L+ 
Sbjct: 87  KVTPTVHTYAILIGCCCRAG-----------RLDLGFAALGNVVKKGFRVDAITFTPLLK 135

Query: 296 GCCKTYRIERALEL-FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           G C   R   A+++    M + GCIP+  +YN+ ++     N   +A+E++  M +   G
Sbjct: 136 GLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGG 195

Query: 355 V--PTSSSYTPIIHALCEAG--------RVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
              P   SY  +++   + G         + +A + L  +V  G +P   TY  +     
Sbjct: 196 GSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC 255

Query: 405 AAEEPSLLDDGLRKRIRDGIE 425
           ++ +P      L+K   DG+E
Sbjct: 256 SSGQPKEAIGTLKKMRSDGVE 276


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 123/256 (48%), Gaps = 20/256 (7%)

Query: 164  GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
            G  + T S   LI  L +E L++ A   F  MK+  C PD + YN++++A+ +       
Sbjct: 771  GVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDM 830

Query: 224  RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
              + ++M   G+       TY  +IS   K  M           ++EA  L+  ++ +GF
Sbjct: 831  LKVQKEMHCKGYEST--YVTYNTIISGLVKSKM-----------LYEAMDLYYKLMSEGF 877

Query: 284  VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
             P    Y  L+DG  K  +IE A +LFD+M   GC PNR  YN  +  Y +    +K  E
Sbjct: 878  SPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCE 937

Query: 344  MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            + + M  ++ G+ P   SYT +I ALC AGR+ ++  +  +L + G  P   TY L+   
Sbjct: 938  LFQNM--VDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHG 995

Query: 403  LNAA----EEPSLLDD 414
            L  +    E  SL +D
Sbjct: 996  LGRSGRLEEAVSLFND 1011



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 130/274 (47%), Gaps = 25/274 (9%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V  +    +  +  L+ M   G    V T++V  LI++L + G V++A   F++MK    
Sbjct: 260 VLGQAGRFEEAYKILQKMEDEGCKPDVVTNTV--LIQILCDAGRVSDAKDVFWKMKASDQ 317

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLE---QMELPGFRCPPDVYTYTILISSYCKYGMQ 257
           +PD   Y   I  L + G+   +R ++E    M+  G+    +V  YT ++ + C+ G  
Sbjct: 318 KPDRVTY---ITLLDKCGDNGDSRSVIEIWNAMKADGYN--DNVVAYTAVVDALCQVG-- 370

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    R+ EA+ +F  M  KG  P   +YN LI G  K  R+  ALELF+ MN  G
Sbjct: 371 ---------RVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHG 421

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             PN  TY  FI YY    E  KAI+    M++    VP   +   ++++L ++GR+  A
Sbjct: 422 PTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGI-VPDVVAGNAVLYSLAKSGRLGMA 480

Query: 378 RDFLAELVDGGSVPREYTYKLV---CDALNAAEE 408
           +    EL   G  P   TY ++   C   + A+E
Sbjct: 481 KRVFHELKSIGVCPDNITYTMMIKCCSKASNADE 514



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 104/222 (46%), Gaps = 14/222 (6%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            L+  L ++G + +A   F  M  + C+P+   YN+++N     GN  K   L + M   G
Sbjct: 887  LLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQG 946

Query: 235  FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                PD+ +YT+LI + C  G           R+ ++   FR +   G  PD++ YN LI
Sbjct: 947  IN--PDIKSYTVLIGALCTAG-----------RLNDSLSYFRQLTELGLEPDLITYNLLI 993

Query: 295  DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
             G  ++ R+E A+ LF+DM K G  PN  TYNS I Y     +  +A +M  ++   N  
Sbjct: 994  HGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLK-NGW 1052

Query: 355  VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             P   +Y  +I     +G    A     +++ GG  P   TY
Sbjct: 1053 KPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTY 1094



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 116/254 (45%), Gaps = 19/254 (7%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           +W+ +K      +G      + T ++  L + G V+EA   F +MKQ    P  Y+YN +
Sbjct: 343 IWNAMK-----ADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSL 397

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           I+   +    N A  L   M + G    P+ YTY + I+ Y K G      KAI+R    
Sbjct: 398 ISGFLKADRLNHALELFNHMNIHG--PTPNGYTYVLFINYYGKSGESL---KAIKR---- 448

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
               + LM  KG VPDVVA N ++    K+ R+  A  +F ++   G  P+ +TY   I+
Sbjct: 449 ----YELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIK 504

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
             S  +  D+A+++  +M      VP   +   +I  L +AGR  EA     EL +    
Sbjct: 505 CCSKASNADEAMKVFSEMIE-TRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLD 563

Query: 391 PREYTYKLVCDALN 404
           P + TY  +   L 
Sbjct: 564 PTDCTYNTLLAGLG 577



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 13/155 (8%)

Query: 171  SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
            S T LI  L   G +N++L+ F ++ +    PD+  YN++I+ L R G   +A  L   M
Sbjct: 953  SYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDM 1012

Query: 231  ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            E  G    P++YTY  LI    K G           +  EA  ++  +L  G+ P+V  Y
Sbjct: 1013 EKSGI--APNLYTYNSLILYLGKEG-----------KAAEAGKMYEELLKNGWKPNVFTY 1059

Query: 291  NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            N LI G   +   + A   +  M   GC PN  TY
Sbjct: 1060 NALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTY 1094



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 15/213 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +IK   +    +EA+  F  M + RC PDV A N +I+ L + G  N+A  +    EL
Sbjct: 500 TMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFH--EL 557

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
                 P   TY  L++   + G           ++ E  HL   M    + P+++ YN 
Sbjct: 558 KEMNLDPTDCTYNTLLAGLGREG-----------KVKEVMHLLEEMNSNSYPPNLITYNT 606

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           ++D  CK   +  AL +  +M  KGC+P+  +YN+ +      + + +A  +  +M+ + 
Sbjct: 607 VLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKKVL 666

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              P  ++   I+ +  + G + EA   L E +
Sbjct: 667 --APDYTTLCTILPSFVKNGLMNEALHTLKEYI 697



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 142/368 (38%), Gaps = 69/368 (18%)

Query: 84  KKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCK---EMGI 140
           ++E    A NV+ +  +A  DP +       A + +  V +     H   +C    E+  
Sbjct: 71  EREGRPGAQNVVHMLRSAAADPAE-------ALQLFKSVAQQPRIVHTTESCNYMLELMR 123

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
              R  ++  ++D ++    + N       +   + + LG EG +  A      MK+   
Sbjct: 124 AHGRVRDMAQVFDLMQRQIVKAN-----VGTFLTIFRSLGMEGGLRSAPVALPMMKEAGI 178

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
             + Y YN +I  L + G   +A  + + M   G    P V TY++L+ ++ K  ++T  
Sbjct: 179 VLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGI--VPSVRTYSVLMLAFGKRDVET-- 234

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  +W    L R M   G  P+V +Y   I    +  R E A ++   M  +GC P
Sbjct: 235 ------VVW----LLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKP 284

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH--------------GVPTSS------- 359
           + VT    I+       +  A ++  KM+  +               G    S       
Sbjct: 285 DVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIW 344

Query: 360 -------------SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK------LVC 400
                        +YT ++ ALC+ GRV EA D   ++   G  P++Y+Y       L  
Sbjct: 345 NAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKA 404

Query: 401 DALNAAEE 408
           D LN A E
Sbjct: 405 DRLNHALE 412



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 121/288 (42%), Gaps = 32/288 (11%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
            RGN    ++  LK+M+        T  +   L+  LG EG V E +     M      P
Sbjct: 545 GRGNEAWKIFHELKEMNLD-----PTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPP 599

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC-- 260
           ++  YN V++ LC+ G  N A  +L  M + G  C PD+ +Y   +    K    T    
Sbjct: 600 NLITYNTVLDCLCKNGEVNYALGMLYNMTMKG--CMPDLSSYNTALHGLVKEDRLTEAFR 657

Query: 261 -----RKAI----------------RRRIWEANHLFR-LMLFKGFVPDVVAYNCLIDGCC 298
                +K +                   + EA H  +  +L  G   D  +++ L++G  
Sbjct: 658 IFCQMKKVLAPDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGIL 717

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K   +E+++E  +++     + +    +  IR+     +  +A E+++K ++L   + T 
Sbjct: 718 KRAGMEKSIEFAENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKT- 776

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            SY  +I  L +   +  A    +E+   G  P E+TY L+ DA+  +
Sbjct: 777 GSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKS 824



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 20/180 (11%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +V  LI  L + G  NEA   F+ +K+    P    YN ++  L R G   +   LLE+M
Sbjct: 533 AVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEM 592

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL---MLFKGFVPDV 287
               +  PP++ TY  ++   CK G              E N+   +   M  KG +PD+
Sbjct: 593 NSNSY--PPNLITYNTVLDCLCKNG--------------EVNYALGMLYNMTMKGCMPDL 636

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
            +YN  + G  K  R+  A  +F  M KK   P+  T  + +  +     +++A+  +++
Sbjct: 637 SSYNTALHGLVKEDRLTEAFRIFCQM-KKVLAPDYTTLCTILPSFVKNGLMNEALHTLKE 695



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 34/254 (13%)

Query: 181 EEGLVNEALATFYRMKQFRCRP----DVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
           + GL+NEAL T   +K++  +P    D  +++ ++  + +     K+    E + L   R
Sbjct: 682 KNGLMNEALHT---LKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFAENIALS--R 736

Query: 237 CPPDVYTYTILISSYCK------------------YGMQTGCRKAI------RRRIWEAN 272
              D +  + LI   CK                    ++TG   A+         I  A 
Sbjct: 737 ILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAE 796

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            LF  M   G  PD   YN ++D   K+ RIE  L++  +M+ KG     VTYN+ I   
Sbjct: 797 GLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGL 856

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
                + +A+++  K+ +     PT  +Y P++  L + G++ +A D   E++D G  P 
Sbjct: 857 VKSKMLYEAMDLYYKLMSEGFS-PTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPN 915

Query: 393 EYTYKLVCDALNAA 406
              Y ++ +    A
Sbjct: 916 RAIYNILLNGYRLA 929


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 16/230 (6%)

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           I  L ++G + EA+  F  M++    PD + YN++IN LC+         L+++M+  GF
Sbjct: 98  INGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGF 157

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
              P V TYT LI  +C  G           R+  A  +   M  +G  P+ V Y  LI 
Sbjct: 158 S--PTVVTYTTLIHGFCTAG-----------RVDAAMDILDEMEHRGITPNTVTYTALIQ 204

Query: 296 GCCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           G C    +ERA+ +  +M  +G  C PN VTY   I         +  +E + +M  ++ 
Sbjct: 205 GLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMI-ISG 263

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P +++YT +IH LC+ G  LEA   L E+V  G       Y  + D L
Sbjct: 264 CFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGL 313



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 104/214 (48%), Gaps = 15/214 (7%)

Query: 192 FYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            YR K    +  DV +Y+  IN LC+ G   +A  +  +ME  G    PD +TY ILI+ 
Sbjct: 78  IYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKG--SAPDSFTYNILING 135

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            CK             ++     L   M  +GF P VV Y  LI G C   R++ A+++ 
Sbjct: 136 LCK-----------DAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDIL 184

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ-NLNHGVPTSSSYTPIIHALC 369
           D+M  +G  PN VTY + I+      E+++AI ++++M+   N   P   +YT +IH LC
Sbjct: 185 DEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLC 244

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + G      +FL E++  G  P   TY  +   L
Sbjct: 245 QKGLFEMGMEFLDEMIISGCFPNNATYTALIHGL 278



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 124/266 (46%), Gaps = 22/266 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMK--Q 197
           F     V    D L +M  RG    +T ++VT   LI+ L + G V  A+     MK   
Sbjct: 171 FCTAGRVDAAMDILDEMEHRG----ITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRG 226

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
             C P+V  Y  +I+ LC+ G F      L++M + G  C P+  TYT LI   C+ G  
Sbjct: 227 NECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISG--CFPNNATYTALIHGLCQKG-- 282

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                       EA  L   M+  G   DVV YN LIDG CK   ++ A E+   M +KG
Sbjct: 283 ---------SFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKG 333

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P+  TY S I+       +D+A+ +M++M+     VP S +YT +I+   +A R   A
Sbjct: 334 VAPDVFTYTSLIQGLCDAGLLDEALGLMQEMR-AKGIVPNSVTYTTLINGFTQADRTDHA 392

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
              + E+   G +P    YK++  +L
Sbjct: 393 LQLVNEMKSNGLMPAGDIYKILFKSL 418



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 112/256 (43%), Gaps = 18/256 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            + +M  RG    V T   T LI      G V+ A+     M+     P+   Y  +I  
Sbjct: 148 LMDEMQARGFSPTVVT--YTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQG 205

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC  G   +A  +L++M+L G  C P+V TYT LI   C+ G+            +E   
Sbjct: 206 LCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGL------------FEMGM 253

Query: 274 LF-RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            F   M+  G  P+   Y  LI G C+      A  L ++M   GC  + V YNS I   
Sbjct: 254 EFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGL 313

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
             + E+D A EM   M  +  GV P   +YT +I  LC+AG + EA   + E+   G VP
Sbjct: 314 CKMGELDFAREMQILM--VEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVP 371

Query: 392 REYTYKLVCDALNAAE 407
              TY  + +    A+
Sbjct: 372 NSVTYTTLINGFTQAD 387



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           RR I  +  ++R  L      DV++Y+  I+G CK  +I  A+E+F +M +KG  P+  T
Sbjct: 69  RRGIPSSLRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFT 128

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YN  I       +++  + +M +MQ      PT  +YT +IH  C AGRV  A D L E+
Sbjct: 129 YNILINGLCKDAQLEMGVSLMDEMQARGFS-PTVVTYTTLIHGFCTAGRVDAAMDILDEM 187

Query: 385 VDGGSVPREYTYKLVCDAL 403
              G  P   TY  +   L
Sbjct: 188 EHRGITPNTVTYTALIQGL 206


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 120/255 (47%), Gaps = 30/255 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G+++EA+  F  M+    RPDV  Y+ +I+A CR+G    A     QM   G
Sbjct: 445 LISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIG 504

Query: 235 FRCPPDVYTYTILISSYCKYG--------MQTGCRKAIRR-----------------RIW 269
               P+   Y  LI  +C +G        +     K I R                 R+ 
Sbjct: 505 LE--PNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVM 562

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A+ +F L++  G  P +V +N LIDG C   ++E+A  + D M   G  P+ VTYN+ +
Sbjct: 563 DAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLV 622

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             Y    +ID  + + R+M  L+  V PT+ +Y+ ++  L  AGR   A+    E++D G
Sbjct: 623 SGYCKSGKIDDGLILFREM--LHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSG 680

Query: 389 SVPREYTYKLVCDAL 403
           +     TYK++   L
Sbjct: 681 TAVDIDTYKILLKGL 695



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 12/208 (5%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
            +RM    C P+  +YN VI +LC      +A  ++++M   G RC PDV ++  +I  +
Sbjct: 215 LHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGF 274

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
            K G            + +A +L   M+ KG  PDVV YN ++D  CK   +++A  +  
Sbjct: 275 FKQG-----------EVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLR 323

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
            M  KG  P+ +TY + I  YS      ++ +M RKM +    +P   ++   + +LC+ 
Sbjct: 324 QMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGL-IPGIVTFNSFMSSLCKH 382

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLV 399
           GR  +A +    +   G +P   +Y ++
Sbjct: 383 GRSKDAEEIFQYMTTKGHMPDLVSYSIL 410



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 116/269 (43%), Gaps = 29/269 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D ++ M++ G        S   +I    ++G V++A      M Q    PDV  YN +++
Sbjct: 248 DMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVD 307

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------ 266
           ALC+    +KA  +L QM   G    PD  TYT +I  Y   G      K  R+      
Sbjct: 308 ALCKARAMDKAELVLRQMVDKGVE--PDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGL 365

Query: 267 ------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
                             R  +A  +F+ M  KG +PD+V+Y+ L+ G     R      
Sbjct: 366 IPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNN 425

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
           LF  M  KG + N   +N  I  ++    +D+A+ +  +MQ    GV P   +Y+ +I A
Sbjct: 426 LFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQ--GQGVRPDVVTYSTLISA 483

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTY 396
            C  GR+ +A +  ++++  G  P    Y
Sbjct: 484 FCRMGRLADAMEKFSQMISIGLEPNTVVY 512



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 114/261 (43%), Gaps = 15/261 (5%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCR 201
            G +  G W     M R+   + +    VT    +  L + G   +A   F  M      
Sbjct: 342 HGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHM 401

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+ +Y+++++     G F     L   M   G     + + + ILIS++ K GM     
Sbjct: 402 PDLVSYSILLHGYATEGRFADMNNLFHSMADKGI--VANCHCFNILISAHAKRGMMD--- 456

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                   EA  +F  M  +G  PDVV Y+ LI   C+  R+  A+E F  M   G  PN
Sbjct: 457 --------EAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPN 508

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            V Y+S I  + +  ++ KA E++ +M +     P    ++ IIH+LC  GRV++A D  
Sbjct: 509 TVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVF 568

Query: 382 AELVDGGSVPREYTYKLVCDA 402
             ++  G  P   T+  + D 
Sbjct: 569 NLVIHIGDRPTIVTFNSLIDG 589



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 130/305 (42%), Gaps = 35/305 (11%)

Query: 97  LGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLK 156
           L  A  +  Q +++GL   T  YH +   F        C    +V A+        + + 
Sbjct: 490 LADAMEKFSQMISIGLEPNTVVYHSLIHGF--------CMHGDLVKAK--------ELVS 533

Query: 157 DMSRRG--NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           +M  +G     +V  SS+   I  L  EG V +A   F  +     RP +  +N +I+  
Sbjct: 534 EMMSKGIPRPNIVFFSSI---IHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGY 590

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           C VG   KA  +L+ M   G    PDV TY  L+S YCK G           +I +   L
Sbjct: 591 CLVGKMEKAFGVLDAMVSVGIE--PDVVTYNTLVSGYCKSG-----------KIDDGLIL 637

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           FR ML K   P  V Y+ ++DG     R   A ++F +M   G   +  TY   ++    
Sbjct: 638 FREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCR 697

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
            +  D+AI +  K+  ++     +   T +I+AL +  R  EA D  A +   G VP   
Sbjct: 698 NDLTDEAITLFHKLGAMDCKFDITILNT-VINALYKVRRREEANDLFAAISTSGLVPNVS 756

Query: 395 TYKLV 399
           TY ++
Sbjct: 757 TYGVM 761



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 15/209 (7%)

Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILI 248
           A F R+ +   R      N  +  LC     ++A   LL +M   G  C P+  +Y  +I
Sbjct: 177 AFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHRMSDLG--CVPNAISYNTVI 234

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
            S C           ++R   E              PDVV++N +I G  K   + +A  
Sbjct: 235 KSLCGDSRSQEALDMVQRMAKEGGRC---------SPDVVSFNTVIHGFFKQGEVSKACN 285

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
           L ++M +KG  P+ VTYNS +        +DKA  ++R+M  ++ GV P   +YT IIH 
Sbjct: 286 LINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQM--VDKGVEPDGLTYTAIIHG 343

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTY 396
              +G   E+     ++   G +P   T+
Sbjct: 344 YSCSGHWKESAKMFRKMTSKGLIPGIVTF 372



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
           P  V+TY IL+   C+            RR       F  +L  G     +  N  +   
Sbjct: 153 PLSVHTYGILMDCCCR-----------ARRPDLGPAFFARLLRAGLRTRTIEANTFLKCL 201

Query: 298 CKTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-QNLNHGV 355
           C   R + A++ L   M+  GC+PN ++YN+ I+     +   +A++M+++M +      
Sbjct: 202 CHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCS 261

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415
           P   S+  +IH   + G V +A + + E+V  G  P   TY  + DAL  A      +  
Sbjct: 262 PDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELV 321

Query: 416 LRKRIRDGIE 425
           LR+ +  G+E
Sbjct: 322 LRQMVDKGVE 331



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 26/194 (13%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           + G +++ L  F  M   + +P    Y++V++ L   G  + A+ +  +M   G     D
Sbjct: 627 KSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSG--TAVD 684

Query: 241 VYTYTILISSYCKYGMQ------------TGCRKAIR------------RRIWEANHLFR 276
           + TY IL+   C+  +               C+  I             RR  EAN LF 
Sbjct: 685 IDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFA 744

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            +   G VP+V  Y  +I    K   +E A  +F  M K GC P+    N  IR      
Sbjct: 745 AISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKG 804

Query: 337 EIDKAIEMMRKMQN 350
           +I KA   M K+  
Sbjct: 805 DIVKAGYYMSKVDG 818



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 18/167 (10%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G  V   +   L+K L    L +EA+  F+++    C+ D+   N VINAL +V    +
Sbjct: 679 SGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREE 738

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------QTGCRKAIRRRIWE 270
           A  L   +   G    P+V TY ++I +  K G             ++GC  + R     
Sbjct: 739 ANDLFAAISTSGL--VPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRL---- 792

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
            N + R++L KG +     Y   +DG   +        L    + KG
Sbjct: 793 LNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKG 839


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 126/277 (45%), Gaps = 27/277 (9%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  +T ++   L+  L  +G   EA      M       DV+ YN++IN  C+ GN  KA
Sbjct: 287 GVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKA 346

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK----AIRR------------- 266
             + E M   G R    V TYT LI +  K G      K    A+RR             
Sbjct: 347 LEIFENMSRRGVRA--TVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI 404

Query: 267 -------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   I  A  +   M  K   PD V YN L+ G C   R++ A +L D+M K+G  
Sbjct: 405 NSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQ 464

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ VTYN+ I  YS+  ++  A+ +  +M N     PT  +Y  +I  LC+ G+  +A +
Sbjct: 465 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFN-PTLLTYNALIQGLCKNGQGDDAEN 523

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            + E+V+ G  P + TY  + + L   +E ++ D+ L
Sbjct: 524 MVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERL 560



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 116/267 (43%), Gaps = 34/267 (12%)

Query: 113 NKATEFYHWVERF------FDFFHNEMT----CKEMGIVFARGNNVKGLWDFLKDMSRRG 162
            + TE Y  VE         D F   +     CKE         NVK   +  ++MSRRG
Sbjct: 306 GRGTEAYELVEEMGGKGLALDVFTYNILINGHCKE--------GNVKKALEIFENMSRRG 357

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
               V T   T LI  L ++G V E    F    +   RPD+  YN +IN+    GN ++
Sbjct: 358 VRATVVT--YTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDR 415

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  ++ +ME    R  PD  TY  L+   C  G           R+ EA  L   M  +G
Sbjct: 416 AFEIMGEMEKK--RIAPDDVTYNTLMRGLCLLG-----------RVDEARKLIDEMTKRG 462

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PD+V YN LI G      ++ AL + ++M  KG  P  +TYN+ I+      + D A 
Sbjct: 463 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 522

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALC 369
            M+++M   N   P  S+Y  +I  L 
Sbjct: 523 NMVKEMVE-NGITPDDSTYISLIEGLT 548



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 26/239 (10%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           ++T+S+  L+  L        A A F  M + R       +N+++  LC  G   +A  L
Sbjct: 121 ISTASLHPLLSALPSA----PAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALEL 176

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-P 285
           L QM  P      +  TY  +I+ +C  G           R+  A  + R M  +G + P
Sbjct: 177 LRQMPRP------NAVTYNTVIAGFCSRG-----------RVQAALDIMREMRERGGIAP 219

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEM 344
           +   Y  +I G CK  R++ A+++FD+M  KG + P  V YN+ I  Y    ++D A+  
Sbjct: 220 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 279

Query: 345 MRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             +M  +  GV  T ++Y  ++HAL   GR  EA + + E+   G     +TY ++ + 
Sbjct: 280 RDRM--VERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILING 336



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 16/170 (9%)

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R P    T+ I++   C  G           +   A  L R M      P+ V YN +I
Sbjct: 148 LRLPLCTTTFNIMLRHLCSAG-----------KPARALELLRQMPR----PNAVTYNTVI 192

Query: 295 DGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
            G C   R++ AL++  +M ++G I PN+ TY + I  +  V  +D+A+++  +M     
Sbjct: 193 AGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGE 252

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P +  Y  +I   C+ G++  A  +   +V+ G      TY L+  AL
Sbjct: 253 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHAL 302


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 143/320 (44%), Gaps = 29/320 (9%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V+AR  N + + +    M  RG    + + +     KV     +   A+     + +F  
Sbjct: 273 VYARNGNFEKVNEMFNLMRERGCEPDIVSFNTLINAKVKSCATVSGLAIELLDEVGKFGL 332

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           RPD+  YN +I+A  R  N  +A  +   ME    RC PD++TY  +IS Y + G     
Sbjct: 333 RPDIITYNTLISACSRESNLKEAIGVFSHME--SNRCQPDLWTYNAMISVYGRCGFAL-- 388

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                    +A HLF  +   GF PD V YN L+    K    E+  ++ ++M K G   
Sbjct: 389 ---------KAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGK 439

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + +TYN+ I  Y      D+A+ + R M++     P + +YT +I  L +A ++ EA   
Sbjct: 440 DEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRN-PDAVTYTVLIDLLGKASKIEEASKV 498

Query: 381 LAELVDGGSVPREYTYK-LVC------------DALNAAEEPSLLDDGLRKRIRDGIEYR 427
           ++E++D G  P  +TY  L+C            +  N   E  +  D L   +      R
Sbjct: 499 MSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLR 558

Query: 428 FRQVMKVKPIMKHKELLKCG 447
           F ++ K   +  ++E+++ G
Sbjct: 559 FNEIKKAAAL--YQEMIEAG 576



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 109/263 (41%), Gaps = 19/263 (7%)

Query: 155  LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
            L+DM  +     ++ SS+  +++   + G + E    +  MK     P ++ Y ++I  L
Sbjct: 885  LQDMDLK-----ISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLL 939

Query: 215  CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
            CR       R +L +M   GF+  PD+  +  ++  Y                      +
Sbjct: 940  CRFKRVRDVRVMLSEMGEAGFK--PDLQIFNSVLKLYSSI-----------EEFQNMGVI 986

Query: 275  FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
            ++++   G  PD   YN LI   C+ +R E  L L   M   G  P R TY S I  +S 
Sbjct: 987  YQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSK 1046

Query: 335  VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
                D+A E+  ++++  + +   S Y  ++     +G   +A + L  + + G  P   
Sbjct: 1047 QQLYDQAEELFEELRSNGYKL-DRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTA 1105

Query: 395  TYKLVCDALNAAEEPSLLDDGLR 417
            T  L+  +   + +P   D  L+
Sbjct: 1106 TMHLLMVSYGKSGQPEEADRILK 1128



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 13/183 (7%)

Query: 174  CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
             +I    ++ L ++A   F  ++    + D   Y++++      G+  KA  LLE M+  
Sbjct: 1039 SMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEA 1098

Query: 234  GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
            G    P+  T  +L+ SY K G              EA+ + + +   G V D + Y+ +
Sbjct: 1099 GIE--PNTATMHLLMVSYGKSGQPE-----------EADRILKNLRTMGAVLDTLPYSSV 1145

Query: 294  IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
            ID   K    +  +E   +M +    P+   +  FIR  S+  E++ A  ++  +Q +  
Sbjct: 1146 IDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNALQAVGF 1205

Query: 354  GVP 356
             +P
Sbjct: 1206 DLP 1208



 Score = 38.9 bits (89), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + + LI    + G   EA  TF RM++   + D  AY+V+++   R     KA  L 
Sbjct: 510 TLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALY 569

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGM 256
           ++M   GF   PD   Y +++ +  +  M
Sbjct: 570 QEMIEAGF--TPDTGLYEVMLPALVRENM 596


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 163/374 (43%), Gaps = 50/374 (13%)

Query: 51  VLKSIP-------RFFFQSP-------RSIGRQTGFRHRTPLRQRILKKEAYNIANNVLV 96
           VLKSIP       RF  +         R +GR  G      LR     K    + N +  
Sbjct: 118 VLKSIPQSREEAGRFDVEEDESRHPLVREVGRLIG------LRSSWNPKHEGQMRNLLRS 171

Query: 97  LGPAAY------RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKG 150
           L P+        +D ++V L      +F++W +R + + H+ M    M  V ++    +G
Sbjct: 172 LKPSQVCAVLRSQDDERVAL------KFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQG 225

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
               L  M RRG     T  + + ++      G + +AL     M++    P++   N  
Sbjct: 226 SRRVLVLMKRRGIYR--TPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTT 283

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           I+   R     KA   LE+M++ G    P+V TY  +I  YC              R+ E
Sbjct: 284 IDVFVRANRLEKALRFLERMQVVGI--VPNVVTYNCMIRGYCDL-----------HRVEE 330

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK-GCIPNRVTYNSFI 329
           A  L   M  KG +PD V+Y  ++   CK  RI    +L   M K+ G +P++VTYN+ I
Sbjct: 331 AIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLI 390

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
              +  +  D+A+  ++  Q     +     Y+ I+HALC+ GR+ EA+D + E++  G 
Sbjct: 391 HMLTKHDHADEALWFLKDAQEKGFRI-DKLGYSAIVHALCKEGRMSEAKDLINEMLSKGH 449

Query: 390 VPRE-YTYKLVCDA 402
            P +  TY  V + 
Sbjct: 450 CPPDVVTYTAVVNG 463



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 127/276 (46%), Gaps = 31/276 (11%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAY 207
           + LW FLKD   +G    +     + ++  L +EG ++EA      M  +  C PDV  Y
Sbjct: 401 EALW-FLKDAQEKGF--RIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTY 457

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK----- 262
             V+N  CR+G  +KA+ LL+ M   G +  P+  +YT L++  C+ G     R+     
Sbjct: 458 TAVVNGFCRLGEVDKAKKLLQVMHTHGHK--PNTVSYTALLNGMCRTGKSLEAREMMNMS 515

Query: 263 -----------------AIRR--RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
                             +RR  ++ EA  + R M+ KGF P  V  N L+   C+  R 
Sbjct: 516 EEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRT 575

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
             A +  ++   KGC  N V + + I  +   +E+D A+ ++  M  +N       +YT 
Sbjct: 576 HEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADV-FTYTT 634

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           ++  L + GR+ EA + + +++  G  P   TY+ V
Sbjct: 635 LVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTV 670



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 118/253 (46%), Gaps = 18/253 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVI 211
           + L+DM  +G   L    S   ++  L +E  + E      +M K+    PD   YN +I
Sbjct: 333 ELLEDMHSKGC--LPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLI 390

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + L +  + ++A + L+  +  GFR   D   Y+ ++ + CK G           R+ EA
Sbjct: 391 HMLTKHDHADEALWFLKDAQEKGFRI--DKLGYSAIVHALCKEG-----------RMSEA 437

Query: 272 NHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
             L   ML KG  P DVV Y  +++G C+   +++A +L   M+  G  PN V+Y + + 
Sbjct: 438 KDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLN 497

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                 +  +A EMM  M   +   P S +Y+ I+H L   G++ EA D + E+V  G  
Sbjct: 498 GMCRTGKSLEAREMM-NMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFF 556

Query: 391 PREYTYKLVCDAL 403
           P      L+  +L
Sbjct: 557 PGPVEINLLLQSL 569



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 16/217 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + ++  L  EG ++EA      M      P     N+++ +LCR G  ++AR  +E+   
Sbjct: 528 SVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLN 587

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C  +V  +T +I  +C+              +  A  +   M       DV  Y  
Sbjct: 588 KG--CAINVVNFTTVIHGFCQ-----------NDELDAALSVLDDMYLINKHADVFTYTT 634

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+D   K  RI  A EL   M  KG  P  VTY + I  Y  + ++D  + ++ KM +  
Sbjct: 635 LVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQ 694

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                 + Y  +I  LC  G++ EA   L +++   S
Sbjct: 695 ---KCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTAS 728


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 24/270 (8%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           TCK  G         K     L +M  +G    + T +V  ++  + +EG V++A+    
Sbjct: 2   TCKRSG--------YKQAMKLLDEMRDKGCTPDIVTYNV--VVNGICQEGRVDDAIEFLK 51

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            +  + C P+  +YN+V+  LC    +  A  L+ +M   G  CPP+V T+ +LIS  C+
Sbjct: 52  NLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKG--CPPNVVTFNMLISFLCR 109

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G+           +  A  +   +   G  P+ ++YN L+   CK  ++++A+   D M
Sbjct: 110 KGL-----------VEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 158

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
             +GC P+ V+YN+ +       E+D A+E++ ++++     P   SY  +I  L +AG+
Sbjct: 159 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKD-KGCAPVLISYNTVIDGLTKAGK 217

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             EA + L E+V  G  P   TY  +   L
Sbjct: 218 TKEALELLNEMVSKGLQPDIITYSTIAAGL 247



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 20/243 (8%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           +A+     M+   C PD+  YNVV+N +C+ G  + A   L+   LP + C P+  +Y I
Sbjct: 10  QAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKN--LPSYGCEPNTVSYNI 67

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           ++   C              R  +A  L   M  KG  P+VV +N LI   C+   +E A
Sbjct: 68  VLKGLCT-----------AERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPA 116

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
           LE+ + + K GC PN ++YN  +  +    ++DKA+  +  M  ++ G  P   SY  ++
Sbjct: 117 LEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM--VSRGCYPDIVSYNTLL 174

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA----EEPSLLDDGLRKRIR 421
            ALC +G V  A + L +L D G  P   +Y  V D L  A    E   LL++ + K ++
Sbjct: 175 TALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQ 234

Query: 422 DGI 424
             I
Sbjct: 235 PDI 237



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 132/271 (48%), Gaps = 26/271 (9%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + + +M ++G    V T ++  LI  L  +GLV  AL    ++ ++ C P+  +YN +++
Sbjct: 83  ELMGEMGQKGCPPNVVTFNM--LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLH 140

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           A C+    +KA   L+ M   G  C PD+ +Y  L+++ C+ G            +  A 
Sbjct: 141 AFCKQKKMDKAMAFLDLMVSRG--CYPDIVSYNTLLTALCRSG-----------EVDVAV 187

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L   +  KG  P +++YN +IDG  K  + + ALEL ++M  KG  P+ +TY++     
Sbjct: 188 ELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGL 247

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
              + I+ AI    K+Q++  G+ P +  Y  II  LC+      A D  A ++  G +P
Sbjct: 248 CREDRIEDAIRAFGKVQDM--GIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMP 305

Query: 392 REYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            E TY ++ + L          +GL K  RD
Sbjct: 306 NESTYTILIEGLAY--------EGLIKEARD 328


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 140/323 (43%), Gaps = 32/323 (9%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M  VF  G   KG   F +  SR   G +    S + LI  L + G   E    FY MK+
Sbjct: 554 MDCVFKAGETGKGRALFEEIKSR---GFIPDVMSYSILIHGLVKAGFARETYELFYAMKE 610

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
             C  D +AYN  I+  C+ G  NKA  LLE+M+  G +  P V TY  +I    K    
Sbjct: 611 QGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQ--PTVVTYGSVIDGLAKI--- 665

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    R+ EA  LF      G   +VV Y+ LIDG  K  RI+ A  + +++ +KG
Sbjct: 666 --------DRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG 717

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             PN  T+N  +       EI++A+   + M+NL  G P   +Y+ +I+ LC   +  +A
Sbjct: 718 LTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLK-GTPNHITYSILINGLCRVRKFNKA 776

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLL----------DDGLRKRIRDG 423
             F  E+   G  P   TY  +   L    N AE  SL           D      I +G
Sbjct: 777 FVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEG 836

Query: 424 IEYRFRQVMKVKPIMKHKELLKC 446
           + Y  R+ M+   I +   +  C
Sbjct: 837 LSYS-RRAMEAYKIFEETRMKGC 858



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 16/237 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LIK   + G   +    F  M    C PD+   N  ++ + + G   K R L E+++ 
Sbjct: 516 TSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKS 575

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            GF   PDV +Y+ILI    K G          R  +E   LF  M  +G V D  AYN 
Sbjct: 576 RGF--IPDVMSYSILIHGLVKAGFA--------RETYE---LFYAMKEQGCVLDTHAYNT 622

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
            IDG CK+ ++ +A +L ++M  KG  P  VTY S I   + ++ +D+A  +  + +  +
Sbjct: 623 FIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK--S 680

Query: 353 HGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           +G+  +   Y+ +I    + GR+ EA   + EL+  G  P  YT+  + DAL  AEE
Sbjct: 681 NGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE 737



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 124/280 (44%), Gaps = 18/280 (6%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           ++ A +F+H ++       +++T   M  V  +GN +    +  + M +  N  +    +
Sbjct: 284 VDMAWKFFHEIKSH-GLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRN--VPCAYA 340

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              +I   G  G  +EA +   R K   C P V AYN ++  L + G   +A    E+M+
Sbjct: 341 YNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMK 400

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
                  P++ TY +LI   CK G      K +R  + EA          G  P+V+  N
Sbjct: 401 KDA---APNLSTYNVLIDMLCKAGEVEAAFK-VRDAMKEA----------GLFPNVMTVN 446

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +ID  CK  +++ A  +F+ MN K C P+ VT+ S I        +D A  +  +M + 
Sbjct: 447 IMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDS 506

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           +  +P +  YT +I +  + GR  +      E++  G  P
Sbjct: 507 DK-IPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSP 545



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 128/301 (42%), Gaps = 32/301 (10%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEM--GIVFARGNNVKGLWDF----LKDMSRRGNGE 165
           +N+A  ++ W ER  D    +  C E    ++     NVK  +D+    L +MS  G G 
Sbjct: 108 VNQAISYFRWTERKTD----QALCPEAYDSLLLVMAKNVK--FDYFEQILGEMSIAGFG- 160

Query: 166 LVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
               S+ TC+  +L   +   + E       M++F+ RP   AY  +I AL  V   +  
Sbjct: 161 ---PSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIM 217

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L  QM+  G+     V+ +T +I  + + G           R+  A  L   M     
Sbjct: 218 LTLFHQMQELGYEVS--VHLFTTVIRVFAREG-----------RLDAALSLLDEMKSNCL 264

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
             D+V YN  ID   K  +++ A + F ++   G +P+ VTY S I      N +D+A+E
Sbjct: 265 HADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVE 324

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  +M+  N  VP + +Y  +I     AG+  EA   L      G +P    Y  +   L
Sbjct: 325 IFEQMEQ-NRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCL 383

Query: 404 N 404
            
Sbjct: 384 G 384



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 18/260 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  V+    T +I+V   EG ++ AL+    MK      D+  YNV I+   + G  + A
Sbjct: 228 GYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMA 287

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
                +++  G    PD  TYT +I   CK             R+ EA  +F  M     
Sbjct: 288 WKFFHEIKSHGLL--PDDVTYTSMIGVLCK-----------GNRLDEAVEIFEQMEQNRN 334

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           VP   AYN +I G     + + A  L +    +GCIP+ + YN  +        + +A+ 
Sbjct: 335 VPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALR 394

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              +M+      P  S+Y  +I  LC+AG V  A      + + G  P   T  ++ D L
Sbjct: 395 TFEEMKK--DAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRL 452

Query: 404 NAA---EEPSLLDDGLRKRI 420
             A   +E   + +G+  +I
Sbjct: 453 CKAKKLDEACSIFEGMNHKI 472



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 116/268 (43%), Gaps = 28/268 (10%)

Query: 160 RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
           ++  G + +  +  C++  LG++G + EAL TF  MK+    P++  YNV+I+ LC+ G 
Sbjct: 364 QKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKK-DAAPNLSTYNVLIDMLCKAGE 422

Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY-----------GMQ---------TG 259
              A  + + M+  G    P+V T  I+I   CK            GM          T 
Sbjct: 423 VEAAFKVRDAMKEAGLF--PNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTF 480

Query: 260 CRK----AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
           C        + R+ +A  L+  ML    +P+ V Y  LI    K  R E   ++F +M  
Sbjct: 481 CSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIH 540

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
           +GC P+    N+++       E  K   +  ++++    +P   SY+ +IH L +AG   
Sbjct: 541 RGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGF-IPDVMSYSILIHGLVKAGFAR 599

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           E  +    + + G V   + Y    D  
Sbjct: 600 ETYELFYAMKEQGCVLDTHAYNTFIDGF 627


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 117/282 (41%), Gaps = 54/282 (19%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           RG G      S   LI    + G + +A + F  M Q     +V  YN+++   CR G  
Sbjct: 622 RGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEI 681

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            KA+ LL++M   GF  PP+  TY  +I  YCK G            + EA  LF  M  
Sbjct: 682 EKAKELLDEMSGKGF--PPNAVTYCTIIDGYCKSG-----------DLAEAFQLFDEMKL 728

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI--------------------- 319
           KG VPD   Y  L+DGCC+   +ERA+ +F+  N+KGC                      
Sbjct: 729 KGLVPDSFVYTTLVDGCCRLNDVERAITIFE-TNEKGCASSSAPFNALINWVFKFGKTEL 787

Query: 320 ------------------PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
                             PN VTYN  I Y      ++ A E+   MQ  N  +PT  +Y
Sbjct: 788 TTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANL-MPTVITY 846

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           T +++   + GR  E      E++  G  P    Y ++ +A 
Sbjct: 847 TSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAF 888



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 19/244 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + T L+  L + G VN+A   F+ M+     PDV++Y  +I+   ++GN  KA
Sbjct: 590 GILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKA 649

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             + ++M   G     +V  Y +L+  +C+ G            I +A  L   M  KGF
Sbjct: 650 SSIFDEMVQAGL--TSNVIIYNMLLGGFCRSG-----------EIEKAKELLDEMSGKGF 696

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+ V Y  +IDG CK+  +  A +LFD+M  KG +P+   Y + +     +N++++AI 
Sbjct: 697 PPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAIT 756

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG----SVPREYTYKLV 399
           +     N      +S+ +  +I+ + + G+     D +  L+DG       P + TY ++
Sbjct: 757 IFE--TNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIM 814

Query: 400 CDAL 403
            D L
Sbjct: 815 IDYL 818



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 14/197 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    ++G V EA + F  M +     D   Y V++N L + G  N A  +  +M  
Sbjct: 564 TGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRG 623

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PDV++Y  LI  + K G            + +A+ +F  M+  G   +V+ YN 
Sbjct: 624 KGI--APDVFSYGTLIDGFSKLG-----------NMQKASSIFDEMVQAGLTSNVIIYNM 670

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+ G C++  IE+A EL D+M+ KG  PN VTY + I  Y    ++ +A ++  +M+ L 
Sbjct: 671 LLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMK-LK 729

Query: 353 HGVPTSSSYTPIIHALC 369
             VP S  YT ++   C
Sbjct: 730 GLVPDSFVYTTLVDGCC 746



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 22/211 (10%)

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           Y Y   +  +C  G+ + A  ++++M   G  C P+V  YT LI ++ +           
Sbjct: 421 YTYGTAVKGMCSSGDLDGAYNIVKEMGASG--CRPNVVIYTTLIKTFLQ----------- 467

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           + R  +A  + + M  +G  PD   YN LI G  K  +++ A     +M + G  P+  T
Sbjct: 468 KSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFT 527

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAE 383
           Y +FI  Y    E   A + +++M  L  GV P     T +I+  C+ G+V+EA      
Sbjct: 528 YGAFISGYIEAGEFASADKYVKEM--LECGVIPNKVLCTGLINEYCKKGKVIEACSAFRS 585

Query: 384 LVDGGSVPREYTYKLVCDAL------NAAEE 408
           +V+ G +    TY ++ + L      N AEE
Sbjct: 586 MVEQGILGDAKTYTVLMNGLVKNGKVNDAEE 616



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 127/309 (41%), Gaps = 59/309 (19%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           ++ G ++ +K+M   G    V     T LIK   ++    +A+     M++    PD + 
Sbjct: 435 DLDGAYNIVKEMGASGCRPNVVI--YTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFC 492

Query: 207 YNVVINALCRVGNFNKAR-FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           YN +I  L +    ++AR FLLE +E  GF+  PD +TY   IS Y + G          
Sbjct: 493 YNSLIIGLSKAKKMDEARSFLLEMVE-NGFK--PDAFTYGAFISGYIEAG---------- 539

Query: 266 RRIWEANHLFRLMLFKGFVP-----------------------------------DVVAY 290
                A+   + ML  G +P                                   D   Y
Sbjct: 540 -EFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTY 598

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             L++G  K  ++  A E+F +M  KG  P+  +Y + I  +S +  + KA  +  +M  
Sbjct: 599 TVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEM-- 656

Query: 351 LNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNA 405
           +  G+ ++   Y  ++   C +G + +A++ L E+   G  P   TY  +    C + + 
Sbjct: 657 VQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDL 716

Query: 406 AEEPSLLDD 414
           AE   L D+
Sbjct: 717 AEAFQLFDE 725



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 125/302 (41%), Gaps = 29/302 (9%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTT-SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           NV    +  K MS +G   LV +  S   LI  L ++  + +A +    M       D  
Sbjct: 260 NVDEALELKKSMSCKG---LVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNV 316

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI--------------LISSY 251
           AY+++I+ L +  N + A  L+ +M   GF   P +Y Y I              L    
Sbjct: 317 AYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGM 376

Query: 252 CKYGMQTGCRKAI--------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
             +G+  G R            + + +   L   +  +  V     Y   + G C +  +
Sbjct: 377 ITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDL 436

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYT 362
           + A  +  +M   GC PN V Y + I+ +   +    A+ ++++M+    G+ P +  Y 
Sbjct: 437 DGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMRE--QGIAPDTFCYN 494

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  L +A ++ EAR FL E+V+ G  P  +TY         A E +  D  +++ +  
Sbjct: 495 SLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLEC 554

Query: 423 GI 424
           G+
Sbjct: 555 GV 556



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 19/174 (10%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P+   YN++I+ LC+ GN   A+ L   M+       P V TYT L++ Y K G ++  
Sbjct: 805 KPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLM--PTVITYTSLLNGYDKMGRRS-- 860

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK---- 316
                    E   +F  ++  G  PD + Y+ +I+   K     +AL L D M  K    
Sbjct: 861 ---------EMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVD 911

Query: 317 -GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
            GC  +  T  + +  ++ V E++ A +++  M  L + +P SS+   +I+  C
Sbjct: 912 DGCKLSISTCRALLSGFAKVGEMEVAEKVVENMVRLKY-IPDSSTVIELINESC 964



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 23/248 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQFR 199
           F R   ++   + L +MS +G       ++VT    + G  + G + EA   F  MK   
Sbjct: 675 FCRSGEIEKAKELLDEMSGKG----FPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKG 730

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             PD + Y  +++  CR+ +  +A  + E  E     C      +  LI+   K+G +T 
Sbjct: 731 LVPDSFVYTTLVDGCCRLNDVERAITIFETNEKG---CASSSAPFNALINWVFKFG-KTE 786

Query: 260 CRKAIRRRIWEANHLFRLMLFKGF-VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
               +  R+ + +       F  F  P+ V YN +ID  CK   +E A ELF  M K   
Sbjct: 787 LTTDMINRLMDGS-------FDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANL 839

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN-LNHGV-PTSSSYTPIIHALCEAGRVLE 376
           +P  +TY S +  Y   +++ +  EM       +  G+ P +  Y+ II+A  + G   +
Sbjct: 840 MPTVITYTSLLNGY---DKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTK 896

Query: 377 ARDFLAEL 384
           A   L ++
Sbjct: 897 ALVLLDQM 904



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 13/168 (7%)

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRR----------RIWEANHLFRLMLFKGFVPDVVA 289
           DV +Y +LI ++C+ G     +  + +           + EA  L + M  KG VP   +
Sbjct: 223 DVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNVDEALELKKSMSCKGLVPSRQS 282

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN LIDG CK  R+E A  L  +MN  G   + V Y+  I         D A  ++ +M 
Sbjct: 283 YNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEM- 341

Query: 350 NLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            ++HG       Y   I  + + G + +A+     ++  G  P    Y
Sbjct: 342 -VSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAY 388


>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 408

 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 12/210 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + +A+  F  MK      D Y +N +++A C+ GN  + + ++  M   G +  PD+ 
Sbjct: 203 GRLKDAIGLFNDMKLENVEADEYTFNTLVSAFCKEGNVREGKAVVAVMMKEGVK--PDII 260

Query: 243 TYTILISSYC--------KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           TY  L+  YC        K    T  ++ +   +   N LF+ M  K  +PD +AY+ LI
Sbjct: 261 TYNSLMDGYCLVKEVDKAKNIFNTMVQRGVTANVRTMN-LFQEMHCKEIIPDTIAYSSLI 319

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+ RI +ALEL D+M+ +G  PN +TYNS +     ++ ++K I ++RK++ +   
Sbjct: 320 DGFCKSGRIPQALELVDEMHDRGQPPNIITYNSILYALCKIHHVEKTIALLRKIK-VKGI 378

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            P + +YT + + L + GR+ EAR+   +L
Sbjct: 379 QPDAYTYTILTNGLFKDGRLEEAREIFPDL 408



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 115/249 (46%), Gaps = 32/249 (12%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I  L ++ LV++A   +  M   R  PDV+ YN +I   C VG    A  L   M+L
Sbjct: 158 TAIINGLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKL 217

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
                  D YT+  L+S++CK G            + E   +  +M+ +G  PD++ YN 
Sbjct: 218 ENVEA--DEYTFNTLVSAFCKEG-----------NVREGKAVVAVMMKEGVKPDIITYNS 264

Query: 293 LIDGCCKTYRIERA------------------LELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           L+DG C    +++A                  + LF +M+ K  IP+ + Y+S I  +  
Sbjct: 265 LMDGYCLVKEVDKAKNIFNTMVQRGVTANVRTMNLFQEMHCKEIIPDTIAYSSLIDGFCK 324

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
              I +A+E++ +M +     P   +Y  I++ALC+   V +    L ++   G  P  Y
Sbjct: 325 SGRIPQALELVDEMHDRGQP-PNIITYNSILYALCKIHHVEKTIALLRKIKVKGIQPDAY 383

Query: 395 TYKLVCDAL 403
           TY ++ + L
Sbjct: 384 TYTILTNGL 392



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 135/321 (42%), Gaps = 34/321 (10%)

Query: 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN 186
           +F H+         ++ + NN     + +   +R  N   + T  ++   ++L    L N
Sbjct: 20  NFIHSFRFSSSPSTIYTQFNNNPHHENLISRFNRLTNQ--IPTPPISQFGRILASLALSN 77

Query: 187 --EALATFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
                 +F++   F+  +PD++ YNV+IN   ++G+     FL             D  +
Sbjct: 78  RYSIALSFHQKLHFKGIKPDLFTYNVLINCFSQLGH---THFL-------------DRVS 121

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           Y  LI+  CK G      +A  R + E N        K    DVV Y  +I+G CK   +
Sbjct: 122 YETLINGLCKVGET----RAALRLLKEVNE-------KIVQYDVVMYTAIINGLCKDKLV 170

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           + A +L+ +M  K   P+  TYN+ I  + VV  +  AI +   M+ L +      ++  
Sbjct: 171 DDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMK-LENVEADEYTFNT 229

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           ++ A C+ G V E +  +A ++  G  P   TY  + D     +E     +     ++ G
Sbjct: 230 LVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQRG 289

Query: 424 IEYRFRQVMKVKPIMKHKELL 444
           +    R  M +   M  KE++
Sbjct: 290 VTANVR-TMNLFQEMHCKEII 309



 Score = 45.4 bits (106), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + LI    + G + +AL     M      P++  YN ++ ALC++ +  K   LL 
Sbjct: 312 TIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIITYNSILYALCKIHHVEKTIALLR 371

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG 255
           ++++ G +  PD YTYTIL +   K G
Sbjct: 372 KIKVKGIQ--PDAYTYTILTNGLFKDG 396


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 130/296 (43%), Gaps = 50/296 (16%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCR 201
           +G    G W+ ++++      E    S  T   +I  L +EGL   A+    +M +  C 
Sbjct: 265 KGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCT 324

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            ++  YN V++ LC  G+ + A +LL  M+  G  C P+++TY IL+   C         
Sbjct: 325 ANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDG--CKPNIFTYNILVKGLCNA------- 375

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R  +A  L   M     +PD++ +N +I   C+     +A+E+F  M +KGC PN
Sbjct: 376 ----ERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPN 431

Query: 322 RVTYNSFIRYYS-------------------------------VVNEIDK---AIEMMRK 347
            VTY+S I   +                                +NE DK   AI+M+ K
Sbjct: 432 SVTYSSVIEGLAKTGKMEQSLELLNEMGSKGFNPEINYHLLAECLNEEDKLVEAIQMVHK 491

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +Q+     P +  Y  I+  LC  G+  +A D L+ +V  G +P E TY ++   L
Sbjct: 492 LQDTGIS-PQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGL 546



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 111/261 (42%), Gaps = 28/261 (10%)

Query: 154 FLKDMSRRGN-----------GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
            ++D+ RRG            G   T  + + L       G ++EA      M      P
Sbjct: 94  LVRDLCRRGRPADAARVVEACGSAATAVTYSALADGYCRVGRLDEARRVVDGMPVL---P 150

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
             YAYN +++ALC  G    A  LL+ M   G  C PDV TY IL+ + CK         
Sbjct: 151 SAYAYNPLMHALCVRGQVRDALVLLDNMLYRG--CAPDVVTYNILLEAACK--------- 199

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
              R   +A  L  LM  +G  P  V YN ++DG C+   ++ A EL + +   GC PN 
Sbjct: 200 --GRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNT 257

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           V YN+ ++        +   E++ +M + N   P+ ++ + +I +LC+ G    A   L 
Sbjct: 258 VNYNTVLKGLRTAGRWEDVEELIAEMFSENCP-PSEATLSVVISSLCQEGLFQRAIRLLE 316

Query: 383 ELVDGGSVPREYTYKLVCDAL 403
           ++          TY  V   L
Sbjct: 317 KMSKHDCTANIVTYNAVVSGL 337



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 14/222 (6%)

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           EG V+ A      +  + C P+   YN V+  L   G +     L+ +M      CPP  
Sbjct: 235 EGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMF--SENCPPSE 292

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            T +++ISS C+ G+    ++AIR        L   M       ++V YN ++ G C+  
Sbjct: 293 ATLSVVISSLCQEGLF---QRAIR--------LLEKMSKHDCTANIVTYNAVVSGLCEQG 341

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
            ++ AL L  +M   GC PN  TYN  ++        + A ++M KM   +  +P   ++
Sbjct: 342 HVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTD-CLPDILTF 400

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             II  LC+ G  ++A +   ++ + G  P   TY  V + L
Sbjct: 401 NTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGL 442



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 97/233 (41%), Gaps = 14/233 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L   G V +AL     M    C PDV  YN+++ A C+   + +A  L++ M + G
Sbjct: 158 LMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEG 217

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P   TY +++   C+ G            +  A  L   +   G  P+ V YN ++
Sbjct: 218 --CTPTNVTYNVIMDGMCREG-----------DVDYARELLNSLPSYGCTPNTVNYNTVL 264

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G     R E   EL  +M  + C P+  T +  I          +AI ++ KM   +  
Sbjct: 265 KGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSK-HDC 323

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
                +Y  ++  LCE G V  A   L+ +   G  P  +TY ++   L  AE
Sbjct: 324 TANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAE 376



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 82/176 (46%), Gaps = 14/176 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L ++GL  +A+  F +M +  C P+   Y+ VI  L + G   ++  LL +M   G
Sbjct: 403 IIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKG 462

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F   P++            Y +   C      ++ EA  +   +   G  P  V YN ++
Sbjct: 463 FN--PEI-----------NYHLLAECLNE-EDKLVEAIQMVHKLQDTGISPQAVLYNTIL 508

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
            G C+  + ++A+++  +M   GC+P+  TY+  I+  +    + +A E++  + +
Sbjct: 509 LGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARELLSTLSS 564



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 75/202 (37%), Gaps = 47/202 (23%)

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           CPPDV     L+   C+ G     R A   R+ EA          G     V Y+ L DG
Sbjct: 84  CPPDVALANRLVRDLCRRG-----RPADAARVVEA---------CGSAATAVTYSALADG 129

Query: 297 CCKTYRIER--------------------------------ALELFDDMNKKGCIPNRVT 324
            C+  R++                                 AL L D+M  +GC P+ VT
Sbjct: 130 YCRVGRLDEARRVVDGMPVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVT 189

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YN  +          +A+E++  M+ +    PT+ +Y  I+  +C  G V  AR+ L  L
Sbjct: 190 YNILLEAACKGRGYRQAMELIDLMR-VEGCTPTNVTYNVIMDGMCREGDVDYARELLNSL 248

Query: 385 VDGGSVPREYTYKLVCDALNAA 406
              G  P    Y  V   L  A
Sbjct: 249 PSYGCTPNTVNYNTVLKGLRTA 270


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 123/265 (46%), Gaps = 20/265 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFR 199
           VF+R  ++     + +DM + G   LV  + + T L+      G + EAL     M +  
Sbjct: 267 VFSRNRHLDQALVYFRDMKKFG---LVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQG 323

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C  DV AYN ++N LC+      A  L ++M   G    PD YT+T LI  +C+ G  T 
Sbjct: 324 CVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG--ALPDFYTFTTLIHGHCQDGNMT- 380

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                     +A  LF  M  +   PD+VAYN LIDG CK   +E+A EL+D M  +   
Sbjct: 381 ----------KALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIF 430

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           PN +TY   I  Y  V  + +A  +   M  +  G+ PT  +   +I   C +G   +A 
Sbjct: 431 PNHITYGILINAYCSVGHVSEAFRLWDVM--IEKGIKPTLVTCNTVIKGYCRSGDSSKAD 488

Query: 379 DFLAELVDGGSVPREYTYKLVCDAL 403
           +FL  ++  G  P   +Y  + +  
Sbjct: 489 EFLGRMIAKGVAPDHISYNTLINGF 513



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 115/233 (49%), Gaps = 14/233 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + T LI    ++G + +AL+ F  M Q   +PD+ AYN +I+  C+VG   KA
Sbjct: 358 GALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKA 417

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L + M     +  P+  TY ILI++YC  G            + EA  L+ +M+ KG 
Sbjct: 418 SELWDGM--ISRKIFPNHITYGILINAYCSVG-----------HVSEAFRLWDVMIEKGI 464

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P +V  N +I G C++    +A E    M  KG  P+ ++YN+ I  +   + +DKA  
Sbjct: 465 KPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFL 524

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            + KM+     +P   +Y  +++  C  GR+ EA   L ++++ G  P   TY
Sbjct: 525 WINKMEK-EGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTY 576



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 119/267 (44%), Gaps = 27/267 (10%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G LV+ ++   L+  L +   V  A      + +     +VY  N+++NALC+ G F
Sbjct: 75  RSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKF 134

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG--------MQTGCRKAIRRRIWEAN 272
           +  +  L +ME  G     D+ TY  LI +YC+ G        M +   K ++  ++  N
Sbjct: 135 DDVKSFLSEMEGNGIY--ADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYN 192

Query: 273 HLFR----------------LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
            +                   ML  G  PD   YN L+   C+      A E+F +M ++
Sbjct: 193 AIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQ 252

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           G +P+ V+++S I  +S    +D+A+   R M+     VP +  YT ++H  C  G +LE
Sbjct: 253 GVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGL-VPDNVIYTVLMHGYCRNGNMLE 311

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A     E+++ G V     Y  + + L
Sbjct: 312 ALKIRDEMLEQGCVLDVIAYNTILNGL 338



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 22/175 (12%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           LWD    M  +G    +  + VTC  +IK     G  ++A     RM      PD  +YN
Sbjct: 455 LWDV---MIEKG----IKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYN 507

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
            +IN   R  N +KA   + +ME  G    PD+ TY ++++ +C+ G           R+
Sbjct: 508 TLINGFVREDNMDKAFLWINKMEKEGL--LPDIITYNVVMNGFCRQG-----------RM 554

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
            EA  + R M+ KG  PD   Y  LI+G      +  A    D+M ++G  P+ V
Sbjct: 555 QEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDDV 609



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 91/224 (40%), Gaps = 53/224 (23%)

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           C  +   + +LI +Y +            R++ E    FR++  KG++  + A N L+ G
Sbjct: 44  CGTNNLVFDLLIRTYVQ-----------ARKLREGTEAFRILRSKGYLVSINACNSLLGG 92

Query: 297 CCKTYRIERALEL----------------------------FDD-------MNKKGCIPN 321
             K   +E A E+                            FDD       M   G   +
Sbjct: 93  LVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYAD 152

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            VTYN+ I  Y     +++A E+M  M   + G+ P+  +Y  II+ LC+ GR   A+  
Sbjct: 153 MVTYNTLIGAYCREGLLEEAFEIMNSMA--DKGLKPSLFTYNAIINGLCKKGRYARAKGI 210

Query: 381 LAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRI 420
           L E+++ G  P   TY  +    C   N +E   +  + LR+ +
Sbjct: 211 LIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGV 254


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 127/290 (43%), Gaps = 35/290 (12%)

Query: 144 RGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           R  N++     L+ M+  G   ++VT ++   L+  L + G + EA     RMK   C P
Sbjct: 164 REKNLEMADSLLQTMAASGVKADVVTYNT---LMDGLCKAGRLQEAEQLLERMKASGCAP 220

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------- 255
           DV AY+  +  LC+ G    A  +LEQM        P+V TY  ++   CK G       
Sbjct: 221 DVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDH--DPNVVTYNTILDGLCKSGKIDTALE 278

Query: 256 ------MQTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                    GC   +              R  EA  +   M   G  PDVV Y+ L++G 
Sbjct: 279 MMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGL 338

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM----QNLNH 353
           CK  +IE A+E   +M  +GC PN VTY S +        + +A  M+ +M       +H
Sbjct: 339 CKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDH 398

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P+ S+Y  +I  LC+AGR+ +A  F   +   G  P   +Y  + + L
Sbjct: 399 CPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGL 448



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 13/212 (6%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M +  C P +  +N +I+  CR  N   A  LL+ M   G +   DV TY  L+   CK 
Sbjct: 143 MIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVK--ADVVTYNTLMDGLCKA 200

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           R+ EA  L   M   G  PDVVAY+  + G CK+ ++  A ++ + M 
Sbjct: 201 G-----------RLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMR 249

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
                PN VTYN+ +       +ID A+EMM +M + +        Y+ ++  LC+ GR 
Sbjct: 250 DSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRT 309

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            EAR  +  +   G  P   TY  + + L  A
Sbjct: 310 QEARSVMEAMARAGCRPDVVTYSSLVNGLCKA 341



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 31/230 (13%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----- 255
           +P+V +YN ++  LC++  +++A  L+  M   G R  PD+ TY+ L+S YCK G     
Sbjct: 42  QPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEES 101

Query: 256 ----------------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
                                 M + C+ A   R+ EA  L   M+  G  P ++ +N L
Sbjct: 102 RELLKEVISRGLRPDALMYTKVMASLCKSA---RLGEALELLEEMIRAGCCPTLITFNTL 158

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I GCC+   +E A  L   M   G   + VTYN+ +        + +A +++ +M+  + 
Sbjct: 159 ISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMK-ASG 217

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P   +Y+  ++ LC++G+VL A   L ++ D    P   TY  + D L
Sbjct: 218 CAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGL 267



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 20/209 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           ++  L + G ++ AL    +M     C  +V  Y+ V++ LC++G   +AR ++E M   
Sbjct: 263 ILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARA 322

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C PDV TY+ L++  CK G           +I EA    R M  +G  P+ V Y  L
Sbjct: 323 G--CRPDVVTYSSLVNGLCKAG-----------KIEEAVEAVREMAMEGCKPNAVTYCSL 369

Query: 294 IDGCCKTYRIERALELFDDMNKKG-----CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           + G C   R+  A  + ++M+  G     C P+  TYN+ I        ID A++  ++M
Sbjct: 370 VHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRM 429

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
           ++     P   SY+ I+  L  +GR L+A
Sbjct: 430 RSQGCD-PDGVSYSTIVEGLARSGRALQA 457



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 87/163 (53%), Gaps = 16/163 (9%)

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           CPP+  T+  L++ + K G           R  +   L   M  +G  P+VV+YN L++G
Sbjct: 6   CPPNSVTFNALVNGFSKQG-----------RPGDCERLLETMAARGIQPNVVSYNGLLEG 54

Query: 297 CCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            CK  R   A EL  DM  +G    P+ VTY++ +  Y    +++++ E+++++  ++ G
Sbjct: 55  LCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEV--ISRG 112

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           + P +  YT ++ +LC++ R+ EA + L E++  G  P   T+
Sbjct: 113 LRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITF 155



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 18/157 (11%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            ++ M+R G   ++VT SS   L+  L + G + EA+     M    C+P+   Y  +++
Sbjct: 315 VMEAMARAGCRPDVVTYSS---LVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVH 371

Query: 213 ALCRVGNFNKARFLLEQMELPGF---RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
            LC  G   +A  ++E+M   G     CPP V TY  LI   CK G           RI 
Sbjct: 372 GLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAG-----------RID 420

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           +A   F+ M  +G  PD V+Y+ +++G  ++ R  +A
Sbjct: 421 DALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 18/126 (14%)

Query: 313 MNKKGCIPNRVTYNSFIRYYSVV---NEIDKAIEMM--RKMQNLNHGVPTSSSYTPIIHA 367
           M++ GC PN VT+N+ +  +S      + ++ +E M  R +Q      P   SY  ++  
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQ------PNVVSYNGLLEG 54

Query: 368 LCEAGRVLEARDFLAELVD--GGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIR 421
           LC+  R  EA + + +++   G S P   TY  +    C A    E   LL + + + +R
Sbjct: 55  LCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLR 114

Query: 422 -DGIEY 426
            D + Y
Sbjct: 115 PDALMY 120


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 129/292 (44%), Gaps = 49/292 (16%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   ++   + +  MS +G    + T    CLI  L ++G + EAL  F  M    C+
Sbjct: 422 FCKQGRLEEAAEIVNSMSAKGLS--LNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCK 479

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPG--------------------------- 234
           PD+Y +N +IN LC+     +A  L   M L G                           
Sbjct: 480 PDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKL 539

Query: 235 -----FR-CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
                FR CP D  TY  LI + CK G       A+ + +     LF  ML KG  P ++
Sbjct: 540 VDEMLFRGCPLDNITYNGLIKALCKTG-------AVEKGLG----LFEEMLGKGIFPTII 588

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           + N LI G C+T ++  AL+   DM  +G  P+ VTYNS I     +  + +A  +  K+
Sbjct: 589 SCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKL 648

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           Q  + G+ P + +Y  +I   C  G   +A   L + VD G +P E T+ ++
Sbjct: 649 Q--SEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSIL 698



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 123/280 (43%), Gaps = 28/280 (10%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           + V      L+DM++ G    V  S +   LI  L E   V+EAL     M    C PDV
Sbjct: 219 SEVDSACSLLRDMAKHG---CVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDV 275

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             +N VI+ LCR G  ++A  LL++M L GF    D  TY  L+   C+ G     R  +
Sbjct: 276 QTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFS--TDALTYGYLMHGLCRMGQVDEARALL 333

Query: 265 RR--------------------RIWEA-NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
            +                    R  EA + L+  M+  G+ PD   +N +IDG  K   +
Sbjct: 334 NKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYL 393

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
             ALEL ++M  K   PN +TY   I  +     +++A E++  M      + T   Y  
Sbjct: 394 VSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNT-VGYNC 452

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +I ALC+ G + EA     E+   G  P  YT+  + + L
Sbjct: 453 LICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGL 492



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 16/218 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L ++G +  AL     M   R  P+V  Y ++IN  C+ G   +A  ++  M   G
Sbjct: 383 MIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKG 442

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                +   Y  LI + CK G            I EA  LF  M  KG  PD+  +N LI
Sbjct: 443 LSL--NTVGYNCLICALCKDG-----------NIEEALQLFGEMSGKGCKPDIYTFNSLI 489

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G CK +++E AL L+ DM  +G I N VTYN+ +  + + + I +A +++ +M  L  G
Sbjct: 490 NGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEM--LFRG 547

Query: 355 VPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
            P  + +Y  +I ALC+ G V +      E++  G  P
Sbjct: 548 CPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFP 585



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 120/262 (45%), Gaps = 21/262 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    ++G + EA      M       +   YN +I ALC+ GN  +A  L  +M
Sbjct: 414 TYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEM 473

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G  C PD+YT+  LI+  CK             ++ EA  L+  M  +G + + V Y
Sbjct: 474 SGKG--CKPDIYTFNSLINGLCK-----------NHKMEEALSLYHDMFLEGVIANTVTY 520

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L+        I++A +L D+M  +GC  + +TYN  I+       ++K + +  +M  
Sbjct: 521 NTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEM-- 578

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NA 405
           L  G+ PT  S   +I  LC  G+V +A  FL +++  G  P   TY  + + L    + 
Sbjct: 579 LGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHV 638

Query: 406 AEEPSLLDDGLRKRIR-DGIEY 426
            E  +L +    + IR D I Y
Sbjct: 639 QEASNLFNKLQSEGIRPDAITY 660



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 94/214 (43%), Gaps = 19/214 (8%)

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            FY M      P VY + VV+ ALC V   + A  LL  M   G  C P+   Y  LI +
Sbjct: 192 VFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHG--CVPNSVIYQTLIHA 249

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            C+             R+ EA  L   M      PDV  +N +I G C+  RI  A +L 
Sbjct: 250 LCE-----------NNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLL 298

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
           D M  +G   + +TY   +     + ++D+A  ++ K+ N     P +  Y  +I     
Sbjct: 299 DRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN-----PNTVLYNTLISGYVA 353

Query: 371 AGRVLEARDFL-AELVDGGSVPREYTYKLVCDAL 403
           +GR  EA+D L   +V  G  P  YT+ ++ D L
Sbjct: 354 SGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGL 387



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 18/221 (8%)

Query: 112 LNKATEFYHWVERFFD-FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           + +A   YH  + F +    N +T   +   F   ++++  +  + +M  RG    +   
Sbjct: 498 MEEALSLYH--DMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCP--LDNI 553

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +   LIK L + G V + L  F  M      P + + N++I+ LCR G  N A   L+ M
Sbjct: 554 TYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDM 613

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PD+ TY  LI+  CK G            + EA++LF  +  +G  PD + Y
Sbjct: 614 IHRGLT--PDIVTYNSLINGLCKMG-----------HVQEASNLFNKLQSEGIRPDAITY 660

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
           N LI   C       A  L       G IPN VT++  I Y
Sbjct: 661 NTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINY 701



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 1/126 (0%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A ++F  ML +G  P V  +  ++   C    ++ A  L  DM K GC+PN V Y + I 
Sbjct: 189 APNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIH 248

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                N + +A++++  M  L    P   ++  +IH LC AGR+ EA   L  ++  G  
Sbjct: 249 ALCENNRVSEALQLLEDMF-LMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFS 307

Query: 391 PREYTY 396
               TY
Sbjct: 308 TDALTY 313


>gi|414876286|tpg|DAA53417.1| TPA: hypothetical protein ZEAMMB73_373649 [Zea mays]
          Length = 561

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 124/283 (43%), Gaps = 50/283 (17%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
             + M+ RG      T ++  LI  L + G++ +AL  F RM++   R  VY YN +IN 
Sbjct: 73  LFRGMADRGLDPNEVTYAI--LIHSLCKRGMMEDALCMFDRMREKGIRMTVYPYNSLING 130

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPP---------------------------------D 240
            C+  NF++AR LL +M   G    P                                 +
Sbjct: 131 YCKHNNFHQARGLLNEMVAKGLTPSPASYSPLIAGLCRKGDLASAMELHREMTRNAVSGN 190

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           VYT+T LIS +CK G            + EA  LF  M+    VP+ V +N +I+G C+ 
Sbjct: 191 VYTFTALISGFCKDG-----------NMDEATRLFHKMMESSLVPNEVTFNVMIEGYCRV 239

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
             I +A +L+D M  +G  P+  TY S I    +     KA E +  ++N N  V  S S
Sbjct: 240 GNIRKAFQLYDQMLDRGLTPDNYTYRSLISVVCLTLGAMKAKEFVADLEN-NCAVLNSFS 298

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            T ++H  C+ G    A     E++ G  +P  YTY    D L
Sbjct: 299 LTALMHGFCKEG---SAEILCKEMLAGHFLPNSYTYNCFLDYL 338



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 130/295 (44%), Gaps = 32/295 (10%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R  ++    +  ++M+R      V T   T LI    ++G ++EA   F++M +    P+
Sbjct: 168 RKGDLASAMELHREMTRNAVSGNVYT--FTALISGFCKDGNMDEATRLFHKMMESSLVPN 225

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC----------- 252
              +NV+I   CRVGN  KA  L +QM   G    PD YTY  LIS  C           
Sbjct: 226 EVTFNVMIEGYCRVGNIRKAFQLYDQMLDRGL--TPDNYTYRSLISVVCLTLGAMKAKEF 283

Query: 253 KYGMQTGCRKAIRRRIWEANHLF----------RLMLFKGFVPDVVAYNCLIDGCCKTYR 302
              ++  C       +    H F          + ML   F+P+   YNC +D       
Sbjct: 284 VADLENNCAVLNSFSLTALMHGFCKEGSAEILCKEMLAGHFLPNSYTYNCFLDYLANEGE 343

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSY 361
           +E+A  L   M  +GC+ N VT+N+ I+ + +  +I  AI++M+K  N   G  P   SY
Sbjct: 344 LEKAKVLHAAM-LEGCLANTVTFNTLIKGFCMAGQIQGAIDLMQK--NTESGFFPDCISY 400

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
           + II+ LC+ G   +A +   E++  G  P    Y ++    N   E    D GL
Sbjct: 401 STIINELCKVGDTNKAFELWNEMLYKGLKPDIVAYTILIRWCNIHGE---FDKGL 452



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 18/243 (7%)

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           I  LG++G   EA   F  M      P+   Y ++I++LC+ G    A  + ++M   G 
Sbjct: 58  IDRLGKDGRYREAEKLFRGMADRGLDPNEVTYAILIHSLCKRGMMEDALCMFDRMREKGI 117

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           R    VY Y  LI+ YCK+               +A  L   M+ KG  P   +Y+ LI 
Sbjct: 118 RMT--VYPYNSLINGYCKH-----------NNFHQARGLLNEMVAKGLTPSPASYSPLIA 164

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G C+   +  A+EL  +M +     N  T+ + I  +     +D+A  +  KM   +  V
Sbjct: 165 GLCRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKDGNMDEATRLFHKMME-SSLV 223

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK----LVCDALNAAEEPSL 411
           P   ++  +I   C  G + +A     +++D G  P  YTY+    +VC  L A +    
Sbjct: 224 PNEVTFNVMIEGYCRVGNIRKAFQLYDQMLDRGLTPDNYTYRSLISVVCLTLGAMKAKEF 283

Query: 412 LDD 414
           + D
Sbjct: 284 VAD 286



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 117/294 (39%), Gaps = 49/294 (16%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + + NN       L +M  +G     + +S + LI  L  +G +  A+     M +    
Sbjct: 131 YCKHNNFHQARGLLNEMVAKGLTP--SPASYSPLIAGLCRKGDLASAMELHREMTRNAVS 188

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            +VY +  +I+  C+ GN ++A  L  +M        P+  T+ ++I  YC+ G     R
Sbjct: 189 GNVYTFTALISGFCKDGNMDEATRLFHKMMESSL--VPNEVTFNVMIEGYCRVG---NIR 243

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN------- 314
           KA +        L+  ML +G  PD   Y  LI   C T    +A E   D+        
Sbjct: 244 KAFQ--------LYDQMLDRGLTPDNYTYRSLISVVCLTLGAMKAKEFVADLENNCAVLN 295

Query: 315 ------------KKGC-------------IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
                       K+G              +PN  TYN F+ Y +   E++KA  +   M 
Sbjct: 296 SFSLTALMHGFCKEGSAEILCKEMLAGHFLPNSYTYNCFLDYLANEGELEKAKVLHAAM- 354

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            L   +  + ++  +I   C AG++  A D + +  + G  P   +Y  + + L
Sbjct: 355 -LEGCLANTVTFNTLIKGFCMAGQIQGAIDLMQKNTESGFFPDCISYSTIINEL 407



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 27/200 (13%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEG----LVNEALATFYRMKQFRCRPDVYAYN 208
           +F+ D+    N  ++ + S+T L+    +EG    L  E LA  +        P+ Y YN
Sbjct: 282 EFVADLEN--NCAVLNSFSLTALMHGFCKEGSAEILCKEMLAGHFL-------PNSYTYN 332

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
             ++ L   G   KA+ L   M L G  C  +  T+  LI  +C  G   G    +++  
Sbjct: 333 CFLDYLANEGELEKAKVLHAAM-LEG--CLANTVTFNTLIKGFCMAGQIQGAIDLMQKNT 389

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
                        GF PD ++Y+ +I+  CK     +A EL+++M  KG  P+ V Y   
Sbjct: 390 E-----------SGFFPDCISYSTIINELCKVGDTNKAFELWNEMLYKGLKPDIVAYTIL 438

Query: 329 IRYYSVVNEIDKAIEMMRKM 348
           IR+ ++  E DK + +   M
Sbjct: 439 IRWCNIHGEFDKGLGIYSDM 458



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 77/175 (44%), Gaps = 11/175 (6%)

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQT---GCRKAIRR-----RIWEANHLFRLMLFKG 282
           +L G R    ++    L    CK G+      C   I R     R  EA  LFR M  +G
Sbjct: 22  KLRGKRMSGHIHKSFRLTGQNCKLGIVANLLACNAWIDRLGKDGRYREAEKLFRGMADRG 81

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+ V Y  LI   CK   +E AL +FD M +KG       YNS I  Y   N   +A 
Sbjct: 82  LDPNEVTYAILIHSLCKRGMMEDALCMFDRMREKGIRMTVYPYNSLINGYCKHNNFHQAR 141

Query: 343 EMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            ++ +M  +  G+ P+ +SY+P+I  LC  G +  A +   E+         YT+
Sbjct: 142 GLLNEM--VAKGLTPSPASYSPLIAGLCRKGDLASAMELHREMTRNAVSGNVYTF 194


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 121/250 (48%), Gaps = 16/250 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            LK M  +G    V   S   +I  L ++ L+ EA+     M      P+V  Y+ +++ 
Sbjct: 104 LLKKMEEKGCKPNVVVYST--IIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHG 161

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C +G  N+A  L +QM        PD  T+ IL+    K GM           I EA  
Sbjct: 162 FCNLGRSNEATSLFKQMVERNVM--PDTVTFNILVDGLSKEGM-----------ILEAQC 208

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +F  M+ KG  P+V  YN L+DG C   +++ A +LF+ M +KGC P+  +YN  I+ + 
Sbjct: 209 VFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHC 268

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
               ID+A  ++ +M +     P + +Y+ ++   C+ GR  +A+  L E+   G +P  
Sbjct: 269 KSGRIDEAKGLLAEMSH-KALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDL 327

Query: 394 YTYKLVCDAL 403
            TY +V D L
Sbjct: 328 MTYSIVLDGL 337



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 120/252 (47%), Gaps = 29/252 (11%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + L+  L  +  + +A+  F  M +    PDV  Y+ +IN LC++G+   A  LL++M
Sbjct: 49  TFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKM 108

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------------------------ 266
           E  G  C P+V  Y+ +I S CK  + T   + +                          
Sbjct: 109 EEKG--CKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLG 166

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           R  EA  LF+ M+ +  +PD V +N L+DG  K   I  A  +F+ M +KG  PN  TYN
Sbjct: 167 RSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYN 226

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           + +  Y   +++D+A ++   M  +  G  P+  SY  +I   C++GR+ EA+  LAE+ 
Sbjct: 227 ALMDGYCSQSQMDEAQKLFNIM--VRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMS 284

Query: 386 DGGSVPREYTYK 397
                P   TY 
Sbjct: 285 HKALTPDTVTYS 296



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 14/235 (5%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   L+  L +EG++ EA   F  M +    P+V  YN +++  C     ++A+ L  
Sbjct: 187 TVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFN 246

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M   G  C P V +Y ILI  +CK G           RI EA  L   M  K   PD V
Sbjct: 247 IMVRKG--CAPSVRSYNILIKGHCKSG-----------RIDEAKGLLAEMSHKALTPDTV 293

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y+ L+ G C+  R + A +L ++M   G +P+ +TY+  +        +D+A E+++ M
Sbjct: 294 TYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAM 353

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           Q  +   P    YT +I  +C  G++  AR+  + L   G  P   TY ++   L
Sbjct: 354 QE-SKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGL 407



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 18/207 (8%)

Query: 201 RPDVYAYNVVINALCRVGN--FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
           RPDVY   ++IN  C   +  F+ A  +L  M   G +  P+  T++ L++     G+ +
Sbjct: 7   RPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQ--PNHVTFSTLLN-----GLSS 59

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                 + +I +A  LF  M+  G+ PDV+ Y+ +I+G CK      A++L   M +KGC
Sbjct: 60  ------KAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGC 113

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
            PN V Y++ I        I +A+E + +M  +N G+ P   +Y+ I+H  C  GR  EA
Sbjct: 114 KPNVVVYSTIIDSLCKDKLITEAMEFLSEM--VNRGISPNVVTYSSILHGFCNLGRSNEA 171

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALN 404
                ++V+   +P   T+ ++ D L+
Sbjct: 172 TSLFKQMVERNVMPDTVTFNILVDGLS 198



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 31/249 (12%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRC 200
            R +  KGL   L +MS +     +T  +VT   L+K   ++G   +A      M+ +  
Sbjct: 271 GRIDEAKGL---LAEMSHKA----LTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGL 323

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD+  Y++V++ LC+ G+ ++A  LL+ M+    +  P+++ YTILI   C +G     
Sbjct: 324 LPDLMTYSIVLDGLCKQGHLDEAFELLKAMQES--KIEPNIFIYTILIQGMCNFG----- 376

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++  A  LF  +  KG  PDVV Y  +I G  K      A ELF DM   GC+P
Sbjct: 377 ------KLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLP 430

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N  TYN  I+ +    +   A  ++ +M  +  G    SS   ++         LE+RD 
Sbjct: 431 NSCTYNVIIQGFLRNGDTSNAGRLIEEM--VGRGFSADSSTFQMLSD-------LESRDE 481

Query: 381 LAELVDGGS 389
           +  L   GS
Sbjct: 482 IISLFMHGS 490



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 112/259 (43%), Gaps = 18/259 (6%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M R+G    V + ++  LIK   + G ++EA      M      PD   Y+ ++   C+ 
Sbjct: 248 MVRKGCAPSVRSYNI--LIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQD 305

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G    A+ LLE+M   G    PD+ TY+I++   CK G            + EA  L + 
Sbjct: 306 GRPQDAQKLLEEMRSYGLL--PDLMTYSIVLDGLCKQG-----------HLDEAFELLKA 352

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M      P++  Y  LI G C   ++E A ELF ++  KG  P+ VTY   I        
Sbjct: 353 MQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGL 412

Query: 338 IDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            ++A E+ R M    HG +P S +Y  II      G    A   + E+V  G      T+
Sbjct: 413 SNEACELFRDMAV--HGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTF 470

Query: 397 KLVCDALNAAEEPSLLDDG 415
           +++ D  +  E  SL   G
Sbjct: 471 QMLSDLESRDEIISLFMHG 489


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 125/292 (42%), Gaps = 32/292 (10%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M  +F  G   KG   F +  SRR    +    S + LI  L + G  NE    FY MK+
Sbjct: 524 MDCMFKAGEPEKGRAMFEEIKSRRF---VPDARSYSILIHGLIKAGFANETYELFYSMKE 580

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-- 255
             C  D  AYN+VI+  C+ G  NKA  LLE+M+  GF   P V TY  +I    K    
Sbjct: 581 QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFE--PTVVTYGSVIDGLAKIDRL 638

Query: 256 ------MQTGCRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAYNCL 293
                  +    K I                  RI EA  +   ++ KG  P+V  +N L
Sbjct: 639 DEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSL 698

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +D   K   I  AL  F  M +  C PN+VTY   I     V + +KA    ++MQ    
Sbjct: 699 LDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQ--KQ 756

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           G+ P++ SYT +I  L +AG + EA          G VP    Y  + + L+
Sbjct: 757 GMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLS 808



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 133/308 (43%), Gaps = 23/308 (7%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           +N+A E++ W ER  +  H   +   + +V AR  N   L   L +MS  G G  V T  
Sbjct: 78  VNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNT-- 135

Query: 172 VTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
             C+  VL   +   + E       M++F+ RP   AY  +I A   V + +    L +Q
Sbjct: 136 --CIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQ 193

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M+  G+   P V+ +T LI  + K G           R+  A  L   M       D+V 
Sbjct: 194 MQELGYE--PTVHLFTTLIRGFAKEG-----------RVDSALSLLDEMKSSSLDADIVL 240

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN  ID   K  +++ A + F ++   G  P+ VTY S I      N +D+A+EM   ++
Sbjct: 241 YNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLE 300

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
             N  VP + +Y  +I     AG+  EA   L      GS+P    Y  +   L    + 
Sbjct: 301 K-NRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCI---LTCLRKM 356

Query: 410 SLLDDGLR 417
             +D+ LR
Sbjct: 357 GKVDEALR 364



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 107/240 (44%), Gaps = 22/240 (9%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LIK     G   +    +  M    C PD+   N  ++ + + G   K R + E  E+
Sbjct: 486 TSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFE--EI 543

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              R  PD  +Y+ILI    K G              E   LF  M  +G V D  AYN 
Sbjct: 544 KSRRFVPDARSYSILIHGLIKAGFAN-----------ETYELFYSMKEQGCVLDTRAYNI 592

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI----EMMRKM 348
           +IDG CK  ++ +A +L ++M  KG  P  VTY S I   + ++ +D+A     E   K 
Sbjct: 593 VIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKR 652

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
             LN  +     Y+ +I    + GR+ EA   L EL+  G  P  YT+  + DAL  AEE
Sbjct: 653 IELNVVI-----YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEE 707



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 132/299 (44%), Gaps = 20/299 (6%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           ++ A +F+H +E       +E+T   M  V  + N +    +  + + +  N  +  T +
Sbjct: 254 VDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEK--NRRVPCTYA 310

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              +I   G  G  +EA +   R +     P V AYN ++  L ++G  ++A  + E+M+
Sbjct: 311 YNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMK 370

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
                  P++ TY ILI   C+ G +  C   +R  + +A          G  P+V   N
Sbjct: 371 KDA---APNLSTYNILIDMLCRAG-KLDCAFELRDSMQKA----------GLFPNVRTVN 416

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            ++D  CK+ +++ A  +F+ M+ K C P+ +T+ S I     V  +D A ++  KM  L
Sbjct: 417 IMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKM--L 474

Query: 352 NHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
           +    T+S  YT +I      GR  +      ++V+    P         D +  A EP
Sbjct: 475 DSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEP 533



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L +   +NEAL  F  MK+ +C P+   Y ++IN LC+V  FNKA    ++M+  G
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG 757

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P   +YT +IS   K G            I EA  LF      G VPD   YN +I
Sbjct: 758 MK--PSTISYTTMISGLAKAG-----------NIAEAGALFDRFKANGGVPDSACYNAMI 804

Query: 295 DGCCKTYRIERALELFDDMNKKG 317
           +G     R   A  LF++  ++G
Sbjct: 805 EGLSNGNRAMDAFSLFEETRRRG 827



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 13/175 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI   G+ G ++EA      + Q    P+VY +N +++AL +    N+A    + M+ 
Sbjct: 661 SSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMK- 719

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +C P+  TY ILI+  CK            R+  +A   ++ M  +G  P  ++Y  
Sbjct: 720 -ELKCTPNQVTYGILINGLCKV-----------RKFNKAFVFWQEMQKQGMKPSTISYTT 767

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           +I G  K   I  A  LFD     G +P+   YN+ I   S  N    A  +  +
Sbjct: 768 MISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEE 822


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 154/321 (47%), Gaps = 45/321 (14%)

Query: 108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARG---NNVKGLWDFLKDMSRRGNG 164
           VTL L KA++F   +E    + +N +    + ++ ARG   + V     +++D     +G
Sbjct: 167 VTL-LTKASQFGRRIE---PYAYNNL----LNLLIARGRAQDAVALFESWIQDGLYSPDG 218

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
                 S   +IK +   G   +AL    RM +F C PD   +N++++ LCR    N+  
Sbjct: 219 W-----SFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGH 273

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCR----------- 261
            LL +++  G  C P+V TYT +IS YCK G            +++G R           
Sbjct: 274 DLLRRLQRDGV-CMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLIN 332

Query: 262 ---KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
              KA+   +  A  ++R ++ +   PDVV ++ LIDG C+  +++ A+ ++ +M +   
Sbjct: 333 GYGKALD--MESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHI 390

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            PN  T++  I      N   +A+  +R++       P +  Y P+I  LC+ G+V EA 
Sbjct: 391 QPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEAN 450

Query: 379 DFLAELVDGGSVPREYTYKLV 399
             + ++ + G  P +YTY ++
Sbjct: 451 LIVTDMEEKGCHPDKYTYTIL 471



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 114/258 (44%), Gaps = 51/258 (19%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINAL---------------------------- 214
           GL++ A+    +  QF  R + YAYN ++N L                            
Sbjct: 161 GLLDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWS 220

Query: 215 --------CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
                   CRVGNF KA  L+E+M    F C PD  T+ IL+   C+            +
Sbjct: 221 FNVVIKGVCRVGNFQKALELVERMT--EFGCSPDTITHNILVDGLCR-----------AK 267

Query: 267 RIWEANHLFRLMLFKGF-VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           ++   + L R +   G  +P+VV Y  +I G CK  R+E AL +++DM + G  PN VTY
Sbjct: 268 QVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTY 327

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           N  I  Y    +++ A+ M R++  L    P   +++ +I   C  G++ +A     E+ 
Sbjct: 328 NVLINGYGKALDMESAVRMYRQLI-LRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMG 386

Query: 386 DGGSVPREYTYKLVCDAL 403
                P  YT+ ++  +L
Sbjct: 387 QHHIQPNVYTFSIIIHSL 404



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 28/231 (12%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM-ELPGFRCPPDVYTYTILISSYCKYGMQ--- 257
           P   +Y+ VI  LCR G    A  L +QM +  G+   PD   ++ +  S    G+    
Sbjct: 109 PSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYL--PDAVFFSFVAGSCTNAGLLDAA 166

Query: 258 -TGCRKAIR--RRI--WEANHLFRLMLFKG-----------------FVPDVVAYNCLID 295
            T   KA +  RRI  +  N+L  L++ +G                 + PD  ++N +I 
Sbjct: 167 VTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIK 226

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G C+    ++ALEL + M + GC P+ +T+N  +       ++++  +++R++Q     +
Sbjct: 227 GVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCM 286

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           P   +YT +I   C+AGR+ +A     ++++ G+ P   TY ++ +    A
Sbjct: 287 PNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKA 337



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 18/204 (8%)

Query: 160 RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
           RR   ++VT SS   LI      G +++A+  +  M Q   +P+VY ++++I++LC+   
Sbjct: 353 RRCPPDVVTFSS---LIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNR 409

Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279
             +A   L ++ +      P  + Y  +I   CK G           ++ EAN +   M 
Sbjct: 410 SAEALGFLRELNMRA-DIAPQTFIYNPVIDILCKGG-----------QVEEANLIVTDME 457

Query: 280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY---SVVN 336
            KG  PD   Y  LI G C   RI  A+ LF  M + GC P+++T NSFI       + N
Sbjct: 458 EKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRPDKITVNSFISCVLKAGMPN 517

Query: 337 EIDKAIEMMRKMQNLNHGVPTSSS 360
           E+D+ + +     + +  VP+  S
Sbjct: 518 EVDQIMLIASGHASASQKVPSHPS 541



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 81/200 (40%), Gaps = 12/200 (6%)

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFV 284
           +   +  P    PP   +Y+ +I+  C+ G         R R  +A  LF  M  + G++
Sbjct: 96  IFSALHSPPLSVPPSEQSYSHVITLLCRSG---------RHR--DALKLFDQMTDQSGYL 144

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           PD V ++ +   C     ++ A+ L    ++ G       YN+ +           A+ +
Sbjct: 145 PDAVFFSFVAGSCTNAGLLDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVAL 204

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
                      P   S+  +I  +C  G   +A + +  + + G  P   T+ ++ D L 
Sbjct: 205 FESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLC 264

Query: 405 AAEEPSLLDDGLRKRIRDGI 424
            A++ +   D LR+  RDG+
Sbjct: 265 RAKQVNRGHDLLRRLQRDGV 284


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 123/268 (45%), Gaps = 47/268 (17%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-- 230
           T +I  L     VN+AL  F  M     RP+V  YN +I  LC  G ++ A  LL  M  
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318

Query: 231 -------------------------------ELPGFRCPPDVYTYTILISSYCKYGMQTG 259
                                          E+      PD++TY+ LI+ +C       
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC------- 371

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
               +  R+ EA H+F LM+ K   P+VV YN LI G CK  R+E  +ELF +M+++G +
Sbjct: 372 ----MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 427

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEAR 378
            N VTYN+ I+      + D A ++ +KM  ++ GVP    +Y+ ++  LC+ G++ +A 
Sbjct: 428 GNTVTYNTLIQGLFQAGDCDMAQKIFKKM--VSDGVPPDIITYSILLDGLCKYGKLEKAL 485

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAA 406
                L      P  YTY ++ + +  A
Sbjct: 486 VVFEYLQKSKMEPDIYTYNIMIEGMCKA 513



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 120/294 (40%), Gaps = 62/294 (21%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG---------- 218
           T +   LI  L      +EA+A   RM    C+PD++ Y  V+N LC+ G          
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 244

Query: 219 -------------------------NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
                                    N N A  L  +M+  G R  P+V TY  LI   C 
Sbjct: 245 KMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIR--PNVVTYNSLIRCLCN 302

Query: 254 YGMQTGCRK----AIRRRI--------------------WEANHLFRLMLFKGFVPDVVA 289
           YG  +   +     I R+I                     EA  L+  M+ +   PD+  
Sbjct: 303 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 362

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y+ LI+G C   R++ A  +F+ M  K C PN VTYN+ I+ +     +++ +E+ R+M 
Sbjct: 363 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 422

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                V  + +Y  +I  L +AG    A+    ++V  G  P   TY ++ D L
Sbjct: 423 QRGL-VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 475



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 22/245 (8%)

Query: 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLV 185
           D F N +T   +   F +   V+   +  ++MS+RG  G  VT ++   LI+ L + G  
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT---LIQGLFQAGDC 446

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           + A   F +M      PD+  Y+++++ LC+ G   KA  + E ++    +  PD+YTY 
Sbjct: 447 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS--KMEPDIYTYN 504

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           I+I   CK G           ++ +   LF  +  KG  P+V+ Y  +I G C+    E 
Sbjct: 505 IMIEGMCKAG-----------KVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEE 553

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA--IEMMRKMQNLNHGVPTSSSYTP 363
           A  LF +M + G +PN  TYN+ IR  + + + DKA   E++++M++    V  +S+ + 
Sbjct: 554 ADALFREMKEDGTLPNSGTYNTLIR--ARLRDGDKAASAELIKEMRSCGF-VGDASTISM 610

Query: 364 IIHAL 368
           +I+ L
Sbjct: 611 VINML 615



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 131/303 (43%), Gaps = 51/303 (16%)

Query: 150 GLWD----FLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G W      L DM  R+ N  +VT S+   LI    +EG + EA   +  M +    PD+
Sbjct: 304 GRWSDASRLLSDMIERKINPNVVTFSA---LIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY-----GMQ-- 257
           + Y+ +IN  C     ++A+ + E M      C P+V TY  LI  +CK      GM+  
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 418

Query: 258 -----------TGCRKAIRRRIWEANH------LFRLMLFKGFVPDVVAYNCLIDGCCKT 300
                      T     + + +++A        +F+ M+  G  PD++ Y+ L+DG CK 
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            ++E+AL +F+ + K    P+  TYN  I       +++   ++   + +L    P    
Sbjct: 479 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL-SLKGVKPNVII 537

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
           YT +I   C  G   EA     E+ + G++P   TY  +                +R R+
Sbjct: 538 YTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTL----------------IRARL 581

Query: 421 RDG 423
           RDG
Sbjct: 582 RDG 584



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 106/231 (45%), Gaps = 18/231 (7%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           RM+  R   D+Y+YN++IN  CR      A  +L +M   G+   PD+ T + L++ YC 
Sbjct: 105 RMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYE--PDIVTLSSLLNGYCH 162

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                       +RI EA  L   M    + P+ V +N LI G     +   A+ L D M
Sbjct: 163 -----------GKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 211

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
             +GC P+  TY + +       +ID A+ +++KM+           YT II ALC    
Sbjct: 212 VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVIYTTIIDALCNYKN 270

Query: 374 VLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRI 420
           V +A +   E+ + G  P   TY    + +C+    ++   LL D + ++I
Sbjct: 271 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 321



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 18/214 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA+A   +M     +P+   +N +I+ L      ++A  L+++M   G  C PD++TY
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG--CQPDLFTY 223

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             +++  CK G            I  A  L + M       DVV Y  +ID  C    + 
Sbjct: 224 GTVVNGLCKRG-----------DIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVN 272

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYT 362
            AL LF +M+ KG  PN VTYNS IR          A  ++  M  + +N   P   +++
Sbjct: 273 DALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN---PNVVTFS 329

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +I A  + G+++EA     E++     P  +TY
Sbjct: 330 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 1/140 (0%)

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           D+ +YN LI+  C+  ++  AL +   M K G  P+ VT +S +  Y     I +A+ ++
Sbjct: 114 DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 173

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
            +M  + +  P + ++  +IH L    +  EA   +  +V  G  P  +TY  V + L  
Sbjct: 174 DQMFVMEYQ-PNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCK 232

Query: 406 AEEPSLLDDGLRKRIRDGIE 425
             +  L    L+K  +  IE
Sbjct: 233 RGDIDLALSLLKKMEKGKIE 252


>gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
           mitochondrial [Vitis vinifera]
          Length = 535

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 142/296 (47%), Gaps = 19/296 (6%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
           F+ W +    + H+  +   M  +  +      +W+ +++M R G    V+ +++T +++
Sbjct: 139 FFKWAKAQTGYRHSMNSYNSMVDILGKLKKFDLMWELVEEMDRLGG--YVSLATMTKVMR 196

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
            L       +A+  F  M++F  + D  A N +++AL +  +   A  +  + +      
Sbjct: 197 RLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEFKDSILLN 256

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
           P   +T+ +LI  +CK        K++             M   GF PDV++Y  +++  
Sbjct: 257 P---HTFNVLIHGWCKARKMDNALKSMAE-----------MKEHGFCPDVISYTSIVEAY 302

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C+     +   + ++M +KGC PN VTY   +       EI KA+E+  KM+  +  VP 
Sbjct: 303 CREKDFRKVNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKG-SSCVPD 361

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA--LNAAEEPSL 411
           +S Y+ +I+ L +AGR+ +ARD   ++   G++P   TY  +  A  +++ EE +L
Sbjct: 362 TSFYSSLIYILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDAL 417



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 117/246 (47%), Gaps = 47/246 (19%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++ AL +   MK+    PDV +Y  ++ A CR  +F K   +L +ME  G  CPP+V TY
Sbjct: 273 MDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRKVNSVLNEMEEKG--CPPNVVTY 330

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           TI++ +  K            + I +A  ++  M     VPD   Y+ LI    K  R++
Sbjct: 331 TIVMHALGK-----------GKEISKALEVYEKMKGSSCVPDTSFYSSLIYILSKAGRLK 379

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN-------------- 350
            A ++F+DM K+G IP+ +TYN+ I    + ++ + A++++ KM+               
Sbjct: 380 DARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKPDLNTYSPLL 439

Query: 351 ---------------LNHGVPTSSS-----YTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                          LNH      S     Y+ ++H LC++G++  A  F  E+V  G V
Sbjct: 440 KMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHACLFFEEMVSKGLV 499

Query: 391 PREYTY 396
           P++ T+
Sbjct: 500 PKDCTH 505


>gi|302791145|ref|XP_002977339.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
 gi|300154709|gb|EFJ21343.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
          Length = 336

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 110/226 (48%), Gaps = 19/226 (8%)

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           +G +  A+  F+ M   +  P++  YN +I+ LC     +    L+E+M   G  C PD+
Sbjct: 46  QGNLTGAIRVFHEMPD-KNLPNMVTYNSLIHGLCMTNGVDSTLLLMEEMTATG--CLPDI 102

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            TY  LI   CK G           R+ EAN LF  M  K   PDV+ Y+CLI G CK  
Sbjct: 103 NTYNTLIDGLCKTG-----------RVPEANRLFGEMKAKFCNPDVITYSCLIGGFCKLD 151

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
           RI  A  LFDDM K+  +P+ VT+ + +  Y     +D A  ++ +M   +   P   +Y
Sbjct: 152 RINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEMV-ASDCSPDVYTY 210

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGS----VPREYTYKLVCDAL 403
           T ++   C+  R++EA   L  +  GGS        + Y+++ D L
Sbjct: 211 TSLVDDFCKVKRMVEAHRVLKRMAKGGSNKNCKADMFAYRMMMDGL 256



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 17/205 (8%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           +CLI    +   +N A   F  M +    PDV  +  ++   C  G  + A  LLE+M  
Sbjct: 141 SCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEM-- 198

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF----VPDVV 288
               C PDVYTYT L+  +CK            +R+ EA+ + + M   G       D+ 
Sbjct: 199 VASDCSPDVYTYTSLVDDFCKV-----------KRMVEAHRVLKRMAKGGSNKNCKADMF 247

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           AY  ++DG C+T R+  ALEL + + + G  P    Y + IR      E+ KA+E++ +M
Sbjct: 248 AYRMMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELRKAMEVLEEM 307

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGR 373
                G P + +Y  +I  L   GR
Sbjct: 308 TLSRKGRPNAKAYKAVIQELAREGR 332


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 14/234 (5%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+ VLG+ G ++ AL  F  M + RC PDV  Y+ +I++L + G   +A +  E    
Sbjct: 777 TSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSIS 836

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C P+V  Y+ LI S+ K GM           +  A  LF  M  +   P++V YN 
Sbjct: 837 KG--CTPNVGVYSSLIDSFGKKGM-----------VDRALELFEEMQRRQCPPNIVTYNN 883

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+ G  K  R+  A +L ++M K GC+P+ VTYN  I     +  +D+A    ++M+   
Sbjct: 884 LLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKG 943

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
             VP   ++T +I +L +  ++LEA +    + + G  P   TY ++ D L  A
Sbjct: 944 I-VPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRA 996



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 124/263 (47%), Gaps = 16/263 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F   NNV G  +    M   G     +T+    ++++L + G  + A+  F ++ QFR +
Sbjct: 227 FGSTNNVSGALEIFNQMKSFGCNP--STNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQ 284

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   + + +++  R G  + A   +++M   G    P V+T+T+LI +  K G      
Sbjct: 285 PDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGI--DPGVHTFTVLIDALVKSG------ 336

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I EA   F  M      P+VV Y  L++G  K  R+E A E+F +M +  C P+
Sbjct: 337 -----NIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPD 391

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            + YN+ I       E D A  + ++M++    VP   +Y  +I  L +AGR  EA    
Sbjct: 392 AIAYNTLIDGLGKAGEADMACGLFKEMKDRGL-VPNLRTYNIMISVLGKAGRQPEAWQLF 450

Query: 382 AELVDGGSVPREYTYKLVCDALN 404
            +L + G+VP  +TY  + D L 
Sbjct: 451 HDLKEQGAVPDVFTYNTLIDVLG 473



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 94/177 (53%), Gaps = 13/177 (7%)

Query: 173  TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
            + LI   G++G+V+ AL  F  M++ +C P++  YN +++ L + G  N A  LLE+ME 
Sbjct: 847  SSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEK 906

Query: 233  PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
             G  C PD+ TY ILI    K GM           + EA   F+ M  KG VPDV+ +  
Sbjct: 907  VG--CVPDLVTYNILIDGVGKMGM-----------VDEAESYFKRMKEKGIVPDVITFTS 953

Query: 293  LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
            LI+   K  ++  A ELFD M ++G  P+ VTYN  I       ++ +A  +  +M+
Sbjct: 954  LIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMK 1010



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 128/281 (45%), Gaps = 49/281 (17%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+  L + G + EA   F  MK+  C PD  AYN +I+ L + G  + A  L ++M+ 
Sbjct: 361 TTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKD 420

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P++ TY I+IS   K G Q            EA  LF  +  +G VPDV  YN 
Sbjct: 421 RGL--VPNLRTYNIMISVLGKAGRQP-----------EAWQLFHDLKEQGAVPDVFTYNT 467

Query: 293 LIDGCCKTYRIERALELFDDMNKKG--CIPNR---------------------------- 322
           LID   K  ++++ L +  +M +KG  CI +R                            
Sbjct: 468 LIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLG 527

Query: 323 -VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            +TYN+ +  +     +D+A++++  M+  +  +PT  +YT ++  L +AGR+ EA   L
Sbjct: 528 EITYNTLMSAFIHNGHVDEAVKLLEVMKK-HECIPTVVTYTTLVDGLGKAGRLDEAVSLL 586

Query: 382 AELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRK 418
            E+   G  P   TY  +  +        E  SL D+ +RK
Sbjct: 587 REMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRK 627



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 102/220 (46%), Gaps = 14/220 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+EA      MK     PD++ Y  +++ L + G   +A  +  +M   G    PDV  Y
Sbjct: 719 VDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHE--PDVVAY 776

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T L+    K G           ++  A  +FR M  K  VPDVV Y+ LID   K  R+E
Sbjct: 777 TSLMDVLGKGG-----------KLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVE 825

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A   F++   KGC PN   Y+S I  +     +D+A+E+  +MQ      P   +Y  +
Sbjct: 826 EAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQR-RQCPPNIVTYNNL 884

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           +  L +AGR+  A   L E+   G VP   TY ++ D + 
Sbjct: 885 LSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVG 924



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 130/281 (46%), Gaps = 47/281 (16%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
             K+M  RG    + T ++  +I VLG+ G   EA   F+ +K+    PDV+ YN +I+ 
Sbjct: 414 LFKEMKDRGLVPNLRTYNI--MISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDV 471

Query: 214 LCRVGNFNKARFLLEQM----------------------------ELP--GFRCPPDVYT 243
           L + G  +K   ++++M                            E P  GF+   ++ T
Sbjct: 472 LGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEI-T 530

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           Y  L+S++   G            + EA  L  +M     +P VV Y  L+DG  K  R+
Sbjct: 531 YNTLMSAFIHNG-----------HVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRL 579

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYT 362
           + A+ L  +M K+GC P+ VTY+S +  +   ++ ++++ +  +M  +  G V   S+Y+
Sbjct: 580 DEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEM--VRKGCVADVSTYS 637

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +I+ LC++  V +A D    + + G  P    YK +  +L
Sbjct: 638 LVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSL 678



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 105/266 (39%), Gaps = 43/266 (16%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI  L + G ++EA   F  MK  RC P+V  Y  ++N L + G   +A  +   +
Sbjct: 324 TFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVF--V 381

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E+    C PD   Y  LI    K G               A  LF+ M  +G VP++  Y
Sbjct: 382 EMKENNCSPDAIAYNTLIDGLGKAGEAD-----------MACGLFKEMKDRGLVPNLRTY 430

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-- 348
           N +I    K  R   A +LF D+ ++G +P+  TYN+ I       ++DK + ++++M  
Sbjct: 431 NIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVE 490

Query: 349 ----------QNLNHGVPTSS------------------SYTPIIHALCEAGRVLEARDF 380
                      N  H                        +Y  ++ A    G V EA   
Sbjct: 491 KGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKL 550

Query: 381 LAELVDGGSVPREYTYKLVCDALNAA 406
           L  +     +P   TY  + D L  A
Sbjct: 551 LEVMKKHECIPTVVTYTTLVDGLGKA 576



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 132/284 (46%), Gaps = 27/284 (9%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF-YRMKQFR 199
           V  +G  +  +   +K+M  +G GE + +          G EG +  A  T  Y    F+
Sbjct: 471 VLGKGGQMDKVLAIIKEMVEKG-GECIISRDSNA-----GHEGTIEGADRTVEYPSLGFK 524

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
              ++  YN +++A    G+ ++A  LLE M+     C P V TYT L+    K G    
Sbjct: 525 SLGEI-TYNTLMSAFIHNGHVDEAVKLLEVMK--KHECIPTVVTYTTLVDGLGKAG---- 577

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  R+ EA  L R M  +G  P VV Y+ L+    K  + E +L LFD+M +KGC+
Sbjct: 578 -------RLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCV 630

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
            +  TY+  I      +++D+A+++  +M+    G+ P   +Y  ++ +L +  ++  A 
Sbjct: 631 ADVSTYSLVINCLCKSDDVDQALDVFGRMK--EEGMEPLLGNYKTLLSSLVKDEKIDFAL 688

Query: 379 DFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLLDDGLRKR 419
               EL +   VP  + Y ++ + L   N  +E   L D ++ +
Sbjct: 689 QIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQ 732



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 18/252 (7%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            L++M ++G    +VT SS+        +E    E+L+ F  M +  C  DV  Y++VIN
Sbjct: 585 LLREMEKQGCEPSVVTYSSLMASFYKRDQE---EESLSLFDEMVRKGCVADVSTYSLVIN 641

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+  + ++A  +  +M+  G    P +  Y  L+SS  K             +I  A 
Sbjct: 642 CLCKSDDVDQALDVFGRMKEEGME--PLLGNYKTLLSSLVK-----------DEKIDFAL 688

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F  +     VPD   YN +++G  K+ R++ A +L D M  +  +P+  TY S +   
Sbjct: 689 QIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGL 748

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
                +++A  M  KM    H  P   +YT ++  L + G++  A      +     VP 
Sbjct: 749 GKSGRLEEAFNMFTKMTEEGH-EPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPD 807

Query: 393 EYTYKLVCDALN 404
             TY  + D+L 
Sbjct: 808 VVTYSSLIDSLG 819



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 120/311 (38%), Gaps = 52/311 (16%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           L+ A  F+ W  +   + H   T   M    A       +   L  M + G+   ++   
Sbjct: 162 LHLAKCFFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGH--RISMHL 219

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           +T L++  G    V+ AL  F +MK F C P    YN V+  L + G ++ A  +  +  
Sbjct: 220 LTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGK-- 277

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
           L  FR  PD  T+ I + S+ + G           R+  A    + M+  G  P V  + 
Sbjct: 278 LGQFRIQPDAQTFRIFVHSFNRSG-----------RLDPAAEPIQEMIKSGIDPGVHTFT 326

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            LID   K+  I+ A + F+ M    C PN VT                           
Sbjct: 327 VLIDALVKSGNIDEACKFFNGMKNLRCSPNVVT--------------------------- 359

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
                    YT +++ L +AGR+ EA +   E+ +    P    Y  + D L  A E  +
Sbjct: 360 ---------YTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADM 410

Query: 412 LDDGLRKRIRD 422
              GL K ++D
Sbjct: 411 A-CGLFKEMKD 420



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 171  SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
            + T LI+ LG+   + EA   F  M++    P V  YNV+I+ L R G  ++A  +  +M
Sbjct: 950  TFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEM 1009

Query: 231  ELPGFRCPPDVYTYTIL 247
            ++ G  C PD  T  I+
Sbjct: 1010 KVKG--CMPDGITIGIM 1024


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 18/271 (6%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           TC  +     +  +      +LK M  +     VT  S   ++  L ++G+V EAL  F 
Sbjct: 190 TCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYS--GVVDGLCKDGMVFEALNLFS 247

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M     +PD++ YN +I+ LC    + +A  LL  M   G    PDV T+ ++   + K
Sbjct: 248 QMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIM--PDVQTFNVIAGRFFK 305

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            GM           I  A  +F  M+  G   DVV Y  +I   C   +++ A+E+FD M
Sbjct: 306 TGM-----------ISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLM 354

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
             KGC+PN VTY S I  +     ++KA+  + +M  +N+G+ P   +++ +I  +C+AG
Sbjct: 355 ISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEM--VNNGLDPNVVTWSTLIGGVCKAG 412

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + + A++    +   G +P   T  ++ D L
Sbjct: 413 KPVAAKELFLVMHKHGQLPNLQTCAIILDGL 443



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 123/260 (47%), Gaps = 25/260 (9%)

Query: 153 DFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           D LKDM          + S TC  +   L + G  + AL+   +M++  C  DV AY+ V
Sbjct: 177 DHLKDMGYE-------SDSYTCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGV 229

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           ++ LC+ G   +A  L  QM   G +  PD++TY  LI   C +            R  E
Sbjct: 230 VDGLCKDGMVFEALNLFSQMTGKGIQ--PDLFTYNCLIHGLCNF-----------DRWKE 276

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L   M+ KG +PDV  +N +     KT  I RA  +F  M   G   + VTY S I 
Sbjct: 277 AAPLLANMMRKGIMPDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIG 336

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
            + ++N++  A+E+   M  ++ G +P   +YT +IH  CE   + +A  FL E+V+ G 
Sbjct: 337 AHCMLNQMKDAMEVFDLM--ISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGL 394

Query: 390 VPREYTYKLVCDALNAAEEP 409
            P   T+  +   +  A +P
Sbjct: 395 DPNVVTWSTLIGGVCKAGKP 414



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 87/239 (36%), Gaps = 60/239 (25%)

Query: 172 VTCLIKVLGEEGLVNE---ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           V     ++G   ++N+   A+  F  M    C P++  Y  +I+  C   N NKA + L 
Sbjct: 328 VVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLG 387

Query: 229 QM-------------ELPGFRCP--------------------PDVYTYTILISSYCKYG 255
           +M              L G  C                     P++ T  I++    K  
Sbjct: 388 EMVNNGLDPNVVTWSTLIGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCN 447

Query: 256 MQTGCRKAIRR------------------------RIWEANHLFRLMLFKGFVPDVVAYN 291
             +      R                         ++ +A  LF  +  KG   DVV YN
Sbjct: 448 FHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLNDALELFSYLSSKGVKIDVVTYN 507

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
            +I G CK   ++ A +L   M + GC PN  TYN F++      +I K+ + +  M++
Sbjct: 508 IMIKGLCKEGLLDDAEDLLMKMEENGCPPNECTYNVFVQGLLRRYQISKSTKYLMFMKD 566



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 14/182 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G+L    +   ++  L +    +EA++ F  +++     ++  YN++++ +C  G  N 
Sbjct: 427 HGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNIILDGMCSSGKLND 486

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  L   +   G +   DV TY I+I   CK G+           + +A  L   M   G
Sbjct: 487 ALELFSYLSSKGVKI--DVVTYNIMIKGLCKEGL-----------LDDAEDLLMKMEENG 533

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+   YN  + G  + Y+I ++ +    M  KG   +  T    I Y+S  N+ ++A+
Sbjct: 534 CPPNECTYNVFVQGLLRRYQISKSTKYLMFMKDKGFQADATTTKFLINYFS-ANKENRAL 592

Query: 343 EM 344
           E+
Sbjct: 593 EV 594


>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 163/372 (43%), Gaps = 37/372 (9%)

Query: 30  AKLAASTTKTQNPFTIESVADVLKSIPRFF--FQSPRSIGRQTGFRHRTPLRQRILKKEA 87
           ++L +S T  Q+P ++ S +  +  I R    F+ P         R  T   Q+I     
Sbjct: 29  SRLFSSQTILQDPNSLSS-SQYINEISRILSDFRDPH----HDLERPLTAFSQKITPGLV 83

Query: 88  YNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNN 147
             +      LG +A+R              F+ W +R   F H++ +   +  +      
Sbjct: 84  EQVLKRCKNLGFSAHR--------------FFLWAKRLPGFEHSKESYHILVDILGSSKQ 129

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
              +WDFL DM      E +       + +      L  +A+  F++M  F  +  V   
Sbjct: 130 FPLIWDFLSDMRETRCCE-ICPEIFWLIFRAYCRANLPGDAIRAFHQMGDFGVKAGVGDV 188

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           + ++  LC+  +  +A+   +++ +      P+  TY+IL+  +   G  +         
Sbjct: 189 DQLLYVLCKRKHVKQAQEFFDKVNV---EVMPNAKTYSILMRGWGDVGDSS--------- 236

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
             EA  LF  M  +G   DVVAYN L++  CK   ++ A +LF +M   G  P+  +Y+ 
Sbjct: 237 --EARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSI 294

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
           FIR Y  VN+I  A +++ +M+  N  VP   +Y  I+  LC++ +V EA   L E+++ 
Sbjct: 295 FIRAYCEVNDIHSAFQVLDRMRRYNL-VPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIER 353

Query: 388 GSVPREYTYKLV 399
           G  P  ++Y  +
Sbjct: 354 GVSPDLWSYNAI 365



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 122/255 (47%), Gaps = 23/255 (9%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + L++  G+ G  +EA   F  M++  C  DV AYN ++ ALC+ GN ++A  L  +M
Sbjct: 221 TYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREM 280

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PD  +Y+I I +YC+              I  A  +   M     VP+V  Y
Sbjct: 281 GSNGL--APDACSYSIFIRAYCEVN-----------DIHSAFQVLDRMRRYNLVPNVFTY 327

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           NC++   CK+ +++ A +L D+M ++G  P+  +YN+   ++    E++KA+ ++ +M+ 
Sbjct: 328 NCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEK 387

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAA 406
            N  +P   +Y  ++  L   GR     D    + + G  P   TY ++    C      
Sbjct: 388 EN-CMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKL 446

Query: 407 EEPS-----LLDDGL 416
           EE       ++DDG+
Sbjct: 447 EEACKYFEMMIDDGI 461



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 14/155 (9%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +  C++K L +   V+EA      M +    PD+++YN +    C     NKA  L+ +M
Sbjct: 326 TYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRM 385

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E     C PD +TY +++    + G           R      ++  M  +GF P    Y
Sbjct: 386 EKEN--CMPDRHTYNMVLKMLLRVG-----------RFDRVTDVWGGMEERGFYPAASTY 432

Query: 291 NCLIDGCCKTY-RIERALELFDDMNKKGCIPNRVT 324
             ++ G CK   ++E A + F+ M   G  P   T
Sbjct: 433 AVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCT 467


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 142/294 (48%), Gaps = 26/294 (8%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFR 199
           ++++   ++    + KDM   G   +V  + + T LIK   + G   EAL+TF  M +  
Sbjct: 565 LYSKSGEIQVAERYFKDMLSSG---IVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKG 621

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             PD+ AY+ +I++L + G   +A  +  +    G    PDV+ Y  LIS +CK G    
Sbjct: 622 LIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTG--VVPDVFLYNSLISGFCKEG---- 675

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID--GCCKTYRIERALELFDDMNKKG 317
                   I +A+ L+  ML  G  P++V YN LI+  G CK+  +  A +LFD+M  KG
Sbjct: 676 -------DIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKG 728

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P+   Y   I        ++KA+ +  + Q     V + S++  +I + C+ G+V+EA
Sbjct: 729 ISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQ--KSVGSLSAFNSLIDSFCKHGKVIEA 786

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAE-----EPSLLDDGLRKRIRDGIEY 426
           R+   ++VD    P   TY ++ DA   AE     E   LD   R  I + + Y
Sbjct: 787 RELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTY 840



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 16/212 (7%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            MK  +  P  + Y+V+I+ LC   +  KA  +L+QM   G +  P+V+ Y  LI +Y +
Sbjct: 441 EMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVK--PNVFMYGTLIKAYVQ 498

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        R   A  L ++M+  G +PD+  YNCLI G C+  ++E A  L  DM
Sbjct: 499 -----------ESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDM 547

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAG 372
            +KG  PN  TY +FI  YS   EI  A    + M  L+ G VP +  YT +I   C+ G
Sbjct: 548 GEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDM--LSSGIVPNNVIYTILIKGHCDVG 605

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
             +EA      +++ G +P    Y  +  +L+
Sbjct: 606 NTVEALSTFKCMLEKGLIPDIRAYSAIIHSLS 637



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 17/209 (8%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M + +  PDVY Y  VI A C+VG+  K + +L +ME     C P+++TY   I   C  
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK---ECKPNLFTYNAFIGGLC-- 287

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
             QTG        + EA  + +LM+ KG  PD   Y  L+DG CK  R + A  +F+ M 
Sbjct: 288 --QTGA-------VDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMP 338

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGR 373
             G  PNR TY + I  +     I++A+ +  +M  +  G+  +  +Y  +I  + +AG 
Sbjct: 339 SSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEM--ITRGLKLNVVTYNAMIGGIAKAGE 396

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + +A     E++  G  P  +TY L+ D 
Sbjct: 397 MAKAMSLFNEMLMAGIEPDTWTYNLLIDG 425



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 16/228 (7%)

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
            C+P+++ YN  I  LC+ G  ++A  + + M   G    PD +TYT+L+  +CK     
Sbjct: 271 ECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGL--GPDGHTYTLLVDGFCK----- 323

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                 ++R  EA  +F  M   G  P+   Y  LIDG  K   IE AL + D+M  +G 
Sbjct: 324 ------QKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGL 377

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
             N VTYN+ I   +   E+ KA+ +  +M  L  G+ P + +Y  +I    ++  + +A
Sbjct: 378 KLNVVTYNAMIGGIAKAGEMAKAMSLFNEM--LMAGIEPDTWTYNLLIDGYLKSHDMAKA 435

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
            + LAE+      P  +TY ++   L  + +    ++ L + IR+G++
Sbjct: 436 CELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVK 483



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 113/254 (44%), Gaps = 18/254 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    +EG + EAL     M     + +V  YN +I  + + G   KA  L  +M +
Sbjct: 350 TALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLM 409

Query: 233 PGFRCPPDVYTYTILISSYCK-YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
            G    PD +TY +LI  Y K + M   C             L   M  +   P    Y+
Sbjct: 410 AGIE--PDTWTYNLLIDGYLKSHDMAKACE------------LLAEMKARKLTPSPFTYS 455

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            LI G C +  +++A E+ D M + G  PN   Y + I+ Y   +  + AIE+++ M  +
Sbjct: 456 VLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIM--I 513

Query: 352 NHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
            +GV P    Y  +I  LC A +V EA+  L ++ + G  P  +TY    +  + + E  
Sbjct: 514 ANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQ 573

Query: 411 LLDDGLRKRIRDGI 424
           + +   +  +  GI
Sbjct: 574 VAERYFKDMLSSGI 587



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 129/280 (46%), Gaps = 18/280 (6%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G+ +KG    L +M +     L T ++    I  L + G V+EAL     M +    PD 
Sbjct: 256 GDVIKGKM-VLSEMEKECKPNLFTYNA---FIGGLCQTGAVDEALEVKKLMMEKGLGPDG 311

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           + Y ++++  C+     +A+ + E M   G    P+ +TYT LI  + K G         
Sbjct: 312 HTYTLLVDGFCKQKRSKEAKLIFESMPSSGLN--PNRFTYTALIDGFIKEG--------- 360

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              I EA  +   M+ +G   +VV YN +I G  K   + +A+ LF++M   G  P+  T
Sbjct: 361 --NIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWT 418

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YN  I  Y   +++ KA E++ +M+      P+  +Y+ +I  LC +  + +A + L ++
Sbjct: 419 YNLLIDGYLKSHDMAKACELLAEMK-ARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQM 477

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           +  G  P  + Y  +  A        +  + L+  I +G+
Sbjct: 478 IRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGV 517



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 18/209 (8%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           + G + EA   F  M      PD Y Y ++I+   + GN  KA  L  + +    +    
Sbjct: 710 KSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQ---KSVGS 766

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           +  +  LI S+CK+G           ++ EA  LF  M+ K   P++V Y  LID   K 
Sbjct: 767 LSAFNSLIDSFCKHG-----------KVIEARELFDDMVDKKLTPNIVTYTILIDAYGKA 815

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS- 359
             +E A +LF DM  +  IPN +TY S +  Y+ +    K I + + M+    G+   + 
Sbjct: 816 EMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDME--ARGIACDAI 873

Query: 360 SYTPIIHALCEAGRVLEARDFL-AELVDG 387
           +Y  +  A C+ G+ LEA   L   LV+G
Sbjct: 874 AYGVMASAYCKEGKSLEALKLLNKSLVEG 902



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 16/194 (8%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI   G+  ++ EA   F  M+     P+   Y  ++ +  ++GN  K   L + ME 
Sbjct: 806 TILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEA 865

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C  D   Y ++ S+YCK G           +  EA  L    L +G   +   ++ 
Sbjct: 866 RGIAC--DAIAYGVMASAYCKEG-----------KSLEALKLLNKSLVEGIKLEDDVFDA 912

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS-FIRYYSVVNEIDKAIEMMRKMQNL 351
           LI   CK  +I   LEL  +M K+    +  T N+  + +Y   NE D+A +++  MQ L
Sbjct: 913 LIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNE-DEASKVLGVMQRL 971

Query: 352 NHGVPTSSSYTPII 365
              VPTS S T  I
Sbjct: 972 GW-VPTSLSLTDSI 984



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 124/289 (42%), Gaps = 31/289 (10%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFL---KDMSRRGNGELVTTSSVTCLIKVLGEEGL 184
           F H + T +E  ++  R +     W  L   +D  R+ N E+V +        VL +  +
Sbjct: 51  FDHYDDTVREFSMILKRKD-----WQILLNNEDNVRKLNPEIVCS--------VLQKSEI 97

Query: 185 VNEA-LATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
            +   L  F+     +     Y  +Y+++   LC  G  ++A  +LE+  L   R PP +
Sbjct: 98  DDSVRLQNFFHWSSSKMSTPQYLHSYSILAIRLCNSGLIHQADNMLEK--LLQTRKPP-L 154

Query: 242 YTYTILISSYCKYGMQTGCRKAI---RRRIW----EANHLFRLMLFKGFVPDVVAYNCLI 294
                L+  Y ++G        I   + R+     EA+ +F   + +GF P ++  N L+
Sbjct: 155 EILDSLVRCYREFGGSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLM 214

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
               K   +    +++  M +   +P+  TY + I+ +  V ++ K   ++ +M+     
Sbjct: 215 RDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEME--KEC 272

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P   +Y   I  LC+ G V EA +    +++ G  P  +TY L+ D  
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGF 321


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 113/232 (48%), Gaps = 16/232 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S T LI  L E G ++EAL  + RM++  C P V  Y V++ ALC  G   +A  L  +M
Sbjct: 257 SYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEM 316

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G  C P+VYTYT+LI   CK G           R+ EA  +   M+ KG  P VV +
Sbjct: 317 RERG--CEPNVYTYTVLIDYLCKEG-----------RMDEALKMLNEMVEKGVAPSVVPF 363

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI   CK   +E A+ +   M  K   PN  TYN  I  +     +D+A+ ++ KM  
Sbjct: 364 NALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVE 423

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK--LVC 400
            +   P   +Y  +IH LCE G V  A      ++  G  P ++T+   +VC
Sbjct: 424 -SKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVC 474



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 145/319 (45%), Gaps = 30/319 (9%)

Query: 130 HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEAL 189
           +NE+ C      F RG ++      L  M        V T +   LI  L E G+V+ A 
Sbjct: 398 YNELICG-----FCRGKSMDRAMALLNKMVESKLSPDVVTYNT--LIHGLCEVGVVDSAS 450

Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
             F  M +    PD + +N  +  LCR+G   +A  +LE ++    +   + + YT LI 
Sbjct: 451 RLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVK--ANEHAYTALID 508

Query: 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
            YCK G           +I  A  LF+ ML +  +P+ + +N +IDG  K  +++ A+ L
Sbjct: 509 GYCKAG-----------KIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLL 557

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
            +DM K    P   TYN  +       + D+A E++ ++ +  +  P   +YT  I A C
Sbjct: 558 VEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQ-PNVVTYTAFIKAYC 616

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG---LRKRIRDGIE- 425
             GR+ EA + + ++ + G +   + Y L+   +NA     LLD     LR+    G E 
Sbjct: 617 SQGRLEEAEEMVIKIKNEGVLLDSFIYNLL---INAYGCMGLLDSAFGVLRRMFGTGCEP 673

Query: 426 --YRFRQVMKVKPIMKHKE 442
               +  +MK   I KHK+
Sbjct: 674 SYLTYSILMKHLVIEKHKK 692



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 127/290 (43%), Gaps = 24/290 (8%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A  F+ W+ R  +F H+  T   + ++  R   ++   +    M +       +    T 
Sbjct: 69  ALNFFRWIRRHHNFPHSLATHHSLLLLLVRHRTLRAAENVRNSMIK----SCTSPHDATF 124

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP- 233
           L+ +L     +N A A      Q   +  + +YN ++  L R    ++   L ++M    
Sbjct: 125 LLNLLRR---MNTAAAAADHQHQLAFKLSLTSYNRLLMCLSRFSMVDEMISLYKEMLTDN 181

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P++ T   +++SYCK G            +  A   F  +L     PD+  Y  L
Sbjct: 182 GNSVFPNLITLNTMLNSYCKLG-----------NMAVARLFFVRILRCEPGPDLFTYTSL 230

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           + G C+   +ERA  +F  M ++    N V+Y + I       ++ +A+E   +M+  + 
Sbjct: 231 VLGYCRNDDVERACGVFCVMPRR----NAVSYTNLIHGLCEAGKLHEALEFWARMRE-DG 285

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             PT  +YT ++ ALCE+GR LEA     E+ + G  P  YTY ++ D L
Sbjct: 286 CFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYL 335



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 21/251 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T  IK    +G + EA     ++K      D + YN++INA   +G  + A  +L +M
Sbjct: 607 TYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRM 666

Query: 231 ELPGFRCPPDVYTYTIL-----ISSYCKYGMQ-TGCRKAIRR------RIWE------AN 272
              G  C P   TY+IL     I  + K G    G   ++         IW         
Sbjct: 667 F--GTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITT 724

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            LF  M   G VP++  Y+ LI+G CK  R+  A  L+  M + G  P+ + +NS +   
Sbjct: 725 VLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSC 784

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             +    +A+ ++  M   +H +    SY  +I  L E     +A      L+  G    
Sbjct: 785 CKLGMFGEAVTLLDSMMECSH-LAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYD 843

Query: 393 EYTYKLVCDAL 403
           E  +K++ D L
Sbjct: 844 EVAWKVLIDGL 854



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 28/164 (17%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           F +M +  C P++  Y+ +IN LC+VG  N A  L   M   G    P    +  L+SS 
Sbjct: 727 FEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGI--SPSEIIHNSLLSSC 784

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFK-------------------------GFVPD 286
           CK GM  G    +   + E +HL  L  +K                         G+  D
Sbjct: 785 CKLGM-FGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYD 843

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
            VA+  LIDG  KT  +++  EL + M K GC  +  TY+  ++
Sbjct: 844 EVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQ 887


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 124/261 (47%), Gaps = 17/261 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           RGN V+      + + RR    +VT    T L   L ++G V  A    + M       +
Sbjct: 440 RGNMVEAFRVHNEMVGRRVAPNVVT---YTALSDGLCKQGDVRAANELLHEMCNKGLELN 496

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           VY YN +IN LC+ GN  +A  ++ +ME  G R   DVYTYT LI + CK G        
Sbjct: 497 VYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRT--DVYTYTTLIDTLCKSG-------- 546

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
                  A+++ + ML KG  P +  YN L++G C + R+E   +L + M +K   PN V
Sbjct: 547 ---EFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVV 603

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           TYNS ++ Y +   +    E+ + M +     P  ++Y  +I   C+A  + EA  F  E
Sbjct: 604 TYNSLMKQYCIDKNMKSTTEIYKGMHS-QEVAPNENTYNILIKGHCKARNMKEALYFHQE 662

Query: 384 LVDGGSVPREYTYKLVCDALN 404
           +++ G      +Y  +   LN
Sbjct: 663 MIEKGLRLTASSYSALIRLLN 683



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 127/274 (46%), Gaps = 20/274 (7%)

Query: 154 FLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            L +M+ +G   L + ++V T +I +L  +G V++AL     M       D   +  VI+
Sbjct: 309 LLDEMAAKG---LESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVIS 365

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             C  G+   AR L E+M+  G     D  T+T LI+  C+ G            + EA+
Sbjct: 366 GFCSKGDLAAARRLFEEMQKRGLAA--DRVTHTALINGLCRAG-----------ELKEAD 412

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            + + M+ KG   DVV Y  LIDG CK   +  A  + ++M  +   PN VTY +     
Sbjct: 413 RVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGL 472

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
               ++  A E++ +M   N G+  +  +Y  +I+ LC+ G + +A   + E+   G   
Sbjct: 473 CKQGDVRAANELLHEM--CNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRT 530

Query: 392 REYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
             YTY  + D L  + E     + L++ +  GI+
Sbjct: 531 DVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIK 564



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 104/244 (42%), Gaps = 28/244 (11%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           N +T   +     +  +V+   + L +M  +G    V T     LI  L + G + +A+ 
Sbjct: 461 NVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYT--YNSLINGLCKFGNLEQAMR 518

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
               M+    R DVY Y  +I+ LC+ G F++A  +L++M   G +  P + TY +L++ 
Sbjct: 519 IMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIK--PSIATYNVLMNG 576

Query: 251 YCKYGMQTGCRK------------------------AIRRRIWEANHLFRLMLFKGFVPD 286
           +C  G   G +K                         I + +     +++ M  +   P+
Sbjct: 577 FCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPN 636

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
              YN LI G CK   ++ AL    +M +KG      +Y++ IR  +   +  +A     
Sbjct: 637 ENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFD 696

Query: 347 KMQN 350
           KM+N
Sbjct: 697 KMRN 700



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 27/221 (12%)

Query: 185 VNEALATFYRMKQFRCRPD--VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           ++EA+A F  +      PD  V ++N+++ AL   G    A    ++M       PPDV 
Sbjct: 240 LDEAIALFREL------PDKNVCSHNILLKALLSAGRLKDACQHFDEMS-----SPPDVV 288

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY  ++  YC           +R  +  A  L   M  KG   +   Y  +I   C   +
Sbjct: 289 TYGTMVHGYC-----------VRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQ 337

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SY 361
           +  AL + +DM   G   + V + + I  +    ++  A  +  +MQ    G+     ++
Sbjct: 338 VSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQ--KRGLAADRVTH 395

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           T +I+ LC AG + EA   L E+VD G      TY ++ D 
Sbjct: 396 TALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDG 436



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 96/235 (40%), Gaps = 31/235 (13%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD--VYTYTILISSY 251
           R++Q+   P   + N V++ L           L E + L  FR  PD  V ++ IL+ + 
Sbjct: 218 RLRQYGLSPSPESCNAVLSRLP----------LDEAIAL--FRELPDKNVCSHNILLKAL 265

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
              G           R+ +A   F  M      PDVV Y  ++ G C    +E A++L D
Sbjct: 266 LSAG-----------RLKDACQHFDEM---SSPPDVVTYGTMVHGYCVRGELENAVKLLD 311

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCE 370
           +M  KG   N   Y S I       ++  A+ ++  M    HGV   +  +T +I   C 
Sbjct: 312 EMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMT--MHGVALDAVVFTTVISGFCS 369

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
            G +  AR    E+   G      T+  + + L  A E    D  L++ +  G++
Sbjct: 370 KGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLD 424


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 17/239 (7%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           RG G      S   LI    + G + +A + F  M +    P+V  YN+++   CR G  
Sbjct: 619 RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEI 678

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            KA+ LL++M + G    P+  TY  +I  YCK G            + EA  LF  M  
Sbjct: 679 EKAKELLDEMSVKGLH--PNAVTYCTIIDGYCKSG-----------DLAEAFRLFDEMKL 725

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           KG VPD   Y  L+DGCC+   +ERA+ +F   NKKGC  +   +N+ I +     + + 
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITIFG-TNKKGCASSTAPFNALINWVFKFGKTEL 784

Query: 341 AIEMMRKMQNLNH---GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             E++ ++ + +    G P   +Y  +I  LC+ G +  A++   ++ +   +P   TY
Sbjct: 785 KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITY 843



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 19/244 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + T L+  L +   V++A   F  M+     PDV++Y V+IN   ++GN  KA
Sbjct: 587 GILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKA 646

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             + ++M   G    P+V  Y +L+  +C+ G            I +A  L   M  KG 
Sbjct: 647 SSIFDEMVEEGL--TPNVIIYNMLLGGFCRSG-----------EIEKAKELLDEMSVKGL 693

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+ V Y  +IDG CK+  +  A  LFD+M  KG +P+   Y + +     +N++++AI 
Sbjct: 694 HPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAIT 753

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG----SVPREYTYKLV 399
           +     N      +++ +  +I+ + + G+     + L  L+DG       P + TY ++
Sbjct: 754 IFG--TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIM 811

Query: 400 CDAL 403
            D L
Sbjct: 812 IDYL 815



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 14/185 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EA + +  M       D   Y V++N L +    + A  +  +M   G    PDV++Y
Sbjct: 573 VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI--APDVFSY 630

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            +LI+ + K G            + +A+ +F  M+ +G  P+V+ YN L+ G C++  IE
Sbjct: 631 GVLINGFSKLG-----------NMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIE 679

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +A EL D+M+ KG  PN VTY + I  Y    ++ +A  +  +M+ L   VP S  YT +
Sbjct: 680 KAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK-LKGLVPDSFVYTTL 738

Query: 365 IHALC 369
           +   C
Sbjct: 739 VDGCC 743



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 127/315 (40%), Gaps = 64/315 (20%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           ++ G ++ +K+M   G    V     T LIK   +     +A+     MK+    PD++ 
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVVI--YTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFC 489

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI-- 264
           YN +I  L +    ++AR  L +M   G +  P+ +TY   IS Y +        K +  
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLK--PNAFTYGAFISGYIEASEFASADKYVKE 547

Query: 265 ----------------------RRRIWEANHLFRLM------------------LF---- 280
                                 + ++ EA   +R M                  LF    
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607

Query: 281 -------------KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
                        KG  PDV +Y  LI+G  K   +++A  +FD+M ++G  PN + YN 
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            +  +    EI+KA E++ +M ++    P + +Y  II   C++G + EA     E+   
Sbjct: 668 LLGGFCRSGEIEKAKELLDEM-SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK 726

Query: 388 GSVPREYTYKLVCDA 402
           G VP  + Y  + D 
Sbjct: 727 GLVPDSFVYTTLVDG 741



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 108/254 (42%), Gaps = 27/254 (10%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           C I V+ +EG++ +A A F  M      P   AY  +I   CR  N  +   LL +M+  
Sbjct: 352 CCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKR 411

Query: 234 GFRCPPDVYTYTILISSYCKYG------------MQTGCRKAI------------RRRIW 269
                P  YTY  ++   C  G            + +GCR  +              R  
Sbjct: 412 NIVISP--YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFG 469

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A  + + M  +G  PD+  YN LI G  K  R++ A     +M + G  PN  TY +FI
Sbjct: 470 DAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             Y   +E   A + +++M+     +P     T +I+  C+  +V+EA      +VD G 
Sbjct: 530 SGYIEASEFASADKYVKEMRECGV-LPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGI 588

Query: 390 VPREYTYKLVCDAL 403
           +    TY ++ + L
Sbjct: 589 LGDAKTYTVLMNGL 602



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 64/255 (25%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-------- 253
           P  Y Y+V+I+ LC++     A+ LL +M+  G     D +TY++LI    K        
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSL--DNHTYSLLIDGLLKGRNADAAK 332

Query: 254 --------YGMQTG--------CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                   +G+           C  +    + +A  LF  M+  G +P   AY  LI+G 
Sbjct: 333 GLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGY 392

Query: 298 CKTYRIERALELFDDMNKK-----------------------------------GCIPNR 322
           C+   + +  EL  +M K+                                   GC PN 
Sbjct: 393 CREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           V Y + I+ +   +    A+ ++++M+    G+ P    Y  +I  L +A R+ EAR FL
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKE--QGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 382 AELVDGGSVPREYTY 396
            E+V+ G  P  +TY
Sbjct: 511 VEMVENGLKPNAFTY 525



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 19/174 (10%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P+   YN++I+ LC+ GN   A+ L  QM+       P V TYT L++ Y K G     
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLM--PTVITYTSLLNGYDKMG----- 854

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK---- 316
           R+A      E   +F   +  G  PD + Y+ +I+   K     +AL L D M  K    
Sbjct: 855 RRA------EMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVD 908

Query: 317 -GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
            GC  +  T  + +  ++ V E++ A ++M  M  L + +P S++   +I+  C
Sbjct: 909 DGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQY-IPDSATVIELINESC 961



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 13/168 (7%)

Query: 240 DVYTYTILISSYCKYG-MQTG------CRKAIRRRIWEANHLFRL---MLFKGFVPDVVA 289
           DV TY +LI ++C+ G +Q G        K  R      +   +L   M+ KG VP    
Sbjct: 220 DVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYT 279

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y+ LIDG CK  R+E A  L  +M+  G   +  TY+  I         D A  ++ +M 
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM- 338

Query: 350 NLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            ++HG+      Y   I  + + G + +A+     ++  G +P+   Y
Sbjct: 339 -VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 108/297 (36%), Gaps = 59/297 (19%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQFR 199
           F R   ++   + L +MS +G    +  ++VT    + G  + G + EA   F  MK   
Sbjct: 672 FCRSGEIEKAKELLDEMSVKG----LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727

Query: 200 CRPDVYAYNVVINALCRVGNFNKA------------------------RFLLEQMELPG- 234
             PD + Y  +++  CR+ +  +A                         F   + EL   
Sbjct: 728 LVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTE 787

Query: 235 ------------FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
                       F  P DV TY I+I   CK G            +  A  LF  M    
Sbjct: 788 VLNRLMDGSFDRFGKPNDV-TYNIMIDYLCKEG-----------NLEAAKELFHQMQNAN 835

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
            +P V+ Y  L++G  K  R      +FD+    G  P+ + Y+  I  +       KA+
Sbjct: 836 LMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895

Query: 343 EMMRKM---QNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
            ++ +M     ++ G   S S+   ++    + G +  A   +  +V    +P   T
Sbjct: 896 VLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSAT 952


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 17/239 (7%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           RG G      S   LI    + G + +A + F  M +    P+V  YN+++   CR G  
Sbjct: 619 RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEI 678

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            KA+ LL++M + G    P+  TY  +I  YCK G            + EA  LF  M  
Sbjct: 679 EKAKELLDEMSVKGLH--PNAVTYCTIIDGYCKSG-----------DLAEAFRLFDEMKL 725

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           KG VPD   Y  L+DGCC+   +ERA+ +F   NKKGC  +   +N+ I +     + + 
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITIFG-TNKKGCASSTAPFNALINWVFKFGKTEL 784

Query: 341 AIEMMRKMQNLNH---GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             E++ ++ + +    G P   +Y  +I  LC+ G +  A++   ++ +   +P   TY
Sbjct: 785 KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITY 843



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 19/244 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + T L+  L +   V++A   F  M+     PDV++Y V+IN   ++GN  KA
Sbjct: 587 GILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKA 646

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             + ++M   G    P+V  Y +L+  +C+ G            I +A  L   M  KG 
Sbjct: 647 SSIFDEMVEEGL--TPNVIIYNMLLGGFCRSG-----------EIEKAKELLDEMSVKGL 693

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+ V Y  +IDG CK+  +  A  LFD+M  KG +P+   Y + +     +N++++AI 
Sbjct: 694 HPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAIT 753

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG----SVPREYTYKLV 399
           +     N      +++ +  +I+ + + G+     + L  L+DG       P + TY ++
Sbjct: 754 IFG--TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIM 811

Query: 400 CDAL 403
            D L
Sbjct: 812 IDYL 815



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 129/315 (40%), Gaps = 64/315 (20%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           ++ G ++ +K+M   G    V     T LIK   +     +A+     MK+    PD++ 
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVVI--YTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFC 489

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY---------------------- 244
           YN +I  L +    ++AR  L +M   G +  P+ +TY                      
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLK--PNAFTYGAFISGYIEASEFASADKYVKE 547

Query: 245 -------------TILISSYCKYGMQTGCRKAIRR------------------------R 267
                        T LI+ YCK G       A R                         +
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + +A  +FR M  KG  PDV +Y  LI+G  K   +++A  +FD+M ++G  PN + YN 
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            +  +    EI+KA E++ +M ++    P + +Y  II   C++G + EA     E+   
Sbjct: 668 LLGGFCRSGEIEKAKELLDEM-SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK 726

Query: 388 GSVPREYTYKLVCDA 402
           G VP  + Y  + D 
Sbjct: 727 GLVPDSFVYTTLVDG 741



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 14/197 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    ++G V EA + +  M       D   Y V++N L +    + A  +  +M  
Sbjct: 561 TGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRG 620

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PDV++Y +LI+ + K G            + +A+ +F  M+ +G  P+V+ YN 
Sbjct: 621 KGI--APDVFSYGVLINGFSKLG-----------NMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+ G C++  IE+A EL D+M+ KG  PN VTY + I  Y    ++ +A  +  +M+ L 
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK-LK 726

Query: 353 HGVPTSSSYTPIIHALC 369
             VP S  YT ++   C
Sbjct: 727 GLVPDSFVYTTLVDGCC 743



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 109/254 (42%), Gaps = 27/254 (10%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           C I V+ +EG++ +A A F  M      P   AY  +I   CR  N  +   LL +M+  
Sbjct: 352 CCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKR 411

Query: 234 GFRCPPDVYTYTILISSYCKYG------------MQTGCRKAI------------RRRIW 269
                P  YTY  ++   C  G            + +GCR  +              R  
Sbjct: 412 NIVISP--YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFG 469

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A  + + M  +G  PD+  YN LI G  K  R++ A     +M + G  PN  TY +FI
Sbjct: 470 DAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             Y   +E   A + +++M+     +P     T +I+  C+ G+V+EA      +VD G 
Sbjct: 530 SGYIEASEFASADKYVKEMRECGV-LPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGI 588

Query: 390 VPREYTYKLVCDAL 403
           +    TY ++ + L
Sbjct: 589 LGDAKTYTVLMNGL 602



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 64/255 (25%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-------- 253
           P  Y Y+V+I+ LC++     A+ LL +M+  G     D +TY++LI    K        
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSL--DNHTYSLLIDGLLKGRNADAAK 332

Query: 254 --------YGMQTG--------CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                   +G+           C  +    + +A  LF  M+  G +P   AY  LI+G 
Sbjct: 333 GLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGY 392

Query: 298 CKTYRIERALELFDDMNKK-----------------------------------GCIPNR 322
           C+   + +  EL  +M K+                                   GC PN 
Sbjct: 393 CREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           V Y + I+ +   +    A+ ++++M+    G+ P    Y  +I  L +A R+ EAR FL
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKE--QGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 382 AELVDGGSVPREYTY 396
            E+V+ G  P  +TY
Sbjct: 511 VEMVENGLKPNAFTY 525



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 19/174 (10%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P+   YN++I+ LC+ GN   A+ L  QM+       P V TYT L++ Y K G     
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLM--PTVITYTSLLNGYDKMG----- 854

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK---- 316
           R+A      E   +F   +  G  PD + Y+ +I+   K     +AL L D M  K    
Sbjct: 855 RRA------EMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVD 908

Query: 317 -GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
            GC  +  T  + +  ++ V E++ A ++M  M  L + +P S++   +I+  C
Sbjct: 909 DGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQY-IPDSATVIELINESC 961



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 13/168 (7%)

Query: 240 DVYTYTILISSYCKYG-MQTG------CRKAIRRRIWEANHLFRL---MLFKGFVPDVVA 289
           DV TY +LI ++C+ G +Q G        K  R      +   +L   M+ KG VP    
Sbjct: 220 DVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYT 279

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y+ LIDG CK  R+E A  L  +M+  G   +  TY+  I         D A  ++ +M 
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM- 338

Query: 350 NLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            ++HG+      Y   I  + + G + +A+     ++  G +P+   Y
Sbjct: 339 -VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 108/297 (36%), Gaps = 59/297 (19%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQFR 199
           F R   ++   + L +MS +G    +  ++VT    + G  + G + EA   F  MK   
Sbjct: 672 FCRSGEIEKAKELLDEMSVKG----LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727

Query: 200 CRPDVYAYNVVINALCRVGNFNKA------------------------RFLLEQMELPG- 234
             PD + Y  +++  CR+ +  +A                         F   + EL   
Sbjct: 728 LVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTE 787

Query: 235 ------------FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
                       F  P DV TY I+I   CK G            +  A  LF  M    
Sbjct: 788 VLNRLMDGSFDRFGKPNDV-TYNIMIDYLCKEG-----------NLEAAKELFHQMQNAN 835

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
            +P V+ Y  L++G  K  R      +FD+    G  P+ + Y+  I  +       KA+
Sbjct: 836 LMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895

Query: 343 EMMRKM---QNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
            ++ +M     ++ G   S S+   ++    + G +  A   +  +V    +P   T
Sbjct: 896 VLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSAT 952


>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
          Length = 332

 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 119/268 (44%), Gaps = 37/268 (13%)

Query: 175 LIKVLGEEGLVNEALATFYRM----------KQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           L+  L  EG V EALA   RM           Q   + DV     +++ LC+ GN   A+
Sbjct: 16  LMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDRLCKDGNHINAQ 75

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR------------------- 265
            L  +M   G    P+V TY  +I S+C  G  +   + +R                   
Sbjct: 76  NLFTEMHEKGIF--PNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALIN 133

Query: 266 -----RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                R++ EA  +++ ML     P  + YN +IDG CK  R++ A  + D M  KGC P
Sbjct: 134 AFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSP 193

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + VT+++ I  Y     +D  +E+  +M      V  + +YT +IH  C+ G +  A+D 
Sbjct: 194 DVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGI-VANTVTYTTLIHGFCQVGDLDAAQDL 252

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEE 408
           L E++  G  P   T+  +   L + +E
Sbjct: 253 LNEMISCGVAPDYITFHCMLAGLCSKKE 280



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 108/231 (46%), Gaps = 23/231 (9%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR--------CPPDVYTYTI 246
           M +  CRP+V  +N ++N+LCR G   +A  L+++M   G +           DV   T 
Sbjct: 1   MVETGCRPNVVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTA 60

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           ++   CK G               A +LF  M  KG  P+V+ YNC+ID  C + R   A
Sbjct: 61  IVDRLCKDGNHIN-----------AQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDA 109

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
            +L   M +K   P+ VT+++ I  +    ++ +A E+ ++M   +   PT+ +Y  +I 
Sbjct: 110 DQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSI-FPTTITYNSMID 168

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
             C+  RV +A+  L  +   G  P   T+  +   +N   +   +D+G+ 
Sbjct: 169 GFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTL---INGYCKAKRVDNGME 216



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 119/249 (47%), Gaps = 19/249 (7%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           GN++    +   +M  +G    V T +  C+I      G  ++A      M + +  PD+
Sbjct: 69  GNHINA-QNLFTEMHEKGIFPNVLTYN--CMIDSFCHSGRWSDADQLLRHMIEKQINPDI 125

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             ++ +INA  +    ++A  + ++M    +   P   TY  +I  +CK           
Sbjct: 126 VTFSALINAFVKERKVSEAEEIYKEM--LRWSIFPTTITYNSMIDGFCK----------- 172

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           + R+ +A  +   M  KG  PDVV ++ LI+G CK  R++  +E+F +M+++G + N VT
Sbjct: 173 QDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVT 232

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAE 383
           Y + I  +  V ++D A +++ +M  ++ GV P   ++  ++  LC    + +A   L +
Sbjct: 233 YTTLIHGFCQVGDLDAAQDLLNEM--ISCGVAPDYITFHCMLAGLCSKKELRKAFAILED 290

Query: 384 LVDGGSVPR 392
           L      PR
Sbjct: 291 LQKSEVCPR 299



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 33/194 (17%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           + ++ N ++VT S+   LI    +E  V+EA   +  M ++   P    YN +I+  C+ 
Sbjct: 117 IEKQINPDIVTFSA---LINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQ 173

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY-----GMQTGCRKAIRRRIWEAN 272
              + A+ +L+ M   G  C PDV T++ LI+ YCK      GM+  C   + RR   AN
Sbjct: 174 DRVDDAKRMLDSMASKG--CSPDVVTFSTLINGYCKAKRVDNGMEIFCE--MHRRGIVAN 229

Query: 273 HLFRLMLFKGF---------------------VPDVVAYNCLIDGCCKTYRIERALELFD 311
            +    L  GF                      PD + ++C++ G C    + +A  + +
Sbjct: 230 TVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKELRKAFAILE 289

Query: 312 DMNKKGCIPNRVTY 325
           D+ K    P  + +
Sbjct: 290 DLQKSEVCPRLIFF 303


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 17/239 (7%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           RG G      S   LI    + G + +A + F  M +    P+V  YN+++   CR G  
Sbjct: 619 RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEI 678

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            KA+ LL++M + G    P+  TY  +I  YCK G            + EA  LF  M  
Sbjct: 679 EKAKELLDEMSVKGLH--PNAVTYCTIIDGYCKSG-----------DLAEAFRLFDEMKL 725

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           KG VPD   Y  L+DGCC+   +ERA+ +F   NKKGC  +   +N+ I +     + + 
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITIFG-TNKKGCASSTAPFNALINWVFKFGKTEL 784

Query: 341 AIEMMRKMQNLNH---GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             E++ ++ + +    G P   +Y  +I  LC+ G +  A++   ++ +   +P   TY
Sbjct: 785 KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITY 843



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 19/244 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + T L+  L +   V++A   F  M+     PDV++Y V+IN   ++GN  KA
Sbjct: 587 GILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKA 646

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             + ++M   G    P+V  Y +L+  +C+ G            I +A  L   M  KG 
Sbjct: 647 SSIFDEMVEEGL--TPNVIIYNMLLGGFCRSG-----------EIEKAKELLDEMSVKGL 693

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+ V Y  +IDG CK+  +  A  LFD+M  KG +P+   Y + +     +N++++AI 
Sbjct: 694 HPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAIT 753

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG----SVPREYTYKLV 399
           +     N      +++ +  +I+ + + G+     + L  L+DG       P + TY ++
Sbjct: 754 IFG--TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIM 811

Query: 400 CDAL 403
            D L
Sbjct: 812 IDYL 815



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 129/315 (40%), Gaps = 64/315 (20%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           ++ G ++ +K+M   G    V     T LIK   +     +A+     MK+    PD++ 
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVVI--YTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFC 489

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY---------------------- 244
           YN +I  L +    ++AR  L +M   G +  P+ +TY                      
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLK--PNAFTYGAFISGYIEASEFASADKYVKE 547

Query: 245 -------------TILISSYCKYGMQTGCRKAIRR------------------------R 267
                        T LI+ YCK G       A R                         +
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + +A  +FR M  KG  PDV +Y  LI+G  K   +++A  +FD+M ++G  PN + YN 
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            +  +    EI+KA E++ +M ++    P + +Y  II   C++G + EA     E+   
Sbjct: 668 LLGGFCRSGEIEKAKELLDEM-SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK 726

Query: 388 GSVPREYTYKLVCDA 402
           G VP  + Y  + D 
Sbjct: 727 GLVPDSFVYTTLVDG 741



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 14/197 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    ++G V EA + +  M       D   Y V++N L +    + A  +  +M  
Sbjct: 561 TGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRG 620

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PDV++Y +LI+ + K G            + +A+ +F  M+ +G  P+V+ YN 
Sbjct: 621 KGI--APDVFSYGVLINGFSKLG-----------NMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+ G C++  IE+A EL D+M+ KG  PN VTY + I  Y    ++ +A  +  +M+ L 
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK-LK 726

Query: 353 HGVPTSSSYTPIIHALC 369
             VP S  YT ++   C
Sbjct: 727 GLVPDSFVYTTLVDGCC 743



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 109/254 (42%), Gaps = 27/254 (10%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           C I V+ +EG++ +A A F  M      P   AY  +I   CR  N  +   LL +M+  
Sbjct: 352 CCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKR 411

Query: 234 GFRCPPDVYTYTILISSYCKYG------------MQTGCRKAI------------RRRIW 269
                P  YTY  ++   C  G            + +GCR  +              R  
Sbjct: 412 NIVISP--YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFG 469

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A  + + M  +G  PD+  YN LI G  K  R++ A     +M + G  PN  TY +FI
Sbjct: 470 DAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             Y   +E   A + +++M+     +P     T +I+  C+ G+V+EA      +VD G 
Sbjct: 530 SGYIEASEFASADKYVKEMRECGV-LPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGI 588

Query: 390 VPREYTYKLVCDAL 403
           +    TY ++ + L
Sbjct: 589 LGDAKTYTVLMNGL 602



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 64/255 (25%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-------- 253
           P  Y Y+V+I+ LC++     A+ LL +M+  G     D +TY++LI    K        
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSL--DNHTYSLLIDGLLKGRNADAAK 332

Query: 254 --------YGMQTG--------CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                   +G+           C  +    + +A  LF  M+  G +P   AY  LI+G 
Sbjct: 333 GLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGY 392

Query: 298 CKTYRIERALELFDDMNKK-----------------------------------GCIPNR 322
           C+   + +  EL  +M K+                                   GC PN 
Sbjct: 393 CREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           V Y + I+ +   +    A+ ++++M+    G+ P    Y  +I  L +A R+ EAR FL
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKE--QGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 382 AELVDGGSVPREYTY 396
            E+V+ G  P  +TY
Sbjct: 511 VEMVENGLKPNAFTY 525



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 19/174 (10%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P+   YN++I+ LC+ GN   A+ L  QM+       P V TYT L++ Y K G     
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLM--PTVITYTSLLNGYDKMG----- 854

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK---- 316
           R+A      E   +F   +  G  PD + Y+ +I+   K     +AL L D M  K    
Sbjct: 855 RRA------EMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVD 908

Query: 317 -GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
            GC  +  T  + +  ++ V E++ A ++M  M  L + +P S++   +I+  C
Sbjct: 909 DGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQY-IPDSATVIELINESC 961



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 13/168 (7%)

Query: 240 DVYTYTILISSYCKYG-MQTG------CRKAIRRRIWEANHLFRL---MLFKGFVPDVVA 289
           DV TY +LI ++C+ G +Q G        K  R      +   +L   M+ KG VP    
Sbjct: 220 DVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYT 279

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y+ LIDG CK  R+E A  L  +M+  G   +  TY+  I         D A  ++ +M 
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM- 338

Query: 350 NLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            ++HG+      Y   I  + + G + +A+     ++  G +P+   Y
Sbjct: 339 -VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 108/297 (36%), Gaps = 59/297 (19%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQFR 199
           F R   ++   + L +MS +G    +  ++VT    + G  + G + EA   F  MK   
Sbjct: 672 FCRSGEIEKAKELLDEMSVKG----LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727

Query: 200 CRPDVYAYNVVINALCRVGNFNKA------------------------RFLLEQMELPG- 234
             PD + Y  +++  CR+ +  +A                         F   + EL   
Sbjct: 728 LVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTE 787

Query: 235 ------------FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
                       F  P DV TY I+I   CK G            +  A  LF  M    
Sbjct: 788 VLNRLMDGSFDRFGKPNDV-TYNIMIDYLCKEG-----------NLEAAKELFHQMQNAN 835

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
            +P V+ Y  L++G  K  R      +FD+    G  P+ + Y+  I  +       KA+
Sbjct: 836 LMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895

Query: 343 EMMRKM---QNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
            ++ +M     ++ G   S S+   ++    + G +  A   +  +V    +P   T
Sbjct: 896 VLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSAT 952


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 152/328 (46%), Gaps = 33/328 (10%)

Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           R+  K+ + +N   +F+ W  +  +F H+  T   +            +W  +++M R  
Sbjct: 66  REVLKIDVEINVKIQFFKWAGKRRNFEHDLTTYMPLIRCLDDCGLFGEMWKMIQEMVRSP 125

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
              ++  + ++ ++K+LG+  +VN+AL+ FY++K  +C+P    YN +I  L + G+  K
Sbjct: 126 TC-VIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEK 184

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR-------------RRIW 269
              L  +M   G  C PD  TY++L+S++ K G       AIR              +I+
Sbjct: 185 IHELYHEMCNEG-DCFPDTMTYSVLVSAFVKLGRDD---YAIRLFDEMKANGLHPTAKIY 240

Query: 270 -------------EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                        +A  L + M  KG  P V  Y  LI G  K+ R+E A  +F +M K 
Sbjct: 241 TTLLAIYFKSGDEKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKD 300

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVL 375
           GC P+ V  N+ I  +     ++ A+++  +M++L    P   +Y  +I AL E+     
Sbjct: 301 GCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCA-PNVVTYNTVIKALFESKAPAS 359

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           EA  +  ++   G  P  +TY ++ D  
Sbjct: 360 EAASWFEKMKANGVTPSSFTYSILIDGF 387



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 119/266 (44%), Gaps = 17/266 (6%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           + I F  G+  K L   +++M  +G    V T   T LIK LG+ G V +A + F  M +
Sbjct: 244 LAIYFKSGDE-KAL-GLVQEMKDKGCAPTVFT--YTELIKGLGKSGRVEDAYSVFLNMLK 299

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
             C+PDV   N +IN   + G    A  L +QM     +C P+V TY  +I +  +    
Sbjct: 300 DGCKPDVVLINNLINIFGKAGRLEDALKLFDQMR--SLKCAPNVVTYNTVIKALFESKAP 357

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                       EA   F  M   G  P    Y+ LIDG CKT R+E+AL L ++M++KG
Sbjct: 358 AS----------EAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKG 407

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P    Y S I         + A E+  +++  N G  ++  Y  +I  L + GR  EA
Sbjct: 408 FPPCPAAYCSLINALGKAKRYEAANELFLELKE-NCGRSSARIYAVMIKNLGKCGRPSEA 466

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
            D   E+   G  P  Y Y  +   L
Sbjct: 467 VDLFNEMKKIGCNPDVYAYNALMSGL 492



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 113/259 (43%), Gaps = 28/259 (10%)

Query: 175 LIKVLGE-EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           +IK L E +   +EA + F +MK     P  + Y+++I+  C+     KA  LLE+M+  
Sbjct: 347 VIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEK 406

Query: 234 GFRCPPDVYTYTILISSYCK-----------YGMQTGCRKAIRR-------------RIW 269
           GF  PP    Y  LI++  K             ++  C ++  R             R  
Sbjct: 407 GF--PPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPS 464

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA  LF  M   G  PDV AYN L+ G  +   IE A      M + GC P+  ++N  +
Sbjct: 465 EAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIIL 524

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
              +     ++A EM  KM++ +   P + SY  I+ +L  +G   EA   + E+   G 
Sbjct: 525 NGLARTGRPEQATEMFMKMKD-SLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGF 583

Query: 390 VPREYTYKLVCDALNAAEE 408
                TY  + +A+   +E
Sbjct: 584 EYDHITYSSILEAVGKVDE 602



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +IK LG+ G  +EA+  F  MK+  C PDVYAYN +++ L R G   +A   L  ME  G
Sbjct: 453 MIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENG 512

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD+ ++ I+++   + G           R  +A  +F  M      PD V+YN ++
Sbjct: 513 --CTPDLNSHNIILNGLARTG-----------RPEQATEMFMKMKDSLIKPDAVSYNTIL 559

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
               ++   E A +L  +M  +G   + +TY+S +     V+E D+
Sbjct: 560 GSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGKVDEDDE 605



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG     +S   ++  L   G   +A   F +MK    +PD  +YN ++ +L R G F +
Sbjct: 511 NGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEE 570

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           A  L+ +M   GF    D  TY+ ++ +  K
Sbjct: 571 AAKLMREMGSRGFEY--DHITYSSILEAVGK 599


>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 712

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 127/268 (47%), Gaps = 24/268 (8%)

Query: 124 RFFD------FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL-VTTSSVTCLI 176
           RFFD      F H E +   M     R  N+    +FL  + +R NG + +       LI
Sbjct: 89  RFFDWVYNKGFSHKEQSFFLMLEFLGRARNLNAARNFLFSIEKRSNGCVKLQDRYFNSLI 148

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
           +  G  GL  E++  F  MK+    P V  +N +++ L + G    A  + ++M    + 
Sbjct: 149 RSYGNAGLFQESVNLFQTMKKMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMR-RTYG 207

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
             PD YT+  LIS +CK  M           + +A  +F+ M      PDVV YN +IDG
Sbjct: 208 VTPDSYTFNTLISGFCKNSM-----------VDQAFTIFKEMELYSCNPDVVTYNTIIDG 256

Query: 297 CCKTYRIERALELFDDMNKKGCI--PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            C+  +++ A  L + M KK     PN V+Y + +R Y +  EID+A+ +  +M  L  G
Sbjct: 257 LCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDEALLVFHEM--LTRG 314

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFL 381
           + P + +Y  +I  L EA R  E + FL
Sbjct: 315 LKPNAVTYNTLIKGLSEAHRYDEIKGFL 342



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 136/306 (44%), Gaps = 38/306 (12%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           + I+  RG    G+   + D  RR  G    + +   LI    +  +V++A   F  M+ 
Sbjct: 183 LSILLKRGRT--GMAHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSMVDQAFTIFKEMEL 240

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
           + C PDV  YN +I+ LCR G    A  LL  M        P++ +YT L+  YC     
Sbjct: 241 YSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYC----- 295

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                 +++ I EA  +F  ML +G  P+ V YN LI G  + +R       +D++  KG
Sbjct: 296 ------MKQEIDEALLVFHEMLTRGLKPNAVTYNTLIKGLSEAHR-------YDEI--KG 340

Query: 318 CI----------PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
            +          P+  T+N  I+ +     +D A+++ ++M N+    P S+SY+ +I  
Sbjct: 341 FLIGGDAFTTFSPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLH-PDSASYSVLIRT 399

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYR 427
           LC      +A     EL +   +  +   K +  A N   E  L  +G  K+     E  
Sbjct: 400 LCLRNEFDKAETLFNELFEKEVLLGKNECKPLAAAYNLMFE-YLCANGKAKQ----AEKV 454

Query: 428 FRQVMK 433
           FRQ+MK
Sbjct: 455 FRQLMK 460



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 83/228 (36%), Gaps = 43/228 (18%)

Query: 162 GNGELVTTSSVTC----LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           G     T S   C    LIK   + G ++ A+  F  M   +  PD  +Y+V+I  LC  
Sbjct: 344 GGDAFTTFSPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCLR 403

Query: 218 GNFNKARFLLEQM-----ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------ 266
             F+KA  L  ++      L    C P    Y ++    C  G      K  R+      
Sbjct: 404 NEFDKAETLFNELFEKEVLLGKNECKPLAAAYNLMFEYLCANGKAKQAEKVFRQLMKRGA 463

Query: 267 -----------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
                            +   A  L  LML + FVPD   Y  LIDG  K      A + 
Sbjct: 464 QDPSSYRTLITGLCREGKFKAAYELLVLMLRREFVPDPETYEVLIDGLLKIGEALLAHDT 523

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
              M +   +P   T      ++SV+ E+ K     RK  N + G+ T
Sbjct: 524 LQRMLRSSYLPVATT------FHSVLAELVK-----RKFANDSFGLLT 560


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 120/251 (47%), Gaps = 17/251 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  S   +  +L EE  +  A++ +  M++   R  V + NV+I ALC+      A F +
Sbjct: 119 TDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEI 178

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            + E+P   C PD YTY  LI+  CK G           + +EA  LF+ M  KG  P V
Sbjct: 179 FR-EMPKRGCDPDSYTYGTLINGLCKLG-----------KTFEAKELFKEMDTKGCSPSV 226

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y+CL+ G C+   ++ A+ LFD M KK   PN  TY+S +          +A+E++  
Sbjct: 227 VTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEM 286

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDAL 403
           M    H  P   +Y+ +I+ LC+ G++ EA + L  +   G  P    Y  +    C+  
Sbjct: 287 MVRKRHK-PNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIR 345

Query: 404 NAAEEPSLLDD 414
              E  + LD+
Sbjct: 346 KFQEAATYLDE 356



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 37/266 (13%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL-GEEGLVNEALATFYRMKQFR 199
           +    N +K    F K M   G  + V   S+  LIK L    G ++ A   F  M +  
Sbjct: 129 ILVEENQLKVAMSFYKYMREMGVRQSVV--SLNVLIKALCKNSGTIDAAFEIFREMPKRG 186

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG---- 255
           C PD Y Y  +IN LC++G   +A+ L ++M+  G  C P V TY+ L+   C+ G    
Sbjct: 187 CDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKG--CSPSVVTYSCLMHGLCQAGNVDE 244

Query: 256 ----MQTGCRKAIRRRIW----------------EANHLFRLMLFKGFVPDVVAYNCLID 295
                    +KAI   ++                EA  L  +M+ K   P++V Y+ LI+
Sbjct: 245 AMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLIN 304

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G CK  ++  A+E  D M  +G  P+   Y   I  +  + +  +A   + +M  L    
Sbjct: 305 GLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMV-LGQIS 363

Query: 356 PTSSSYT-------PIIHALCEAGRV 374
           P   +++        ++  LC  G +
Sbjct: 364 PNRVTWSLHVKLNNMVVQGLCTNGNL 389



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 9/184 (4%)

Query: 160 RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
           +R    +VT S+   LI  L +EG + EA+ T  RMK    +PD   Y  +IN  C +  
Sbjct: 290 KRHKPNMVTYST---LINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRK 346

Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279
           F +A   L++M L   +  P+  T+++ +       +Q  C      R ++   L+  M 
Sbjct: 347 FQEAATYLDEMVLG--QISPNRVTWSLHV-KLNNMVVQGLCTNGNLNRSFQ---LYIGMR 400

Query: 280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
            +G   D   ++ L+   CK   + +A  +FD+M   GC+P+   +++ +  +    ++ 
Sbjct: 401 TRGISIDAGTFDSLVKCFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFWDRRKVR 460

Query: 340 KAIE 343
           +A E
Sbjct: 461 EAFE 464


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 51/268 (19%)

Query: 175 LIKVLGEEGLVNEALATFYRM------KQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           LIK L   G +N AL     M       +  C+P+V  YN++++ LC+VG  ++A+ L E
Sbjct: 180 LIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFE 239

Query: 229 QME--------------LPGFRCP-------------------PDVYTYTILISSYCKYG 255
           +M+              + GF C                    PD+ T+ +LI + CK G
Sbjct: 240 EMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEG 299

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                      ++ EA  L  +M+  G VPD+V YN LI+G C    +  A ELF  M  
Sbjct: 300 -----------KVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPS 348

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
           KGC P+ ++YN  I  YS   ++++A+++  +M  L    P   +Y  ++  +  AG+V 
Sbjct: 349 KGCEPDVISYNVLINGYSKTLKVEEAMKLYNEML-LVGKRPNVITYDSLLKGIFLAGKVD 407

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           +A+   + +   G     YTY +  D L
Sbjct: 408 DAKKLFSVMKAHGIAENSYTYGIFLDGL 435



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 117/248 (47%), Gaps = 20/248 (8%)

Query: 160 RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
           RRG    + T +   LIK L  E  ++EA   F RM++  C PDV  Y  +I  LC  GN
Sbjct: 132 RRGYSPNIVTYNT--LIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGN 189

Query: 220 FNKARFLLEQM--ELPGFR--CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
            N A  L ++M  ++  +   C P+V TY I++   CK G           R  EA  LF
Sbjct: 190 INIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVG-----------REDEAKQLF 238

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             M  +G +P +++YN LI G C   + E +  L D+M  +G  P+ VT+N  I      
Sbjct: 239 EEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKE 298

Query: 336 NEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
            ++ +A +++  M  +  G VP   +Y  +I   C  G +  AR+    +   G  P   
Sbjct: 299 GKVIEAKKLLGVM--IESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVI 356

Query: 395 TYKLVCDA 402
           +Y ++ + 
Sbjct: 357 SYNVLING 364



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 135/277 (48%), Gaps = 27/277 (9%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           E  A F  + +    P++  YN +I  LC     ++A  L  +M+  G  C PDV TY  
Sbjct: 122 EGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLG--CTPDVVTYGT 179

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI   C  G       A++      N + R  +     P+V+ YN ++DG CK  R + A
Sbjct: 180 LIKGLCGTG---NINIALKLHQEMLNDISRYEI--NCKPNVITYNIIVDGLCKVGREDEA 234

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
            +LF++M  +G IP+ ++YNS I  +    + +++  ++ +M  L+ G+ P   ++  +I
Sbjct: 235 KQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEM--LDQGLQPDMVTFNVLI 292

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA------LNAAEE--PSLLDDGLR 417
             LC+ G+V+EA+  L  +++ G VP   TY  + +       LN+A E   S+   G  
Sbjct: 293 DTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCE 352

Query: 418 KRIRDGIEYR-----FRQVMKVKPIMK-HKELLKCGE 448
               D I Y      + + +KV+  MK + E+L  G+
Sbjct: 353 P---DVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK 386



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 24/245 (9%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
            AL  F+ M +    P + ++N +++ L ++ ++++   L  QM L G     D  T  I
Sbjct: 52  HALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLS--SDRCTLNI 109

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           L++  C              R+ E    F  +L +G+ P++V YN LI G C  +RI  A
Sbjct: 110 LLNCLCNV-----------NRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEA 158

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN------LNHGVPTSSS 360
             LF  M K GC P+ VTY + I+       I+ A+++ ++M N      +N   P   +
Sbjct: 159 TRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCK-PNVIT 217

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGL 416
           Y  I+  LC+ GR  EA+    E+   G +P   +Y  +    C A    E   LLD+ L
Sbjct: 218 YNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEML 277

Query: 417 RKRIR 421
            + ++
Sbjct: 278 DQGLQ 282



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 115/268 (42%), Gaps = 30/268 (11%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +LVT +S   LI+     G +N A   F  M    C PDV +YNV+IN   +     +A 
Sbjct: 319 DLVTYNS---LIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAM 375

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR----------------- 267
            L  +M L G R  P+V TY  L+      G     +K                      
Sbjct: 376 KLYNEMLLVGKR--PNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLD 433

Query: 268 -------IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  ++EA  LF  +    F  ++   NCLIDG CK  ++E A ELF+ ++ +G  P
Sbjct: 434 GLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEP 493

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N VTY   I  +    ++DKA  +++KM+  N   P   +Y  ++    E+ ++ E    
Sbjct: 494 NVVTYTIMIHGFCREGQVDKANVLIQKME-ANGCTPDIITYNTLMRGFYESNKLEEVVQL 552

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEE 408
           L  +      P   T  +V D L+  E+
Sbjct: 553 LHRMAQKDVSPDAITCSIVVDMLSKDEK 580



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 13/140 (9%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           ++ CLI  L + G +  A   F ++      P+V  Y ++I+  CR G  +KA  L+++M
Sbjct: 462 NLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKM 521

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E  G  C PD+ TY  L+  + +             ++ E   L   M  K   PD +  
Sbjct: 522 EANG--CTPDIITYNTLMRGFYE-----------SNKLEEVVQLLHRMAQKDVSPDAITC 568

Query: 291 NCLIDGCCKTYRIERALELF 310
           + ++D   K  + +  L L 
Sbjct: 569 SIVVDMLSKDEKYQECLHLL 588


>gi|297727181|ref|NP_001175954.1| Os09g0532800 [Oryza sativa Japonica Group]
 gi|255679084|dbj|BAH94682.1| Os09g0532800, partial [Oryza sativa Japonica Group]
          Length = 519

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 139/291 (47%), Gaps = 27/291 (9%)

Query: 154 FLKDMSRR-GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            L+D+S R    E +  +S   LI+     G +  +++ F+R++     P+   Y ++  
Sbjct: 147 LLRDVSTRLPLPEPLVLASHNLLIEAATRSGHLAVSISLFHRLRSLHVSPNAETYRILTQ 206

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           +LCR G  + A  LL++M   G   P D   YT ++++ C+           ++++ EA 
Sbjct: 207 SLCRRGQVHTAATLLDEMLHRGI--PADPLAYTTVLNALCR-----------KKQLREAY 253

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L  LM  +G  PD+V YN +I G C+  R   A ++F DM + GC PN VTY + +   
Sbjct: 254 RLLCLMRGRGVSPDIVHYNTVIVGVCREGRPLDACKVFGDMRESGCAPNAVTYTAVVNGL 313

Query: 333 SVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
            V    DKA   +  M  L  G +P  S    +I   C  G+V EA   +  ++D G VP
Sbjct: 314 CVNGLYDKAEAYLDDM--LGKGLLPHFSVLHSVIKGCCAVGKVNEAAGMMTRMLDLGMVP 371

Query: 392 REYTYKLVCDALNAAE---EPSLLD--DGLRKRI-----RDGIEYRFRQVM 432
              T+  V  ++ + E   E  LL    G++ R      ++ +EYR R V+
Sbjct: 372 HAETWSSVIRSVCSDEDNVEVVLLQVMKGIKHRSNINSRKEEVEYRVRNVL 422


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 16/225 (7%)

Query: 183 GLVNEA----LATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
           GLV E+    +   YR M + +   +V ++N+V+N LC+VG  N+A  ++E M++ G   
Sbjct: 129 GLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGV-- 186

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            P+V TY  LI  YCK G + G       ++++A+ + + M+ KG  P+ V YN LIDG 
Sbjct: 187 SPNVITYNTLIDGYCKMG-RIG-------KMYKADAILKEMVAKGICPNEVTYNILIDGF 238

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           CK   +  A+ +F +M ++G  PN VTYN  I       ++D+A+ +  +M + +   P 
Sbjct: 239 CKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLE-PN 297

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             ++  +I+  C+   V EA +   ++   G  P   TY  + DA
Sbjct: 298 VVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDA 342



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 133/296 (44%), Gaps = 35/296 (11%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           NE+T   +   F +  NV G      +M R+G    V T ++  LI  L  +G V+EA+A
Sbjct: 227 NEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNI--LINGLCSDGKVDEAVA 284

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
              +M      P+V  +NV+IN  C+    N+A  L   ME  G    P+  TYT LI +
Sbjct: 285 LRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGV--DPNAMTYTTLIDA 342

Query: 251 YCKYG-MQTG--------------------------CRKAIRRRIWEANHLFRLMLFKGF 283
           YCK G M+                            CRK     +  A  L   M+ K  
Sbjct: 343 YCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKG---DVKAARSLMNEMVSKKL 399

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
             DVV YN LID  CK     +A++L D+M +KG  P+ VTYN+ +  Y     +  A+ 
Sbjct: 400 SADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALI 459

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           +  +M+          ++  +I   C  GR+ +A   L E+++ G VP   TY+++
Sbjct: 460 VRTRMERKGKQANV-VTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEII 514



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 120/261 (45%), Gaps = 32/261 (12%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC---RVGNFNKARFLL 227
           S   ++  L + G +N A      MK +   P+V  YN +I+  C   R+G   KA  +L
Sbjct: 157 SFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAIL 216

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGC--------RKAIR-------------- 265
           ++M   G  CP +V TY ILI  +CK    +G         R+ +R              
Sbjct: 217 KEMVAKGI-CPNEV-TYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLC 274

Query: 266 --RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              ++ EA  L   M+     P+VV +N LI+G CK   +  A+ LF+DM K+G  PN +
Sbjct: 275 SDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAM 334

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           TY + I  Y     ++ A  +   M  ++ G+ P  S+Y  +I  LC  G V  AR  + 
Sbjct: 335 TYTTLIDAYCKDGRMEDAFALYNMM--IDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMN 392

Query: 383 ELVDGGSVPREYTYKLVCDAL 403
           E+V         TY ++ D+L
Sbjct: 393 EMVSKKLSADVVTYNILIDSL 413



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 106/220 (48%), Gaps = 18/220 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+ A+  F  M++   RP+V  YN++IN LC  G  ++A  L +QM        P+V T+
Sbjct: 244 VSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLE--PNVVTH 301

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            +LI+ +CK            + + EA +LF  M  +G  P+ + Y  LID  CK  R+E
Sbjct: 302 NVLINGFCK-----------NKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRME 350

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYT 362
            A  L++ M  +G  P   TYN  I       ++  A  +M +M  + L+  V T   Y 
Sbjct: 351 DAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVT---YN 407

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +I +LC+ G   +A   L E+ + G  P   TY  + D 
Sbjct: 408 ILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDG 447



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 45/162 (27%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
            S+  CLI  L  +G V  A +    M   +   DV  YN++I++LC+ G   KA  LL+
Sbjct: 368 VSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLD 427

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG-----------MQTGCRKA-------------I 264
           +M   G    P   TY  L+  YC+ G           M+   ++A             +
Sbjct: 428 EMFEKGLN--PSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCL 485

Query: 265 RRRIWEANHLFRLMLF-------------------KGFVPDV 287
           + R+ +AN L   ML                    KGFVPD+
Sbjct: 486 KGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFVPDI 527


>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 917

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 131/293 (44%), Gaps = 16/293 (5%)

Query: 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           GL +   + + +   F    +  TC  + I   R  ++   W  L DM  +G    VT  
Sbjct: 512 GLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFP--VTNM 569

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L+      G VN A + +  MK     PD  A+   IN LC  G    A  +   M
Sbjct: 570 AFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDM 629

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              GF   P+ + Y  LI  +CK G           ++ EA  L R M  +G +PD+   
Sbjct: 630 LRKGF--VPNNFVYNSLIGGFCKVG-----------KLNEALKLVREMNKRGLLPDIFTV 676

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N +I G CK  R++ A+E F DM + G  P+ VTYN+ I  Y    ++  A ++M KM +
Sbjct: 677 NMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSD 736

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +   P  ++Y   IH  C   ++  A   L EL+  G VP   TY  + +A+
Sbjct: 737 -SGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAV 788



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 22/255 (8%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N  + LW+ +K     G G      +    I  L   GL+ +A   F  M +    P+ +
Sbjct: 585 NMAESLWNEMK-----GRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNF 639

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            YN +I   C+VG  N+A  L+ +M   G    PD++T  ++I   CK G          
Sbjct: 640 VYNSLIGGFCKVGKLNEALKLVREMNKRGLL--PDIFTVNMIICGLCKQG---------- 687

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            R+  A   F  M   G  PD+V YN LIDG CK + +  A +L   M+  G  P+  TY
Sbjct: 688 -RMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTY 746

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE-ARDFLAEL 384
           N  I  Y  V +I++A+ ++ ++ ++   VP + +Y  +I+A+C    +L+ A    A+L
Sbjct: 747 NIRIHGYCTVRKINRAVMILEELISVGI-VPNTVTYNTMINAVCNV--ILDHAMILTAKL 803

Query: 385 VDGGSVPREYTYKLV 399
           +    VP   T  ++
Sbjct: 804 LKMAFVPNTVTVNVL 818



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 115/266 (43%), Gaps = 16/266 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +  R  +   +W    D+ R+G        +   LI     +G      A  + M +FRC
Sbjct: 262 LLIRAGDCGAVWKLFGDVVRKG--PCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRC 319

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PDVY+YN+VINA C  G  + A  LL  M   G  C P + T+  +I ++CK G     
Sbjct: 320 EPDVYSYNIVINANCLKGQSSYALHLLNLMIENG--CKPSIATFCTIIDAFCKEGNVELA 377

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
           RK            F  +   G   + + YN +I G  K   I +A  LF++M  K  +P
Sbjct: 378 RK-----------YFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVP 426

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + +T+N+ +  +    + +    ++R + +++  +  SS     +  LC AGR  EA   
Sbjct: 427 DGITFNTLVAGHYRYGKEEDGNRLLRDL-SVSGLLHDSSLCDVTVAGLCWAGRYDEAMKL 485

Query: 381 LAELVDGGSVPREYTYKLVCDALNAA 406
           L  L+  G  P    +  +  A   A
Sbjct: 486 LENLLGKGIPPSVVAFNSIIAAYGNA 511



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 117/264 (44%), Gaps = 14/264 (5%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G   +  +   +I   G  GL   A   +  M +F   P     + ++ +L R G+ +
Sbjct: 491 GKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLD 550

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A   L  M   GF  P     +T+L+  Y + G            +  A  L+  M  +
Sbjct: 551 EAWIALYDMIDKGF--PVTNMAFTVLLDGYFRIG-----------AVNMAESLWNEMKGR 597

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G  PD VA+   I+G C +  +  A ++F DM +KG +PN   YNS I  +  V ++++A
Sbjct: 598 GVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEA 657

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           ++++R+M N    +P   +   II  LC+ GR+  A +   ++   G  P   TY  + D
Sbjct: 658 LKLVREM-NKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLID 716

Query: 402 ALNAAEEPSLLDDGLRKRIRDGIE 425
               A +    DD + K    G E
Sbjct: 717 GYCKAFDVGGADDLMMKMSDSGWE 740



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 18/255 (7%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           S+++ L ++L   G        F  + +    P+ + +N++I   CR G       LL  
Sbjct: 254 SAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHV 313

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M    FRC PDVY+Y I+I++ C  G  +            A HL  LM+  G  P +  
Sbjct: 314 M--GKFRCEPDVYSYNIVINANCLKGQSS-----------YALHLLNLMIENGCKPSIAT 360

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           +  +ID  CK   +E A + FD++   G   N + YN  I  Y    +I +A  +  +M+
Sbjct: 361 FCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMR 420

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG----SVPREYTYKLVCDALNA 405
             +  VP   ++  ++      G+  +    L +L   G    S   + T   +C A   
Sbjct: 421 TKDI-VPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRY 479

Query: 406 AEEPSLLDDGLRKRI 420
            E   LL++ L K I
Sbjct: 480 DEAMKLLENLLGKGI 494



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 16/199 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            +++M++RG   L    +V  +I  L ++G +  A+ TF  M +    PD+  YN +I+ 
Sbjct: 660 LVREMNKRG--LLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDG 717

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+  +   A  L+ +M   G+   PD+ TY I I  YC             R+I  A  
Sbjct: 718 YCKAFDVGGADDLMMKMSDSGWE--PDLTTYNIRIHGYCTV-----------RKINRAVM 764

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +   ++  G VP+ V YN +I+  C    ++ A+ L   + K   +PN VT N  +  + 
Sbjct: 765 ILEELISVGIVPNTVTYNTMINAVCNVI-LDHAMILTAKLLKMAFVPNTVTVNVLLSQFC 823

Query: 334 VVNEIDKAIEMMRKMQNLN 352
                +KAI   +K+  ++
Sbjct: 824 KQGMPEKAIFWGQKLSEIH 842


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 135/287 (47%), Gaps = 45/287 (15%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFR-------CR--------------------- 201
           S V  L+ +L + GL+++A+    R++Q R       C                      
Sbjct: 135 SVVDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFDL 194

Query: 202 ---PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
              P+V+ +N+VI+ LC+ G   +AR L  +M+  G  C PDV TY  LI  Y K G   
Sbjct: 195 LPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMG--CSPDVVTYNSLIDGYGKCG--- 249

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                    + E   L   M   G   DVV YN LI+   K  R+E+A   F +M ++G 
Sbjct: 250 --------DLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGV 301

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           + N VT+++F+  +     + +A+++  +M+ +   +P   +YT ++   C+AGR+ +A 
Sbjct: 302 VANVVTFSTFVDAFCKEGLVQEAMKLFAQMR-VRGMMPNEFTYTSLVDGTCKAGRLDDAI 360

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
             L E+V  G VP   TY ++ D L    + +  D+ L    R G++
Sbjct: 361 VLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVK 407



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 148/363 (40%), Gaps = 88/363 (24%)

Query: 131 NEMTCKEMGIVFAR---GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
           N  TC  + +  AR   G  V+ L+D L          +    +   +I  L +EG + E
Sbjct: 168 NTRTCNHILLRLARNRQGGLVRRLFDLLP---------VPNVFTFNIVIDFLCKEGELVE 218

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A A F RMK   C PDV  YN +I+   + G+  +   L+ +M   G  C  DV TY  L
Sbjct: 219 ARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSG--CAADVVTYNAL 276

Query: 248 ISSYCKYG---------------------------MQTGCRKAIRRRIWEANHLFRLMLF 280
           I+ + K+G                           +   C++ +   + EA  LF  M  
Sbjct: 277 INCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGL---VQEAMKLFAQMRV 333

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN-------------- 326
           +G +P+   Y  L+DG CK  R++ A+ L D+M  +G +PN VTY               
Sbjct: 334 RGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAE 393

Query: 327 ---------------------SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
                                + I  + + N  ++A++++ +M+N    +  S  Y  +I
Sbjct: 394 ADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSL-YGTLI 452

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS--------LLDDGLR 417
             LC+  +V EA+  L ++   G  P    Y  + DAL  A + S        +LD G +
Sbjct: 453 WGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQ 512

Query: 418 KRI 420
             +
Sbjct: 513 PNV 515



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 127/270 (47%), Gaps = 18/270 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F++   ++  + +  +M R+G    V T S    +    +EGLV EA+  F +M+     
Sbjct: 280 FSKFGRMEKAYSYFGEMKRQGVVANVVTFST--FVDAFCKEGLVQEAMKLFAQMRVRGMM 337

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+ + Y  +++  C+ G  + A  LL++M   G    P+V TYT+++   CK G      
Sbjct: 338 PNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGL--VPNVVTYTVMVDGLCKEG------ 389

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA+++  LM   G   + + Y  LI G       ERAL+L + M  KG   +
Sbjct: 390 -----KVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELD 444

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
              Y + I       ++D+A  ++ KM     G+ P +  YT I+ AL +AG+  EA   
Sbjct: 445 VSLYGTLIWGLCKDQKVDEAKSLLHKMAGC--GLRPNTVIYTTIMDALFKAGKESEAVAL 502

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPS 410
           L +++D G  P   TY  + D L  A   S
Sbjct: 503 LHKILDSGFQPNVVTYCALIDGLCKAGSIS 532



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 113/252 (44%), Gaps = 18/252 (7%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           NN +   D L  M  +G    +  S    LI  L ++  V+EA +  ++M     RP+  
Sbjct: 424 NNSERALDLLNQMKNKGME--LDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTV 481

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            Y  +++AL + G  ++A  LL ++   GF+  P+V TY  LI   CK G          
Sbjct: 482 IYTTIMDALFKAGKESEAVALLHKILDSGFQ--PNVVTYCALIDGLCKAG---------- 529

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             I EA   F  M   G  P+V AY  LIDG CK   + +A+ L ++M  KG   ++V Y
Sbjct: 530 -SISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVY 588

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAEL 384
            S I  Y     +  A  +  KM  +  G+      YT  I   C    + EAR  L+E+
Sbjct: 589 TSLIDGYMKQANLQDAFALKTKM--IESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEM 646

Query: 385 VDGGSVPREYTY 396
           +  G  P +  Y
Sbjct: 647 IGTGITPDKTVY 658



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 13/177 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G ++EA++ F +M++    P+V AY  +I+  C++G+ NKA  L+ +M   G
Sbjct: 521 LIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKG 580

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                D   YT LI  Y K           +  + +A  L   M+  G   D+  Y C I
Sbjct: 581 MSL--DKVVYTSLIDGYMK-----------QANLQDAFALKTKMIESGLQLDLYCYTCFI 627

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            G C    ++ A  +  +M   G  P++  YN  IR Y  +  +++A  +  +M+++
Sbjct: 628 SGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMESV 684



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 94/230 (40%), Gaps = 14/230 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T ++  L +EG V EA      M++   + +   Y  +I+      N  +A  LL QM+ 
Sbjct: 379 TVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKN 438

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G     DV  Y  LI   CK            +++ EA  L   M   G  P+ V Y  
Sbjct: 439 KGMEL--DVSLYGTLIWGLCK-----------DQKVDEAKSLLHKMAGCGLRPNTVIYTT 485

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           ++D   K  +   A+ L   +   G  PN VTY + I        I +AI    KM+ L 
Sbjct: 486 IMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELG 545

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              P   +YT +I   C+ G + +A   + E++D G    +  Y  + D 
Sbjct: 546 LD-PNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDG 594



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 115/273 (42%), Gaps = 29/273 (10%)

Query: 123 ERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMS----------RRGNGELVTTSSV 172
           ER  D   N+M  K M +  +    +  +W   KD              G G    T   
Sbjct: 427 ERALDLL-NQMKNKGMELDVSLYGTL--IWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIY 483

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T ++  L + G  +EA+A  +++     +P+V  Y  +I+ LC+ G+ ++A     +M  
Sbjct: 484 TTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRE 543

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P+V  YT LI  +CK G            + +A HL   M+ KG   D V Y  
Sbjct: 544 LGL--DPNVQAYTALIDGFCKIG-----------SLNKAMHLMNEMIDKGMSLDKVVYTS 590

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LIDG  K   ++ A  L   M + G   +   Y  FI  +  +N + +A  ++ +M  + 
Sbjct: 591 LIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEM--IG 648

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            G+ P  + Y  +I    + G + EA     E+
Sbjct: 649 TGITPDKTVYNCLIRKYQKLGNMEEASSLQNEM 681


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/259 (31%), Positives = 125/259 (48%), Gaps = 29/259 (11%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I  L     VN+AL  F  M     RP+V  YN +I  LC  G ++ A  LL  M  
Sbjct: 243 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-- 300

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRK----AIRR--------------------RI 268
              +  P+V T++ LI ++ K G      K     I+R                    R+
Sbjct: 301 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 360

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            EA H+F LM+ K   P+VV YN LI G CK  R+E  +ELF +M+++G + N VTYN+ 
Sbjct: 361 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 420

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDG 387
           I+      + D A ++ +KM  ++ GVP    +Y+ ++  LC+ G++ +A      L   
Sbjct: 421 IQGLFQAGDCDMAQKIFKKM--VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 478

Query: 388 GSVPREYTYKLVCDALNAA 406
              P  YTY ++ + +  A
Sbjct: 479 KMEPDIYTYNIMIEGMCKA 497



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 120/292 (41%), Gaps = 58/292 (19%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI  L      +EA+A   RM    C+PD++ Y  V+N LC+ G+ + A  LL+
Sbjct: 169 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 228

Query: 229 QMELPGFRCP---------------------------------PDVYTYTILISSYCKYG 255
           +ME                                        P+V TY  LI   C YG
Sbjct: 229 KMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 288

Query: 256 MQTGCRK----AIRRRI--------------------WEANHLFRLMLFKGFVPDVVAYN 291
             +   +     I R+I                     EA  L+  M+ +   PD+  Y+
Sbjct: 289 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 348

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            LI+G C   R++ A  +F+ M  K C PN VTYN+ I+ +     +++ +E+ R+M   
Sbjct: 349 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQR 408

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              V  + +Y  +I  L +AG    A+    ++V  G  P   TY ++ D L
Sbjct: 409 GL-VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 459



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 22/245 (8%)

Query: 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLV 185
           D F N +T   +   F +   V+   +  ++MS+RG  G  VT ++   LI+ L + G  
Sbjct: 374 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT---LIQGLFQAGDC 430

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           + A   F +M      PD+  Y+++++ LC+ G   KA  + E ++    +  PD+YTY 
Sbjct: 431 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS--KMEPDIYTYN 488

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           I+I   CK G           ++ +   LF  +  KG  P+V+ Y  +I G C+    E 
Sbjct: 489 IMIEGMCKAG-----------KVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEE 537

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA--IEMMRKMQNLNHGVPTSSSYTP 363
           A  LF +M + G +PN  TYN+ IR  + + + DKA   E++++M++    V  +S+ + 
Sbjct: 538 ADALFREMKEDGTLPNSGTYNTLIR--ARLRDGDKAASAELIKEMRSCGF-VGDASTISM 594

Query: 364 IIHAL 368
           +I+ L
Sbjct: 595 VINML 599



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 131/303 (43%), Gaps = 51/303 (16%)

Query: 150 GLWD----FLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G W      L DM  R+ N  +VT S+   LI    +EG + EA   +  M +    PD+
Sbjct: 288 GRWSDASRLLSDMIERKINPNVVTFSA---LIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 344

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY-----GMQ-- 257
           + Y+ +IN  C     ++A+ + E M      C P+V TY  LI  +CK      GM+  
Sbjct: 345 FTYSSLINGFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 402

Query: 258 -----------TGCRKAIRRRIWEANH------LFRLMLFKGFVPDVVAYNCLIDGCCKT 300
                      T     + + +++A        +F+ M+  G  PD++ Y+ L+DG CK 
Sbjct: 403 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 462

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            ++E+AL +F+ + K    P+  TYN  I       +++   ++   + +L    P    
Sbjct: 463 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL-SLKGVKPNVII 521

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
           YT +I   C  G   EA     E+ + G++P   TY  +                +R R+
Sbjct: 522 YTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTL----------------IRARL 565

Query: 421 RDG 423
           RDG
Sbjct: 566 RDG 568



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 106/231 (45%), Gaps = 18/231 (7%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           RM+  R   D+Y+YN++IN  CR      A  +L +M   G+   PD+ T + L++ YC 
Sbjct: 89  RMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYE--PDIVTLSSLLNGYCH 146

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                       +RI EA  L   M    + P+ V +N LI G     +   A+ L D M
Sbjct: 147 -----------GKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 195

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
             +GC P+  TY + +       +ID A+ +++KM+           YT II ALC    
Sbjct: 196 VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVIYTTIIDALCNYKN 254

Query: 374 VLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRI 420
           V +A +   E+ + G  P   TY    + +C+    ++   LL D + ++I
Sbjct: 255 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 305



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 18/214 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA+A   +M     +P+   +N +I+ L      ++A  L+++M   G  C PD++TY
Sbjct: 150 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG--CQPDLFTY 207

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             +++  CK G            I  A  L + M       DVV Y  +ID  C    + 
Sbjct: 208 GTVVNGLCKRG-----------DIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVN 256

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYT 362
            AL LF +M+ KG  PN VTYNS IR          A  ++  M  + +N   P   +++
Sbjct: 257 DALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN---PNVVTFS 313

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +I A  + G+++EA     E++     P  +TY
Sbjct: 314 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 347



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 1/140 (0%)

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           D+ +YN LI+  C+  ++  AL +   M K G  P+ VT +S +  Y     I +A+ ++
Sbjct: 98  DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 157

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
            +M  + +  P + ++  +IH L    +  EA   +  +V  G  P  +TY  V + L  
Sbjct: 158 DQMFVMEYQ-PNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCK 216

Query: 406 AEEPSLLDDGLRKRIRDGIE 425
             +  L    L+K  +  IE
Sbjct: 217 RGDIDLALSLLKKMEKGKIE 236


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 116/214 (54%), Gaps = 14/214 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++EAL     M++     DV+ YN++ N LC++  +++A+ +L  M   G +  P+V 
Sbjct: 406 GKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVK--PNVV 463

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T+ I  YCK G            + EA  LFR M  KG VP+++ YN LID  CK  +
Sbjct: 464 TFTMFIEIYCKEG-----------NLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEK 512

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A ++  +M  KG +P+  TY+S I    +V  +D+A+++  +M+ L       ++YT
Sbjct: 513 VKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMR-LKGITRNVATYT 571

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +I  L + GR  EA     E++  G +P +  +
Sbjct: 572 SMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVF 605



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 122/275 (44%), Gaps = 35/275 (12%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           KG+ + LK M +      V T S+  LI+     G + EA   F  M++     DVY Y+
Sbjct: 269 KGVDEILKLMEKEQVVFSVATYSI--LIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYS 326

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------- 255
            +I+   R+GN  +A  L ++M        P+ +TY  LI   CK G             
Sbjct: 327 SMISWSRRLGNMKRAFALFDEMSQRDI--VPNAHTYGALIGGVCKAGQMEAAEILLLEMQ 384

Query: 256 --------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
                         M   CR   R ++ EA  L  +M  KG   DV  YN L +G CK +
Sbjct: 385 SKGVDLNLVIFNTTMDGYCR---RGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLH 441

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
           R + A  + + M +KG  PN VT+  FI  Y     + +A  + R M+     VP   +Y
Sbjct: 442 RYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGE-VPNIITY 500

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             +I A C+  +V +A    +E+++ G +P  YTY
Sbjct: 501 NTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTY 535



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 126/280 (45%), Gaps = 23/280 (8%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTS-SVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           R  N+K  +    +MS+R   ++V  + +   LI  + + G +  A      M+      
Sbjct: 334 RLGNMKRAFALFDEMSQR---DIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDL 390

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           ++  +N  ++  CR G  ++A  L   ME  G     DV+TY IL +  CK         
Sbjct: 391 NLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGIN--ADVFTYNILANGLCKL-------- 440

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               R  EA  +   M+ KG  P+VV +   I+  CK   +  A  LF DM KKG +PN 
Sbjct: 441 ---HRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNI 497

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           +TYN+ I  Y    ++ +A ++  +M  +N G+ P   +Y+ +IH  C  GRV EA    
Sbjct: 498 ITYNTLIDAYCKKEKVKQAHKIKSEM--INKGLLPDLYTYSSLIHGECIVGRVDEALKLF 555

Query: 382 AELVDGGSVPREYTYKLVCDALNA---AEEPSLLDDGLRK 418
            E+   G      TY  +   L+    A+E   L D + K
Sbjct: 556 NEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMK 595



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 15/176 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L  M  +G    V T   T  I++  +EG + EA   F  M++    P++  YN +I+A
Sbjct: 449 ILNSMVEKGVKPNVVT--FTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDA 506

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+     +A  +  +M   G    PD+YTY+ LI   C  G           R+ EA  
Sbjct: 507 YCKKEKVKQAHKIKSEMINKGL--LPDLYTYSSLIHGECIVG-----------RVDEALK 553

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           LF  M  KG   +V  Y  +I G  K  R + A +L+D+M K G IP+   + S +
Sbjct: 554 LFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLV 609



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 125/272 (45%), Gaps = 29/272 (10%)

Query: 120 HWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL 179
           H+VE+F D       C +  +     +    ++D++++      G ++   S   L+  L
Sbjct: 142 HFVEKFCDMLFR--VCSDNRLF----DETIRVYDYVEE-----KGLVIEERSCFVLLLAL 190

Query: 180 GEEGLVNEALATFYRM---KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
              G V+  +  F+RM    +F  R  V +  +VI+ LCR G   KA+ L+++M   G  
Sbjct: 191 KRCGEVDFCVRFFHRMVESNKFEIR--VQSLTLVIDVLCRRGEVEKAKELMDEMVGKGI- 247

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
             P+V+TY  L+++Y     + G            + + +LM  +  V  V  Y+ LI  
Sbjct: 248 VKPNVFTYNTLLNAYVGRKDRKG-----------VDEILKLMEKEQVVFSVATYSILIQW 296

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
              +  IE A ++F++M +K    +   Y+S I +   +  + +A  +  +M   +  VP
Sbjct: 297 YSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDI-VP 355

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            + +Y  +I  +C+AG++  A   L E+   G
Sbjct: 356 NAHTYGALIGGVCKAGQMEAAEILLLEMQSKG 387


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 121/263 (46%), Gaps = 20/263 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L T  +   L+ +  +      A   +  M + R +  VY +N++IN LC+ G   KA
Sbjct: 181 GVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKA 240

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           +  +  ME  G +  P++ TY  ++  YC  G           R+  A+ +   M  +  
Sbjct: 241 KDFVGHMETSGVK--PNIVTYNTIVHGYCSSG-----------RVEAADAILTTMKRQKI 287

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PD   Y  LI G CK  R+E A ++F++M +KG  P+ V YN+ I  +     +D A  
Sbjct: 288 EPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASA 347

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV--- 399
              +M  L  G+ PT S+Y  +IHAL    R  EA   + E+ + G  P   TY ++   
Sbjct: 348 YKDEM--LKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILING 405

Query: 400 -CDALNAAEEPSLLDDGLRKRIR 421
            C   NA +   L D+ L   I+
Sbjct: 406 YCRCANAKKAFLLHDEMLASGIK 428



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 131/292 (44%), Gaps = 18/292 (6%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           TC  +  +F + N  +  W    +M R      V T ++  +I VL +EG + +A     
Sbjct: 188 TCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNI--MINVLCKEGKLKKAKDFVG 245

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            M+    +P++  YN +++  C  G    A  +L  M+    +  PD +TY  LIS  CK
Sbjct: 246 HMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQ--KIEPDSFTYGSLISGMCK 303

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           R+ EA+ +F  M+ KG  P  V YN LIDG C    ++ A    D+M
Sbjct: 304 QG-----------RLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEM 352

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
            KKG  P   TYNS I    +    D+A  M++++Q    G+ P + +Y  +I+  C   
Sbjct: 353 LKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQ--EKGISPDAITYNILINGYCRCA 410

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
              +A     E++  G  P + TY  +   L+        DD  +K   +G+
Sbjct: 411 NAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGV 462



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 123/258 (47%), Gaps = 16/258 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T S+   LI  L  E   +EA      +++    PD   YN++IN  CR  N  KA  L 
Sbjct: 360 TMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLH 419

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M   G +  P   TYT L+    K           + R+ EA+ LF+ +  +G +PD 
Sbjct: 420 DEMLASGIK--PTKKTYTSLLHVLSK-----------KNRMKEADDLFKKITSEGVLPDA 466

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           + +N LIDG C    ++ A EL  DM++    P+ VT+N+ ++ +    ++++A E+  +
Sbjct: 467 IMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDE 526

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           M+    G+ P   S+  +I      G + +A     E++D G  P   TY  +   L   
Sbjct: 527 MK--RRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKN 584

Query: 407 EEPSLLDDGLRKRIRDGI 424
           +E  L ++ L++ +  G+
Sbjct: 585 QEGDLAEELLKEMVSKGM 602



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 85/200 (42%), Gaps = 15/200 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V ++ N +K   D  K ++    G L        LI        V  A      M + + 
Sbjct: 440 VLSKKNRMKEADDLFKKIT--SEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKV 497

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD   +N ++   CR G   +AR L ++M+  G +  PD  ++  LIS Y + G     
Sbjct: 498 PPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIK--PDHISFNTLISGYSRRG---DI 552

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
           + A R R          ML  GF P V+ YN L+ G CK    + A EL  +M  KG  P
Sbjct: 553 KDAFRVR--------NEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTP 604

Query: 321 NRVTYNSFIRYYSVVNEIDK 340
           +  TY + I   + VN  D+
Sbjct: 605 DDTTYFTLIEGIAKVNIPDE 624



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 6/146 (4%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           GF   +V ++ LI  CC   R + A E F  M +KG +P   T NS +  +  +N  + A
Sbjct: 147 GFKSSIV-FDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAA 205

Query: 342 IEMMRKMQNLNHGVPTSSSYT--PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             +  +M  L      SS YT   +I+ LC+ G++ +A+DF+  +   G  P   TY  +
Sbjct: 206 WVLYAEMFRLR---IKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTI 262

Query: 400 CDALNAAEEPSLLDDGLRKRIRDGIE 425
                ++      D  L    R  IE
Sbjct: 263 VHGYCSSGRVEAADAILTTMKRQKIE 288


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 131/292 (44%), Gaps = 45/292 (15%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +  +K+M R+G   +  TS+ + +I  L     V +A   F  MK     PDVY Y ++I
Sbjct: 273 FQLIKEMMRKGF--VPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 330

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTG 259
           ++ C+ G   +A++L E+M   G  C P V TYT LI +Y K              +  G
Sbjct: 331 DSFCKAGLIEQAQWLFEEMRSVG--CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 388

Query: 260 CR------KAIRRRIWEANHLFRLMLFKG----------------------FVPDVVAYN 291
           CR       A+   + +A ++ +                              P+VV Y 
Sbjct: 389 CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYG 448

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L+DG CK ++++ A EL D M   GC PN + Y++ I  +    +ID A E+  +M   
Sbjct: 449 ALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKC 508

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            + +P+  +YT +I  + + GR+  A   L++++     P   TY  + D L
Sbjct: 509 GY-LPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 559



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 120/277 (43%), Gaps = 26/277 (9%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G   T  + T LI    +   V +A   F+RM    CRP+   Y  +++ LC+ GN 
Sbjct: 350 RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNI 409

Query: 221 NKARFLLEQMELPG--------FRC------PPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           +KA  +  ++            F C       P+V TY  L+   CK             
Sbjct: 410 SKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK-----------AH 458

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++  A+ L   ML  G  P+ + Y+ LIDG CK  +I+ A E+F  M K G +P+  TY 
Sbjct: 459 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYT 518

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           S I        +D A++++ +M   +   P   +YT +I  LC  G   +A   L+ + +
Sbjct: 519 SLIDRMFKDGRLDLAMKVLSQMLK-DSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEE 577

Query: 387 GGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
            G  P   TY  + D L  A +  L  D   +  R G
Sbjct: 578 KGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG 614



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 16/232 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G ++ A   F +M +    P V+ Y  +I+ + + G  + A  +L QM    
Sbjct: 485 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 544

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+V TYT +I   C+ G      KA++        L  LM  KG  P+VV Y  LI
Sbjct: 545 --CTPNVVTYTAMIDGLCRIGES---EKALK--------LLSLMEEKGCSPNVVTYTALI 591

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K  +I+ +L+LF  M++KGC PN VTY   I +      +DKA  ++ +M+   + 
Sbjct: 592 DGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQ-TYW 650

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
                 Y   I    ++   + +   L E+   G+VP    Y ++ D  + A
Sbjct: 651 PKYLQGYRCAIQGFSKS--FIASLGILEEMESYGTVPIAPVYGMLIDCFSKA 700



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 25/193 (12%)

Query: 203 DVYAYNVVIN---------ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           ++ A N V+N          LC VG F+KA  L+++M   GF   PD  TY+ +I+  C 
Sbjct: 243 EMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGF--VPDTSTYSKVITFLCH 300

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        ++ +A  LF+ M   G  PDV  Y  LID  CK   IE+A  LF++M
Sbjct: 301 -----------ATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM 349

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
              GC P  VTY + I  Y    ++ +A ++  +M  ++ G  P   +Y  ++  LC+AG
Sbjct: 350 RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM--VDAGCRPNDVTYGALVDGLCKAG 407

Query: 373 RVLEARDFLAELV 385
            + +A +  A+L+
Sbjct: 408 NISKAFEVYAKLI 420



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 118/285 (41%), Gaps = 49/285 (17%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   +    +    M++   G L +  + T LI  + ++G ++ A+    +M +  C 
Sbjct: 489 FCKAGKIDSAQEVFLQMTK--CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 546

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V  Y  +I+ LCR+G   KA  LL  ME  G  C P+V TYT LI    K G      
Sbjct: 547 PNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG--CSPNVVTYTALIDGLGKAG------ 598

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA--------------- 306
                +I  +  LF  M  KG  P+ V Y  LI+  C    +++A               
Sbjct: 599 -----KIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKY 653

Query: 307 ------------------LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
                             L + ++M   G +P    Y   I  +S    ++ A+E+ ++M
Sbjct: 654 LQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEM 713

Query: 349 QNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             +   V T +  Y  +I ALC A +V EA    +E+   G VP 
Sbjct: 714 MEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPE 758



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 104/243 (42%), Gaps = 28/243 (11%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G + K L   L  M  +G    V T   T LI  LG+ G ++ +L  F +M +  C P+ 
Sbjct: 563 GESEKAL-KLLSLMEEKGCSPNVVT--YTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 619

Query: 205 YAYNVVINALCRVGNFNKARFLLEQME-------LPGFRCPPDVYTYTILIS-------- 249
             Y V+IN LC  G  +KAR LL +M+       L G+RC    ++ + + S        
Sbjct: 620 VTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEME 679

Query: 250 SYCK------YGMQTGC-RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           SY        YGM   C  KA R  I    H   + +      D   Y  LI   C   +
Sbjct: 680 SYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQ 739

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +E A  L+ +M ++G +P    +   I+    V + D+A+++      + H V    SYT
Sbjct: 740 VEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL---CYGICHEVGLLLSYT 796

Query: 363 PII 365
             I
Sbjct: 797 TQI 799



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 129/319 (40%), Gaps = 48/319 (15%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           FA     +G W    DM  R + +L  T   T +I  L E    +EA++  +RM+   C 
Sbjct: 81  FAHALCKEGRWADALDMIEREDFKL-DTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCI 139

Query: 202 PDVYAY-----------------------------------NVVINALCRVGNFNKARFL 226
           P+V  Y                                   N ++++ C   ++  A  L
Sbjct: 140 PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 199

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE-ANHLFRLMLFKGFVP 285
           L +M   G  CPP    Y I I S C      G  K     + + A  ++  ML    V 
Sbjct: 200 LNRMTTCG--CPPGYVVYNIFIGSIC------GQEKLPSPDLLDLAEKIYGEMLAANCVL 251

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           + V         C   + ++A +L  +M +KG +P+  TY+  I +     +++KA  + 
Sbjct: 252 NKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLF 311

Query: 346 RKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           ++M+ +  GV P   +YT +I + C+AG + +A+    E+   G  P   TY  +  A  
Sbjct: 312 QEMKMV--GVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 369

Query: 405 AAEEPSLLDDGLRKRIRDG 423
            A++    +D   + +  G
Sbjct: 370 KAKQVPQANDIFHRMVDAG 388



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 113/292 (38%), Gaps = 60/292 (20%)

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           K+MS   +G  +   +V C    L +EG   +AL    R + F+   D      +I+ L 
Sbjct: 64  KEMSE--SGFCMDRFTVGCFAHALCKEGRWADALDMIER-EDFKL--DTVLCTHMISGLM 118

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
               F++A   L +M      C P+V TY  L+S + K      C++ I           
Sbjct: 119 EASYFDEAMSFLHRMRCNS--CIPNVVTYRTLLSGFLKKKQLGWCKRIIN---------- 166

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI------ 329
            +M+ +G  P+   +N L+   C       A +L + M   GC P  V YN FI      
Sbjct: 167 -MMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQ 225

Query: 330 -----------------------------------RYYSVVNEIDKAIEMMRKMQNLNHG 354
                                              R    V + DKA +++++M      
Sbjct: 226 EKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGF- 284

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           VP +S+Y+ +I  LC A +V +A     E+   G  P  YTY ++ D+   A
Sbjct: 285 VPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKA 336



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 24/196 (12%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           +K F  RP    YN ++  L   G  +    + ++M   GF    D +T      + CK 
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGF--CMDRFTVGCFAHALCKE 88

Query: 255 GMQTGCRKAIRRR---------------IWEANHLFRLMLF------KGFVPDVVAYNCL 293
           G        I R                + EA++    M F         +P+VV Y  L
Sbjct: 89  GRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTL 148

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           + G  K  ++     + + M  +GC PN   +NS +  Y    +   A +++ +M     
Sbjct: 149 LSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG- 207

Query: 354 GVPTSSSYTPIIHALC 369
             P    Y   I ++C
Sbjct: 208 CPPGYVVYNIFIGSIC 223


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 128/266 (48%), Gaps = 18/266 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           F KDM   G    V T ++  +I  L +EG +  A + F +MK+    PD+  YN +I+ 
Sbjct: 43  FFKDMGAAGIKRSVFTYNI--MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDG 100

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
             ++G  ++   + EQM+     C PDV TY  LI+ +CK+            R+ +A  
Sbjct: 101 HGKLGLLDECICIFEQMK--DADCDPDVITYNALINCFCKF-----------ERMPKAFE 147

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
               M   G  P+VV Y+  ID  CK   ++ A++ F DM +    PN  TY S I    
Sbjct: 148 FLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANC 207

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               + +A++++ ++  L  G+  +  +YT ++  LCE GR+ EA +    +++ G  P 
Sbjct: 208 KAGNLAEALKLVEEI--LQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPN 265

Query: 393 EYTYKLVCDALNAAEEPSLLDDGLRK 418
           + TY  +      A+E     D L++
Sbjct: 266 QETYTALVHGFIKAKEMEYAKDILKE 291



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 18/242 (7%)

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           ++ EA   F +M++FR  P   + N +++ L +VG  + +R   + M   G +    V+T
Sbjct: 1   MLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIK--RSVFT 58

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           Y I+I   CK G            +  A  LF  M   GF PD+V YN LIDG  K   +
Sbjct: 59  YNIMIDYLCKEG-----------DLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLL 107

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           +  + +F+ M    C P+ +TYN+ I  +     + KA E + +M+  N   P   +Y+ 
Sbjct: 108 DECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKA-NGLKPNVVTYST 166

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKR 419
            I A C+ G + EA  F  ++      P E+TY  +    C A N AE   L+++ L+  
Sbjct: 167 FIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAG 226

Query: 420 IR 421
           I+
Sbjct: 227 IK 228



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 132/283 (46%), Gaps = 40/283 (14%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           ++VT +S   LI   G+ GL++E +  F +MK   C PDV  YN +IN  C+     KA 
Sbjct: 90  DIVTYNS---LIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAF 146

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR-----RRI----------- 268
             L +M+  G +  P+V TY+  I ++CK GM    ++AI+     RR+           
Sbjct: 147 EFLHEMKANGLK--PNVVTYSTFIDAFCKEGM---LQEAIKFFVDMRRVALTPNEFTYTS 201

Query: 269 -----------WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                       EA  L   +L  G   +VV Y  L+DG C+  R++ A E+F  M   G
Sbjct: 202 LIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAG 261

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             PN+ TY + +  +    E++ A +++++M+      P    Y  I+  LC   R+ EA
Sbjct: 262 VAPNQETYTALVHGFIKAKEMEYAKDILKEMKE-KCIKPDLLLYGTILWGLCNESRLEEA 320

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGL 416
           +  + E+ + G       Y  + DA      A E  +LL++ L
Sbjct: 321 KLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEML 363



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 22/238 (9%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           ++FL +M   G    V T S    I    +EG++ EA+  F  M++    P+ + Y  +I
Sbjct: 146 FEFLHEMKANGLKPNVVTYST--FIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLI 203

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           +A C+ GN  +A  L+E++   G +   +V TYT L+   C+ G           R+ EA
Sbjct: 204 DANCKAGNLAEALKLVEEILQAGIKL--NVVTYTALLDGLCEEG-----------RMKEA 250

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +FR ML  G  P+   Y  L+ G  K   +E A ++  +M +K   P+ + Y + +  
Sbjct: 251 EEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL-- 308

Query: 332 YSVVNE--IDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVD 386
           + + NE  +++A  ++ +++    G+ T++  YT ++ A  ++G+  EA   L E++D
Sbjct: 309 WGLCNESRLEEAKLLIGEIK--ESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD 364



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 29/229 (12%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            MK+   +PD+  Y  ++  LC      +A+ L+ +++  G     +   YT L+ +Y K
Sbjct: 291 EMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGIN--TNAVIYTTLMDAYFK 348

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G  T           EA  L   ML             L+DG CK    E A +LFD+M
Sbjct: 349 SGQAT-----------EALTLLEEMLD------------LVDGLCKNNCFEVAKKLFDEM 385

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
             KG +P+++ Y + I        + +A+ +  +M  +   +   + YT +I  L  +G+
Sbjct: 386 LDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHA-YTALIWGLSHSGQ 444

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCD---ALNAAEEPSLLDDGLRKR 419
           V +AR+ L E++  G +P E  Y  +     AL   +E   L + + KR
Sbjct: 445 VQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKR 493



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 13/118 (11%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD  AY  +I+   + GN  +A  L ++M   G     D++ YT LI      G      
Sbjct: 392 PDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMEL--DLHAYTALIWGLSHSG------ 443

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                ++ +A +L   M+ KG +PD V Y CLI       +++ ALEL ++M K+G I
Sbjct: 444 -----QVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMI 496


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 122/271 (45%), Gaps = 30/271 (11%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           S  GNG +   S    LI   G+ G+++EA+  F +M++    PD + Y  VI A  R+G
Sbjct: 392 SMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMG 451

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------------ 266
               A     QM   G +  PD   Y  LI  +C +G     ++ I              
Sbjct: 452 RLADAMDKFNQMIAMGLK--PDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTV 509

Query: 267 -------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        R+ EA  +F L++  G  PDV+ +N LIDG     ++E+A  + D M
Sbjct: 510 FFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAM 569

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
              G  P+ VTY++ +  Y     ID  + + R+M  L+ GV PT+ +Y  I+H L   G
Sbjct: 570 ISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREM--LSKGVKPTTITYGIILHGLFNDG 627

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           R + A+    E+++ G+     T  ++   L
Sbjct: 628 RTVGAKKMCHEMIESGTTMDISTCGIILGGL 658



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 110/253 (43%), Gaps = 16/253 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D L  M ++  G      S   +I     EG V++A   F+ M Q    PDV  Y+  I+
Sbjct: 211 DLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYID 270

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EA 271
           ALC+    +KA  +L QM   GF   PD  TY  +I  Y   G             W E 
Sbjct: 271 ALCKARAMDKAELVLRQMISNGFE--PDKVTYNCMIHGYSILGQ------------WKET 316

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +FR M  +G +PD+   N  +   CK  + + A E FD M  KG  P+ VTY+  +  
Sbjct: 317 AGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHG 376

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           Y+    +   + +   M+  N  V   S Y  +I A  + G + EA     ++ + G +P
Sbjct: 377 YAAEGYVVDMLNLFNSMEG-NGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMP 435

Query: 392 REYTYKLVCDALN 404
             +TY  V  A +
Sbjct: 436 DAWTYGTVIAAFS 448



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 16/210 (7%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
            +RM +    PD  +Y+ V+ +LC      +A  LL  M      C P+V +Y  +I  +
Sbjct: 178 LHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGF 237

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
            + G            + +A +LF  M+ +G VPDVV Y+  ID  CK   +++A  +  
Sbjct: 238 FREG-----------EVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLR 286

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALC 369
            M   G  P++VTYN  I  YS++ +  +   M R+M  + L   + T +SY   + +LC
Sbjct: 287 QMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSY---MSSLC 343

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           + G+  EA +F   +   G  P   TY ++
Sbjct: 344 KHGKSKEAAEFFDSMAAKGHKPDLVTYSVL 373



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 116/265 (43%), Gaps = 23/265 (8%)

Query: 144 RGNNVKGLW----DFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQ 197
            G ++ G W       ++M+RRG    +     TC   +  L + G   EA   F  M  
Sbjct: 305 HGYSILGQWKETAGMFREMTRRG----LMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAA 360

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
              +PD+  Y+V+++     G       L   ME  G     D   Y ILI +Y K GM 
Sbjct: 361 KGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGI--VADHSVYNILIDAYGKRGMM 418

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                       EA  +F  M  +G +PD   Y  +I    +  R+  A++ F+ M   G
Sbjct: 419 D-----------EAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMG 467

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P+ + YNS I+ + +   + KA E++ +M +     P +  +  II++LC+ GRV+EA
Sbjct: 468 LKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEA 527

Query: 378 RDFLAELVDGGSVPREYTYKLVCDA 402
           +D    ++  G  P   T+  + D 
Sbjct: 528 QDIFDLVIHIGERPDVITFNSLIDG 552



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 22/217 (10%)

Query: 188 ALATFYRMKQFRCRP-----DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           A+A F R+ +   RP      V  YN++++  CR         L  +    G +   DV 
Sbjct: 98  AVALFNRICREEARPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLK--TDVI 155

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
              IL+   C            +R     N L   M   G  PD ++Y+ ++   C+  R
Sbjct: 156 VANILLKCLCH----------AKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSR 205

Query: 303 IERALELFDDMNKK--GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSS 359
            +RAL+L   M KK  GC PN V+YN+ I  +    E+ KA  +  +M  +  G VP   
Sbjct: 206 SQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEM--MQQGVVPDVV 263

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +Y+  I ALC+A  + +A   L +++  G  P + TY
Sbjct: 264 TYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTY 300



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 120/320 (37%), Gaps = 64/320 (20%)

Query: 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE 165
           Q + +GL   T  Y+ + + F    N +  KE+                + +M  RG   
Sbjct: 462 QMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKEL----------------ISEMMSRGIPR 505

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
              T     +I  L +EG V EA   F  +     RPDV  +N +I+    VG   KA  
Sbjct: 506 -PNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFG 564

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           +L+ M   G    PDV TY+ L+  YC+ G           RI +   LFR ML KG  P
Sbjct: 565 VLDAMISVGIE--PDVVTYSALLDGYCRNG-----------RIDDGLILFREMLSKGVKP 611

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
             + Y  ++ G     R   A ++  +M + G   +  T    +      N  D+AI + 
Sbjct: 612 TTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALF 671

Query: 346 RKMQNLNHG----------------------------------VPTSSSYTPIIHALCEA 371
           +K+  +N                                    VP +S+Y  +I  L + 
Sbjct: 672 KKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKE 731

Query: 372 GRVLEARDFLAELVDGGSVP 391
           G V EA +  + +   G  P
Sbjct: 732 GSVEEADNMFSLMEKSGCAP 751



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 13/189 (6%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P V TY IL+   C+         A R  +  A  LF   L  G   DV+  N L+   C
Sbjct: 117 PTVCTYNILMDCCCR---------AHRPTVGFA--LFGRFLKTGLKTDVIVANILLKCLC 165

Query: 299 KTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-P 356
              R + A+  L   M + G  P+ ++Y++ ++     +   +A++++  M   + G  P
Sbjct: 166 HAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSP 225

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              SY  +IH     G V +A +   E++  G VP   TY    DAL  A      +  L
Sbjct: 226 NVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVL 285

Query: 417 RKRIRDGIE 425
           R+ I +G E
Sbjct: 286 RQMISNGFE 294



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           +P V  YN L+D CC+ +R      LF    K G   + +  N  ++        D A+ 
Sbjct: 116 LPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVN 175

Query: 344 -MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV--DGGSVPREYTYKLV 399
            ++ +M  L  GV P + SY+ ++ +LCE  R   A D L  +V   GG  P   +Y  V
Sbjct: 176 VLLHRMPEL--GVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTV 233



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 103/294 (35%), Gaps = 70/294 (23%)

Query: 125 FFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL 184
           FF+   N + CKE  +V A     + ++D +  +  R   +++T +S   LI   G  G 
Sbjct: 510 FFNSIINSL-CKEGRVVEA-----QDIFDLVIHIGERP--DVITFNS---LIDGYGLVGK 558

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR-------- 236
           + +A      M      PDV  Y+ +++  CR G  +    L  +M   G +        
Sbjct: 559 MEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGI 618

Query: 237 -----------------CPPDVYTYTILISSYCKYGMQTGCRK----------------- 262
                            C   + + T +  S C   +   CR                  
Sbjct: 619 ILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMN 678

Query: 263 ----------------AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
                            +R+R  EAN LF  +   G VP+   Y  +I    K   +E A
Sbjct: 679 VKFNIAIINTMIDAMYKVRKR-EEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEA 737

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
             +F  M K GC P+    N+ IR      EI KA   + K+      +  S++
Sbjct: 738 DNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTA 791


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 119/256 (46%), Gaps = 14/256 (5%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T L+  L   G+V EA++ F  M+   C PD + Y  +++ LC  G   +A  LL
Sbjct: 141 TAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLL 200

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
                 GF   P+V  Y  LI  YC  G            +  A  +F  M   G  P+V
Sbjct: 201 SDAMAEGFE--PNVVVYNALIDGYCNVG-----------DLELAVDVFERMDVNGCSPNV 247

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI G CK+ +++RA+ LF  M   G +PN VTY + I+      ++D A  +++ 
Sbjct: 248 RTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQS 307

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           M+N +  VP   + + +I ALC+  RV EA+  L  L+  G    E  Y  + D L  A 
Sbjct: 308 MEN-SGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAG 366

Query: 408 EPSLLDDGLRKRIRDG 423
             +  D  ++  +  G
Sbjct: 367 RFAAADRLMQTLVSQG 382



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 18/243 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           GL+  A   F  M    C    + Y  +++ LC  G   +A  +   M+  G  C PD +
Sbjct: 121 GLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADG--CAPDPH 178

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
            Y  ++   C  G           R  EA  L    + +GF P+VV YN LIDG C    
Sbjct: 179 VYATMVHGLCGAG-----------RTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGD 227

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +E A+++F+ M+  GC PN  TY   I  +    ++D+A+ +  +M +    VP   +YT
Sbjct: 228 LELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGL-VPNVVTYT 286

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRK 418
            +I   C  G++  A   L  + + G VP E+T  ++ DAL       E   LL   ++K
Sbjct: 287 ALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQK 346

Query: 419 RIR 421
            I+
Sbjct: 347 GIK 349



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 114/236 (48%), Gaps = 21/236 (8%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+    +G ++ A      M+     P+ +  +V+I+ALC+     +A+ LL  +  
Sbjct: 286 TALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQ 345

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +    VYT   LI   CK G           R   A+ L + ++ +GFVPD   Y+ 
Sbjct: 346 KGIKVNEIVYTS--LIDGLCKAG-----------RFAAADRLMQTLVSQGFVPDAHTYSS 392

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI--DKAIEMMRKMQN 350
           LIDG C+   +  A+ + DDM +KG  P+ VTY   I    +V E+  D + +++ KM  
Sbjct: 393 LIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIID--ELVREVGADGSKKILDKM-- 448

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK-LVCDALN 404
           +  G+ P   +YT  + + C  GR+ +A   +  +VD G  P   TY  L+C   N
Sbjct: 449 IAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYAN 504



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 116/290 (40%), Gaps = 67/290 (23%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI  L  +  ++EA+     M +   +P    Y ++I+ L R    + ++ +L++M  
Sbjct: 391 SSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIA 450

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  PDV+TYTI + SYC  G           R+ +A H+   M+  G  P++V YN 
Sbjct: 451 AGIK--PDVFTYTIFVRSYCHEG-----------RMEDAEHMMLHMVDHGVCPNLVTYNA 497

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVT---------------------------- 324
           LI G        +A   F  M   GC PN  +                            
Sbjct: 498 LICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIA 557

Query: 325 -----------------------YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
                                  YN F+     V+ +D+A  ++ +MQ+ N   P+   Y
Sbjct: 558 EMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANL-TPSEDVY 616

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
           T II   C    + EA  F+  +V  G +P+  +Y+ +  +L   EE S+
Sbjct: 617 TSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISSL--CEEGSI 664



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 16/242 (6%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           S   +G +    + + LI  L +   V EA      + Q   + +   Y  +I+ LC+ G
Sbjct: 307 SMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAG 366

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
            F  A  L++ +   GF   PD +TY+ LI   C+           ++ + EA  +   M
Sbjct: 367 RFAAADRLMQTLVSQGF--VPDAHTYSSLIDGLCR-----------QKELSEAMLVLDDM 413

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           + KG  P  V Y  +ID   +    + + ++ D M   G  P+  TY  F+R Y     +
Sbjct: 414 MEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRM 473

Query: 339 DKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           + A  MM  M  ++HGV P   +Y  +I      G   +A      +V  G  P E +Y 
Sbjct: 474 EDAEHMMLHM--VDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYT 531

Query: 398 LV 399
           ++
Sbjct: 532 VL 533



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 13/178 (7%)

Query: 226 LLEQMELPGFRCPP-DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
           +L  ME    R P  ++ TYT LI++YC  G     ++          HL  L L  GF 
Sbjct: 56  MLADMESFASRMPARNLRTYTTLINAYCLAGDLPASKR----------HLSSL-LRAGFA 104

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           PD  AY   + G C+   +  A  LF  M  +GC+    TY + +        + +A+ +
Sbjct: 105 PDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSV 164

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              MQ  +   P    Y  ++H LC AGR  EA   L++ +  G  P    Y  + D 
Sbjct: 165 FAGMQA-DGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDG 221



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 92/247 (37%), Gaps = 33/247 (13%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR--------- 216
           LVT +++ C    LG   L ++A +TF  M    C+P+  +Y V++  L +         
Sbjct: 492 LVTYNALICGYANLG---LTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPA 548

Query: 217 -------VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
                  +        LLE+M     + P ++  Y   ++S C+             R+ 
Sbjct: 549 NSVSIWKIAEMKYLHGLLEEM--VKLQLPSEIDIYNCFLTSLCRVD-----------RLD 595

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA  L   M      P    Y  +I  CC+   +  AL   D M K G IP   +Y   I
Sbjct: 596 EAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHII 655

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                   I  A ++   M +  +      ++  +I  L + G V E    L+ + +   
Sbjct: 656 SSLCEEGSIQTAKQVFGDMLSKEYNYE-EIAWRILIDGLLQKGYVAECSSLLSVMEEKNY 714

Query: 390 VPREYTY 396
            P +  Y
Sbjct: 715 RPSDALY 721


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 119/241 (49%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M     +PDVY Y+V+IN LC+    ++A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           ++  A  +++ ML +GF PD + YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------KLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           + +A +L D+M+ KG  P+++TY + I       +++ A E  ++M   N  +    SYT
Sbjct: 292 LXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD-DVSYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY +V        +  +    L++  RD
Sbjct: 351 ALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 109/215 (50%), Gaps = 19/215 (8%)

Query: 191 TFYRMKQFRCR--PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           +FY+ +   CR    +Y +N++++  C+ G    A+ + + +   G R  P V ++  L+
Sbjct: 122 SFYK-EILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLR--PSVVSFNTLM 178

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
           + Y K G            + E   L   M   G  PDV  Y+ LI+G CK  +++ A +
Sbjct: 179 NGYIKLG-----------DLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHK 227

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
           LFD+M  +G +PN VT+ + I  +    ++D A+E+ ++M  L+ G  P   +Y  +I+ 
Sbjct: 228 LFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQM--LSQGFSPDXITYNTLIYG 285

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           LC+ G + +A+D   E+   G  P + TY  + D 
Sbjct: 286 LCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDG 320



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 26/223 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ +    L+D + D     NG   TT     LI    + G ++ A+  + +
Sbjct: 217 CKE-----SKMDEAHKLFDEMLDRGLVPNGVTFTT-----LIDGHCKNGKLDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD   YN +I  LC+ G+  +A+ L ++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLK--PDKITYTTLIDGSCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D V+Y  LI G CK  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN--IRL--------DDVSYTALISGLCKEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
              G  P+  TY   +  +    ++    +++++MQ   H VP
Sbjct: 373 LSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGH-VP 414


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 27/253 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +IK   + G  + A+     MK   C+PD ++Y  +I+  C++     A  +  +M   G
Sbjct: 476 IIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRG 535

Query: 235 FRCPPDVYTYTILISSYCK------------YGMQTGCRKAIR------------RRIWE 270
             CP +V TYT LIS YCK               ++GCR  ++                 
Sbjct: 536 L-CPNEV-TYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSG 593

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L ++ML +   PDVV Y+ +I+G C    I  ALE+F+ M K GC+PN  TY+S I+
Sbjct: 594 AEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQ 653

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                  +++A EM  +++     +P   +Y  +I     +G+V  A DFL E+++ G  
Sbjct: 654 ALGQEGRVEEAEEMFSELKKQGL-IPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQ 712

Query: 391 PREYTYKLVCDAL 403
           P   TY ++   L
Sbjct: 713 PTLQTYDVLIKGL 725



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 116/263 (44%), Gaps = 19/263 (7%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           T   M + + R  ++   ++    M   G      T S   LI  L   G VNEAL    
Sbjct: 265 TYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYST--LINGLCNSGRVNEALDFIS 322

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            M +    P V+ +   I ALC +G    A  +   M+  G  C P+VYTYT LIS    
Sbjct: 323 EMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKG--CKPNVYTYTSLISG--- 377

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
              Q   R AI         LF  M   G VP+ V YN L++   +   I+ AL +F+ M
Sbjct: 378 ---QRVSRMAI--------GLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMM 426

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            K GC+PN  +YN  IR Y  + + +KA+ M+  M       PT  +Y  II   C++G 
Sbjct: 427 GKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLK-GRPTPTLVTYNIIIKGYCDSGD 485

Query: 374 VLEARDFLAELVDGGSVPREYTY 396
              A   L  +   G  P E++Y
Sbjct: 486 TDVAIRVLELMKANGCQPDEWSY 508



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 127/311 (40%), Gaps = 67/311 (21%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           ++L   S+RG    + T   T L+  L +  + +  +  ++++ +   +P++  YN VIN
Sbjct: 179 NYLDMFSQRGPKMGLFT--YTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVIN 236

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGC 260
           ALC+ GN   A  ++ ++   G +  PD +TYT +I  YC+               + GC
Sbjct: 237 ALCKDGNVRDAESIINKVFKSGMK--PDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGC 294

Query: 261 RKAIRR------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
                             R+ EA      M   G +P V  +   I   C   RIE A +
Sbjct: 295 EPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWK 354

Query: 309 LFDDMNKKGCIPNRVTYNSFIR--------------------------YYSVVN------ 336
           +F DM KKGC PN  TY S I                           Y +++N      
Sbjct: 355 IFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENM 414

Query: 337 EIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
           EID A+ +   M    HG +P +SSY  +I   C  G   +A   L  ++ G   P   T
Sbjct: 415 EIDSALIVFNMMG--KHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVT 472

Query: 396 YKLV----CDA 402
           Y ++    CD+
Sbjct: 473 YNIIIKGYCDS 483



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 115/274 (41%), Gaps = 55/274 (20%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA----RFLLE 228
           T LI    ++  ++ A     RMK+  CRP+V  YNV+I+ L +  NF+ A    + +LE
Sbjct: 544 TALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLE 603

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAIRR---------- 266
           +      +  PDV TY+ +I+  C  G            ++ GC   +            
Sbjct: 604 E------KISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQ 657

Query: 267 --RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             R+ EA  +F  +  +G +PD V Y  +I+ C  + +++RA +   +M   GC P   T
Sbjct: 658 EGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQT 717

Query: 325 YNSFIR-------YYSVVNEIDKAIEMMRKMQNLNHGVPTSSS--------------YTP 363
           Y+  I+       Y+ +V   + A       Q +N  V +  S              Y  
Sbjct: 718 YDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDA 777

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           ++  L  +GR  EA +    +V     P + TYK
Sbjct: 778 LLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYK 811



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 116/252 (46%), Gaps = 21/252 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +IK    +  + +AL       Q   +  ++ Y  ++  L ++   +       Q+   G
Sbjct: 164 MIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREG 223

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P++  Y  +I++ CK G            + +A  +   +   G  PD   Y  +I
Sbjct: 224 LQ--PNLLIYNSVINALCKDG-----------NVRDAESIINKVFKSGMKPDTFTYTSMI 270

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C+   ++ A E+F+ M+++GC PN  TY++ I        +++A++ + +M    HG
Sbjct: 271 LGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMT--RHG 328

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
           V PT  ++T  I ALC+ GR+ +A     ++   G  P  YTY     +L + +  S + 
Sbjct: 329 VLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYT----SLISGQRVSRMA 384

Query: 414 DGLRKRI-RDGI 424
            GL  R+ RDG+
Sbjct: 385 IGLFHRMSRDGV 396



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 118/282 (41%), Gaps = 46/282 (16%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           DF+ +M+R  +G L T  + T  I  L + G + +A   F  MK+  C+P+VY Y  +I+
Sbjct: 319 DFISEMTR--HGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLIS 376

Query: 213 ----ALCRVGNFNKA----------------RFLLEQMELPG----------FRCPPDVY 242
               +   +G F++                   L+E ME+              C P+  
Sbjct: 377 GQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTS 436

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           +Y  LI  YC  G              +A  +   ML     P +V YN +I G C +  
Sbjct: 437 SYNELIRGYCTIG-----------DTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGD 485

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
            + A+ + + M   GC P+  +Y   I  +  +++++ A  M  +M  ++ G+ P   +Y
Sbjct: 486 TDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEM--MDRGLCPNEVTY 543

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           T +I   C+  ++  A   L  +   G  P   TY ++   L
Sbjct: 544 TALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGL 585



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 104/260 (40%), Gaps = 24/260 (9%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G L    + + LI+ LG+EG V EA   F  +K+    PD   Y  +I      G  ++
Sbjct: 639 HGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDR 698

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC--RKAIRRRIWEANHLFRLMLF 280
           A   L +M   G  C P + TY +LI      G+Q      K +      +   F   + 
Sbjct: 699 AFDFLGEMINAG--CQPTLQTYDVLIK-----GLQNEMVYHKLVALPNAASTSTFDDQII 751

Query: 281 KGFVPDVVA--------------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
              V  V++              Y+ L+    ++ R   A  L+  M  +   PN+ TY 
Sbjct: 752 NKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYK 811

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            F+       ++D A+++ + M +    +   + Y  +I  LC+  R  EAR    +++ 
Sbjct: 812 HFLISLLRALKVDLAMDVFKHMSDQRCELHL-TGYKELICTLCQLHRRKEARFVFEKMLS 870

Query: 387 GGSVPREYTYKLVCDALNAA 406
                 E  + ++ + L  A
Sbjct: 871 RALNADEIVWTILINGLLGA 890


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 121/263 (46%), Gaps = 20/263 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L T  +   L+ +  +      A   +  M + R +  VY +N++IN LC+ G   KA
Sbjct: 181 GVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKA 240

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           +  +  ME  G +  P++ TY  ++  YC  G           R+  A+ +   M  +  
Sbjct: 241 KDFVGHMETSGVK--PNIVTYNTIVHGYCSSG-----------RVEAADAILTTMKRQKI 287

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PD   Y  LI G CK  R+E A ++F++M +KG  P+ V YN+ I  +     +D A  
Sbjct: 288 EPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASA 347

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV--- 399
              +M  L  G+ PT S+Y  +IHAL    R  EA   + E+ + G  P   TY ++   
Sbjct: 348 YKDEM--LKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILING 405

Query: 400 -CDALNAAEEPSLLDDGLRKRIR 421
            C   NA +   L D+ L   I+
Sbjct: 406 YCRCANAKKAFLLHDEMLASGIK 428



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 131/292 (44%), Gaps = 18/292 (6%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           TC  +  +F + N  +  W    +M R      V T ++  +I VL +EG + +A     
Sbjct: 188 TCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNI--MINVLCKEGKLKKAKDFVG 245

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            M+    +P++  YN +++  C  G    A  +L  M+    +  PD +TY  LIS  CK
Sbjct: 246 HMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQ--KIEPDSFTYGSLISGMCK 303

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           R+ EA+ +F  M+ KG  P  V YN LIDG C    ++ A    D+M
Sbjct: 304 QG-----------RLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEM 352

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
            KKG  P   TYNS I    +    D+A  M++++Q    G+ P + +Y  +I+  C   
Sbjct: 353 LKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQ--EKGISPDAITYNILINGYCRCA 410

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
              +A     E++  G  P + TY  +   L+        DD  +K   +G+
Sbjct: 411 NAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGV 462



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 124/258 (48%), Gaps = 16/258 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T S+   LI  L  E   +EA      +++    PD   YN++IN  CR  N  KA  L 
Sbjct: 360 TMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLH 419

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M   G +  P   TYT L+    K           + R+ EA+ LF+ +  +G +PDV
Sbjct: 420 DEMLASGIK--PTKKTYTSLLHVLSK-----------KNRMKEADDLFKKITSEGVLPDV 466

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           + +N LIDG C    ++ A EL  DM++    P+ VT+N+ ++ +    ++++A E+  +
Sbjct: 467 IMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDE 526

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           M+    G+ P   S+  +I      G + +A     E++D G  P   TY  +   L   
Sbjct: 527 MK--RRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKN 584

Query: 407 EEPSLLDDGLRKRIRDGI 424
           +E  L ++ L++ +  G+
Sbjct: 585 QEGDLAEELLKEMVSKGM 602



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 26/197 (13%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T L+ VL ++  + EA   F ++      PDV  +N +I+  C   N   A  LL
Sbjct: 430 TKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELL 489

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK---AIRRRIWEANHL---------- 274
           + M+    + PPD  T+  ++  +C+ G     R+    ++RR  + +H+          
Sbjct: 490 KDMD--RMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYS 547

Query: 275 --------FRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
                   FR+   ML  GF P V+ YN L+ G CK    + A EL  +M  KG  P+  
Sbjct: 548 RRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDT 607

Query: 324 TYNSFIRYYSVVNEIDK 340
           TY + I   + VN  D+
Sbjct: 608 TYFTLIEGIAKVNIPDE 624



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 6/146 (4%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           GF   +V ++ LI  CC   R + A E F  M +KG +P   T NS +  +  +N  + A
Sbjct: 147 GFKSSIV-FDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAA 205

Query: 342 IEMMRKMQNLNHGVPTSSSYT--PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             +  +M  L      SS YT   +I+ LC+ G++ +A+DF+  +   G  P   TY  +
Sbjct: 206 WVLYAEMFRLR---IKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTI 262

Query: 400 CDALNAAEEPSLLDDGLRKRIRDGIE 425
                ++      D  L    R  IE
Sbjct: 263 VHGYCSSGRVEAADAILTTMKRQKIE 288


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 34/255 (13%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           S T LI  L + G V+ A   F +M     CRP+ + YN +++ LC+    + AR ++ +
Sbjct: 98  SYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITE 157

Query: 230 MELPGFRCPPDVYTYTILISSYCKYG--------------------------MQTGCRKA 263
                F   PDV TY  L+++  + G                          + TG  +A
Sbjct: 158 ARKRDF--APDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRA 215

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
             RR+ +A  +F  M+ + F P++V Y+ +IDG CK+ +++ A +L D M  +GC P+ V
Sbjct: 216 --RRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLV 273

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLA 382
            Y   +  +S    +D A+ ++R+M  ++ G +P   +YT +I  LC+ GRV +A +   
Sbjct: 274 AYTPLVLGFSAAGRLDSALGLLRRM--VSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFR 331

Query: 383 ELVDGGSVPREYTYK 397
           ELV     P   TY 
Sbjct: 332 ELVANKCSPNVVTYS 346



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 135/288 (46%), Gaps = 31/288 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF-YRMKQFRC 200
           F   +++   +  L++M   G      T+S+  +++ L   G V +AL  F   ++    
Sbjct: 35  FCNASDLDAAFSLLREMDVEGMQCNDRTTSI--ILQGLCRCGRVAQALEHFDASLELAHA 92

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDV +Y  +IN LC++G  + A  L  +M   G  C P+ +TY  L+   CK       
Sbjct: 93  QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAG-GCRPNAFTYNALVDGLCKQDRLDAA 151

Query: 261 RKAIRR------------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           R  I                          R+ EA   F  M  +G+VP +V++N +I G
Sbjct: 152 RAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITG 211

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV- 355
            C+  R+  ALE+F++M  +   PN VTY+  I      +++D+A +++ +M  ++ G  
Sbjct: 212 LCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRM--VSEGCR 269

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           P   +YTP++     AGR+  A   L  +V  G +P   TY +V D L
Sbjct: 270 PDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKL 317



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 17/246 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + T  S   +I  L     + +AL  F  M      P++  Y+VVI+ LC+    ++A
Sbjct: 197 GYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEA 256

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           + LL++M   G  C PD+  YT L+  +   G           R+  A  L R M+ +G 
Sbjct: 257 QQLLDRMVSEG--CRPDLVAYTPLVLGFSAAG-----------RLDSALGLLRRMVSQGC 303

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           +PDVV Y  +ID  CK  R++ A E+F ++    C PN VTY++ I  Y   + +D+  +
Sbjct: 304 IPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGK 363

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +MR+M       P   +Y  +I  L    R  EA     E+ + G VP   TY+ +  AL
Sbjct: 364 VMREMACR----PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRAL 419

Query: 404 NAAEEP 409
              ++P
Sbjct: 420 RMIDQP 425



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 116/276 (42%), Gaps = 48/276 (17%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC----- 237
           G  N+AL  F R    +       YNV+I   C   + + A  LL +M++ G +C     
Sbjct: 5   GSHNQALQLF-RENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTT 63

Query: 238 -----------------------------PPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
                                         PDV +YT LI+  CK G           R+
Sbjct: 64  SIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG-----------RV 112

Query: 269 WEANHLFRLMLFKGFV-PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
             A  LFR M+  G   P+   YN L+DG CK  R++ A  +  +  K+   P+ VTYN+
Sbjct: 113 DAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNT 172

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            +     +  +D+A+    +M    + VPT  S+  II  LC A R+ +A +   E++D 
Sbjct: 173 LMAALFQLGRVDEALATFTQMTEEGY-VPTLVSFNAIITGLCRARRLADALEVFNEMIDR 231

Query: 388 GSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
              P   TY +V D L  +++       L + + +G
Sbjct: 232 DFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEG 267


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 127/265 (47%), Gaps = 20/265 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L++M  RG   L    +   +I+ + +EG+V  A      +    C+PDV +YN+++ A
Sbjct: 229 LLEEMLARG--LLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRA 286

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
               G +++   L+ +M   G  C P+  TY+ILISS C++G           RI EA  
Sbjct: 287 FLNQGKWDEGEKLVAEMFSRG--CEPNKVTYSILISSLCRFG-----------RIDEAIS 333

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           + ++M+ K   PD  +Y+ LI   CK  R++ A+ + D M   GC+P+ V YN+ +    
Sbjct: 334 VLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALC 393

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
                ++A+E+  K++ +    P  SSY  +I AL   G    A   +  ++  G  P E
Sbjct: 394 KNGNANQALEIFNKLRGMGCP-PNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDE 452

Query: 394 YTYKLVCDALN----AAEEPSLLDD 414
            TY  +   L       E   LLDD
Sbjct: 453 ITYNSLISCLCRDGLVEEAIGLLDD 477



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 29/228 (12%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC---KYGMQ 257
            PDV+AYN VI+  C+V     A  +L +M+  GF   PD+ TY I+I S C   K G+ 
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFL--PDIVTYNIMIGSLCNRRKLGLA 191

Query: 258 ---------TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                      C   +               I EA  L   ML +G +PD+  YN +I G
Sbjct: 192 LKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRG 251

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV- 355
            CK   +ERA EL   +  KGC P+ ++YN  +R +    + D+  +++ +M   + G  
Sbjct: 252 MCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEM--FSRGCE 309

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           P   +Y+ +I +LC  GR+ EA   L  +++    P  Y+Y  +  AL
Sbjct: 310 PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISAL 357



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 20/262 (7%)

Query: 149 KGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           +G WD     + +M  RG      T S+  LI  L   G ++EA++    M +    PD 
Sbjct: 290 QGKWDEGEKLVAEMFSRGCEPNKVTYSI--LISSLCRFGRIDEAISVLKVMIEKELTPDT 347

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           Y+Y+ +I+ALC+ G  + A  +++ M   G  C PD+  Y  ++++ CK G         
Sbjct: 348 YSYDPLISALCKEGRLDLAIGIMDYMISNG--CLPDIVNYNTILAALCKNGNAN------ 399

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
                +A  +F  +   G  P+V +YN +I          RAL +   M  KG  P+ +T
Sbjct: 400 -----QALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEIT 454

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YNS I        +++AI ++  M+      PT  SY  ++  LC+  R+ +A    AE+
Sbjct: 455 YNSLISCLCRDGLVEEAIGLLDDMEQSGFR-PTVISYNIVLLGLCKVRRIDDAIGMFAEM 513

Query: 385 VDGGSVPREYTYKLVCDALNAA 406
           ++ G  P E TY L+ + +  A
Sbjct: 514 IEKGCRPNETTYILLIEGIGFA 535



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 102/217 (47%), Gaps = 16/217 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T S   LI  L +EG ++ A+     M    C PD+  YN ++ ALC+ GN N+A  +  
Sbjct: 347 TYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFN 406

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           ++   G  CPP+V +Y  +IS+    G ++            A  +   M+ KG  PD +
Sbjct: 407 KLR--GMGCPPNVSSYNTMISALWSCGDRS-----------RALGMVPAMISKGVDPDEI 453

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN LI   C+   +E A+ L DDM + G  P  ++YN  +     V  ID AI M  +M
Sbjct: 454 TYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEM 513

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
             +  G  P  ++Y  +I  +  AG   EA +    L
Sbjct: 514 --IEKGCRPNETTYILLIEGIGFAGWRTEAMELANSL 548



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 20/235 (8%)

Query: 173 TCLIKVLG---EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           T L+K+L    + G  NE+L     +      PDV     +I       N  KA  ++E 
Sbjct: 69  THLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEI 128

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           +E       PDV+ Y  +IS +CK             RI  A  +   M  +GF+PD+V 
Sbjct: 129 LE---SHTEPDVFAYNAVISGFCKV-----------NRIEAATQVLNRMKARGFLPDIVT 174

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN +I   C   ++  AL++ D +    C+P  +TY   I    V   I++A++++ +M 
Sbjct: 175 YNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEM- 233

Query: 350 NLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            L  G +P   +Y  II  +C+ G V  A + +  L   G  P   +Y ++  A 
Sbjct: 234 -LARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAF 287



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 69/159 (43%), Gaps = 13/159 (8%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           RG G     SS   +I  L   G  + AL     M      PD   YN +I+ LCR G  
Sbjct: 409 RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLV 468

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            +A  LL+ ME  GFR  P V +Y I++   CK            RRI +A  +F  M+ 
Sbjct: 469 EEAIGLLDDMEQSGFR--PTVISYNIVLLGLCKV-----------RRIDDAIGMFAEMIE 515

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           KG  P+   Y  LI+G         A+EL + +  +  I
Sbjct: 516 KGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVI 554


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 133/272 (48%), Gaps = 27/272 (9%)

Query: 142 FARGNNVKGL---------WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF 192
           + RG  + GL           +LK M  +     VT  S   ++  L ++G+V EAL  F
Sbjct: 132 YTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSA--VVDGLCKDGMVFEALDLF 189

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
            +M     +P+++ YN +I+ LC    + +A  LL  M   G    PDV T+ ++   + 
Sbjct: 190 SQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIM--PDVQTFNVIAGRFL 247

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           K GM           I  A  +F  M   G   +VV YN +I   C   +++ A+E+FD 
Sbjct: 248 KTGM-----------ISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDL 296

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEA 371
           M +KGC+PN VTYNS I  +     ++KA+  + +M  +N+G+ P   +++ +I   C+A
Sbjct: 297 MIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEM--VNNGLDPDVVTWSTLIGGFCKA 354

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           G+ + A++    +   G +P   T  ++ D L
Sbjct: 355 GKPVAAKELFFVMHKHGQLPDLQTCAIILDGL 386



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 120/258 (46%), Gaps = 21/258 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D LKDM    +       +   +I  L + G  + AL+   +M++  C  DV AY+ V++
Sbjct: 120 DHLKDMGYESD-----RYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVD 174

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+ G   +A  L  QM   G +  P+++TY  LI   C +            R  EA 
Sbjct: 175 GLCKDGMVFEALDLFSQMTGKGIQ--PNLFTYNCLIHGLCNF-----------DRWKEAA 221

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L   M+ KG +PDV  +N +     KT  I RA  +F  M   G   N VTYNS I  +
Sbjct: 222 PLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAH 281

Query: 333 SVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
            ++N++  A+E+   M  +  G +P   +Y  +IH  CE   + +A  FL E+V+ G  P
Sbjct: 282 CMLNQMKDAMEVFDLM--IRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDP 339

Query: 392 REYTYKLVCDALNAAEEP 409
              T+  +      A +P
Sbjct: 340 DVVTWSTLIGGFCKAGKP 357



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 118/259 (45%), Gaps = 27/259 (10%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE---ALATFYRMKQFRCRPDVY 205
           K ++ F+  M    N  +VT +S+      +G   ++N+   A+  F  M +  C P++ 
Sbjct: 256 KSIFSFMGHMGIEHN--VVTYNSI------IGAHCMLNQMKDAMEVFDLMIRKGCLPNIV 307

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            YN +I+  C   N NKA + L +M   G    PDV T++ LI  +CK G          
Sbjct: 308 TYNSLIHGWCETKNMNKAMYFLGEMVNNGL--DPDVVTWSTLIGGFCKAGKPVA------ 359

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
                A  LF +M   G +PD+     ++DG  K +    A+ LF ++ K     + + Y
Sbjct: 360 -----AKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIY 414

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAEL 384
           +  +       +++ A+E+   + +   GV     +Y  +I+ LC+ G + +A D L ++
Sbjct: 415 SIILNGMCSSGKLNDALELFSYLSS--KGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKM 472

Query: 385 VDGGSVPREYTYKLVCDAL 403
            + G  P E TY +    L
Sbjct: 473 EENGCPPDECTYNVFVQGL 491



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 17/197 (8%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           FL +M   G + ++VT S+   LI    + G    A   F+ M +    PD+    ++++
Sbjct: 328 FLGEMVNNGLDPDVVTWST---LIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILD 384

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            L +    ++A  L  ++E        D+  Y+I+++  C  G           ++ +A 
Sbjct: 385 GLFKCHFHSEAMSLFRELE--KMNSDLDIIIYSIILNGMCSSG-----------KLNDAL 431

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            LF  +  KG   DVV YN +I+G CK   ++ A +L   M + GC P+  TYN F++  
Sbjct: 432 ELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGL 491

Query: 333 SVVNEIDKAIEMMRKMQ 349
               EI K+ + +  M+
Sbjct: 492 LRRYEISKSTKYLMFMK 508



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 13/152 (8%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           +EA++ F  +++     D+  Y++++N +C  G  N A  L   +   G +   DV TY 
Sbjct: 393 SEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKI--DVVTYN 450

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           I+I+  CK G+           + +A  L   M   G  PD   YN  + G  + Y I +
Sbjct: 451 IMINGLCKEGL-----------LDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISK 499

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           + +    M  KG   N  T    I Y+S   E
Sbjct: 500 STKYLMFMKGKGFRANATTTKLLINYFSANKE 531



 Score = 45.4 bits (106), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 40/191 (20%)

Query: 274 LFRLMLFKGFVPDVVAY----NCL-------------------------------IDGCC 298
           L + M + G  P+V  +    NCL                               ++G C
Sbjct: 48  LIKHMSYIGVKPNVSTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLC 107

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
               + +A+   D +   G   +R T  + I     V     A+  ++KM+  N  +   
Sbjct: 108 VEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDV- 166

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDD 414
           ++Y+ ++  LC+ G V EA D  +++   G  P  +TY      +C+     E   LL +
Sbjct: 167 TAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLAN 226

Query: 415 GLRKRIRDGIE 425
            +RK I   ++
Sbjct: 227 MMRKGIMPDVQ 237


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 134/273 (49%), Gaps = 29/273 (10%)

Query: 157 DMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           ++ RR   E+ + +  T   +I  L ++GL  + L  F  M      P+V  Y+ +IN L
Sbjct: 65  ELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGL 124

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR-------- 266
           CRVG   +A  L ++M   G +   +V TY  LI + C++G+     +   +        
Sbjct: 125 CRVGKLREAVNLFDEMVSQGIK--ANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILP 182

Query: 267 ----------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
                           ++ EA  +F LM+ +G  P++V YN L++G C  ++++ A+ LF
Sbjct: 183 DVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLF 242

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
           + M ++G   + ++YN+ I  Y    + ++A+ + RKMQ      P+ ++YT ++ AL +
Sbjct: 243 EVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQ-YEELTPSITTYTILLKALYQ 301

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            GR+  A++    +   G  P   TY ++ D L
Sbjct: 302 NGRIRTAKELFNNMQICGQSPSLDTYTVLLDGL 334



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 20/236 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +V+ L+K +  EG V +AL  F +M +   + D+  Y  +INAL +     +A  L  +M
Sbjct: 11  TVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRM 70

Query: 231 --ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
             E+    C  + +TY ++I S CK G+     K           +FR M+  G  P+V+
Sbjct: 71  LSEI----CSGNFFTYGLVIDSLCKDGLAIKGLK-----------MFREMINMGICPNVI 115

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y+ LI+G C+  ++  A+ LFD+M  +G   N +TYNS I          +A     +M
Sbjct: 116 VYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQM 175

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +  G+ P   ++T +I  L + G+V EA      ++  G  P   TY  + + L
Sbjct: 176 --VGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGL 229



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 122/269 (45%), Gaps = 24/269 (8%)

Query: 150 GLWDFLKDMSRR-----GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           GLW   K+ +R      G G L    + T LI  L ++G V EA   F  M +    P++
Sbjct: 163 GLW---KEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNI 219

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             YN ++N LC     + A  L E M   G +   DV +Y  LI+ YC  G         
Sbjct: 220 VTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKI--DVISYNTLINGYCTSG--------- 268

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             +  EA  LFR M ++   P +  Y  L+    +  RI  A ELF++M   G  P+  T
Sbjct: 269 --KTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDT 326

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y   +        I++AI++ R ++++ +  P+   Y+ +I  + +A R   A +   E+
Sbjct: 327 YTVLLDGLCKNGCIEEAIDVFRSLKSIKYK-PSIRIYSILIGGMFQARRWESAMEIFDEI 385

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLD 413
              G VP   TY ++ + L   +E  LL+
Sbjct: 386 PTVGLVPNIVTYNIMINGL--CKEGKLLE 412



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 32/243 (13%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI      G   EA+  F +M+     P +  Y +++ AL + G    A+ L   M
Sbjct: 256 SYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNM 315

Query: 231 ELPGFRCPPDVYTYTILISSYCK-------------------------YGMQTGCRKAIR 265
           ++ G    P + TYT+L+   CK                         Y +  G     R
Sbjct: 316 QICG--QSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQAR 373

Query: 266 RRIWE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           R  WE A  +F  +   G VP++V YN +I+G CK  ++  A  LF  M + GC  + ++
Sbjct: 374 R--WESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEIS 431

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA-RDFLAE 383
           +N  IR +   N++ KA+E +++M+  N   P  S    +++      +  E   +FL E
Sbjct: 432 FNFIIRGFLQENQVQKAMEFLKRMREKNFS-PNDSVTLMLVNLYAADAQSSELPNNFLHE 490

Query: 384 LVD 386
           LV 
Sbjct: 491 LVQ 493



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 16/205 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P++   + ++  +C  G    A  L ++M   GF+   D+  Y  LI++  K       
Sbjct: 6   QPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQ--GDILLYGYLINALRK------T 57

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
           R+A R     A  L R ML +    +   Y  +ID  CK     + L++F +M   G  P
Sbjct: 58  RQARR-----AVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICP 112

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARD 379
           N + Y+S I     V ++ +A+ +  +M  ++ G+  +  +Y  +IHA C  G   EA  
Sbjct: 113 NVIVYSSLINGLCRVGKLREAVNLFDEM--VSQGIKANVITYNSLIHASCRFGLWKEATR 170

Query: 380 FLAELVDGGSVPREYTYKLVCDALN 404
             +++V  G +P   T+  + D L+
Sbjct: 171 TFSQMVGEGILPDVVTFTTLIDHLS 195



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 13/170 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G+  +  + T L+  L + G + EA+  F  +K  + +P +  Y+++I  + +   +  A
Sbjct: 319 GQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESA 378

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             + +  E+P     P++ TY I+I+  CK G           ++ EA  LF  M   G 
Sbjct: 379 MEIFD--EIPTVGLVPNIVTYNIMINGLCKEG-----------KLLEAERLFVQMEESGC 425

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
             D +++N +I G  +  ++++A+E    M +K   PN       +  Y+
Sbjct: 426 EQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYA 475



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 7/148 (4%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G+ P++V  + L+ G C   ++  ALELFD M + G   + + Y   I       +  +A
Sbjct: 4   GYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRA 63

Query: 342 IEMMRKM-QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           +E+ R+M   +  G     +Y  +I +LC+ G  ++      E+++ G  P    Y  + 
Sbjct: 64  VELHRRMLSEICSG--NFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLI 121

Query: 401 DAL----NAAEEPSLLDDGLRKRIRDGI 424
           + L       E  +L D+ + + I+  +
Sbjct: 122 NGLCRVGKLREAVNLFDEMVSQGIKANV 149


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 129/310 (41%), Gaps = 51/310 (16%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V   ++ L +M  RG    V   S   LI+ L  +G ++EAL  F  M +  C 
Sbjct: 9   FCKAGQVDQAFELLDEMKERGVKMDVLLHST--LIQGLCRKGRIDEALEQFKSMGE-ECS 65

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMEL---PGFRCPPDVYTYTILISSYCKYGMQT 258
           P+V  YN V+N LC+    ++   L + ME        C PDV +Y+ +I + CK     
Sbjct: 66  PNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCK----- 120

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                  +R+ +A   F+ M   G  P+VV Y+ LIDG CK  R++ A  L   +  +  
Sbjct: 121 ------AQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDM 174

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV----------------------- 355
           +P  + YN+ +  +    +  + +E++  M+    G+                       
Sbjct: 175 VPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQ 234

Query: 356 -----------PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
                      P   +Y   +H LC+AG+V EA   L E+V+    P   TY  + D   
Sbjct: 235 FFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFC 294

Query: 405 AAEEPSLLDD 414
            A      DD
Sbjct: 295 KAGRMDKADD 304



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 104/209 (49%), Gaps = 20/209 (9%)

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           Y  VIN  C+ G  ++A  LL++M+  G +   DV  ++ LI   C+ G           
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVK--MDVLLHSTLIQGLCRKG----------- 48

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK-----GCIPN 321
           RI EA   F+ M  +   P+V+ YN +++G CK  RI+  LELFDDM K+     GC P+
Sbjct: 49  RIDEALEQFKSM-GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPD 107

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            ++Y++ I        +DKA E  ++M+ +    P   +Y+ +I  LC+  RV EA   L
Sbjct: 108 VISYSTVIDALCKAQRVDKAYEYFKRMRAVGCA-PNVVTYSSLIDGLCKVDRVDEAYSLL 166

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPS 410
            +L     VPR   Y  V +      +PS
Sbjct: 167 MQLKGEDMVPRAMYYNAVVNGFKRQGKPS 195



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 20/221 (9%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I    + G V++A      MK+   + DV  ++ +I  LCR G  ++A   LEQ + 
Sbjct: 3   TTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEA---LEQFKS 59

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF-----RLMLFKGFVPDV 287
            G  C P+V TY  +++  CK             RI E   LF     R     G  PDV
Sbjct: 60  MGEECSPNVITYNTVVNGLCK-----------ANRIDEGLELFDDMEKRYEASHGCEPDV 108

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           ++Y+ +ID  CK  R+++A E F  M   GC PN VTY+S I     V+ +D+A  ++ +
Sbjct: 109 ISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQ 168

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           ++  +  VP +  Y  +++     G+  E  + L  + + G
Sbjct: 169 LKGEDM-VPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKG 208



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 126/278 (45%), Gaps = 22/278 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F R        + L  M  +G G  +       ++  L +     +A   F R+ +   +
Sbjct: 188 FKRQGKPSECLELLLHMKEKGFG--INIIDFNAMLHALWKNDEQEKACQFFERLLKSGKK 245

Query: 202 PDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           P+V  YNV ++ LC+ G  ++A R LLE +E    +  PDV TY+ +I  +CK G     
Sbjct: 246 PNVVTYNVAVHGLCKAGKVDEAYRILLEMVE---SKVTPDVITYSSIIDGFCKAG----- 297

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+ +A+ +F  M+    +P  V +  L+ G  +  +   A  + +DM   G IP
Sbjct: 298 ------RMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIP 351

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
              TYN  +      + ++ A+E+  KM+      P +++Y P+I  LC A RV EA++F
Sbjct: 352 GLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQ-PDANTYAPLIQCLCRARRVDEAKEF 410

Query: 381 LAELVDGGSVPR----EYTYKLVCDALNAAEEPSLLDD 414
           L  +     VP         +++C      E  S+LD+
Sbjct: 411 LDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDN 448



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 18/187 (9%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V  AL  +++MK+ + +PD   Y  +I  LCR    ++A+  L+ ME       P+    
Sbjct: 369 VESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNV--VPNGAIC 426

Query: 245 TILISSYCKYGMQTGCRKAIRRRIW--------EANHLFRLMLFKGFVPDVVAYNCLIDG 296
             L+   CK G        +   +         EA  +   M+ KG  PD   Y  ++  
Sbjct: 427 HALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRS 486

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            C   R++ A+  F+ M  +GC P  VTY   I      +  D A  +   M        
Sbjct: 487 LCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAM-------- 538

Query: 357 TSSSYTP 363
            ++ +TP
Sbjct: 539 VAAGFTP 545



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 36/238 (15%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P +  YNV+++ +C   +   A  +  +M+    +  PD  TY  LI   C+        
Sbjct: 351 PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQ--PDANTYAPLIQCLCR-------- 400

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA--------------- 306
               RR+ EA     +M     VP+    + L++  CK   ++ A               
Sbjct: 401 ---ARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGE 457

Query: 307 ----LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
               +E+ + M  KG  P+  TY + +R    ++ +D AI    KM +     P   +YT
Sbjct: 458 PDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCA-PGLVTYT 516

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
            +I   C A    +A      +V  G  P+  T + +   L  A    LL   +R+RI
Sbjct: 517 LLIGEACSADMADDAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGYQDLL---VRQRI 571



 Score = 45.1 bits (105), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
            GE+    SV   +  + + G  +EA+    +M     RPD   Y  V+ +LC +   + 
Sbjct: 436 QGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDS 495

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A    E+M   G  C P + TYT+LI   C   M             +A  +F  M+  G
Sbjct: 496 AIAEFEKMASRG--CAPGLVTYTLLIGEACSADMAD-----------DAFRIFEAMVAAG 542

Query: 283 FVP 285
           F P
Sbjct: 543 FTP 545


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 15/248 (6%)

Query: 134  TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
            T K + + + R  NV     ++ +M  RG   +V  +++T +I    E+ LVN A+  F+
Sbjct: 833  TYKYIIVGYCRNGNVLEADRWICEMMERGF--VVDNATLTLIITAFCEKSLVNRAVWFFH 890

Query: 194  RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            ++ +    P++  Y+ +I+ LC+ G+  +A  LLE+M   G++  P+VYT+T LI   CK
Sbjct: 891  KVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWK--PNVYTHTSLIHGLCK 948

Query: 254  YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
             G      +A R          +L+    + P+V  Y  +I G CK  ++ RA  LF+ M
Sbjct: 949  KGWT---ERAFRL-------FLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERM 998

Query: 314  NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
             ++G +PN  TY + I  +       KA E+M  M N     P + +Y  I+  LC+ GR
Sbjct: 999  KEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGF-FPNTCTYNSIVDGLCKRGR 1057

Query: 374  VLEARDFL 381
              EA   L
Sbjct: 1058 AEEAFKLL 1065



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 119/263 (45%), Gaps = 17/263 (6%)

Query: 141  VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            VFA    +K   D + DM  R  G ++TT  +  +I V  E  LV  A   F  M     
Sbjct: 770  VFAEIGKLKEAVDMILDM--RNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGV 827

Query: 201  RPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             PD   Y  +I   CR GN  +A R++ E ME  GF    D  T T++I+++C+      
Sbjct: 828  YPDSCTYKYIIVGYCRNGNVLEADRWICEMME-RGFVV--DNATLTLIITAFCE------ 878

Query: 260  CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
             +  + R +W     F  +   G  P+++ Y+ +I G CK   +++A EL ++M K G  
Sbjct: 879  -KSLVNRAVW----FFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWK 933

Query: 320  PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
            PN  T+ S I         ++A  +  K+   ++  P   +YT +I   C+  ++  A  
Sbjct: 934  PNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEM 993

Query: 380  FLAELVDGGSVPREYTYKLVCDA 402
                + + G VP   TY  + D 
Sbjct: 994  LFERMKEQGLVPNTNTYTTLIDG 1016



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 125/305 (40%), Gaps = 33/305 (10%)

Query: 144  RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
            +  N    ++ ++ MS  G      T +   ++  L + G   EA        Q +   D
Sbjct: 1019 KAGNFSKAYELMELMSNEGF--FPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEAD 1076

Query: 204  VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
               Y ++I+  C+  + N+A   L +M   GF+  PD++ YT LI+++C+  M     K 
Sbjct: 1077 GVTYTILISEQCKRADMNQALVFLNKMFKVGFQ--PDIHLYTTLIAAFCRQNMMKDSEKL 1134

Query: 264  I------------------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
                                      +++  A   F+ M   G  PD ++Y  LI G CK
Sbjct: 1135 FDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCK 1194

Query: 300  TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
              R++ A +L+D M  KG  P  VT  +    Y    +   A+ ++ +   LN  +   +
Sbjct: 1195 ESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILER---LNKKLWIRT 1251

Query: 360  SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
             +T +I  LC   +V  A  F  +L+D        T      A   + + +L+ D L +R
Sbjct: 1252 VHT-LIRKLCCEKKVALAALFFHKLLDKEVNVDRVTLAAFNTACIESNKYALVSD-LSER 1309

Query: 420  IRDGI 424
            I  GI
Sbjct: 1310 ISKGI 1314


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 14/217 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M     +PDVY Y+V+IN LC+    + A  L ++M + G    P+  
Sbjct: 173 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--VPNGV 230

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +  +PD++ YN LI G CK   
Sbjct: 231 TFTTLIDGHCKNG-----------RVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGD 279

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       ++D A E  ++M   N  +    +YT
Sbjct: 280 LKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLD-DVAYT 338

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +I  LC+ GR ++A   L E++  G  P   TY ++
Sbjct: 339 ALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMI 375



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+  +   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 124 LYFFNILMHRFCKERDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 173

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 174 ------DLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP 227

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A 
Sbjct: 228 NGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSL---LPDLITYNTLIYGLCKKGDLKQAH 284

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 285 DLIDEMSMKGLKPDKITYTALIDG 308



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 15/178 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ AL  + +M      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 231 TFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 290

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
            + G +  PD  TYT LI   CK G + T      R+R+ + N   RL        D VA
Sbjct: 291 SMKGLK--PDKITYTALIDGCCKEGDLDTAFEH--RKRMIQEN--IRL--------DDVA 336

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           Y  LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++
Sbjct: 337 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKE 394



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +  ++K   D + +MS +G      T   T LI    +EG ++ A     RM Q   R
Sbjct: 274 LCKKGDLKQAHDLIDEMSMKGLKPDKIT--YTALIDGCCKEGDLDTAFEHRKRMIQENIR 331

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
            D  AY  +I+ LC+ G    A  +L +M   G +  PD  TYT++I+ +CK G
Sbjct: 332 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PDARTYTMIINEFCKKG 383


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 107/236 (45%), Gaps = 27/236 (11%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
             A    M++    P++Y YN ++   CR G F  AR L ++M L G     +V +Y IL
Sbjct: 92  GFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGV--VRNVVSYNIL 149

Query: 248 ISSYCKYGMQTGCRK---AIRR---------------------RIWEANHLFRLMLFKGF 283
           I+  C++G      +   A+RR                     ++  A H F  M   G 
Sbjct: 150 IAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGL 209

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P VV YN LI G C+   I  A+  F DM ++   P +VTY   I  ++  NE+D+A E
Sbjct: 210 QPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFE 269

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           M+ +M+     V    SY  ++HALC  G+++ AR     +   G  P    Y ++
Sbjct: 270 MLSEMEKAGLEVDV-QSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMM 324



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 109/261 (41%), Gaps = 20/261 (7%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCR 201
           R   +K      + M R G    +  S VT   LI   G+ G ++ AL  F +MK    +
Sbjct: 155 RHGKLKDAAQLFEAMRREG----IHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQ 210

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P V  YN +I   CR  +   A      M+    R  P   TYTILI ++ K        
Sbjct: 211 PSVVTYNELIGGFCRARDIAHAIRAFSDMKER--RLAPTKVTYTILIGAFAK-------- 260

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 +  A  +   M   G   DV +Y  L+   C   ++  A +LF  M+ KG  PN
Sbjct: 261 ---ENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPN 317

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            V Y+  I  Y       KA+ ++ +M+  +  +P  +SY   I  LC  G+  EA   +
Sbjct: 318 NVLYDMMIYGYGREGSSYKALRLIMEMRK-SGLIPNVASYCLTIRLLCNEGKCQEAEALI 376

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            ++ D G    E   +++ DA
Sbjct: 377 GDMEDAGLQTSESICRVLFDA 397



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 15/278 (5%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           V+     L   ++ G+  L   ++ T L+    + G V EA   F  M +    P+   Y
Sbjct: 18  VRSALAVLARGTKSGDAAL-DVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTY 76

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
             +I+     G       L+ +M   G    P++YTY  L+  +C+ G            
Sbjct: 77  TALIHGYFVRGQREMGFALVGEMRRGGVE--PNLYTYNCLVGEWCRTG-----------E 123

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
              A  LF  M  KG V +VV+YN LI G C+  +++ A +LF+ M ++G  P+ VT+N 
Sbjct: 124 FKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNL 183

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I  Y    ++  A+    +M+      P+  +Y  +I   C A  +  A    +++ + 
Sbjct: 184 LIDGYGKAGKMSNALHFFNQMKAAGL-QPSVVTYNELIGGFCRARDIAHAIRAFSDMKER 242

Query: 388 GSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
              P + TY ++  A     E     + L +  + G+E
Sbjct: 243 RLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLE 280


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 126/291 (43%), Gaps = 35/291 (12%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
              +   V+    F   M  RG    + T ++  L+    + G ++ AL  F  MK+   
Sbjct: 144 ALGKAGRVQEARSFFDAMLERGLTPNIPTYNL--LMDAFRKVGQLDMALGLFAEMKRRGF 201

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P V  YN++++ALC  G    AR L  +M   G  C PD YTY+ L++   K G     
Sbjct: 202 QPSVVTYNILLDALCSAGRVGAARKLFHKMTGDG--CSPDSYTYSTLVNGLGKSGRVEEA 259

Query: 261 RKAIRR---------------------------RIWEANHLFRLMLFKGFVPDVVAYNCL 293
            K  R                            R+W+   L + M  KGF PD  ++N +
Sbjct: 260 HKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWK---LMKEMSRKGFHPDAFSFNTI 316

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +D   K  + + A E+F  M + GC P+ ++YN  I  Y+   +  +A +M+ +M     
Sbjct: 317 MDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGF 376

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
            +P + +Y  +IH L   G+V EA   L E+   G  P   TY  + D L 
Sbjct: 377 -IPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLG 426



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 14/221 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LI +L   G    A   + ++ Q  C+ D +AYNV+I    R G  + A  + 
Sbjct: 64  TVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMF 123

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            +M++ G    PD YTY  L+++  K G           R+ EA   F  ML +G  P++
Sbjct: 124 REMKIKG--SEPDEYTYGFLVNALGKAG-----------RVQEARSFFDAMLERGLTPNI 170

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             YN L+D   K  +++ AL LF +M ++G  P+ VTYN  +        +  A ++  K
Sbjct: 171 PTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHK 230

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           M   +   P S +Y+ +++ L ++GRV EA     E+VD G
Sbjct: 231 MTG-DGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRG 270



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 121/267 (45%), Gaps = 16/267 (5%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M +V A    +  L   LK+M     G  +  +++  LI   G      +A   F + + 
Sbjct: 1   MLVVLASWGILDPLETLLKEMV--AEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAES 58

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
           F C P V+A+  +I+ L   G F +A  + +++   G  C  D + Y +LI  + + G  
Sbjct: 59  FACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKG--CQLDRFAYNVLIRYFGRSG-- 114

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    ++  A  +FR M  KG  PD   Y  L++   K  R++ A   FD M ++G
Sbjct: 115 ---------QLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERG 165

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             PN  TYN  +  +  V ++D A+ +  +M+      P+  +Y  ++ ALC AGRV  A
Sbjct: 166 LTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGF-QPSVVTYNILLDALCSAGRVGAA 224

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALN 404
           R    ++   G  P  YTY  + + L 
Sbjct: 225 RKLFHKMTGDGCSPDSYTYSTLVNGLG 251



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 16/237 (6%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            LI+  G  G ++ A+  F  MK     PD Y Y  ++NAL + G   +AR   + M   
Sbjct: 105 VLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLER 164

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P++ TY +L+ ++ K G           ++  A  LF  M  +GF P VV YN L
Sbjct: 165 GL--TPNIPTYNLLMDAFRKVG-----------QLDMALGLFAEMKRRGFQPSVVTYNIL 211

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +D  C   R+  A +LF  M   GC P+  TY++ +        +++A ++ R+M  ++ 
Sbjct: 212 LDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREM--VDR 269

Query: 354 GVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
           GV     +Y  ++  L +AG +      + E+   G  P  +++  + DAL  A +P
Sbjct: 270 GVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKP 326



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 115/240 (47%), Gaps = 19/240 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
             A+  N+  +W  +K+MSR+G        S   ++  LG+    + A   F RM +  C
Sbjct: 284 TLAKAGNMDRVWKLMKEMSRKGFHP--DAFSFNTIMDALGKANKPDAAREVFARMVESGC 341

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PD+ +YN++I++  R G+  +AR +LE+M   GF   P+  TY  LI      G     
Sbjct: 342 KPDLISYNILIDSYARFGDAAQARQMLEEMVEAGF--IPETKTYNSLIHWLATDG----- 394

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA  +   M   G  PDVV YN L+D   K    +RA  LF  M  KG  P
Sbjct: 395 ------QVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEP 448

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRV-LEAR 378
           + ++Y   I   +  + +D+A+ + + M+ +  G P   + Y  +I A   AG   LEA+
Sbjct: 449 DTLSYAVRIDGLAFDDRLDEALVLFKDMKAV--GCPVDKAMYRILIRAAHRAGDTELEAQ 506


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 128/266 (48%), Gaps = 18/266 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           F KDM   G    V T ++  +I  L +EG +  A + F +MK+    PD+  YN +I+ 
Sbjct: 242 FFKDMGAAGIKRSVFTYNI--MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDG 299

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
             ++G  ++   + EQM+     C PDV TY  LI+ +CK+            R+ +A  
Sbjct: 300 HGKLGLLDECICIFEQMK--DADCDPDVITYNALINCFCKF-----------ERMPKAFE 346

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
               M   G  P+VV Y+  ID  CK   ++ A++ F DM +    PN  TY S I    
Sbjct: 347 FLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANC 406

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               + +A++++ ++  L  G+  +  +YT ++  LCE GR+ EA +    +++ G  P 
Sbjct: 407 KAGNLAEALKLVEEI--LQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPN 464

Query: 393 EYTYKLVCDALNAAEEPSLLDDGLRK 418
           + TY  +      A+E     D L++
Sbjct: 465 QETYTALVHGFIKAKEMEYAKDILKE 490



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 120/251 (47%), Gaps = 18/251 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L   L E G++ EA   F +M++FR  P   + N +++ L +VG  + +R   + M   G
Sbjct: 191 LFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAG 250

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +    V+TY I+I   CK G            +  A  LF  M   GF PD+V YN LI
Sbjct: 251 IK--RSVFTYNIMIDYLCKEG-----------DLEMARSLFTQMKEAGFTPDIVTYNSLI 297

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K   ++  + +F+ M    C P+ +TYN+ I  +     + KA E + +M+  N  
Sbjct: 298 DGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKA-NGL 356

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPS 410
            P   +Y+  I A C+ G + EA  F  ++      P E+TY  +    C A N AE   
Sbjct: 357 KPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALK 416

Query: 411 LLDDGLRKRIR 421
           L+++ L+  I+
Sbjct: 417 LVEEILQAGIK 427



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 129/280 (46%), Gaps = 34/280 (12%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           ++VT +S   LI   G+ GL++E +  F +MK   C PDV  YN +IN  C+     KA 
Sbjct: 289 DIVTYNS---LIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAF 345

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK---AIRR--------------- 266
             L +M+  G +  P+V TY+  I ++CK GM     K    +RR               
Sbjct: 346 EFLHEMKANGLK--PNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLID 403

Query: 267 ------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  + EA  L   +L  G   +VV Y  L+DG C+  R++ A E+F  M   G  P
Sbjct: 404 ANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAP 463

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N+ TY + +  +    E++ A +++++M+      P    Y  I+  LC   R+ EA+  
Sbjct: 464 NQETYTALVHGFIKAKEMEYAKDILKEMKE-KCIKPDLLLYGTILWGLCNESRLEEAKLL 522

Query: 381 LAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGL 416
           + E+ + G       Y  + DA      A E  +LL++ L
Sbjct: 523 IGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEML 562



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 128/255 (50%), Gaps = 22/255 (8%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           ++FL +M   G    V T S    I    +EG++ EA+  F  M++    P+ + Y  +I
Sbjct: 345 FEFLHEMKANGLKPNVVTYST--FIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLI 402

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           +A C+ GN  +A  L+E++   G +   +V TYT L+   C+ G           R+ EA
Sbjct: 403 DANCKAGNLAEALKLVEEILQAGIKL--NVVTYTALLDGLCEEG-----------RMKEA 449

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +FR ML  G  P+   Y  L+ G  K   +E A ++  +M +K   P+ + Y + +  
Sbjct: 450 EEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL-- 507

Query: 332 YSVVNE--IDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGG 388
           + + NE  +++A  ++ +++    G+ T++  YT ++ A  ++G+  EA   L E++D G
Sbjct: 508 WGLCNESRLEEAKLLIGEIK--ESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLG 565

Query: 389 SVPREYTYKLVCDAL 403
            +  E TY  + D L
Sbjct: 566 LIATEVTYCALIDGL 580



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 107/228 (46%), Gaps = 25/228 (10%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC-LIKVLGEEGLVNEALATFYRMK 196
           M   F  G   + L   L++M   G   L+ T    C LI  L + GLV EA+  F RM 
Sbjct: 542 MDAYFKSGQATEAL-TLLEEMLDLG---LIATEVTYCALIDGLCKSGLVQEAMHHFGRMS 597

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
           +   +P+V  Y  +++ LC+   F  A+ L ++M   G    PD   YT LI    K+G 
Sbjct: 598 EIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMM--PDKIAYTALIDGNMKHG- 654

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                      + EA +L   M+  G   D+ AY  LI G   + ++++A  L D+M  K
Sbjct: 655 ----------NLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGK 704

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN-------LNHGVPT 357
           G +P+ V Y   I+ Y  + ++D+A+E+  +M          +H VP+
Sbjct: 705 GVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMITGLSDHAVPS 752



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 109/244 (44%), Gaps = 17/244 (6%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L  E  + EA      +K+     +   Y  +++A  + G   +A  LLE+M   G    
Sbjct: 510 LCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIAT 569

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
               TY  LI   CK G+           + EA H F  M   G  P+V  Y  L+DG C
Sbjct: 570 E--VTYCALIDGLCKSGL-----------VQEAMHHFGRMSEIGLQPNVAVYTALVDGLC 616

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K    E A +LFD+M  KG +P+++ Y + I        + +A+ +  +M  +   +   
Sbjct: 617 KNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDL- 675

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD---ALNAAEEPSLLDDG 415
            +YT +I  L  +G+V +AR+ L E++  G +P E  Y  +     AL   +E   L + 
Sbjct: 676 HAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNE 735

Query: 416 LRKR 419
           + KR
Sbjct: 736 MAKR 739



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 96/227 (42%), Gaps = 18/227 (7%)

Query: 167 VTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           + T++V  T L+    + G   EAL     M           Y  +I+ LC+ G   +A 
Sbjct: 531 INTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAM 590

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
               +M   G +  P+V  YT L+   CK      C +        A  LF  ML KG +
Sbjct: 591 HHFGRMSEIGLQ--PNVAVYTALVDGLCK----NNCFEV-------AKKLFDEMLDKGMM 637

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           PD +AY  LIDG  K   ++ AL L D M + G   +   Y + I   S   ++ KA  +
Sbjct: 638 PDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNL 697

Query: 345 MRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
           + +M  +  GV P    Y  +I      G+V EA +   E+   G +
Sbjct: 698 LDEM--IGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMI 742


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 121/255 (47%), Gaps = 22/255 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+ L E    N+AL  F++M   + +PD + Y VVI  LC++   + A    EQM   G
Sbjct: 20  LIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFEQMVQSG 79

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH-LFRLMLFKGFVPDVVAYNCL 293
             C PD  TYT+L+ S  K      C+       WE  H +F  ML KG  P++V Y  +
Sbjct: 80  --CLPDKVTYTVLVHSLFK-----ACK-------WEQGHQIFEEMLSKGHSPELVTYATV 125

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ++G CK  RI++AL L   +   G  P+   Y++ I      +  ++A E+         
Sbjct: 126 VNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFEMAAG--- 182

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEP 409
            V     YT  I  LC+AG++ EA+    ++++ G  P   +Y ++    C     +E  
Sbjct: 183 DVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAK 242

Query: 410 SLLDDGLRKRIRDGI 424
            L+D  + ++   G+
Sbjct: 243 ELMDQAMERKCMPGV 257



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 19/219 (8%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ-ME 231
           T  I  L + G ++EA A   +M +  C PD  +YNV+I +LC+    ++A+ L++Q ME
Sbjct: 191 TSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAME 250

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAY 290
               +C P V   T+L+   CK            RR+ EA  +   ML  G   P VV Y
Sbjct: 251 R---KCMPGVPVCTVLVDGLCK-----------SRRVEEACVILERMLEAGDRAPSVVTY 296

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           + +IDG CK  R++ A  +   M + GC+P+ VTY + I  +  V  +D+A E+ ++M  
Sbjct: 297 SAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMH- 355

Query: 351 LNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              G  +   +Y  +I   C A +V EA   + E+   G
Sbjct: 356 -ERGCASDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRG 393



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 114/254 (44%), Gaps = 18/254 (7%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           +G   F + +S+  + ELVT ++V   +    + G +++AL+   R+K     P    Y+
Sbjct: 102 QGHQIFEEMLSKGHSPELVTYATV---VNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYS 158

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
            +I+ LC+     +AR L E           DV  YT  IS  CK G           ++
Sbjct: 159 TLIDGLCKHDRHEEARELFEMAAGD----VQDVIVYTSFISGLCKAG-----------KL 203

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            EA  +   M+  G  PD V+YN +I   CK  R+  A EL D   ++ C+P        
Sbjct: 204 DEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVL 263

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +        +++A  ++ +M       P+  +Y+ +I  LC+A R+ +A   L ++   G
Sbjct: 264 VDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAG 323

Query: 389 SVPREYTYKLVCDA 402
            VP   TY  + DA
Sbjct: 324 CVPDVVTYTAIIDA 337



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 19/217 (8%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           DV  Y   I+ LC+ G  ++A+ +  +M   G  C PD  +Y ++I S CK         
Sbjct: 186 DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAG--CAPDPVSYNVIIYSLCK--------- 234

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC-IPN 321
               R+ EA  L    + +  +P V     L+DG CK+ R+E A  + + M + G   P+
Sbjct: 235 --DNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPS 292

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VTY++ I      + +D A  +++KM+     VP   +YT II A C+ GR+ EAR+  
Sbjct: 293 VVTYSAVIDGLCKADRLDDAYIVLQKMRRAG-CVPDVVTYTAIIDAFCKVGRLDEARELF 351

Query: 382 AELVDGGSVPREYTYKLV----CDALNAAEEPSLLDD 414
             + + G       Y ++    C A    E  +++++
Sbjct: 352 QRMHERGCASDVVAYNILIRGYCRAAKVDEAIAMIEE 388



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           L  +M   G  P  VT+ S IR    +N  +KA+++  +M ++    P +  YT +I  L
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVK-PDAFLYTVVIGHL 59

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           C+  ++  A  +  ++V  G +P + TY ++  +L
Sbjct: 60  CKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSL 94


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 130/304 (42%), Gaps = 82/304 (26%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T++ T LI+ L  EG + +AL  F +M     +P+V  Y  +IN LC+VGN N A  LL 
Sbjct: 137 TATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLR 196

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            ME     C PDV  YT +I S CK            R++ EA +LF  M+ +G  PD+ 
Sbjct: 197 SMEQG--NCQPDVVVYTSIIDSLCK-----------DRQVTEAFNLFSKMVGQGISPDIF 243

Query: 289 AYNCLI-----------------------------------DGCCKTYRIERALELFDDM 313
            Y  LI                                   D  CK  +I  A ++ D M
Sbjct: 244 TYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMM 303

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR----------------------KMQNL 351
             +G  PN VTYN+ +  + + +E+D+A+++                        K+Q +
Sbjct: 304 IIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRM 363

Query: 352 NHG------------VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           +              +P + +Y  ++H LC  GR+ +A     E+V  G +P   TY+++
Sbjct: 364 DKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRIL 423

Query: 400 CDAL 403
            D L
Sbjct: 424 LDYL 427



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 118/237 (49%), Gaps = 24/237 (10%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M   +  PDV  ++ V++ALC+ G   +A  +++ M + G    P+V TY  L+  +C 
Sbjct: 267 QMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVE--PNVVTYNALMDGHC- 323

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                     ++  + EA  +F  M+  G+ P+V++YN LI+G CK  R+++A  LF++M
Sbjct: 324 ----------LQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEM 373

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAG 372
            +K  IPN VTYN+ +     V  +  AI +  +M  + HG +P  ++Y  ++  LC+  
Sbjct: 374 CQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEM--VAHGQIPDLATYRILLDYLCKKS 431

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE--------PSLLDDGLRKRIR 421
            + EA   L  +      P    Y +V D +  A E         +L   GLR  +R
Sbjct: 432 HLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVR 488



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 117/266 (43%), Gaps = 29/266 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL++F RM      P    +N ++ ++ +   +     L  QM+   F  PPDVYT 
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMD--SFGIPPDVYTL 105

Query: 245 TILISSYC----------------KYGMQTGCRK--------AIRRRIWEANHLFRLMLF 280
            ILI+S+C                K G+Q              +  +I +A HLF  M+ 
Sbjct: 106 NILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 165

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +GF P+VV Y  LI+G CK      A+ L   M +  C P+ V Y S I       ++ +
Sbjct: 166 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 225

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A  +  KM  +  G+ P   +YT +IH+LC           L ++++   +P    +  V
Sbjct: 226 AFNLFSKM--VGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTV 283

Query: 400 CDALNAAEEPSLLDDGLRKRIRDGIE 425
            DAL    + +   D +   I  G+E
Sbjct: 284 VDALCKEGKITEAHDVVDMMIIRGVE 309



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 16/218 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   L+  L   G + +A+A F+ M      PD+  Y ++++ LC+  + ++A  LL+
Sbjct: 382 TVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLK 441

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            +E  G    PD+  YTI+I   C+ G            +  A  +F  +  KG  P+V 
Sbjct: 442 TIE--GSNMDPDIQIYTIVIDGMCRAG-----------ELEAARDIFSNLSSKGLRPNVR 488

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  +I+G C+   ++ A +LF +M+  GC P+  TYN+  +      E  +AI+++++M
Sbjct: 489 TYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEM 548

Query: 349 QNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELV 385
             L  G     S+ T ++  LC+       +  L+E V
Sbjct: 549 --LARGFSADVSTTTLLVEMLCDDKLDQSVKQILSEFV 584



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 22/228 (9%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---ELPGFRCPPDV 241
           ++EA+  F  M      P+V +YN +IN  C++   +KA +L E+M   EL      P+ 
Sbjct: 328 MDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKEL-----IPNT 382

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            TY  L+   C  G           R+ +A  LF  M+  G +PD+  Y  L+D  CK  
Sbjct: 383 VTYNTLMHGLCHVG-----------RLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKS 431

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
            ++ A+ L   +      P+   Y   I       E++ A ++   +   + G+ P   +
Sbjct: 432 HLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLS--SKGLRPNVRT 489

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           YT +I+ LC  G + EA     E+   G  P   TY  +   L   +E
Sbjct: 490 YTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKE 537



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 14/219 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A   F  M Q    P+   YN +++ LC VG    A  L  +M   G    PD+ TY
Sbjct: 363 MDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQI--PDLATY 420

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            IL+   CK           +  + EA  L + +      PD+  Y  +IDG C+   +E
Sbjct: 421 RILLDYLCK-----------KSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELE 469

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A ++F +++ KG  PN  TY   I        +D+A ++  +M   N   P   +Y  I
Sbjct: 470 AARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDG-NGCSPDGCTYNTI 528

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              L +    L A   L E++  G      T  L+ + L
Sbjct: 529 TQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEML 567



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 13/156 (8%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
            +G++   ++   L+  L ++  ++EA+A    ++     PD+  Y +VI+ +CR G   
Sbjct: 410 AHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELE 469

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
            AR +   +   G R  P+V TYTI+I+  C+ G+           + EAN LF  M   
Sbjct: 470 AARDIFSNLSSKGLR--PNVRTYTIMINGLCRRGL-----------LDEANKLFMEMDGN 516

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
           G  PD   YN +  G  +     RA++L  +M  +G
Sbjct: 517 GCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARG 552


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 34/255 (13%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           S T LI  L + G V+ A   F +M     CRP+ + YN +++ LC+    + AR ++ +
Sbjct: 48  SYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAE 107

Query: 230 MELPGFRCPPDVYTYTILISSYCKYG--------------------------MQTGCRKA 263
                F   PDV TY  L+++  + G                          + TG  +A
Sbjct: 108 ARKRDF--APDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRA 165

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
             RR+ +A  +F  M+ + F P++V Y+ +IDG CK+ +++ A +L D M  +GC P+ V
Sbjct: 166 --RRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLV 223

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLA 382
            Y   +  +S    +D A+ ++R+M  ++ G +P   +YT +I  LC+ GRV +A +   
Sbjct: 224 AYTPLVLGFSAAGRLDSALGLLRRM--VSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFR 281

Query: 383 ELVDGGSVPREYTYK 397
           ELV     P   TY 
Sbjct: 282 ELVANKCSPNVVTYS 296



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 123/259 (47%), Gaps = 29/259 (11%)

Query: 171 SVTCLIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           + + +++ L   G V +AL  F   ++    +PDV +Y  +IN LC++G  + A  L  +
Sbjct: 12  TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRK 71

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR----------------------- 266
           M   G  C P+ +TY  L+   CK       R  I                         
Sbjct: 72  MVAAG-GCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQL 130

Query: 267 -RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            R+ EA   F  M  +G+VP +V++N +I G C+  R+  ALE+F++M  +   PN VTY
Sbjct: 131 GRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTY 190

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           +  I      +++D+A +++ +M  ++ G  P   +YTP++     AGR+  A   L  +
Sbjct: 191 SVVIDGLCKSDQLDEAQQLLDRM--VSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRM 248

Query: 385 VDGGSVPREYTYKLVCDAL 403
           V  G +P   TY +V D L
Sbjct: 249 VSQGCIPDVVTYTVVIDKL 267



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 117/246 (47%), Gaps = 17/246 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + T  S   +I  L     + +AL  F  M      P++  Y+VVI+ LC+    ++A
Sbjct: 147 GYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEA 206

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           + LL++M   G  C PD+  YT L+  +   G           R+  A  L R M+ +G 
Sbjct: 207 QQLLDRMVSEG--CRPDLVAYTPLVLGFSAAG-----------RLDSALGLLRRMVSQGC 253

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           +PDVV Y  +ID  CK  R++ A E+F ++    C PN VTY++ I  Y   + +D+  +
Sbjct: 254 IPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGK 313

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +MR+M       P   +Y  +I  L    R  EA     E+ + G VP   TY+ +  AL
Sbjct: 314 VMREMACR----PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRAL 369

Query: 404 NAAEEP 409
              + P
Sbjct: 370 RMIDHP 375



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 99/204 (48%), Gaps = 18/204 (8%)

Query: 208 NVVINALCRVGNFNKARFLLEQME--LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           ++++  LCR G   +A   LE  +  L      PDV +YT LI+  CK G          
Sbjct: 14  SIILQGLCRCGRVAQA---LEHFDASLELAHAQPDVVSYTTLINGLCKLG---------- 60

Query: 266 RRIWEANHLFRLMLFKGFV-PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
            R+  A  LFR M+  G   P+   YN L+DG CK  R++ A  +  +  K+   P+ VT
Sbjct: 61  -RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVT 119

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YN+ +     +  +D+A+    +M    + VPT  S+  II  LC A R+ +A +   E+
Sbjct: 120 YNTLMAALFQLGRVDEALATFTQMTEEGY-VPTLVSFNAIITGLCRARRLADALEVFNEM 178

Query: 385 VDGGSVPREYTYKLVCDALNAAEE 408
           +D    P   TY +V D L  +++
Sbjct: 179 IDRDFHPNLVTYSVVIDGLCKSDQ 202



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           M+ +G   N  T +  ++       + +A+E       L H  P   SYT +I+ LC+ G
Sbjct: 1   MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG 60

Query: 373 RVLEARDFLAELV-DGGSVPREYTYKLVCDAL 403
           RV  A D   ++V  GG  P  +TY  + D L
Sbjct: 61  RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGL 92


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 131/279 (46%), Gaps = 21/279 (7%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
           FY   E+ FD      TC  +  + +R N ++  W F  DM R      V T ++  +I 
Sbjct: 179 FYLMKEKGFD--PKTETCNHILSLLSRLNRIENAWVFYADMYRMEIKSNVYTFNI--MIN 234

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
           VL +EG + +A      M+ F  +P +  YN ++      G    AR ++ +M+  GF+ 
Sbjct: 235 VLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQ- 293

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            PD+ TY  ++S  C  G               A+ + R M   G VPD V+YN LI GC
Sbjct: 294 -PDLQTYNPILSWMCNEG--------------RASEVLREMKGIGLVPDSVSYNILIRGC 338

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
                +E A    D+M K+G +P   TYN+ I    + N+I+ A  ++R+++     V  
Sbjct: 339 SNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIRE-KGIVLD 397

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           S +Y  +I+  C+ G   +A     E++  G  P ++TY
Sbjct: 398 SVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTY 436



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 108/223 (48%), Gaps = 16/223 (7%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D   YN+VIN  C+ G+  KA  L ++M   G +  P  +TYT LI   C+         
Sbjct: 397 DSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIK--PTQFTYTSLIYVLCR--------- 445

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
             R +  EA+ LF  ++ KG  PD+V  N L+DG C T  ++RA  L  +M++    P+ 
Sbjct: 446 --RNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDD 503

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           VTYN  +R      + ++A E+M +M+    G+ P   SY  +I    + G    A    
Sbjct: 504 VTYNCLMRGLCGEGKFEEARELMGEMK--RRGIKPDHISYNTLISGYSKKGDTKHAFIVR 561

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
            E++  G  P   TY  +   L+  ++  L ++ LR+   +GI
Sbjct: 562 DEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGI 604



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 70/154 (45%), Gaps = 19/154 (12%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++ A +    M +    PD   YN ++  LC  G F +AR L+ +M+  G +  PD  
Sbjct: 482 GNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIK--PDHI 539

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCK 299
           +Y  LIS Y K G              +  H F +   ML  GF P ++ YN L+ G  K
Sbjct: 540 SYNTLISGYSKKG--------------DTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSK 585

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
               E A EL  +M  +G +PN  ++ S I   S
Sbjct: 586 NQDGELAEELLREMKSEGIVPNDSSFCSVIEAMS 619



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 39/169 (23%)

Query: 266 RRIWEANHLFRLMLFKGFVP-----------------------------------DVVAY 290
           R + EA   F LM  KGF P                                   +V  +
Sbjct: 170 RMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYADMYRMEIKSNVYTF 229

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N +I+  CK  ++++A      M   G  P  VTYN+ ++ YS+   I+ A  ++ +M++
Sbjct: 230 NIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKS 289

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
                P   +Y PI+  +C  GR   A + L E+   G VP   +Y ++
Sbjct: 290 KGFQ-PDLQTYNPILSWMCNEGR---ASEVLREMKGIGLVPDSVSYNIL 334


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 127/248 (51%), Gaps = 29/248 (11%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG +++A   F  + +   +P V ++N +IN  C+VGN ++   L  QME    R  PD
Sbjct: 252 KEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKS--RTRPD 309

Query: 241 VYTYTILISSYCKYGMQTG--------CRKAI-------------RRRIWEANHL---FR 276
           V+TY+ LI++ CK     G        C++ +               R  E + +   ++
Sbjct: 310 VFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQ 369

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            ML KG  PD+V YN L++G CK   +  A  + D M ++G  P+++TY + I  +    
Sbjct: 370 KMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGG 429

Query: 337 EIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
           +++ A+E+ ++M    +G+      ++ ++  +C+ GRV++A   L E++  G  P + T
Sbjct: 430 DVETALEIRKEMD--QNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487

Query: 396 YKLVCDAL 403
           Y ++ DA 
Sbjct: 488 YTMMMDAF 495



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 119/258 (46%), Gaps = 18/258 (6%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           N + G      +M +RG   L+    + T LI      G ++    ++ +M     +PD+
Sbjct: 324 NKMDGAHGLFDEMCKRG---LIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDI 380

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             YN ++N  C+ G+   AR +++ M   G R  PD  TYT LI  +C+ G         
Sbjct: 381 VLYNTLVNGFCKNGDLVAARNIVDGMIRRGLR--PDKITYTTLIDGFCRGG--------- 429

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              +  A  + + M   G   D V ++ L+ G CK  R+  A     +M + G  P+ VT
Sbjct: 430 --DVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y   +  +    +     +++++MQ+  H VP+  +Y  +++ LC+ G++  A   L  +
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQSDGH-VPSVVTYNVLLNGLCKLGQMKNADMLLDAM 546

Query: 385 VDGGSVPREYTYKLVCDA 402
           ++ G VP + TY  + + 
Sbjct: 547 LNIGVVPDDITYNTLLEG 564



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 16/202 (7%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           +VY +N+++N  C+ GN + A+ + +++     +  P V ++  LI+ YCK G       
Sbjct: 239 NVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQ--PTVVSFNTLINGYCKVG------- 289

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                + E   L   M      PDV  Y+ LI+  CK  +++ A  LFD+M K+G IPN 
Sbjct: 290 ----NLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPND 345

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           V + + I  +S   EID   E  +KM  L+ G+ P    Y  +++  C+ G ++ AR+ +
Sbjct: 346 VIFTTLIHGHSRNGEIDLMKESYQKM--LSKGLQPDIVLYNTLVNGFCKNGDLVAARNIV 403

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
             ++  G  P + TY  + D  
Sbjct: 404 DGMIRRGLRPDKITYTTLIDGF 425



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 24/200 (12%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F RG +V+   +  K+M +  NG  +     + L+  + +EG V +A      M +   +
Sbjct: 425 FCRGGDVETALEIRKEMDQ--NGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIK 482

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   Y ++++A C+ G+      LL++M+  G    P V TY +L++  CK G      
Sbjct: 483 PDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGH--VPSVVTYNVLLNGLCKLG------ 534

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++  A+ L   ML  G VPD + YN L++G    +R   + + +    + G + +
Sbjct: 535 -----QMKNADMLLDAMLNIGVVPDDITYNTLLEG---HHRHANSSKRYIQKPEIGIVAD 586

Query: 322 RVTYNSFIRYYSVVNEIDKA 341
             +Y       S+VNE+D+A
Sbjct: 587 LASYK------SIVNELDRA 600



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 1/148 (0%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           +L  GF  +V  +N L++  CK   I  A ++FD++ K+   P  V++N+ I  Y  V  
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGN 290

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           +D+   +  +M+  +   P   +Y+ +I+ALC+  ++  A     E+   G +P +  + 
Sbjct: 291 LDEGFRLKHQMEK-SRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFT 349

Query: 398 LVCDALNAAEEPSLLDDGLRKRIRDGIE 425
            +    +   E  L+ +  +K +  G++
Sbjct: 350 TLIHGHSRNGEIDLMKESYQKMLSKGLQ 377


>gi|413921612|gb|AFW61544.1| hypothetical protein ZEAMMB73_526638 [Zea mays]
          Length = 456

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 122/273 (44%), Gaps = 29/273 (10%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           LW    DM  RG G  ++ ++ + +I   G   L ++A+  F R+ +F C      YN +
Sbjct: 128 LWSLASDM--RGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNAL 185

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQT 258
           ++ALC  GNF  A  LL +M   G    PD  T++ L+ S+C  G               
Sbjct: 186 LDALCANGNFTGAYKLLRRMARKG--VAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGR 243

Query: 259 GCRKAIRRR------IWEANHL-----FRLMLFK-GFVPDVVAYNCLIDGCCKTYRIERA 306
           G R  +R R      +  A HL     F L + K G +PDV  +N L +  C    ++ A
Sbjct: 244 GLRPPVRGRDLLVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFA 303

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
           + L  D + +G  P+  TY   +   + V +I++A  +        H  P  S Y  II 
Sbjct: 304 VSLLADASSRGLCPDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGH-RPFPSLYAAIIK 362

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           ALC+AGR  +A  F  ++   G  P    Y ++
Sbjct: 363 ALCKAGRFADAFAFFGDMKTKGHPPNRPVYVML 395



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 96/250 (38%), Gaps = 51/250 (20%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL DM+ RG    V    +  L+  L   G + +A A   RM +    PDV  +N +  A
Sbjct: 236 FLDDMAGRGLRPPVRGRDL--LVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEA 293

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC  G+ + A  LL      G  CP D+ TY +++ +  K G           +I EA  
Sbjct: 294 LCNAGDVDFAVSLLADASSRGL-CP-DISTYKVMLPAVAKVG-----------KIEEAFR 340

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF   +  G  P    Y  +I   CK  R   A   F DM  KG  PNR  Y        
Sbjct: 341 LFYAAVEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKTKGHPPNRPVY-------- 392

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
                     M+ KM                       GR +EA ++L E+ + G  PR 
Sbjct: 393 ---------VMLVKM-------------------CVRGGRFVEAANYLVEMSEAGFTPRA 424

Query: 394 YTYKLVCDAL 403
            T+  V D L
Sbjct: 425 PTFSAVVDGL 434


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 118/265 (44%), Gaps = 27/265 (10%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           WD   +M + G   ++ +++   L+  L  EG  N       +M +   +P+V  + ++I
Sbjct: 290 WDLFTEMIKLG--AVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILI 347

Query: 212 NALCRVGNFNKARFLLEQM----ELPGFRCP--PDVYTYTILISSYCKYGMQT---GCRK 262
           N +C+    + A  +LE+M    E  G      PDV  Y  LI   CK G Q    G  +
Sbjct: 348 NHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLME 407

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
            +R +             KG  PD + YNCLIDG CK   IE+  ELFD+MNK+G  PN 
Sbjct: 408 RMRSQ-------------KGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNV 454

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFL 381
           VT N+ +        +  A+    + Q    G+   + +YT +I+A C      +A +  
Sbjct: 455 VTVNTLVGGMCRTGRVSSAVNFFVEAQ--RRGMKGDAVTYTALINAFCNVNNFEKAMELF 512

Query: 382 AELVDGGSVPREYTYKLVCDALNAA 406
            E++  G  P    Y  +    + A
Sbjct: 513 NEMLKSGCSPDAIVYYTLISGFSQA 537



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 124/264 (46%), Gaps = 19/264 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   ++   +   +M++ G    V T  V  L+  +   G V+ A+  F   ++   +
Sbjct: 429 FCKAGEIEKGKELFDEMNKEGVAPNVVT--VNTLVGGMCRTGRVSSAVNFFVEAQRRGMK 486

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            D   Y  +INA C V NF KA  L  +M   G  C PD   Y  LIS + + G      
Sbjct: 487 GDAVTYTALINAFCNVNNFEKAMELFNEMLKSG--CSPDAIVYYTLISGFSQAG------ 538

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A+ +   +   G  PD V YN LI G C+T +  R  E+  +M + G  P+
Sbjct: 539 -----RMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPD 593

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDF 380
            +TYN+ I Y S   ++  A ++MRKM  +  G VPT ++Y  +I+A C  G   EA + 
Sbjct: 594 TITYNTLIAYASKNGDLKFAQKVMRKM--IKAGVVPTVATYGAVINAYCLNGNGNEAMEI 651

Query: 381 LAELVDGGSV-PREYTYKLVCDAL 403
             ++     V P    Y ++ ++L
Sbjct: 652 FKDMKAASKVPPNTVIYNILINSL 675



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 111/261 (42%), Gaps = 17/261 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           R   V    +F  +  RRG  G+ VT    T LI          +A+  F  M +  C P
Sbjct: 466 RTGRVSSAVNFFVEAQRRGMKGDAVT---YTALINAFCNVNNFEKAMELFNEMLKSGCSP 522

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D   Y  +I+   + G    A F+L +++  G R  PD   Y  LI  +C        R 
Sbjct: 523 DAIVYYTLISGFSQAGRMADASFVLAELKKLGIR--PDTVCYNTLIGGFC--------RT 572

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               R++E   + + M   G  PD + YN LI    K   ++ A ++   M K G +P  
Sbjct: 573 NKFHRVFE---MLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTV 629

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
            TY + I  Y +    ++A+E+ + M+  +   P +  Y  +I++LC+  +V  A   + 
Sbjct: 630 ATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLME 689

Query: 383 ELVDGGSVPREYTYKLVCDAL 403
           ++   G  P   TY  +   L
Sbjct: 690 DMKIWGVTPNTTTYNAIFKGL 710



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 99/234 (42%), Gaps = 30/234 (12%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G + +A      +K+   RPD   YN +I   CR   F++   +L++ME  G
Sbjct: 530 LISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAG 589

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW------------------------E 270
            +  PD  TY  LI+   K G     +K +R+ I                         E
Sbjct: 590 LK--PDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNE 647

Query: 271 ANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           A  +F+ M     VP + V YN LI+  CK  +++ A+ L +DM   G  PN  TYN+  
Sbjct: 648 AMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIF 707

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           +      +++K  E M +M  + H   P   +   +   L   G +   + F+A
Sbjct: 708 KGLRDEKDLEKVFEFMDRM--IEHACNPDYITMEILTEWLSAVGEIERLKKFVA 759



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 82/199 (41%), Gaps = 14/199 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F R N    +++ LK+M   G      T +   LI    + G +  A     +M +    
Sbjct: 569 FCRTNKFHRVFEMLKEMEEAGLKP--DTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVV 626

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P V  Y  VINA C  GN N+A  + + M+    + PP+   Y ILI+S CK        
Sbjct: 627 PTVATYGAVINAYCLNGNGNEAMEIFKDMKAAS-KVPPNTVIYNILINSLCK-------- 677

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++  A  L   M   G  P+   YN +  G      +E+  E  D M +  C P+
Sbjct: 678 ---NNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPD 734

Query: 322 RVTYNSFIRYYSVVNEIDK 340
            +T      + S V EI++
Sbjct: 735 YITMEILTEWLSAVGEIER 753



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 16/226 (7%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           +T ++ + L++  G   LV E+L  F  +       + Y  NV ++ L R G    A  +
Sbjct: 155 LTVNAASFLLRASGRSELVEESLILFNDLDP--SVKNTYLRNVWLSILLRSGRVKDALKV 212

Query: 227 LEQM--ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML---FK 281
           +++M        C P+  T  IL S   K        +     +   + +  L+L     
Sbjct: 213 IDEMFESNDDSNCRPNDATGDILFSFLLK--------RERNEELLSEDEIVNLVLKFGEH 264

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G +        LI   C+  +  R  +LF +M K G +      NS +   +     ++ 
Sbjct: 265 GVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRM 324

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            E+M KM  ++   P   ++  +I+ +C+  RV +A + L ++  G
Sbjct: 325 NELMEKMVEMDIQ-PNVVTFGILINHMCKFRRVDDALEVLEKMSGG 369


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 129/269 (47%), Gaps = 20/269 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFR 199
           V +R  ++     + +DM   G   LV  + + T LI      G+++EAL    +M +  
Sbjct: 334 VSSRNGHLDQALMYFRDMKTSG---LVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQG 390

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C  DV AYN ++N LC+      A  L ++M   G    PD  T+T LI  +CK G    
Sbjct: 391 CALDVVAYNTILNGLCKKKLLADANALFDEMVERGV--VPDFCTFTTLIHGHCKEG---- 444

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   + +A  LF +M  K   PD+V YN LIDG CKT  +E+A EL+++M  +   
Sbjct: 445 -------NMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIF 497

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           PN ++Y   +  Y  +  + +A  +  +M  +  G+ PT  +   +I   C +G + +A 
Sbjct: 498 PNHISYAILVNGYCNLGFVSEAFRLWDEM--IRKGIKPTLVTCNTVIKGYCRSGDLSKAD 555

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAE 407
           +FL +++  G  P   TY  + +     E
Sbjct: 556 EFLGKMISEGVGPDSITYNTLINGFVKGE 584



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 126/277 (45%), Gaps = 24/277 (8%)

Query: 154 FLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           FL DM ++G   ++VT ++   LI     EGL+ EA      M     +P ++ YN VIN
Sbjct: 207 FLIDMEQKGIFADIVTYNT---LINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVIN 263

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+ G + +A+ +  +M   G    PD  TY  L+   C+                EA 
Sbjct: 264 GLCKKGRYVRAKGVFNEMLSIGL--SPDTTTYNTLLVESCR-----------NNNFLEAK 310

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F  ML +G  PD+++++ LI    +   +++AL  F DM   G +P+ V Y   I  Y
Sbjct: 311 DIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGY 370

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                + +A+E+  KM  L  G      +Y  I++ LC+   + +A     E+V+ G VP
Sbjct: 371 CRNGMMSEALEIRDKM--LEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVP 428

Query: 392 REYTYKLV----CDALNAAEEPSLLDDGLRKRIRDGI 424
              T+  +    C   N  +  SL     +K I+  I
Sbjct: 429 DFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDI 465



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 16/227 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    +EG + +AL+ F  M Q   +PD+  YN++I+  C+     KA  L  +M
Sbjct: 432 TFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEM 491

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                +  P+  +Y IL++ YC  G            + EA  L+  M+ KG  P +V  
Sbjct: 492 --ISRKIFPNHISYAILVNGYCNLGF-----------VSEAFRLWDEMIRKGIKPTLVTC 538

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N +I G C++  + +A E    M  +G  P+ +TYN+ I  +     +DKA  ++ KM+ 
Sbjct: 539 NTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKME- 597

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
              G+ P   +Y  I++  C  GR+ EA   L ++++ G  P   TY
Sbjct: 598 -TKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTY 643



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 27/267 (10%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G LV+ ++   L+  L + G V+ A   +  + +     +VY  N+++NALC+    
Sbjct: 142 RRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKI 201

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG--------MQTGCRKAIRRRIW--- 269
           +  +  L  ME  G     D+ TY  LI++YC+ G        M +   K ++  ++   
Sbjct: 202 DDVKPFLIDMEQKGIF--ADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYN 259

Query: 270 -------------EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                         A  +F  ML  G  PD   YN L+   C+      A ++F DM  +
Sbjct: 260 AVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHR 319

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           G  P+ ++++S I   S    +D+A+   R M+  +  VP +  YT +I+  C  G + E
Sbjct: 320 GVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKT-SGLVPDNVIYTILINGYCRNGMMSE 378

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A +   ++++ G       Y  + + L
Sbjct: 379 ALEIRDKMLEQGCALDVVAYNTILNGL 405



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 22/173 (12%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           LWD   +M R+G    +  + VTC  +IK     G +++A     +M      PD   YN
Sbjct: 522 LWD---EMIRKG----IKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYN 574

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
            +IN   +    +KA FL+ +ME  G +  PDV TY ++++ +C+ G           R+
Sbjct: 575 TLINGFVKGEYMDKAFFLINKMETKGLQ--PDVVTYNVILNGFCRQG-----------RM 621

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
            EA  + R M+ +G  PD   Y  LI+G      ++ A    D+M ++G +P+
Sbjct: 622 QEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 13/166 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G V+EA   +  M +   +P +   N VI   CR G+ +KA   L +M   G    PD  
Sbjct: 514 GFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGV--GPDSI 571

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY  LI+ + K              + +A  L   M  KG  PDVV YN +++G C+  R
Sbjct: 572 TYNTLINGFVK-----------GEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGR 620

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           ++ A  +   M ++G  P+R TY + I  Y   + + +A     +M
Sbjct: 621 MQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEM 666



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 31/213 (14%)

Query: 237 CPPDVYTYTILISSYC---KYGMQTGCRKAIRRR-----IWEANHLFRLMLFKGFVP--- 285
           C  D   + +LI SY    K    T   K +RR+     I   N L   ++  G+V    
Sbjct: 111 CGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAW 170

Query: 286 -------------DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
                        +V   N +++  CK ++I+       DM +KG   + VTYN+ I  Y
Sbjct: 171 EVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAY 230

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                + +A E+M  M     G+ PT  +Y  +I+ LC+ GR + A+    E++  G  P
Sbjct: 231 CREGLLGEAFEVMNSMS--GKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSP 288

Query: 392 REYTYKLV----CDALNAAEEPSLLDDGLRKRI 420
              TY  +    C   N  E   +  D L + +
Sbjct: 289 DTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGV 321


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 131/292 (44%), Gaps = 45/292 (15%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +  +K+M R+G   +  TS+ + +I  L     V +A   F  MK     PDVY Y ++I
Sbjct: 273 FQLIKEMMRKGF--VPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 330

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTG 259
           ++ C+ G   +A++L E+M   G  C P V TYT LI +Y K              +  G
Sbjct: 331 DSFCKAGLIEQAQWLFEEMRSVG--CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 388

Query: 260 CR------KAIRRRIWEANHLFRLMLFKG----------------------FVPDVVAYN 291
           CR       A+   + +A ++ +                              P+VV Y 
Sbjct: 389 CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYG 448

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L+DG CK ++++ A EL D M   GC PN + Y++ I  +    +ID A E+  +M   
Sbjct: 449 ALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKC 508

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            + +P+  +YT +I  + + GR+  A   L++++     P   TY  + D L
Sbjct: 509 GY-LPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 559



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 120/277 (43%), Gaps = 26/277 (9%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G   T  + T LI    +   V +A   F+RM    CRP+   Y  +++ LC+ GN 
Sbjct: 350 RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNI 409

Query: 221 NKARFLLEQMELPG--------FRC------PPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           +KA  +  ++            F C       P+V TY  L+   CK             
Sbjct: 410 SKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK-----------AH 458

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++  A+ L   ML  G  P+ + Y+ LIDG CK  +I+ A E+F  M K G +P+  TY 
Sbjct: 459 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYT 518

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           S I        +D A++++ +M   +   P   +YT +I  LC  G   +A   L+ + +
Sbjct: 519 SLIDRMFKDGRLDLAMKVLSQMLK-DSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEE 577

Query: 387 GGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
            G  P   TY  + D L  A +  L  D   +  R G
Sbjct: 578 KGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG 614



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 16/232 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G ++ A   F +M +    P V+ Y  +I+ + + G  + A  +L QM    
Sbjct: 485 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 544

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+V TYT +I   C+ G      KA++        L  LM  KG  P+VV Y  LI
Sbjct: 545 --CTPNVVTYTAMIDGLCRIGES---EKALK--------LLSLMEEKGCSPNVVTYTALI 591

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K  +I+ +L+LF  M++KGC PN VTY   I +      +DKA  ++ +M+   + 
Sbjct: 592 DGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQ-TYW 650

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
                 Y   I    ++   + +   L E+   G+VP    Y ++ D  + A
Sbjct: 651 PKYLQGYRCAIQGFSKS--FIASLGILEEMESYGTVPIAPVYGMLIDCFSKA 700



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 25/193 (12%)

Query: 203 DVYAYNVVIN---------ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           ++ A N V+N          LC VG F+KA  L+++M   GF   PD  TY+ +I+  C 
Sbjct: 243 EMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGF--VPDTSTYSKVITFLCH 300

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        ++ +A  LF+ M   G  PDV  Y  LID  CK   IE+A  LF++M
Sbjct: 301 -----------ATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM 349

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
              GC P  VTY + I  Y    ++ +A ++  +M  ++ G  P   +Y  ++  LC+AG
Sbjct: 350 RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM--VDAGCRPNDVTYGALVDGLCKAG 407

Query: 373 RVLEARDFLAELV 385
            + +A +  A+L+
Sbjct: 408 NISKAFEVYAKLI 420



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 111/263 (42%), Gaps = 47/263 (17%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L +  + T LI  + ++G ++ A+    +M +  C P+V  Y  +I+ LCR+G   KA
Sbjct: 509 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKA 568

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LL  ME  G  C P+V TYT LI    K G           +I  +  LF  M  KG 
Sbjct: 569 LKLLSLMEEKG--CSPNVVTYTALIDGLGKAG-----------KIDLSLDLFTQMSRKGC 615

Query: 284 VPDVVAYNCLIDGCCKTYRIERA---------------------------------LELF 310
            P+ V Y  LI+  C    +++A                                 L + 
Sbjct: 616 SPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGIL 675

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALC 369
           ++M   G +P    Y   I  +S    ++ A+E+ ++M  +   V T +  Y  +I ALC
Sbjct: 676 EEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALC 735

Query: 370 EAGRVLEARDFLAELVDGGSVPR 392
            A +V EA    +E+   G VP 
Sbjct: 736 LASQVEEAFRLYSEMTRRGFVPE 758



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 97/222 (43%), Gaps = 25/222 (11%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G + K L   L  M  +G    V T   T LI  LG+ G ++ +L  F +M +  C P+ 
Sbjct: 563 GESEKAL-KLLSLMEEKGCSPNVVT--YTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 619

Query: 205 YAYNVVINALCRVGNFNKARFLLEQME-------LPGFRCPPDVYTYTILIS-------- 249
             Y V+IN LC  G  +KAR LL +M+       L G+RC    ++ + + S        
Sbjct: 620 VTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEME 679

Query: 250 SYCK------YGMQTGC-RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           SY        YGM   C  KA R  I    H   + +      D   Y  LI   C   +
Sbjct: 680 SYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQ 739

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           +E A  L+ +M ++G +P    +   I+    V + D+A+++
Sbjct: 740 VEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 127/318 (39%), Gaps = 46/318 (14%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           FA     +G W    DM  R + +L  T   T +I  L E    +EA++  +RM+   C 
Sbjct: 81  FAHALCKEGRWADALDMIEREDFKL-DTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCI 139

Query: 202 PDVYAY-----------------------------------NVVINALCRVGNFNKARFL 226
           P+V  Y                                   N ++++ C   ++  A  L
Sbjct: 140 PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 199

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE-ANHLFRLMLFKGFVP 285
           L +M   G  CPP    Y I I S C      G  K     + + A  ++  ML    V 
Sbjct: 200 LNRMTTCG--CPPGYVVYNIFIGSIC------GQEKLPSPDLLDLAEKIYGEMLAANCVL 251

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           + V         C   + ++A +L  +M +KG +P+  TY+  I +     +++KA  + 
Sbjct: 252 NKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLF 311

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           ++M+ +    P   +YT +I + C+AG + +A+    E+   G  P   TY  +  A   
Sbjct: 312 QEMKMVGV-TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLK 370

Query: 406 AEEPSLLDDGLRKRIRDG 423
           A++    +D   + +  G
Sbjct: 371 AKQVPQANDIFHRMVDAG 388



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 113/292 (38%), Gaps = 60/292 (20%)

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           K+MS   +G  +   +V C    L +EG   +AL    R + F+   D      +I+ L 
Sbjct: 64  KEMSE--SGFCMDRFTVGCFAHALCKEGRWADALDMIER-EDFKL--DTVLCTHMISGLM 118

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
               F++A   L +M      C P+V TY  L+S + K      C++ I           
Sbjct: 119 EASYFDEAMSFLHRMRCNS--CIPNVVTYRTLLSGFLKKKQLGWCKRIIN---------- 166

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI------ 329
            +M+ +G  P+   +N L+   C       A +L + M   GC P  V YN FI      
Sbjct: 167 -MMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQ 225

Query: 330 -----------------------------------RYYSVVNEIDKAIEMMRKMQNLNHG 354
                                              R    V + DKA +++++M      
Sbjct: 226 EKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGF- 284

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           VP +S+Y+ +I  LC A +V +A     E+   G  P  YTY ++ D+   A
Sbjct: 285 VPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKA 336



 Score = 44.7 bits (104), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 72/196 (36%), Gaps = 24/196 (12%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           +K F  RP    YN ++  L   G  +    + ++M   GF    D +T      + CK 
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGF--CMDRFTVGCFAHALCKE 88

Query: 255 GMQTGCRKAIRRR---------------IWEANHLFRLMLF------KGFVPDVVAYNCL 293
           G        I R                + EA++    M F         +P+VV Y  L
Sbjct: 89  GRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTL 148

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           + G  K  ++     + + M  +GC PN   +NS +  Y    +   A +++ +M     
Sbjct: 149 LSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG- 207

Query: 354 GVPTSSSYTPIIHALC 369
             P    Y   I ++C
Sbjct: 208 CPPGYVVYNIFIGSIC 223


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 136/276 (49%), Gaps = 21/276 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +G  V   +    +M  +G    V T S+  L+  L ++    +A+     M +   +
Sbjct: 157 LCKGKFVTDAYRLYSEMIAKGIFPNVYTFSI--LVDALCKDRKGKQAMNLLAMMMKKGVK 214

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V  Y  +++  C V   NKA  +   M   G    P+V+ Y I+I+  CK        
Sbjct: 215 PNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVE--PNVWCYNIIINGLCK-------- 264

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              ++R+ EA +LF+ M +K   PDVV YN LIDG CK  +I  +LEL D+M   G   +
Sbjct: 265 ---KKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVD 321

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            +TYNS +      + +D+AI ++++++  + G+ P   +YT +I  LC+ GR+ +A   
Sbjct: 322 IITYNSLLHALCKNHHLDQAITLVKEIK--DQGIQPNVCTYTTLIDGLCKDGRLEDAYVI 379

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
             E++  G     +TY ++   +N   +  L D+ L
Sbjct: 380 FQEILTEGYHITVWTYNVM---INGLCKKGLFDEAL 412



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 27/232 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           VN+AL  F  M Q    P+V+ YN++IN LC+    ++A  L ++M     +  PDV TY
Sbjct: 233 VNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWK--KINPDVVTY 290

Query: 245 TILISSYCKYGMQTGCRKAI------------------------RRRIWEANHLFRLMLF 280
            ILI   CK G  +   + +                           + +A  L + +  
Sbjct: 291 NILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKD 350

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G  P+V  Y  LIDG CK  R+E A  +F ++  +G      TYN  I         D+
Sbjct: 351 QGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDE 410

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
           A+ ++ +M++ N  +P + SY  II+AL E G  ++    L  ++  G   R
Sbjct: 411 ALALLSRMED-NACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRGLSKR 461



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 99/197 (50%), Gaps = 17/197 (8%)

Query: 153 DFLKDMS-RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +  K+M  ++ N ++VT +    LI  L + G ++ +L     M+      D+  YN ++
Sbjct: 273 NLFKEMHWKKINPDVVTYN---ILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLL 329

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           +ALC+  + ++A  L+++++  G +  P+V TYT LI   CK G           R+ +A
Sbjct: 330 HALCKNHHLDQAITLVKEIKDQGIQ--PNVCTYTTLIDGLCKDG-----------RLEDA 376

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +F+ +L +G+   V  YN +I+G CK    + AL L   M    CIP+ V+Y + I  
Sbjct: 377 YVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYA 436

Query: 332 YSVVNEIDKAIEMMRKM 348
            S   E  K  +++  M
Sbjct: 437 LSEKGETVKTNKLLCAM 453



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 111/277 (40%), Gaps = 54/277 (19%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG   +  ++T L+      G +    +   ++ +    P+   +  +I  +C  G   +
Sbjct: 39  NGIKPSIVTLTILMNCYCHTGGITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYE 98

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A    + +   GF+   D  +Y IL++  CK G +T     + R+ W             
Sbjct: 99  ALLFHDHVVAHGFKL--DQVSYAILMNGLCKMG-ETRAAMQMLRKTW------------- 142

Query: 283 FVPDVVAYNCLIDGCCK------TYRI-----------------------------ERAL 307
              DVV Y+ +ID  CK       YR+                             ++A+
Sbjct: 143 VNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAM 202

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
            L   M KKG  PN VTY + +  Y +VN+++KA+ +   M  +  GV P    Y  II+
Sbjct: 203 NLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVM--VQEGVEPNVWCYNIIIN 260

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            LC+  RV EA +   E+      P   TY ++ D L
Sbjct: 261 GLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGL 297



 Score = 41.2 bits (95), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  +T  +   +I  L ++GL +EALA   RM+   C PD  +Y  +I AL   G   K 
Sbjct: 387 GYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETVKT 446

Query: 224 RFLLEQMELPGF 235
             LL  M + G 
Sbjct: 447 NKLLCAMIVRGL 458


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 129/253 (50%), Gaps = 19/253 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFY-RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           T LI    + G ++EA A  Y +M +  CRPDV+ +N +I+ LC+ G    A  ++  M 
Sbjct: 348 TILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMS 407

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G  C P++ TYT L+  +CK           + ++ EA ++   M  KGF  +++ YN
Sbjct: 408 ANG--CTPNLITYTTLLDGFCK-----------KNQLEEAGYVLNEMSAKGFELNIMGYN 454

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L+   CK  ++ +AL++  +M+ KGC P+  T+N+ I     V+  + A+ + R M  L
Sbjct: 455 VLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDML-L 513

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA---LNAAEE 408
           +  +  + +Y  +IHA    G + EA   + +++  G    E TY  +  A   L A E+
Sbjct: 514 DGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEK 573

Query: 409 P-SLLDDGLRKRI 420
              L D+ +RK +
Sbjct: 574 ALGLFDEMVRKDL 586



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 135/289 (46%), Gaps = 24/289 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F + N ++     L +MS +G    +   +V  L++ L + G V +AL     M    C+
Sbjct: 425 FCKKNQLEEAGYVLNEMSAKGFELNIMGYNV--LLRALCKNGKVPKALDMLGEMSDKGCK 482

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD++ +N +I  LC+V     A  L   M L G     +  TY  LI ++ + G      
Sbjct: 483 PDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGV--IANTVTYNTLIHAFLRGG------ 534

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I EA  L   MLF+G   D + YN LI   CK    E+AL LFD+M +K  +P+
Sbjct: 535 -----AIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPS 589

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            ++ N  I     V ++  A+E++R M  ++ G+ P   +Y  +I+ LC+ G + EA + 
Sbjct: 590 NISCNLLINGLCRVGKVCNALELLRDM--IHRGLAPDVVTYNSLINGLCKMGNIREAFNL 647

Query: 381 LAELVDGGSVPREYTYK-LVCDALNAAEEPSLLDDGLRKRIRDGIEYRF 428
             +L   G  P   TY  L+C    A     + DD     +R G+E  F
Sbjct: 648 FNKLQAEGIQPDAITYNTLICWHCRAG----MFDDAYLLLLR-GVENAF 691



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 120/255 (47%), Gaps = 24/255 (9%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D + DMS   NG      + T L+    ++  + EA      M       ++  YNV++ 
Sbjct: 401 DMVNDMS--ANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLR 458

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           ALC+ G   KA  +L +M   G  C PD++T+  LI   CK             R  +A 
Sbjct: 459 ALCKNGKVPKALDMLGEMSDKG--CKPDIFTFNTLIFGLCKV-----------DRKEDAL 505

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L+R ML  G + + V YN LI    +   I+ AL+L +DM  +GC  + +TYN  I+ +
Sbjct: 506 ALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAF 565

Query: 333 SVVNEIDKAI----EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             +   +KA+    EM+RK       VP++ S   +I+ LC  G+V  A + L +++  G
Sbjct: 566 CKLGATEKALGLFDEMVRK-----DLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRG 620

Query: 389 SVPREYTYKLVCDAL 403
             P   TY  + + L
Sbjct: 621 LAPDVVTYNSLINGL 635



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 108/250 (43%), Gaps = 20/250 (8%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + T  +   ++K L     V+ A +    M +  C P+   Y  +I+AL +    N+A
Sbjct: 203 GVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEA 262

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LLE+M L G  C PDV T+  +I   C+             RI E   L   MLF+GF
Sbjct: 263 LKLLEEMFLMG--CLPDVDTFNDVIYGLCRL-----------NRIHEGAKLVDRMLFRGF 309

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+ + Y  L++G C+  +++ A  L +    K   PN V +   I  Y     +D+A  
Sbjct: 310 TPNDITYGVLMNGLCRVGKVDEAQVLLN----KVPTPNDVHFTILINGYVKSGRLDEANA 365

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +      N   P   ++  +IH LC+ G +  A D + ++   G  P   TY  + D  
Sbjct: 366 FLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGF 425

Query: 404 ---NAAEEPS 410
              N  EE  
Sbjct: 426 CKKNQLEEAG 435



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 104/237 (43%), Gaps = 19/237 (8%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  S   ++ +L      + A   FY M      P VY + VV+ ALC V   + A  LL
Sbjct: 172 TFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLL 231

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
             M   G  C P+   Y  LI +  K           R R+ EA  L   M   G +PDV
Sbjct: 232 RDMTKHG--CVPNSVVYQTLIHALSK-----------RDRVNEALKLLEEMFLMGCLPDV 278

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             +N +I G C+  RI    +L D M  +G  PN +TY   +     V ++D+A  ++ K
Sbjct: 279 DTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNK 338

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE-LVDGGSVPREYTYKLVCDAL 403
           +       P    +T +I+   ++GR+ EA  FL + ++  G  P  +T+  +   L
Sbjct: 339 VP-----TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGL 390



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 90/210 (42%), Gaps = 17/210 (8%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           N +T   +   F RG  ++     + DM  RG    +   +   LIK   + G   +AL 
Sbjct: 519 NTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCP--LDEITYNGLIKAFCKLGATEKALG 576

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            F  M +    P   + N++IN LCRVG    A  LL  M   G    PDV TY  LI+ 
Sbjct: 577 LFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGL--APDVVTYNSLING 634

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            CK G            I EA +LF  +  +G  PD + YN LI   C+    + A  L 
Sbjct: 635 LCKMG-----------NIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLL 683

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
               +   IPN VT+  +I   + + EI K
Sbjct: 684 LRGVENAFIPNDVTW--YILVSNFIKEIGK 711



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 4/130 (3%)

Query: 281 KGFVPDVVAYNCLID--GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           KG+      Y+ LID  G  K +++   L L   + ++G       +   ++YY   N  
Sbjct: 96  KGYCHTFDVYHVLIDKLGAAKEFKVIDKLLL--QIKEEGIAFRESLFICIMKYYGRANLP 153

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
            +A  M+  M+ +    PT  SY  ++  L  A     A +   E++  G +P  YT+ +
Sbjct: 154 GQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGV 213

Query: 399 VCDALNAAEE 408
           V  AL    E
Sbjct: 214 VMKALCMVNE 223


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 117/246 (47%), Gaps = 16/246 (6%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M +RG     T  +   L++ L   G+V EA+A F  M    C PD + Y+++++ LC  
Sbjct: 135 MPQRGCAR--TPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGA 192

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G   +A  LL      GF   P+V  Y  LI  YC  G            +  A  +F+ 
Sbjct: 193 GRAGEAVALLTDAMGKGFV--PNVAVYNALIDGYCSTG-----------DLELAIDIFKG 239

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M  KG +P+V  Y  LI G CK+ ++ERA+ L+  M + G  PN VTY + I+       
Sbjct: 240 MQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGH 299

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           ++ A  ++  M+      P   +   +I ALC+ GR+ EA+ FL  LV  G    +  Y 
Sbjct: 300 LEHAFRLLHSMEACGLA-PNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYT 358

Query: 398 LVCDAL 403
            + DAL
Sbjct: 359 SMIDAL 364



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 102/222 (45%), Gaps = 16/222 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           GL   A   F  M Q  C    + Y  ++  LC  G   +A  +   M   G  C PD +
Sbjct: 123 GLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDG--CAPDSH 180

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
            Y+I++   C  G           R  EA  L    + KGFVP+V  YN LIDG C T  
Sbjct: 181 VYSIMVHGLCGAG-----------RAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGD 229

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           +E A+++F  M  KGC+PN  TY   I  +    ++++A+ +  +M  +  G+ P   +Y
Sbjct: 230 LELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRM--IEAGLAPNVVTY 287

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           T +I   C  G +  A   L  +   G  P E+T  ++ DAL
Sbjct: 288 TTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDAL 329



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 125/307 (40%), Gaps = 66/307 (21%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D  K M  +G   L    + T LI    + G V  A+  + RM +    P+V  Y  +I 
Sbjct: 235 DIFKGMQSKGC--LPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQ 292

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG--------MQTGCRKAI 264
             C  G+   A  LL  ME  G    P+ +T  +LI + CK+G        + +  +K I
Sbjct: 293 GQCSEGHLEHAFRLLHSMEACGL--APNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGI 350

Query: 265 R----------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
           +                 +   A++L + ++ +GFVPD   Y+ LIDG C+  ++  A+ 
Sbjct: 351 KVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAIS 410

Query: 309 LFDD-----------------------------------MNKKGCIPNRVTYNSFIRYYS 333
           L +D                                   M   G  P+ VTY  FIR Y 
Sbjct: 411 LLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYC 470

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               ++ A  MM  +Q ++HGV P  ++Y  +I      G V +A   L  ++D G  P 
Sbjct: 471 QDGRMEDAESMM--IQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPN 528

Query: 393 EYTYKLV 399
           + +Y ++
Sbjct: 529 DESYTVL 535



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 20/202 (9%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP-DVYTYTILISSYCKYGMQTGC 260
           P +   N ++ AL R G       +L  ME    R P  +++TYT LI++YC  G     
Sbjct: 41  PPIRCLNTLLMALARHG-------MLSDMESLAARMPVRNLHTYTTLINAYCHAGDLPAA 93

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
           ++          HL  L L  G  PD  AY   + G C+T     A  LF  M ++GC  
Sbjct: 94  KR----------HLSSL-LRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCAR 142

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
              TY + ++       + +A+ +   M   +   P S  Y+ ++H LC AGR  EA   
Sbjct: 143 TPFTYAALLQGLCGAGMVREAMAVFAGMWP-DGCAPDSHVYSIMVHGLCGAGRAGEAVAL 201

Query: 381 LAELVDGGSVPREYTYKLVCDA 402
           L + +  G VP    Y  + D 
Sbjct: 202 LTDAMGKGFVPNVAVYNALIDG 223



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 29/222 (13%)

Query: 173 TCL--IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           TCL  I  L + G + EA      + Q   + +   Y  +I+ALC+ G F+ A  L++++
Sbjct: 321 TCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKI 380

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG------------MQTGCR-KAIRRRIWEANHL--F 275
              GF   PD + Y+ LI   C+              +++G +  A+   I    HL  F
Sbjct: 381 ITEGFV--PDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREF 438

Query: 276 RL---------MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           R          M   G  PDVV Y   I   C+  R+E A  +   M   G  PN  TYN
Sbjct: 439 RSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYN 498

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           + I+ Y+ +  + +A   ++ M + N   P   SYT ++  L
Sbjct: 499 TLIKGYANLGLVSQAFSSLKNMID-NGCKPNDESYTVLLGLL 539



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 106/248 (42%), Gaps = 19/248 (7%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           RM     +PDV  Y V I + C+ G    A  ++ QM   G R  P++ TY  LI  Y  
Sbjct: 449 RMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVR--PNLTTYNTLIKGYAN 506

Query: 254 YGMQTGCRKAIRRRIWEA--------NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G+ +    +++  I             L  L+L K    D+VA +  +    K   ++ 
Sbjct: 507 LGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISL---WKIVDMKV 563

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
             EL +++ K  C      Y+ FIR  S V+ +++A   +  MQ+ N   P+   YT +I
Sbjct: 564 LEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANL-TPSEDVYTCMI 622

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRI- 420
                   + EA  FL  +V    +PR  +Y+ +    C+  +     S+  D L K   
Sbjct: 623 ECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEYN 682

Query: 421 RDGIEYRF 428
           RD I ++ 
Sbjct: 683 RDEIAWKI 690



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 25/169 (14%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF--------- 225
           LIK     GLV++A ++   M    C+P+  +Y V++  L +  +++             
Sbjct: 500 LIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIV 559

Query: 226 ---LLEQM--ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
              +LE++  E+   +C    Y Y   I    K             R+ EA      M  
Sbjct: 560 DMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKV-----------DRLEEAKSFLVGMQS 608

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
               P    Y C+I+ C +   ++ AL   D M K+  +P   +Y   I
Sbjct: 609 ANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFII 657


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 114/223 (51%), Gaps = 14/223 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 205 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--VPNGVTFTTLIDGHCKNG----- 257

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +  +PD++ YN LI G CK   +++A  L D+M+ KG  P
Sbjct: 258 ------RVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKP 311

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +++TY + I       ++D A E  ++M   N  +    +YT +I  LC+ GR ++A   
Sbjct: 312 DKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLD-DVAYTALISGLCQEGRSVDAEKM 370

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           L E++  G  P   TY ++ +      +       L++  RDG
Sbjct: 371 LREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDG 413



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 105/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 138 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 187

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 188 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP 241

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A 
Sbjct: 242 NGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSL---LPDLITYNTLIYGLCKKGDLKQAH 298

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
             + E+   G  P + TY  + D 
Sbjct: 299 HLIDEMSMKGLKPDKITYTTLIDG 322



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 14/197 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + RM      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 245 TFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEM 304

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G +  PD  TYT LI   CK G      +  +R I E   L           D VAY
Sbjct: 305 SMKGLK--PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXL-----------DDVAY 351

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  R   A ++  +M   G  PN  TY   I  +    ++ K  +++++MQ 
Sbjct: 352 TALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQR 411

Query: 351 LNHGVPTSSSYTPIIHA 367
             H VP+  +Y  +++ 
Sbjct: 412 DGH-VPSVVTYNVLMNG 427



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 22/156 (14%)

Query: 260 CRKAIRRRIWEANHLFRLMLFK------------GFVPDVVAYNCLIDGCCKTYRIERAL 307
           CRK +        HL +L  FK            G+   +  +N L+   CK   I  A 
Sbjct: 106 CRKVLE-------HLMKLKYFKLVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQ 158

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
            +FD + K G  P+ V+YN+ +  Y  + ++D+   +   M  L  GV P   +Y+ +I+
Sbjct: 159 SVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM--LASGVQPDVYTYSVLIN 216

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            LC+  ++ +A +   E++  G VP   T+  + D 
Sbjct: 217 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 252


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 123/260 (47%), Gaps = 18/260 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R   +    +   +M RRG    V T     L+  + +   +N A A    M +    PD
Sbjct: 254 RSGKLASARNVFDEMLRRGVQPTVVT--FNTLMSGMCKASDLNNANALRGLMAKAGIAPD 311

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           VY Y   I  LC+ G    A  + E+M   G    P+    T LI ++CK G  T     
Sbjct: 312 VYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLN--PNTVVLTTLIDAHCKEGDVTA---G 366

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
           +  R WE       M  +G   D+VAYN L++G C+   ++ A ++ ++M K G  P++V
Sbjct: 367 LELR-WE-------MATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKV 418

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLA 382
           TY + I       E+D A+EM ++M   + GV     +YT +I  L +AGR ++A   L 
Sbjct: 419 TYTTLIDGCCKEGELDTAMEMKQEMS--DEGVALDDVTYTALISGLSKAGRSVDAERILC 476

Query: 383 ELVDGGSVPREYTYKLVCDA 402
           E+++ G  P   TY +V DA
Sbjct: 477 EMMEAGLQPDNTTYTMVIDA 496



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 14/232 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L++ +   G +  A   F  M +   +P V  +N +++ +C+  + N A  L   M   G
Sbjct: 248 LMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAG 307

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDVYTY   I   CK G           RI +A  +F  M  +G  P+ V    LI
Sbjct: 308 IA--PDVYTYGAFIQGLCKTG-----------RIQDAMEMFEEMCERGLNPNTVVLTTLI 354

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK   +   LEL  +M  +G   + V YN+ +  +  V ++  A +++ +M+  +  
Sbjct: 355 DAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRK-DGL 413

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            P   +YT +I   C+ G +  A +   E+ D G    + TY  +   L+ A
Sbjct: 414 KPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKA 465



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 16/219 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EA A +  +      P+   +N+++  + R G    AR + ++M   G +  P V T+
Sbjct: 223 VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQ--PTVVTF 280

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L+S  CK              +  AN L  LM   G  PDV  Y   I G CKT RI+
Sbjct: 281 NTLMSGMCKAS-----------DLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQ 329

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTP 363
            A+E+F++M ++G  PN V   + I  +    ++   +E+  +M     GV     +Y  
Sbjct: 330 DAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMA--TRGVKADLVAYNA 387

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +++  C    +  A D + E+   G  P + TY  + D 
Sbjct: 388 LVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDG 426



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 35/260 (13%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           ++   +  ++M  RG      T  +T LI    +EG V   L   + M     + D+ AY
Sbjct: 328 IQDAMEMFEEMCERGLNP--NTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAY 385

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------ 255
           N ++N  CRV +   A  ++E+M   G +  PD  TYT LI   CK G            
Sbjct: 386 NALVNGFCRVRDMKAANDIVEEMRKDGLK--PDKVTYTTLIDGCCKEGELDTAMEMKQEM 443

Query: 256 --------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
                         + +G  KA R    +A  +   M+  G  PD   Y  +ID  CK  
Sbjct: 444 SDEGVALDDVTYTALISGLSKAGRS--VDAERILCEMMEAGLQPDNTTYTMVIDAFCKNG 501

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
            ++   +   +M  KG  P  VTYN  +  +  + ++  A  ++  M  LN GV P   +
Sbjct: 502 DVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAM--LNIGVCPNDIT 559

Query: 361 YTPIIHALCEAGRVLEARDF 380
           Y  ++   C+ G+V +  + 
Sbjct: 560 YNILLDGHCKHGKVRDTEEL 579



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 18/186 (9%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           +G  D   +M +  + E V    VT   LI  L + G   +A      M +   +PD   
Sbjct: 430 EGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTT 489

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           Y +VI+A C+ G+       L++M+  G    P + TY ++++ +C  G           
Sbjct: 490 YTMVIDAFCKNGDVKTGFKHLKEMQNKGKN--PGIVTYNVVMNGFCSLG----------- 536

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++  A+ L   ML  G  P+ + YN L+DG CK  ++    EL    + KG + +   Y 
Sbjct: 537 QMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEEL---KSAKGMVSDFGVYT 593

Query: 327 SFIRYY 332
           S I  +
Sbjct: 594 SLINEF 599


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 126/243 (51%), Gaps = 19/243 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L +EG + EA +    M +    PDV+ YN +++    V    KA+ +   M   G
Sbjct: 265 LVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMG 324

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  DV++Y+++IS   K  M             EA  LF  M  +  +PDVVAY+ LI
Sbjct: 325 VTC--DVHSYSVMISGLSKMKMLD-----------EAMDLFEGMRNENVIPDVVAYSSLI 371

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+ RI  AL+  D+M+ +G  PN +TY S I      +++DKAI +++K++  + G
Sbjct: 372 DGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIK--DQG 429

Query: 355 VPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
           +  +  +Y  ++  LC+ GR+ +A+    +L+  G      TY ++   +N   + SL D
Sbjct: 430 IQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIM---INGLCKESLFD 486

Query: 414 DGL 416
           + L
Sbjct: 487 EAL 489



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 112/220 (50%), Gaps = 18/220 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +N A + F ++ +   +PD+  Y  +I  LC  G   ++    +++   G +   D  +Y
Sbjct: 100 INSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKL--DHVSY 157

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI+  CK G QTG    + R+I     + R        PDVV YN +IDG CK   + 
Sbjct: 158 GTLINGLCKIG-QTGPALRLLRKI--EGEICR--------PDVVMYNTIIDGLCKDKLVR 206

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYT 362
            A +L+ +M +K   PN VTY S I  + +V ++DKA  ++ +M  +N+N   P   ++ 
Sbjct: 207 DAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVN---PNVCTFN 263

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            ++  LC+ G++ EA+  +A ++  G  P  +TY  + D 
Sbjct: 264 TLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDG 303



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 130/293 (44%), Gaps = 55/293 (18%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L + G    AL    +++   CRPDV  YN +I+ LC+      A  L  +M
Sbjct: 156 SYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEM 215

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                R  P+V TYT LI  +C  G           ++ +A  L   M+ K   P+V  +
Sbjct: 216 FEK--RVFPNVVTYTSLIYGFCIVG-----------QLDKAFGLLNEMVLKNVNPNVCTF 262

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE------------- 337
           N L+DG CK  ++  A  L   M K+G  P+  TYN+ +  Y +V E             
Sbjct: 263 NTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQ 322

Query: 338 ----------------------IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
                                 +D+A+++   M+N N  +P   +Y+ +I  LC++GR+ 
Sbjct: 323 MGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENV-IPDVVAYSSLIDGLCKSGRIN 381

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD--GLRKRIRD-GIE 425
            A  ++ E+ D G  P   TY  + DAL  + +   +D    L K+I+D GI+
Sbjct: 382 SALKYVDEMHDRGQPPNVITYTSLIDALCKSHQ---VDKAIALLKKIKDQGIQ 431



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 32/212 (15%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G      S + +I  L +  +++EA+  F  M+     PDV AY+ +I+ LC+ G  N A
Sbjct: 324 GVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSA 383

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK----------------YGMQTG-------- 259
              +++M   G   PP+V TYT LI + CK                 G+Q          
Sbjct: 384 LKYVDEMHDRGQ--PPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILV 441

Query: 260 ---CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
              C+     R+ +A  +F+ +L KG   DVV Y+ +I+G CK    + AL L   M  K
Sbjct: 442 DGLCKDG---RLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDK 498

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           GC+P+ + Y + I  +   +  DKA +++R+M
Sbjct: 499 GCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 14/212 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +N+A+ +F RM + R  P +  +  ++ +L +  ++     L ++MEL G +   +  T 
Sbjct: 30  LNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQ--SNYITL 87

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI+SYC             R+I  A  +F  +L  G+ PD++ Y  LI G C   +++
Sbjct: 88  NILINSYCHL-----------RQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVK 136

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            +L   D +  +G   + V+Y + I     + +   A+ ++RK++      P    Y  I
Sbjct: 137 ESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEG-EICRPDVVMYNTI 195

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           I  LC+   V +A D   E+ +    P   TY
Sbjct: 196 IDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTY 227



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 15/160 (9%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           ++ +M  RG    V T   T LI  L +   V++A+A   ++K    + ++Y YN++++ 
Sbjct: 386 YVDEMHDRGQPPNVIT--YTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDG 443

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+ G    A+ + + + + G     DV TY+I+I+  CK  +             EA  
Sbjct: 444 LCKDGRLTDAQKVFQDLLMKGHNV--DVVTYSIMINGLCKESLFD-----------EALT 490

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           L   M  KG VPD +AY  +I+   +    ++A +L  +M
Sbjct: 491 LLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 120/256 (46%), Gaps = 32/256 (12%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           ++CL KV    G  +EA    + M+  R +    AY+ +IN LC++    +AR L+E+M 
Sbjct: 52  ISCLCKV----GNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM- 106

Query: 232 LPGFRCPPDVYTYTILISSYCKY-----GMQTGCRKAIR-------------------RR 267
                 PPD  TY  ++   CK       + T    A R                    +
Sbjct: 107 --ARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEK 164

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + EA  LF  M+ +   P+VV YN LI+G CK +RIE A ELF +M  KG +P  V+YN+
Sbjct: 165 VEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 224

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I  +    ++  A ++  KM   N  VP   +YT +I  L ++G+V  A + L  +V  
Sbjct: 225 LIDGFCKKKDLVAAKDVFDKMVRSN-CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKK 283

Query: 388 GSVPREYTYKLVCDAL 403
           G  P   TY  + D  
Sbjct: 284 GVTPNVATYSCLIDGF 299



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 16/226 (7%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L +E  V EA   F +M + R  P+V  YN +IN LC+      A  L ++M   G+   
Sbjct: 159 LCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGY--V 216

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P   +Y  LI  +CK           ++ +  A  +F  M+    VP+VV Y  LIDG  
Sbjct: 217 PTEVSYNTLIDGFCK-----------KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLS 265

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PT 357
           K+ +++ A E+ D M KKG  PN  TY+  I  +  V  +D+A +++ +M  +  G+ PT
Sbjct: 266 KSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQM--VTQGIAPT 323

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +Y  ++++LC A ++ +A      +      P   TY  +  AL
Sbjct: 324 VVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRAL 369



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 18/238 (7%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           ++  ++  K+M+  G G + T  S   LI    ++  +  A   F +M +  C P+V  Y
Sbjct: 200 IETAYELFKEMA--GKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTY 257

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
             +I+ L + G    A  +L+ M   G    P+V TY+ LI  +CK            RR
Sbjct: 258 TTLIDGLSKSGKVQAAAEVLDGMVKKGV--TPNVATYSCLIDGFCKV-----------RR 304

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + EA+ L   M+ +G  P VV YN L++  C+  ++E A +LF  M ++ C P  VTYN+
Sbjct: 305 VDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNT 364

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAEL 384
            +R      ++D A  +  +M  +  G P  + +Y  +   L  AG+V EA++ + ++
Sbjct: 365 LLRALCHHKQLDGAHRLYAEM--IAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 420



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 13/179 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI  L + G V  A      M +    P+V  Y+ +I+  C+V   ++A  LLEQM
Sbjct: 256 TYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQM 315

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P V TY IL++S C+             ++ +A  LFR M  +   P VV Y
Sbjct: 316 VTQGI--APTVVTYNILLNSLCRAD-----------KLEDAFKLFRGMAQRRCHPTVVTY 362

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           N L+   C   +++ A  L+ +M  KGC P+ +TY++     +   ++ +A E+M KM+
Sbjct: 363 NTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 421



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 10/140 (7%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M  +  +P    +N + DG  K  R+E+  E++  M + G       Y   I     V  
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE---------LVDGG 388
            D+A +++  M+ L      + +Y+ II+ LC+  RV EAR+ + +         L  G 
Sbjct: 61  FDEAYKLLHTMR-LKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGP 119

Query: 389 SVPREYTYKLVCDALNAAEE 408
            V R    K + DAL   EE
Sbjct: 120 IVERLCKTKRIDDALATVEE 139


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 123/260 (47%), Gaps = 18/260 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R   +    +   +M RRG    V T     L+  + +   +N A A    M +    PD
Sbjct: 126 RSGKLASARNVFDEMLRRGVQPTVVT--FNTLMSGMCKASDLNNANALRGLMAKAGIAPD 183

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           VY Y   I  LC+ G    A  + E+M   G    P+    T LI ++CK G  T     
Sbjct: 184 VYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLN--PNTVVLTTLIDAHCKEGDVTA---G 238

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
           +  R WE       M  +G   D+VAYN L++G C+   ++ A ++ ++M K G  P++V
Sbjct: 239 LELR-WE-------MATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKV 290

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLA 382
           TY + I       E+D A+EM ++M   + GV     +YT +I  L +AGR ++A   L 
Sbjct: 291 TYTTLIDGCCKEGELDTAMEMKQEMS--DEGVALDDVTYTALISGLSKAGRSVDAERILC 348

Query: 383 ELVDGGSVPREYTYKLVCDA 402
           E+++ G  P   TY +V DA
Sbjct: 349 EMMEAGLQPDNTTYTMVIDA 368



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 16/233 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L++ +   G +  A   F  M +   +P V  +N +++ +C+  + N A  L   M   G
Sbjct: 120 LMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAG 179

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDVYTY   I   CK G           RI +A  +F  M  +G  P+ V    LI
Sbjct: 180 I--APDVYTYGAFIQGLCKTG-----------RIQDAMEMFEEMCERGLNPNTVVLTTLI 226

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK   +   LEL  +M  +G   + V YN+ +  +  V ++  A +++ +M+    G
Sbjct: 227 DAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRK--DG 284

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           + P   +YT +I   C+ G +  A +   E+ D G    + TY  +   L+ A
Sbjct: 285 LKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKA 337



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 16/219 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EA A +  +      P+   +N+++  + R G    AR + ++M   G +  P V T+
Sbjct: 95  VPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQ--PTVVTF 152

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L+S  CK              +  AN L  LM   G  PDV  Y   I G CKT RI+
Sbjct: 153 NTLMSGMCKA-----------SDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQ 201

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTP 363
            A+E+F++M ++G  PN V   + I  +    ++   +E+  +M     GV     +Y  
Sbjct: 202 DAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMA--TRGVKADLVAYNA 259

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +++  C    +  A D + E+   G  P + TY  + D 
Sbjct: 260 LVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDG 298



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 108/260 (41%), Gaps = 35/260 (13%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           ++   +  ++M  RG      T  +T LI    +EG V   L   + M     + D+ AY
Sbjct: 200 IQDAMEMFEEMCERGLNP--NTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAY 257

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------ 255
           N ++N  CRV +   A  ++E+M   G +  PD  TYT LI   CK G            
Sbjct: 258 NALVNGFCRVRDMKAANDIVEEMRKDGLK--PDKVTYTTLIDGCCKEGELDTAMEMKQEM 315

Query: 256 --------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
                         + +G  KA R    +A  +   M+  G  PD   Y  +ID  CK  
Sbjct: 316 SDEGVALDDVTYTALISGLSKAGRS--VDAERILCEMMEAGLQPDNTTYTMVIDAFCKNG 373

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
            ++   +   +M  KG  P  VTYN  +  +  + ++  A  ++  M  LN GV P   +
Sbjct: 374 DVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAM--LNIGVCPNDIT 431

Query: 361 YTPIIHALCEAGRVLEARDF 380
           Y  ++   C+ G+V +  + 
Sbjct: 432 YNILLDGHCKHGKVRDTEEL 451



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 18/186 (9%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           +G  D   +M +  + E V    VT   LI  L + G   +A      M +   +PD   
Sbjct: 302 EGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTT 361

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           Y +VI+A C+ G+       L++M+  G    P + TY ++++ +C  G           
Sbjct: 362 YTMVIDAFCKNGDVKTGFKHLKEMQNKGKN--PGIVTYNVVMNGFCSLG----------- 408

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++  A+ L   ML  G  P+ + YN L+DG CK  ++    EL    + KG + +   Y 
Sbjct: 409 QMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEEL---KSAKGMVSDFGVYT 465

Query: 327 SFIRYY 332
           S I  +
Sbjct: 466 SLINEF 471


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 117/249 (46%), Gaps = 29/249 (11%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
            ++ ++ EA+  F +M+Q    PDV ++  +I+ALC++G  + A     QM   G    P
Sbjct: 347 AKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGV--TP 404

Query: 240 DVYTYTILISSYCKYGM-------------QTGCRKAI-----------RRRIWEANHLF 275
           +++ ++ L+   C  G              Q  C  A+             R+ EA  L 
Sbjct: 405 NIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLI 464

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
            LM+  G  P+V++YN L+ G C T RI+ A +L D M   G  PN  TY   +R Y   
Sbjct: 465 DLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKA 524

Query: 336 NEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
             +D A  + R+M  L  GV P  ++Y  I+H L + GR  EA +    +++  +    Y
Sbjct: 525 RRVDDAYSLFREM--LMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIY 582

Query: 395 TYKLVCDAL 403
           TY ++ + L
Sbjct: 583 TYNIILNGL 591



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 119/239 (49%), Gaps = 17/239 (7%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L  EG V EA      M +   RP+V +YN ++   C  G  ++A  LL+ M   G +  
Sbjct: 451 LCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLK-- 508

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P+ +TYTIL+  YCK            RR+ +A  LFR ML KG  P V  YN ++ G  
Sbjct: 509 PNEFTYTILLRGYCK-----------ARRVDDAYSLFREMLMKGVTPVVATYNTILHGLF 557

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           +T R   A EL+ +M       +  TYN  +      N +D+A +M R++ + +  +  S
Sbjct: 558 QTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLD-S 616

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD-DGL 416
            ++  +I AL + GR  +A D  A +   G VP   TY+L+ +  N  EE SL + DGL
Sbjct: 617 VTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAE--NLIEEGSLGEFDGL 673



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 113/269 (42%), Gaps = 33/269 (12%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CLI      G   E +     M      PD   Y ++++ LC+ G   +AR   + M   
Sbjct: 236 CLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRK 295

Query: 234 GFRCPPDVYTYTILISSYCKYG----------MQTG--------------CRKAIRRRIW 269
           G +  PDV  Y IL+  Y   G          +  G              C  A +  I 
Sbjct: 296 GIK--PDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIE 353

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA H+F  M  +G  PDVV++  LID  CK  R++ A+  F+ M  +G  PN   ++S +
Sbjct: 354 EAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLV 413

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGG 388
                V + +KA E+    + L+ G+   +  +  ++  LC  GRV+EA+  +  ++  G
Sbjct: 414 YGLCTVGKWEKAEELF--FEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVG 471

Query: 389 SVPREYTYKLV----CDALNAAEEPSLLD 413
             P   +Y  +    C      E   LLD
Sbjct: 472 VRPNVISYNTLVAGHCLTGRIDEAAKLLD 500



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 15/228 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI      G +    A F  + +   R +V   + ++  LC     ++A  +L  + +
Sbjct: 94  SILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDIL-LLRM 152

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
             F CPPDV  Y  +I+ + + G           ++ +A +LF  M+ +G  P+VV Y  
Sbjct: 153 SEFGCPPDVVAYNTVINGFFREG-----------QVEKAYNLFLEMMDQGIPPNVVTYTT 201

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +IDG CK   ++RA  +F  M  +G  P+  TYN  I  Y    +  + ++M+ +M    
Sbjct: 202 VIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMS--T 259

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           HG+ P   +Y  ++  LC+ GR  EAR F   +   G  P    Y ++
Sbjct: 260 HGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAIL 307



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 18/257 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F R   V+  ++   +M  +G    V T   T +I  L +  +V+ A   F +M     +
Sbjct: 171 FFREGQVEKAYNLFLEMMDQGIPPNVVT--YTTVIDGLCKAQVVDRAKGVFQQMIDRGVK 228

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN +I+     G + +   +LE+M   G    PD  TY +L+   CK G      
Sbjct: 229 PDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLE--PDCITYALLLDYLCKNG------ 280

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R  EA   F  M  KG  PDV  Y  L+ G      +       D M   G  PN
Sbjct: 281 -----RCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPN 335

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
           R  +N     Y+    I++A+ +  KM+    G+ P   S+  +I ALC+ GRV +A   
Sbjct: 336 RRIFNIMFCAYAKKAMIEEAMHIFNKMR--QQGLSPDVVSFGALIDALCKLGRVDDAVLQ 393

Query: 381 LAELVDGGSVPREYTYK 397
             ++++ G  P  + + 
Sbjct: 394 FNQMINEGVTPNIFVFS 410



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 114/254 (44%), Gaps = 33/254 (12%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC-- 237
           G  GL +EAL  F  +        V A+N ++  + R G  + +  ++         C  
Sbjct: 26  GSLGL-DEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSS 84

Query: 238 --PPDVYTYTILISSYCKYG------------MQTGCRKAI------------RRRIWEA 271
              P+  TY+ILI  +C+ G            ++TG R  +             +R+ EA
Sbjct: 85  KVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEA 144

Query: 272 NHLFRLMLFK-GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
             +  L + + G  PDVVAYN +I+G  +  ++E+A  LF +M  +G  PN VTY + I 
Sbjct: 145 TDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVID 204

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                  +D+A  + ++M  ++ GV P + +Y  +IH     G+  E    L E+   G 
Sbjct: 205 GLCKAQVVDRAKGVFQQM--IDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGL 262

Query: 390 VPREYTYKLVCDAL 403
            P   TY L+ D L
Sbjct: 263 EPDCITYALLLDYL 276



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 96/234 (41%), Gaps = 23/234 (9%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           NE T   +   + +   V   +   ++M  +G   +V T +   ++  L + G  +EA  
Sbjct: 510 NEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNT--ILHGLFQTGRFSEANE 567

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD----VYTYTI 246
            +  M   R + D+Y YN+++N LC      K  F+ E  ++    C  D      T+ I
Sbjct: 568 LYLNMINSRTKCDIYTYNIILNGLC------KNNFVDEAFKMFRRLCSKDPQLDSVTFNI 621

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           +I +  K G           R  +A  LF  +   G VPDVV Y  + +   +   +   
Sbjct: 622 MIGALLKGG-----------RKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEF 670

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
             LF  M K G  PN    N+ +R      +I +A   + K+   N  +  S++
Sbjct: 671 DGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRAGVYLYKLDEKNFSLEASTT 724


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 14/223 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    N+A  L  +M   G    P+  T+T LI  +CK G     
Sbjct: 203 QPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGL--VPNGVTFTTLIDGHCKNG----- 255

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++  A   ++ ML + F+PD++ YN LI G CK   +++A +L D+M  KG  P
Sbjct: 256 ------KVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKP 309

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +++TY + I       ++D A E+   M   +  +    +YT +I  LC+ GR  +A   
Sbjct: 310 DKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLD-DVAYTALISGLCQEGRATDAEKM 368

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           L E++  G  P   TY ++ +     E+       L++  R G
Sbjct: 369 LREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQG 411



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 102/202 (50%), Gaps = 20/202 (9%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G    A+ + + +   G R  P V ++  L++ Y + G        
Sbjct: 136 LYFFNILMHRFCKEGEIWIAQSVFDSITKWGLR--PSVVSFNTLMNGYIRLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  F+L   M   G  PDV  Y+ LI+G CK  ++  A +LF++M  KG +P
Sbjct: 186 ------DLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N VT+ + I  +    ++D A+E  ++M +    +P   +Y  +I+ LC+ G + +A+D 
Sbjct: 240 NGVTFTTLIDGHCKNGKVDSAMETYKQMLS-QCFLPDLITYNTLIYGLCKKGDLKQAQDL 298

Query: 381 LAELVDGGSVPREYTYKLVCDA 402
           L E+   G  P + TY  + D 
Sbjct: 299 LDEMRMKGLKPDKITYTTLIDG 320



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 24/222 (10%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ N    L++ + D     NG   TT     LI    + G V+ A+ T+ +
Sbjct: 217 CKE-----SKMNEANDLFNEMLDKGLVPNGVTFTT-----LIDGHCKNGKVDSAMETYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ LL++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLK--PDKITYTTLIDGNCKE 324

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G            +  A  L   M+ +    D VAY  LI G C+  R   A ++  +M 
Sbjct: 325 G-----------DLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREML 373

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
             G  P+  TY   I  +    ++  A +++++MQ   H VP
Sbjct: 374 SVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGH-VP 414



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 108/245 (44%), Gaps = 34/245 (13%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L T+  M  F C   +   A +++   + R G  + +      +E  G +   D+Y +
Sbjct: 11  HTLHTYCTMIHFLCTHQMLLEAKSLIQIVVSRKGKDSASAVFAAILETKGTQ-RSDIYVF 69

Query: 245 TILISSYCKYGMQTGCRKAIR--------------RRIWEANHLFRLMLFK---GFVPDV 287
           + LI++Y + G      +  R              R++ E  HL +L  FK   GF  ++
Sbjct: 70  SGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLE--HLMKLKYFKLVWGFYKEI 127

Query: 288 VA---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           +          +N L+   CK   I  A  +FD + K G  P+ V++N+ +  Y  + ++
Sbjct: 128 LECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDL 187

Query: 339 DKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           D+  ++   M     GV P   +Y+ +I+ LC+  ++ EA D   E++D G VP   T+ 
Sbjct: 188 DQGFKLKNAMH--ASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFT 245

Query: 398 LVCDA 402
            + D 
Sbjct: 246 TLIDG 250


>gi|357469235|ref|XP_003604902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505957|gb|AES87099.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 449

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 157/335 (46%), Gaps = 35/335 (10%)

Query: 105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNG 164
           P++  LG+     F+ W      + H+    +++  +F    N + + D +K  +   +G
Sbjct: 47  PKQSQLGV----RFFIWAGFQSGYRHSGYMYRKVCNLFEIDKNPEIICDVIK--AYEVDG 100

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
            +V  +    ++K+  E   V+  L    +M+ F  +PD   YNVVI  +C+ G+     
Sbjct: 101 CVVNVNMFREVLKLCKEAENVDLGLWVLRKMEDFEMKPDTVMYNVVIKLVCKQGDVEMGE 160

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            L++ M L G    PD+ TY  +I   C  G           R+ EA  + ++M   G  
Sbjct: 161 KLMKDMSLNGI--CPDLITYMTMIEGLCSAG-----------RLEEAYEMVKVMRGNGCS 207

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKG-CIPNRVTYNSFIRYYSVVNEIDKAIE 343
           P+ V  + ++DG C+   +ERALEL D+M K G C PN VTY S I+ +    E  +A+ 
Sbjct: 208 PNSVVLSAVLDGLCRLDSMERALELLDEMEKSGDCCPNVVTYTSLIQSFCKRGEWTEALN 267

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++ +M+         + +T +I +LC  GRV EA   + +LV    V R   Y       
Sbjct: 268 ILDRMRAFGCFANHVTVFT-LIESLCTEGRVDEAYKVVDKLVVEHCVSRGDCYN------ 320

Query: 404 NAAEEPSLLDDGLRKRIRDGIEYRFRQVM--KVKP 436
                 SL+   +R +  +G E  F++++  ++KP
Sbjct: 321 ------SLVISFIRVKKLEGAENLFKEMLAAEIKP 349



 Score = 44.7 bits (104), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 121/343 (35%), Gaps = 98/343 (28%)

Query: 57  RFFFQSPRSIGRQTGFRHRTPLRQRILKK--------------EAYNIANNVLVLGP--- 99
           RFF  +    G Q+G+RH   + +++                 +AY +   V+ +     
Sbjct: 55  RFFIWA----GFQSGYRHSGYMYRKVCNLFEIDKNPEIICDVIKAYEVDGCVVNVNMFRE 110

Query: 100 --AAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVF---ARGNNVKGLWDF 154
                ++ + V LGL        WV R  + F  +       +V     +  +V+     
Sbjct: 111 VLKLCKEAENVDLGL--------WVLRKMEDFEMKPDTVMYNVVIKLVCKQGDVEMGEKL 162

Query: 155 LKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           +KDMS  G   +L+T  +   +I+ L   G + EA      M+   C P+    + V++ 
Sbjct: 163 MKDMSLNGICPDLITYMT---MIEGLCSAGRLEEAYEMVKVMRGNGCSPNSVVLSAVLDG 219

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYT---------------------------- 245
           LCR+ +  +A  LL++ME  G  C P+V TYT                            
Sbjct: 220 LCRLDSMERALELLDEMEKSG-DCCPNVVTYTSLIQSFCKRGEWTEALNILDRMRAFGCF 278

Query: 246 -------ILISSYCKYGMQTGCRKAIRRRIWE------------------------ANHL 274
                   LI S C  G      K + + + E                        A +L
Sbjct: 279 ANHVTVFTLIESLCTEGRVDEAYKVVDKLVVEHCVSRGDCYNSLVISFIRVKKLEGAENL 338

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
           F+ ML     PD +A + L+   C   R+     L D +   G
Sbjct: 339 FKEMLAAEIKPDTLASSLLLKELCLKDRVLDGFYLLDTIENMG 381


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 131/292 (44%), Gaps = 45/292 (15%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +  +K+M R+G   +  TS+ + +I  L     V +A   F  MK     PDVY Y ++I
Sbjct: 208 FQLIKEMMRKGF--VPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 265

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTG 259
           ++ C+ G   +A++L E+M   G  C P V TYT LI +Y K              +  G
Sbjct: 266 DSFCKAGLIEQAQWLFEEMRSVG--CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 323

Query: 260 CR------KAIRRRIWEANHLFRLMLFKG----------------------FVPDVVAYN 291
           CR       A+   + +A ++ +                              P+VV Y 
Sbjct: 324 CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYG 383

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L+DG CK ++++ A EL D M   GC PN + Y++ I  +    +ID A E+  +M   
Sbjct: 384 ALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKC 443

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            + +P+  +YT +I  + + GR+  A   L++++     P   TY  + D L
Sbjct: 444 GY-LPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 494



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 120/277 (43%), Gaps = 26/277 (9%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G   T  + T LI    +   V +A   F+RM    CRP+   Y  +++ LC+ GN 
Sbjct: 285 RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNI 344

Query: 221 NKARFLLEQMELPG--------FRC------PPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           +KA  +  ++            F C       P+V TY  L+   CK             
Sbjct: 345 SKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK-----------AH 393

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++  A+ L   ML  G  P+ + Y+ LIDG CK  +I+ A E+F  M K G +P+  TY 
Sbjct: 394 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYT 453

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           S I        +D A++++ +M   +   P   +YT +I  LC  G   +A   L+ + +
Sbjct: 454 SLIDRMFKDGRLDLAMKVLSQMLK-DSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEE 512

Query: 387 GGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
            G  P   TY  + D L  A +  L  D   +  R G
Sbjct: 513 KGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG 549



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 16/232 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G ++ A   F +M +    P V+ Y  +I+ + + G  + A  +L QM    
Sbjct: 420 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKD- 478

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+V TYT +I   C+ G      KA++        L  LM  KG  P+VV Y  LI
Sbjct: 479 -SCTPNVVTYTAMIDGLCRIGES---EKALK--------LLSLMEEKGCSPNVVTYTALI 526

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K  +I+ +L+LF  M++KGC PN VTY   I +      +DKA  ++ +M+   + 
Sbjct: 527 DGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQ-TYW 585

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
                 Y   I    ++   + +   L E+   G+VP    Y ++ D  + A
Sbjct: 586 PKYLQGYRCAIQGFSKS--FIASLGILEEMESYGTVPIAPVYGMLIDCFSKA 635



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 25/193 (12%)

Query: 203 DVYAYNVVIN---------ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           ++ A N V+N          LC VG F+KA  L+++M   GF   PD  TY+ +I+  C 
Sbjct: 178 EMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGF--VPDTSTYSKVITFLCH 235

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        ++ +A  LF+ M   G  PDV  Y  LID  CK   IE+A  LF++M
Sbjct: 236 -----------ATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM 284

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
              GC P  VTY + I  Y    ++ +A ++  +M  ++ G  P   +Y  ++  LC+AG
Sbjct: 285 RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM--VDAGCRPNDVTYGALVDGLCKAG 342

Query: 373 RVLEARDFLAELV 385
            + +A +  A+L+
Sbjct: 343 NISKAFEVYAKLI 355



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 118/285 (41%), Gaps = 49/285 (17%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   +    +    M++   G L +  + T LI  + ++G ++ A+    +M +  C 
Sbjct: 424 FCKAGKIDSAQEVFLQMTK--CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCT 481

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V  Y  +I+ LCR+G   KA  LL  ME  G  C P+V TYT LI    K G      
Sbjct: 482 PNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG--CSPNVVTYTALIDGLGKAG------ 533

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA--------------- 306
                +I  +  LF  M  KG  P+ V Y  LI+  C    +++A               
Sbjct: 534 -----KIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKY 588

Query: 307 ------------------LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
                             L + ++M   G +P    Y   I  +S    ++ A+E+ ++M
Sbjct: 589 LQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEM 648

Query: 349 QNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             +   V T +  Y  +I ALC A +V EA    +E+   G VP 
Sbjct: 649 MEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPE 693



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 129/319 (40%), Gaps = 48/319 (15%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           FA     +G W    DM  R + +L  T   T +I  L E    +EA++  +RM+   C 
Sbjct: 16  FAHALCKEGRWADALDMIEREDFKL-DTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCI 74

Query: 202 PDVYAY-----------------------------------NVVINALCRVGNFNKARFL 226
           P+V  Y                                   N ++++ C   ++  A  L
Sbjct: 75  PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 134

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE-ANHLFRLMLFKGFVP 285
           L +M   G  CPP    Y I I S C      G  K     + + A  ++  ML    V 
Sbjct: 135 LNRMTTCG--CPPGYVVYNIFIGSIC------GQEKLPSPDLLDLAEKIYGEMLAANCVL 186

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           + V         C   + ++A +L  +M +KG +P+  TY+  I +     +++KA  + 
Sbjct: 187 NKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLF 246

Query: 346 RKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           ++M+ +  GV P   +YT +I + C+AG + +A+    E+   G  P   TY  +  A  
Sbjct: 247 QEMKMV--GVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 304

Query: 405 AAEEPSLLDDGLRKRIRDG 423
            A++    +D   + +  G
Sbjct: 305 KAKQVPQANDIFHRMVDAG 323



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 97/222 (43%), Gaps = 25/222 (11%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G + K L   L  M  +G    V T   T LI  LG+ G ++ +L  F +M +  C P+ 
Sbjct: 498 GESEKAL-KLLSLMEEKGCSPNVVT--YTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNY 554

Query: 205 YAYNVVINALCRVGNFNKARFLLEQME-------LPGFRCPPDVYTYTILIS-------- 249
             Y V+IN LC  G  +KAR LL +M+       L G+RC    ++ + + S        
Sbjct: 555 VTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEME 614

Query: 250 SYCK------YGMQTGC-RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           SY        YGM   C  KA R  I    H   + +      D   Y  LI   C   +
Sbjct: 615 SYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQ 674

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           +E A  L+ +M ++G +P    +   I+    V + D+A+++
Sbjct: 675 VEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 716



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 106/277 (38%), Gaps = 58/277 (20%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +V C    L +EG   +AL    R + F+   D      +I+ L     F++A   L +M
Sbjct: 12  TVGCFAHALCKEGRWADALDMIER-EDFKL--DTVLCTHMISGLMEASYFDEAMSFLHRM 68

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                 C P+V TY  L+S + K      C++ I            +M+ +G  P+   +
Sbjct: 69  RCN--SCIPNVVTYRTLLSGFLKKKQLGWCKRIIN-----------MMMTEGCNPNPSLF 115

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI--------------------- 329
           N L+   C       A +L + M   GC P  V YN FI                     
Sbjct: 116 NSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKI 175

Query: 330 --------------------RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
                               R    V + DKA +++++M      VP +S+Y+ +I  LC
Sbjct: 176 YGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGF-VPDTSTYSKVITFLC 234

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            A +V +A     E+   G  P  YTY ++ D+   A
Sbjct: 235 HATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKA 271


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 139/319 (43%), Gaps = 50/319 (15%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A  F++W      F H+     EM I  A      GL  +L D+ +  N E +T  + + 
Sbjct: 131 ALAFFNWATAGEGFEHSPQPYNEM-IDLAGKVKQFGLAWYLIDLMKARNVE-ITVVTFSM 188

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L++     GL  EA+  F RM+ + C  D+ A++ VI+ LC+     +A+   + ++   
Sbjct: 189 LVRRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEAQSFFDNLK--- 245

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PDV  YT L+  +C+ G            I EA  +FR M   G  P+V  Y+ +I
Sbjct: 246 HKFEPDVIVYTSLVHGWCRAG-----------DISEAESVFREMKMAGISPNVYTYSIVI 294

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL--- 351
           D  C++ +I RA ++F +M   GC PN VT+N+ IR +      +K +++  +M+ L   
Sbjct: 295 DALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCA 354

Query: 352 -------------------------------NHGVPTSSSYTPIIHALCEAGRVLEARDF 380
                                          N   P +SS+ PI   + ++  V  A   
Sbjct: 355 ADLITYNFLIETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRM 414

Query: 381 LAELVDGGSVPREYTYKLV 399
            A + + G  P   TY ++
Sbjct: 415 FARMKEVGCKPNTVTYNIL 433



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 115/289 (39%), Gaps = 46/289 (15%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-- 230
           T L+      G ++EA + F  MK     P+VY Y++VI+ALCR G   +A  +  +M  
Sbjct: 256 TSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLD 315

Query: 231 -------------------------------ELPGFRCPPDVYTYTILISSYCKYGMQTG 259
                                          ++   RC  D+ TY  LI ++CK      
Sbjct: 316 AGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHCK------ 369

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   + EA  +   M      P+  ++N +     K+  +  A  +F  M + GC 
Sbjct: 370 -----DDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCK 424

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN VTYN  +R ++V    D   ++ ++M       P  ++Y  +I   C  G    A  
Sbjct: 425 PNTVTYNILMRMFAVPKSADMIFKLKKEMDE-EEVEPNFNTYRELIALYCGMGHWNHAYM 483

Query: 380 FLAELVDGGSV-PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYR 427
           F  E++D   + P    YK+V + L  A +    ++ + K +  G   R
Sbjct: 484 FFREMIDEKCIKPSMPLYKMVLEELRKAGQLKKHEELVDKMVERGFASR 532



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A +L  LM  +     VV ++ L+    +      A+  F+ M   GC  + + +++ I 
Sbjct: 167 AWYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVI- 225

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             S++ +  +A+E      NL H   P    YT ++H  C AG + EA     E+   G 
Sbjct: 226 --SILCKKRRAVEAQSFFDNLKHKFEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGI 283

Query: 390 VPREYTYKLVCDAL 403
            P  YTY +V DAL
Sbjct: 284 SPNVYTYSIVIDAL 297


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 131/292 (44%), Gaps = 45/292 (15%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +  +K+M R+G   +  TS+ + +I  L     V +A   F  MK     PDVY Y ++I
Sbjct: 442 FQLIKEMMRKGF--VPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 499

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTG 259
           ++ C+ G   +A++L E+M   G  C P V TYT LI +Y K              +  G
Sbjct: 500 DSFCKAGLIEQAQWLFEEMRSVG--CSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 557

Query: 260 CR------KAIRRRIWEANHLFRLMLFKG----------------------FVPDVVAYN 291
           CR       A+   + +A ++ +                              P+VV Y 
Sbjct: 558 CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYG 617

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L+DG CK ++++ A EL D M   GC PN + Y++ I  +    +ID A E+  +M   
Sbjct: 618 ALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKC 677

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            + +P+  +YT +I  + + GR+  A   L++++     P   TY  + D L
Sbjct: 678 GY-LPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 728



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 112/253 (44%), Gaps = 26/253 (10%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LI    +   V +A   F+RM    CRP+   Y  +++ LC+ GN +KA  + 
Sbjct: 526 TVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVY 585

Query: 228 EQMELPG--------FRC------PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            ++            F C       P+V TY  L+   CK             ++  A+ 
Sbjct: 586 AKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCK-----------AHKVDHAHE 634

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L   ML  G  P+ + Y+ LIDG CK  +I+ A E+F  M K G +P+  TY S I    
Sbjct: 635 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 694

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
               +D A++++ +M   +   P   +YT +I  LC  G   +A   L+ + + G  P  
Sbjct: 695 KDGRLDLAMKVLSQMLK-DSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNV 753

Query: 394 YTYKLVCDALNAA 406
            TY  + D L  +
Sbjct: 754 VTYTALIDGLGQS 766



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 25/193 (12%)

Query: 203 DVYAYNVVIN---------ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           ++ A N V+N          LC VG F+KA  L+++M   GF   PD  TY+ +I+  C 
Sbjct: 412 EMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGF--VPDTSTYSKVITFLCH 469

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        ++ +A  LF+ M   G  PDV  Y  LID  CK   IE+A  LF++M
Sbjct: 470 -----------ATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEM 518

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
              GC P  VTY + I  Y    ++ +A ++  +M  ++ G  P   +Y  ++  LC+AG
Sbjct: 519 RSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM--VDAGCRPNDVTYGALVDGLCKAG 576

Query: 373 RVLEARDFLAELV 385
            + +A +  A+L+
Sbjct: 577 NISKAFEVYAKLI 589



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 127/318 (39%), Gaps = 46/318 (14%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           FA     +G W    DM  R + +L  T   T +I  L E    +EA++  +RM+   C 
Sbjct: 250 FAHALCKEGRWADALDMIEREDFKL-DTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCI 308

Query: 202 PDVYAY-----------------------------------NVVINALCRVGNFNKARFL 226
           P+V  Y                                   N ++++ C   ++  A  L
Sbjct: 309 PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 368

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE-ANHLFRLMLFKGFVP 285
           L +M   G  CPP    Y I I S C      G  K     + + A  ++  ML    V 
Sbjct: 369 LNRMTTCG--CPPGYVVYNIFIGSIC------GQEKLPSPDLLDLAEKIYGEMLAANCVL 420

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           + V         C   + ++A +L  +M +KG +P+  TY+  I +     +++KA  + 
Sbjct: 421 NKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLF 480

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           ++M+ +    P   +YT +I + C+AG + +A+    E+   G  P   TY  +  A   
Sbjct: 481 QEMKMVGV-TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLK 539

Query: 406 AEEPSLLDDGLRKRIRDG 423
           A++    +D   + +  G
Sbjct: 540 AKQVPQANDIFHRMVDAG 557



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 90/436 (20%), Positives = 149/436 (34%), Gaps = 132/436 (30%)

Query: 80  QRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMG 139
           +R+L++    + ++V+V    A RD  ++         F+ W ER   + H       + 
Sbjct: 93  ERVLRRCRGFLTDSVVVAVLGAVRDAPEL------CARFFLWAERQVGYSHTGACYDALA 146

Query: 140 IVFA---RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196
                  R  + + L   + +  R   G L+       L++     G+ NEAL    R+K
Sbjct: 147 DALGFDGRARDAERLLREIGEEDREVLGRLLNV-----LVRRCCRGGMWNEALEELGRLK 201

Query: 197 QFRCRPDVYAYNVVI-----------------------------------NALCRVGNFN 221
            F  RP    YN ++                                   +ALC+ G + 
Sbjct: 202 DFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWA 261

Query: 222 KARFLLEQ-----------------MELPGF-------------RCPPDVYTYTILISSY 251
            A  ++E+                 ME   F              C P+V TY  L+S +
Sbjct: 262 DALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGF 321

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
            K      C++ I            +M+ +G  P+   +N L+   C       A +L +
Sbjct: 322 LKKKQLGWCKRIIN-----------MMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLN 370

Query: 312 DMNKKGCIPNRVTYNSFI-----------------------------------------R 330
            M   GC P  V YN FI                                         R
Sbjct: 371 RMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFAR 430

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
               V + DKA +++++M      VP +S+Y+ +I  LC A +V +A     E+   G  
Sbjct: 431 CLCGVGKFDKAFQLIKEMMRKGF-VPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVT 489

Query: 391 PREYTYKLVCDALNAA 406
           P  YTY ++ D+   A
Sbjct: 490 PDVYTYTILIDSFCKA 505



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L +  + T LI  + ++G ++ A+    +M +  C P+V  Y  +I+ LCR+G   KA
Sbjct: 678 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKA 737

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISS 250
             LL  ME  G  C P+V TYT LI  
Sbjct: 738 LKLLSLMEEKG--CSPNVVTYTALIDG 762



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 13/128 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G ++ A   F +M +    P V+ Y  +I+ + + G  + A  +L QM    
Sbjct: 654 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 713

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+V TYT +I   C+ G      KA++        L  LM  KG  P+VV Y  LI
Sbjct: 714 --CTPNVVTYTAMIDGLCRIGES---EKALK--------LLSLMEEKGCSPNVVTYTALI 760

Query: 295 DGCCKTYR 302
           DG  ++++
Sbjct: 761 DGLGQSWQ 768


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 21/237 (8%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           TT    CLI      G + EA+  F +M     +PDVY +N++++ LC+ G   KAR +L
Sbjct: 243 TTLIYGCLI-----VGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVL 297

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
             M   G     ++ TY  L+  Y            + ++  +A  +F  M  +G  PDV
Sbjct: 298 AVMIKQG--VDSNIVTYNSLMDGY-----------FLVKQENKATFVFNTMARRGVTPDV 344

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
            +Y+ +I+G CKT  ++ A+ LF +M+ K   PN VTYNS I        I  A +++ +
Sbjct: 345 QSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNE 404

Query: 348 MQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           M   N G P    +Y+ ++ ALC+  +V +A   + ++ D G  P  YTY ++ D L
Sbjct: 405 MH--NRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGL 459



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 96/180 (53%), Gaps = 13/180 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI  L + G +++A      M       DV  Y+ +++ALC+    +KA  L+ 
Sbjct: 379 TVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLIT 438

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +++  G +  P++YTYTIL+   CK G           R+ +A  +++ +L KG+  DV 
Sbjct: 439 KIKDQGIQ--PNIYTYTILVDGLCKNG-----------RLKDAQAVYQDLLIKGYHLDVK 485

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN +++G CK    + AL L   M   GCIP+ VTY + +R     ++ DKA++++R+M
Sbjct: 486 MYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREM 545



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 112/244 (45%), Gaps = 22/244 (9%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           + A++   +M+  + +PD++ +N++IN  C +G+ N A  +L ++   GF   PD  T T
Sbjct: 81  HTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFH--PDTVTIT 138

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            LI   C  G           ++ EA H    ++ KGF  D V+Y  LI+G CKT     
Sbjct: 139 TLIKGLCLNG-----------KVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRA 187

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYS----VVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
           AL++   ++     PN V YN+ I        V++  D   EM+ K        P   +Y
Sbjct: 188 ALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVK-----RIFPDVVTY 242

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
           T +I+     GR+ EA     +++     P  YT+ ++ D L    E     + L   I+
Sbjct: 243 TTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIK 302

Query: 422 DGIE 425
            G++
Sbjct: 303 QGVD 306



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 106/214 (49%), Gaps = 17/214 (7%)

Query: 185 VNEALATFYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           V++A+++F  +   R   +P ++ +N ++++L ++ +F+ A    +QMEL   +  PD++
Sbjct: 44  VDDAVSSFNHILHMRNPVQP-IFEFNKILSSLVKLNHFHTAISFSKQMELKQIQ--PDLF 100

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+ ILI+ +C  G        + +       +F+L    GF PD V    LI G C   +
Sbjct: 101 TFNILINCFCHLGHLNFAFSVLAK-------IFKL----GFHPDTVTITTLIKGLCLNGK 149

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +  AL   DD+  KG   ++V+Y + I       E   A++++RK+  L    P    Y 
Sbjct: 150 VREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGL-LVQPNVVMYN 208

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            II +LC+   V+ A D  +E++     P   TY
Sbjct: 209 TIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTY 242



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 16/232 (6%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M+RRG    V + S+  +I  L +  +V+EA+  F  M      P+   YN +I+ L + 
Sbjct: 335 MARRGVTPDVQSYSI--MINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKY 392

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G  + A  L+ +M   G   P DV TY+ L+ + CK             ++ +A  L   
Sbjct: 393 GRISDAWDLVNEMHNRG--QPADVITYSSLLDALCK-----------NHQVDKAITLITK 439

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           +  +G  P++  Y  L+DG CK  R++ A  ++ D+  KG   +   YN  +        
Sbjct: 440 IKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGL 499

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
            D+A+ ++ KM++ N  +P + +Y  ++ AL E  +  +A   L E++  GS
Sbjct: 500 FDEALSLVSKMED-NGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQGS 550



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 111/287 (38%), Gaps = 60/287 (20%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA----------R 224
           LI      G +N A +   ++ +    PD      +I  LC  G   +A           
Sbjct: 105 LINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKG 164

Query: 225 FLLEQM-----------------------ELPGFRCPPDVYTYTILISSYCKYGMQTG-- 259
           F L+Q+                       ++ G    P+V  Y  +I S CK  +     
Sbjct: 165 FHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHAS 224

Query: 260 --CRKAIRRRIW--------------------EANHLFRLMLFKGFVPDVVAYNCLIDGC 297
             C + I +RI+                    EA  LF  ML K   PDV  +N L+DG 
Sbjct: 225 DLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGL 284

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-P 356
           CK   +++A  +   M K+G   N VTYNS +  Y +V + +KA  +   M     GV P
Sbjct: 285 CKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMA--RRGVTP 342

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              SY+ +I+ LC+   V EA +   E+      P   TY  + D L
Sbjct: 343 DVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGL 389


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 131/279 (46%), Gaps = 21/279 (7%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
           FY   E+   F+    TC  +  + +R N ++  W F  DM R      V T ++  +I 
Sbjct: 178 FYLMKEK--GFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNI--MIN 233

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
           VL +EG + +A      M+ F  +P +  YN ++      G    AR ++ +M+  GF+ 
Sbjct: 234 VLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQ- 292

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            PD+ TY  ++S  C  G               A+ + R M   G VPD V+YN LI GC
Sbjct: 293 -PDMQTYNPILSWMCNEG--------------RASEVLREMKEIGLVPDSVSYNILIRGC 337

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
                +E A    D+M K+G +P   TYN+ I    + N+I+ A  ++R+++     V  
Sbjct: 338 SNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIRE-KGIVLD 396

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           S +Y  +I+  C+ G   +A     E++  G  P ++TY
Sbjct: 397 SVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTY 435



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 16/223 (7%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D   YN++IN  C+ G+  KA  L ++M   G +  P  +TYT LI   C+         
Sbjct: 396 DSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQ--PTQFTYTSLIYVLCR--------- 444

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
             + +  EA+ LF  ++ KG  PD+V  N L+DG C    ++RA  L  +M+     P+ 
Sbjct: 445 --KNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDD 502

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           VTYN  +R      + ++A E+M +M+    G+ P   SY  +I    + G    A    
Sbjct: 503 VTYNCLMRGLCGEGKFEEARELMGEMK--RRGIKPDHISYNTLISGYSKKGDTKHAFMVR 560

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
            E++  G  P   TY  +   L+  +E  L ++ LR+   +GI
Sbjct: 561 DEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGI 603



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 19/154 (12%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++ A +    M      PD   YN ++  LC  G F +AR L+ +M+  G +  PD  
Sbjct: 481 GNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIK--PDHI 538

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCK 299
           +Y  LIS Y K G              +  H F +   ML  GF P ++ YN L+ G  K
Sbjct: 539 SYNTLISGYSKKG--------------DTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSK 584

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
               E A EL  +M  +G +PN  ++ S I   S
Sbjct: 585 NQEGELAEELLREMKSEGIVPNDSSFCSVIEAMS 618



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 39/169 (23%)

Query: 266 RRIWEANHLFRLMLFKGFVP-----------------------------------DVVAY 290
           R + EA   F LM  KGF P                                   +V  +
Sbjct: 169 RMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTF 228

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N +I+  CK  ++++A      M   G  P  VTYN+ ++ +S+   I+ A  ++ +M++
Sbjct: 229 NIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKS 288

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
                P   +Y PI+  +C  GR   A + L E+ + G VP   +Y ++
Sbjct: 289 KGFQ-PDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNIL 333



 Score = 42.0 bits (97), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 5/112 (4%)

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            + ++ L+  CC+   ++ A+E F  M +KG  P   T N  +   S +N I+ A     
Sbjct: 155 TILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYA 214

Query: 347 KMQNLNHGVPTSSSYT--PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            M  +      S+ YT   +I+ LC+ G++ +A+ FL  +   G  P   TY
Sbjct: 215 DMYRME---IKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTY 263


>gi|56201849|dbj|BAD73299.1| fertility restorer B-like [Oryza sativa Japonica Group]
 gi|56202086|dbj|BAD73615.1| fertility restorer B-like [Oryza sativa Japonica Group]
          Length = 647

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 123/247 (49%), Gaps = 22/247 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV--NEALATFYRMKQFRCRPDVYAYNVVI 211
            L DM  R  G   TT++   L+K    +  V  ++A+  F  +     +PD  +YN VI
Sbjct: 259 LLADM--RAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIP----KPDACSYNTVI 312

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + LCR G   +AR L  +M   G    P V TYT LI     +  +  C         +A
Sbjct: 313 DGLCRRGRLPEARDLFAEMIANG--TAPTVVTYTTLI----HWLAREACFD-------DA 359

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             LF  M  +G +P+VV Y+ LIDG CK  R   A+EL D M K+  +PN +TY+S I  
Sbjct: 360 LKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDG 419

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                 + +A+E++ +M+ L    P +  +  +I  LC+AGR LEA ++L E+   G  P
Sbjct: 420 LCKEGCLGQAMEILDRMR-LQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRP 478

Query: 392 REYTYKL 398
              T+ L
Sbjct: 479 NRLTWSL 485



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 18/199 (9%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           +Y  V+ AL    + + AR LL  M   GF   P   TY +L+ ++C             
Sbjct: 239 SYTAVLAALVAHSHLSLARSLLADMRAAGF--APTTATYNVLVKAHCSDAAVP------- 289

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             I +A  +FR +      PD  +YN +IDG C+  R+  A +LF +M   G  P  VTY
Sbjct: 290 --IDDAVRVFRNIP----KPDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTY 343

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            + I + +     D A+++  +M     G+ P   +Y+ +I  LC+ GR   A + L  +
Sbjct: 344 TTLIHWLAREACFDDALKLFDEMAR--RGIMPNVVTYSSLIDGLCKGGRAASAVELLDRM 401

Query: 385 VDGGSVPREYTYKLVCDAL 403
           V    +P   TY  V D L
Sbjct: 402 VKERKLPNTITYSSVIDGL 420



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 37/239 (15%)

Query: 116 TEFYHWVER---------FFD------FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSR 160
           T   HW+ R          FD         N +T   +     +G       + L  M +
Sbjct: 344 TTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVK 403

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
               +L  T + + +I  L +EG + +A+    RM+    +PD   +  +I  LC  G  
Sbjct: 404 --ERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRA 461

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTI-------LISSYCKYGMQTGCRKAIRRRIWEANH 273
            +A   L++M   G R  P+  T+++       ++++ C  G            +  A  
Sbjct: 462 LEASNYLDEMNFAGIR--PNRLTWSLHGRINDAVVTALCSKG-----------EVVRAFQ 508

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
           +++ M  +G       ++ L++   K   +E+A  +  DM  + CIP R T+++ +R Y
Sbjct: 509 VYQSMRTRGISTKPTTFHLLVECLSKKNNLEKAAHVVRDMLSERCIPERETWDTIVRAY 567


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 132/318 (41%), Gaps = 66/318 (20%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T S   L+  L   G + EA     RM+   C PDV +Y  +I+  C VG   K   L++
Sbjct: 110 TESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVK 169

Query: 229 QMELPGFRCPPDVYTY-----------------------------------TILISSYCK 253
           +M+L G +  P++YTY                                   T LI  +CK
Sbjct: 170 EMQLKGLK--PNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCK 227

Query: 254 YGMQTGCRKAIRR------------------------RIWEANHLFRLMLFKGFVPDVVA 289
            G      K                            ++ EA+ LF  M+ KGF PD V 
Sbjct: 228 LGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVT 287

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM- 348
           Y  LIDG CK   +++A  L + M + G  PN VTY +         E+D A E++ +M 
Sbjct: 288 YTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMC 347

Query: 349 -QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
            + L   +   S+Y  I++ LC+AG +L+A   + E+ + G  P   TY  + DA     
Sbjct: 348 RKGLQLNI---STYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTG 404

Query: 408 EPSLLDDGLRKRIRDGIE 425
           E     + LR+ +  G++
Sbjct: 405 EMVKARELLREMLDRGLQ 422



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 18/218 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L   L + G ++ A    + M +   + ++  YN ++N LC+ GN  +A  L+E+M
Sbjct: 322 TYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEM 381

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  G    PD  TYT L+ +Y K G            + +A  L R ML +G  P VV +
Sbjct: 382 KEAGLH--PDTITYTTLMDAYYKTG-----------EMVKARELLREMLDRGLQPTVVTF 428

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-- 348
           N L++G C + ++E    L   M +KG +PN  TYNS ++ Y + N +  + E+ R M  
Sbjct: 429 NVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCA 488

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           Q +   VP S++Y  +I   C+A  + EA     E+V+
Sbjct: 489 QGV---VPDSNTYNILIKGHCKARNMKEAWFLHKEMVE 523



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 114/255 (44%), Gaps = 25/255 (9%)

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-----E 231
           +VL E GL+NEA   F ++  +       + N+ +  L      +  R +L  +     E
Sbjct: 47  QVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCL------SSKRDMLGMVLKVFSE 100

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
            P      +  +Y IL++S  + G           +I EA+HL   M FKG +PDVV+Y 
Sbjct: 101 FPQLGVCWNTESYNILMNSLFRLG-----------KIREAHHLLMRMEFKGCIPDVVSYT 149

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +IDG C    +++ ++L  +M  KG  PN  TY+S I       ++ +  +++R+M  +
Sbjct: 150 TIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREM--M 207

Query: 352 NHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
             GV P    YT +I   C+ G    A    +E+     VP    +  +   L+ + +  
Sbjct: 208 KRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVV 267

Query: 411 LLDDGLRKRIRDGIE 425
             D    + I+ G E
Sbjct: 268 EADKLFNEMIKKGFE 282



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 95/258 (36%), Gaps = 53/258 (20%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + T L+    + G + +A      M     +P V  +NV++N LC  G       LL+
Sbjct: 390 TITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLK 449

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M   G    P+  TY  ++  YC           IR  +  +  ++R M  +G VPD  
Sbjct: 450 WMLEKGIM--PNAATYNSIMKQYC-----------IRNNMRISTEIYRGMCAQGVVPDSN 496

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN LI G CK   ++ A  L                                 EM+ K 
Sbjct: 497 TYNILIKGHCKARNMKEAWFLHK-------------------------------EMVEKR 525

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD----ALN 404
            NL     T+SSY  +I    +  ++LEAR    E+   G V     Y L  D      N
Sbjct: 526 FNL-----TASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGN 580

Query: 405 AAEEPSLLDDGLRKRIRD 422
                 L D+ + K + D
Sbjct: 581 METTLELCDEAIEKCLLD 598


>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 257

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 114/236 (48%), Gaps = 14/236 (5%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T ++  L ++G    A   F  M +    P+V  YN +I++ C  G ++ A  LL  M  
Sbjct: 14  TAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIE 73

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
                 PD+ T++ LI+++ K            R++ EA  +++ ML     P  + YN 
Sbjct: 74  KQIN--PDIVTFSALINAFVK-----------ERKVSEAEEIYKEMLRWSIFPTTITYNS 120

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +IDG CK  R++ A  + D M  KGC P+ VT+++ I  Y     +D  +E+  +M    
Sbjct: 121 MIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRG 180

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
             V  + +YT +IH  C+ G +  A+D L E++  G  P   T+  +   L + +E
Sbjct: 181 -IVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKE 235



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 105/212 (49%), Gaps = 16/212 (7%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           C+I      G  ++A      M + +  PD+  ++ +INA  +    ++A  + ++M   
Sbjct: 50  CMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEM--L 107

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
            +   P   TY  +I  +CK           + R+ +A  +   M  KG  PDVV ++ L
Sbjct: 108 RWSIFPTTITYNSMIDGFCK-----------QDRVDDAKRMLDSMASKGCSPDVVTFSTL 156

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G CK  R++  +E+F +M+++G + N VTY + I  +  V ++D A +++ +M  ++ 
Sbjct: 157 INGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEM--ISC 214

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           GV P   ++  ++  LC    + +A   L +L
Sbjct: 215 GVAPDYITFHCMLAGLCSKKELRKAFAILEDL 246



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 16/192 (8%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           + ++ N ++VT S+   LI    +E  V+EA   +  M ++   P    YN +I+  C+ 
Sbjct: 72  IEKQINPDIVTFSA---LINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQ 128

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
              + A+ +L+ M   G  C PDV T++ LI+ YCK            +R+     +F  
Sbjct: 129 DRVDDAKRMLDSMASKG--CSPDVVTFSTLINGYCK-----------AKRVDNGMEIFCE 175

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M  +G V + V Y  LI G C+   ++ A +L ++M   G  P+ +T++  +       E
Sbjct: 176 MHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKKE 235

Query: 338 IDKAIEMMRKMQ 349
           + KA  ++  +Q
Sbjct: 236 LRKAFAILEDLQ 247



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 15/179 (8%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
            DV   T ++   CK G               A +LF  M  KG  P+V+ YNC+ID  C
Sbjct: 8   ADVVISTAIVDRLCKDGNHIN-----------AQNLFTEMHEKGIFPNVLTYNCMIDSFC 56

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
            + R   A +L   M +K   P+ VT+++ I  +    ++ +A E+ ++M   +   PT+
Sbjct: 57  HSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWS-IFPTT 115

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
            +Y  +I   C+  RV +A+  L  +   G  P   T+  +   +N   +   +D+G+ 
Sbjct: 116 ITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTL---INGYCKAKRVDNGME 171


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 134/283 (47%), Gaps = 16/283 (5%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F    ++K  +  L +M  +     V T ++  LI  L +EG + EA      M +   +
Sbjct: 242 FCIMGHLKEAFSLLNEMKLKNINPNVCTFNI--LIDALSKEGKMKEAKILLAVMMKACIK 299

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV+ YN +I+    V     A+++   M   G    PDV  YT +I+  CK  M     
Sbjct: 300 PDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVT--PDVQCYTNMINGLCKTKM----- 352

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + EA  LF  M  K  +PD+V YN LIDG CK + +ERA+ L   M ++G  P+
Sbjct: 353 ------VDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPD 406

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             +Y   +        ++ A E+ +++    + +    +YT +I+ LC+AG   EA D  
Sbjct: 407 VYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHL-NVHAYTVLINRLCKAGFFDEALDLK 465

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           +++ D G +P   T+ ++  AL   +E    +  LR+ I  G+
Sbjct: 466 SKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGL 508



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 125/255 (49%), Gaps = 18/255 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D   +M  +G    V T   T LI      G + EA +    MK     P+V  +N++I+
Sbjct: 218 DVYSEMIVKGISPDVVT--YTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILID 275

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           AL + G   +A+ LL  M     +  PDV+TY  LI  Y            +   +  A 
Sbjct: 276 ALSKEGKMKEAKILLAVMMKACIK--PDVFTYNSLIDGY-----------FLVDEVKHAK 322

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
           ++F  M  +G  PDV  Y  +I+G CKT  ++ A+ LF++M  K  IP+ VTYNS I   
Sbjct: 323 YVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGL 382

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
              + +++AI + ++M+    G+ P   SYT ++  LC++GR+ +A++    L+  G   
Sbjct: 383 CKNHHLERAIALCKRMK--EQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHL 440

Query: 392 REYTYKLVCDALNAA 406
             + Y ++ + L  A
Sbjct: 441 NVHAYTVLINRLCKA 455



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 115/248 (46%), Gaps = 18/248 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG      +++ LI     +  +  A + F  + +    P+    N +I  LC  G   K
Sbjct: 86  NGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKK 145

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A +  +Q+   GF+   D  +Y  LI+  CK    TG  KA+ R       L R +    
Sbjct: 146 ALYFHDQLVAQGFQL--DQVSYGTLINGLCK----TGETKAVAR-------LLRKLEGHS 192

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PDVV YN +I+  CK   +  A +++ +M  KG  P+ VTY + I  + ++  + +A 
Sbjct: 193 VKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAF 252

Query: 343 EMMR--KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
            ++   K++N+N   P   ++  +I AL + G++ EA+  LA ++     P  +TY  + 
Sbjct: 253 SLLNEMKLKNIN---PNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLI 309

Query: 401 DALNAAEE 408
           D     +E
Sbjct: 310 DGYFLVDE 317



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF+     G  PD+   + LI+  C    I  A  +F ++ K+G  PN +T N+ I+   
Sbjct: 79  LFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLC 138

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSV-P 391
              EI KA+    ++  +  G      SY  +I+ LC+ G        L +L +G SV P
Sbjct: 139 FRGEIKKALYFHDQL--VAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKL-EGHSVKP 195

Query: 392 REYTYKLVCDAL 403
               Y  + ++L
Sbjct: 196 DVVMYNTIINSL 207


>gi|356512321|ref|XP_003524868.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Glycine max]
          Length = 733

 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 138/281 (49%), Gaps = 17/281 (6%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVT 173
           A +FY WVER   F H   T  ++  +  R + +      L + +R G +   VT  +  
Sbjct: 102 ALQFYRWVERAGLFTHTPETTLKIVQILGRYSKLNHARCILFNDTRGGVSRAAVTEDAFV 161

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            LI   G  G+V E++  F +MK+      V +Y+ +   + R G +  A+     M L 
Sbjct: 162 SLIDSYGRAGIVQESVKLFKKMKELGLDRTVKSYDALFKVILRRGRYMMAKRYYNAMLLE 221

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ IL+     +GM    R     R +E       M  +G +PDVV YN L
Sbjct: 222 G--VDPTRHTFNILL-----WGMFLSLRLDTAVRFYED------MKSRGILPDVVTYNTL 268

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  +++ A +LF +M  +  +PN +++ + ++ Y     ID A+++  +M+    
Sbjct: 269 INGYFRFKKVDEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGRIDDALKVFEEMKGC-- 326

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           GV P   +++ ++  LC+A ++ EARD L E+V+    P++
Sbjct: 327 GVKPNVVTFSTLLPGLCDAEKMAEARDVLGEMVERYIAPKD 367



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 98/249 (39%), Gaps = 60/249 (24%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++ A+  +  MK     PDV  YN +IN   R    ++A  L   +E+ G    P+V ++
Sbjct: 243 LDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVDEAEKLF--VEMKGRDIVPNVISF 300

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T ++  Y   G           RI +A  +F  M   G  P+VV ++ L+ G C   ++ 
Sbjct: 301 TTMLKGYVAAG-----------RIDDALKVFEEMKGCGVKPNVVTFSTLLPGLCDAEKMA 349

Query: 305 RALELFDDMNKKGCIPN-----------------------------RVT-------YNSF 328
            A ++  +M ++   P                              R++       Y   
Sbjct: 350 EARDVLGEMVERYIAPKDNALFMKMMSCQCKAGDLDAAADVLKAMVRLSIPTEAGHYGVL 409

Query: 329 IRYYSVVNEIDKAIEMMRKM---------QNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           I  +   N  DKA +++ K+         QN +   P  S+Y  +I  LCE GR  +A  
Sbjct: 410 IESFCKANVYDKAEKLLDKLIEKEIVLRPQNDSEMEP--SAYNLMIGYLCEHGRTGKAET 467

Query: 380 FLAELVDGG 388
           F  +L+  G
Sbjct: 468 FFRQLLKKG 476


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 126/299 (42%), Gaps = 34/299 (11%)

Query: 138 MGIVFARGNNVKG--LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM 195
           M  VF  G   KG  L+  +K++     G +    S T LI  L + G  +EA   FY M
Sbjct: 556 MDCVFKAGEIEKGRALFQEIKNL-----GFIPDARSYTILIHGLVKAGFAHEAYELFYTM 610

Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
           K+  C  D  AYN VI+  C+ G  NKA  LLE+M+  G    P V TY  +I    K  
Sbjct: 611 KEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHE--PTVVTYGSVIDGLAKID 668

Query: 256 --------MQTGCRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAYN 291
                    +    K I                  RI EA  +   ++ KG  P+V  +N
Sbjct: 669 RLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWN 728

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
           CL+D   K   I  AL  F  M    C PN +TY+  I     + + +KA    ++MQ  
Sbjct: 729 CLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQ 788

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
               P   +YT +I  L +AG ++EA     +  + G V     Y  + + L+ A   S
Sbjct: 789 GFK-PNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRAS 846



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 116/239 (48%), Gaps = 16/239 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+   + G   +    +  M +  C PD+   N  ++ + + G   K R L ++++ 
Sbjct: 518 TSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKN 577

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            GF   PD  +YTILI    K G              EA  LF  M  +G V D  AYN 
Sbjct: 578 LGF--IPDARSYTILIHGLVKAGFAH-----------EAYELFYTMKEQGCVLDTRAYNT 624

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +IDG CK+ ++ +A +L ++M  KG  P  VTY S I   + ++ +D+A  +  + +  +
Sbjct: 625 VIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK--S 682

Query: 353 HGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
            G+  +   Y+ +I    + GR+ EA   + EL+  G  P  YT+  + DAL  AEE S
Sbjct: 683 KGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEIS 741



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 118/264 (44%), Gaps = 20/264 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  V     T LI+V   EG V+ AL+    MK     PDV  YNV I+   + G  + A
Sbjct: 230 GYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMA 289

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
                +M+  G     D  TYT +I   CK             R+ EA  LF  M     
Sbjct: 290 WKFFHEMKANGL--VLDDVTYTSMIGVLCK-----------ADRLNEAVELFEHMDQNKQ 336

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           VP   AYN +I G     + E A  L +   +KGCIP+ V+YN  +       ++D+A++
Sbjct: 337 VPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALK 396

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              +M+     +P  S+Y  +I  LC+AG++  A      + D G  P   T  ++ D L
Sbjct: 397 KFEEMKK--DAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRL 454

Query: 404 NAAEEPSLLDDGLRKRIRDGIEYR 427
             A+    LDD     I +G++++
Sbjct: 455 CKAQR---LDDAC--SIFEGLDHK 473



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 125/268 (46%), Gaps = 28/268 (10%)

Query: 160 RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
           +R  G + +  S  C++  LG +G V+EAL  F  MK+    P++  YN++I+ LC+ G 
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKK-DAIPNLSTYNIMIDMLCKAGK 424

Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY-----------GM-QTGCR------ 261
              A  + + M+  G    P+V T  I++   CK            G+    CR      
Sbjct: 425 LETALVVRDAMKDAGLF--PNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTY 482

Query: 262 ----KAIRR--RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
               + + R  R+ EA  L+  ML    +P+ V Y  LI    K  R E   +++++M +
Sbjct: 483 CSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLR 542

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
            GC P+ +  N+++       EI+K   + ++++NL   +P + SYT +IH L +AG   
Sbjct: 543 LGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGF-IPDARSYTILIHGLVKAGFAH 601

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           EA +    + + G V     Y  V D  
Sbjct: 602 EAYELFYTMKEQGCVLDTRAYNTVIDGF 629



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 116/273 (42%), Gaps = 28/273 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V   W F  +M  + NG ++   + T +I VL +   +NEA+  F  M Q +  
Sbjct: 280 FGKAGKVDMAWKFFHEM--KANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV 337

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P  YAYN +I      G F  A  LLE+    G  C P V +Y  ++S   + G      
Sbjct: 338 PCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG--CIPSVVSYNCILSCLGRKGQVDEAL 395

Query: 262 KAIRRR-----------------IWEANHLFRLMLFK------GFVPDVVAYNCLIDGCC 298
           K                      + +A  L   ++ +      G  P+V+  N ++D  C
Sbjct: 396 KKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLC 455

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K  R++ A  +F+ ++ K C P+ VTY S I        +D+A ++  +M + N  +P +
Sbjct: 456 KAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQ-IPNA 514

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
             YT +I    + GR  +      E++  G  P
Sbjct: 515 VVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSP 547



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 132/309 (42%), Gaps = 23/309 (7%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           +N A  ++ W ER  D  H       + +V AR      L   L++MS  G G     S+
Sbjct: 110 VNNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFG----PSN 165

Query: 172 VTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
            TC+  VL   +   + EA      M++ + RP   AY  +I AL    + +    L +Q
Sbjct: 166 NTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQ 225

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M+  G+    +V+ +T LI  + + G           R+  A  L   M      PDVV 
Sbjct: 226 MQELGY--AVNVHLFTTLIRVFAREG-----------RVDAALSLLDEMKSNSLEPDVVL 272

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN  ID   K  +++ A + F +M   G + + VTY S I      + +++A+E+   M 
Sbjct: 273 YNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMD 332

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
             N  VP + +Y  +I     AG+  +A   L      G +P   +Y  +   L    + 
Sbjct: 333 Q-NKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQ- 390

Query: 410 SLLDDGLRK 418
             +D+ L+K
Sbjct: 391 --VDEALKK 397



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 13/145 (8%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CL+  L +   ++EAL  F  MK  +C P+   Y+++I+ LC++  FNKA    ++M+  
Sbjct: 729 CLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQ 788

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           GF+  P+V+TYT +IS   K G            I EA+ LF     KG V D   YN +
Sbjct: 789 GFK--PNVFTYTTMISGLAKAG-----------NIVEADTLFEKFKEKGGVADSAIYNAI 835

Query: 294 IDGCCKTYRIERALELFDDMNKKGC 318
           I+G     R   A  LF++   KGC
Sbjct: 836 IEGLSNANRASDAYRLFEEARLKGC 860



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI   G+ G ++EA      + Q    P+VY +N +++AL +    ++A    + M+ 
Sbjct: 693 SSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK- 751

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +C P+  TY+ILI   CK            R+  +A   ++ M  +GF P+V  Y  
Sbjct: 752 -DLKCTPNYITYSILIHGLCKI-----------RKFNKAFVFWQEMQKQGFKPNVFTYTT 799

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           +I G  K   I  A  LF+   +KG + +   YN+ I   S  N    A  +  +
Sbjct: 800 MISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEE 854


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++LML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 100/201 (49%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +     R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWSLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M   G +PN V
Sbjct: 186 ---DLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ + M  Q+L+   P   +Y  +I+ LC+ G + +A+D +
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKLMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQDLI 299

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+   G  P + TY  + D 
Sbjct: 300 DEMSMKGLKPDKITYTTLIDG 320



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG +    + T LI    + G V+ A+  +  
Sbjct: 217 CKE-----SKMDDANELFDEMLD-----NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKL 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK--PDKITYTTLIDGNCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 393

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 127/247 (51%), Gaps = 19/247 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L+  L ++G V +A      M + R  P++  YN +++    V   NKA+ L   +
Sbjct: 125 TFTTLVDGLCKDGEVKKARNVLAIMIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTI 184

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            L G    P+V +Y ++I+  CK  M           + EA +LF+ M  K  VPD VAY
Sbjct: 185 SLRGM--TPNVRSYKVMINGLCKNKM-----------VDEAANLFKEMHSKNMVPDTVAY 231

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LIDG CK+ RI    +   +M+ +G   N +TYNS +      +++DKAI ++ K++ 
Sbjct: 232 NSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLLDGLCKNHQVDKAITLLTKIK- 290

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
            N G+ P   +YT ++  LC+ GR+ +A++   +L++ G       Y ++   +N   + 
Sbjct: 291 -NQGIRPNIYTYTILVDGLCKNGRLRDAQEVYQDLLNKGYQLDARIYTVM---INGLCKE 346

Query: 410 SLLDDGL 416
             LD+ L
Sbjct: 347 GFLDEAL 353



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 112/243 (46%), Gaps = 28/243 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR--------------VGNF 220
           +I +L ++ LV++    +  M   +  PDV  YN +I +L                +G  
Sbjct: 45  IIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKIRKEYGFSILGQM 104

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            +A  LL QM        P++ T+T L+   CK G            + +A ++  +M+ 
Sbjct: 105 KEAVGLLNQM--TSKTVTPNIRTFTTLVDGLCKDG-----------EVKKARNVLAIMIK 151

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +   P++V YN L+DG      + +A +LF+ ++ +G  PN  +Y   I        +D+
Sbjct: 152 QRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKMVDE 211

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A  + ++M + N  VP + +Y  +I  LC++ R+ +  DF+ E+ D G      TY  + 
Sbjct: 212 AANLFKEMHSKNM-VPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLL 270

Query: 401 DAL 403
           D L
Sbjct: 271 DGL 273



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 10/215 (4%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS--- 250
            +++   +PDV  YN +I+ LC+    +    L  +M     +  PDV TY  LI S   
Sbjct: 29  HIERLLVKPDVVMYNTIIDILCKDKLVSDGCDLYSEM--IDKKIYPDVVTYNTLIYSLLN 86

Query: 251 --YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
             Y K   + G   +I  ++ EA  L   M  K   P++  +  L+DG CK   +++A  
Sbjct: 87  FVYIKIRKEYGF--SILGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKKARN 144

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           +   M K+   PN VTYNS +  Y +V E++KA ++   + +L    P   SY  +I+ L
Sbjct: 145 VLAIMIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTI-SLRGMTPNVRSYKVMINGL 203

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           C+   V EA +   E+     VP    Y  + D L
Sbjct: 204 CKNKMVDEAANLFKEMHSKNMVPDTVAYNSLIDGL 238



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 16/143 (11%)

Query: 199 RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
           R +P ++  YN +++ LC+    +KA  LL +++  G R  P++YTYTIL+   CK G  
Sbjct: 257 RGQPANIITYNSLLDGLCKNHQVDKAITLLTKIKNQGIR--PNIYTYTILVDGLCKNG-- 312

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    R+ +A  +++ +L KG+  D   Y  +I+G CK   ++ AL L   M    
Sbjct: 313 ---------RLRDAQEVYQDLLNKGYQLDARIYTVMINGLCKEGFLDEALSLLSKMEDNK 363

Query: 318 CIPNRVTYNSFIR--YYSVVNEI 338
           C P+ VTY   IR  + S  NEI
Sbjct: 364 CTPDGVTYEITIRALFESDRNEI 386



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 19/148 (12%)

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
           +  NH+ RL++     PDVV YN +ID  CK   +    +L+ +M  K   P+ VTYN+ 
Sbjct: 25  FHLNHIERLLV----KPDVVMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTL 80

Query: 329 IRY--------------YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           I                +S++ ++ +A+ ++ +M +     P   ++T ++  LC+ G V
Sbjct: 81  IYSLLNFVYIKIRKEYGFSILGQMKEAVGLLNQMTS-KTVTPNIRTFTTLVDGLCKDGEV 139

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDA 402
            +AR+ LA ++     P   TY  + D 
Sbjct: 140 KKARNVLAIMIKQRVEPNIVTYNSLMDG 167



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 17/155 (10%)

Query: 151 LWDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
           +WDF+ +M  RG    ++T +S   L+  L +   V++A+    ++K    RP++Y Y +
Sbjct: 247 VWDFIGEMHDRGQPANIITYNS---LLDGLCKNHQVDKAITLLTKIKNQGIRPNIYTYTI 303

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +++ LC+ G    A+ + + +   G++   D   YT++I+  CK G            + 
Sbjct: 304 LVDGLCKNGRLRDAQEVYQDLLNKGYQL--DARIYTVMINGLCKEGF-----------LD 350

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           EA  L   M      PD V Y   I    ++ R E
Sbjct: 351 EALSLLSKMEDNKCTPDGVTYEITIRALFESDRNE 385


>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g19290-like [Cucumis
           sativus]
          Length = 885

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 131/293 (44%), Gaps = 16/293 (5%)

Query: 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           GL +   + + +   F    +  TC  + I   R  ++   W  L DM  +G    VT  
Sbjct: 481 GLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFP--VTNM 538

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L+      G VN A + +  MK     PD  A+   IN LC  G    A  +   M
Sbjct: 539 AFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDM 598

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              GF   P+ + Y  LI  +CK G           ++ EA  L R M  +G +PD+   
Sbjct: 599 LRKGF--VPNNFVYNSLIGGFCKVG-----------KLNEALKLVREMNKRGLLPDIFTV 645

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N +I G CK  R++ A+E F DM + G  P+ VTYN+ I  Y    ++  A ++M KM +
Sbjct: 646 NMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSD 705

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +   P  ++Y   IH  C   ++  A   L EL+  G VP   TY  + +A+
Sbjct: 706 -SGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAV 757



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 22/255 (8%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N  + LW+ +K     G G      +    I  L   GL+ +A   F  M +    P+ +
Sbjct: 554 NMAESLWNEMK-----GRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNF 608

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            YN +I   C+VG  N+A  L+ +M   G    PD++T  ++I   CK G          
Sbjct: 609 VYNSLIGGFCKVGKLNEALKLVREMNKRGLL--PDIFTVNMIICGLCKQG---------- 656

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            R+  A   F  M   G  PD+V YN LIDG CK + +  A +L   M+  G  P+  TY
Sbjct: 657 -RMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTY 715

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE-ARDFLAEL 384
           N  I  Y  V +I++A+ ++ ++ ++   VP + +Y  +I+A+C    +L+ A    A+L
Sbjct: 716 NIRIHGYCTVRKINRAVMILEELISVGI-VPNTVTYNTMINAVCNV--ILDHAMILTAKL 772

Query: 385 VDGGSVPREYTYKLV 399
           +    VP   T  ++
Sbjct: 773 LKMAFVPNTVTVNVL 787



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 114/264 (43%), Gaps = 18/264 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R  +   +W    D+ R+G        +   LI     +G      A  + M +FRC PD
Sbjct: 234 RAGDCGAVWKLFGDVVRKG--PCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPD 291

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           VY+YN+VINA C  G  + A  LL  M   G  C P + T+  +I ++CK G     RK 
Sbjct: 292 VYSYNIVINANCLKGQSSYALHLLNLMIENG--CKPSIATFCTIIDAFCKEGNVELARK- 348

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
                      F  +   G   + + YN +I G  K   I +A  LF++M  K  +P+ +
Sbjct: 349 ----------YFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGI 398

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI-IHALCEAGRVLEARDFLA 382
           T+N+ +  +    + +    ++R +     G+   SS   + +  LC AGR  EA   L 
Sbjct: 399 TFNTLVAGHYRYGKEEDGNRLLRDLS--VSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLE 456

Query: 383 ELVDGGSVPREYTYKLVCDALNAA 406
            L++ G  P    +  +  A   A
Sbjct: 457 NLLEKGIPPSVVAFNSIIAAYGNA 480



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 113/251 (45%), Gaps = 14/251 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I   G  GL   A   +  M +F   P     + ++ +L R G+ ++A   L  M   G
Sbjct: 473 IIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKG 532

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F  P     +T+L+  Y + G            +  A  L+  M  +G  PD VA+   I
Sbjct: 533 F--PVTNMAFTVLLDGYFRIG-----------AVNMAESLWNEMKGRGVFPDAVAFAAFI 579

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G C +  +  A ++F DM +KG +PN   YNS I  +  V ++++A++++R+M N    
Sbjct: 580 NGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREM-NKRGL 638

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
           +P   +   II  LC+ GR+  A +   ++   G  P   TY  + D    A +    DD
Sbjct: 639 LPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADD 698

Query: 415 GLRKRIRDGIE 425
            + K    G E
Sbjct: 699 LMMKMSDSGWE 709



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 18/255 (7%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           S+++ L ++L   G        F  + +    P+ + +N++I   CR G       LL  
Sbjct: 223 SAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHV 282

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M    FRC PDVY+Y I+I++ C  G  +            A HL  LM+  G  P +  
Sbjct: 283 M--GKFRCEPDVYSYNIVINANCLKGQSS-----------YALHLLNLMIENGCKPSIAT 329

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           +  +ID  CK   +E A + FD++   G   N + YN  I  Y    +I +A  +  +M+
Sbjct: 330 FCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMR 389

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG----SVPREYTYKLVCDALNA 405
             +  VP   ++  ++      G+  +    L +L   G    S   + T   +C A   
Sbjct: 390 TKDI-VPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRY 448

Query: 406 AEEPSLLDDGLRKRI 420
            E   LL++ L K I
Sbjct: 449 DEAMKLLENLLEKGI 463



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 18/224 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            +++M++RG   L    +V  +I  L ++G +  A+ TF  M +    PD+  YN +I+ 
Sbjct: 629 LVREMNKRG--LLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDG 686

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+  +   A  L+ +M   G+   PD+ TY I I  YC             R+I  A  
Sbjct: 687 YCKAFDVGGADDLMMKMSDSGWE--PDLTTYNIRIHGYCTV-----------RKINRAVM 733

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +   ++  G VP+ V YN +I+  C    ++ A+ L   + K   +PN VT N  +  + 
Sbjct: 734 ILEELISVGIVPNTVTYNTMINAVCNVI-LDHAMILTAKLLKMAFVPNTVTVNVLLSQFC 792

Query: 334 VVNEIDKAIEMMRKMQ--NLNHGVPTSSSYTPIIHALCEAGRVL 375
                +KAI   +K+   +L+    T         AL E G V+
Sbjct: 793 KQGMPEKAIFWGQKLSEIHLDFDETTHKLMNRAYRALEEGGVVI 836


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 121/253 (47%), Gaps = 27/253 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L ++ LV+EAL  F  +K    RPDV+ Y+++++ LC      +A  L  +M    
Sbjct: 230 IIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEM--MS 287

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIR------------------------RRIWE 270
               PDV T+ IL+   CK GM +  +  I+                         +++E
Sbjct: 288 LNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFE 347

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  +F  M+ KG +P+VV+YN LI+G CK  RI+ A ELFD+M+ +G IPN   YN+ I 
Sbjct: 348 ARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLIS 407

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                    +A E+ + MQ      P   + T ++ +LC+ G +  A      + D    
Sbjct: 408 GLCQAGRHCEARELFKDMQAQGCS-PDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLK 466

Query: 391 PREYTYKLVCDAL 403
           P   TY ++  A+
Sbjct: 467 PNLVTYDILIRAM 479



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 153/370 (41%), Gaps = 76/370 (20%)

Query: 108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGEL 166
             L L+K  E    +ER  D FH  +        F+R   V   +  L  + + G   + 
Sbjct: 102 TVLSLSKRIELLR-IER--DVFHFNILIN----CFSRLQRVDFAFSVLGKIIKLGFEPDA 154

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           VT SS   LI  L  E     A+  F  M     +P+++ YN +I   C++G    A  L
Sbjct: 155 VTFSS---LINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGL 211

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC--------RKAIRRRIW--------- 269
           L++M+  G R  PD+  Y  +I   CK  + +           K +R  ++         
Sbjct: 212 LKKMDKAGGR--PDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGL 269

Query: 270 -------EANHLFRLMLFKGFVPDVVAYNCLIDGCCK-----------TYRIERALE--- 308
                  EA+ LF  M+    +PDVV +N L+D  CK              IE+ +E   
Sbjct: 270 CNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNY 329

Query: 309 ---------------------LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
                                +FD M  KGC+PN V+YN  I  Y     ID+A E+  +
Sbjct: 330 ATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDE 389

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           M +    +P + +Y  +I  LC+AGR  EAR+   ++   G  P   T  ++ D+L    
Sbjct: 390 M-SFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLC--- 445

Query: 408 EPSLLDDGLR 417
           +   LD+ LR
Sbjct: 446 KLGYLDNALR 455



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 17/231 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + +AL +F  M      P +  ++ +++AL R+ ++     L +++EL   R   DV+ +
Sbjct: 65  IEDALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIEL--LRIERDVFHF 122

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI+ + +            +R+  A  +   ++  GF PD V ++ LI+G C   +  
Sbjct: 123 NILINCFSRL-----------QRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFA 171

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           RA+E FD+M   G  PN  TYN+ I+ +  + +   A+ +++KM     G P    Y  I
Sbjct: 172 RAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAG-GRPDIVIYNTI 230

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLL 412
           I  LC+   V EA D  +E+   G  P  +TY ++   L   +  EE S L
Sbjct: 231 IDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASAL 281



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 13/121 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA   F  M      P+ + YN +I+ LC+ G   +AR L + M+  G  C PD+ T 
Sbjct: 380 IDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQG--CSPDLVTC 437

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           TIL+ S CK G            +  A  LFR M      P++V Y+ LI    K+ +I 
Sbjct: 438 TILLDSLCKLGY-----------LDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKIY 486

Query: 305 R 305
           R
Sbjct: 487 R 487


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 126/299 (42%), Gaps = 34/299 (11%)

Query: 138 MGIVFARGNNVKG--LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM 195
           M  VF  G   KG  L+  +K++     G +    S T LI  L + G  +EA   FY M
Sbjct: 556 MDCVFKAGEIEKGRALFQEIKNL-----GFIPDARSYTILIHGLVKAGFAHEAYELFYTM 610

Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
           K+  C  D  AYN VI+  C+ G  NKA  LLE+M+  G    P V TY  +I    K  
Sbjct: 611 KEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHE--PTVVTYGSVIDGLAKID 668

Query: 256 --------MQTGCRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAYN 291
                    +    K I                  RI EA  +   ++ KG  P+V  +N
Sbjct: 669 RLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWN 728

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
           CL+D   K   I  AL  F  M    C PN +TY+  I     + + +KA    ++MQ  
Sbjct: 729 CLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQ 788

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
               P   +YT +I  L +AG ++EA     +  + G V     Y  + + L+ A   S
Sbjct: 789 GFK-PNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRAS 846



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 116/239 (48%), Gaps = 16/239 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+   + G   +    +  M +  C PD+   N  ++ + + G   K R L ++++ 
Sbjct: 518 TSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKN 577

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            GF   PD  +YTILI    K G              EA  LF  M  +G V D  AYN 
Sbjct: 578 LGF--IPDARSYTILIHGLVKAGFAH-----------EAYELFYTMKEQGCVLDTRAYNT 624

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +IDG CK+ ++ +A +L ++M  KG  P  VTY S I   + ++ +D+A  +  + +  +
Sbjct: 625 VIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK--S 682

Query: 353 HGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
            G+  +   Y+ +I    + GR+ EA   + EL+  G  P  YT+  + DAL  AEE S
Sbjct: 683 KGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEIS 741



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 118/264 (44%), Gaps = 20/264 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  V     T LI+V   EG V+ AL+    MK     PDV  YNV I+   + G  + A
Sbjct: 230 GYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMA 289

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
                +M+  G     D  TYT +I   CK             R+ EA  LF  M     
Sbjct: 290 WKXFHEMKANGL--VLDDVTYTSMIGVLCK-----------ADRLNEAVELFEHMDQNKQ 336

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           VP   AYN +I G     + E A  L +   +KGCIP+ V+YN  +       ++D+A++
Sbjct: 337 VPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALK 396

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              +M+     +P  S+Y  +I  LC+AG++  A      + D G  P   T  ++ D L
Sbjct: 397 KFEEMK--KDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRL 454

Query: 404 NAAEEPSLLDDGLRKRIRDGIEYR 427
             A+    LDD     I +G++++
Sbjct: 455 CKAQR---LDDAC--SIFEGLDHK 473



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 112/257 (43%), Gaps = 21/257 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V   W    +M  + NG ++   + T +I VL +   +NEA+  F  M Q +  
Sbjct: 280 FGKAGKVDMAWKXFHEM--KANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV 337

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P  YAYN +I      G F  A  LLE+    G  C P V +Y  ++S   + G      
Sbjct: 338 PCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG--CIPSVVSYNCILSCLGRKG------ 389

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA   F  M  K  +P++  YN +ID  CK  ++E AL + D M   G  PN
Sbjct: 390 -----QVDEALKKFEEMK-KDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPN 443

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV--PTSSSYTPIIHALCEAGRVLEARD 379
            +T N  +        +D A  +    + L+H    P + +Y  +I  L   GRV EA  
Sbjct: 444 VITVNIMVDRLCKAQRLDDACSI---FEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYK 500

Query: 380 FLAELVDGGSVPREYTY 396
              +++D   +P    Y
Sbjct: 501 LYEQMLDANQIPNAVVY 517



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 125/268 (46%), Gaps = 28/268 (10%)

Query: 160 RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
           +R  G + +  S  C++  LG +G V+EAL  F  MK+    P++  YN++I+ LC+ G 
Sbjct: 366 QRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKK-DAIPNLSTYNIMIDMLCKAGK 424

Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY-----------GM-QTGCR------ 261
              A  + + M+  G    P+V T  I++   CK            G+    CR      
Sbjct: 425 LETALVVRDAMKDAGLF--PNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTY 482

Query: 262 ----KAIRR--RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
               + + R  R+ EA  L+  ML    +P+ V Y  LI    K  R E   +++++M +
Sbjct: 483 CSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLR 542

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
            GC P+ +  N+++       EI+K   + ++++NL   +P + SYT +IH L +AG   
Sbjct: 543 LGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGF-IPDARSYTILIHGLVKAGFAH 601

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           EA +    + + G V     Y  V D  
Sbjct: 602 EAYELFYTMKEQGCVLDTRAYNTVIDGF 629



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 132/309 (42%), Gaps = 23/309 (7%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           +N A  ++ W ER  D  H       + +V AR      L   L++MS  G G     S+
Sbjct: 110 VNNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFG----PSN 165

Query: 172 VTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
            TC+  VL   +   + EA      M++ + RP   AY  +I AL    + +    L +Q
Sbjct: 166 NTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQ 225

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M+  G+    +V+ +T LI  + + G           R+  A  L   M      PDVV 
Sbjct: 226 MQELGY--AVNVHLFTTLIRVFAREG-----------RVDAALSLLDEMKSNSLEPDVVL 272

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN  ID   K  +++ A + F +M   G + + VTY S I      + +++A+E+   M 
Sbjct: 273 YNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMD 332

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
             N  VP + +Y  +I     AG+  +A   L      G +P   +Y  +   L    + 
Sbjct: 333 Q-NKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQ- 390

Query: 410 SLLDDGLRK 418
             +D+ L+K
Sbjct: 391 --VDEALKK 397



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 75/145 (51%), Gaps = 13/145 (8%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CL+  L +   ++EAL  F  MK  +C P+   Y+++I+ LC++  FNKA    ++M+  
Sbjct: 729 CLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQ 788

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           GF+  P+V+TYT +IS   K G            I EA+ LF     KG V D   YN +
Sbjct: 789 GFK--PNVFTYTTMISGLAKAG-----------NIVEADTLFEKFKEKGGVADSAIYNAI 835

Query: 294 IDGCCKTYRIERALELFDDMNKKGC 318
           I+G     R   A  LF++   KGC
Sbjct: 836 IEGLSNANRASDAYRLFEEARLKGC 860



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 13/169 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI   G+ G ++EA      + Q    P+VY +N +++AL +    ++A    + M+ 
Sbjct: 693 SSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK- 751

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +C P+  TY+ILI   CK            R+  +A   ++ M  +GF P+V  Y  
Sbjct: 752 -DLKCTPNYITYSILIHGLCKI-----------RKFNKAFVFWQEMQKQGFKPNVFTYTT 799

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           +I G  K   I  A  LF+   +KG + +   YN+ I   S  N    A
Sbjct: 800 MISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDA 848


>gi|255660902|gb|ACU25620.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 484

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFXVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPTD 290



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC      +AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEARSIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS C  G            +  A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLISSQCNSG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGVLIENFCKAGQYDQAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L+  G
Sbjct: 362 QSTL-HLEP--SAYNPMIEYLCNNGQAAKAEALVRQLLKLG 399


>gi|414883803|tpg|DAA59817.1| TPA: hypothetical protein ZEAMMB73_625576 [Zea mays]
          Length = 350

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 124/262 (47%), Gaps = 24/262 (9%)

Query: 175 LIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL- 232
           LIK L +     +A+   F RM +    PDV++YN +I  LC      +A  LL  M   
Sbjct: 70  LIKGLCDGKRTGDAMDMVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTAN 129

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G+ C PDV +Y I+I    K G            + +A  LF  M  +GF PD+V Y+ 
Sbjct: 130 GGYNCSPDVVSYNIVIDGLFKEG-----------EVDKAYFLFHEMPGQGFPPDLVTYSS 178

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ--N 350
           +IDG CK   +++A      M  KG +PN   YNS I  Y  + ++ +A+ +++KM    
Sbjct: 179 VIDGLCKAQAMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGG 238

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA-AEEP 409
           L   V T   Y  +I   C+ GR  EAR     +V  G  P   TY   C  L+  A + 
Sbjct: 239 LQLNVVT---YNMLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTY---CSLLHGYATKG 292

Query: 410 SLLD--DGLRKRIRDGIEYRFR 429
           +L+D  D L   IRDGI    R
Sbjct: 293 ALVDMHDLLDLMIRDGIPIEHR 314



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 16/222 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   +I  L +EG V++A   F+ M      PD+  Y+ VI+ LC+    +KA   L+QM
Sbjct: 140 SYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQM 199

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P+   Y  LI  YC  G           ++ EA  L + M   G   +VV Y
Sbjct: 200 LYKGVM--PNTRPYNSLIHGYCSLG-----------QLVEAVRLLKKMSGGGLQLNVVTY 246

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LID  CK  R   A  +FD M ++G  PN  TY S +  Y+    +    +++  M  
Sbjct: 247 NMLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYATKGALVDMHDLLDLM-- 304

Query: 351 LNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           +  G+P     +  +I+A  +   V +A    AE+   G  P
Sbjct: 305 IRDGIPIEHRVFNILIYAYAKHETVDKAMAVFAEMRQNGLRP 346



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 13/161 (8%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G +  T     LI      G + EA+    +M     + +V  YN++I+  C++G   +A
Sbjct: 203 GVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEA 262

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           R + + M   G +  P+  TY  L+  Y           A +  + + + L  LM+  G 
Sbjct: 263 RSIFDSMVRRGQK--PNATTYCSLLHGY-----------ATKGALVDMHDLLDLMIRDGI 309

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             +   +N LI    K   +++A+ +F +M + G  PN V+
Sbjct: 310 PIEHRVFNILIYAYAKHETVDKAMAVFAEMRQNGLRPNLVS 350


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 130/267 (48%), Gaps = 21/267 (7%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMK 196
           +G++   G+  + L  F ++M R G   +V  + + T LI      G +++AL     M 
Sbjct: 404 IGVLARNGHLYQALMHF-REMERSG---IVPDNVIYTILIDGFCRNGALSDALKMRDEML 459

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
              C  DV  YN  +N LC+   F  A  L  +M   G    PD YT+T LI  YCK G 
Sbjct: 460 ARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGM--VPDFYTFTTLIRGYCKDG- 516

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                      + +A +LF  M+     PD V YN LIDG CK   + RA EL+DDM +K
Sbjct: 517 ----------NMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRK 566

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVL 375
             IP+ ++Y + +  +     + +A+ +  +M  L  G+ P   +   +I   C +G + 
Sbjct: 567 DIIPDHISYGTVLNGFCSSGLLPEALNLCDQM--LEKGIRPNLVTCNTLIKGYCRSGDMP 624

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDA 402
           +A ++L++++  G +P  ++Y  + D 
Sbjct: 625 KAYEYLSKMISNGIIPDSFSYNTLIDG 651



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 118/253 (46%), Gaps = 19/253 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+++   + ++ EA   F  M +    PD+ +++ +I  L R G+  +A     +ME 
Sbjct: 367 TLLVEICRRDNIL-EAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMER 425

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PD   YTILI  +C+ G       A++ R          ML +G   DVV YN 
Sbjct: 426 SGI--VPDNVIYTILIDGFCRNG---ALSDALKMR--------DEMLARGCFMDVVTYNT 472

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
            ++G CK      A  LF++M ++G +P+  T+ + IR Y     +DKA+ +   M   N
Sbjct: 473 FLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTN 532

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA----EE 408
              P   +Y  +I   C+AG +  A++   +++    +P   +Y  V +   ++    E 
Sbjct: 533 LK-PDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEA 591

Query: 409 PSLLDDGLRKRIR 421
            +L D  L K IR
Sbjct: 592 LNLCDQMLEKGIR 604



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 113/247 (45%), Gaps = 27/247 (10%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI+   ++G +++AL  F  M +   +PD   YN +I+  C+ G   +A+ L + M
Sbjct: 504 TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM--------QTGCRKAIRRRIWEANHLFR------ 276
                   PD  +Y  +++ +C  G+             K IR  +   N L +      
Sbjct: 564 IRKDI--IPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSG 621

Query: 277 ----------LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
                      M+  G +PD  +YN LIDG  K   +E+A  L ++M K+G   N +TYN
Sbjct: 622 DMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYN 681

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             +  +    ++ +A +++RKM  +    P  ++Y+ +I+       + EA  F  E++ 
Sbjct: 682 LILNGFCAEGKMQEAEQVLRKMIEIGIN-PDGATYSSLINGHVSQDNMKEAFRFHDEMLQ 740

Query: 387 GGSVPRE 393
            G VP +
Sbjct: 741 RGLVPDD 747



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 116/270 (42%), Gaps = 33/270 (12%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G  V+ ++   L+  L   G V+ A   +  + +     +VY  N+++NALC+   F
Sbjct: 214 RRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKF 273

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----------------MQTG----- 259
               F L  ME  G     D+ TY  LI++YC+ G                M+ G     
Sbjct: 274 ENVMFFLSDMEGKG--VFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYN 331

Query: 260 ------CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                 C+     R   A  +   ML  G  P+   YN L+   C+   I  A E+FD+M
Sbjct: 332 AILYGLCKIGKYDR---AKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEM 388

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
           +++G +P+ V+++S I   +    + +A+   R+M+  +  VP +  YT +I   C  G 
Sbjct: 389 SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMER-SGIVPDNVIYTILIDGFCRNGA 447

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + +A     E++  G      TY    + L
Sbjct: 448 LSDALKMRDEMLARGCFMDVVTYNTFLNGL 477



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 120/288 (41%), Gaps = 33/288 (11%)

Query: 119 YHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRR-GNGELVTTSSVTCLIK 177
           YH    F +F H+  +   M     RG  +      +  M R+ G   +    S+     
Sbjct: 126 YH----FPNFKHSSXSLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVKVVESLISTCF 181

Query: 178 VLGEEGLVNEALA-TFYRMKQFRCRPDVY-------------AYNVVINALCRVGNFNKA 223
             G  GL+ + L  T+ + K+ R   + +             A N ++  L R G  + A
Sbjct: 182 YFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLA 241

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             +  ++   G     +VYT  I++++ CK            R+          M  KG 
Sbjct: 242 WEIYGEVVRGGIEL--NVYTLNIMVNALCK-----------DRKFENVMFFLSDMEGKGV 288

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
             D+V YN LI+  C+   +E A +L +  + +G  P  +TYN+ +     + + D+A +
Sbjct: 289 FADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKD 348

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           ++ +M  L    P +++Y  ++  +C    +LEA++   E+   G +P
Sbjct: 349 VLIEMLQLGL-TPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLP 395



 Score = 42.0 bits (97), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 15/156 (9%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           N +TC  +   + R  ++   +++L  M    NG +  + S   LI    +E  + +A  
Sbjct: 606 NLVTCNTLIKGYCRSGDMPKAYEYLSKMI--SNGIIPDSFSYNTLIDGYLKEANLEKAFI 663

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
               M++   + ++  YN+++N  C  G   +A  +L +M   G    PD  TY+ LI+ 
Sbjct: 664 LINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGIN--PDGATYSSLING 721

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
           +     Q   ++A R            ML +G VPD
Sbjct: 722 HVS---QDNMKEAFR--------FHDEMLQRGLVPD 746


>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 412

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 110/205 (53%), Gaps = 16/205 (7%)

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           EG V EA      M +    P+   Y+ +++  C V   N A+ +   M L G     +V
Sbjct: 148 EGNVKEAKNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTA--NV 205

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
           ++Y I+I+ +CK  M             EA +LF  M  +  +PDVV YN LI+G CK+ 
Sbjct: 206 WSYNIMINGFCKIKMTD-----------EAMNLFEEMHCRKLIPDVVTYNSLINGLCKSG 254

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
           +I  AL+L D+M+ +G  P+ +TY+S +      +++DKAI +++ ++  + G+ P   +
Sbjct: 255 KISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHQVDKAIALLKNLK--DQGIRPNMYT 312

Query: 361 YTPIIHALCEAGRVLEARDFLAELV 385
           YT +I  LC+ GR+ +A +   +L+
Sbjct: 313 YTILIDGLCKGGRLEDAHNIFEDLL 337



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 23/245 (9%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTS--SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           NN KG++     MS RG    VT +  S   +I    +  + +EA+  F  M   +  PD
Sbjct: 187 NNAKGIF---STMSLRG----VTANVWSYNIMINGFCKIKMTDEAMNLFEEMHCRKLIPD 239

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V  YN +IN LC+ G  + A  L+++M   G   PPD+ TY+ L+ + CK          
Sbjct: 240 VVTYNSLINGLCKSGKISYALKLVDEMHDRG--QPPDIITYSSLLDALCK---------- 287

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              ++ +A  L + +  +G  P++  Y  LIDG CK  R+E A  +F+D+  KG      
Sbjct: 288 -NHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVN 346

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           TY   I  +      D+A+ ++ KM++ N   P + +Y  II +L +     +A + L E
Sbjct: 347 TYTVMIHGFCNKGLFDEALALLSKMKD-NSCFPNALTYEIIIRSLFDNDENDKAENLLRE 405

Query: 384 LVDGG 388
           ++  G
Sbjct: 406 MITRG 410


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 120/256 (46%), Gaps = 18/256 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F + + V    + L  M+ RG    +VT +S+   I  L +     EA     ++     
Sbjct: 303 FCKASRVDEALELLHGMASRGCTPNVVTFNSI---IDGLCKSDRSGEAFQIALQVYNRML 359

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD   +N++I   C+ GNF +A  L E+M     +  PDV T+  LI   CK G     
Sbjct: 360 VPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQ--PDVMTFGALIDGLCKAG----- 412

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++  A  +  LM   G  P+VV YN L+ G CK+ RIE   E  ++M   GC+P
Sbjct: 413 ------QVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVP 466

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
             +TY S +      +  D A++++ K+++     P + +Y  ++  L ++G+  +A   
Sbjct: 467 ESMTYGSLVYALCRASRTDDALQLVSKLKSFGWD-PDTVTYNILVDGLWKSGKTEQAITV 525

Query: 381 LAELVDGGSVPREYTY 396
           L E+V  G  P  +T+
Sbjct: 526 LEEMVGKGHQPDSFTF 541



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 142/308 (46%), Gaps = 31/308 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             + N +    +  +++ +RG+   V T +   LI  L + G + EA      M    C 
Sbjct: 91  LCKSNELGAGMELFEELVKRGHHPDVVTYNT--LIDSLCKAGDLEEARRLHGGMSSRGCV 148

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V  Y+V+IN LC+VG  ++AR L+++M        P++ TY   +   CK  M     
Sbjct: 149 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 208

Query: 262 KAIRR------RIWEANHLFRL------------------MLFKGFVPDVVAYNCLIDGC 297
           + +R       R+      F                    M+  G+VP+VV YN L++G 
Sbjct: 209 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGL 268

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           CK  ++ERA  + + M  KG  P+ +TY+  +  +   + +D+A+E++  M +     P 
Sbjct: 269 CKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMAS-RGCTPN 327

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLD 413
             ++  II  LC++ R  EA     ++ +   VP + T+ ++    C A N  +  +L +
Sbjct: 328 VVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFE 387

Query: 414 DGLRKRIR 421
           + + K ++
Sbjct: 388 EMVAKNMQ 395



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 138/288 (47%), Gaps = 37/288 (12%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           L+D S R + + VT S+   LI  L + G  +EA         +   P+V  YN ++N L
Sbjct: 214 LRDGSLRVSPDTVTFST---LIDGLCKCGQTDEACNDDMIAGGYV--PNVVTYNALVNGL 268

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-----------YGMQT-GCRK 262
           C+     +A  ++E M   G    PDV TY++L+ ++CK           +GM + GC  
Sbjct: 269 CKADKMERAHAMIESMVDKGVT--PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 326

Query: 263 AI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            +              R  EA  +   +  +  VPD V +N LI G CK    E+A  LF
Sbjct: 327 NVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALF 386

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALC 369
           ++M  K   P+ +T+ + I       +++ A +++  M NL  GVP +  +Y  ++H LC
Sbjct: 387 EEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNL--GVPPNVVTYNVLVHGLC 444

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           ++GR+ E  +FL E+V  G VP   TY  +  AL  A   S  DD L+
Sbjct: 445 KSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRA---SRTDDALQ 489



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 16/250 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            ++ M  +G    V T SV  L+    +   V+EAL   + M    C P+V  +N +I+ 
Sbjct: 280 MIESMVDKGVTPDVITYSV--LVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDG 337

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+     +A  +   +++      PD  T+ ILI+  CK G              +A+ 
Sbjct: 338 LCKSDRSGEAFQI--ALQVYNRMLVPDKVTFNILIAGACKAG-----------NFEQASA 384

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF  M+ K   PDV+ +  LIDG CK  ++E A ++ D M   G  PN VTYN  +    
Sbjct: 385 LFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLC 444

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
               I++  E + +M + +  VP S +Y  +++ALC A R  +A   +++L   G  P  
Sbjct: 445 KSGRIEEPCEFLEEMVS-SGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDT 503

Query: 394 YTYKLVCDAL 403
            TY ++ D L
Sbjct: 504 VTYNILVDGL 513



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 128/297 (43%), Gaps = 55/297 (18%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G   + L  F  +M+R G    + T +   +I  L +   +   +  F  + +    PDV
Sbjct: 59  GETARALEIFRGEMARDGVAPTIVTYNT--IINGLCKSNELGAGMELFEELVKRGHHPDV 116

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             YN +I++LC+ G+  +AR L   M   G  C P+V TY++LI+  CK G         
Sbjct: 117 VTYNTLIDSLCKAGDLEEARRLHGGMSSRG--CVPNVVTYSVLINGLCKVG--------- 165

Query: 265 RRRIWEANHLFRLMLFKG--FVPDVVAYNCLIDGCCKTYRIERALELF------------ 310
             RI EA  L + M  K    +P+++ YN  +DG CK      A EL             
Sbjct: 166 --RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSP 223

Query: 311 -----------------------DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
                                  DDM   G +PN VTYN+ +      +++++A  M+  
Sbjct: 224 DTVTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIES 283

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           M  ++ GV P   +Y+ ++ A C+A RV EA + L  +   G  P   T+  + D L
Sbjct: 284 M--VDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGL 338



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 15/203 (7%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V  YN+V+ +LCR G   +A  +  + E+      P + TY  +I+  CK          
Sbjct: 45  VADYNIVLQSLCRAGETARALEIF-RGEMARDGVAPTIVTYNTIINGLCK---------- 93

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               +     LF  ++ +G  PDVV YN LID  CK   +E A  L   M+ +GC+PN V
Sbjct: 94  -SNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVV 152

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           TY+  I     V  ID+A E++++M   +  V P   +Y   +  LC+     EA + + 
Sbjct: 153 TYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMR 212

Query: 383 ELVDGG--SVPREYTYKLVCDAL 403
            L DG     P   T+  + D L
Sbjct: 213 SLRDGSLRVSPDTVTFSTLIDGL 235



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 83/214 (38%), Gaps = 61/214 (28%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G   +A A F  M     +PDV  +  +I+ LC+ G    AR +L+ M   G
Sbjct: 369 LIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLG 428

Query: 235 FRCPPDVYTYTILISSYCKYG------------MQTGCRK----------AIRR--RIWE 270
              PP+V TY +L+   CK G            + +GC            A+ R  R  +
Sbjct: 429 V--PPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDD 486

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN---------------- 314
           A  L   +   G+ PD V YN L+DG  K+ + E+A+ + ++M                 
Sbjct: 487 ALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFG 546

Query: 315 -------------------KKGCIPNRVTYNSFI 329
                               KG +P+  T +S +
Sbjct: 547 GLHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 580



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 17/144 (11%)

Query: 153 DFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +FL++M   G   E +T  S   L+  L      ++AL    ++K F   PD   YN+++
Sbjct: 454 EFLEEMVSSGCVPESMTYGS---LVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILV 510

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + L + G   +A  +LE+M   G +  PD +T+        + G   G  +         
Sbjct: 511 DGLWKSGKTEQAITVLEEMVGKGHQ--PDSFTFAACFGGLHRSGNLAGTME--------- 559

Query: 272 NHLFRLMLFKGFVPDVVAYNCLID 295
             L R++L KG +PD    + ++D
Sbjct: 560 --LLRVVLAKGMLPDATTCSSILD 581


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 111/217 (51%), Gaps = 14/217 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G +NE       M     +PDVY Y+V+IN LC+    + A  L ++M + G    P+  
Sbjct: 189 GDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLX--PNGV 246

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +  +PD++ YN LI G CK   
Sbjct: 247 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD 295

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG   +++TY + I       ++D A E  ++M   N  +    +YT
Sbjct: 296 LKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLD-DVAYT 354

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +I  LC+ GR ++A   L E++  G  P   TY ++
Sbjct: 355 ALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMI 391



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 24/201 (11%)

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G           
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLR--PSVVSYNTLMNGYIRLG----------- 189

Query: 267 RIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              + N  FRL   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG  PN V
Sbjct: 190 ---DLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGV 246

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A D +
Sbjct: 247 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSL---LPDLITYNTLIYGLCKKGDLKQAHDLI 303

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+   G    + TY  + D 
Sbjct: 304 DEMSMKGLKXDKITYTTLIDG 324



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 89/197 (45%), Gaps = 14/197 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 247 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 306

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G +   D  TYT LI   CK G      +  +R I E   L           D VAY
Sbjct: 307 SMKGLK--XDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRL-----------DDVAY 353

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  ++++ MQ 
Sbjct: 354 TALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQR 413

Query: 351 LNHGVPTSSSYTPIIHA 367
             H  P+  +Y  +++ 
Sbjct: 414 NGHA-PSVVTYNVLMNG 429



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 17/154 (11%)

Query: 144 RGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           +  ++K   D + +MS +G   + +T    T LI    +EG ++ A     RM Q   R 
Sbjct: 292 KKGDLKQAHDLIDEMSMKGLKXDKIT---YTTLIDGCCKEGDLDAAFEHRKRMIQENIRL 348

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D  AY  +I+ LC+ G    A  +L +M   G +  PD  TYT++I+ +CK G       
Sbjct: 349 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PDTXTYTMIINEFCKKG------- 399

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                +W+ + L + M   G  P VV YN L++G
Sbjct: 400 ----DVWKGSKLLKDMQRNGHAPSVVTYNVLMNG 429


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 150/367 (40%), Gaps = 67/367 (18%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG---NGELVTTSS 171
           A  F+  +     F H  +T   M        ++ G+   L+ M   G   N +L     
Sbjct: 56  ALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVI-- 113

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRP----------------------------- 202
              +I      GL  +AL TFYR+ +F C+P                             
Sbjct: 114 ---VINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMK 170

Query: 203 ------DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
                 +VY YN+++ ALC+    + AR LL +M   G  C PD  +YT ++SS C+ G 
Sbjct: 171 RDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKG--CIPDAVSYTTVVSSMCRLGK 228

Query: 257 QTGCRKAIRR-------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
               R+   R                   ++ E   LF  M  +G  PDV+ Y+ +I+  
Sbjct: 229 VEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTL 288

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-P 356
            +   +E AL +   M  +GC PN  T+ S ++ Y +   + +A+++  +M  +  G  P
Sbjct: 289 SEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRM--IQEGSEP 346

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            + +Y  +IH LC  G+++EA     ++   G  P E TY  + D    A +     +  
Sbjct: 347 NTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIW 406

Query: 417 RKRIRDG 423
            K I +G
Sbjct: 407 NKMITNG 413



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 125/282 (44%), Gaps = 41/282 (14%)

Query: 120 HWVERFFDFFHNEM-----------------TCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
           H +E  F+ F NEM                 T  EMG       NV+     L  M  RG
Sbjct: 257 HKMEEVFELF-NEMAVEGIDPDVITYSTVINTLSEMG-------NVEMALAVLAKMFLRG 308

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
               V T   T L+K     G + EAL  + RM Q    P+  AYN +I+ LC  G   +
Sbjct: 309 CSPNVHT--FTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVE 366

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  + ++ME  G    P+  TY+ LI  + K G   G           A+ ++  M+  G
Sbjct: 367 AVSVSQKMERNGVF--PNETTYSTLIDGFAKAGDLVG-----------ASEIWNKMITNG 413

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
            +P+VV Y C++D  C+      AL L ++M    C PN +T+N+FI+      + + A+
Sbjct: 414 CLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAM 473

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           +++ +M+      P  ++Y  ++  L  A R  EA   + E+
Sbjct: 474 KVLNQMRQYGCA-PNVTTYNEVLDGLFNAKRTREALQIVGEI 514



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 136/328 (41%), Gaps = 25/328 (7%)

Query: 78  LRQRILKK--EAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTC 135
           L  R++++  E   +A N L+ G  +Y         + +A      +ER    F NE T 
Sbjct: 335 LWNRMIQEGSEPNTVAYNTLIHGLCSYGK-------MVEAVSVSQKMERN-GVFPNETTY 386

Query: 136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM 195
             +   FA+  ++ G  +    M    NG L      TC++ VL    + N AL     M
Sbjct: 387 STLIDGFAKAGDLVGASEIWNKMIT--NGCLPNVVVYTCMVDVLCRNSMFNHALHLIENM 444

Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
               C P+   +N  I  LC  G    A  +L QM   G  C P+V TY  ++       
Sbjct: 445 ANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYG--CAPNVTTYNEVLD------ 496

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
              G   A R R  EA  +   +       ++V YN ++ G C     + AL++   +  
Sbjct: 497 ---GLFNAKRTR--EALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLV 551

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
            G  P+ +TYN+ I  Y    E+  AI+++ ++     G P   +YT ++  +C    V 
Sbjct: 552 GGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVD 611

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           EA   L ++++ G  P   T+  +   L
Sbjct: 612 EAVVHLDKMINEGICPNRATWNALVRGL 639


>gi|242082131|ref|XP_002445834.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
 gi|241942184|gb|EES15329.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
          Length = 426

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 17/251 (6%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           LW    DM  RG G  ++ ++ + +I   G   L ++A+  F R+ +F C      YN +
Sbjct: 130 LWSLASDM--RGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNAL 187

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           ++ALC  GNF  A  LL +M   G    PD  T++ L+ S+C  G           ++ E
Sbjct: 188 LDALCANGNFTGAYKLLRRMARKG--VAPDRATFSTLVDSWCAAG-----------KLNE 234

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A      M  +GF P V   + L+DG  +   +E A      M K+G +P+  T+NS   
Sbjct: 235 AQAFLDDMASRGFRPPVRGRDLLVDGLVRAGHLEEAKAFALRMTKEGILPDVATFNSLAE 294

Query: 331 YYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
                 ++D A+ ++    +  L   +  +S Y  II ALC+AGR  +A  F  ++   G
Sbjct: 295 ALCNAGDVDFAVALLADASSRGLCPDISHTSLYAAIIKALCKAGRFADAFAFFGDMKMKG 354

Query: 389 SVPREYTYKLV 399
             P    Y ++
Sbjct: 355 HPPNRPVYVML 365


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 132/267 (49%), Gaps = 19/267 (7%)

Query: 137 EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196
           E  I+  R N    L+D L  +SR    +L T +++   I+ + +EG+ + AL     + 
Sbjct: 209 EATILEGRINEALELFDEL--VSRGLRPDLYTYNAI---IRGICKEGMEDRALDFVRHLS 263

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
              C PDV +YN+++ +      +     L++ M L G  C P+V T++ILISS+C+ G 
Sbjct: 264 ARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSG--CEPNVVTHSILISSFCREG- 320

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                     R+ EA ++  +M  KG  PD  +Y+ LI   CK  R++ A+E  + M   
Sbjct: 321 ----------RVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSD 370

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           GC+P+ V YN+ +         D A+++  K+  +    PT  +Y  +  AL   G  ++
Sbjct: 371 GCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCP-PTVRAYNTMFSALWSCGNKIK 429

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A + ++E++  G  P E TY  +   L
Sbjct: 430 ALEMISEMIRKGIDPDEITYNSLISCL 456



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 119/253 (47%), Gaps = 14/253 (5%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   +I    +   ++ A   F RM+     PDV  YN++I +LC  G    A  +++++
Sbjct: 133 SYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDEL 192

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G  C P V TYTILI +    G           RI EA  LF  ++ +G  PD+  Y
Sbjct: 193 LKDG--CKPSVITYTILIEATILEG-----------RINEALELFDELVSRGLRPDLYTY 239

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N +I G CK    +RAL+    ++ +GC P+ V+YN  +R +   +  +    +M+ M  
Sbjct: 240 NAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMV- 298

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
           L+   P   +++ +I + C  GRV EA + L  + + G  P  Y+Y  +  A        
Sbjct: 299 LSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLD 358

Query: 411 LLDDGLRKRIRDG 423
           L  + L K + DG
Sbjct: 359 LAIEYLEKMVSDG 371



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 124/262 (47%), Gaps = 20/262 (7%)

Query: 149 KGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           K  W+     +KDM   G    V T S+  LI     EG V EA+     MK+    PD 
Sbjct: 284 KSRWEDGERLMKDMVLSGCEPNVVTHSI--LISSFCREGRVREAVNVLEVMKEKGLTPDS 341

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           Y+Y+ +I+A C+ G  + A   LE+M   G  C PD+  Y  ++++ CK+G    C    
Sbjct: 342 YSYDPLISAFCKEGRLDLAIEYLEKMVSDG--CLPDIVNYNTILATLCKFG----CADL- 394

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
                 A  +F  +   G  P V AYN +           +ALE+  +M +KG  P+ +T
Sbjct: 395 ------ALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEIT 448

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YNS I        +D+AI ++  M+      PT  S+  ++  +C+A RV E  + L  +
Sbjct: 449 YNSLISCLCRDGLVDEAIGLLVDMEATRFQ-PTVISFNIVLLGMCKAHRVFEGIELLITM 507

Query: 385 VDGGSVPREYTYKLVCDALNAA 406
           V+ G +P E +Y L+ + +  A
Sbjct: 508 VEKGCLPNETSYVLLIEGIAYA 529



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 39/281 (13%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G  NE+L     +     +PDV     +I       N  KA  ++E +E  G    PDVY
Sbjct: 76  GKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG---DPDVY 132

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           +Y  +IS + K             +I  AN +F  M  +GF PDVV YN +I   C   +
Sbjct: 133 SYNAMISGFSK-----------ANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGK 181

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           +E A E+ D++ K GC P+ +TY   I    +   I++A+E+  ++  ++ G+ P   +Y
Sbjct: 182 LELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDEL--VSRGLRPDLYTY 239

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY-----------------KLVCDALN 404
             II  +C+ G    A DF+  L   G  P   +Y                 +L+ D + 
Sbjct: 240 NAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVL 299

Query: 405 AAEEPSLLDDG--LRKRIRDGIEYRFRQVMKVKPIMKHKEL 443
           +  EP+++     +    R+G   R R+ + V  +MK K L
Sbjct: 300 SGCEPNVVTHSILISSFCREG---RVREAVNVLEVMKEKGL 337



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 26/169 (15%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++  L + G  + AL  F ++ +  C P V AYN + +AL   GN  KA  ++ +M   G
Sbjct: 382 ILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKG 441

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGC------RKAIR------------------RRIWE 270
               PD  TY  LIS  C+ G+           +A R                   R++E
Sbjct: 442 I--DPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFE 499

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
              L   M+ KG +P+  +Y  LI+G         A+EL + + + G I
Sbjct: 500 GIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAMELANSLYRLGVI 548


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 121/260 (46%), Gaps = 18/260 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R   +    +   +M RRG    V T     L+  + +   +N A A    M +    PD
Sbjct: 256 RSGKLASARNMFDEMLRRGVPPTVVT--FNTLMSGMCKASDLNSANALRGLMAKAGVAPD 313

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           VY Y   +  LC+ G    A  + E+M   G    P+   +T LI ++CK G        
Sbjct: 314 VYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVN--PNTVVFTTLIDAHCKEG-------- 363

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               +     L R M  +G   D+VAYN L +G C+   ++ A ++ ++M   G  P++V
Sbjct: 364 ---NVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKV 420

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLA 382
           TY + I  +    E+D A+EM ++M   + GV     +YT +I  L ++GR +++   L 
Sbjct: 421 TYTTLIDGFCKEGELDMAMEMKQEMS--DEGVALDEVTYTTLISGLSKSGRSVDSERILC 478

Query: 383 ELVDGGSVPREYTYKLVCDA 402
           E+++ G  P   TY +V DA
Sbjct: 479 EMMEAGLEPDNTTYTMVIDA 498



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 16/219 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EA A + ++      P+   +N+++  + R G    AR + ++M   G   PP V T+
Sbjct: 225 VPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGV--PPTVVTF 282

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L+S  CK              +  AN L  LM   G  PDV  Y   + G CK  RI+
Sbjct: 283 NTLMSGMCKAS-----------DLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQ 331

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTP 363
            A+E+F++M ++G  PN V + + I  +     +   +E+ R+M     G+ T   +Y  
Sbjct: 332 DAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMA--TRGIKTDLVAYNA 389

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + + LC    +  A D + E+ + G  P + TY  + D 
Sbjct: 390 LANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDG 428



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 101/230 (43%), Gaps = 14/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L++ +   G +  A   F  M +    P V  +N +++ +C+  + N A  L   M   G
Sbjct: 250 LMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAG 309

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDVYTY   +   CK G           RI +A  +F  M  +G  P+ V +  LI
Sbjct: 310 VA--PDVYTYGAFMQGLCKAG-----------RIQDAVEMFEEMRERGVNPNTVVFTTLI 356

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK   +   LEL  +M  +G   + V YN+       V ++  A +++ +M+N N  
Sbjct: 357 DAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRN-NGL 415

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
            P   +YT +I   C+ G +  A +   E+ D G    E TY  +   L+
Sbjct: 416 KPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLS 465



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 111/264 (42%), Gaps = 35/264 (13%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +   ++   +  ++M  RG      T   T LI    +EG V   L     M     + D
Sbjct: 326 KAGRIQDAVEMFEEMRERGVNP--NTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTD 383

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-------- 255
           + AYN + N LCRV +   A  ++E+M   G +  PD  TYT LI  +CK G        
Sbjct: 384 LVAYNALANGLCRVRDLKAANDIVEEMRNNGLK--PDKVTYTTLIDGFCKEGELDMAMEM 441

Query: 256 ------------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                             + +G  K+ R    ++  +   M+  G  PD   Y  +ID  
Sbjct: 442 KQEMSDEGVALDEVTYTTLISGLSKSGRS--VDSERILCEMMEAGLEPDNTTYTMVIDAF 499

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-P 356
           CK   ++   +L  +M  KG  P  VTYN  +  + ++ ++  A  ++  M  LN GV P
Sbjct: 500 CKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAM--LNIGVCP 557

Query: 357 TSSSYTPIIHALCEAGRVLEARDF 380
              +Y  ++   C+ G+V +A + 
Sbjct: 558 DDITYNILLDGHCKHGKVRDAEEL 581



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 18/186 (9%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           +G  D   +M +  + E V    VT   LI  L + G   ++      M +    PD   
Sbjct: 432 EGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTT 491

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           Y +VI+A C+  +      LL++M+  G +  P V TY ++++ +C  G           
Sbjct: 492 YTMVIDAFCKNSDVKTGFKLLKEMQNKGRK--PGVVTYNVVMNGFCILG----------- 538

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++  A+ L   ML  G  PD + YN L+DG CK  ++  A EL    + KG + +   Y 
Sbjct: 539 QMKNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKVRDAEEL---KSAKGMVSDFGLYT 595

Query: 327 SFIRYY 332
           S I  +
Sbjct: 596 SLINEF 601


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 122/254 (48%), Gaps = 18/254 (7%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           NV+  +     M  RG    + T   T LIK     G + EAL  +  M Q  C P+V A
Sbjct: 294 NVELAFALFAQMFLRGCDANIHT--FTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVA 351

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN +I+ LC  G+  +A  + +QM+  G  C P+V TY+ILI  + K G   G  +   R
Sbjct: 352 YNTLIHGLCSNGSLEEALQVCDQMQRSG--CLPNVTTYSILIDGFAKSGDLVGASETWNR 409

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
                      M+  G  P+VV Y C++D  CK    ++A  L + M  +GC PN +T+N
Sbjct: 410 -----------MISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFN 458

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           +FI+       ++ A++++ +MQ   HG +P  ++Y  ++ AL    +  EA     E+ 
Sbjct: 459 TFIKGLCGNGRVEWAMKLLERMQ--GHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIE 516

Query: 386 DGGSVPREYTYKLV 399
                P   TY  V
Sbjct: 517 ARNLQPNLVTYNTV 530



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 16/223 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  + +EG +  A+     M      P+V +Y+ +IN+LC  GN   A  L  QM L G
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  +++T+T LI          GC   +R +++EA  L++LM+  G  P+VVAYN LI
Sbjct: 310 --CDANIHTFTPLIK---------GC--FMRGKLYEALDLWKLMIQDGCEPNVVAYNTLI 356

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C    +E AL++ D M + GC+PN  TY+  I  ++   ++  A E   +M  ++HG
Sbjct: 357 HGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRM--ISHG 414

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             P   +YT ++  LC+     +A   + ++   G  P   T+
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITF 457



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 129/289 (44%), Gaps = 32/289 (11%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M R G    VTT S+  LI    + G +  A  T+ RM    CRP+V  Y  +++ LC+ 
Sbjct: 375 MQRSGCLPNVTTYSI--LIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKN 432

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-----------MQT-GCRKAIR 265
             F++A  L+E+M L G  C P+  T+   I   C  G           MQ  GC   I 
Sbjct: 433 SMFDQANSLVEKMTLEG--CTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNIT 490

Query: 266 ------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        +  EA  LF+ +  +   P++V YN ++ G  +   +  AL+LF   
Sbjct: 491 TYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKA 550

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
             +G  P+ +TYN+ I  Y    ++  A +++ ++ ++    P   +YT +I   C    
Sbjct: 551 LVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMN 610

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVC----DALNAAEEPSLLDDGLRK 418
           + EA  FL + ++ G  P   T+  +     D+L       +LDD LRK
Sbjct: 611 IEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDILRK 659



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 111/275 (40%), Gaps = 56/275 (20%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRP------------------------------- 202
           C+I      G   +AL  FYR+ +F C+P                               
Sbjct: 114 CIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKD 173

Query: 203 ----DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
               +V+ YN+++ ALC+    + A  L  +M   G  CPPD  TYT ++SS CK G   
Sbjct: 174 GLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKG--CPPDAVTYTTMVSSLCKAGKID 231

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
             R+   R                F P V  YN LIDG CK  RIE A++L  +M   G 
Sbjct: 232 DARELAGR----------------FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV 275

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            PN V+Y+  I    V   ++ A  +  +M  L        ++TP+I      G++ EA 
Sbjct: 276 DPNVVSYSCIINSLCVSGNVELAFALFAQMF-LRGCDANIHTFTPLIKGCFMRGKLYEAL 334

Query: 379 DFLAELVDGGSVPREYTYKLVCDAL--NAAEEPSL 411
           D    ++  G  P    Y  +   L  N + E +L
Sbjct: 335 DLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEAL 369



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 105/230 (45%), Gaps = 21/230 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+K L +   V+ A   F  M    C PD   Y  ++++LC+ G  + AR      EL G
Sbjct: 185 LLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAR------ELAG 238

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R  P V  Y  LI   CK G           RI  A  L   M+  G  P+VV+Y+C+I
Sbjct: 239 -RFKPSVPVYNALIDGMCKEG-----------RIEVAIKLLGEMMDNGVDPNVVSYSCII 286

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +  C +  +E A  LF  M  +GC  N  T+   I+   +  ++ +A+++ + M  +  G
Sbjct: 287 NSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLM--IQDG 344

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P   +Y  +IH LC  G + EA     ++   G +P   TY ++ D  
Sbjct: 345 CEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGF 394



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 32/222 (14%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM--------- 256
            Y V+I  L R    +  +++L+QM++ G  C  D++    +I+ Y + G          
Sbjct: 76  TYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFI--CIINGYKRVGSAEQALKMFY 133

Query: 257 ---QTGCRKAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
              + GC+  +R             +    N L+  M   G +P+V  YN L+   CK  
Sbjct: 134 RIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKND 193

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
           R++ A +LF +M+ KGC P+ VTY + +       +ID A E+  + +      P+   Y
Sbjct: 194 RVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK------PSVPVY 247

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +I  +C+ GR+  A   L E++D G  P   +Y  + ++L
Sbjct: 248 NALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSL 289


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 126/265 (47%), Gaps = 20/265 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L++M  RG   L    +   +I+ + +EG+V  A      +    C PDV +YN+++ A
Sbjct: 239 LLEEMLARG--LLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRA 296

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
               G +++   L+ +M   G  C P+  TY+ILISS C++G           RI EA  
Sbjct: 297 FLNQGKWDEGEKLVAEMFSRG--CEPNKVTYSILISSLCRFG-----------RIDEAIS 343

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           + ++M+ K   PD  +Y+ LI   CK  R++ A+ + D M   GC+P+ V YN+ +    
Sbjct: 344 VLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALC 403

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
                ++A+E+  K++ +    P  SSY  +I AL   G    A   +  ++  G  P E
Sbjct: 404 KNGNANQALEIFNKLRGMGCP-PNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDE 462

Query: 394 YTYKLVCDALN----AAEEPSLLDD 414
            TY  +   L       E   LLDD
Sbjct: 463 ITYNSLISCLCRDGLVEEAIGLLDD 487



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 29/228 (12%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC---KYGMQ 257
            PDV+AYN VI+  C+V     A  +L +M+  GF   PD+ TY I+I S C   K G+ 
Sbjct: 144 EPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFL--PDIVTYNIMIGSLCNRRKLGLA 201

Query: 258 ---------TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                      C   +               I EA  L   ML +G +PD+  YN +I G
Sbjct: 202 LTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRG 261

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV- 355
            CK   +ERA EL   +  KGC P+ ++YN  +R +    + D+  +++ +M   + G  
Sbjct: 262 MCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEM--FSRGCE 319

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           P   +Y+ +I +LC  GR+ EA   L  +++    P  Y+Y  +  AL
Sbjct: 320 PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISAL 367



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 20/262 (7%)

Query: 149 KGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           +G WD     + +M  RG      T S+  LI  L   G ++EA++    M +    PD 
Sbjct: 300 QGKWDEGEKLVAEMFSRGCEPNKVTYSI--LISSLCRFGRIDEAISVLKVMIEKELTPDT 357

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           Y+Y+ +I+ALC+ G  + A  +++ M   G  C PD+  Y  ++++ CK G         
Sbjct: 358 YSYDPLISALCKEGRLDLAIGIMDYMISNG--CLPDIVNYNTILAALCKNGNAN------ 409

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
                +A  +F  +   G  P+V +YN +I          RAL +   M  KG  P+ +T
Sbjct: 410 -----QALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEIT 464

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YNS I        +++AI ++  M+      PT  SY  ++  LC+  R+ +A    AE+
Sbjct: 465 YNSLISCLCRDGLVEEAIGLLDDMEQSGFR-PTVISYNIVLLGLCKVRRIDDAIGMFAEM 523

Query: 385 VDGGSVPREYTYKLVCDALNAA 406
           ++ G  P E TY L+ + +  A
Sbjct: 524 IEKGCRPNETTYILLIEGIGFA 545



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 102/217 (47%), Gaps = 16/217 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T S   LI  L +EG ++ A+     M    C PD+  YN ++ ALC+ GN N+A  +  
Sbjct: 357 TYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFN 416

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           ++   G  CPP+V +Y  +IS+    G ++            A  +   M+ KG  PD +
Sbjct: 417 KLR--GMGCPPNVSSYNTMISALWSCGDRS-----------RALGMVPAMISKGIDPDEI 463

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN LI   C+   +E A+ L DDM + G  P  ++YN  +     V  ID AI M  +M
Sbjct: 464 TYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEM 523

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
             +  G  P  ++Y  +I  +  AG   EA +    L
Sbjct: 524 --IEKGCRPNETTYILLIEGIGFAGWRTEAMELANSL 558



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 20/235 (8%)

Query: 173 TCLIKVLG---EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           T L+K+L    + G  NE+L     +      PDV     +I       N  KA  ++E 
Sbjct: 79  THLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEI 138

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           +E       PDV+ Y  +IS +CK             +I  A  +   M  +GF+PD+V 
Sbjct: 139 LE---SHTEPDVFAYNAVISGFCKV-----------NQIEAATQVLNRMKARGFLPDIVT 184

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN +I   C   ++  AL + D +    C+P  +TY   I    V   I++A++++ +M 
Sbjct: 185 YNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEM- 243

Query: 350 NLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            L  G +P   +Y  II  +C+ G V  A + +  L   G  P   +Y ++  A 
Sbjct: 244 -LARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAF 297



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 69/159 (43%), Gaps = 13/159 (8%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           RG G     SS   +I  L   G  + AL     M      PD   YN +I+ LCR G  
Sbjct: 419 RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLV 478

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            +A  LL+ ME  GFR  P V +Y I++   CK            RRI +A  +F  M+ 
Sbjct: 479 EEAIGLLDDMEQSGFR--PTVISYNIVLLGLCKV-----------RRIDDAIGMFAEMIE 525

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           KG  P+   Y  LI+G         A+EL + +  +  I
Sbjct: 526 KGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVI 564


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 131/294 (44%), Gaps = 59/294 (20%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           + +DM +RG    +T ++   L+  L  +   ++A A    M++    PDV+ YN++IN 
Sbjct: 241 YREDMVQRGIA--MTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILING 298

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+ GN  KA  + E+M   G R      TYT LI  + + G           ++ E + 
Sbjct: 299 YCKEGNEKKALEVFEEMSQKGVRA--TAVTYTSLIYVFSRKG-----------QVQETDR 345

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE------------------------- 308
           LF + + KG  PDVV YN LI+  C    +ERA E                         
Sbjct: 346 LFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFC 405

Query: 309 ----------LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI----EMMRKMQNLNHG 354
                     L D+M K+G  P+ V+YN+ I  YS+  +I  A+    EMM K  N    
Sbjct: 406 LLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFN---- 461

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            PT  +Y  +I  LC+  +  +A + + E+V  G  P + TY  + + L   +E
Sbjct: 462 -PTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLTTEDE 514



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 25/216 (11%)

Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
           A  YR++   C      +N+++  LC  G   +A  LL QM  P      +  TY  +I+
Sbjct: 105 ADIYRLRLPLC---TTTFNIMLRHLCATGKPVRALELLRQMPRP------NAVTYNTVIA 155

Query: 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIERALE 308
            +C  G           R+  A  + R M  +G   PD   Y  LI G CK  R+E A++
Sbjct: 156 GFCARG-----------RVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVK 204

Query: 309 LFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIH 366
           +FD+M  KG + P+ V YN+ I  Y  V ++D A++    M  +  G+  T ++Y  ++H
Sbjct: 205 VFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDM--VQRGIAMTVATYNLLMH 262

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           AL    R  +A   L E+   G  P  +TY ++ + 
Sbjct: 263 ALFMDARASDAYAVLEEMQKNGFSPDVFTYNILING 298



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 97/227 (42%), Gaps = 36/227 (15%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE       GN  K L  F ++MS++G     T  + T LI V   +G V E    F  
Sbjct: 300 CKE-------GNEKKALEVF-EEMSQKG--VRATAVTYTSLIYVFSRKGQVQETDRLFNV 349

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
             +   RPDV  YN +IN+ C  G+  +A  ++ +ME    R PPD  TY  L+  +C  
Sbjct: 350 AVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKK--RIPPDDMTYNTLMRGFCLL 407

Query: 255 GMQTGCRKAI------------------------RRRIWEANHLFRLMLFKGFVPDVVAY 290
           G     R  I                        +  I +A  +   M+ KGF P ++ Y
Sbjct: 408 GRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTY 467

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           N LI G CK  + + A  L  +M  KG  P+  TY S I   +  +E
Sbjct: 468 NALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLTTEDE 514



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 16/170 (9%)

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R P    T+ I++   C  G      K +R     A  L R M      P+ V YN +I
Sbjct: 110 LRLPLCTTTFNIMLRHLCATG------KPVR-----ALELLRQMPR----PNAVTYNTVI 154

Query: 295 DGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
            G C   R++ ALE+  +M ++G I P++ TY + I  +  +  ++ A+++  +M     
Sbjct: 155 AGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGE 214

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P++  Y  +I   C+ G++  A  +  ++V  G      TY L+  AL
Sbjct: 215 VAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHAL 264


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 121/258 (46%), Gaps = 30/258 (11%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           GNG +  TS+ + +I  L     V  A   F  MK     PDVY Y ++I+   + G   
Sbjct: 482 GNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIK 541

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A   L++M   G  C P V TYT LI +Y K            +++  AN LF LM+ K
Sbjct: 542 QAHNWLDEMVRDG--CEPTVVTYTTLIHAYLK-----------AKKVSVANELFELMIAK 588

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI----------------PNRVTY 325
           G  P+V+ Y  LIDG CK+  IE+A +++  M     I                PN VTY
Sbjct: 589 GCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTY 648

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            + +      +++  A +++  M  ++   P +  Y  +I   C+A ++ EA++   ++V
Sbjct: 649 GALVDGLCKAHKVKDARDLLETM-FVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMV 707

Query: 386 DGGSVPREYTYKLVCDAL 403
           + G  P  YTY  + D L
Sbjct: 708 EHGYNPNVYTYSSLIDRL 725



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 12/283 (4%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
           F  +  T  E+       + V+  +   K+M  +G G +    + T LI    + G++ +
Sbjct: 485 FVPDTSTYSEVIGFLCNASRVENAFFLFKEM--KGTGVVPDVYTYTILIDCFSKAGIIKQ 542

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A      M +  C P V  Y  +I+A  +    + A  L E M   G  C P+V TYT L
Sbjct: 543 AHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKG--CFPNVITYTAL 600

Query: 248 ISSYCKYG-MQTGCRKAIRRR----IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           I  YCK G ++  C+   R R    I + +  F++       P+VV Y  L+DG CK ++
Sbjct: 601 IDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHK 660

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           ++ A +L + M   GC PN + Y++ I  +    ++D+A E+  KM  + HG  P   +Y
Sbjct: 661 VKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKM--VEHGYNPNVYTY 718

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           + +I  L +  R+      L+++++    P    Y  + D L+
Sbjct: 719 SSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLS 761



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 115/275 (41%), Gaps = 28/275 (10%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G ++   +V    + L   G   +A    + M      PD   Y+ VI  LC       A
Sbjct: 449 GTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENA 508

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
            FL ++M+  G    PDVYTYTILI  + K G+           I +A++    M+  G 
Sbjct: 509 FFLFKEMKGTGV--VPDVYTYTILIDCFSKAGI-----------IKQAHNWLDEMVRDGC 555

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA-- 341
            P VV Y  LI    K  ++  A ELF+ M  KGC PN +TY + I  Y     I+KA  
Sbjct: 556 EPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQ 615

Query: 342 -------------IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
                        ++M  K++N     P   +Y  ++  LC+A +V +ARD L  +   G
Sbjct: 616 IYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDG 675

Query: 389 SVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
             P    Y  + D    A +     +   K +  G
Sbjct: 676 CEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHG 710



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 29/226 (12%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG---- 255
           C P+   Y+ +I+  C+    ++A+ +  +M   G+   P+VYTY+ LI    K      
Sbjct: 676 CEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYN--PNVYTYSSLIDRLFKDKRLDL 733

Query: 256 --------MQTGCRKAI---------RRRIWEANHLFRLMLF---KGFVPDVVAYNCLID 295
                   ++  C   I           ++ + +  ++LML    KG  P+VV Y  +ID
Sbjct: 734 VLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMID 793

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G  K  ++++ LELF +M  KGC PN VTY   I +      +D+A  ++ +M+   +  
Sbjct: 794 GFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQ-TYWP 852

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
              SSY  +I         + +   L E+   GS P    YK++ D
Sbjct: 853 KHVSSYCKVIEGY--KREFILSLGLLEEVEKNGSAPIILLYKVLID 896



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 146/410 (35%), Gaps = 108/410 (26%)

Query: 116 TEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCL 175
            +F+ W  R   + H       +  VF RG+  +   +FL+++  RG+ + V    +  L
Sbjct: 155 VKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVPEEFLREI--RGDDKEVLGKLLNVL 212

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN----------------------- 212
           I+     GL N AL    R+K F  +P    YN ++                        
Sbjct: 213 IRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGL 272

Query: 213 ------------ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM---- 256
                       ALC+VG + +A  L+E+ +       P+   Y  +IS  C+       
Sbjct: 273 SMDEFTLGFFAQALCKVGKWREALSLIEKEDFV-----PNTILYNKMISGLCEASFFEEA 327

Query: 257 --------QTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                    T C   +            ++++     +  +M+ +G  P    +N L+  
Sbjct: 328 MDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHA 387

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYN------------------------------ 326
            CK+     A +L   M K  C P  V YN                              
Sbjct: 388 YCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLS 447

Query: 327 -----------SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
                      SF R      + +KA +++ +M   N  VP +S+Y+ +I  LC A RV 
Sbjct: 448 AGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMG-NGFVPDTSTYSEVIGFLCNASRVE 506

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
            A     E+   G VP  YTY ++ D  + A       + L + +RDG E
Sbjct: 507 NAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCE 556



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 95/233 (40%), Gaps = 33/233 (14%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C P    +N +++A C+  +F+ A  LL++ME     C P    Y ILI S C  G   G
Sbjct: 374 CYPSYTIFNSLVHAYCKSDDFSYAYKLLKKME--KCECKPGYVVYNILIGSICSGGELPG 431

Query: 260 ------CRKAIRR------------------------RIWEANHLFRLMLFKGFVPDVVA 289
                   KA                           +  +A  +   M+  GFVPD   
Sbjct: 432 PVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTST 491

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y+ +I   C   R+E A  LF +M   G +P+  TY   I  +S    I +A   + +M 
Sbjct: 492 YSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMV 551

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             +   PT  +YT +IHA  +A +V  A +    ++  G  P   TY  + D 
Sbjct: 552 R-DGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDG 603



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 20/210 (9%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T +I   G+ G V++ L  F  M    C P+   Y V+IN  C  G+ ++A  LLE+M
Sbjct: 787 TYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEM 846

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +   +  P  V +Y  +I  Y             +R    +  L   +   G  P ++ Y
Sbjct: 847 KQTYW--PKHVSSYCKVIEGY-------------KREFILSLGLLEEVEKNGSAPIILLY 891

Query: 291 NCLIDGCCKTYRIERALELFDDM--NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
             LID   K  R+E ALEL  ++          +  Y S I  +S  ++I  A E+   M
Sbjct: 892 KVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDM 951

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
             +  GV P   ++  ++  L    R  EA
Sbjct: 952 --IRDGVIPDLGTFVHLLMGLIRVRRWEEA 979


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 18/240 (7%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC----RPDVYAYNVVINALCRVGNFNKA 223
           T  S   ++ V+ +EG  + AL  +  +         +P+  ++N+VI ALCRVGN ++A
Sbjct: 135 TVKSFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQA 194

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             +   M      C  D YTY+ L+   C  G           RI EA  L   M  +G 
Sbjct: 195 VEVFRGMS--DRNCVADGYTYSTLMHGLCNEG-----------RIDEAVSLLDEMQVEGT 241

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+ VA+N LI   CK   + RA +L D+M  KGC+PN VTYNS +    +  ++DKA+ 
Sbjct: 242 FPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMS 301

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++ +M   N  VP   ++  ++    + GR L+    L  L + G    E++Y  +   L
Sbjct: 302 LLNRMV-ANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGL 360



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 142/336 (42%), Gaps = 67/336 (19%)

Query: 115 ATEFYHWV---ERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           A EFY+ V     F +   N ++   +     R  NV    +  + MS R    +    +
Sbjct: 155 ALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNC--VADGYT 212

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
            + L+  L  EG ++EA++    M+     P+  A+NV+I+ALC+ G+ ++A  L++ M 
Sbjct: 213 YSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMF 272

Query: 232 LPGF---------------------------------RCPPDVYTYTILISSYCKYGMQ- 257
           L G                                  +C P+  T+  L+  + K+G   
Sbjct: 273 LKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRAL 332

Query: 258 TGCRK--AIRRRIWEAN---------------------HLFRLMLFKGFVPDVVAYNCLI 294
            G R   ++  + +  N                      L++ M+ KG  P+ + Y+ LI
Sbjct: 333 DGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALI 392

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLN 352
           DG C+  + + A E   +M  KG  PN  TY+S +  Y    +I KAI + ++M   + N
Sbjct: 393 DGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCN 452

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           H       Y+ +I+ LC+ G++ EA     +++  G
Sbjct: 453 H---HEVCYSILINGLCKNGKLKEALIVWKQMLSRG 485



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 116/256 (45%), Gaps = 19/256 (7%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           L++   RGN       S + LI  L +EG     +  +  M +  C+P+   Y+ +I+ L
Sbjct: 341 LEEKGYRGN-----EFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGL 395

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           CR G  ++A+  L +M+  G    P+ +TY+ L+  Y + G      KAI   +W+    
Sbjct: 396 CREGKPDEAKEYLIEMKNKGHT--PNSFTYSSLMWGYFEAG---DIHKAI--LVWKE--- 445

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
              M         V Y+ LI+G CK  +++ AL ++  M  +G   + V Y+S I  +  
Sbjct: 446 ---MTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCN 502

Query: 335 VNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
              +++ +++  +M   N  + P   +Y  +++A C    V  A D L  ++D G  P  
Sbjct: 503 AQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDF 562

Query: 394 YTYKLVCDALNAAEEP 409
            T  +    L    +P
Sbjct: 563 ITCDIFLKTLRDNMDP 578



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 21/182 (11%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           ++L +M  +G+    T +S T    + G  E G +++A+  +  M    C      Y+++
Sbjct: 406 EYLIEMKNKGH----TPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSIL 461

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           IN LC+ G   +A  + +QM   G +   DV  Y+ +I  +C   +           + +
Sbjct: 462 INGLCKNGKLKEALIVWKQMLSRGIKL--DVVAYSSMIHGFCNAQL-----------VEQ 508

Query: 271 ANHLFRLMLFKG--FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
              LF  ML       PDVV YN L++  C    + RA+++ + M  +GC P+ +T + F
Sbjct: 509 GMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIF 568

Query: 329 IR 330
           ++
Sbjct: 569 LK 570



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 16/138 (11%)

Query: 184 LVNEALATFYRM--KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           LV + +  F +M     + +PDV  YN+++NA C   + ++A  +L  M   G  C PD 
Sbjct: 505 LVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQG--CDPDF 562

Query: 242 YTYTILISSYCKYGM---QTG--------CRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            T  I + +  +  M   Q G         R   R+R   A+++  +ML K  +P    +
Sbjct: 563 ITCDIFLKTL-RDNMDPPQDGREFLDELVVRLIKRQRTVGASNIIEVMLQKFLLPKPSTW 621

Query: 291 NCLIDGCCKTYRIERALE 308
              +   CK  ++ + + 
Sbjct: 622 ALAVQQLCKPMKVRKTIS 639


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M     +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 174 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGL--VPNGV 231

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 232 TFTTLIDGHCKSG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 280

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 281 LKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLD-DVAYT 339

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR L+A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 340 ALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRD 399

Query: 423 G 423
           G
Sbjct: 400 G 400



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ +   +   G R  P V ++  L++ Y + G        
Sbjct: 125 LYFFNILMHRFCKEGDIRVAQSVFNAITKWGLR--PSVVSFNTLMNGYIRLG-------- 174

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 175 ------DLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVP 228

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A 
Sbjct: 229 NGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAH 285

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 286 DLIDEMSMKGLKPDKITYTTLIDG 309



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 26/234 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG   TT     LI    + G V+ A+  + +
Sbjct: 206 CKE-----SKMDDANELFDEMLDKGLVPNGVTFTT-----LIDGHCKSGRVDLAMEIYKQ 255

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A  L+++M + G +  PD  TYT LI   CK 
Sbjct: 256 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK--PDKITYTTLIDGCCKE 313

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 314 GDLETAFEH--RKRMIQEN--IRL--------DDVAYTALISGLCQEGRYLDAEKVLREM 361

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
              G  P+  TY   I  +    ++    +++++MQ   H VP+  +Y  +++ 
Sbjct: 362 LSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGH-VPSVVTYNVLMNG 414


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 14/217 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G+++E       M     +PDVY Y+V+IN L +    + A  L ++M + G    P+  
Sbjct: 191 GVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGL--VPNGV 248

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +  +PD++ YN LI G CK   
Sbjct: 249 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD 297

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L DDM++KG  P+++TY + I       ++D A E  ++M   N  +     YT
Sbjct: 298 LKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD-DVVYT 356

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +I  LC+ GR ++A   L E++  G  P   TY ++
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMI 393



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 103/201 (51%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P   +Y  L++ Y + G+       
Sbjct: 142 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSAVSYNTLMNGYIRLGV------- 192

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   ML  G  PDV  Y+ LI+G  K  +++ A ELFD+M  KG +PN V
Sbjct: 193 ----LDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGV 248

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A D +
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSL---LPDLITYNTLIYGLCKKGDLKQAHDLI 305

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            ++   G  P + TY  + D 
Sbjct: 306 DDMSRKGLKPDKITYTTLIDG 326



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 14/197 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A  L++ M
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDM 308

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +  PD  TYT LI   CK G      +  +R I E   L           D V Y
Sbjct: 309 SRKGLK--PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL-----------DDVVY 355

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ 
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 415

Query: 351 LNHGVPTSSSYTPIIHA 367
             H VP+  +Y  +++ 
Sbjct: 416 DGH-VPSVVTYNVLMNG 431



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 15/153 (9%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  ++K   D + DMSR+G      T   T LI    +EG ++ A     RM Q   R D
Sbjct: 294 KKGDLKQAHDLIDDMSRKGLKPDKIT--YTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD 351

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              Y  +I+ LC+ G    A  +L +M   G    PD  TYT++I+ +CK G        
Sbjct: 352 DVVYTALISGLCQEGRSVDAEKMLREMLSVGLN--PDTGTYTMIINEFCKKG-------- 401

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
               +W+ + L + M   G VP VV YN L++G
Sbjct: 402 ---DVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 45/244 (18%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQ-----------------MELPGFRCPPDVYT 243
           R  +++Y  +I+ LC    F++A+ LL+                  +E  G +   D+Y 
Sbjct: 16  RHTLHSYCTMIHFLCTHQMFSEAKSLLQVVVSRKGKGSASAVFAAILETKGTQ-RSDIYV 74

Query: 244 YTILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GFVPDVV 288
           ++ LI++Y + G       C +  R  ++W           +L +L  FK   GF  +++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEIL 134

Query: 289 A---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
                     +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  +  +D
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLD 194

Query: 340 KAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           +   +   M  L  GV P   +Y+ +I+ L +  ++ +A +   E++  G VP   T+  
Sbjct: 195 EGFRLKSAM--LASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTT 252

Query: 399 VCDA 402
           + D 
Sbjct: 253 LIDG 256


>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
 gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
          Length = 482

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 133/267 (49%), Gaps = 19/267 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F + + V    + L ++  RG   +VT++   C+I  L ++G ++EA   F RM++   R
Sbjct: 181 FCKADRVPEAVELLNELVARGG--VVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVR 238

Query: 202 PDVYAYNVVINALCRVGNFNKAR-FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           P    + V+I+ LC+     +A+      +E  G    P V   + L+  +CKYG     
Sbjct: 239 PQEVTFTVLIDGLCKANRVARAKEIFFSYLESGG---SPSVVICSCLMDGFCKYG----- 290

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  + EA  +F LM  +G  P+ V+ N LI+G CK  R+ +A E+F+++ K+   P
Sbjct: 291 ------GVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKP 344

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD- 379
           + VTY++F+      + +D+A +++  + +   G P    YT +I  LC  GR+ EAR  
Sbjct: 345 DVVTYSTFMDGLCRAHRVDQARQVLCMLVD-KGGTPDVVMYTALISGLCSLGRLDEARKV 403

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAA 406
           F  ++   G  P  +T  ++ +    A
Sbjct: 404 FEVDMRAAGCAPNNFTCNVLVNGFGLA 430



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 17/220 (7%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           V   I  L +  ++++A + F  +K FR   +  +YN++INA C+    ++A  L  +M+
Sbjct: 69  VNITIDSLCKSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTKRIDEAIQLFGEMK 128

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
            PG  C P   TY  LI   C+             R+ EA   +  +L  G     + YN
Sbjct: 129 APG--CAPSTSTYNTLIGGLCRV-----------ERLGEAQQFYERLLSSGAGASFITYN 175

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L+DG CK  R+  A+EL +++  +G +     YN  I       +I +A     +M+  
Sbjct: 176 ILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRME-- 233

Query: 352 NHGV-PTSSSYTPIIHALCEAGRVLEARD-FLAELVDGGS 389
             GV P   ++T +I  LC+A RV  A++ F + L  GGS
Sbjct: 234 KDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGS 273



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 106/262 (40%), Gaps = 27/262 (10%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           LV T S   LI    +   ++EA+  F  MK   C P    YN +I  LCRV    +A+ 
Sbjct: 98  LVNTVSYNILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQ 157

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGM---------QTGCRKAI------------ 264
             E++   G        TY IL+  +CK            +   R  +            
Sbjct: 158 FYERLLSSG--AGASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDT 215

Query: 265 ---RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              + +I EA   F  M   G  P  V +  LIDG CK  R+ RA E+F    + G  P+
Sbjct: 216 LFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPS 275

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            V  +  +  +     +D+A  +   M N     P   S   +I+ LC+A R+ +AR+  
Sbjct: 276 VVICSCLMDGFCKYGGVDEAWRIFELMTN-RGCTPNDVSCNILINGLCKAKRLSQAREVF 334

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+V   + P   TY    D L
Sbjct: 335 EEVVKRQAKPDVVTYSTFMDGL 356



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 34/220 (15%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR---- 265
           ++  LC VG  ++A  L   +   G   P D     +L+    K G    C K ++    
Sbjct: 5   IVLCLCHVGKLDEALELFHSLVSDGCGLPAD-----LLVRELSKAGRAEECLKVVKLMLD 59

Query: 266 RRIWEANHLFRLML---------------------FKGFVPDVVAYNCLIDGCCKTYRIE 304
           R+     HL  + +                     F+G V + V+YN LI+  CKT RI+
Sbjct: 60  RQQLRERHLVNITIDSLCKSDMIDKAESWFQELKDFRGLV-NTVSYNILINAFCKTKRID 118

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTP 363
            A++LF +M   GC P+  TYN+ I     V  + +A +   ++  L+ G   S  +Y  
Sbjct: 119 EAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERL--LSSGAGASFITYNI 176

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++   C+A RV EA + L ELV  G V     Y  + D L
Sbjct: 177 LVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDTL 216



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 93/233 (39%), Gaps = 43/233 (18%)

Query: 105 PQKVTL-----GLNKATEFYHWVERFFDFFHNE-----MTCKEMGIVFARGNNVKGLWDF 154
           PQ+VT      GL KA       E FF +  +      + C  +   F +   V   W  
Sbjct: 239 PQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEAWRI 298

Query: 155 LKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            + M+ RG     T + V+C  LI  L +   +++A   F  + + + +PDV  Y+  ++
Sbjct: 299 FELMTNRG----CTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMD 354

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK---------- 262
            LCR    ++AR +L  +   G    PDV  YT LIS  C  G     RK          
Sbjct: 355 GLCRAHRVDQARQVLCMLVDKGG--TPDVVMYTALISGLCSLGRLDEARKVFEVDMRAAG 412

Query: 263 ---------------AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
                           +  R+ EA  LF+  + +G  PD   ++ + +   KT
Sbjct: 413 CAPNNFTCNVLVNGFGLAGRLDEARELFQRFVERGVQPDCRTFSAMANNTAKT 465


>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
 gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 139/289 (48%), Gaps = 18/289 (6%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A  F+ W  +  ++ H+      M    A+    + +WD +  M    N E++   +   
Sbjct: 39  AYRFFEWASKQRNYVHSVRAYHSMIESLAKIRQYQMVWDLVNAMR---NKEILNVEAFCI 95

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++       V EA+ TF  M+++  +P+V A+N +++ALC+  N  KA+ + + M+   
Sbjct: 96  IMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNMK--- 152

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PD  TY+ILI  + +              + +A  ++R M+  G +PD V Y+ ++
Sbjct: 153 DQFVPDSKTYSILIEGWGRAP-----------NLPKAREIYREMIDSGCIPDEVTYSIMV 201

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK  R++ A+E+  +M+   C P+   Y+  +  Y V N I+ A+    +M+  N  
Sbjct: 202 DVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEMER-NGV 260

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +   ++Y  +I A C+A ++      L ++   G  P   T  ++ ++L
Sbjct: 261 MADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSL 309



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 43/185 (23%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + L+   G E  + +A++TF  M++     DV AYN +I+A C+         +L+ M+L
Sbjct: 233 SVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDL 292

Query: 233 PG---------------------------FR-----CPPDVYTYTILISSYCKYGMQTGC 260
            G                           FR     C PDV +YT++I  +C        
Sbjct: 293 KGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIKVCEPDVDSYTMIIKMFCG------- 345

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
               R+ +  A  +++ M  K FVP +  ++ LI+G C+     +A  L ++M +KG  P
Sbjct: 346 ----RKELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRP 401

Query: 321 NRVTY 325
           +  T+
Sbjct: 402 SGATF 406


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 15/248 (6%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           T K + + + R  NV     ++ +M  RG   +V  +++T +I    E+ LVN A+  F+
Sbjct: 246 TYKYIIVGYCRNGNVLEADRWICEMMERGF--VVDNATLTLIITAFCEKSLVNRAVWFFH 303

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           ++ +    P++  Y+ +I+ LC+ G+  +A  LLE+M   G++  P+VYT+T LI   CK
Sbjct: 304 KVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWK--PNVYTHTSLIHGLCK 361

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G      +A R          +L+    + P+V  Y  +I G CK  ++ RA  LF+ M
Sbjct: 362 KGWT---ERAFRL-------FLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERM 411

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            ++G +PN  TY + I  +       KA E+M  M N     P + +Y  I+  LC+ GR
Sbjct: 412 KEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGF-FPNTCTYNSIVDGLCKRGR 470

Query: 374 VLEARDFL 381
             EA   L
Sbjct: 471 AEEAFKLL 478



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 119/263 (45%), Gaps = 17/263 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           VFA    +K   D + DM  R  G ++TT  +  +I V  E  LV  A   F  M     
Sbjct: 183 VFAEIGKLKEAVDMILDM--RNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGV 240

Query: 201 RPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
            PD   Y  +I   CR GN  +A R++ E ME  GF    D  T T++I+++C+      
Sbjct: 241 YPDSCTYKYIIVGYCRNGNVLEADRWICEMME-RGF--VVDNATLTLIITAFCE------ 291

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
            +  + R +W     F  +   G  P+++ Y+ +I G CK   +++A EL ++M K G  
Sbjct: 292 -KSLVNRAVW----FFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWK 346

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN  T+ S I         ++A  +  K+   ++  P   +YT +I   C+  ++  A  
Sbjct: 347 PNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEM 406

Query: 380 FLAELVDGGSVPREYTYKLVCDA 402
               + + G VP   TY  + D 
Sbjct: 407 LFERMKEQGLVPNTNTYTTLIDG 429



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 125/305 (40%), Gaps = 33/305 (10%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  N    ++ ++ MS  G      T +   ++  L + G   EA        Q +   D
Sbjct: 432 KAGNFSKAYELMELMSNEGF--FPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEAD 489

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              Y ++I+  C+  + N+A   L +M   GF+  PD++ YT LI+++C+  M     K 
Sbjct: 490 GVTYTILISEQCKRADMNQALVFLNKMFKVGFQ--PDIHLYTTLIAAFCRQNMMKDSEKL 547

Query: 264 I------------------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
                                     +++  A   F+ M   G  PD ++Y  LI G CK
Sbjct: 548 FDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCK 607

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
             R++ A +L+D M  KG  P  VT  +    Y    +   A+ ++ +   LN  +   +
Sbjct: 608 ESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILER---LNKKLWIRT 664

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
            +T +I  LC   +V  A  F  +L+D        T      A   + + +L+ D L +R
Sbjct: 665 VHT-LIRKLCCEKKVALAALFFHKLLDKEVNVDRVTLAAFNTACIESNKYALVSD-LSER 722

Query: 420 IRDGI 424
           I  GI
Sbjct: 723 ISKGI 727


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 120/252 (47%), Gaps = 7/252 (2%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +I  L +  LV+EA   F  M       DV  YN +I   C VG   +A  LL  M L
Sbjct: 202 STIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVL 261

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
                 PDVYTYTIL+ + CK G      K  +RRI     L   M  +G   DV+ Y+ 
Sbjct: 262 KTIN--PDVYTYTILVDALCKEGKV----KEAKRRISYVWDLIDEMRDRGQPADVITYSS 315

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LIDG CK   ++RA+ LF+ M  +G  PN  T+   +        +  A E+ + +    
Sbjct: 316 LIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKG 375

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
           + +   + Y  +I+  C+ G + EA   L+++ D G +P  +T++ +  AL   +E    
Sbjct: 376 YHLNVYT-YNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKA 434

Query: 413 DDGLRKRIRDGI 424
           +  LR+ I  G+
Sbjct: 435 EKLLRQMIARGL 446



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 113/274 (41%), Gaps = 72/274 (26%)

Query: 186 NEALATFYRMKQFRC------------RPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           N+ L +F +MK +              +PD++  N++IN  C +G       +L ++   
Sbjct: 63  NKILDSFAKMKHYSTVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKR 122

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV--------- 284
           G+  PP   T   LI   C           ++ ++ +A H    +L +GF          
Sbjct: 123 GY--PPSTVTLNTLIKGLC-----------LKGQVKKALHFHDKLLAQGFQLNQVGYGTL 169

Query: 285 --------------------------PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                                     PDVV Y+ +ID  CK   +  A  LF +M  KG 
Sbjct: 170 INGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGI 229

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLE 376
             + VTYN+ I  + +V ++ +AI ++  M  + +N   P   +YT ++ ALC+ G+V E
Sbjct: 230 SADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTIN---PDVYTYTILVDALCKEGKVKE 286

Query: 377 AR-------DFLAELVDGGSVPREYTYKLVCDAL 403
           A+       D + E+ D G      TY  + D L
Sbjct: 287 AKRRISYVWDLIDEMRDRGQPADVITYSSLIDGL 320



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 15/212 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++A++ F RM   R  P +  +N ++++  ++ +++    L  ++EL G +  PD++T 
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTVS-LSHRLELKGIQ--PDLFTL 96

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI+ +C  G  T     + +           +L +G+ P  V  N LI G C   +++
Sbjct: 97  NILINCFCHMGQITFGFSVLAK-----------ILKRGYPPSTVTLNTLIKGLCLKGQVK 145

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +AL   D +  +G   N+V Y + I     + +   AI++++K+       P    Y+ I
Sbjct: 146 KALHFHDKLLAQGFQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDG-RLTKPDVVMYSTI 204

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           I ALC+   V EA    +E+   G      TY
Sbjct: 205 IDALCKYQLVSEAYGLFSEMTVKGISADVVTY 236



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 53/215 (24%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           CKE G V      +  +WD + +M  RG   +++T SS   LI  L + G ++ A+A F 
Sbjct: 279 CKE-GKVKEAKRRISYVWDLIDEMRDRGQPADVITYSS---LIDGLCKNGHLDRAIALFN 334

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +MK    RP+++ + ++++ L + G    A+ + + +   G+    +VYTY ++I+ +CK
Sbjct: 335 KMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHL--NVYTYNVMINGHCK 392

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G+                                              +E AL +   M
Sbjct: 393 QGL----------------------------------------------LEEALTMLSKM 406

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
              GCIPN  T+ + I      +E DKA +++R+M
Sbjct: 407 EDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQM 441


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 130/267 (48%), Gaps = 21/267 (7%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMK 196
           +G++   G+  + L  F ++M R G   +V  + + T LI      G +++AL     M 
Sbjct: 404 IGVLARNGHLYQALMHF-REMERSG---IVPDNVIYTILIDGFCRNGALSDALKMRDEML 459

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
              C  DV  YN  +N LC+   F  A  L  +M   G    PD YT+T LI  YCK G 
Sbjct: 460 ARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGM--VPDFYTFTTLIRGYCKDG- 516

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                      + +A +LF  M+     PD V YN LIDG CK   + RA EL+DDM +K
Sbjct: 517 ----------NMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRK 566

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVL 375
             IP+ ++Y + +  +     + +A+ +  +M  L  G+ P   +   +I   C +G + 
Sbjct: 567 DIIPDHISYGTVLNGFCSSGLLPEALNLCDQM--LEKGIRPNLVTCNTLIKGYCRSGDMP 624

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDA 402
           +A ++L++++  G +P  ++Y  + D 
Sbjct: 625 KAYEYLSKMISNGIIPDSFSYNTLIDG 651



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 118/253 (46%), Gaps = 19/253 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+++   + ++ EA   F  M +    PD+ +++ +I  L R G+  +A     +ME 
Sbjct: 367 TLLVEICRRDNIL-EAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMER 425

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PD   YTILI  +C+ G       A++ R          ML +G   DVV YN 
Sbjct: 426 SGI--VPDNVIYTILIDGFCRNG---ALSDALKMR--------DEMLARGCFMDVVTYNT 472

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
            ++G CK      A  LF++M ++G +P+  T+ + IR Y     +DKA+ +   M   N
Sbjct: 473 FLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTN 532

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA----EE 408
              P   +Y  +I   C+AG +  A++   +++    +P   +Y  V +   ++    E 
Sbjct: 533 LK-PDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEA 591

Query: 409 PSLLDDGLRKRIR 421
            +L D  L K IR
Sbjct: 592 LNLCDQMLEKGIR 604



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 113/247 (45%), Gaps = 27/247 (10%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI+   ++G +++AL  F  M +   +PD   YN +I+  C+ G   +A+ L + M
Sbjct: 504 TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM--------QTGCRKAIRRRIWEANHLFR------ 276
                   PD  +Y  +++ +C  G+             K IR  +   N L +      
Sbjct: 564 IRKDI--IPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSG 621

Query: 277 ----------LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
                      M+  G +PD  +YN LIDG  K   +E+A  L ++M K+G   N +TYN
Sbjct: 622 DMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYN 681

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             +  +    ++ +A +++RKM  +    P  ++Y+ +I+       + EA  F  E++ 
Sbjct: 682 LILNGFCAEGKMQEAEQVLRKMIEIGIN-PDGATYSSLINGHVSQDNMKEAFRFHDEMLQ 740

Query: 387 GGSVPRE 393
            G VP +
Sbjct: 741 RGLVPDD 747



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 116/270 (42%), Gaps = 33/270 (12%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G  V+ ++   L+  L   G V+ A   +  + +     +VY  N+++NALC+   F
Sbjct: 214 RRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKF 273

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----------------MQTG----- 259
               F L  ME  G     D+ TY  LI++YC+ G                M+ G     
Sbjct: 274 ENVMFFLSDMEGKG--VFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYN 331

Query: 260 ------CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                 C+     R   A  +   ML  G  P+   YN L+   C+   I  A E+FD+M
Sbjct: 332 AILYGLCKIGKYDR---AKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEM 388

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
           +++G +P+ V+++S I   +    + +A+   R+M+  +  VP +  YT +I   C  G 
Sbjct: 389 SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMER-SGIVPDNVIYTILIDGFCRNGA 447

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + +A     E++  G      TY    + L
Sbjct: 448 LSDALKMRDEMLARGCFMDVVTYNTFLNGL 477



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 121/288 (42%), Gaps = 33/288 (11%)

Query: 119 YHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRR-GNGELVTTSSVTCLIK 177
           YH    F +F H+ ++   M     RG  +      +  M R+ G   +    S+     
Sbjct: 126 YH----FPNFKHSSLSLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVKVVESLISTCF 181

Query: 178 VLGEEGLVNEALA-TFYRMKQFRCRPDVY-------------AYNVVINALCRVGNFNKA 223
             G  GL+ + L  T+ + K+ R   + +             A N ++  L R G  + A
Sbjct: 182 YFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLA 241

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             +  ++   G     +VYT  I++++ CK            R+          M  KG 
Sbjct: 242 WEIYGEVVRGGIEL--NVYTLNIMVNALCK-----------DRKFENVMFFLSDMEGKGV 288

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
             D+V YN LI+  C+   +E A +L +  + +G  P  +TYN+ +     + + D+A +
Sbjct: 289 FADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKD 348

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           ++ +M  L    P +++Y  ++  +C    +LEA++   E+   G +P
Sbjct: 349 VLIEMLQLGL-TPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLP 395



 Score = 41.6 bits (96), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 15/156 (9%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           N +TC  +   + R  ++   +++L  M    NG +  + S   LI    +E  + +A  
Sbjct: 606 NLVTCNTLIKGYCRSGDMPKAYEYLSKMI--SNGIIPDSFSYNTLIDGYLKEANLEKAFI 663

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
               M++   + ++  YN+++N  C  G   +A  +L +M   G    PD  TY+ LI+ 
Sbjct: 664 LINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGIN--PDGATYSSLING 721

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
           +     Q   ++A R            ML +G VPD
Sbjct: 722 HVS---QDNMKEAFR--------FHDEMLQRGLVPD 746


>gi|218188821|gb|EEC71248.1| hypothetical protein OsI_03217 [Oryza sativa Indica Group]
          Length = 571

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 123/248 (49%), Gaps = 22/248 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV--NEALATFYRMKQFRCRPDVYAYNVV 210
             L DM  R  G   TT++   L+K    +  V  ++A+  F  +     +PD  +YN V
Sbjct: 159 SLLADM--RAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIP----KPDACSYNTV 212

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           I+ LCR G   +AR L  +M   G    P V TYT LI     +  +  C         +
Sbjct: 213 IDGLCRRGRLPEARDLFAEMIANG--TAPTVVTYTTLI----HWLAREACFD-------D 259

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  LF  M  +G +P+VV Y+ LIDG CK  R   A+EL D M K+  +PN +TY+S I 
Sbjct: 260 ALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVID 319

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                  + +A+E++ +M+ L    P +  +  +I  LC+AGR LEA ++L E+   G  
Sbjct: 320 GLCKEGCLGQAMEILDRMR-LQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIR 378

Query: 391 PREYTYKL 398
           P   T+ L
Sbjct: 379 PNRLTWSL 386



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 18/199 (9%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           +Y  V+ AL    + + AR LL  M   GF   P   TY +L+ ++C             
Sbjct: 140 SYTAVLAALVAHSHLSLARSLLADMRAAGF--APTTATYNVLVKAHCSDAAVP------- 190

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             I +A  +FR +      PD  +YN +IDG C+  R+  A +LF +M   G  P  VTY
Sbjct: 191 --IDDAVRVFRNIP----KPDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTY 244

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            + I + +     D A+++  +M     G+ P   +Y+ +I  LC+ GR   A + L  +
Sbjct: 245 TTLIHWLAREACFDDALKLFDEMAR--RGIMPNVVTYSSLIDGLCKGGRAASAVELLDRM 302

Query: 385 VDGGSVPREYTYKLVCDAL 403
           V    +P   TY  V D L
Sbjct: 303 VKERKLPNTITYSSVIDGL 321



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 121/298 (40%), Gaps = 44/298 (14%)

Query: 116 TEFYHWVER---------FFD------FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSR 160
           T   HW+ R          FD         N +T   +     +G       + L  M +
Sbjct: 245 TTLIHWLAREACFDDALKLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVK 304

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
               +L  T + + +I  L +EG + +A+    RM+    +PD   +  +I  LC  G  
Sbjct: 305 --ERKLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRA 362

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTI-------LISSYCKYGMQTGCRKAIRRRIWEANH 273
            +A   L++M   G R  P+  T+++       ++++ C  G            +  A  
Sbjct: 363 LEASNYLDEMNFAGIR--PNRLTWSLHGRINDAVVTALCSKG-----------EVVRAFQ 409

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +++ M  +G       ++ L++   K   +E+A  +  DM  + CIP R T+++ +R Y 
Sbjct: 410 VYQSMRTRGISTKPTTFHLLVECLSKKNNLEKAAHVVRDMLSERCIPERETWDTIVRAYW 469

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI-IHAL--CEAGRVLEARDFLAELVDGG 388
                 K +  +  +Q  NH   +++  + I IHA   C A   + AR++    V  G
Sbjct: 470 S----KKKLRAVGSVQEYNHEKKSTAKISSIEIHATGPCAAVAKVGARNWKTGTVSEG 523


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 125/289 (43%), Gaps = 53/289 (18%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           N+K +   L++M   G    + T ++   I+VLG +G ++EA     RM    C PDV  
Sbjct: 244 NIKTVMGLLEEMESMGLRPNIYTYTIC--IRVLGRDGKIDEAYRIMKRMDDDGCGPDVVT 301

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           Y V+I+ALC     + A  L  +M+    +  PD  TY  L+  +   G      K    
Sbjct: 302 YTVLIDALCTARKLDDAMCLFTKMKSSSHK--PDKVTYVTLLDKFSDCGHLDKVEK---- 355

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            IW        M   G+ PDVV +  L++  CK  RI  A +L D M K+G +PN  TYN
Sbjct: 356 -IWTE------MEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYN 408

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII-------------------- 365
           + I      N +D A+++   M++L  GV PT+ +Y  +I                    
Sbjct: 409 TLISGLLRANRLDDALDLFSNMESL--GVEPTAYTYILLIDYHGKSGHPGKALETFEKMK 466

Query: 366 ---------------HALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
                          ++L E GR+ EA+    EL   G  P   TY ++
Sbjct: 467 ARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMM 515



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 122/256 (47%), Gaps = 17/256 (6%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G ++   S   LI  L + G   EAL  + RM     +P +  ++ ++ A  +  N 
Sbjct: 186 REAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNI 245

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
                LLE+ME  G R  P++YTYTI I    + G           +I EA  + + M  
Sbjct: 246 KTVMGLLEEMESMGLR--PNIYTYTICIRVLGRDG-----------KIDEAYRIMKRMDD 292

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  PDVV Y  LID  C   +++ A+ LF  M      P++VTY + +  +S    +DK
Sbjct: 293 DGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDK 352

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
             ++  +M+   +  P   ++T +++ALC+AGR+ EA D L  +   G +P  +TY  + 
Sbjct: 353 VEKIWTEMEADGYA-PDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLI 411

Query: 401 DALNAAEEPSLLDDGL 416
             L  A     LDD L
Sbjct: 412 SGLLRANR---LDDAL 424



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 16/224 (7%)

Query: 185  VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
            V  A   F  MK   C PD + YN +I+A  + G  N+   L ++M   G  C P+  TY
Sbjct: 806  VEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRG--CKPNTITY 863

Query: 245  TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             ++IS+  K             R+ +A  L+  ++   F P    +  LIDG  K+ R++
Sbjct: 864  NMVISNLVK-----------SNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLD 912

Query: 305  RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
             A E+FD M   GC PN   YN  +  Y  +  +D A E  ++M  +  G+ P   SYT 
Sbjct: 913  DAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRM--VKEGIRPDLKSYTI 970

Query: 364  IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
            ++  LC AGRV +A  +  +L   G  P    Y L+ + L  ++
Sbjct: 971  LVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQ 1014



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 111/222 (50%), Gaps = 14/222 (6%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            LI  L + G +++A   F  M  + CRP+   YN+++N   ++G+ + A    ++M   G
Sbjct: 901  LIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEG 960

Query: 235  FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             R  PD+ +YTIL+   C  G           R+ +A H F  +   G  PD+VAYN +I
Sbjct: 961  IR--PDLKSYTILVDILCIAG-----------RVDDALHYFEKLKQAGLDPDLVAYNLMI 1007

Query: 295  DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            +G  ++ R E AL LF +M  +G +P+  TYNS I    +V  I++A ++  ++Q +   
Sbjct: 1008 NGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLK 1067

Query: 355  VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             P   +Y  +I     +G    A     +++ GG  P   T+
Sbjct: 1068 -PNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTF 1108



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 14/199 (7%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L E G + EA A F  +K     PD   YN+++    +VG  ++A  LL +M     +C 
Sbjct: 484 LAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMS--KVQCE 541

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PDV     LI +  K G           R+ EA  +F  M      P VV YN L+ G  
Sbjct: 542 PDVIVINSLIDTLYKAG-----------RVEEAWQMFCRMEEMNLAPTVVTYNILLAGLG 590

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K  +I++A++LF+ MN  GC PN +T+N+ +      +E+D A++M  KM  +N   P  
Sbjct: 591 KEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMN-CRPDV 649

Query: 359 SSYTPIIHALCEAGRVLEA 377
            ++  IIH   +  ++  A
Sbjct: 650 LTFNTIIHGFIKQNQIKNA 668



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 111/236 (47%), Gaps = 21/236 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++K   + G V+EA+     M + +C PDV   N +I+ L + G   +A  +  +ME   
Sbjct: 515 MMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRME--E 572

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P V TY IL++   K G           +I +A  LF  M   G  P+ + +N L+
Sbjct: 573 MNLAPTVVTYNILLAGLGKEG-----------QIQKAVQLFESMNGHGCSPNTITFNTLL 621

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK   ++ AL++F  M    C P+ +T+N+ I  +   N+I  AI +  +M+ L   
Sbjct: 622 DCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKLLR- 680

Query: 355 VPTSSSYTPIIHALCEAGRVLEA----RDFLAELVDGGSVPREYTYKLVCDALNAA 406
            P   +   ++  + ++G++ +A     DF  ++  G ++ R +   ++   L  A
Sbjct: 681 -PDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQV--GSNIDRSFWEDVMGGILTEA 733



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 1/154 (0%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A +LF  M   G  PD   YN LID   K+ +I    +L+D+M  +GC PN +TYN  I 
Sbjct: 809 AWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVIS 868

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                N +DKA+++   + + +   PT  ++ P+I  L ++GR+ +A +    +V  G  
Sbjct: 869 NLVKSNRLDKAMDLYYNLVSGDFS-PTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCR 927

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           P    Y ++ +            +  ++ +++GI
Sbjct: 928 PNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGI 961



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 171  SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
            S T L+ +L   G V++AL  F ++KQ    PD+ AYN++IN L R     +A  L  +M
Sbjct: 967  SYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEM 1026

Query: 231  ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            +  G    PD+YTY  LI +    GM           I EA  ++  + F G  P+V  Y
Sbjct: 1027 QNRGI--VPDLYTYNSLILNLGIVGM-----------IEEAGKIYEELQFIGLKPNVFTY 1073

Query: 291  NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            N LI G   +   E A  ++  M   GC PN  T+
Sbjct: 1074 NALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTF 1108



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 16/235 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           TT +   ++++L     V +    F  M++   R +V  Y ++  +L   G   +A   L
Sbjct: 123 TTETCNHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSAL 182

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTG-CRKAIRRRIWEANHLFRLMLFKGFVPD 286
           E+M   GF    + Y+Y  LI     + +Q+G C++A+         ++R M+ +G  P 
Sbjct: 183 EKMREAGFVL--NAYSYNGLI----HFLLQSGFCKEALE--------VYRRMVSEGLKPS 228

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           +  ++ L+    K   I+  + L ++M   G  PN  TY   IR      +ID+A  +M+
Sbjct: 229 LKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMK 288

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           +M +   G P   +YT +I ALC A ++ +A     ++      P + TY  + D
Sbjct: 289 RMDDDGCG-PDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLD 342



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 103/273 (37%), Gaps = 34/273 (12%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           S  G+G    T +   L+  L +   V+ AL  FY+M    CRPDV  +N +I+   +  
Sbjct: 604 SMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQN 663

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM-------------QTGCRKAIR 265
               A +L  QM+       PD  T   L+    K G              Q G    I 
Sbjct: 664 QIKNAIWLFHQMKK---LLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSN--ID 718

Query: 266 RRIWE--------------ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           R  WE              A      ++ +    D      +I   CK  +   A  +F 
Sbjct: 719 RSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVARNVFV 778

Query: 312 DMNKK-GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
              K+ G  P    YN  I  +  V+ ++ A  +  +M++     P + +Y  +I A  +
Sbjct: 779 KFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAG-CAPDTFTYNSLIDAHGK 837

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +G++ E  D   E++  G  P   TY +V   L
Sbjct: 838 SGKINELFDLYDEMLTRGCKPNTITYNMVISNL 870


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 103/224 (45%), Gaps = 13/224 (5%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+     +G   EA      M    C PDV  Y  +I+ L   G   +AR + + M  
Sbjct: 542 TSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIE 601

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C PD  TY  +I ++ K G            +  A  +  LM   G  PD  AYN 
Sbjct: 602 KG--CAPDALTYGTIIQNFSKIG-----------NVEAAGEILELMAKSGVGPDCFAYNS 648

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG  K  R+++A  ++D M   G  PN VT+N  +       + D+A  + ++M   +
Sbjct: 649 LMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKD 708

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
              PT  SYT +I  L +AGRV EA     E++D G +P  +TY
Sbjct: 709 EVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTY 752



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 116/251 (46%), Gaps = 20/251 (7%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  S   +I  L     ++EA   F  M    C PDV A+  +I+  C+ G       LL
Sbjct: 54  TIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLL 113

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
            Q  L  FR  PDV+ YT +I  YCK G + TG +            +   ML  G +PD
Sbjct: 114 NQ-ALKRFR--PDVFLYTSVIHGYCKAGDLDTGFK------------ILEEMLAAGCIPD 158

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
             AY  LID  CK  R++ A ELF+ M K GC+ + VT+ + I   S   ++D+A E+ R
Sbjct: 159 AAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYR 218

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           +M    +  P       +I ALC+AG+V EA +    +V          Y  + D     
Sbjct: 219 EMIERGYE-PYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYC-- 275

Query: 407 EEPSLLDDGLR 417
            +   +DDGL+
Sbjct: 276 -KLGRVDDGLK 285



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 119/257 (46%), Gaps = 15/257 (5%)

Query: 148 VKGLWDFLK-DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           ++GL+D  + + ++    E +   S T +IK L +   ++EA   F ++K   C P+V A
Sbjct: 341 IQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVA 400

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           Y  VI+ L + G         E M   G  C P   TYT++I   CK  M          
Sbjct: 401 YTAVIDGLLKAGRIEDGLKNFEDMS--GSSCVPTRTTYTVVIDGLCKAQM---------- 448

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            + +A  +F  M+ KG VPD + Y  LIDG  K  +++ A +L D M  KG  P  VTY 
Sbjct: 449 -LPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYG 507

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           S +  +  ++ I++A E++ +M+      P    +T ++      GR  EA   L E+  
Sbjct: 508 SIVHGFCKLDMINEAKEVIAQMRE-RGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTA 566

Query: 387 GGSVPREYTYKLVCDAL 403
            G  P    Y  + D L
Sbjct: 567 RGCAPDVILYTSLIDLL 583



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 19/254 (7%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +  L +M+ RG    V     T LI +L   G V EA   F  M +  C PD   Y  +I
Sbjct: 558 YQVLTEMTARGCAPDVIL--YTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTII 615

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
               ++GN   A  +LE M   G    PD + Y  L+  Y K             R+ +A
Sbjct: 616 QNFSKIGNVEAAGEILELMAKSGV--GPDCFAYNSLMDGYVKL-----------ERVDQA 662

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIR 330
             ++  M+  G  P+ V +N L+ G  K  + +RA  LF +M +K  +P   V+Y   I 
Sbjct: 663 FGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILID 722

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                  + +A    ++M  ++ G+ P   +YT +I++L +AGR+ EA+  + ++V  G 
Sbjct: 723 GLGKAGRVSEAFSQFQEM--IDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGV 780

Query: 390 VPREYTYKLVCDAL 403
            P    Y  +   L
Sbjct: 781 NPDVQAYSALITGL 794



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 29/239 (12%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I    + G ++        M    C PD  AY V+I+ LC++G  ++A  L E+M  
Sbjct: 128 TSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRK 187

Query: 233 PGFRCPPDVYTYTILISSYCKYG-MQTGC---RKAIRR--------------------RI 268
            G  C  D  T+  LI +   +G +   C   R+ I R                    ++
Sbjct: 188 SG--CLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKV 245

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            EAN +++ ++ K      VAYN L+DG CK  R++  L+L   M +    P+  TYN  
Sbjct: 246 DEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNIL 305

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           +  +S  N +D A+E+ + +   ++G  P +++YT II  L +A R+ EA+ F  E +D
Sbjct: 306 VAGFSRANRLDDALELFKLLS--SYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALD 362



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 118/267 (44%), Gaps = 27/267 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELP 233
           LI  L + G V+EA   +  +   +      AYN +++  C++G  +   + LL+ +E  
Sbjct: 235 LIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECD 294

Query: 234 GFRCPPDVYTYTILISSYC------------KYGMQTGCR------KAIRRRIWEANHLF 275
            F   PD+ TY IL++ +             K     GC+        I + +++A  + 
Sbjct: 295 NF---PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRME 351

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
               F     DV++Y  +I G   + RI+ A ELF+ +   GC PN V Y + I      
Sbjct: 352 EAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKA 411

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
             I+  ++    M   +  VPT ++YT +I  LC+A  + +A     ++V  G VP   T
Sbjct: 412 GRIEDGLKNFEDMSG-SSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTIT 470

Query: 396 YKLVCDALNAA----EEPSLLDDGLRK 418
           Y  + D  + A    E   LLD  L K
Sbjct: 471 YTTLIDGFSKASKMDEARKLLDVMLTK 497



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 111/251 (44%), Gaps = 29/251 (11%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G V++ L    +M +    PD+  YN+++    R    + A  L +   L  + C P+  
Sbjct: 278 GRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKL--LSSYGCKPNAA 335

Query: 243 TYTILISS-YCKYGMQ---------------TGCRKAI--RRRIWEANHLFRLMLFKGFV 284
           TYT +I   Y    M+               T   K +   +RI EA  LF  +   G  
Sbjct: 336 TYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCS 395

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+VVAY  +IDG  K  RIE  L+ F+DM+   C+P R TY   I        +  A ++
Sbjct: 396 PNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKV 455

Query: 345 MRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC--- 400
             +M  +  G VP + +YT +I    +A ++ EAR  L  ++  G  P   TY  +    
Sbjct: 456 FEQM--VQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGF 513

Query: 401 ---DALNAAEE 408
              D +N A+E
Sbjct: 514 CKLDMINEAKE 524



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 110/245 (44%), Gaps = 34/245 (13%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGE--LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           F++  NV+   + L+ M++ G G       S +   +K+      V++A   + RM    
Sbjct: 618 FSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKL----ERVDQAFGVYDRMVASG 673

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
            +P+   +NV+++ L + G  ++A  L ++M L     PP + +YTILI    K G  + 
Sbjct: 674 IKPNAVTFNVLMHGLFKDGKTDRAFSLFKEM-LEKDEVPPTLVSYTILIDGLGKAGRVSE 732

Query: 260 C----RKAIRR--------------------RIWEANHLFRLMLFKGFVPDVVAYNCLID 295
                ++ I R                    RI EA  L   M+  G  PDV AY+ LI 
Sbjct: 733 AFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALIT 792

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G   +  ++ A ++F +M K+GC PN VTY    R +       +A+++    Q+ + GV
Sbjct: 793 GLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAG---RALDLEAVKQHFSQGV 849

Query: 356 PTSSS 360
              + 
Sbjct: 850 AMEAG 854



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 1/104 (0%)

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA    + M   G +PDVV  N +++G CK  +I++A+ELF +M   GC P  V+YN+ I
Sbjct: 3   EALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVI 62

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
              + ++++D+A +    M + N   P   ++T +IH  C+AG+
Sbjct: 63  SGLASIDKMDEAYKFFNSMID-NGCEPDVIAFTTLIHGFCKAGQ 105



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 15/177 (8%)

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
           L++M   G    PDV    I+++  CK            R+I +A  LF  M   G  P 
Sbjct: 8   LKEMHTTGLM--PDVVNCNIVLNGLCK-----------ARKIDKAIELFLEMPSMGCEPT 54

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           +V+YN +I G     +++ A + F+ M   GC P+ + + + I  +    +    +  M 
Sbjct: 55  IVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQ--PQVGHML 112

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             Q L    P    YT +IH  C+AG +      L E++  G +P    Y ++ D L
Sbjct: 113 LNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPL 169



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 5/120 (4%)

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +E AL+   +M+  G +P+ V  N  +       +IDKAIE+  +M ++    PT  SY 
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCE-PTIVSYN 59

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS----LLDDGLRK 418
            +I  L    ++ EA  F   ++D G  P    +  +      A +P     LL+  L++
Sbjct: 60  TVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR 119


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 121/258 (46%), Gaps = 30/258 (11%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           GNG +  TS+ + +I  L     V  A   F  MK     PDVY Y ++I+   + G   
Sbjct: 482 GNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIK 541

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A   L++M   G  C P V TYT LI +Y K            +++  AN LF LM+ K
Sbjct: 542 QAHNWLDEMVRDG--CEPTVVTYTTLIHAYLK-----------AKKVSVANELFELMIAK 588

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI----------------PNRVTY 325
           G  P+V+ Y  LIDG CK+  IE+A +++  M     I                PN VTY
Sbjct: 589 GCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTY 648

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            + +      +++  A +++  M  ++   P +  Y  +I   C+A ++ EA++   ++V
Sbjct: 649 GALVDGLCKAHKVKDARDLLETM-FVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMV 707

Query: 386 DGGSVPREYTYKLVCDAL 403
           + G  P  YTY  + D L
Sbjct: 708 ERGYNPNVYTYSSLIDRL 725



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 130/282 (46%), Gaps = 10/282 (3%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
           F  +  T  E+       + V+  +   K+M  +G G +    + T LI    + G++ +
Sbjct: 485 FVPDTSTYSEVIGFLCNASRVENAFFLFKEM--KGTGVVPDVYTYTILIDCFSKAGIIKQ 542

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A      M +  C P V  Y  +I+A  +    + A  L E M   G  C P+V TYT L
Sbjct: 543 AHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKG--CFPNVITYTAL 600

Query: 248 ISSYCKYG-MQTGCRKAIRRR----IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           I  YCK G ++  C+   R R    I + +  F++       P+VV Y  L+DG CK ++
Sbjct: 601 IDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHK 660

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           ++ A +L + M   GC PN + Y++ I  +    ++D+A E+  KM    +  P   +Y+
Sbjct: 661 VKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYN-PNVYTYS 719

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
            +I  L +  R+      L+++++    P    Y  + D L+
Sbjct: 720 SLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLS 761



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 115/275 (41%), Gaps = 28/275 (10%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G ++   +V    + L   G   +A    + M      PD   Y+ VI  LC       A
Sbjct: 449 GTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENA 508

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
            FL ++M+  G    PDVYTYTILI  + K G+           I +A++    M+  G 
Sbjct: 509 FFLFKEMKGTGV--VPDVYTYTILIDCFSKAGI-----------IKQAHNWLDEMVRDGC 555

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA-- 341
            P VV Y  LI    K  ++  A ELF+ M  KGC PN +TY + I  Y     I+KA  
Sbjct: 556 EPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQ 615

Query: 342 -------------IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
                        ++M  K++N     P   +Y  ++  LC+A +V +ARD L  +   G
Sbjct: 616 IYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDG 675

Query: 389 SVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
             P    Y  + D    A +     +   K +  G
Sbjct: 676 CEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERG 710



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 29/226 (12%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG---- 255
           C P+   Y+ +I+  C+    ++A+ +  +M   G+   P+VYTY+ LI    K      
Sbjct: 676 CEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYN--PNVYTYSSLIDRLFKDKRLDL 733

Query: 256 --------MQTGCRKAI---------RRRIWEANHLFRLMLF---KGFVPDVVAYNCLID 295
                   ++  C   I           ++ + +  ++LML    KG  P+VV Y  +ID
Sbjct: 734 VLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMID 793

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G  K  ++++ LELF +M  KGC PN VTY   I +      +D+A  ++ +M+   +  
Sbjct: 794 GFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQ-TYWP 852

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
              SSY  +I         + +   L E+   GS P    YK++ D
Sbjct: 853 KHVSSYCKVIEGY--KREFILSLGLLEEVEKNGSAPTILLYKVLID 896



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 146/410 (35%), Gaps = 108/410 (26%)

Query: 116 TEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCL 175
            +F+ W  R   + H       +  VF RG+  +   +FL+++  RG+ + V    +  L
Sbjct: 155 VKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVPEEFLREI--RGDDKEVLGKLLNVL 212

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN----------------------- 212
           I+     GL N AL    R+K F  +P    YN ++                        
Sbjct: 213 IRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGL 272

Query: 213 ------------ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM---- 256
                       ALC+VG + +A  L+E+ +       P+   Y  +IS  C+       
Sbjct: 273 SMDEFTLGFFAQALCKVGKWREALSLIEKEDFV-----PNTILYNKMISGLCEASFFEEA 327

Query: 257 --------QTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                    T C   +            ++++     +  +M+ +G  P    +N L+  
Sbjct: 328 MDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHA 387

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYN------------------------------ 326
            CK+     A +L   M K  C P  V YN                              
Sbjct: 388 YCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLS 447

Query: 327 -----------SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
                      SF R      + +KA +++ +M   N  VP +S+Y+ +I  LC A RV 
Sbjct: 448 AGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMG-NGFVPDTSTYSEVIGFLCNASRVE 506

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
            A     E+   G VP  YTY ++ D  + A       + L + +RDG E
Sbjct: 507 NAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCE 556



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 95/233 (40%), Gaps = 33/233 (14%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C P    +N +++A C+  +F+ A  LL++ME     C P    Y ILI S C  G   G
Sbjct: 374 CYPSYTIFNSLVHAYCKSDDFSYAYKLLKKME--KCECKPGYVVYNILIGSICSGGELPG 431

Query: 260 ------CRKAIRR------------------------RIWEANHLFRLMLFKGFVPDVVA 289
                   KA                           +  +A  +   M+  GFVPD   
Sbjct: 432 PVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTST 491

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y+ +I   C   R+E A  LF +M   G +P+  TY   I  +S    I +A   + +M 
Sbjct: 492 YSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMV 551

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             +   PT  +YT +IHA  +A +V  A +    ++  G  P   TY  + D 
Sbjct: 552 R-DGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDG 603



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 90/210 (42%), Gaps = 20/210 (9%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T +I   G+ G V++ L  F  M    C P+   Y V+IN  C  G+ ++A  LLE+M
Sbjct: 787 TYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEM 846

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +   +  P  V +Y  +I  Y             +R    +  L   +   G  P ++ Y
Sbjct: 847 KQTYW--PKHVSSYCKVIEGY-------------KREFILSLGLLEEVEKNGSAPTILLY 891

Query: 291 NCLIDGCCKTYRIERALELFDDM--NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
             LID   K  R+E ALEL  ++          +  Y S I  +S  ++ID A E+   M
Sbjct: 892 KVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDM 951

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
             +  GV P   ++  ++  L    R  EA
Sbjct: 952 --IRDGVIPDLGTFVHLLMGLIRVRRWEEA 979


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 24/248 (9%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           +G  G + +A A    M + +  P+   +NV+I+  C+  N + A  + E+M+  G +  
Sbjct: 278 MGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLK-- 335

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P V TY  L++  C  G           ++ EA  L   ML     P+V+ YN LI+G C
Sbjct: 336 PTVVTYNSLVNGLCNEG-----------KLNEAKVLLDEMLSSNLKPNVITYNALINGYC 384

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPT 357
           K   +E A ELFD++ K+G  PN +T+N+ +  Y    ++++A  + + M  L  G +P 
Sbjct: 385 KKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVM--LEKGFLPN 442

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP-------- 409
           +S+Y  +I   C  G++ E ++ L E+   G      TY ++  A    +EP        
Sbjct: 443 ASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLID 502

Query: 410 SLLDDGLR 417
            +LD GL+
Sbjct: 503 EMLDKGLK 510



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 13/229 (5%)

Query: 170 SSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           S ++C  L+  L +E         +  M + +  P++  +N VIN LC+VG  NKA  ++
Sbjct: 194 SVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVV 253

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           + M++ GF   P+V TY  LI  YCK G + G       ++++A+ + + M+     P+ 
Sbjct: 254 DDMKVWGFW--PNVVTYNTLIDGYCKMG-RVG-------KMYKADAILKEMVENKVSPNS 303

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V +N LIDG CK   +  AL++F++M  +G  P  VTYNS +       ++++A  ++ +
Sbjct: 304 VTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDE 363

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           M + N   P   +Y  +I+  C+   + EAR+    +   G  P   T+
Sbjct: 364 MLSSNLK-PNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITF 411



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 127/293 (43%), Gaps = 51/293 (17%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +  N+       ++M  +G    V T +   L+  L  EG +NEA      M     +
Sbjct: 313 FCKDENLSAALKVFEEMQSQGLKPTVVTYN--SLVNGLCNEGKLNEAKVLLDEMLSSNLK 370

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V  YN +IN  C+     +AR L + +   G    P+V T+  L+  YCK+G      
Sbjct: 371 PNVITYNALINGYCKKKLLEEARELFDNIGKQGL--TPNVITFNTLLHGYCKFG------ 422

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK---------------------- 299
                ++ EA  L ++ML KGF+P+   YNCLI G C+                      
Sbjct: 423 -----KMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKAD 477

Query: 300 --TYRI-----------ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
             TY I           ++A  L D+M  KG  P+ +TYN  +  Y +   +  A+ + +
Sbjct: 478 TVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRK 537

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           +M+          +Y  +I   C  G++ +A   L E+++ G +P   TY+++
Sbjct: 538 QMEKEGRWANV-VTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEII 589



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 4/128 (3%)

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
            V++ N L+    K         ++ +M ++   PN +T+N+ I     V +++KA +++
Sbjct: 194 SVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVV 253

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRV---LEARDFLAELVDGGSVPREYTYKLVCDA 402
             M+      P   +Y  +I   C+ GRV    +A   L E+V+    P   T+ ++ D 
Sbjct: 254 DDMKVWGFW-PNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDG 312

Query: 403 LNAAEEPS 410
               E  S
Sbjct: 313 FCKDENLS 320


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 16/244 (6%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G   T  S   LI    + G + E       M++FR  PDV+ Y+ +I+ LC+    
Sbjct: 259 RKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQL 318

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
             A  L ++M   G   P DV T+T LI+  CK G           R+  A  +++ M  
Sbjct: 319 EDANHLFKEMCDRGL-VPNDV-TFTTLINGQCKNG-----------RVDLALEIYQQMFT 365

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           KG   D+V YN LIDG CK      A +   +M K+G IP++ TY + +       +++ 
Sbjct: 366 KGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLEL 425

Query: 341 AIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A+EM ++M  +  G+   + ++T II  LC  G++++A   L E++  G  P + TY +V
Sbjct: 426 ALEMRKEM--VKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMV 483

Query: 400 CDAL 403
            D  
Sbjct: 484 MDGF 487



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 115/226 (50%), Gaps = 18/226 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGC 260
           P+VY +NV++N LC+ G    A+ + +++   G +  P   ++  LI+ YCK G ++ G 
Sbjct: 230 PNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQ--PTAVSFNTLINGYCKSGNLEEGF 287

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
           R    + + E   +F         PDV  Y+ LIDG CK  ++E A  LF +M  +G +P
Sbjct: 288 R---LKMVMEEFRVF---------PDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVP 335

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARD 379
           N VT+ + I        +D A+E+ ++M     G+      Y  +I  LC+ G   EAR 
Sbjct: 336 NDVTFTTLINGQCKNGRVDLALEIYQQM--FTKGLKADLVLYNTLIDGLCKGGYFREARK 393

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           F+ E+   G +P ++TY  + D      +  L  +  ++ +++GI+
Sbjct: 394 FVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQ 439



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 121/280 (43%), Gaps = 34/280 (12%)

Query: 154 FLKDMSRRGNGELVTTS-SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
             K+M  RG   LV    + T LI    + G V+ AL  + +M     + D+  YN +I+
Sbjct: 324 LFKEMCDRG---LVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLID 380

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG---MQTGCRKAIRR--- 266
            LC+ G F +AR  + +M   G    PD +TYT L+   CK G   +    RK + +   
Sbjct: 381 GLCKGGYFREARKFVGEMTKRGL--IPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGI 438

Query: 267 ------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
                             +I +A    R ML  G  PD   Y  ++DG CK   ++   +
Sbjct: 439 QLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFK 498

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           L  +M   G IP  +TYN  +       ++  A  ++  M NL   VP   +Y  ++   
Sbjct: 499 LLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGV-VPDDITYNILLQGH 557

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           C+ G++ + ++   E+   G V    +Y+ +   L+ A +
Sbjct: 558 CKHGKLGDFQNVKTEM---GLVSDYASYRSLLHELSKASK 594



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 6/143 (4%)

Query: 259 GCRKAIRRRIWEANHLFRL-----MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           GC+  + R I  ++ +  L     +L  G+ P+V  +N L++  CK  +++ A  +FD++
Sbjct: 199 GCKCLLERMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEI 258

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            K G  P  V++N+ I  Y     +++   +   M+      P   +Y+ +I  LC+  +
Sbjct: 259 RKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEF-RVFPDVFTYSALIDGLCKECQ 317

Query: 374 VLEARDFLAELVDGGSVPREYTY 396
           + +A     E+ D G VP + T+
Sbjct: 318 LEDANHLFKEMCDRGLVPNDVTF 340


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 120/254 (47%), Gaps = 28/254 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G++ EA +   RM Q  C P+V +YN++I+  C+  N  KA   L +ME  G
Sbjct: 70  LISCLCKAGMLAEAESYLKRMPQ-HCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELG 128

Query: 235 FRCPPDVYTYTILISSYCKYGMQT------------GCRKAI------------RRRIWE 270
              PP  + Y+ ++ S+CK G  +            GC   I             R+I E
Sbjct: 129 H--PPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHE 186

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  LFR M  +G  PDVV YN +I G CK  +++ A+ L + M ++   P  VTY + I 
Sbjct: 187 ARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLID 246

Query: 331 YYSVVNEIDKAIEMMRKM-QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
           +      + +A E+  KM +        + S   +I+ LC+A R  EA++   E+   G 
Sbjct: 247 HLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGI 306

Query: 390 VPREYTYKLVCDAL 403
            P   TY  + + L
Sbjct: 307 SPTVVTYNTLLEGL 320



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 129/322 (40%), Gaps = 71/322 (22%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +  NV    D   +M  +G    +   +V  L+  L     ++EA   F  M    C+
Sbjct: 143 FCKTGNVSKAMDVFAEMPAKGCEPDIVNFNV--LLSGLWRARKIHEARELFRSMNSRGCK 200

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------ 255
           PDV  YN +I  LC+    ++A FLLE+M+       P   TYT LI   CK+       
Sbjct: 201 PDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVS--PTFVTYTTLIDHLCKFARLQQAY 258

Query: 256 ----------------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
                                 +  G  KA  RR  EA  +F+ M  +G  P VV YN L
Sbjct: 259 EVFEKMAEGPCPCTEPAYSVLILINGLCKA--RRPGEAKEMFQEMRGRGISPTVVTYNTL 316

Query: 294 IDG-----------------------------------CCKTYRIERALELFDDMNKKGC 318
           ++G                                    CKT ++E A +L   M  KG 
Sbjct: 317 LEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGF 376

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           +P+   +   +   +    +D A E+ ++M  +N      SS   ++  +   G V EA+
Sbjct: 377 VPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNI-LLDGILRRGSVDEAK 435

Query: 379 DFLAELVDGGSVPREYTY-KLV 399
           DFL ++ D G VP ++TY KLV
Sbjct: 436 DFLKQMTDTGIVPDKFTYDKLV 457



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 127/269 (47%), Gaps = 28/269 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + +  N++    FL++M   G+    T  + + +++   + G V++A+  F  M    C 
Sbjct: 108 YCKARNIEKALAFLREMEELGHPP--TPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCE 165

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  +NV+++ L R    ++AR L   M   G  C PDV TY  +I+  CK+       
Sbjct: 166 PDIVNFNVLLSGLWRARKIHEARELFRSMNSRG--CKPDVVTYNTMIAGLCKW------- 216

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               +++ EA  L   M  +   P  V Y  LID  CK  R+++A E+F+ M +  C   
Sbjct: 217 ----KKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCT 272

Query: 322 RVTYNSFIRYYSVVNEIDK------AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRV 374
              Y+  I    ++N + K      A EM ++M+    G+ PT  +Y  ++  L    ++
Sbjct: 273 EPAYSVLI----LINGLCKARRPGEAKEMFQEMR--GRGISPTVVTYNTLLEGLLSTAKL 326

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +A +    ++D    P  +TY+++  +L
Sbjct: 327 QDAMELTYFMLDQVPAPNMFTYEILISSL 355



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 128/290 (44%), Gaps = 45/290 (15%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+   + G      +   RM +    P+   YN +I+ LC+ G   +A   L++M    
Sbjct: 35  LIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQ-- 92

Query: 235 FRCPPDVYTYTILISSYCKYG---------------------------MQTGCRKAIRRR 267
             C P+V +Y I+I  YCK                             +Q+ C+      
Sbjct: 93  -HCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTG---N 148

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + +A  +F  M  KG  PD+V +N L+ G  +  +I  A ELF  MN +GC P+ VTYN+
Sbjct: 149 VSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNT 208

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I       ++D+A+ ++ +M+  +   PT  +YT +I  LC+  R+ +A +   ++ +G
Sbjct: 209 MIAGLCKWKKLDEAVFLLERMKQEDVS-PTFVTYTTLIDHLCKFARLQQAYEVFEKMAEG 267

Query: 388 GSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPI 437
                E  Y ++           +L +GL K  R G      Q M+ + I
Sbjct: 268 PCPCTEPAYSVL-----------ILINGLCKARRPGEAKEMFQEMRGRGI 306



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 35/170 (20%)

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + +A  +   M + GF PDV ++  LI G  K+   +R     D M + G  PN + YN+
Sbjct: 10  VAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNN 69

Query: 328 FIRY----------------------------------YSVVNEIDKAIEMMRKMQNLNH 353
            I                                    Y     I+KA+  +R+M+ L H
Sbjct: 70  LISCLCKAGMLAEAESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGH 129

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             PT  +Y+ I+ + C+ G V +A D  AE+   G  P    + ++   L
Sbjct: 130 P-PTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGL 178



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 83/188 (44%), Gaps = 13/188 (6%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           RG G   T  +   L++ L     + +A+   Y M      P+++ Y ++I++LC+    
Sbjct: 302 RGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQV 361

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            +A  LL  M   GF   P +  + +L+S   + G           R+ +A  L++ M  
Sbjct: 362 EEAFKLLSAMRDKGF--VPSLKIWEVLLSRLARAG-----------RLDDAFELYKEMSR 408

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
                 V + N L+DG  +   ++ A +    M   G +P++ TY+  +       + D+
Sbjct: 409 INCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQ 468

Query: 341 AIEMMRKM 348
           A +++ ++
Sbjct: 469 ARKLVEEL 476


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 129/284 (45%), Gaps = 49/284 (17%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
             K+M  RG    V T S+  LI        V+   + F +  +   +PDV  +  +I+ 
Sbjct: 62  LFKEMEFRGIKYNVCTLSI--LINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDG 119

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           +CR+G    A  LL++M L G  C PDV T   L+  YC  G           +I +   
Sbjct: 120 VCRIGKTELAAGLLKEMGLVG--CVPDVVTCNSLMRGYCSQG-----------KIDKVRK 166

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +F LM+ KG  PDV +Y+  I+G CK  +I+ A+ELFD+M+ +G +PN VTYN+ I+   
Sbjct: 167 IFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALC 226

Query: 334 VVNEIDKAIEMMRKM----------------------QNLNHGV------------PTSS 359
                  A  + RKM                       NL+  +            P   
Sbjct: 227 QALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLV 286

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            YT II+ +C + +V +A++ L+ L+  G  P  +TY  + D L
Sbjct: 287 VYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGL 330



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 19/201 (9%)

Query: 152 WDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
            +   +MS RG    V  ++VT   LIK L +     +A   F +M      PD+ AY+ 
Sbjct: 200 MELFDEMSHRG----VVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYST 255

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +++  C+ GN ++   L ++M+    +  PD+  YTI+I+  C+            R++ 
Sbjct: 256 LLDGFCKQGNLDEMLVLFQEMQRRLVK--PDLVVYTIIINGMCR-----------SRKVK 302

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A  +   ++ +G  PDV  Y  L+DG C+   I  AL LF  M + GC+P   +YN  +
Sbjct: 303 DAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLL 362

Query: 330 RYYSVVNEIDKAIEMMRKMQN 350
           +     N+    ++++ +M +
Sbjct: 363 QGCLQHNDTSTVVQLIHEMAD 383



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 14/227 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA+  F  M      P+   YN +I ALC+      A+ L  +M   G    PD+  Y
Sbjct: 196 IDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGL--SPDILAY 253

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           + L+  +CK G            + E   LF+ M  +   PD+V Y  +I+G C++ +++
Sbjct: 254 STLLDGFCKQG-----------NLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVK 302

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A E+   +  +G  P+  TY + +        I +A+ + RKM+  +  +P S SY  +
Sbjct: 303 DAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEE-DGCMPGSCSYNVL 361

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
           +    +          + E+ D G      T   + D L   + P++
Sbjct: 362 LQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFLKDFLPGNDSPAI 408


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 14/231 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + ++  L +EG V EA      M +    P+V  YN +++  C     ++A  + + M  
Sbjct: 282 STVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVC 341

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            GF   PDV +Y+ LI+ YCK            +RI +A +LF  M  K  +P+ V Y+ 
Sbjct: 342 KGF--APDVVSYSTLINGYCKI-----------QRIEKAMYLFEEMCRKELIPNTVTYST 388

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+ G C   R++ A+ LF +M  +G IP+ V+Y   + Y      +D+AI +++ ++  N
Sbjct: 389 LMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 448

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              P    YT +I  +C AG +  ARD  + L   G  P  +TY ++ + L
Sbjct: 449 MD-PDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGL 498



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 125/298 (41%), Gaps = 82/298 (27%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+ L  EG + E L  F +M     +P+V  Y  +IN LC+VG+ + A  LL  ME   
Sbjct: 144 LIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQG- 202

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PDV  YT +I S CK            R++ +A +LF  M+ +G  P +  YN LI
Sbjct: 203 -NCQPDVVVYTSIIDSLCK-----------DRQVTQAFNLFSEMIHQGISPSIFTYNSLI 250

Query: 295 -----------------------------------DGCCKTYRIERALELFDDMNKKGCI 319
                                              D  CK  ++  A ++ D M K+G  
Sbjct: 251 HALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVE 310

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKM------------QNLNHG------------- 354
           PN VTYN+ +  + + +E+D+A+++   M              L +G             
Sbjct: 311 PNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYL 370

Query: 355 ---------VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                    +P + +Y+ ++H LC  GR+ +A     E+V  G +P   +Y ++ D L
Sbjct: 371 FEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYL 428



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 29/266 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL++F RM      P +  +  ++ ++ ++ +++    L  QM+   F  PP++YT 
Sbjct: 49  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMD--SFGIPPNIYTL 106

Query: 245 TILISSYC----------------KYGMQTGCRK--------AIRRRIWEANHLFRLMLF 280
            ILI+S+C                K G Q              +  +I E  HLF  M+ 
Sbjct: 107 NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG 166

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +GF P+VV Y  LI+G CK      A+ L   M +  C P+ V Y S I       ++ +
Sbjct: 167 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 226

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A  +  +M  ++ G+ P+  +Y  +IHALC           L E+V+   +P    +  V
Sbjct: 227 AFNLFSEM--IHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTV 284

Query: 400 CDALNAAEEPSLLDDGLRKRIRDGIE 425
            DAL    +     D +   I+ G+E
Sbjct: 285 VDALCKEGKVMEAHDVVDMMIKRGVE 310



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 22/219 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---ELPGFRCPPDV 241
           ++EA+  F  M      PDV +Y+ +IN  C++    KA +L E+M   EL      P+ 
Sbjct: 329 MDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL-----IPNT 383

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            TY+ L+   C  G           R+ +A  LF  M+ +G +PD V+Y  L+D  CK  
Sbjct: 384 VTYSTLMHGLCHVG-----------RLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNR 432

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
           R++ A+ L   +      P+   Y   I       E++ A ++   +   + G+ P   +
Sbjct: 433 RLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLS--SKGLHPNVWT 490

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           YT +I+ LC+ G + EA     E+   G  P   TY L+
Sbjct: 491 YTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLI 529



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 116/238 (48%), Gaps = 19/238 (7%)

Query: 149 KGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           K ++ F ++M R+   EL+  T + + L+  L   G + +A+A F+ M      PD  +Y
Sbjct: 366 KAMYLF-EEMCRK---ELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY 421

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
            ++++ LC+    ++A  LL+ +E  G    PD+  YTI+I   C+ G            
Sbjct: 422 CILLDYLCKNRRLDEAIALLKAIE--GSNMDPDIQIYTIVIDGMCRAG-----------E 468

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           +  A  LF  +  KG  P+V  Y  +I+G C+   +  A +LF +M +KG  PN  TYN 
Sbjct: 469 LEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNL 528

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
             R +   NE  + I+++++M         S+S T ++  L + G     +  L+E +
Sbjct: 529 ITRGFLRNNETLRGIQLLQEMLARGFSADVSTS-TVLVEMLSDDGLDQSVKQILSEFL 585


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 128/292 (43%), Gaps = 66/292 (22%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+ L +   + +AL    +M      PDVY Y  VI+ALC     ++AR  LE+M  
Sbjct: 15  TSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMAN 74

Query: 233 PGFRCPPDVYTYTILISSYCKYG-------------------------MQTGCRKAIRRR 267
                 P+V TYT+LI   CK G                         + +G  KA   R
Sbjct: 75  RNL--TPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKA--ER 130

Query: 268 IWEANHLFRLMLF-----------------------------------KGFVPDVVAYNC 292
             EA  L   M++                                   +GF PDVV Y+C
Sbjct: 131 ASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSC 190

Query: 293 LIDGCCKTYRIERALELFDDMNKKG-CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
           LIDG CK  R++ A++LF  M K G C+PN VTYNS I  +  + ++D+A+ ++ +M   
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
               P   +YT +++  C+  R+ +A D L ++   G  P   T+  + D L
Sbjct: 251 GSS-PDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGL 301



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 136/311 (43%), Gaps = 74/311 (23%)

Query: 173 TCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           +CLI  L +EG + EA+  F RM K   C P+   YN +I+  CR+G  ++A  LLE+M 
Sbjct: 189 SCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMA 248

Query: 232 LPGFRCPPDVYTYTILISSYCKYG---------------------------MQTGCRKAI 264
             G    PDV TYT L++ +CK                             M   CR+  
Sbjct: 249 ETGS--SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRE-- 304

Query: 265 RRRIWEANHLFRLM--------------LFKGFV-------------------PDVVAYN 291
             R+ +A H+   M              +  G+                    P+VV++N
Sbjct: 305 -NRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFN 363

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +I G CK  R   A+EL ++  ++ C P+ V Y + I       ++D+A  + RKM   
Sbjct: 364 IMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEE 423

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA----E 407
              +P S +Y+ ++  LC AG +  AR +    ++ G VP   TY L+ DA   A    +
Sbjct: 424 PGCLPNSITYSTLVTGLCNAGMLDRARGY----IEKGCVPNIGTYNLLIDAFRKANRDED 479

Query: 408 EPSLLDDGLRK 418
              LLDD +++
Sbjct: 480 ARELLDDMVQR 490



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 119/249 (47%), Gaps = 25/249 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   +   +D L  M+R+G    V T   T L+  L  E  +++A+     M++  C 
Sbjct: 266 FCKLARLDDAYDLLNQMTRKGLTPDVVT--FTSLMDGLCRENRLSDAVHILGEMRRKSCS 323

Query: 202 PDVYAYNVVINALCRVGNFNKAR-FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           P VY YN +++  CR     +AR F+LE+M+     CPP+V ++ I+I   CK       
Sbjct: 324 PTVYTYNTILDGYCRANQLEEARKFMLEEMD-----CPPNVVSFNIMIRGLCKVN----- 373

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM-NKKGCI 319
                 R  EA  L      +   PDVV Y  +IDG C+  +++ A  ++  M  + GC+
Sbjct: 374 ------RSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCL 427

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN +TY++ +        +D+A   + K       VP   +Y  +I A  +A R  +AR+
Sbjct: 428 PNSITYSTLVTGLCNAGMLDRARGYIEK-----GCVPNIGTYNLLIDAFRKANRDEDARE 482

Query: 380 FLAELVDGG 388
            L ++V  G
Sbjct: 483 LLDDMVQRG 491



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 117/262 (44%), Gaps = 18/262 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +G  V      L  M ++     VT +S   LI  L +    +EA      M    C 
Sbjct: 91  LCKGGRVDEAVALLSKMRKKCVPTAVTYNS---LISGLCKAERASEAYDLLEEMVYSGCI 147

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD++ Y  +I   C+    + A  + EQ+   GFR  PDV TY+ LI   CK G      
Sbjct: 148 PDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR--PDVVTYSCLIDGLCKEG------ 199

Query: 262 KAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                R+ EA  LF  M+  G  +P+ V YN LI G C+  +++ A+ L + M + G  P
Sbjct: 200 -----RLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 254

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + VTY + +  +  +  +D A +++ +M       P   ++T ++  LC   R+ +A   
Sbjct: 255 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL-TPDVVTFTSLMDGLCRENRLSDAVHI 313

Query: 381 LAELVDGGSVPREYTYKLVCDA 402
           L E+      P  YTY  + D 
Sbjct: 314 LGEMRRKSCSPTVYTYNTILDG 335



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 15/204 (7%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C  D   Y  +I  LC+V    +A   L +M   GF   PDVYTYT +I + C       
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFH--PDVYTYTAVIHALC------- 57

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
               +  R+ EA      M  +   P+VV Y  LIDG CK  R++ A+ L   M KK C+
Sbjct: 58  ----VENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CV 112

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P  VTYNS I          +A +++ +M   +  +P   +YT +I   C++ +  +A  
Sbjct: 113 PTAVTYNSLISGLCKAERASEAYDLLEEMV-YSGCIPDIFTYTTLITGFCKSKKSDDALR 171

Query: 380 FLAELVDGGSVPREYTYKLVCDAL 403
              +LV  G  P   TY  + D L
Sbjct: 172 VFEQLVARGFRPDVVTYSCLIDGL 195



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 16/181 (8%)

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           C  D  TYT LI   CK            +R+ +A      M+ KGF PDV  Y  +I  
Sbjct: 7   CSADFVTYTSLIQGLCKV-----------KRLEQALIFLGKMVSKGFHPDVYTYTAVIHA 55

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            C   R+  A +  ++M  +   PN VTY   I        +D+A+ ++ KM+     VP
Sbjct: 56  LCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR--KKCVP 113

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
           T+ +Y  +I  LC+A R  EA D L E+V  G +P  +TY  +      +++    DD L
Sbjct: 114 TAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKS---DDAL 170

Query: 417 R 417
           R
Sbjct: 171 R 171


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 125/292 (42%), Gaps = 32/292 (10%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M  +F  G   KG   F +  +RR    +    S + LI  L + G  NE    FY MK+
Sbjct: 524 MDCMFKAGEPEKGRAMFEEIKARRF---VPDARSYSILIHGLIKAGFANETYELFYSMKE 580

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-- 255
             C  D  AYN+VI+  C+ G  NKA  LLE+M+  GF   P V TY  +I    K    
Sbjct: 581 QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFE--PTVVTYGSVIDGLAKIDRL 638

Query: 256 ------MQTGCRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAYNCL 293
                  +    K I                  RI EA  +   ++ KG  P++  +N L
Sbjct: 639 DEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSL 698

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +D   K   I  AL  F  M +  C PN+VTY   I     V + +KA    ++MQ    
Sbjct: 699 LDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQ--KQ 756

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           G+ P++ SYT +I  L +AG + EA          G VP    Y  + + L+
Sbjct: 757 GMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLS 808



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 128/294 (43%), Gaps = 20/294 (6%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           +N+A E++ W ER  +  H   +   + +V AR  N   L   L +MS  G G  V T  
Sbjct: 78  VNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNT-- 135

Query: 172 VTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
             C+  VLG  +   + E       M++F+ RP   AY  +I A   V + +    L +Q
Sbjct: 136 --CIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQ 193

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M+  G+   P V+ +T LI  + K G           R+  A  L   M       D+V 
Sbjct: 194 MQELGYE--PTVHLFTTLIRGFAKEG-----------RVDSALSLLDEMKSSSLDADIVL 240

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN  ID   K  +++ A + F ++   G  P+ VTY S I      N +D+A+EM   ++
Sbjct: 241 YNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLE 300

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             N  VP + +Y  +I     AG+  EA   L      GS+P    Y  +   L
Sbjct: 301 K-NRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCL 353



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 107/240 (44%), Gaps = 22/240 (9%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LIK     G   +    +  M    C PD+   N  ++ + + G   K R + E  E+
Sbjct: 486 TSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFE--EI 543

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              R  PD  +Y+ILI    K G              E   LF  M  +G V D  AYN 
Sbjct: 544 KARRFVPDARSYSILIHGLIKAGFAN-----------ETYELFYSMKEQGCVLDTRAYNI 592

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI----EMMRKM 348
           +IDG CK  ++ +A +L ++M  KG  P  VTY S I   + ++ +D+A     E   K 
Sbjct: 593 VIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKR 652

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
             LN  +     Y+ +I    + GR+ EA   L EL+  G  P  YT+  + DAL  AEE
Sbjct: 653 IELNVVI-----YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEE 707



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 131/299 (43%), Gaps = 20/299 (6%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           ++ A +F+H +E       +E+T   M  V  + N +    +  + + +  N  +  T +
Sbjct: 254 VDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEK--NRRVPCTYA 310

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              +I   G  G  +EA +   R +     P V AYN ++  L ++G  ++A  + E+M+
Sbjct: 311 YNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK 370

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
                  P++ TY ILI   C+ G           ++  A  L   M   G  P+V   N
Sbjct: 371 KDA---APNLSTYNILIDMLCRAG-----------KLDTAFELRDSMQKAGLFPNVRTVN 416

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            ++D  CK+ +++ A  +F++M+ K C P+ +T+ S I     V  +D A ++  KM  L
Sbjct: 417 IMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM--L 474

Query: 352 NHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
           +    T+S  YT +I      GR  +      ++++    P         D +  A EP
Sbjct: 475 DSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEP 533



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 21/221 (9%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI   G+ G ++EA      + Q    P++Y +N +++AL +    N+A    + M+ 
Sbjct: 661 SSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMK- 719

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +C P+  TY ILI+  CK            R+  +A   ++ M  +G  P  ++Y  
Sbjct: 720 -ELKCTPNQVTYGILINGLCKV-----------RKFNKAFVFWQEMQKQGMKPSTISYTT 767

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +I G  K   I  A  LFD     G +P+   YN+ I   S  N    A  +  + +   
Sbjct: 768 MISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETR--R 825

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
            G+P  +    ++         L   D L +    G+V RE
Sbjct: 826 RGLPIHNKTCVVLL------DTLHKNDCLEQAAIVGAVLRE 860


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M     +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI+ +CK            RR+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIAGHCK-----------NRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR L+A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ +   +   G R  P V ++  L++ Y + G        
Sbjct: 136 LYFFNILMHRFCKEGDIRVAQLVFNAITKWGLR--PSVVSFNTLMNGYIRLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  +++ A  LFD+M  KG +P
Sbjct: 186 ------DLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A 
Sbjct: 240 NGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAH 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDG 320



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 26/227 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++  GL+D + D     NG   TT     LI    +   V+ A+  + +
Sbjct: 217 CKE-----SKMDDANGLFDEMLDKGLVPNGVTFTT-----LIAGHCKNRRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A  L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK--PDKITYTTLIDGCCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFEH--RKRMIQEN--IRL--------DDVAYTALISGLCQEGRYLDAEKVLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
              G  P+  TY   I  +    ++    +++++MQ   H VP+  S
Sbjct: 373 LSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGH-VPSVVS 418


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A+E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWGLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M   G +P
Sbjct: 186 ------DLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +  A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 240 NGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDG 320



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG +    + T LI    + G V  A+  + +
Sbjct: 217 CKE-----SKMDDANELFDEMLD-----NGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK--PDKITYTTLIDGSCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETALE--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 129/279 (46%), Gaps = 51/279 (18%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG +  A + F  + +   RP V ++N +IN   R+G+ +K   L   M   G    PD
Sbjct: 148 KEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVH--PD 205

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           VYT T+LI+  CK             ++ EAN LF  ML KG VP+ V +  LIDG CK+
Sbjct: 206 VYTNTVLINGLCK-----------ESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKS 254

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFI-----------------------------RY 331
            R++ ALE++  M ++G  P+ +TYN+ I                              Y
Sbjct: 255 GRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITY 314

Query: 332 YSVVN------EIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAEL 384
            ++++      +++ A E+ ++M  +   +     +YT +I  LC+ GR ++A   L E+
Sbjct: 315 TTLIDGSCKEGDLETAFELRKRM--IEESIRLDDVAYTALISGLCQEGRAVDAEKMLREM 372

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           +  G  P   TY ++ +      +       L++  RDG
Sbjct: 373 LSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDG 411



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 102/220 (46%), Gaps = 16/220 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI  L +E  ++EA   F  M      P+   +  +I+  C+ G  + A  + +QM  
Sbjct: 210 TVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLR 269

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G+   PD+ TY  LI     YG+   CRK     + +A  L   M  KG  PD + Y  
Sbjct: 270 QGY--SPDLITYNTLI-----YGL---CRKG---DLKQARDLIVEMSMKGLKPDKITYTT 316

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LIDG CK   +E A EL   M ++    + V Y + I           A +M+R+M  L+
Sbjct: 317 LIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREM--LS 374

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
            G+ P + +YT II+  C+ G V  A   L E+   G VP
Sbjct: 375 VGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVP 414



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 26/178 (14%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ AL  + +M +    PD+  YN +I  LCR G+  +AR L+ +M
Sbjct: 243 TFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEM 302

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQTG-------CRKAIR----------------R 266
            + G +  PD  TYT LI   CK G ++T          ++IR                 
Sbjct: 303 SMKGLK--PDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEG 360

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           R  +A  + R ML  G  P+   Y  +I+G CK   ++ A +L  +M + G +P  VT
Sbjct: 361 RAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVPCVVT 418


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 14/231 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + ++  L +EG V EA      M +    P+V  YN +++  C     ++A  + + M  
Sbjct: 273 STVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVC 332

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            GF   PDV +Y+ LI+ YCK            +RI +A +LF  M  K  +P+ V Y+ 
Sbjct: 333 KGF--APDVVSYSTLINGYCKI-----------QRIEKAMYLFEEMCRKELIPNTVTYST 379

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+ G C   R++ A+ LF +M  +G IP+ V+Y   + Y      +D+AI +++ ++  N
Sbjct: 380 LMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 439

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              P    YT +I  +C AG +  ARD  + L   G  P  +TY ++ + L
Sbjct: 440 MD-PDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGL 489



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 125/298 (41%), Gaps = 82/298 (27%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+ L  EG + E L  F +M     +P+V  Y  +IN LC+VG+ + A  LL  ME   
Sbjct: 135 LIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQG- 193

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PDV  YT +I S CK            R++ +A +LF  M+ +G  P +  YN LI
Sbjct: 194 -NCQPDVVVYTSIIDSLCK-----------DRQVTQAFNLFSEMIHQGISPSIFTYNSLI 241

Query: 295 -----------------------------------DGCCKTYRIERALELFDDMNKKGCI 319
                                              D  CK  ++  A ++ D M K+G  
Sbjct: 242 HALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVE 301

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKM------------QNLNHG------------- 354
           PN VTYN+ +  + + +E+D+A+++   M              L +G             
Sbjct: 302 PNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYL 361

Query: 355 ---------VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                    +P + +Y+ ++H LC  GR+ +A     E+V  G +P   +Y ++ D L
Sbjct: 362 FEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYL 419



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 29/266 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL++F RM      P +  +  ++ ++ ++ +++    L  QM+   F  PP++YT 
Sbjct: 40  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMD--SFGIPPNIYTL 97

Query: 245 TILISSYC----------------KYGMQTGCRK--------AIRRRIWEANHLFRLMLF 280
            ILI+S+C                K G Q              +  +I E  HLF  M+ 
Sbjct: 98  NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG 157

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +GF P+VV Y  LI+G CK      A+ L   M +  C P+ V Y S I       ++ +
Sbjct: 158 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 217

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A  +  +M  ++ G+ P+  +Y  +IHALC           L E+V+   +P    +  V
Sbjct: 218 AFNLFSEM--IHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTV 275

Query: 400 CDALNAAEEPSLLDDGLRKRIRDGIE 425
            DAL    +     D +   I+ G+E
Sbjct: 276 VDALCKEGKVMEAHDVVDMMIKRGVE 301



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 22/219 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---ELPGFRCPPDV 241
           ++EA+  F  M      PDV +Y+ +IN  C++    KA +L E+M   EL      P+ 
Sbjct: 320 MDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL-----IPNT 374

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            TY+ L+   C  G           R+ +A  LF  M+ +G +PD V+Y  L+D  CK  
Sbjct: 375 VTYSTLMHGLCHVG-----------RLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNR 423

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
           R++ A+ L   +      P+   Y   I       E++ A ++   +   + G+ P   +
Sbjct: 424 RLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLS--SKGLHPNVWT 481

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           YT +I+ LC+ G + EA     E+   G  P   TY L+
Sbjct: 482 YTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLI 520



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 116/238 (48%), Gaps = 19/238 (7%)

Query: 149 KGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           K ++ F ++M R+   EL+  T + + L+  L   G + +A+A F+ M      PD  +Y
Sbjct: 357 KAMYLF-EEMCRK---ELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY 412

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
            ++++ LC+    ++A  LL+ +E  G    PD+  YTI+I   C+ G            
Sbjct: 413 CILLDYLCKNRRLDEAIALLKAIE--GSNMDPDIQIYTIVIDGMCRAG-----------E 459

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           +  A  LF  +  KG  P+V  Y  +I+G C+   +  A +LF +M +KG  PN  TYN 
Sbjct: 460 LEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNL 519

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
             R +   NE  + I+++++M         S+S T ++  L + G     +  L+E +
Sbjct: 520 ITRGFLRNNETLRGIQLLQEMLARGFSADVSTS-TVLVEMLSDDGLDQSVKQILSEFL 576


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 128/292 (43%), Gaps = 66/292 (22%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+ L +   + +AL    +M      PDVY Y  VI+ALC     ++AR  LE+M  
Sbjct: 15  TSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMAN 74

Query: 233 PGFRCPPDVYTYTILISSYCKYG-------------------------MQTGCRKAIRRR 267
                 P+V TYT+LI   CK G                         + +G  KA   R
Sbjct: 75  RNL--TPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKA--ER 130

Query: 268 IWEANHLFRLMLF-----------------------------------KGFVPDVVAYNC 292
             EA  L   M++                                   +GF PDVV Y+C
Sbjct: 131 ASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSC 190

Query: 293 LIDGCCKTYRIERALELFDDMNKKG-CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
           LIDG CK  R++ A++LF  M K G C+PN VTYNS I  +  + ++D+A+ ++ +M   
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
               P   +YT +++  C+  R+ +A D L ++   G  P   T+  + D L
Sbjct: 251 GSS-PDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGL 301



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 136/311 (43%), Gaps = 74/311 (23%)

Query: 173 TCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           +CLI  L +EG + EA+  F RM K   C P+   YN +I+  CR+G  ++A  LLE+M 
Sbjct: 189 SCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMA 248

Query: 232 LPGFRCPPDVYTYTILISSYCKYG---------------------------MQTGCRKAI 264
             G    PDV TYT L++ +CK                             M   CR+  
Sbjct: 249 ETGS--SPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRE-- 304

Query: 265 RRRIWEANHLFRLM--------------LFKGFV-------------------PDVVAYN 291
             R+ +A H+   M              +  G+                    P+VV++N
Sbjct: 305 -NRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCPPNVVSFN 363

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +I G CK  R   A+EL ++  ++ C P+ V Y + I       ++D+A  + RKM   
Sbjct: 364 IMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEE 423

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA----E 407
              +P S +Y+ +I  LC AG +  AR +    ++ G VP   TY L+ DA   A    +
Sbjct: 424 PGCLPNSITYSTLITGLCNAGMLDRARGY----IEKGCVPNIGTYNLLIDAFRKANRDED 479

Query: 408 EPSLLDDGLRK 418
              LLDD +++
Sbjct: 480 ARELLDDMVQR 490



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 25/249 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   +   +D L  M+R+G    V T   T L+  L  E  +++A+     M++  C 
Sbjct: 266 FCKLARLDDAYDLLNQMTRKGLTPDVVT--FTSLMDGLCRENRLSDAVHILGEMRRKSCS 323

Query: 202 PDVYAYNVVINALCRVGNFNKAR-FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           P VY YN +++  CR     +AR F+LE+M+     CPP+V ++ I+I   CK       
Sbjct: 324 PTVYTYNTILDGYCRANQLEEARKFMLEEMD-----CPPNVVSFNIMIRGLCKVN----- 373

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM-NKKGCI 319
                 R  EA  L      +   PDVV Y  +IDG C+  +++ A  ++  M  + GC+
Sbjct: 374 ------RSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCL 427

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN +TY++ I        +D+A   + K       VP   +Y  +I A  +A R  +AR+
Sbjct: 428 PNSITYSTLITGLCNAGMLDRARGYIEK-----GCVPNIGTYNLLIDAFRKANRDEDARE 482

Query: 380 FLAELVDGG 388
            L ++V  G
Sbjct: 483 LLDDMVQRG 491



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 117/262 (44%), Gaps = 18/262 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +G  V      L  M ++     VT +S   LI  L +    +EA      M    C 
Sbjct: 91  LCKGGRVDEAVALLSKMRKKCVPTAVTYNS---LISGLCKAERASEAYDLLEEMVYSGCI 147

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD++ Y  +I   C+    + A  + EQ+   GFR  PDV TY+ LI   CK G      
Sbjct: 148 PDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR--PDVVTYSCLIDGLCKEG------ 199

Query: 262 KAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                R+ EA  LF  M+  G  +P+ V YN LI G C+  +++ A+ L + M + G  P
Sbjct: 200 -----RLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 254

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + VTY + +  +  +  +D A +++ +M       P   ++T ++  LC   R+ +A   
Sbjct: 255 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL-TPDVVTFTSLMDGLCRENRLSDAVHI 313

Query: 381 LAELVDGGSVPREYTYKLVCDA 402
           L E+      P  YTY  + D 
Sbjct: 314 LGEMRRKSCSPTVYTYNTILDG 335



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 15/204 (7%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C  D   Y  +I  LC+V    +A   L +M   GF   PDVYTYT +I + C       
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFH--PDVYTYTAVIHALC------- 57

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
               +  R+ EA      M  +   P+VV Y  LIDG CK  R++ A+ L   M KK C+
Sbjct: 58  ----VENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CV 112

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P  VTYNS I          +A +++ +M   +  +P   +YT +I   C++ +  +A  
Sbjct: 113 PTAVTYNSLISGLCKAERASEAYDLLEEMV-YSGCIPDIFTYTTLITGFCKSKKSDDALR 171

Query: 380 FLAELVDGGSVPREYTYKLVCDAL 403
              +LV  G  P   TY  + D L
Sbjct: 172 VFEQLVARGFRPDVVTYSCLIDGL 195



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 16/181 (8%)

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           C  D  TYT LI   CK            +R+ +A      M+ KGF PDV  Y  +I  
Sbjct: 7   CSADFVTYTSLIQGLCKV-----------KRLEQALIFLGKMVSKGFHPDVYTYTAVIHA 55

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            C   R+  A +  ++M  +   PN VTY   I        +D+A+ ++ KM+     VP
Sbjct: 56  LCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR--KKCVP 113

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
           T+ +Y  +I  LC+A R  EA D L E+V  G +P  +TY  +      +++    DD L
Sbjct: 114 TAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKS---DDAL 170

Query: 417 R 417
           R
Sbjct: 171 R 171


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 143/319 (44%), Gaps = 25/319 (7%)

Query: 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           G  +A E +        F  +      + + F RG N++        MS+      VT +
Sbjct: 209 GYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKE-----VTCA 263

Query: 171 ----SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
               S + LI  L E G + EA     +M +  C+P    Y V+I ALC  G  +KA  L
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNL 323

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
            ++M   G  C P+V+TYT+LI   C+ G           +I EAN + R M+     P 
Sbjct: 324 FDEMIPRG--CKPNVHTYTVLIDGLCRDG-----------KIEEANGVCRKMVKDRIFPS 370

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           V+ YN LI+G CK  R+  A EL   M K+ C PN  T+N  +     V +  KA+ +++
Sbjct: 371 VITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLK 430

Query: 347 KMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           +M  L++G+ P   SY  +I  LC  G +  A   L+ +      P   T+  + +A   
Sbjct: 431 RM--LDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCK 488

Query: 406 AEEPSLLDDGLRKRIRDGI 424
             +  +    L   +R GI
Sbjct: 489 QGKADVASAFLGLMLRKGI 507



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 34/242 (14%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L T  S+  ++ +L +   V E LA   ++ +    P V  Y  +++ L R G+   +  
Sbjct: 543 LTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFR 602

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           +LE M+L G  C P+VY YTI+I+  C++G           R+ EA  L   M   G  P
Sbjct: 603 ILELMKLSG--CLPNVYPYTIIINGLCQFG-----------RVEEAEKLLSAMQDSGVSP 649

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY------------S 333
           + V Y  ++ G     +++RALE    M ++G   N   Y+S ++ +            S
Sbjct: 650 NHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEES 709

Query: 334 VVNEI-------DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            V++I       +   E++  ++ L  G   S     ++  LC+ GR  E+ D +  +++
Sbjct: 710 TVSDIALRETDPECINELISVVEQL--GGCISGLCIFLVTRLCKEGRTDESNDLVQNVLE 767

Query: 387 GG 388
            G
Sbjct: 768 RG 769



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 111/288 (38%), Gaps = 36/288 (12%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG      S   LI  L  EG +N A      M  F   PD   +  +INA C+ G  + 
Sbjct: 435 NGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADV 494

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC----RKAIRRRIWEANHLFRL- 277
           A   L  M   G     D  T T LI   CK G            ++ RI    H   + 
Sbjct: 495 ASAFLGLMLRKGI--SLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVI 552

Query: 278 --MLFKG-----------------FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
             ML KG                  VP VV Y  L+DG  ++  I  +  + + M   GC
Sbjct: 553 LDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGC 612

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
           +PN   Y   I        +++A +++  MQ  + GV P   +YT ++      G++  A
Sbjct: 613 LPNVYPYTIIINGLCQFGRVEEAEKLLSAMQ--DSGVSPNHVTYTVMVKGYVNNGKLDRA 670

Query: 378 RDFLAELVDGGSVPREYTYK-------LVCDALNAAEEPSLLDDGLRK 418
            + +  +V+ G    +  Y        L    ++ +EE ++ D  LR+
Sbjct: 671 LETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSDIALRE 718



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 17/198 (8%)

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPDV 287
           +ME  GF     +  Y  ++++ CK G              EA  +F   + K GFV D 
Sbjct: 185 RMEADGF--VVGMIDYRTIVNALCKNGYT------------EAAEMFMSKILKIGFVLDS 230

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKK-GCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
                L+ G C+   +  AL++FD M+K+  C PN V+Y+  I     V  +++A  +  
Sbjct: 231 HIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKD 290

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           +M       P++ +YT +I ALC+ G + +A +   E++  G  P  +TY ++ D L   
Sbjct: 291 QMGE-KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRD 349

Query: 407 EEPSLLDDGLRKRIRDGI 424
            +    +   RK ++D I
Sbjct: 350 GKIEEANGVCRKMVKDRI 367


>gi|399216092|emb|CCF72780.1| unnamed protein product [Babesia microti strain RI]
          Length = 1520

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 132/284 (46%), Gaps = 16/284 (5%)

Query: 118  FYHWVE--RFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCL 175
            F+ W E    + +  NE+T   M       N +      LKDM +  N +   T   + L
Sbjct: 962  FHLWNEMTSLYGYELNEVTYGCMFDALVSNNMLDEALSLLKDMKKNSNIK-PNTIIYSTL 1020

Query: 176  IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
            IK  G+   +N+AL  +  M      P+   YN +I+A  RVG+ NKA  LLE M     
Sbjct: 1021 IKGFGQTKQLNKALNIYLTMLDEGVVPNTITYNSIIDACARVGDMNKAANLLEDM--LNN 1078

Query: 236  RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
               PD+ T++ +I  YC   +Q+   ++++        L R M  +G  PD + YN L+D
Sbjct: 1079 NIEPDLITFSTVIKGYC---VQSNMDRSLQ--------LLRAMSERGIKPDGILYNSLLD 1127

Query: 296  GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
            GC K+ R     +L+D+M + G  P+  T    I+ Y  + ++DKA ++M ++    +  
Sbjct: 1128 GCVKSGRPWLCQQLWDEMQENGIAPSNFTLTILIKMYGRLGQLDKAFQLMDELPRKYNIQ 1187

Query: 356  PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
              +  YT ++ A    G+   A D    +   G VP   TY+ +
Sbjct: 1188 TNTHVYTCLMSACITNGKYKMALDVFNCMNGNGIVPDSKTYETI 1231



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 28/225 (12%)

Query: 209  VVINALCRVGN----FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             +I+A+C+V N     N+ + LL   +L  +    D Y+            +   C    
Sbjct: 873  AMISAICQVLNNTCCINQLQQLLMMTDLLQYHMSNDFYS-----------AILDACI--- 918

Query: 265  RRRIWEANHLFR-LMLFK--GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK-KGCIP 320
              RI   +HL   +  +K  GF PD+  Y  LI     +  +     L+++M    G   
Sbjct: 919  --RINSPDHLLESVNKYKKFGFHPDLQTYGLLIKFFSSSDNVMECFHLWNEMTSLYGYEL 976

Query: 321  NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
            N VTY          N +D+A+ +++ M+  ++  P +  Y+ +I    +  ++ +A + 
Sbjct: 977  NEVTYGCMFDALVSNNMLDEALSLLKDMKKNSNIKPNTIIYSTLIKGFGQTKQLNKALNI 1036

Query: 381  LAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRKRIR 421
               ++D G VP   TY  + DA     +  +  +LL+D L   I 
Sbjct: 1037 YLTMLDEGVVPNTITYNSIIDACARVGDMNKAANLLEDMLNNNIE 1081


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 98/188 (52%), Gaps = 16/188 (8%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+   YN+ I  LC+ G  + AR     + L GF   PD +TY  LI  Y   G      
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGF--VPDNFTYCTLIHGYSAAG------ 763

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + EA  L   ML +G VP++V YN LI+G CK+  ++RA  LF  +++KG  PN
Sbjct: 764 -----NVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPN 818

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            VTYN+ I  Y  +  +D A ++  KM  +  G+ P+  +Y+ +I+ LC+ G +  +   
Sbjct: 819 VVTYNTLIDGYCKIGNMDAAFKLKDKM--IEEGISPSVVTYSALINGLCKHGDIERSMKL 876

Query: 381 LAELVDGG 388
           L +++  G
Sbjct: 877 LNQMIKAG 884



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 13/232 (5%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           V+ ++    ++G V+EA     +M+     P++  Y+ +IN    +G+   A+ +L+ M 
Sbjct: 229 VSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMS 288

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G     +V TYT+LI  YCK        K +R    EA            VPD  AY 
Sbjct: 289 EKGV--SRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEA----------ALVPDERAYG 336

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            LIDG C+T +I+ A+ L D+M + G   N    NS I  Y    EI +A  ++ +M + 
Sbjct: 337 VLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDW 396

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           N   P S SY  ++   C  G   EA +   +++  G  P   TY  +   L
Sbjct: 397 NLK-PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGL 447



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 33/287 (11%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
           + R   +      L +M R G    + T+   C  LI    + G ++EA     RM  + 
Sbjct: 342 YCRTGKIDDAVRLLDEMLRLG----LKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWN 397

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG---- 255
            +PD Y+YN +++  CR G+ ++A  L ++M   G    P V TY  L+   C+ G    
Sbjct: 398 LKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE--PTVLTYNTLLKGLCRVGAFDD 455

Query: 256 --------MQTGCR-----------KAIRRRIWE-ANHLFRLMLFKGFVPDVVAYNCLID 295
                   M+ G                +   +E A+ L++ +L +GF    + +N +I 
Sbjct: 456 ALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMIS 515

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G CK  ++  A E+FD M   GC P+ +TY + I  Y   + + +A ++   M+      
Sbjct: 516 GLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMER-EPIS 574

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           P+   Y  +I  L ++ R++E  D L E+   G  P   TY  + D 
Sbjct: 575 PSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDG 621



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 126/310 (40%), Gaps = 61/310 (19%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           N +G     KD+  RG     T S +T   +I  L + G + EA   F +MK   C PD 
Sbjct: 487 NFEGASTLWKDILARG----FTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDG 542

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCP--PDVYTYTILISSYCKYGMQTGCRK 262
             Y  +I+  C+  N  +A  +   ME    R P  P +  Y  LIS   K         
Sbjct: 543 ITYRTLIDGYCKASNVGQAFKVKGAME----REPISPSIEMYNSLISGLFK--------- 589

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
              RR+ E   L   M  +G  P++V Y  LIDG CK   +++A   + +M + G   N 
Sbjct: 590 --SRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANI 647

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG---------------------------- 354
           +  ++ +     +  ID+A  +M+KM  ++HG                            
Sbjct: 648 IICSTMVSGLYRLGRIDEANLLMQKM--VDHGFFPDHECFLKSDIRYAAIQKIADSLDES 705

Query: 355 -----VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
                +P +  Y   I  LC+ G+V +AR F + L   G VP  +TY   C  ++     
Sbjct: 706 CKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTY---CTLIHGYSAA 762

Query: 410 SLLDDGLRKR 419
             +D+  R R
Sbjct: 763 GNVDEAFRLR 772



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 21/246 (8%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           RGN +   WD L  + R    E   + +V   ++KV  E+GL   AL  F  M +    P
Sbjct: 137 RGNVI---WDELVGVYR----EFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIP 189

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
            + + N ++N L + G  + A ++ +QM   G    PDV+  +I+++++CK G       
Sbjct: 190 SLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGI--VPDVFMVSIMVNAFCKDG------- 240

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               ++ EA    + M   G  P++V Y+ LI+G      +E A  +   M++KG   N 
Sbjct: 241 ----KVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNV 296

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           VTY   I+ Y    ++D+A +++R MQ     VP   +Y  +I   C  G++ +A   L 
Sbjct: 297 VTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLD 356

Query: 383 ELVDGG 388
           E++  G
Sbjct: 357 EMLRLG 362



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 125/291 (42%), Gaps = 50/291 (17%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR-PDVY 205
           +V+     LK MS +G    V T   T LIK   ++  ++EA      M++     PD  
Sbjct: 276 DVEAAKGVLKFMSEKGVSRNVVT--YTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDER 333

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           AY V+I+  CR G  + A  LL++M   G +   +++    LI+ YCK G          
Sbjct: 334 AYGVLIDGYCRTGKIDDAVRLLDEMLRLGLK--TNLFICNSLINGYCKRG---------- 381

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             I EA  +   M+     PD  +YN L+DG C+      A  L D M ++G  P  +TY
Sbjct: 382 -EIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTY 440

Query: 326 NSFIRYYSVVNEIDKAIE----MMR------------------KMQN-----------LN 352
           N+ ++    V   D A++    MM+                  KM+N           L 
Sbjct: 441 NTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILA 500

Query: 353 HGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            G   S  ++  +I  LC+ G+++EA +   ++ D G  P   TY+ + D 
Sbjct: 501 RGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDG 551



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 17/179 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI      G V+EA      M +    P++  YN +IN LC+  N ++A+ L  ++   G
Sbjct: 755 LIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKG 814

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V TY  LI  YCK G      K   + I E           G  P VV Y+ LI
Sbjct: 815 LF--PNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEE-----------GISPSVVTYSALI 861

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +G CK   IER+++L + M K G     + Y + ++ Y    E+ K    + K+ ++ H
Sbjct: 862 NGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQK----IHKLYDMMH 916



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 32/202 (15%)

Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
           KQ   RP+V +Y  +++ L R   +++ R  L Q+                     CK+ 
Sbjct: 94  KQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQL------------------VDLCKF- 134

Query: 256 MQTGCRKAIRRRIW-EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                 K     IW E   ++R   F   V D++    +  G  K      AL +FD+M 
Sbjct: 135 ------KDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKN-----ALYVFDNMG 183

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           K G IP+  + NS +       E   A  + ++M  +   VP     + +++A C+ G+V
Sbjct: 184 KCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGI-VPDVFMVSIMVNAFCKDGKV 242

Query: 375 LEARDFLAELVDGGSVPREYTY 396
            EA  F+ ++ + G  P   TY
Sbjct: 243 DEAAGFVKKMENLGVEPNIVTY 264


>gi|255660922|gb|ACU25630.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 484

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 135/280 (48%), Gaps = 18/280 (6%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G            
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLE--WDXDMWVL 85

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I   G+ G+V E++  F +M++      + +Y+ +   + R G +  A+    +M   G
Sbjct: 86  MIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEG 145

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P  +T+ ++I  +   G           ++  AN  F  M  +   PDV+ YN +I
Sbjct: 146 IE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVITYNTMI 192

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G  +  ++E A + F +M  K   PN VTY + I+ Y  V+++D A+ ++ +M+   +G
Sbjct: 193 NGYYRVKKMEEAEKYFVEMKGKNIEPNVVTYTTLIKGYVSVDQVDDALRLVEEMK--GYG 250

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           + P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARSILKEMLDKYIAPTD 290



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 25/214 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA   F  MK     P+V  Y  +I     V   + A  L+E+M+  G+   P+  TY
Sbjct: 201 MEEAEKYFVEMKGKNIEPNVVTYTTLIKGYVSVDQVDDALRLVEEMK--GYGIKPNAITY 258

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRI 303
           + L+   C              ++ EA  + + ML K   P D   +  LI   CK   +
Sbjct: 259 STLLPGLCN-----------AEKMSEARSILKEMLDKYIAPTDNSIFMRLISSQCKAGNL 307

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM---------QNLNHG 354
           + A ++   M +         Y   I  Y    + D+A++++ K+         Q+  H 
Sbjct: 308 DAAADVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLIEKDIILRPQSTLHM 367

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            P  S+Y  +I  LC  G+  +A   + +L+  G
Sbjct: 368 EP--SAYNXMIEYLCNNGQXAKAETLVRQLLKLG 399


>gi|356575965|ref|XP_003556106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g60050-like isoform 1 [Glycine max]
 gi|356575967|ref|XP_003556107.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g60050-like isoform 2 [Glycine max]
          Length = 480

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 139/332 (41%), Gaps = 37/332 (11%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ W  +   + H       +  ++A     K LW  + +M  +G     T  +   
Sbjct: 139 AYKFFVWCSQQEGYQHTVNAYHLVMSIYAECEEFKALWRLVDEMIEKGLP--ATARTFNI 196

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+  GE GL    +  F + K F  RP  ++YN +++ L  +  +    ++ +QM L G
Sbjct: 197 LIRTCGEAGLAKNLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQMLLDG 256

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN--------HLFRLMLF------ 280
           F  P D+ TY I++  Y KY  + G      R + E          H F ++L       
Sbjct: 257 F--PSDILTYNIVM--YAKY--RLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHVLGKGD 310

Query: 281 --------------KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
                          G  P V+ +  LIDG  +   ++     FD+M K  C P+ V Y 
Sbjct: 311 KPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNECRPDVVAYT 370

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             I  Y V  EI+KA+EM + M +    VP   +Y  II  LC AG+  EA   L E+  
Sbjct: 371 VMITGYVVAGEIEKALEMYQDMISREQ-VPNVFTYNSIIRGLCMAGKFDEACSMLKEMET 429

Query: 387 GGSVPREYTYKLVCDALNAAEEPSLLDDGLRK 418
            G  P    Y  +   L  A + +   + +R+
Sbjct: 430 KGCSPNSVVYNTLASCLRNAGKTADAHEVIRQ 461


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 120/288 (41%), Gaps = 54/288 (18%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
            V GL   ++ +  R N       + T  I++LG  G ++EA     RM    C PDV  
Sbjct: 245 TVMGLLQEMESLGLRPN-----IYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVT 299

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           Y V+I+ALC  G  N A+ L  +M+    +  PD  TY  L+  +  +G     ++    
Sbjct: 300 YTVLIDALCNAGKLNNAKELFLKMKASSHK--PDRVTYITLLDKFSDHGDLDAIKE---- 353

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
             W        M   G++PDVV +  LID  CK  +++ A    D M K+G  PN  TYN
Sbjct: 354 -FWSE------MEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYN 406

Query: 327 S-----------------------------------FIRYYSVVNEIDKAIEMMRKMQNL 351
           +                                   FI YY    E  KAI+   KM+  
Sbjct: 407 TLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKT- 465

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           N  VP   +    +++L E GR+ EA++F   L   G  P   TY ++
Sbjct: 466 NGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNIL 513



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 116/249 (46%), Gaps = 19/249 (7%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            LI  L +  L   A   FY+MK   C PDV+ YN+ ++AL + G   +   L E+M   G
Sbjct: 794  LIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRG 853

Query: 235  FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
              C P+  T+ I+I    K        KAI         L+  ++   F P    Y  LI
Sbjct: 854  --CKPNTITHNIVIFGLVK---SNSLDKAI--------DLYYDLMSGDFSPTPWTYGPLI 900

Query: 295  DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            DG  K  R+E A + F++M   GC+PN   YN  +  +    +++ A E+ R+M  +  G
Sbjct: 901  DGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRM--VKEG 958

Query: 355  V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA---EEPS 410
            + P   SY+ ++  LC  G+V +A  +  EL   G  P    Y L+ + L  +   EE  
Sbjct: 959  IRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEAL 1018

Query: 411  LLDDGLRKR 419
             L D +R R
Sbjct: 1019 SLFDEMRNR 1027



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 116/244 (47%), Gaps = 15/244 (6%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G ++   S   LI +L + G   EAL  + RM     +P +  Y+ ++ AL +  + 
Sbjct: 184 RKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDI 243

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
                LL++ME  G R  P++YT+TI I    + G           +I EA  + + M  
Sbjct: 244 ETVMGLLQEMESLGLR--PNIYTFTICIRILGRAG-----------KIDEAYGILKRMDD 290

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  PDVV Y  LID  C   ++  A ELF  M      P+RVTY + +  +S   ++D 
Sbjct: 291 AGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDA 350

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK-LV 399
             E   +M+   + +P   ++T +I ALC+ G+V EA   L  +   G  P  +TY  L+
Sbjct: 351 IKEFWSEMEADGY-LPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLI 409

Query: 400 CDAL 403
           C  L
Sbjct: 410 CGLL 413



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 106/222 (47%), Gaps = 14/222 (6%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            LI  L + G + EA   F  M  + C P+   YN+++N   + G+   A  L  +M   G
Sbjct: 899  LIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEG 958

Query: 235  FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             R  PD+ +Y+I++   C  G           ++ +A H F  +   G  PD+V YN +I
Sbjct: 959  IR--PDLKSYSIMVDCLCMVG-----------KVDDALHYFEELKLSGLDPDLVCYNLMI 1005

Query: 295  DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            +G  ++ R+E AL LFD+M  +G  P+  TYN+ I    +   +++A +M  ++Q L   
Sbjct: 1006 NGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQ-LKGL 1064

Query: 355  VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             P   +Y  +I     +G    A     +++ GG  P   T+
Sbjct: 1065 EPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTF 1106



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 119/263 (45%), Gaps = 16/263 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F+   ++  + +F  +M    +G L    + T LI  L + G V+EA  T   MK+    
Sbjct: 342 FSDHGDLDAIKEFWSEM--EADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVA 399

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+++ YN +I  L R+   ++A  L   ME  G       YTY + I  Y K G ++G  
Sbjct: 400 PNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETT--AYTYILFIDYYGKSG-ESG-- 454

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
           KAI+         F  M   G VP++VA N  +    +  R+E A E F+ + K G  P+
Sbjct: 455 KAIKT--------FEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPD 506

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            +TYN  +R Y     +D AI+++ +M+  N   P       +I  L +A RV EA    
Sbjct: 507 AITYNILMRCYGKAGRVDDAIKLLSEMEE-NGCDPEVVIINSLIDTLYKADRVDEAWKMF 565

Query: 382 AELVDGGSVPREYTYKLVCDALN 404
             + +    P   TY  +   L 
Sbjct: 566 QRMKEMKLAPTVVTYNTLLAGLG 588



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 14/196 (7%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L E+G + EA   F  +K+    PD   YN+++    + G  + A  LL +ME  G  C 
Sbjct: 482 LAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENG--CD 539

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P+V     LI +  K             R+ EA  +F+ M      P VV YN L+ G  
Sbjct: 540 PEVVIINSLIDTLYK-----------ADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLG 588

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K  R++ A  LF  M    C PN +++N+ +       E+D A++M+ +M  +N   P  
Sbjct: 589 KEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNC-FPDV 647

Query: 359 SSYTPIIHALCEAGRV 374
            +Y  +I+ L +  RV
Sbjct: 648 LTYNTVIYGLIKENRV 663



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 264 IRRRIWE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
           ++ R+ E A  LF  M   G  PDV  YN  +D   K+ +I+   +L+++M  +GC PN 
Sbjct: 799 LKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNT 858

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           +T+N  I      N +DKAI++   + + +   PT  +Y P+I  L + GR+ EA+ F  
Sbjct: 859 ITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFS-PTPWTYGPLIDGLLKLGRLEEAKQFFE 917

Query: 383 ELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           E++D G +P    Y ++ +      +     +  R+ +++GI
Sbjct: 918 EMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGI 959



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 102/211 (48%), Gaps = 15/211 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L++  G+ G V++A+     M++  C P+V   N +I+ L +    ++A  + ++M+   
Sbjct: 513 LMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMK--E 570

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P V TY  L++   K G           R+ EA  LF+ M+     P+ +++N L+
Sbjct: 571 MKLAPTVVTYNTLLAGLGKEG-----------RVQEATALFKGMIADDCPPNTISFNTLL 619

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK   ++ AL++   M +  C P+ +TYN+ I      N ++ A  +  +M+ + + 
Sbjct: 620 DCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKVIY- 678

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            P   +   ++  + + GR+ +A     E V
Sbjct: 679 -PDYVTLCTLLPGVIKDGRIEDAFRVAKEFV 708



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 15/184 (8%)

Query: 142  FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
            F +  +V+   +  + M + G    + + S+  ++  L   G V++AL  F  +K     
Sbjct: 938  FGKQGDVETACELFRRMVKEGIRPDLKSYSI--MVDCLCMVGKVDDALHYFEELKLSGLD 995

Query: 202  PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            PD+  YN++IN L R     +A  L ++M   G    PD+YTY  LI +    GM     
Sbjct: 996  PDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGI--TPDLYTYNALILNLGIAGM----- 1048

Query: 262  KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                  + EA  ++  +  KG  P+V  YN LI G   +   +RA  ++  M   GC PN
Sbjct: 1049 ------VEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPN 1102

Query: 322  RVTY 325
              T+
Sbjct: 1103 TGTF 1106


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  ++R ML +  +PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 102/201 (50%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHNFCKGGEIXLAQSVFDSITKWGLR--PSVVSFNTLMNGYIKIG-------- 185

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L  +M   G  PDV  Y+ LI+G CK  +++ A  LFD+M   G +PN V
Sbjct: 186 ---DLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGV 242

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ R+M  Q+L   +P   +Y  +I+ LC+ G + +A+D +
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYRQMLSQSL---LPDLITYNTLIYGLCKKGDLKQAQDLI 299

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+   G  P + TY  + D 
Sbjct: 300 DEMSMKGLKPDKITYTTLIDG 320



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 36/214 (16%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG +    + T LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANALFDEMLD-----NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK--PDKITYTTLIDGNCKE 324

Query: 255 G-MQTG-------CRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAY 290
           G ++T         ++ IR                 R  +A  + R ML  G  P++  Y
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             +I+  CK   +    +L  +M + G +PN VT
Sbjct: 385 TMIINEFCKKGDVWTGSKLLKEMQRDGYLPNVVT 418



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 40/215 (18%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           R D+Y ++ +I A    G    A       +   FR P D                   C
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDT------------------C 104

Query: 261 RKAIRRRIWEANHLFRLMLFK------------GFVPDVVAYNCLIDGCCKTYRIERALE 308
           RK I        HL +L  FK            G+   +  +N L+   CK   I  A  
Sbjct: 105 RKVIE-------HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKGGEIXLAQS 157

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
           +FD + K G  P+ V++N+ +  Y  + ++D+   +   MQ    GV P   +Y+ +I+ 
Sbjct: 158 VFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ--ASGVQPDVYTYSVLING 215

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           LC+  ++ +A     E++D G VP   T+  + D 
Sbjct: 216 LCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDG 250


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 106/199 (53%), Gaps = 14/199 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 190 QPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGL--VPNGVTFTTLIDGHCKNG----- 242

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +  +PD++ YN LI G CK   +++A +L D+M+ KG  P
Sbjct: 243 ------RVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKP 296

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           ++ TY + I       ++D A E  ++M   N  +    +YT +I  LC+ GR ++A   
Sbjct: 297 DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD-DVAYTALISGLCQEGRSVDAEKM 355

Query: 381 LAELVDGGSVPREYTYKLV 399
           L E++  G  P   TY ++
Sbjct: 356 LREMLSVGLKPDTGTYTMI 374



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 106/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 123 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 172

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A  LFD+M  KG +P
Sbjct: 173 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVP 226

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A 
Sbjct: 227 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL---LPDLITYNTLIYGLCKKGDLKQAH 283

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P ++TY  + D 
Sbjct: 284 DLIDEMSMKGLKPDKFTYTTLIDG 307



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 26/234 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ +   GL+D +       NG   TT     LI    + G V+ A+  + +
Sbjct: 204 CKE-----SKMDGANGLFDEMLVKGLVPNGVTFTT-----LIDGHCKNGRVDLAMEIYKQ 253

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A  L+++M + G +  PD +TYT LI   CK 
Sbjct: 254 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK--PDKFTYTTLIDGCCKE 311

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G + T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 312 GDLDTAFEH--RKRMIQEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 359

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
              G  P+  TY   +  +    ++ K  +++++MQ   H  P+  +Y  +++ 
Sbjct: 360 LSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHA-PSVVTYNVLMNG 412


>gi|255660872|gb|ACU25605.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 484

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELXVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVZEMKGX-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVJLKEMMDKYLAPTD 290



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK------- 262
           +I  L R    N AR +L  M   G     D++   ++I SY K G+     K       
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKEGIVQESVKMFQKMEE 108

Query: 263 -AIRRRIWEANHLFRL----------------MLFKGFVPDVVAYNCLIDGCCKTYRIER 305
             + R I   N LF++                ML +G  P    +N +I G   + ++E 
Sbjct: 109 LXVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVZEMKGXGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 90/254 (35%), Gaps = 66/254 (25%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G V  A   F  MK     PDV  YN +IN   RV    +A      +E+ G    P V 
Sbjct: 164 GKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYF--VEMKGRNIEPTVV 221

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TYT LI  Y               ++ +A  L   M   G  P+ + Y+ L+ G C   +
Sbjct: 222 TYTTLIKGYVSVD-----------QVDDALRLVZEMKGXGIKPNAITYSTLLPGLCNAEK 270

Query: 303 IERALELFDDMNKKGCIPNRVTYNS----------------------------------- 327
           +  A  J  +M  K   P   T NS                                   
Sbjct: 271 MSEARVJLKEMMDKYLAP---TDNSIFMRLIXSHCKSGNLDAAADVLKAMIRLSVPTEAG 327

Query: 328 ----FIRYYSVVNEIDKAIEMMRKM---------QNLNHGVPTSSSYTPIIHALCEAGRV 374
                I  +  V + DKA++++ K+         Q+  H  P  S+Y P+I  LC  G+ 
Sbjct: 328 HXGXLIENFCKVGQYDKAVKLLDKLIEKDIILRPQSTLHLEP--SAYNPMIEYLCNNGQA 385

Query: 375 LEARDFLAELVDGG 388
            +A   + +L   G
Sbjct: 386 XKAETLVRQLXKLG 399


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G +NE       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M  KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++   + G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHGFVKEGEIRLAQSVFDAITKWGLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + N  FRL   M   G  PDV  Y+ LI+G CK  +++ A  LFD+M  KG +P
Sbjct: 186 ------DLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E++  G  P + TY  + D 
Sbjct: 297 DLIDEMIMKGLKPDKITYTTLIDG 320



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG   TT     LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANVLFDEMLDKGLVPNGVTFTT-----LIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK--PDKITYTTLIDGNCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 122/254 (48%), Gaps = 18/254 (7%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           NV+  +     M  RG    + T   T LIK     G + EAL  +  M Q  C P+V A
Sbjct: 294 NVELAFALFAQMFLRGCDANIHT--FTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVA 351

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN +I+ LC  G+  +A  + +QM+  G  C P+V TY+ILI  + K G   G  +   R
Sbjct: 352 YNTLIHGLCSNGSLEEALQVCDQMQRSG--CLPNVTTYSILIDGFAKSGDLVGASETWNR 409

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
                      M+  G  P+VV Y C++D  CK    ++A  L + M  +GC PN +T+N
Sbjct: 410 -----------MISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFN 458

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           +FI+       ++ A++++ +MQ   HG +P  ++Y  ++ AL    +  EA     E+ 
Sbjct: 459 TFIKGLCGNGRVEWAMKLLERMQ--GHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIE 516

Query: 386 DGGSVPREYTYKLV 399
                P   TY  V
Sbjct: 517 ARNLQPNLVTYNTV 530



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 16/223 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  + +EG +  A+     M      P+V +Y+ +IN+LC  GN   A  L  QM L G
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C  +++T+T LI          GC   +R +++EA  L++LM+  G  P+VVAYN LI
Sbjct: 310 --CDANIHTFTPLIK---------GC--FMRGKLYEALDLWKLMIQDGCEPNVVAYNTLI 356

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C    +E AL++ D M + GC+PN  TY+  I  ++   ++  A E   +M  ++HG
Sbjct: 357 HGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRM--ISHG 414

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             P   +YT ++  LC+     +A   + ++   G  P   T+
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTF 457



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 129/289 (44%), Gaps = 32/289 (11%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M R G    VTT S+  LI    + G +  A  T+ RM    CRP+V  Y  +++ LC+ 
Sbjct: 375 MQRSGCLPNVTTYSI--LIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKN 432

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-----------MQT-GCRKAIR 265
             F++A  L+E+M L G  C P+  T+   I   C  G           MQ  GC   I 
Sbjct: 433 SMFDQANSLVEKMTLEG--CTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNIT 490

Query: 266 ------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        +  EA  LF+ +  +   P++V YN ++ G  +   +  AL+LF   
Sbjct: 491 TYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKA 550

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
             +G  P+ +TYN+ I  Y    ++  A +++ ++ ++    P   +YT +I   C    
Sbjct: 551 LVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMN 610

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVC----DALNAAEEPSLLDDGLRK 418
           + EA  FL + ++ G  P   T+  +     D+L       +LDD LRK
Sbjct: 611 IEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDILRK 659



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 111/275 (40%), Gaps = 56/275 (20%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRP------------------------------- 202
           C+I      G   +AL  FYR+ +F C+P                               
Sbjct: 114 CIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKD 173

Query: 203 ----DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
               +V+ YN+++ ALC+    + A  L  +M   G  CPPD  TYT ++SS CK G   
Sbjct: 174 GLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKG--CPPDAVTYTTMVSSLCKAGKID 231

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
             R+   R                F P V  YN LIDG CK  RIE A++L  +M   G 
Sbjct: 232 DARELAGR----------------FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV 275

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            PN V+Y+  I    V   ++ A  +  +M  L        ++TP+I      G++ EA 
Sbjct: 276 DPNVVSYSCIINSLCVSGNVELAFALFAQMF-LRGCDANIHTFTPLIKGCFMRGKLYEAL 334

Query: 379 DFLAELVDGGSVPREYTYKLVCDAL--NAAEEPSL 411
           D    ++  G  P    Y  +   L  N + E +L
Sbjct: 335 DLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEAL 369



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 105/230 (45%), Gaps = 21/230 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+K L +   V+ A   F  M    C PD   Y  ++++LC+ G  + AR      EL G
Sbjct: 185 LLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAR------ELAG 238

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R  P V  Y  LI   CK G           RI  A  L   M+  G  P+VV+Y+C+I
Sbjct: 239 -RFKPSVPVYNALIDGMCKEG-----------RIEVAIKLLGEMMDNGVDPNVVSYSCII 286

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +  C +  +E A  LF  M  +GC  N  T+   I+   +  ++ +A+++ + M  +  G
Sbjct: 287 NSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLM--IQDG 344

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P   +Y  +IH LC  G + EA     ++   G +P   TY ++ D  
Sbjct: 345 CEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGF 394



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 32/222 (14%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM--------- 256
            Y V+I  L R    +  +++L+QM++ G  C  D++    +I+ Y + G          
Sbjct: 76  TYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFI--CIINGYKRVGSAEQALKMFY 133

Query: 257 ---QTGCRKAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
              + GC+  +R             +    N L+  M   G +P+V  YN L+   CK  
Sbjct: 134 RIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKND 193

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
           R++ A +LF +M+ KGC P+ VTY + +       +ID A E+  + +      P+   Y
Sbjct: 194 RVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK------PSVPVY 247

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +I  +C+ GR+  A   L E++D G  P   +Y  + ++L
Sbjct: 248 NALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSL 289


>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
 gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 135/289 (46%), Gaps = 18/289 (6%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A  F+ W E+   + H+      +    A+    + +WD +K M  +    +V   +   
Sbjct: 39  AYRFFEWAEKQRHYNHSVKAFHTVIDSLAKIRQYQLMWDVVKVMKSK---RMVNVETFCI 95

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++       V EA+ TF  M ++   P++ A+N +++ALC+  N  KA+ + + ++   
Sbjct: 96  IMRKYARAQKVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIK--- 152

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R  PD  TY+IL+  + K              + +A  +FR M+  G  PD+V Y  ++
Sbjct: 153 DRFVPDSKTYSILLEGWGK-----------DPNLPKAREIFREMVSNGCRPDIVTYGIMV 201

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK  R++ AL + ++M+   C P    Y+  +  Y + N I+ A+    +M+N N  
Sbjct: 202 DVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEMEN-NGI 260

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P  + Y  +I A C+A R+      L E+   G  P   T+ ++  +L
Sbjct: 261 EPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSL 309



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 128/270 (47%), Gaps = 21/270 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           + + + L++  G++  + +A   F  M    CRPD+  Y ++++ LC+ G  ++A  ++ 
Sbjct: 159 SKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVN 218

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M+     C P  + Y++L+ +Y            I  RI +A   F  M   G  PDV 
Sbjct: 219 EMD--STVCKPTPFIYSVLVHTY-----------GIENRIEDAVSTFLEMENNGIEPDVA 265

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN LI   CK  R++    + ++M+ KG  PN  T+N  +       E D+A  +  +M
Sbjct: 266 VYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRM 325

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALN 404
             +    P + +YT +I   CE   + +A      +     +P  +T+++    +C+  +
Sbjct: 326 IKVCE--PDADTYTMMIKMFCERDELKKALKVWKYMKLKRFMPSMHTFQVLINGLCEKGD 383

Query: 405 AAEEPSLLDDGLRKRIR-DGIEY-RFRQVM 432
             +   LL++ + K IR  G+ + R RQ++
Sbjct: 384 VTQACVLLEEMIEKGIRPSGVTFGRLRQLL 413


>gi|358348674|ref|XP_003638369.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355504304|gb|AES85507.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 501

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 134/332 (40%), Gaps = 45/332 (13%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ W  +  D+ H       +  ++A     K LW  + +M   G G   T  +   
Sbjct: 144 AYKFFVWCGQQEDYRHTANAYHLIMNIYAECKEFKALWRLVDEMI--GKGYKATARTFNI 201

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRP-------------------------------- 202
           LI+  GE GL    +  F + K F  RP                                
Sbjct: 202 LIRTCGEAGLAKTLVERFIKSKSFNYRPFKHSYNAILHSFLVLNQYKLIEWVYEQMLLDG 261

Query: 203 ----DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
               D+  YN+VI A  R+G  ++   LL +M+  GF   PD +TY IL+ +  K  +  
Sbjct: 262 GFSSDILTYNIVIYAKYRLGKVDQVLTLLGEMDRNGF--SPDFHTYNILLHAISKGDIGK 319

Query: 259 GCRK----AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G          +  ++A  L   M   G  P V+ +  LIDG  +  +++     F++M 
Sbjct: 320 GDLDKEDLGKEKEQFKALKLLNYMRETGIEPTVLHFTTLIDGFSRAGKLDACQYFFNEMK 379

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           K GC+P+ V Y   I  Y V  E++KA EM  +M +    VP   +Y  +I  LC AG+ 
Sbjct: 380 KNGCMPDVVAYTVMITGYVVARELEKAQEMFEEMLS-KELVPNVFTYNSMIRGLCMAGKF 438

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            EA     E+   G  P    Y  +   L  A
Sbjct: 439 DEACSMFKEMERKGCSPNSVVYITLVSCLRNA 470



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 4/142 (2%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F+R   +     F  +M + G    V   +V     V+  E  + +A   F  M      
Sbjct: 362 FSRAGKLDACQYFFNEMKKNGCMPDVVAYTVMITGYVVARE--LEKAQEMFEEMLSKELV 419

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+V+ YN +I  LC  G F++A  + ++ME  G  C P+   Y  L+S     G     R
Sbjct: 420 PNVFTYNSMIRGLCMAGKFDEACSMFKEMERKG--CSPNSVVYITLVSCLRNAGRVADAR 477

Query: 262 KAIRRRIWEANHLFRLMLFKGF 283
           + I++      +   L  FKG+
Sbjct: 478 EVIKQMTETGKYAHLLSRFKGY 499



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 5/142 (3%)

Query: 270 EANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           E   L+RL   M+ KG+      +N LI  C +    +  +E F         P + +YN
Sbjct: 176 EFKALWRLVDEMIGKGYKATARTFNILIRTCGEAGLAKTLVERFIKSKSFNYRPFKHSYN 235

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELV 385
           + +  + V+N+  K IE + +   L+ G  +   +Y  +I+A    G+V +    L E+ 
Sbjct: 236 AILHSFLVLNQY-KLIEWVYEQMLLDGGFSSDILTYNIVIYAKYRLGKVDQVLTLLGEMD 294

Query: 386 DGGSVPREYTYKLVCDALNAAE 407
             G  P  +TY ++  A++  +
Sbjct: 295 RNGFSPDFHTYNILLHAISKGD 316


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G +NE       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M  KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWGLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + N  FRL   M   G  PDV  Y+ LI+G CK  +++ A  LFD+M  KG +P
Sbjct: 186 ------DLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E++  G  P + TY  + D 
Sbjct: 297 DLIDEMIMKGLKPDKITYTTLIDG 320



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG   TT     LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANVLFDEMLDKGLVPNGVTFTT-----LIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK--PDKITYTTLIDGNCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 107/236 (45%), Gaps = 27/236 (11%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
             A F  M++    P++Y YN +I   CR G F  AR L ++M + G     +V +Y IL
Sbjct: 92  GFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGV--VHNVVSYNIL 149

Query: 248 ISSYCKYG--------MQTGCRKAIRRRIWEAN----------------HLFRLMLFKGF 283
           I+  C++          +   R+ IR  I   N                H F  M   G 
Sbjct: 150 IAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGL 209

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P VV YN LI G C+   I RA+  F DM ++G  P +VTY   I  ++  NE+D+A  
Sbjct: 210 PPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFM 269

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           M+ +M+     V    SY  ++HALC  G+++ AR     +   G  P    Y ++
Sbjct: 270 MLSEMEKAGLEVDV-QSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMM 324



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 115/262 (43%), Gaps = 17/262 (6%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           V+     L   ++ G+  L   ++ T L+ V  + G V EA   F  M +    P+   Y
Sbjct: 18  VRSALAVLARGTKSGDAAL-DVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTY 76

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
             +IN     G+      L  +M   G    P++YTY  LI  +C+ G            
Sbjct: 77  TALINGYFVRGHREMGFALFAEMRRDGVE--PNLYTYNCLIGEWCRTG-----------E 123

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
              A  LF  M  KG V +VV+YN LI G C+  +++ A++LF+ M ++G  P+ VT+N 
Sbjct: 124 FKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNL 183

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVD 386
            I  Y    ++  A+    +M+    G+P S  +Y  +I   C    +  A     ++ +
Sbjct: 184 LIDGYGKAGKMANALHFFNQMKA--AGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKE 241

Query: 387 GGSVPREYTYKLVCDALNAAEE 408
            G  P + TY ++  A     E
Sbjct: 242 RGLAPTKVTYTILIAAFAKENE 263



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 115/273 (42%), Gaps = 16/273 (5%)

Query: 130 HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEAL 189
           HN ++   +     R + +K      + M R G    + T ++  LI   G+ G +  AL
Sbjct: 141 HNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNL--LIDGYGKAGKMANAL 198

Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
             F +MK     P V  YN +I   CRV +  +A      M+  G    P   TYTILI+
Sbjct: 199 HFFNQMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGL--APTKVTYTILIA 256

Query: 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
           ++ K              +  A  +   M   G   DV +Y  L+   C   ++  A +L
Sbjct: 257 AFAK-----------ENEMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKL 305

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
           F  M+ KG  PN V Y+  I  Y       KA+ ++ +M+  N  +P  +SY   I  LC
Sbjct: 306 FQSMDLKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEMRK-NGLIPNVASYCLTIRLLC 364

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             G+  EA   + ++   G    E   +++ DA
Sbjct: 365 NEGKCQEAEALIDDMEHAGLQTSETICRILLDA 397



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 75/199 (37%), Gaps = 17/199 (8%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           V+  LC       A  +L +    G     DV   T L+   C+ G            + 
Sbjct: 8   VVRRLCVAAEVRSALAVLARGTKSG-DAALDVAACTALVHVCCQSG-----------DVA 55

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA  +F +M   G  P+ V Y  LI+G       E    LF +M + G  PN  TYN  I
Sbjct: 56  EARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLI 115

Query: 330 RYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
             +    E   A  +  +M  + + H V    SY  +I  LC   ++ +A      +   
Sbjct: 116 GEWCRTGEFKSARLLFDEMPVKGVVHNV---VSYNILIAGLCRHSKLKDAVQLFEAMRRE 172

Query: 388 GSVPREYTYKLVCDALNAA 406
           G  P   T+ L+ D    A
Sbjct: 173 GIRPSIVTFNLLIDGYGKA 191


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 114/223 (51%), Gaps = 14/223 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 209 QPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGL--VPNGVTFTTLIDGHCKNG----- 261

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +  +PD++ YN LI G CK   +++A +L D+M+ KG  P
Sbjct: 262 ------RVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKP 315

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           ++ TY + I       ++D A E  ++M   N  +    +YT +I  LC+ GR ++A   
Sbjct: 316 DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD-DVAYTALISGLCQEGRSVDAEKM 374

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           L E++  G  P   TY ++ +      +       L++  RDG
Sbjct: 375 LREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDG 417



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 106/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 142 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 191

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A  LFD+M  KG +P
Sbjct: 192 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVP 245

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A 
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL---LPDLITYNTLIYGLCKKGDLKQAH 302

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P ++TY  + D 
Sbjct: 303 DLIDEMSMKGLKPDKFTYTTLIDG 326



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 26/234 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ +   GL+D +       NG   TT     LI    + G V+ A+  + +
Sbjct: 223 CKE-----SKMDGANGLFDEMLVKGLVPNGVTFTT-----LIDGHCKNGRVDLAMEIYKQ 272

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A  L+++M + G +  PD +TYT LI   CK 
Sbjct: 273 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK--PDKFTYTTLIDGCCKE 330

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G + T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 331 GDLDTAFEH--RKRMIQEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 378

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
              G  P+  TY   +  +    ++ K  +++++MQ   H  P+  +Y  +++ 
Sbjct: 379 LSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHA-PSVVTYNVLMNG 431


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 135/299 (45%), Gaps = 30/299 (10%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           + ++ K M I + R   +     +LKDM RRG   +V  ++ T +I    E+G  +    
Sbjct: 230 DSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGF--VVDNATCTLMISTFCEKGFASRVFW 287

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
            F +  +   +P++  +  +IN LC+ G+  +A  +LE+M   G++  P+VYT+T LI  
Sbjct: 288 YFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWK--PNVYTHTALIDG 345

Query: 251 YCKYGMQTGC----RKAIRRRIWEAN-HLFRLMLF--------------------KGFVP 285
            CK G          K +R   ++ N H +  M+                     +G VP
Sbjct: 346 LCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVP 405

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           +   Y CLIDG  K    E+A EL D M K+G   N  TYN+FI          +A +++
Sbjct: 406 NTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLL 465

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           +K   L     T  +YT +I  LC      EA  F +++   G  P  +TY  +  A +
Sbjct: 466 KKGFRLGLQADT-VTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFS 523



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 158/366 (43%), Gaps = 53/366 (14%)

Query: 71  GFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATE--------FYHWV 122
            +  +TP   R+L+  + N++ N     P +    Q +T+  + A+E        F++W 
Sbjct: 78  SYSQQTP-HVRLLQSPSINLSVN-----PDSLTHEQAITVVASLASEAGSMVALSFFNWA 131

Query: 123 ERF--FDFF--------------------HNEMTCKEMGIVFARGNNVKGLWDFLKDMSR 160
             F  F +F                    H  M C  M  VFA     +   + + +M  
Sbjct: 132 IGFPKFRYFMRFYIVCATSFIGNENFERAHEVMDC--MVRVFAEIGKFQEAVNMVIEM-- 187

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
             +G ++T  ++ C+  V GE GLV  A   F  M+     PD  +Y ++  A CR+G  
Sbjct: 188 ENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDEMRVRGVCPDSVSYKLMAIAYCRMGRI 247

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           +     L+ M   GF    D  T T++IS++C+ G  +       R  W  +    L   
Sbjct: 248 SDTDRWLKDMVRRGF--VVDNATCTLMISTFCEKGFAS-------RVFWYFDKWVEL--- 295

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  P+++ +  LI+G CK   I++A E+ ++M KKG  PN  T+ + I         +K
Sbjct: 296 -GLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEK 354

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A  +  K+   +   P   +YT +IH  C+  ++  A   L+ + + G VP   TY  + 
Sbjct: 355 AFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLI 414

Query: 401 DALNAA 406
           D  + A
Sbjct: 415 DGHSKA 420



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 97/233 (41%), Gaps = 14/233 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T +I    +E  +N A     RMK+    P+   Y  +I+   + GNF KA  L++ M
Sbjct: 374 TYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLM 433

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              GF    +++TY   I S CK G           R  EA  L +     G   D V Y
Sbjct: 434 GKEGF--SANIFTYNAFIDSLCKKG-----------RFLEACKLLKKGFRLGLQADTVTY 480

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI   C+      AL  F  M K G  P+  TYN+ I  +S    ++++ ++  +   
Sbjct: 481 TILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVG 540

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           L   VPT  +YT +I   C    V  A  F   + D G  P   TY  +   L
Sbjct: 541 LGL-VPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGL 592



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 30/214 (14%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           +  G +  T + TCLI    + G   +A      M +     +++ YN  I++LC+ G F
Sbjct: 399 KEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRF 458

Query: 221 NKARFLLEQMELPGFRC--PPDVYTYTILISSYC----------------KYGMQTGCRK 262
            +A  LL++    GFR     D  TYTILIS  C                K G+Q     
Sbjct: 459 LEACKLLKK----GFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHT 514

Query: 263 --------AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                   + +RR+ E+  LF   +  G VP    Y  +I G C+   +  AL+ F+ M+
Sbjct: 515 YNTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMS 574

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
             GC P+ +TY + I      +++D+A ++   M
Sbjct: 575 DHGCTPDSLTYGALISGLCKESKLDEACQLYEAM 608



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 108/261 (41%), Gaps = 18/261 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G    T + T LI  L       EAL  F +M +   +PD++ YN +I A  R     ++
Sbjct: 472 GLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEES 531

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L    E  G    P   TYT +I  YC+            R +  A   F  M   G 
Sbjct: 532 EKLFA--EAVGLGLVPTKETYTSMICGYCR-----------DRNVSLALKFFNRMSDHGC 578

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PD + Y  LI G CK  +++ A +L++ M  KG  P  VT  +    Y    + D A  
Sbjct: 579 TPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLA--YEYCKQDDSATA 636

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           M+  ++ L+  +   +  T +I  LC   +V  A  F  +L+D        T      A 
Sbjct: 637 MV-ILERLDKKLWIRTVNT-LIRKLCSERKVGMAVLFFHKLLDKDQNVDRVTLTAFTTAC 694

Query: 404 NAAEEPSLLDDGLRKRIRDGI 424
             + + +L+ D L +RI  GI
Sbjct: 695 YESNKYALVSD-LSERISKGI 714



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 71/191 (37%), Gaps = 28/191 (14%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G + T  + T +I     +  V+ AL  F RM    C PD   Y  +I+ LC+    +
Sbjct: 540 GLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLD 599

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR---RIWEANHLFRLM 278
           +A  L E M   G    P   T   L   YCK          + R   ++W         
Sbjct: 600 EACQLYEAMVDKGL--SPCEVTRLTLAYEYCKQDDSATAMVILERLDKKLW--------- 648

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI------RYY 332
                   +   N LI   C   ++  A+  F  +  K    +RVT  +F         Y
Sbjct: 649 --------IRTVNTLIRKLCSERKVGMAVLFFHKLLDKDQNVDRVTLTAFTTACYESNKY 700

Query: 333 SVVNEIDKAIE 343
           ++V+++ + I 
Sbjct: 701 ALVSDLSERIS 711


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 14/225 (6%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L ++GLV+EAL     M     RP++  Y  +I  LC  G + +A  LL++M   G R  
Sbjct: 227 LCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMR-- 284

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD+    IL+ ++CK G           ++ +A  +   M+  G  PDV  YN LI   C
Sbjct: 285 PDLQMLNILVDAFCKEG-----------KVMQAKSVIGFMILTGEGPDVFTYNSLIHIYC 333

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
              ++  A+ +F  M  +G +P+ V + S I  +     I+KA+ ++ +M  +   VP  
Sbjct: 334 LQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGF-VPDV 392

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +++T +I   C+AGR L A++    +   G VP   T  ++ D L
Sbjct: 393 ATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGL 437



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 123/268 (45%), Gaps = 24/268 (8%)

Query: 163 NGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           NG+ V  + VT  CLI+ L   G   EA +    M +   RPD+   N++++A C+ G  
Sbjct: 244 NGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKV 303

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            +A+ ++  M L G    PDV+TY  LI  YC           ++ ++ EA  +F LM+ 
Sbjct: 304 MQAKSVIGFMILTGE--GPDVFTYNSLIHIYC-----------LQNKMNEAMRVFHLMVS 350

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G +PD+V +  LI G CK   I +A+ L ++M+K G +P+  T+ + I  +        
Sbjct: 351 RGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLA 410

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A E+   M      VP   +   I+  LC+   + EA      +           Y ++ 
Sbjct: 411 AKELFLNMHKYGQ-VPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILL 469

Query: 401 DA------LNAAEE--PSLLDDGLRKRI 420
           D       LNAA E   SL   GL+  +
Sbjct: 470 DGMCSAGKLNAAWELFSSLPGKGLQINV 497



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 20/231 (8%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T ++  +I  L    LV    +    M +    P V     +IN LC  GN  +A  L +
Sbjct: 112 TITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLAD 171

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYG---MQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
            ME   +  P DVYTY +LI+  CK G      G  + +  R W+              P
Sbjct: 172 HMEKMWY--PLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWK--------------P 215

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           +VV Y+ ++DG CK   +  AL L  +MN KG  PN VTY   I+         +A  ++
Sbjct: 216 NVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLL 275

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +M  +    P       ++ A C+ G+V++A+  +  ++  G  P  +TY
Sbjct: 276 DEMMKMGM-RPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTY 325



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 105/245 (42%), Gaps = 17/245 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EAL  F  M + +  P V  + +++ A+ R+ ++  A  L++ M         D  T 
Sbjct: 57  IDEALDLFQGMARMKPLPSVKDFTLLLGAIVRLKHYTTAISLVKHM-FSSLGIEADTITL 115

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            I+I+  C+        K +         +F+L    G  P V+    LI+G C    + 
Sbjct: 116 NIVINCLCRL-------KLVAFGFSVLGTMFKL----GLEPTVMTLTTLINGLCVQGNVA 164

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +A+ L D M K     +  TY   I       +   A+  +RKM+  N   P    Y+ I
Sbjct: 165 QAVGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWK-PNVVVYSTI 223

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRI 420
           +  LC+ G V EA +  +E+   G  P   TY      +C+     E  SLLD+ ++  +
Sbjct: 224 MDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGM 283

Query: 421 RDGIE 425
           R  ++
Sbjct: 284 RPDLQ 288



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 15/219 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + +  N+      L++MS+ G    V T   T LI    + G    A   F  M ++   
Sbjct: 367 WCKDKNINKAMHLLEEMSKMGFVPDVATW--TTLIGGFCQAGRPLAAKELFLNMHKYGQV 424

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++    V+++ LC+    ++A  L + ME        ++  Y+IL+   C  G      
Sbjct: 425 PNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNL--DLNIVIYSILLDGMCSAGKLNAA- 481

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                  WE   LF  +  KG   +V  Y  +I G CK   +++A +L  +M + GC+PN
Sbjct: 482 -------WE---LFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPN 531

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
             TYN F++      EI ++I+ +  M++    V  +++
Sbjct: 532 NCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAATT 570


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 17/260 (6%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +LVT   V   +  L + G  + A     +M+Q +  P V  Y  +I+ LC+  + + A 
Sbjct: 220 DLVTYGVV---VNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDAL 276

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            L ++ME  G R  P+V TY+ LIS  C YG           R  +A+ L   M+ +   
Sbjct: 277 NLFKEMETKGIR--PNVVTYSSLISCLCNYG-----------RWSDASRLLSDMIERKIN 323

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           PDV  ++ LID   K  ++  A +L+D+M K+   P+ VTY+S I  + + + +D+A +M
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
              M +  H  P   SY+ +I   C+A RV E  +   E+   G V    TY  +   L 
Sbjct: 384 FEFMVS-KHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLF 442

Query: 405 AAEEPSLLDDGLRKRIRDGI 424
            A +  +  +  ++ + DG+
Sbjct: 443 QAGDCDMAQEIFKEMVSDGV 462



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 125/259 (48%), Gaps = 29/259 (11%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I  L +   +++AL  F  M+    RP+V  Y+ +I+ LC  G ++ A  LL  M  
Sbjct: 260 TTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM-- 317

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRK------------------------AIRRRI 268
              +  PDV+T++ LI ++ K G      K                         +  R+
Sbjct: 318 IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRL 377

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            EA  +F  M+ K   PDVV+Y+ LI G CK  R++  +ELF +M+++G + N VTY + 
Sbjct: 378 DEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDG 387
           I+      + D A E+ ++M  ++ GVP +  +Y  ++  LC+ G++ +A      L   
Sbjct: 438 IQGLFQAGDCDMAQEIFKEM--VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 495

Query: 388 GSVPREYTYKLVCDALNAA 406
              P  YTY ++ + +  A
Sbjct: 496 KMEPTIYTYNIMIEGMCKA 514



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 19/234 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F +   V    +  ++MS+RG   LV  T + T LI+ L + G  + A   F  M     
Sbjct: 406 FCKAKRVDEGMELFREMSQRG---LVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P++  YN +++ LC+ G   KA  + E ++    +  P +YTY I+I   CK G     
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS--KMEPTIYTYNIMIEGMCKAG----- 515

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ +   LF  +  KG  PDVVAYN +I G C+    E A  LF +M + G +P
Sbjct: 516 ------KVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 569

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           N   YN+ IR      + + + E++++M++   G    +S   ++  +   GR+
Sbjct: 570 NSGCYNTLIRARLRDGDREASAELIKEMRSC--GFAGDASTIGLVTNMLHDGRL 621



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 123/261 (47%), Gaps = 33/261 (12%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R  + K  +D+ + +SR G  EL                  +++A+A F  M + R  P 
Sbjct: 38  RAFSGKTSYDYREKLSRNGLSELK-----------------LDDAVALFGEMVKSRPFPS 80

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +  ++ +++A+ ++  F+    L EQM+  G   P + YTY+ILI+ +C+          
Sbjct: 81  IIEFSKLLSAIAKMNKFDVVISLGEQMQNLGM--PHNHYTYSILINCFCR---------- 128

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
            R ++  A  +   M+  G+ P++V  + L++G C + RI  A+ L D M   G  PN V
Sbjct: 129 -RSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTV 187

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           T+N+ I    + N+  +A+ ++ +M  +  G  P   +Y  +++ LC+ G    A   L 
Sbjct: 188 TFNTLIHGLFLHNKASEAVALIDRM--VAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLN 245

Query: 383 ELVDGGSVPREYTYKLVCDAL 403
           ++  G   P    Y  + D L
Sbjct: 246 KMEQGKLEPGVLIYTTIIDGL 266



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 18/214 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA+A   +M     +P+   +N +I+ L      ++A  L+++M   G  C PD+ TY
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKG--CQPDLVTY 224

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ++++  CK G  T     +  ++ +              P V+ Y  +IDG CK   ++
Sbjct: 225 GVVVNGLCKRG-DTDLAFILLNKMEQGK----------LEPGVLIYTTIIDGLCKNKHMD 273

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYT 362
            AL LF +M  KG  PN VTY+S I           A  ++  M  + +N   P   +++
Sbjct: 274 DALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN---PDVFTFS 330

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +I A  + G+++EA     E+V     P   TY
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 364


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 127/266 (47%), Gaps = 17/266 (6%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M  VF  G+  KG   F +D+  +G G L    S + LI  L + G   E  + F+ MKQ
Sbjct: 538 MDCVFKAGDVEKGRAIF-EDI--KGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQ 594

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
                D  AYN V++  C+ G  +KA  +LE+M++   R PP V TY  +I    K    
Sbjct: 595 QGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVK--RVPPTVATYGSIIDGLAKID-- 650

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    R+ EA  LF     KG   +V+ Y+ LIDG  K  RI+ A  + ++M KKG
Sbjct: 651 ---------RLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKG 701

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             PN  T+NS +       EI++A+   + M+ +    P + +Y+ +I+ LC   +  +A
Sbjct: 702 LTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCS-PNTYTYSILINGLCRVQKYNKA 760

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
             F  E+   G VP   TY  +   L
Sbjct: 761 FVFWQEMQKQGLVPNVVTYTTMIAGL 786



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 115/240 (47%), Gaps = 17/240 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L++ L  EG V  ALA    +K     PD+  YNV I+   + GN + A     +++ 
Sbjct: 221 TTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKS 280

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  PD  +YT +I   CK G           R+ EA  LF  M  +  VP   AYN 
Sbjct: 281 QGLK--PDDVSYTSMIWVLCKAG-----------RLSEAEELFGQMETERAVPCAYAYNT 327

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +I G     + E A +L D + ++GCIP+ V++NS +       ++D+A+ +   M+   
Sbjct: 328 MIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMK--K 385

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE--EPS 410
              P SS+Y  II  LC AG+V EA     E+   G  P   T  ++ D L  A+  EP+
Sbjct: 386 DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPA 445



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 116/237 (48%), Gaps = 16/237 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+     G   +    F  M +  C+PD+   N  ++ + + G+  K R + E ++ 
Sbjct: 500 TSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKG 559

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            GF   PDV +Y+ILI    K G           +  E + +F  M  +GF  D  AYN 
Sbjct: 560 YGFL--PDVRSYSILIHGLTKAG-----------QARETSSIFHAMKQQGFALDARAYNA 606

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           ++DG CK+ ++++A E+ ++M  K   P   TY S I   + ++ +D+A  +  + +  +
Sbjct: 607 VVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAK--S 664

Query: 353 HGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            G+  +   Y+ +I    + GR+ EA   L E++  G  P  YT+  + DAL  AEE
Sbjct: 665 KGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEE 721



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 18/198 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   +   +  L++M ++G    V T +      V  EE  +NEAL  F  MK+ +C 
Sbjct: 681 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEE--INEALICFQSMKEMKCS 738

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+ Y Y+++IN LCRV  +NKA    ++M+  G    P+V TYT +I+   K G      
Sbjct: 739 PNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGL--VPNVVTYTTMIAGLAKVG------ 790

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I +A  LF      G  PD  ++N LI+G     R   A  +F++   KGC   
Sbjct: 791 -----NITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGC--- 842

Query: 322 RVTYNSFIRYYSVVNEID 339
           R+   + I     +N+ +
Sbjct: 843 RINVKACISLLDALNKAE 860



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 107/247 (43%), Gaps = 17/247 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +  NV   W F  ++  +G        S T +I VL + G ++EA   F +M+  R  
Sbjct: 262 FGKAGNVDMAWKFFHELKSQGLKP--DDVSYTSMIWVLCKAGRLSEAEELFGQMETERAV 319

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P  YAYN +I      G F  A  LL+Q++  G  C P V ++  +++   K        
Sbjct: 320 PCAYAYNTMIMGYGSAGQFENAYKLLDQLKERG--CIPSVVSFNSILTCLGK-------- 369

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              +R++ EA  LF  M  K   P+   YN +ID  C   ++E A  + D+M   G  PN
Sbjct: 370 ---KRKVDEALTLFEAMK-KDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPN 425

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            +T N  +       + + A EM           P S +Y  +I  L + G V +A    
Sbjct: 426 LLTVNIMVDRLCKAKKFEPAYEMFETASQRGCN-PNSVTYCSLIDGLGKKGNVDDAYRLF 484

Query: 382 AELVDGG 388
             ++D G
Sbjct: 485 ENMLDTG 491



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 116/286 (40%), Gaps = 30/286 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           +      +  +  L  +  RG   + +  S   ++  LG++  V+EAL  F  MK+    
Sbjct: 332 YGSAGQFENAYKLLDQLKERGC--IPSVVSFNSILTCLGKKRKVDEALTLFEAMKK-DAE 388

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-------Y 254
           P+   YN++I+ LC  G   +A  + ++ME  G    P++ T  I++   CK       Y
Sbjct: 389 PNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLF--PNLLTVNIMVDRLCKAKKFEPAY 446

Query: 255 GM-----QTGCRK------------AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            M     Q GC                +  + +A  LF  ML  G   + V Y  LI   
Sbjct: 447 EMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNF 506

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
               R E   ++F +MN++GC P+    N+++       +++K   +   ++     +P 
Sbjct: 507 FMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGF-LPD 565

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             SY+ +IH L +AG+  E       +   G       Y  V D  
Sbjct: 566 VRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGF 611



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 19/214 (8%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +++AL R    + A  ++  M    FR  P    YT+LI +  +            R+  
Sbjct: 153 LVSALVRTRRLDDAERVIAAMRRLKFR--PAFSAYTVLIGAMAE-----------ARQPE 199

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            A  L R M   G+   V  +  L+    +  R+E AL L D++      P+ V YN  I
Sbjct: 200 RALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCI 259

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             +     +D A +   +++  + G+ P   SYT +I  LC+AGR+ EA +   ++    
Sbjct: 260 DCFGKAGNVDMAWKFFHELK--SQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETER 317

Query: 389 SVPREYTYKLVCDALNAA---EEPSLLDDGLRKR 419
           +VP  Y Y  +     +A   E    L D L++R
Sbjct: 318 AVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKER 351


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 14/235 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    E G+V+EAL     M++     DV+AYN + + LC++   ++A+ LL  M   G
Sbjct: 410 LIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERG 469

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+  ++T LI  YCK G              EA  +FR M  KG VP+++ YN LI
Sbjct: 470 --VSPNTMSFTTLIDIYCKEG-----------NFVEAKRVFREMEEKGNVPNIITYNVLI 516

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K   ++ A +L D++  +G IP+  T  S I    +  ++D A+++  +M      
Sbjct: 517 DGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGL- 575

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
           VP   +YT +I  L + GR  EA     E+ + G  P +  Y  +  +L++A+E 
Sbjct: 576 VPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSADES 630



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 124/277 (44%), Gaps = 21/277 (7%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           ++ G+ + L  M + G    V T   T LI      G + EA   F  M++     DVY 
Sbjct: 279 DLGGVAEILTLMEKEGVACNVVT--YTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYV 336

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           Y  +I+  CR GN  +A  L ++M   G    P  +TY  LI   CK G           
Sbjct: 337 YTSIISCNCRSGNVKRALVLFDEMTDKGL--IPSAHTYGALIHGVCKAG----------- 383

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++  A  L   M  KG   + V +N LIDG C++  ++ AL L   M KKG   +   YN
Sbjct: 384 QMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYN 443

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           S       +N  D+A  ++  M  +  GV P + S+T +I   C+ G  +EA+    E+ 
Sbjct: 444 SIASGLCKLNRKDEAKGLLFSM--VERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREME 501

Query: 386 DGGSVPREYTYKLVCDALNA---AEEPSLLDDGLRKR 419
           + G+VP   TY ++ D  +     +E   L D L  R
Sbjct: 502 EKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENR 538



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 96/201 (47%), Gaps = 21/201 (10%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R +  KGL   L  M  RG      T S T LI +  +EG   EA   F  M++    P+
Sbjct: 454 RKDEAKGL---LFSMVERGVSP--NTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPN 508

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +  YNV+I+   + GN  +A  L +++E  G    PDVYT T LI   C           
Sbjct: 509 IITYNVLIDGYSKRGNMKEAHKLKDELENRGL--IPDVYTCTSLIHGEC----------- 555

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
           I  ++  A  LF  M  +G VP+VV Y  +I G  K  R E A +L+D+M + G  P+  
Sbjct: 556 IDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDT 615

Query: 324 TYNSFIRYYSVVNEIDKAIEM 344
            Y+S +     ++  D++I M
Sbjct: 616 VYSSLV---GSLHSADESISM 633



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 102/243 (41%), Gaps = 53/243 (21%)

Query: 173 TCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ- 229
           +CL+ +L     G V+  L  F RM        VY+  +V++ LC+ G+    R L+++ 
Sbjct: 196 SCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEV 255

Query: 230 ----------------------------------MELPGFRCPPDVYTYTILISSYCKYG 255
                                             ME  G  C  +V TYT+LI  +   G
Sbjct: 256 AAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVAC--NVVTYTLLIHGFSNIG 313

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                      +I EA  LF  M  KG   DV  Y  +I   C++  ++RAL LFD+M  
Sbjct: 314 -----------KIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTD 362

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRV 374
           KG IP+  TY + I       +++ A  ++ +MQ    G+  +   +  +I   CE+G V
Sbjct: 363 KGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQ--GKGIDLNPVIFNTLIDGYCESGMV 420

Query: 375 LEA 377
            EA
Sbjct: 421 DEA 423


>gi|52075946|dbj|BAD46026.1| PPR-protein-like [Oryza sativa Japonica Group]
          Length = 629

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 130/282 (46%), Gaps = 31/282 (10%)

Query: 154 FLKDMSRR-GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            L+D+S R    E +  +S   LI+     G +  +++ F+R++     P+   Y ++  
Sbjct: 192 LLRDVSTRLPLPEPLVLASHNLLIEAATRSGHLAVSISLFHRLRSLHVSPNAETYRILTQ 251

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           +LCR G  + A  LL++M   G   P D   YT ++++ C+           ++++ EA 
Sbjct: 252 SLCRRGQVHTAATLLDEMLHRGI--PADPLAYTTVLNALCR-----------KKQLREAY 298

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L  LM  +G  PD+V YN +I G C+  R   A ++F DM + GC PN VTY + +   
Sbjct: 299 RLLCLMRGRGVSPDIVHYNTVIVGVCREGRPLDACKVFGDMRESGCAPNAVTYTAVVNGL 358

Query: 333 SVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
            V    DKA   +  M  L  G +P  S    +I   C  G+V EA   +  ++D G VP
Sbjct: 359 CVNGLYDKAEAYLDDM--LGKGLLPHFSVLHSVIKGCCAVGKVNEAAGMMTRMLDLGMVP 416

Query: 392 REYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMK 433
              T+  V  ++ + E              D +E    QVMK
Sbjct: 417 HAETWSSVIRSVCSDE--------------DNVEVVLLQVMK 444


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 14/217 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M      PDVY Y+V+IN LC+    + A  L ++M + G    P+  
Sbjct: 191 GDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGL--VPNGV 248

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +  +PD++ YN LI G CK   
Sbjct: 249 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD 297

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           + +A +L D+M+ KG  P+++TY + I       ++D A E  ++M   N  +    +YT
Sbjct: 298 LNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD-DVAYT 356

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +I  LC+ GR ++A   + E++  G  P   TY ++
Sbjct: 357 ALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMI 393



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++ +  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 142 LYFFNILXHRFCKEGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 191

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +PN V
Sbjct: 192 ---DLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGV 248

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A D +
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSL---LPDLITYNTLIYGLCKKGDLNQAHDLI 305

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+   G  P + TY  + D 
Sbjct: 306 DEMSMKGLKPDKITYTTLIDG 326



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 16/198 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+ N+A  L+++M
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEM 308

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
            + G +  PD  TYT LI   CK G + T      R+R+ + N   RL        D VA
Sbjct: 309 SMKGLK--PDKITYTTLIDGCCKEGDLDTAFEH--RKRMIQEN--IRL--------DDVA 354

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  LI G C+  R   A ++  +M   G  P+  TY   I       ++ K  +++++MQ
Sbjct: 355 YTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQ 414

Query: 350 NLNHGVPTSSSYTPIIHA 367
              H  P+  +Y  +++ 
Sbjct: 415 XDGHA-PSVVTYNVLMNG 431



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 30/243 (12%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   ++  A +++   + R G  + +      +E  G +   D+Y +
Sbjct: 17  HTLXSYCTMIHFVCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGNQ-RSDIYVF 75

Query: 245 TILISSYCKYGM---QTGCRKAIR-RRIW--------EANHLFRLMLFK----------- 281
           + LI++Y + G       C +  R  + W           HL +L  FK           
Sbjct: 76  SGLITAYLESGFLRDAVECYRLTREHKFWLPFDTCRKVLEHLMKLKYFKLVWGFYEEFLE 135

Query: 282 -GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G+   +  +N L    CK   I  A  +FD + K G  P+ V+YN+ +  Y  + ++D+
Sbjct: 136 CGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             ++   M     GV P   +Y+ +I+ LC+  ++  A +   E++  G VP   T+  +
Sbjct: 196 GFKLKSAMH--ASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTL 253

Query: 400 CDA 402
            D 
Sbjct: 254 IDG 256



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 15/144 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D + +MS +G      T   T LI    +EG ++ A     RM Q   R D  AY  +I+
Sbjct: 303 DLIDEMSMKGLKPDKIT--YTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALIS 360

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+ G    A  ++ +M   G +  PD  TYT++I+  CK G            + + +
Sbjct: 361 GLCQEGRSVDAEKMMREMLSVGLK--PDTGTYTMIINEVCKKG-----------DVGKGS 407

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDG 296
            L + M   G  P VV YN L++G
Sbjct: 408 KLLKEMQXDGHAPSVVTYNVLMNG 431


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A E  +KM   N  +    +YT
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 101/201 (50%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +     R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWSLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M   G +PN V
Sbjct: 186 ---DLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+D +
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQDLI 299

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+   G  P + TY  + D 
Sbjct: 300 DEMSMKGLKPDKITYTTLIDG 320



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG +    + T LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANELFDEMLD-----NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK--PDKITYTTLIDGNCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+++ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKKMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 138/276 (50%), Gaps = 19/276 (6%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           +GL  F + M R G    V TS+   L+  L +    +     +  M++F   P++Y +N
Sbjct: 251 EGLRSF-RRMLRVGFVPTVITSNY--LLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFN 307

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
           ++ + LC+ G+  K    LE+ME  GF   PD+ TY  LI+SYC+ G           R+
Sbjct: 308 ILTHVLCKDGDTGKVNKFLEKMEEEGF--DPDIVTYNTLINSYCRKG-----------RL 354

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +A +L+++M  +G VPD+V+Y  L++G CK  R+  A +LF  M  +G  P+ VTYN+ 
Sbjct: 355 DDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTL 414

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
           I  Y    ++ ++  ++  M  + +G+ P S +   ++    + G+ L A + + EL   
Sbjct: 415 IHGYCKEGKMQESRSLLHDM--IWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRF 472

Query: 388 GSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           G    +  Y  +  AL     P    + L +  +DG
Sbjct: 473 GVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDG 508



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 112/273 (41%), Gaps = 47/273 (17%)

Query: 188 ALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCP-PDVYTY 244
           AL+ F  +K     RP    Y ++++ L    NF++A +FL E +EL     P  DV+  
Sbjct: 162 ALSFFNWVKNDLGLRPSTQNYCIIVHTLAWSRNFSQAIKFLCELVELVKDDLPGEDVFKN 221

Query: 245 TILISSYCKYG--MQTGCRKAIRR--RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
            IL +  C +   +     KA  R  R+ E    FR ML  GFVP V+  N L++G  K 
Sbjct: 222 LILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKL 281

Query: 301 YRIERALELFDDMNKKGCIPNR-----------------------------------VTY 325
              +R  E++++M + G  PN                                    VTY
Sbjct: 282 NYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTY 341

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           N+ I  Y     +D A  + + M      VP   SYT +++ LC+ GRV EA      +V
Sbjct: 342 NTLINSYCRKGRLDDAFYLYKIMYR-RGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMV 400

Query: 386 DGGSVPREYTYKLV----CDALNAAEEPSLLDD 414
             G  P   TY  +    C      E  SLL D
Sbjct: 401 HRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHD 433



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 123/293 (41%), Gaps = 19/293 (6%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSS 171
           ++  E Y  +ERF     N  T   +  V  +  +   +  FL+ M   G + ++VT ++
Sbjct: 285 DRCWEVYEEMERF-GIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNT 343

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              LI     +G +++A   +  M +    PD+ +Y  ++N LC+ G   +A  L  +M 
Sbjct: 344 ---LINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMV 400

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G    PD+ TY  LI  YCK G           ++ E+  L   M++ G  PD     
Sbjct: 401 HRGL--SPDIVTYNTLIHGYCKEG-----------KMQESRSLLHDMIWNGISPDSFTCW 447

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L++G  K  +   AL L  ++ + G   ++  Y+  I      N    A  ++ +M   
Sbjct: 448 VLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQD 507

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
            H       Y  +I + C+   + EA     E+VD    P   TY+ V   L+
Sbjct: 508 GHKXEL-EIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLS 559



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 109/256 (42%), Gaps = 45/256 (17%)

Query: 154 FLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQF--RCRPDVYAYNV 209
            L DM   G    ++  S TC  L++  G+EG    AL     +++F      D+Y+Y +
Sbjct: 430 LLHDMIWNG----ISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLI 485

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK---------------- 253
           V  ALCR      A+ LLE+M   G +   ++Y    LI S+C+                
Sbjct: 486 V--ALCRENRPFAAKNLLERMSQDGHKXELEIYNE--LIKSFCQCDCIAEALLLKMEMVD 541

Query: 254 ---------YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
                    Y    GC   + R + E   L   M+  G +PD+     L  G C+   I+
Sbjct: 542 KEIKPNLATYRAVJGCLSRLSRSM-EGESLVGEMVASGXLPDLEICRALFYGYCRENDID 600

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE---MMRKMQNLNHGVPTSSSY 361
           +A  L     K+  I +  ++N+ IR  S   +I +++E   MM KM  L +  P +  Y
Sbjct: 601 KAESLLSFXAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKMGLLPN--PLTCKY 658

Query: 362 TPIIHALCEAGRVLEA 377
             +I  L +A RV  A
Sbjct: 659 --VIDGLWKARRVDSA 672


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 29/248 (11%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG + +A   F  + +   RP V ++N +IN  C+VGN +    L   ME    R  PD
Sbjct: 252 KEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKS--RTRPD 309

Query: 241 VYTYTILISSYCKYGMQTG--------CRKAI----------------RRRIWEANHLFR 276
           V+TY+ LI++ CK     G        C + +                  +I      ++
Sbjct: 310 VFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQ 369

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            ML KG  PD+V YN L++G CK   +  A  + D M ++G  P++VTY + I  +    
Sbjct: 370 KMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGG 429

Query: 337 EIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
           ++D A+E+ ++M    +G+      ++ +I  +C+ GRV++A   L E++  G  P + T
Sbjct: 430 DVDTALEIRKEMD--QNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVT 487

Query: 396 YKLVCDAL 403
           Y ++ DA 
Sbjct: 488 YTMMMDAF 495



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 117/258 (45%), Gaps = 18/258 (6%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           N + G      +M  RG   L+    + T LI      G ++    ++ +M     +PD+
Sbjct: 324 NKMDGAHRLFYEMCERG---LIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDI 380

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             YN ++N  C+ G+   AR +++ M   G R  PD  TYT LI  +C+ G        I
Sbjct: 381 VLYNTLVNGFCKNGDLVAARNIVDGMIRRGLR--PDKVTYTTLIDGFCRGG-DVDTALEI 437

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           R+ + +           G   D V ++ LI G CK  R+  A     +M + G  P+ VT
Sbjct: 438 RKEMDQ----------NGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVT 487

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y   +  +    +     +++++MQ+  H +P   +Y  +++ LC+ G++  A   L  +
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQSDGH-IPNVVTYNVLLNGLCKLGQMKNADMLLDAM 546

Query: 385 VDGGSVPREYTYKLVCDA 402
           ++ G VP + TY  + + 
Sbjct: 547 LNVGVVPDDITYNTLLEG 564



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 18/188 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F RG +V    +  K+M +  NG  +     + LI  + +EG V +A      M +   +
Sbjct: 425 FCRGGDVDTALEIRKEMDQ--NGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMK 482

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   Y ++++A C+ G+      LL++M+  G    P+V TY +L++  CK G      
Sbjct: 483 PDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGH--IPNVVTYNVLLNGLCKLG------ 534

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++  A+ L   ML  G VPD + YN L++G    +R   A + +    + G + +
Sbjct: 535 -----QMKNADMLLDAMLNVGVVPDDITYNTLLEG---HHRHANASKHYKQKPEIGIVAD 586

Query: 322 RVTYNSFI 329
             +Y S +
Sbjct: 587 LASYKSLV 594



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 49/210 (23%)

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           ME+     P +VY + IL++ +CK G            I +A  +F  +  +   P VV+
Sbjct: 229 MEILDAGFPLNVYVFNILMNKFCKEG-----------NICDAQKVFDEITKRSLRPTVVS 277

Query: 290 YNCLIDGCCKT------YRIERALE-----------------------------LFDDMN 314
           +N LI+G CK       +R++  +E                             LF +M 
Sbjct: 278 FNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMC 337

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGR 373
           ++G IPN V + + I  +S   +ID   E  +KM  L+ G+ P    Y  +++  C+ G 
Sbjct: 338 ERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKM--LSKGLQPDIVLYNTLVNGFCKNGD 395

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++ AR+ +  ++  G  P + TY  + D  
Sbjct: 396 LVAARNIVDGMIRRGLRPDKVTYTTLIDGF 425



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 72/148 (48%), Gaps = 1/148 (0%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           +L  GF  +V  +N L++  CK   I  A ++FD++ K+   P  V++N+ I  Y  V  
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGN 290

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           +D    +   M+  +   P   +Y+ +I+ALC+  ++  A     E+ + G +P +  + 
Sbjct: 291 LDVGFRLKHHMEK-SRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFT 349

Query: 398 LVCDALNAAEEPSLLDDGLRKRIRDGIE 425
            +    +   +  L+ +  +K +  G++
Sbjct: 350 TLIHGHSRNGQIDLMKESYQKMLSKGLQ 377


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 131/290 (45%), Gaps = 57/290 (19%)

Query: 152 WDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           ++   +M  +G +  +VT +S+   +  LGE   VN  L     M   +  P+  +   V
Sbjct: 234 FNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLN---EMVDSKIMPNAISLTTV 290

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           ++ALC+ G   +A  +++ M   G    PDV TYT LI  +C           +R  + E
Sbjct: 291 VDALCKEGMVAQAHDVVDMMFQSGVE--PDVVTYTALIDGHC-----------LRSEMDE 337

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  +F +M+ KG  P+V +YN LI+G CK  R+++A+ LF++M ++  IPN VTYN+ I 
Sbjct: 338 AVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIH 397

Query: 331 YYSVVNEIDKAIEMMRKM-------------------------------------QNLNH 353
               V  +  AI + R+M                                      NL+ 
Sbjct: 398 GLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLD- 456

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P    YT +I  +C AG + +ARD  + L   G  P  +TY ++   L
Sbjct: 457 --PDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGL 504



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 124/296 (41%), Gaps = 66/296 (22%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T+S T LIK L  EG + EAL  F +M     +PDV  Y  +IN LC+ G+ + A  LL 
Sbjct: 144 TASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLR 203

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGC--------RKAIRRRI------------ 268
            ME     C PDV  Y  LI S CK   QT           K I   I            
Sbjct: 204 SME--KGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCN 261

Query: 269 ---WE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG------- 317
              W+  N L   M+    +P+ ++   ++D  CK   + +A ++ D M + G       
Sbjct: 262 LGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVT 321

Query: 318 ----------------------------CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM- 348
                                       C PN  +YN+ I  Y  +  +DKA+ +  +M 
Sbjct: 322 YTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMC 381

Query: 349 -QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            Q L   +P + +Y  +IH LC  GR+ +A     E+V  G +P   TY+++ D L
Sbjct: 382 RQKL---IPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYL 434



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 105/233 (45%), Gaps = 16/233 (6%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M  F    +VY  NV+IN+ C +   N A  +L ++   G  C PD  ++T LI   C 
Sbjct: 99  KMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLG--CQPDTASFTTLIKGLCL 156

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           +I EA HLF  M+++GF PDVV Y  LI+G CKT     A+ L   M
Sbjct: 157 EG-----------QIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSM 205

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
            K  C P+ V Y + I       +  +A  +  +M  +  G+ P   +   +++ALC  G
Sbjct: 206 EKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEM--ITKGISPNIVTCNSLVYALCNLG 263

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
                   L E+VD   +P   +   V DAL      +   D +    + G+E
Sbjct: 264 EWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVE 316



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 15/197 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI  L   G + +A+A F  M      PD+  Y ++++ LC+  + +KA  LL+
Sbjct: 389 TVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLK 448

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            +E  G    PD+  YTI+I   C+ G            + +A  LF  +  KG  P+V 
Sbjct: 449 AIE--GSNLDPDIQIYTIVIDGMCRAG-----------ELEDARDLFSNLSSKGLKPNVW 495

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN +  G CK   ++ A +LF +M++  C  +  TYN+  + +   NE  +AI+++ +M
Sbjct: 496 TYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEM 555

Query: 349 QNLNHGVPTSSSYTPII 365
             L  G     S T ++
Sbjct: 556 --LARGFSCDVSTTTLL 570



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 4/114 (3%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R   ++   D   ++S +G    V T ++  +   L + GL++EA   F  M +  C  D
Sbjct: 471 RAGELEDARDLFSNLSSKGLKPNVWTYNI--MTHGLCKRGLLDEATKLFMEMDENACSAD 528

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
              YN +     R    ++A  LLE+M   GF C  DV T T+L+      G+ 
Sbjct: 529 GCTYNTITQGFLRNNETSRAIQLLEEMLARGFSC--DVSTTTLLVGMLSDDGLD 580


>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 484

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKEGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 104/250 (41%), Gaps = 22/250 (8%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G            +  A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLISSHCKSG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCI--PNRV------TYNSFIRYYSVVNEID 339
             Y  LI+  CK  + ++A++L D + +K  I  P          YN  I Y     +  
Sbjct: 327 GHYGLLIENFCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAS 386

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           KA  ++R++  L  GV   ++   +I    + G    A + L  ++       +  Y L+
Sbjct: 387 KAETLVRQLMKL--GVQDPTALNTLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNLL 444

Query: 400 CDALNAAEEP 409
             +     EP
Sbjct: 445 VQSYLKKNEP 454


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 138/276 (50%), Gaps = 19/276 (6%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           +GL  F + M R G    V TS+   L+  L +    +     +  M++F   P++Y +N
Sbjct: 206 EGLRSF-RRMLRVGFVPTVITSNY--LLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFN 262

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
           ++ + LC+ G+  K    LE+ME  GF   PD+ TY  LI+SYC+ G           R+
Sbjct: 263 ILTHVLCKDGDTGKVNKFLEKMEEEGF--DPDIVTYNTLINSYCRKG-----------RL 309

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +A +L+++M  +G VPD+V+Y  L++G CK  R+  A +LF  M  +G  P+ VTYN+ 
Sbjct: 310 DDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTL 369

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
           I  Y    ++ ++  ++  M  + +G+ P S +   ++    + G+ L A + + EL   
Sbjct: 370 IHGYCKEGKMQESRSLLHDM--IWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRF 427

Query: 388 GSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           G    +  Y  +  AL     P    + L +  +DG
Sbjct: 428 GVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDG 463



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 121/288 (42%), Gaps = 51/288 (17%)

Query: 152 WDFLKDMSRRGNG-ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           W+  ++M R G    L T + +T ++   G+ G VN+ L    +M++    PD+  YN +
Sbjct: 243 WEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLE---KMEEEGFDPDIVTYNTL 299

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           IN+ CR G  + A +L + M   G    PD+ +YT L++  CK G           R+ E
Sbjct: 300 INSYCRKGRLDDAFYLYKIMYRRGV--VPDLVSYTALMNGLCKEG-----------RVRE 346

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A+ LF  M+ +G  PD+V YN LI G CK  +++ +  L  DM   G  P+  T    + 
Sbjct: 347 AHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVE 406

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV----------------------------------P 356
            Y    +   A+ ++ ++Q     +                                  P
Sbjct: 407 GYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKP 466

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
               Y  +I + C+   + EA     E+VD    P   TY+ V   L+
Sbjct: 467 ELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLS 514



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 112/273 (41%), Gaps = 47/273 (17%)

Query: 188 ALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPP-DVYTY 244
           AL+ F  +K     RP    Y +V++ L    NF++A +FL E +EL     P  DV+  
Sbjct: 117 ALSFFNWVKNDLGLRPSTQNYCIVVHTLAWSRNFSQAMKFLCELVELVKDDLPSEDVFKN 176

Query: 245 TILISSYCKYG--MQTGCRKAIRR--RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
            IL +  C +   +     KA  R  R+ E    FR ML  GFVP V+  N L++G  K 
Sbjct: 177 LILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKL 236

Query: 301 YRIERALELFDDMNKKGCIPNR-----------------------------------VTY 325
              +R  E++++M + G  PN                                    VTY
Sbjct: 237 NYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTY 296

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           N+ I  Y     +D A  + + M      VP   SYT +++ LC+ GRV EA      +V
Sbjct: 297 NTLINSYCRKGRLDDAFYLYKIMYR-RGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMV 355

Query: 386 DGGSVPREYTYKLV----CDALNAAEEPSLLDD 414
             G  P   TY  +    C      E  SLL D
Sbjct: 356 HRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHD 388



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 97/227 (42%), Gaps = 41/227 (18%)

Query: 154 FLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQF--RCRPDVYAYNV 209
            L DM   G    ++  S TC  L++  G+EG    AL     +++F      D+Y+Y +
Sbjct: 385 LLHDMIWNG----ISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLI 440

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK---------------- 253
           V  ALCR      A+ LLE+M   G +  P++  Y  LI S+C+                
Sbjct: 441 V--ALCRENRPFAAKNLLERMSKDGHK--PELEIYNELIKSFCQCDCIAEALLLKMEMVD 496

Query: 254 ---------YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
                    Y    GC   + R + E   L   M+  G +PD+     L  G C+   I+
Sbjct: 497 KEIKPNLATYRAVIGCLSRLSRSM-EGESLVGEMVASGMLPDLEICRALFYGYCRENDID 555

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE---MMRKM 348
           +A  L     K+  I +  ++N+ IR  S   +I +++E   MM KM
Sbjct: 556 KAESLLSFFAKEFQIHDTESFNALIRITSAKGDIARSLEIQDMMLKM 602


>gi|255660866|gb|ACU25602.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 484

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNTITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKEGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGFGIKPNTITYSTLLPGLCNAEKMS 272



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNTITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G               A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLISSHCKSGNPDA-----------AADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI   CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGXLIXNFCKVGQYDKAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L   G
Sbjct: 362 QSTL-HLEP--SAYNPMIEYLCNNGQAXKAETLVRQLXKLG 399


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 105/199 (52%), Gaps = 14/199 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--VPNGVTFTTLIDGHCKNG----- 261

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +   PD++ YN LI G CK   +++A  L D+M+ KG  P
Sbjct: 262 ------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKP 315

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +++TY + I       ++D A E  ++M   N  +    +YT +I  LC+ GR ++A   
Sbjct: 316 DKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD-EVAYTALISGLCQEGRSVDAEKM 374

Query: 381 LAELVDGGSVPREYTYKLV 399
           L E++  G  P   TY ++
Sbjct: 375 LREMLSVGLKPDARTYTMI 393



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 105/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 142 LYFFNILMHRFCKDGDIRLAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 191

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 192 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP 245

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A 
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAH 302

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
             + E+   G  P + TY  + D 
Sbjct: 303 HLIDEMSVKGLKPDKITYTTLIDG 326



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 14/197 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 308

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G +  PD  TYT LI   CK G      +  +R I E   L           D VAY
Sbjct: 309 SVKGLK--PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL-----------DEVAY 355

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ 
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 415

Query: 351 LNHGVPTSSSYTPIIHA 367
             H VP+  +Y  +++ 
Sbjct: 416 DGH-VPSVVTYNVLMNG 431



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 106/243 (43%), Gaps = 30/243 (12%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   +   A +++   + R G  + +      +E  G +   D+Y +
Sbjct: 17  HTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETRGTQ-RSDIYVF 75

Query: 245 TILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GFVPDVVA 289
           + LI++Y + G       C +  R  + W           HL +L  FK   GF  +++ 
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFYEEILE 135

Query: 290 ---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
                    +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  + ++D+
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
              +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G VP   T+  +
Sbjct: 196 GFRLKSAM--LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTL 253

Query: 400 CDA 402
            D 
Sbjct: 254 IDG 256


>gi|15232243|ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g60050
 gi|7076758|emb|CAB75920.1| putative protein [Arabidopsis thaliana]
 gi|332646485|gb|AEE80006.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 473

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 137/333 (41%), Gaps = 29/333 (8%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A  F+ W      F H   +   +  +FA     K +W  + +M +  +G   T  +   
Sbjct: 132 AYRFFLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQ--DGFPTTARTFNL 189

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI   GE GL  +A+  F + K F  RP  ++YN ++N+L  V  +    ++ +QM   G
Sbjct: 190 LICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDG 249

Query: 235 FRCPPDVYTYTILISSYCKYG--------MQTGCRKAIRRRIWEANHLFRL--------- 277
           F   PDV TY IL+ +  + G             R       +  N L  +         
Sbjct: 250 F--SPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLA 307

Query: 278 -------MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
                  M   G  P V+ Y  LIDG  +   +E      D+M K GC P+ V Y   I 
Sbjct: 308 ALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMIT 367

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            Y V  E+DKA EM R+M  +   +P   +Y  +I  LC AG   EA   L E+   G  
Sbjct: 368 GYVVSGELDKAKEMFREM-TVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCN 426

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           P    Y  +   L  A + S     +R+ ++ G
Sbjct: 427 PNFVVYSTLVSYLRKAGKLSEARKVIREMVKKG 459



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 13/181 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+ +LG+      AL T   MK+    P V  Y  +I+ L R GN    ++ L++M   G
Sbjct: 295 LLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAG 354

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PDV  YT++I+ Y   G            + +A  +FR M  KG +P+V  YN +I
Sbjct: 355 --CRPDVVCYTVMITGYVVSG-----------ELDKAKEMFREMTVKGQLPNVFTYNSMI 401

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C       A  L  +M  +GC PN V Y++ + Y     ++ +A +++R+M    H 
Sbjct: 402 RGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKGHY 461

Query: 355 V 355
           V
Sbjct: 462 V 462


>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
 gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
          Length = 735

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 123/286 (43%), Gaps = 16/286 (5%)

Query: 117 EFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLI 176
           EF+ W +R + + H      EM ++ +R          ++ M RRG      T     L+
Sbjct: 111 EFFRWADRQWKYRHAPEVFDEMLVLLSRTRLHDPARRVMRLMIRRGMPR--GTRQFAHLM 168

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
                 G +  A+     M++  C PD+   N+ +N L   G  +KA    E+M   G  
Sbjct: 169 LSYSRAGKLRSAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGV- 227

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
             PDV TY  LI   C             RRI +A  +   ML  G +PD ++Y  ++  
Sbjct: 228 -DPDVVTYNCLIKGLCGA-----------RRIVDALEMISSMLQNGCLPDKISYFTVMSF 275

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            CK  R+     L + M+  G  P++VTYN  I   +     D+A+  +R+ +     V 
Sbjct: 276 LCKEKRVADVQNLLERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRV- 334

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
               Y+  +H+ C  GR+ EA++ + E++  G  P   TY  V D 
Sbjct: 335 DEVGYSATVHSFCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDG 380



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 125/286 (43%), Gaps = 29/286 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           +F + M R G    V T    CLIK L     + +AL     M Q  C PD  +Y  V++
Sbjct: 217 EFAERMRRVGVDPDVVT--YNCLIKGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMS 274

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------ 266
            LC+       + LLE+M   G    PD  TY +LI    K+G        +R       
Sbjct: 275 FLCKEKRVADVQNLLERMSDAGIF--PDQVTYNMLIHGLAKHGHADEALSFLRESEGKRF 332

Query: 267 ------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
                             R+ EA  +   M+ KG  PDVV Y+ ++DG C+   +++A +
Sbjct: 333 RVDEVGYSATVHSFCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARK 392

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           +   M K GC PN VT+ + +     V +  +A E++ K +      P++ +Y+ ++H  
Sbjct: 393 MMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEE-EWWTPSAITYSVVMHGF 451

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
              G++ E+ D + +++  G  P      L+  AL    +P+   D
Sbjct: 452 RREGKLKESCDVVMQMLQKGFFPTTVEINLLIHALCNERKPADAKD 497



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 34/279 (12%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + EA      M    CRPDV  Y+ V++  CR+G  ++AR +++ M   G  C P+  
Sbjct: 350 GRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNG--CKPNTV 407

Query: 243 TYTILISSYCKYGMQTGCRKAIRR---RIWEAN--------HLFR-------------LM 278
           T+T L++  CK G  +   + + +     W  +        H FR              M
Sbjct: 408 THTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQM 467

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           L KGF P  V  N LI   C   +   A +  +    KGC  N V + + I  +S   ++
Sbjct: 468 LQKGFFPTTVEINLLIHALCNERKPADAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDL 527

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           + A+ ++  M  L +  P   +YT ++ AL   G++ EA   + ++++ G  P   TY+ 
Sbjct: 528 ESALSLLDDMY-LTNRHPDVVTYTVVVDALGRKGKMKEATSLVEKMLNRGLHPTPVTYRT 586

Query: 399 V----CDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMK 433
           V    C+     +  +LLD  L K   +G    + QV++
Sbjct: 587 VIHRYCEKGAVEDLLNLLDKMLAK---EGFSSAYNQVIE 622



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  + RLM+ +G       +  L+    +  ++  A+ +   M K GC P+    N  + 
Sbjct: 145 ARRVMRLMIRRGMPRGTRQFAHLMLSYSRAGKLRSAMRVLQLMQKDGCAPDICICNMAVN 204

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
              V   IDKA+E   +M+ +  GV P   +Y  +I  LC A R+++A + ++ ++  G 
Sbjct: 205 VLVVAGRIDKALEFAERMRRV--GVDPDVVTYNCLIKGLCGARRIVDALEMISSMLQNGC 262

Query: 390 VPREYTY----KLVCDALNAAEEPSLLD 413
           +P + +Y      +C     A+  +LL+
Sbjct: 263 LPDKISYFTVMSFLCKEKRVADVQNLLE 290



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 22/253 (8%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNV 209
           W+ L     +   E  T S++T  + + G   EG + E+     +M Q    P     N+
Sbjct: 426 WELLN----KSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQKGFFPTTVEINL 481

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +I+ALC       A+  +EQ +  G  C  +V  +T +I  + + G            + 
Sbjct: 482 LIHALCNERKPADAKDFMEQCQSKG--CFINVVNFTTVIHGFSRQG-----------DLE 528

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            A  L   M      PDVV Y  ++D   +  +++ A  L + M  +G  P  VTY + I
Sbjct: 529 SALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATSLVEKMLNRGLHPTPVTYRTVI 588

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             Y     ++  + ++ KM     G   SS+Y  +I  LC  G++ EA + L++++   S
Sbjct: 589 HRYCEKGAVEDLLNLLDKMLA-KEGF--SSAYNQVIEKLCAFGKLSEANNLLSKVLRTAS 645

Query: 390 VPREYTYKLVCDA 402
                T  ++ D+
Sbjct: 646 KRDAQTCHILMDS 658


>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
 gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
          Length = 682

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 114/211 (54%), Gaps = 20/211 (9%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V +YN+VI+   + G  +KA  ++++M+  GF   P++ T+  LIS Y K G        
Sbjct: 419 VMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFL--PNLVTFNTLISGYSKLG-------- 468

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               +  A  + ++++  GF+PD++ +  LIDG C T++++ A   F++M + G  PN  
Sbjct: 469 ---NVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQ 525

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           TYN  +        ++KAI+++ KM+ ++   P + S+  +I + C   +V +A D   +
Sbjct: 526 TYNVLMHTLCSAGHVNKAIDLLNKMK-IDGVTPDAYSFNALILSFCRMRKVDKAEDIFND 584

Query: 384 LVDGGSVPREYTY----KLVCDA--LNAAEE 408
           +V  G VP  YTY    K +CD   +N A+E
Sbjct: 585 MVRFGVVPDSYTYNSLIKALCDERRVNKAKE 615



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 107/240 (44%), Gaps = 15/240 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V    + +K+M  +G   L    +   LI    + G V+ A      + +    
Sbjct: 429 FVKAGAVDKAEEIVKEMQDKGF--LPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFM 486

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  +  +I+ LC     + A    E+M   G R  P+  TY +L+ + C  G      
Sbjct: 487 PDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVR--PNAQTYNVLMHTLCSAG------ 538

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + +A  L   M   G  PD  ++N LI   C+  ++++A ++F+DM + G +P+
Sbjct: 539 -----HVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPD 593

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TYNS I+       ++KA E++   +        + SY PI+ AL + G+  EA + +
Sbjct: 594 SYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFSEAGELM 653



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 132/331 (39%), Gaps = 34/331 (10%)

Query: 118 FYHWVERFFDFFHNEMTCKE--MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCL 175
            Y W  RF   F  +   +   +G ++ RG  V      + ++  RG G  V+   V  L
Sbjct: 103 LYVWASRFGAHFARDGGVRRALVGALWRRGPVVLS-GRLVAEV--RGCGCEVSEELVCAL 159

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           ++  G  GL   A   F +M +   RP    Y   +            RF     ++P  
Sbjct: 160 VESWGRLGLARYAHEVFVQMPRLGLRPSTAVYTAYL------------RF----QQMPAD 203

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
            C PD +TY  L+   C+ G+           + EA  L R M  +G  P+V  Y  L+D
Sbjct: 204 GCRPDHFTYNSLVHGVCRRGI-----------VDEAVRLVRQMEGEGIRPNVFTYTMLVD 252

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G C   R+E A  + D M +KG  P+  TY + +       E DKA  M+         +
Sbjct: 253 GFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSL 312

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415
             S+ +T +++ L +     EA +F   +   G +     + +V        E S L + 
Sbjct: 313 HPSACHT-MLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMSCALKCLEVSDLCEL 371

Query: 416 LRKRIRDGIEYRFR-QVMKVKPIMKHKELLK 445
           L   I++G    F   +M +K ++  K   K
Sbjct: 372 LDSFIKNGGNPGFDVYIMVIKSLLNCKNFSK 402



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 116/264 (43%), Gaps = 16/264 (6%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+   +  S+   ++  L ++ +  EA+    RM       D  A+ +V++   +    +
Sbjct: 307 GHETSLHPSACHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMSCALKCLEVS 366

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
               LL+     G     DVY   I     CK                +ANH    M+ K
Sbjct: 367 DLCELLDSFIKNGGNPGFDVYIMVIKSLLNCK-------------NFSKANHYLGHMVLK 413

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G +  V++YN +ID   K   +++A E+  +M  KG +PN VT+N+ I  YS +  +  A
Sbjct: 414 GLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNA 473

Query: 342 IEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
             +++ +  + HG +P   ++T +I  LC   ++ +A     E+ + G  P   TY ++ 
Sbjct: 474 KVVLKML--MEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLM 531

Query: 401 DALNAAEEPSLLDDGLRKRIRDGI 424
             L +A   +   D L K   DG+
Sbjct: 532 HTLCSAGHVNKAIDLLNKMKIDGV 555


>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 133/280 (47%), Gaps = 18/280 (6%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDLWV 84

Query: 175 L-IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L I   G+ G+V E++  F +M++      + +Y+ +   + R G +  A+    +M   
Sbjct: 85  LMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ +++  +   G           ++  AN  F  M  +  +PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMMWGFFLSG-----------KVETANRFFEDMKSREIMPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ++G C+  ++E A + F +M  +   P  VTY + I+ Y  V+ +D A+  + +M+    
Sbjct: 192 VNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRFVEEMKGFGM 251

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             P + +Y+ ++  LC A ++ EAR  L E+VD    P +
Sbjct: 252 K-PNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTD 290



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 103/239 (43%), Gaps = 31/239 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDLWV--LMIDSYGKAGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N ++ G   + ++E 
Sbjct: 109 LGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +  +P+ VTYN+ +  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREIMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRI 420
                  RV +A  F+ E+   G  P   TY      +C+A   +E  S+L + + K I
Sbjct: 228 KGYVSVDRVDDALRFVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYI 286



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 92/240 (38%), Gaps = 38/240 (15%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G V  A   F  MK     PDV  YN ++N  CRV    +A      +E+ G    P V 
Sbjct: 164 GKVETANRFFEDMKSREIMPDVVTYNTMVNGYCRVKKMEEAEKYF--VEMKGRNIEPTVV 221

Query: 243 TYTILISSYCK----------------YGMQTGCRKAIR--------RRIWEANHLFRLM 278
           TYT LI  Y                  +GM+                 ++ EA  + + M
Sbjct: 222 TYTTLIKGYVSVDRVDDALRFVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSILKEM 281

Query: 279 LFKGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           + K   P D   +  LI G CK   ++ A  +   M +         Y   I  Y    E
Sbjct: 282 VDKYIAPTDNSIFMRLISGQCKAGDLDAAANVLKAMIRLSVPTEAGHYGVLIENYCKAGE 341

Query: 338 IDKAIEMMRKM---------QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            DKAI+++ K+         Q+  H    SS+Y P+I  LC  G+  +A   + +L+  G
Sbjct: 342 YDKAIKLLDKVIEKDIILRPQSTLH--MESSAYNPLIEYLCNNGQTAKAEALVRQLMKLG 399


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 143/298 (47%), Gaps = 28/298 (9%)

Query: 138 MGIVFARG--NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV--NEALATFY 193
           MG+   RG  N V+ L D +++  R    +LV   S   LI    + G +  N A+    
Sbjct: 261 MGVYARRGRFNKVQELLDLMRE--RGCKPDLV---SFNTLINARLKAGAMMPNLAIELLN 315

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            +++   RPD   YN +I+A  R  N  +A  + + ME     C PD++TY  +IS Y +
Sbjct: 316 EVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDME--AHHCQPDLWTYNAMISVYGR 373

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G+             +A  LF  +  +GF PD V+YN L+    +   +E+  E++++M
Sbjct: 374 CGLSG-----------KAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEM 422

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            K G   + +TYN+ I  Y    + + A+++ R MQ+     P + +YT +I +L +  +
Sbjct: 423 VKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRN-PDAVTYTVLIDSLGKTNK 481

Query: 374 VLEARDFLAELVDGGSVPREYTYK-LVCDALNAA---EEPSLLDDGLRKRIR-DGIEY 426
           + EA   ++E+++ G  P   TY  L+C    A    E     D  LR  IR D + Y
Sbjct: 482 IAEAAGVMSEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAY 539



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 115/250 (46%), Gaps = 18/250 (7%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
           FF + ++   +   FAR  NV+ + +  ++M + G G+   T     +I + G++G    
Sbjct: 392 FFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMT--YNTMIHMYGKQGQNEL 449

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           AL  +  M+     PD   Y V+I++L +     +A  ++ +M   G +  P + TY+ L
Sbjct: 450 ALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVK--PTLKTYSAL 507

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I  Y K G              EA   F  ML  G  PD +AY+ ++D   +    +RA+
Sbjct: 508 ICGYAKAGKPV-----------EAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAM 556

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
            L+ +M   G   +   Y   +R    VN+++    ++R M+ +  G+ T +  + ++  
Sbjct: 557 TLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDMEEIC-GMNTQTISSILVKG 615

Query: 368 LC--EAGRVL 375
            C  EA ++L
Sbjct: 616 ECYDEAAKML 625



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 104/256 (40%), Gaps = 21/256 (8%)

Query: 155  LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
            L+DM     G  ++ SS+  ++      G + E    ++ MK     P ++ Y V+   L
Sbjct: 874  LQDM-----GFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLL 928

Query: 215  CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
             R         +L +ME  GF+  PD+  +  ++  Y         RK I+        +
Sbjct: 929  SRGKQVRDVEAMLSEMEEAGFK--PDLSIWNSVLKMYVAI---EDFRKTIQ--------V 975

Query: 275  FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
            ++ +   G  PD   YN LI   C+ +R E    L  +M   G  P   TY S +  +  
Sbjct: 976  YQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGK 1035

Query: 335  VNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
               +++A E+  ++Q  + G     S Y  ++     +G   +A    + + D G  P  
Sbjct: 1036 QQLVEQAEELFEELQ--SKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTI 1093

Query: 394  YTYKLVCDALNAAEEP 409
             T  L+  +  ++ +P
Sbjct: 1094 ATMHLLMVSYGSSGQP 1109



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 73/182 (40%), Gaps = 13/182 (7%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            L+   G++ LV +A   F  ++   C+ D   Y+ ++      G+ +KA  L   M+  G
Sbjct: 1029 LVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAG 1088

Query: 235  FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                P + T  +L+ SY   G              EA  +   +   G     + Y+ +I
Sbjct: 1089 VE--PTIATMHLLMVSYGSSGQPQ-----------EAEKVLSNLKETGSNLSTLPYSSVI 1135

Query: 295  DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            D   +       ++    M K+G  P+   +  FIR  S+     +AI ++  +Q+    
Sbjct: 1136 DAYLRNGDYNIGIQKLIQMKKEGLEPDHRIWTCFIRAASLSRRTSEAIVLLNALQDAGFD 1195

Query: 355  VP 356
            +P
Sbjct: 1196 LP 1197



 Score = 38.9 bits (89), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI--RYYSVVNEIDKAIEM 344
           V  YN ++    +  R  +  EL D M ++GC P+ V++N+ I  R  +     + AIE+
Sbjct: 254 VQVYNAMMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIEL 313

Query: 345 MRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           + +++    G+ P + +Y  +I A   A  + EA     ++      P  +TY
Sbjct: 314 LNEVR--RSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTY 364


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 122/258 (47%), Gaps = 19/258 (7%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           ++ +S   L+  L +E  + +    +  M + R   ++  +N+ IN LCR G  NKA   
Sbjct: 163 LSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDA 222

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
           +E M+  G    P+V TY  L+  YCK G           ++++A    + ML     P+
Sbjct: 223 IEDMKAWGI--SPNVVTYNTLVDGYCKRGSAG--------KMYKAEAFMKEMLANKICPN 272

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            V +N LIDG CK   +  A + F++M K+G  PN VTYNS I       ++++AI++  
Sbjct: 273 EVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWD 332

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL--- 403
           KM  L    P   +Y  +I+  C+   + EA     ++     VP   T+  + DA    
Sbjct: 333 KMVGLGLK-PNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKE 391

Query: 404 NAAEE-----PSLLDDGL 416
              EE      S+LD+G+
Sbjct: 392 GMMEEGFSLCSSMLDEGI 409



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 111/225 (49%), Gaps = 16/225 (7%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           G  G + +A A    M   +  P+   +N +I+  C+  N   A+   E+M+  G +  P
Sbjct: 249 GSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLK--P 306

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           ++ TY  LI+  C  G           ++ EA  L+  M+  G  P++V YN LI+G CK
Sbjct: 307 NIVTYNSLINGLCNNG-----------KLEEAIDLWDKMVGLGLKPNIVTYNALINGFCK 355

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTS 358
              ++ A ++FDD++K+  +PN +T+N+ I  Y     +++   +   M  L+ G+ P  
Sbjct: 356 KKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSM--LDEGILPNV 413

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           S+Y  +I  LC    +  A++ L E+ + G      TY ++ D L
Sbjct: 414 STYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGL 458



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 131/297 (44%), Gaps = 37/297 (12%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEAL 189
           NE+T   +   F +  NV       ++M ++G    +VT +S   LI  L   G + EA+
Sbjct: 272 NEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNS---LINGLCNNGKLEEAI 328

Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
             + +M     +P++  YN +IN  C+     +A  + +  ++      P+V T+  +I 
Sbjct: 329 DLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFD--DVSKQELVPNVITFNTMID 386

Query: 250 SYCKYGM-QTG--------------------------CRKAIRRRIWEANHLFRLMLFKG 282
           +YCK GM + G                          CRK   + +  A  L   M  KG
Sbjct: 387 AYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRK---QDLQAAKELLNEMENKG 443

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
              DVV YN LIDG CK  +   A +L ++M   G  PN VTYN+ +  Y +  ++  A+
Sbjct: 444 LKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAAL 503

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +  +M+      P   +Y  +I   C+  ++  A   L E+++ G  P   TY +V
Sbjct: 504 NVRTRMEK-ERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV 559



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 18/220 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V  A   F  M++   +P++  YN +IN LC  G   +A  L ++M   G    P++ TY
Sbjct: 289 VAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKM--VGLGLKPNIVTY 346

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI+ +CK           ++ + EA  +F  +  +  VP+V+ +N +ID  CK   +E
Sbjct: 347 NALINGFCK-----------KKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMME 395

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYT 362
               L   M  +G +PN  TYN  I       ++  A E++ +M+N  L   V T   Y 
Sbjct: 396 EGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVT---YN 452

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +I  LC+  +   A   L E+ + G  P   TY  + D 
Sbjct: 453 ILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDG 492



 Score = 39.7 bits (91), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 39/164 (23%)

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             +I +  ++++ M+ +    ++  +N  I+G C+  ++ +A +  +DM   G  PN VT
Sbjct: 178 ENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVT 237

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE---AGRVLEARDFL 381
           YN+                                    ++   C+   AG++ +A  F+
Sbjct: 238 YNT------------------------------------LVDGYCKRGSAGKMYKAEAFM 261

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
            E++     P E T+  + D     E  +       +  + G++
Sbjct: 262 KEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLK 305


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 130/270 (48%), Gaps = 17/270 (6%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
           F++W     +F H+     EM  +  +       W  + D+ +  N E +   + T L++
Sbjct: 132 FFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLI-DLMKTRNVE-IPVETFTILVR 189

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
              + GL  EA+  F RM+ + C+PD  A++VVI++L +     +A+   + ++    R 
Sbjct: 190 RYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLK---DRF 246

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            PDV  YT L+  +C+ G            I EA  +F  M   G  P+V  Y+ +ID  
Sbjct: 247 EPDVVVYTSLVHGWCRAG-----------NISEAERVFGEMKMAGIQPNVYTYSIVIDAL 295

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           C++ +I RA ++F +M   GC PN +T+N+ +R +      +K +++  +M+ L    P 
Sbjct: 296 CRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLG-CPPD 354

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDG 387
           + +Y  +I + C    + EA   L  +  G
Sbjct: 355 AITYNFLIESHCRDDNLEEAVKILNSVKKG 384



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 4/134 (2%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L  LM  +     V  +  L+    K      A+  F+ M   GC P+++ ++  I 
Sbjct: 165 AWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVI- 223

Query: 331 YYSVVNEIDKAIEMMRKMQNL-NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             S +++  +AIE      +L +   P    YT ++H  C AG + EA     E+   G 
Sbjct: 224 --SSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGI 281

Query: 390 VPREYTYKLVCDAL 403
            P  YTY +V DAL
Sbjct: 282 QPNVYTYSIVIDAL 295



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 12/153 (7%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           +  SS   +   + + G VN A   F +MK  +CRP+   YN+++       + +    L
Sbjct: 387 LNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKL 446

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
            ++M+       P+  TY +LIS++C  G         +  I E          K   P 
Sbjct: 447 RKEMDENEIE--PNANTYRVLISTFCGIGHWNNAYSFFKEMIEE----------KCLRPS 494

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           +  Y  ++    K  ++++  EL + M  +G +
Sbjct: 495 LPVYEMVLQQLRKAGQLKKHEELVEKMVNRGFV 527


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 98/188 (52%), Gaps = 16/188 (8%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+   YN+ I  LC+ G  + AR     + L GF   PD +TY  LI  Y   G      
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGF--VPDNFTYCTLIHGYSAAG------ 763

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + EA  L   ML +G VP++V YN LI+G CK+  ++RA  LF  +++KG  PN
Sbjct: 764 -----NVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPN 818

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            VTYN+ I  Y  +  +D A ++  KM  +  G+ P+  +Y+ +I+ LC+ G +  +   
Sbjct: 819 VVTYNTLIDGYCKIGNMDAAFKLKDKM--IEEGISPSVVTYSALINGLCKHGDIERSMKL 876

Query: 381 LAELVDGG 388
           L +++  G
Sbjct: 877 LNQMIKAG 884



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 13/232 (5%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           V+ ++    ++G V+EA     +M+     P++  Y+ +IN    +G+   A+ +L+ M 
Sbjct: 229 VSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMS 288

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G     +V TYT+LI  YCK        K +R    EA            VPD  AY 
Sbjct: 289 EKGV--SRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEA----------ALVPDERAYG 336

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            LIDG C+T +I+ A+ L D+M + G   N    NS I  Y    EI +A  ++ +M + 
Sbjct: 337 VLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDW 396

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           N   P S SY  ++   C  G   EA +   +++  G  P   TY  +   L
Sbjct: 397 NLK-PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGL 447



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 33/287 (11%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
           + R   +      L +M R G    + T+   C  LI    + G ++EA     RM  + 
Sbjct: 342 YCRTGKIDDAVRLLDEMLRLG----LKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWN 397

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG---- 255
            +PD Y+YN +++  CR G+ ++A  L ++M   G    P V TY  L+   C+ G    
Sbjct: 398 LKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE--PTVLTYNTLLKGLCRVGAFDD 455

Query: 256 --------MQTGCR-----------KAIRRRIWE-ANHLFRLMLFKGFVPDVVAYNCLID 295
                   M+ G                +   +E A+ L++ +L +GF    + +N +I 
Sbjct: 456 ALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMIS 515

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G CK  ++  A E+FD M   GC P+ +TY + I  Y   + + +A ++   M+      
Sbjct: 516 GLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMER-EXIS 574

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           P+   Y  +I  L ++ R++E  D L E+   G  P   TY  + D 
Sbjct: 575 PSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDG 621



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 124/308 (40%), Gaps = 57/308 (18%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           N +G     KD+  RG     T S +T   +I  L + G + EA   F +MK   C PD 
Sbjct: 487 NFEGASTLWKDILARG----FTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDG 542

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             Y  +I+  C+  N  +A  +   ME       P +  Y  LIS   K           
Sbjct: 543 ITYRTLIDGYCKASNVGQAFKVKGAMEREXI--SPSIEMYNSLISGLFK----------- 589

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
            RR+ E   L   M  +G  P++V Y  LIDG CK   +++A   + +M + G   N + 
Sbjct: 590 SRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIII 649

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHG------------------------------ 354
            ++ +     +  ID+A  +M+KM  ++HG                              
Sbjct: 650 CSTMVSGLYRLGRIDEANLLMQKM--VDHGFFPDHECFLKSDIRYAAIQKIADSLDESCK 707

Query: 355 ---VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
              +P +  Y   I  LC+ G+V +AR F + L   G VP  +TY   C  ++       
Sbjct: 708 TFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTY---CTLIHGYSAAGN 764

Query: 412 LDDGLRKR 419
           +D+  R R
Sbjct: 765 VDEAFRLR 772



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 21/246 (8%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           RGN +   WD L  + R    E   + +V   ++KV  E+GL   AL  F  M +    P
Sbjct: 137 RGNVI---WDELVGVYR----EFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIP 189

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
            + + N ++N L + G  + A ++ +QM   G    PDV+  +I+++++CK G       
Sbjct: 190 SLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGI--VPDVFMVSIMVNAFCKDG------- 240

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               ++ EA    + M   G  P++V Y+ LI+G      +E A  +   M++KG   N 
Sbjct: 241 ----KVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNV 296

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           VTY   I+ Y    ++D+A +++R MQ     VP   +Y  +I   C  G++ +A   L 
Sbjct: 297 VTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLD 356

Query: 383 ELVDGG 388
           E++  G
Sbjct: 357 EMLRLG 362



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 125/291 (42%), Gaps = 50/291 (17%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR-PDVY 205
           +V+     LK MS +G    V T   T LIK   ++  ++EA      M++     PD  
Sbjct: 276 DVEAAKGVLKFMSEKGVSRNVVT--YTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDER 333

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           AY V+I+  CR G  + A  LL++M   G +   +++    LI+ YCK G          
Sbjct: 334 AYGVLIDGYCRTGKIDDAVRLLDEMLRLGLK--TNLFICNSLINGYCKRG---------- 381

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             I EA  +   M+     PD  +YN L+DG C+      A  L D M ++G  P  +TY
Sbjct: 382 -EIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTY 440

Query: 326 NSFIRYYSVVNEIDKAIE----MMR------------------KMQN-----------LN 352
           N+ ++    V   D A++    MM+                  KM+N           L 
Sbjct: 441 NTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILA 500

Query: 353 HGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            G   S  ++  +I  LC+ G+++EA +   ++ D G  P   TY+ + D 
Sbjct: 501 RGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDG 551



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 13/156 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI      G V+EA      M +    P++  YN +IN LC+  N ++A+ L  ++   G
Sbjct: 755 LIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKG 814

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V TY  LI  YCK G      K   + I E           G  P VV Y+ LI
Sbjct: 815 LF--PNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEE-----------GISPSVVTYSALI 861

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           +G CK   IER+++L + M K G     + Y + ++
Sbjct: 862 NGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQ 897



 Score = 39.3 bits (90), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 32/202 (15%)

Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
           KQ   RP+V +Y  +++ L R   +++ R  L Q+                     CK+ 
Sbjct: 94  KQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQL------------------VDLCKF- 134

Query: 256 MQTGCRKAIRRRIW-EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                 K     IW E   ++R   F   V D++    +  G  K      AL +FD+M 
Sbjct: 135 ------KDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKN-----ALYVFDNMG 183

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           K G IP+  + NS +       E   A  + ++M  +   VP     + +++A C+ G+V
Sbjct: 184 KCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGI-VPDVFMVSIMVNAFCKDGKV 242

Query: 375 LEARDFLAELVDGGSVPREYTY 396
            EA  F+ ++ + G  P   TY
Sbjct: 243 DEAAGFVKKMENLGVEPNIVTY 264


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 121/255 (47%), Gaps = 19/255 (7%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ-FRCR-PDVYAYNV 209
           +  L  M++RG G  V   ++  ++K     G  ++A++ F +MK+ + C  PD   YN 
Sbjct: 97  FSVLSLMTKRGFG--VNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNT 154

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           ++N  C+     +AR L E M+  G  C P++ TY++LI  YCK G            + 
Sbjct: 155 LVNGFCKAKRLAEARVLFEAMK-KGGDCRPNLVTYSVLIDCYCKSG-----------EVG 202

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           E   L   M  +G   DV  Y+ LI   C    IE   ELFD+M ++   PN VTY+  +
Sbjct: 203 EGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLM 262

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +         +A EM++ M     GV P   +YT +   LC+ GR  +A   L  +V  G
Sbjct: 263 QGLGRTGRWREASEMLKDMT--ARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKG 320

Query: 389 SVPREYTYKLVCDAL 403
             P   TY +V + L
Sbjct: 321 EEPGTLTYNVVVNGL 335



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 111/222 (50%), Gaps = 34/222 (15%)

Query: 187 EALATFYRMKQF-RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           EA   F  MK+   CRP++  Y+V+I+  C+ G   +   LLE+ME  G +   DV+ Y+
Sbjct: 167 EARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLK--ADVFVYS 224

Query: 246 ILISSYCKYG-MQTGCR---KAIRRRI-------------------W-EANHLFRLMLFK 281
            LIS++C  G ++TG     + +RR++                   W EA+ + + M  +
Sbjct: 225 SLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTAR 284

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G  PDVVAY  L DG CK  R   A+++ D M +KG  P  +TYN  +      + +D A
Sbjct: 285 GVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDA 344

Query: 342 ---IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
              +EMM K        P + +Y  ++  LC AG++ EA D 
Sbjct: 345 FGVVEMMVKKGK----KPDAVTYNTLLKGLCGAGKIHEAMDL 382



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 120/255 (47%), Gaps = 18/255 (7%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            L++M R G   ++   SS   LI     EG +      F  M + +  P+V  Y+ ++ 
Sbjct: 207 LLEEMEREGLKADVFVYSS---LISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQ 263

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            L R G + +A  +L+ M   G R  PDV  YT+L    CK G           R  +A 
Sbjct: 264 GLGRTGRWREASEMLKDMTARGVR--PDVVAYTVLADGLCKNG-----------RAGDAI 310

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +  LM+ KG  P  + YN +++G CK  R++ A  + + M KKG  P+ VTYN+ ++  
Sbjct: 311 KVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGL 370

Query: 333 SVVNEIDKAIEMMRKMQNLN-HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
               +I +A+++ + + +   H  P   +   +I  LC+ GRV +A    + +V+ G   
Sbjct: 371 CGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQG 430

Query: 392 REYTYKLVCDALNAA 406
              TY  + +   AA
Sbjct: 431 NIVTYNFLIEGYLAA 445



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 125/277 (45%), Gaps = 28/277 (10%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           GE   T +   ++  L +E  +++A      M +   +PD   YN ++  LC  G  ++A
Sbjct: 320 GEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEA 379

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAI------- 264
             L + +    F   PDV+T   LI   CK G            ++ G +  I       
Sbjct: 380 MDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLI 439

Query: 265 -----RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                 R++ EA  L++  +  GF P+ + Y+ +I+G CK   +  A  LF  M   G  
Sbjct: 440 EGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIR 499

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P  + YN+ +      + +++A  + ++M+N+NH V    S+  II    +AG V  A++
Sbjct: 500 PTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDV-VSFNIIIDGTLKAGDVKSAKE 558

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
            L+E+     VP   T+ ++   +N   +  +LD+ +
Sbjct: 559 LLSEMFMMDLVPDAVTFSIL---INRFSKLGMLDEAM 592



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 14/200 (7%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EAL  +    +    P+   Y+V+IN LC++   + AR L  +M+  G R  P V  Y  
Sbjct: 450 EALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIR--PTVIDYNA 507

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           L++S C+              + +A  LF+ M       DVV++N +IDG  K   ++ A
Sbjct: 508 LMTSLCR-----------EDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSA 556

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
            EL  +M     +P+ VT++  I  +S +  +D+A+ +  KM +  H VP    +  ++ 
Sbjct: 557 KELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGH-VPGVVVFDSLLK 615

Query: 367 ALCEAGRVLEARDFLAELVD 386
                G   +    L ++ D
Sbjct: 616 GYGLKGETEKIISLLHQMAD 635



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 104/244 (42%), Gaps = 23/244 (9%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           +  ++ +++M      P   + + +  +     + + A  +L  M   GF    +VY   
Sbjct: 59  DAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGV--NVYNLN 116

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML--FKGFVPDVVAYNCLIDGCCKTYRI 303
           +++  +C+ G    C KA+         LF  M   +   VPD V YN L++G CK  R+
Sbjct: 117 LVLKGFCRSGQ---CDKAMS--------LFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRL 165

Query: 304 ERALELFDDMNKKG-CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SY 361
             A  LF+ M K G C PN VTY+  I  Y    E+ + + ++ +M+    G+      Y
Sbjct: 166 AEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEME--REGLKADVFVY 223

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA----EEPSLLDDGLR 417
           + +I A C  G +   R+   E++     P   TY  +   L       E   +L D   
Sbjct: 224 SSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTA 283

Query: 418 KRIR 421
           + +R
Sbjct: 284 RGVR 287


>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 484

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKEGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 104/250 (41%), Gaps = 22/250 (8%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D      LISS+CK G            +  A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIIMRLISSHCKSG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCI--PNRV------TYNSFIRYYSVVNEID 339
             Y  LI+  CK  + ++A++L D + +K  I  P          YNS I Y     +  
Sbjct: 327 GHYGLLIENFCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNSMIEYLCNNGQAS 386

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           KA  ++R++  L  GV   ++   +I    + G    A + L  ++       +  Y L+
Sbjct: 387 KAETLVRQLMKL--GVQDPTALNTLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNLL 444

Query: 400 CDALNAAEEP 409
             +     EP
Sbjct: 445 VQSYLKKNEP 454


>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 484

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKEGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 108/271 (39%), Gaps = 41/271 (15%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQM--------------ELPGFRC--------------------PPDVYTYTILISSYCK 253
           ++M               L    C                    P +   Y ILI ++CK
Sbjct: 279 KEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGILIENFCK 338

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G      K + + I E + + R        P   AYN +I+  C   +  +A  L   +
Sbjct: 339 AGQYDKAVKLLDKLI-EKDIILRPQSTLHLEPS--AYNLMIEYLCNNGQASKAETLVRQL 395

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAG 372
            K G + +    N+ IR +S     D A E+++ M  L   V +  S+Y  ++ +  +  
Sbjct: 396 MKLG-VQDPTALNTLIRGHSQEGSPDSAFELLKIM--LRRKVDSEKSAYNSLVQSYLKKN 452

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              +A+  L  +++   +P    ++ V ++L
Sbjct: 453 EPXDAKAALDSMIENDHLPDSALFRSVMESL 483


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 125/259 (48%), Gaps = 16/259 (6%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           +GI F + + V+   D +K+M  +G    +T  + T  IK LG+ G V++A   F  M +
Sbjct: 276 LGIYF-KLDKVEKALDVIKEMKDKGC--TLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIK 332

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
             C+PDV   N +IN L +VG       L  +ME   ++C P+V TY  +I +  +    
Sbjct: 333 DGCKPDVVLINSLINILGKVGRLEVTLKLFRKME--SWQCKPNVVTYNTVIKALFE---- 386

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
             C+        EA   F  M   G  P    Y+ LIDG CKT RIE+AL L ++M++KG
Sbjct: 387 --CKAPAS----EAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKG 440

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P    Y S I     V   + A E+  +++  N G  ++  Y  +I    + GR+ EA
Sbjct: 441 FPPCPAAYCSLINSLGKVKRYEAANELFLELKE-NCGHSSARVYAVMIKHFGKCGRLSEA 499

Query: 378 RDFLAELVDGGSVPREYTY 396
            D   E+   GS P  Y Y
Sbjct: 500 VDLFNEMEKLGSKPDVYAY 518



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 120/297 (40%), Gaps = 63/297 (21%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL----------------- 214
           +  LI +LG+ G +   L  F +M+ ++C+P+V  YN VI AL                 
Sbjct: 342 INSLINILGKVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKM 401

Query: 215 -------------------CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
                              C+     KA  LLE+M+  GF  PP    Y  LI+S  K  
Sbjct: 402 KGCGIAPSSFTYSILIDGFCKTNRIEKALLLLEEMDEKGF--PPCPAAYCSLINSLGKVK 459

Query: 256 -----------MQTGCRKAIRR-------------RIWEANHLFRLMLFKGFVPDVVAYN 291
                      ++  C  +  R             R+ EA  LF  M   G  PDV AYN
Sbjct: 460 RYEAANELFLELKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYN 519

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L+ G  +   I+ A  L   M++ GC P+  ++N  +   +     D+AIEM  KM++ 
Sbjct: 520 ALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKS- 578

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           +   P + SY  ++  L  AG   EA   + E+   G      TY  + +A+   +E
Sbjct: 579 SIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREMNLKGFEYNNITYTSILEAVGKVDE 635



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 125/285 (43%), Gaps = 49/285 (17%)

Query: 107 KVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL 166
           K+ + +N   +F+ W  +  +F H+  +   +            +W  ++DM R     +
Sbjct: 102 KIDVEINVKIQFFKWAGKRRNFEHDSSSFMALIHSLDEAGFYGEMWKTIQDMVRSSTC-V 160

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           +++  ++ ++K+LG+  +VN+AL+ FY++K  +C+P    YN +I  L + G+  K   +
Sbjct: 161 ISSVYLSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEI 220

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
             +M                     C  G    C                        PD
Sbjct: 221 YNEM---------------------CNDG---NC-----------------------FPD 233

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            V Y+ LI    K    + A+ LFD+M + G  P    Y + +  Y  +++++KA+++++
Sbjct: 234 TVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIK 293

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           +M++    + T  +YT  I  L +AGRV +A     +++  G  P
Sbjct: 294 EMKDKGCTL-TVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKP 337



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 8/143 (5%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDM-NKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           P    YN +I    +   +E+  E++++M N   C P+ VTY++ I  +  +   D AI 
Sbjct: 196 PAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDSAIR 255

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  +M+  N   PT+  YT ++    +  +V +A D + E+ D G     +TY      L
Sbjct: 256 LFDEMKE-NGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTEWIKGL 314

Query: 404 NAAEEPSLLDDGLR---KRIRDG 423
             A     +DD  R     I+DG
Sbjct: 315 GKA---GRVDDAYRVFLDMIKDG 334



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 38/81 (46%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG     +S   ++  L   G+ + A+  F +MK    +PD  +YN V+  L   G F +
Sbjct: 544 NGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEE 603

Query: 223 ARFLLEQMELPGFRCPPDVYT 243
           A  L+ +M L GF      YT
Sbjct: 604 AAKLMREMNLKGFEYNNITYT 624



 Score = 41.2 bits (95), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 42/98 (42%)

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K   + +AL +F  +  + C P   TYNS I        ++K  E+  +M N  +  P +
Sbjct: 175 KAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDT 234

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +Y+ +I A  + G    A     E+ + G  P    Y
Sbjct: 235 VTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIY 272


>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 484

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKEGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G            +  A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLISSHCKSG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGXLIENFCKXGQYDKAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L   G
Sbjct: 362 QSTL-HLEP--SAYNPMIEYLCNNGQXXKAETLVRQLXKLG 399


>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 484

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKEGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 22/213 (10%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G            +  A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFLRLISSHCKSG-----------NLDAAVDVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCI--PNRV------TYNSFIRYYSVVNEID 339
             Y  LI+  CK  + ++A++L D + +K  I  P          YN  I Y     +  
Sbjct: 327 GHYGLLIENFCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPSAYNPMIEYLCNNGQAS 386

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           KA  ++R++  L  GV   ++   +I    + G
Sbjct: 387 KAETLVRQLMKL--GVQDPTALNTLIRGHSQEG 417


>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
          Length = 696

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 114/211 (54%), Gaps = 20/211 (9%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V +YN+VI+   + G  +KA  ++++M+  GF   P++ T+  LIS Y K G        
Sbjct: 433 VMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFL--PNLVTFNTLISGYSKLG-------- 482

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               +  A  + ++++  GF+PD++ +  LIDG C T++++ A   F++M + G  PN  
Sbjct: 483 ---NVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQ 539

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           TYN  +        ++KAI+++ KM+ ++   P + S+  +I + C   +V +A D   +
Sbjct: 540 TYNVLMHTLCSAGHVNKAIDLLNKMK-IDGVTPDAYSFNALILSFCRMRKVDKAEDIFND 598

Query: 384 LVDGGSVPREYTY----KLVCDA--LNAAEE 408
           +V  G VP  YTY    K +CD   +N A+E
Sbjct: 599 MVRFGVVPDSYTYNSLIKALCDERRVNKAKE 629



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 138/331 (41%), Gaps = 20/331 (6%)

Query: 118 FYHWVERFFDFFHNEMTCKE--MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCL 175
            Y W  RF   F  +   +   +G ++ RG  V      + ++  RG G  V+   V  L
Sbjct: 103 LYVWASRFGAHFARDGGVRRALVGALWRRGPVVLS-GRLVAEV--RGCGCEVSEELVCAL 159

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           ++  G  GL   A   F +M +   RP    YN +I A  R G  + A    +QM  P  
Sbjct: 160 VESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQM--PAD 217

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
            C PD +TY  L+   C+ G+           + EA  L R M  +G  P+V  Y  L+D
Sbjct: 218 GCRPDRFTYNSLVHGVCRRGI-----------VDEAVRLVRQMEGEGIRPNVFTYTMLVD 266

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G C   R+E A  + D M +KG  P+  TY + +       E DKA  M+         +
Sbjct: 267 GFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSL 326

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415
             S+ +T +++ L +     EA +F   +   G +     + +V        E S L + 
Sbjct: 327 HPSACHT-MLYCLSKKDMAKEAVEFAKRMSARGYLLDSTAFGIVMSCSLKCLEVSDLCEL 385

Query: 416 LRKRIRDGIEYRFR-QVMKVKPIMKHKELLK 445
           L   I++G    F   +M +K ++  K   K
Sbjct: 386 LDSFIKNGGNPGFDVYIMVIKSLLNCKNFSK 416



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 107/240 (44%), Gaps = 15/240 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V    + +K+M  +G   L    +   LI    + G V+ A      + +    
Sbjct: 443 FVKAGAVDKAEEIVKEMQDKGF--LPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFM 500

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  +  +I+ LC     + A    E+M   G R  P+  TY +L+ + C  G      
Sbjct: 501 PDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVR--PNAQTYNVLMHTLCSAG------ 552

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + +A  L   M   G  PD  ++N LI   C+  ++++A ++F+DM + G +P+
Sbjct: 553 -----HVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPD 607

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TYNS I+       ++KA E++   +        + SY PI+ AL + G+  EA + +
Sbjct: 608 SYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFSEAGELM 667



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 113/256 (44%), Gaps = 16/256 (6%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           S+   ++  L ++ +  EA+    RM       D  A+ +V++   +    +    LL+ 
Sbjct: 329 SACHTMLYCLSKKDMAKEAVEFAKRMSARGYLLDSTAFGIVMSCSLKCLEVSDLCELLDS 388

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
               G     DVY   I     CK                +ANH    M+ KG +  V++
Sbjct: 389 FIKNGGNPGFDVYIMVIKSLLNCK-------------NFSKANHYLGHMVLKGLLSSVMS 435

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN +ID   K   +++A E+  +M  KG +PN VT+N+ I  YS +  +  A  +++ + 
Sbjct: 436 YNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKML- 494

Query: 350 NLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            + HG +P   ++T +I  LC   ++ +A     E+ + G  P   TY ++   L +A  
Sbjct: 495 -MEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGH 553

Query: 409 PSLLDDGLRKRIRDGI 424
            +   D L K   DG+
Sbjct: 554 VNKAIDLLNKMKIDGV 569


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           EG + +A      M+    +P+V +YN +I+     GN   AR +L+ M + G    PD 
Sbjct: 186 EGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIE--PDS 243

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
           YTY  LIS  CK G           R+ EA+ LF  M+  G VP+ V YN LIDG C   
Sbjct: 244 YTYGSLISGMCKEG-----------RLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKG 292

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
            +ERA    D+M KKG +P+  TYN  +    +   + +A +M+++M+     +P + +Y
Sbjct: 293 DLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRK-KGIIPDAITY 351

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
             +I+     G    A D   E++  G  P   TY  +   L+        DD   K + 
Sbjct: 352 NILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILD 411

Query: 422 DGI 424
            G+
Sbjct: 412 QGV 414



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 123/262 (46%), Gaps = 16/262 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + + S+   L+  L  EG + EA      M++    PD   YN++IN   R GN  +A
Sbjct: 308 GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRA 367

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L  +M   G    P   TYT LI    +           R R+ EA+ LF  +L +G 
Sbjct: 368 FDLHNEMLSKGIE--PTHVTYTSLIYVLSR-----------RNRMKEADDLFEKILDQGV 414

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PDV+ +N +IDG C    +ERA  L  +M++K   P+ VT+N+ ++      ++++A  
Sbjct: 415 SPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARM 474

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           ++ +M+    G+ P   SY  +I      G + +A     E++  G  P   TY  +   
Sbjct: 475 LLDEMK--XRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKC 532

Query: 403 LNAAEEPSLLDDGLRKRIRDGI 424
           L   +E  L ++ L++ +  GI
Sbjct: 533 LCKNQEGDLAEELLKEMVNKGI 554



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 142/323 (43%), Gaps = 28/323 (8%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           L KA EF  ++E    F  N ++   +   ++   N++G    L  M  +G    +   S
Sbjct: 189 LKKAREFIGFMEGL-GFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKG----IEPDS 243

Query: 172 VT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
            T   LI  + +EG + EA   F +M +    P+   YN +I+  C  G+  +A    ++
Sbjct: 244 YTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDE 303

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M   G    P V TY +L+ +    G           R+ EA+ + + M  KG +PD + 
Sbjct: 304 MVKKGIM--PSVSTYNLLVHALFMEG-----------RMGEADDMIKEMRKKGIIPDAIT 350

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN LI+G  +    +RA +L ++M  KG  P  VTY S I   S  N + +A ++  K+ 
Sbjct: 351 YNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKI- 409

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALN 404
            L+ GV P    +  +I   C  G V  A   L E+      P E T+  +    C    
Sbjct: 410 -LDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGK 468

Query: 405 AAEEPSLLDDGLRKRIR-DGIEY 426
             E   LLD+   + I+ D I Y
Sbjct: 469 VEEARMLLDEMKXRGIKPDHISY 491



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 93/227 (40%), Gaps = 26/227 (11%)

Query: 122 VERFFDFFHNEMTCK----------EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
            +R FD  HNEM  K           +  V +R N +K   D  + +  +G    V    
Sbjct: 364 AKRAFDL-HNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIM-- 420

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              +I      G V  A      M +    PD   +N ++   CR G   +AR LL++M+
Sbjct: 421 FNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMK 480

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G +  PD  +Y  LIS Y + G            I +A  +   ML  GF P ++ YN
Sbjct: 481 XRGIK--PDHISYNTLISGYGRRG-----------DIKDAFXVRDEMLSIGFNPTLLTYN 527

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
            LI   CK    + A EL  +M  KG  P+  TY S I     V+ +
Sbjct: 528 ALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTL 574


>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 696

 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 114/211 (54%), Gaps = 20/211 (9%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V +YN+VI+   + G  +KA  ++++M+  GF   P++ T+  LIS Y K G        
Sbjct: 433 VMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFL--PNLVTFNTLISGYSKLG-------- 482

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               +  A  + ++++  GF+PD++ +  LIDG C T++++ A   F++M + G  PN  
Sbjct: 483 ---NVHNAKVVLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQ 539

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           TYN  +        ++KAI+++ KM+ ++   P + S+  +I + C   +V +A D   +
Sbjct: 540 TYNVLMHTLCSAGHVNKAIDLLNKMK-IDGVTPDAYSFNALILSFCRMRKVDKAEDIFND 598

Query: 384 LVDGGSVPREYTY----KLVCDA--LNAAEE 408
           +V  G VP  YTY    K +CD   +N A+E
Sbjct: 599 MVRFGVVPDSYTYNSLIKALCDERRVNKAKE 629



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 138/331 (41%), Gaps = 20/331 (6%)

Query: 118 FYHWVERFFDFFHNEMTCKE--MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCL 175
            Y W  RF   F  +   +   +G ++ RG  V      + ++  RG G  V+   V  L
Sbjct: 103 LYVWASRFGAHFARDGGVRRALVGALWRRGPVVLS-GRLVAEV--RGCGCEVSEELVCAL 159

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           ++  G  GL   A   F +M +   RP    YN +I A  R G  + A    +QM  P  
Sbjct: 160 VESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDTAYLRFQQM--PAD 217

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
            C PD +TY  L+   C+ G+           + EA  L R M  +G  P+V  Y  L+D
Sbjct: 218 GCRPDHFTYNSLVHGVCRRGI-----------VDEAVRLVRQMEGEGIRPNVFTYTMLVD 266

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G C   R+E A  + D M +KG  P+  TY + +       E DKA  M+         +
Sbjct: 267 GFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLSDWLGHETSL 326

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415
             S+ +T +++ L +     EA +F   +   G +     + +V        E S L + 
Sbjct: 327 HPSACHT-MLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMSCALKCLEVSDLCEL 385

Query: 416 LRKRIRDGIEYRFR-QVMKVKPIMKHKELLK 445
           L   I++G    F   +M +K ++  K   K
Sbjct: 386 LDSFIKNGGNPGFDVYIMVIKSLLNCKNFSK 416



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 107/240 (44%), Gaps = 15/240 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V    + +K+M  +G   L    +   LI    + G V+ A      + +    
Sbjct: 443 FVKAGAVDKAEEIVKEMQDKGF--LPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFM 500

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  +  +I+ LC     + A    E+M   G R  P+  TY +L+ + C  G      
Sbjct: 501 PDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVR--PNAQTYNVLMHTLCSAG------ 552

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + +A  L   M   G  PD  ++N LI   C+  ++++A ++F+DM + G +P+
Sbjct: 553 -----HVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPD 607

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TYNS I+       ++KA E++   +        + SY PI+ AL + G+  EA + +
Sbjct: 608 SYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFSEAGELM 667



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 113/256 (44%), Gaps = 16/256 (6%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           S+   ++  L ++ +  EA+    RM       D  A+ +V++   +    +    LL+ 
Sbjct: 329 SACHTMLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMSCALKCLEVSDLCELLDS 388

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
               G     DVY   I     CK                +ANH    M+ KG +  V++
Sbjct: 389 FIKNGGNPGFDVYIMVIKSLLNCK-------------NFSKANHYLGHMVLKGLLSSVMS 435

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN +ID   K   +++A E+  +M  KG +PN VT+N+ I  YS +  +  A  +++ + 
Sbjct: 436 YNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKML- 494

Query: 350 NLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            + HG +P   ++T +I  LC   ++ +A     E+ + G  P   TY ++   L +A  
Sbjct: 495 -MEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGH 553

Query: 409 PSLLDDGLRKRIRDGI 424
            +   D L K   DG+
Sbjct: 554 VNKAIDLLNKMKIDGV 569


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 127/268 (47%), Gaps = 20/268 (7%)

Query: 141 VFARGNNVKGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196
           +  RG   +G W+     + DM  RG    V T SV  LI  +  +G V E +     MK
Sbjct: 271 ILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSV--LISSVCRDGKVEEGVGLLKDMK 328

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
           +   +PD Y Y+ +I ALC+ G  + A  +L+ M   G  C PD+  Y  +++  CK   
Sbjct: 329 KKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDG--CVPDIVNYNTILACLCK--- 383

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                   ++R  EA  +F  +   G  P+  +YN +      T    RAL +  +M  K
Sbjct: 384 --------QKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDK 435

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ-NLNHGVPTSSSYTPIIHALCEAGRVL 375
           G  P+ +TYNS I        +D+AIE++  M+   +   P+  SY  ++  LC+  RV 
Sbjct: 436 GVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVS 495

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           +A + LA +VD G  P E TY  + + +
Sbjct: 496 DAIEVLAAMVDKGCRPNETTYTFLIEGI 523



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 27/253 (10%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LI+    +G ++EA+     M +   +PD++ YN +I  +CR G  ++A  ++
Sbjct: 195 TVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQII 254

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAI----------- 264
             +   G+   PDV TY IL+      G            +  GC   +           
Sbjct: 255 SSISSKGY--APDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVC 312

Query: 265 -RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              ++ E   L + M  KG  PD   Y+ LI   CK  R++ A+E+ D M   GC+P+ V
Sbjct: 313 RDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIV 372

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
            YN+ +         D+A+ +  K+  +    P +SSY  +  AL   G  + A   + E
Sbjct: 373 NYNTILACLCKQKRADEALSIFEKLGEVGCS-PNASSYNSMFSALWSTGHKVRALGMILE 431

Query: 384 LVDGGSVPREYTY 396
           ++D G  P   TY
Sbjct: 432 MLDKGVDPDGITY 444



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 133/304 (43%), Gaps = 33/304 (10%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           GN  + L+ FL+ +  +G+   V     T LI  L     +++A+   + ++     PD+
Sbjct: 71  GNFNESLY-FLRHLVNKGHKPDVVL--CTKLIHGLFTSKTIDKAIQVMHILENHG-HPDL 126

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM-------- 256
            AYN +I   CR    + A  +L++M+  GF   PD+ TY ILI S C  GM        
Sbjct: 127 IAYNAIITGFCRANRIDSAYQVLDRMKNKGFS--PDIVTYNILIGSLCSRGMLDSALEFK 184

Query: 257 ----QTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
               +  C+  +            +  I EA  L   ML     PD+  YN +I G C+ 
Sbjct: 185 NQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCRE 244

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-S 359
             ++RA ++   ++ KG  P+ +TYN  +R      + +   E+M  M  +  G   +  
Sbjct: 245 GYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDM--VARGCEANVV 302

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
           +Y+ +I ++C  G+V E    L ++   G  P  Y Y  +  AL       L  + L   
Sbjct: 303 TYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVM 362

Query: 420 IRDG 423
           I DG
Sbjct: 363 ISDG 366


>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 484

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKEGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G            +  A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNXIFMRLISSHCKSG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGVLIENFCKXGQYDKAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L   G
Sbjct: 362 QSTL-HLEP--SAYNPMIEYLCNNGQAXKAETLVRQLXKLG 399



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 76/200 (38%), Gaps = 19/200 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G ++ A      M +     +   Y V+I   C+ G ++KA  LL+++    
Sbjct: 297 LISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKD 356

Query: 235 FRCPP------DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
               P      +   Y  +I   C  G        +R+            L K  V D  
Sbjct: 357 IILRPQSTLHLEPSAYNPMIEYLCNNGQAXKAETLVRQ------------LXKLGVQDPT 404

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           A N LI G  +    + A EL   M ++     +  YNS ++ Y   NE   A   +  M
Sbjct: 405 ALNTLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSM 464

Query: 349 QNLNHGVPTSSSYTPIIHAL 368
              +H +P S+ +  ++ +L
Sbjct: 465 IENDH-LPDSALFRSVMESL 483


>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 484

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKEGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G            +  A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLISSHCKSG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGXLIENFCKVGQYDKAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L   G
Sbjct: 362 QSTL-HLEP--SAYNPMIEYLCNNGQAXKAETLVRQLXKLG 399


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 128/272 (47%), Gaps = 24/272 (8%)

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           E TCK  G         K     L +M  +G    + T +V  ++  + +EG V++A+  
Sbjct: 195 EATCKRSGY--------KQAVKLLDEMRDKGCAPDIVTYNV--VVNGICQEGRVDDAMEF 244

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
              +  + C P+  +YN+V+  LC    +  A  L+ +M   G   PP+V T+ +LIS  
Sbjct: 245 LKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGR--PPNVVTFNMLISFL 302

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           C+ G+           +  A  +   +   G  P+ ++YN ++   CK  +++RA+   +
Sbjct: 303 CRRGL-----------VEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVE 351

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
            M   GC P+ V+YN+ +       E+D A+E++ ++++     P   SY  +I  L +A
Sbjct: 352 LMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKD-KGCTPVLISYNTVIDGLTKA 410

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           G+  EA + L E+V  G  P   TY  +   L
Sbjct: 411 GKTEEALELLNEMVTKGLQPDIITYSTISSGL 442



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+ L   G  + ALA    M +  C PDV  Y +++ A C+   + +A  LL++M   G
Sbjct: 158 LIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKG 217

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD+ TY ++++  C+ G           R+ +A    + +   G  P+ V+YN ++
Sbjct: 218 --CAPDIVTYNVVVNGICQEG-----------RVDDAMEFLKSLPSYGCEPNTVSYNIVL 264

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   R E A +L  +M++KG  PN VT+N  I +      ++ A+E++ ++      
Sbjct: 265 KGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGC- 323

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            P S SY PI+HA C+  ++  A  F+  +V  G  P   +Y  +  AL
Sbjct: 324 TPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTAL 372



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 18/251 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            + +MSR+G    V T ++  LI  L   GLV  A+    ++ ++ C P+  +YN +++A
Sbjct: 279 LMAEMSRKGRPPNVVTFNM--LISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHA 336

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+    ++A   +E M   G  C PD+ +Y  L+++ C+ G            +  A  
Sbjct: 337 FCKQKKMDRAMAFVELMVSSG--CYPDIVSYNTLLTALCRGG-----------EVDAAVE 383

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L   +  KG  P +++YN +IDG  K  + E ALEL ++M  KG  P+ +TY++      
Sbjct: 384 LLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLC 443

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               I++AI+   K+Q++  G+ P +  Y  I+  LC+      A D    +V  G +P 
Sbjct: 444 REGRIEEAIKAFCKVQDM--GIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPN 501

Query: 393 EYTYKLVCDAL 403
           E TY ++ + L
Sbjct: 502 ESTYTILIEGL 512



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 105/226 (46%), Gaps = 24/226 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK L   G   EA     R     C PDV +YN ++   C  G  + AR L+  M +  
Sbjct: 96  LIKKLCASGRTAEA-----RRVLASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPME- 149

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD YTY  LI   C  G           R   A  +   ML +G VPDVV Y  L+
Sbjct: 150 ----PDTYTYNTLIRGLCGRG-----------RTDNALAVLDDMLRRGCVPDVVTYTILL 194

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +  CK    ++A++L D+M  KGC P+ VTYN  +        +D A+E ++ +   ++G
Sbjct: 195 EATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLP--SYG 252

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             P + SY  ++  LC A R  +A   +AE+   G  P   T+ ++
Sbjct: 253 CEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNML 298



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 13/178 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L+  L   G V+ A+   +++K   C P + +YN VI+ L + G   +A  LL +M
Sbjct: 364 SYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEM 423

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +  PD+ TY+ + S  C+ G           RI EA   F  +   G  P+ V Y
Sbjct: 424 VTKGLQ--PDIITYSTISSGLCREG-----------RIEEAIKAFCKVQDMGIRPNTVLY 470

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           N ++ G CK      A++LF  M   GC+PN  TY   I   +    + +A EMM ++
Sbjct: 471 NAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAEL 528


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 12/206 (5%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           RM +  C PD ++Y +V+  LC      +A  LL  M      C PDV TY  +I  + K
Sbjct: 69  RMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFK 128

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           +I +A +L+  M+ +GFVPDVV +N +I+  CK   ++ A  L   M
Sbjct: 129 EG-----------KIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQM 177

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
              G  PN+VTY S I  YS +   ++A +M R+M      +P   S+   + +LC+ GR
Sbjct: 178 VDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGL-IPDIVSWNSFMDSLCKHGR 236

Query: 374 VLEARDFLAELVDGGSVPREYTYKLV 399
             EA +    +   G  P   TY ++
Sbjct: 237 SKEAAEIFYSMAAKGHRPNIVTYGIL 262



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 122/273 (44%), Gaps = 34/273 (12%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           + +G+G +      T LI    + G+++EA+     M+     PDV+ Y+ +I+ALCR+G
Sbjct: 281 TMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMG 340

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTG------- 259
               A     QM   G +  P+   Y  LI  +C +G            M  G       
Sbjct: 341 RLADAVDKFNQMIGTGVQ--PNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIA 398

Query: 260 ---------CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
                    C++    R+ +A+H+F L+   G   D++ +N LIDG C    + +A  + 
Sbjct: 399 FFNSIVHSICKEG---RVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVL 455

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
           D M   G  P+  TYN+ +  Y     ID  + + R+M +     PT+ +Y  I+  L  
Sbjct: 456 DAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSD-KKIKPTTVTYNIILDGLFR 514

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           AGR + A+  L E++  G+     TY ++   L
Sbjct: 515 AGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGL 547



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 104/223 (46%), Gaps = 14/223 (6%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG + +A   ++ M Q    PDV  +N +INALC+    + A  LL QM   G   PP+
Sbjct: 128 KEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGV--PPN 185

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
             TYT +I  Y   G           R  EA  +FR M  +G +PD+V++N  +D  CK 
Sbjct: 186 KVTYTSMIHGYSTLG-----------RWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKH 234

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R + A E+F  M  KG  PN VTY   +  Y+        +     M+  +  V     
Sbjct: 235 GRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKG-DGIVANCLV 293

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +T +I A  + G + EA   L+E+   G  P  +TY  +  AL
Sbjct: 294 FTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISAL 336



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 107/247 (43%), Gaps = 15/247 (6%)

Query: 144 RGNNVKGLWDFLKDMSRR--GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
            G +  G W+    M R   G G +    S    +  L + G   EA   FY M     R
Sbjct: 194 HGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHR 253

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++  Y ++++     G F         M+  G     +   +TILI +Y K GM     
Sbjct: 254 PNIVTYGILLHGYATEGCFADMMSFFNTMKGDGI--VANCLVFTILIDAYAKRGMMD--- 308

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                   EA  +   M  +G  PDV  Y+ LI   C+  R+  A++ F+ M   G  PN
Sbjct: 309 --------EAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPN 360

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            V Y+S I+ +    ++ KA E++ +M N     P  + +  I+H++C+ GRV++A    
Sbjct: 361 TVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIF 420

Query: 382 AELVDGG 388
             + D G
Sbjct: 421 DLVKDIG 427



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 14/225 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++  + +EG V +A   F  +K    R D+  +N +I+  C VG   KA  +L+ M   G
Sbjct: 403 IVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAG 462

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD +TY  L++ Y K G           RI +  +LFR M  K   P  V YN ++
Sbjct: 463 I--GPDTFTYNTLVNGYFKSG-----------RIDDGLNLFREMSDKKIKPTTVTYNIIL 509

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  +  R   A ++  +M   G   +  TYN  ++     N  D+AI M +K+  +N  
Sbjct: 510 DGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVK 569

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
              ++  T +I+++    R  EA+D  + + D G VP   TY ++
Sbjct: 570 FNITTLNT-MINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIM 613



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 15/190 (7%)

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
           PP ++TY ++++         GC +A R  +  A   F  +L  G   D  A N ++   
Sbjct: 5   PPTIFTYGVVMN---------GCCRARRPELGLA--FFGRLLRTGLKADKTAANTVLKCL 53

Query: 298 CKTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV- 355
           C T R + A++ L   M + GC+P+  +Y   ++     N   +A++++R M     GV 
Sbjct: 54  CCTKRTDDAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAK-EEGVC 112

Query: 356 -PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
            P   +Y  +IH   + G++ +A +   E++  G VP   T+  + +AL  A      + 
Sbjct: 113 SPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAEL 172

Query: 415 GLRKRIRDGI 424
            LR+ + +G+
Sbjct: 173 LLRQMVDNGV 182



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 74/193 (38%), Gaps = 26/193 (13%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           + G +++ L  F  M   + +P    YN++++ L R G    A+ +L +M   G      
Sbjct: 479 KSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEM--IGCGTTVS 536

Query: 241 VYTYTILISSYCKYG--------MQTGCRKAIR----------------RRIWEANHLFR 276
           + TY I++   C+           Q  C   ++                +R  EA  LF 
Sbjct: 537 LPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFS 596

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            +   G VP+   Y  +I    K   +E A  +F  M K GC P     N  IR      
Sbjct: 597 AISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTLLEKG 656

Query: 337 EIDKAIEMMRKMQ 349
           EI KA   M K+ 
Sbjct: 657 EIVKAGNYMSKVD 669


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 17/260 (6%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +LVT   V   +  L + G  + A     +M+Q +  P V  YN +I+ LC+  + + A 
Sbjct: 220 DLVTYGVV---VNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 276

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            L ++ME  G R  P+V TY+ LIS  C YG           R  +A+ L   M+ +   
Sbjct: 277 NLFKEMETKGIR--PNVVTYSSLISCLCNYG-----------RWSDASRLLSDMIERKIN 323

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           PDV  ++ LID   K  ++  A +L+D+M K+   P+ VTY+S I  + + + +D+A +M
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
              M +  H  P   +Y  +I   C+  RV E  +   E+   G V    TY ++   L 
Sbjct: 384 FEFMVS-KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLF 442

Query: 405 AAEEPSLLDDGLRKRIRDGI 424
            A +  +  +  ++ + DG+
Sbjct: 443 QAGDCDMAQEIFKEMVSDGV 462



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 29/247 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL  F  M+    RP+V  Y+ +I+ LC  G ++ A  LL  M     +  PDV+T+
Sbjct: 272 MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM--IERKINPDVFTF 329

Query: 245 TILISSYCKYGMQTGCRK------------------------AIRRRIWEANHLFRLMLF 280
           + LI ++ K G      K                         +  R+ EA  +F  M+ 
Sbjct: 330 SALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 389

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           K   PDVV YN LI G CK  R+E  +E+F +M+++G + N VTYN  I+      + D 
Sbjct: 390 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 449

Query: 341 AIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A E+ ++M  ++ GVP +  +Y  ++  LC+ G++ +A      L      P  YTY ++
Sbjct: 450 AQEIFKEM--VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 507

Query: 400 CDALNAA 406
            + +  A
Sbjct: 508 IEGMCKA 514



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 132/298 (44%), Gaps = 41/298 (13%)

Query: 150 GLWD----FLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G W      L DM  R+ N ++ T S+   LI    +EG + EA   +  M +    P +
Sbjct: 305 GRWSDASRLLSDMIERKINPDVFTFSA---LIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             Y+ +IN  C     ++A+ + E M      C PDV TY  LI  +CKY          
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFM--VSKHCFPDVVTYNTLIKGFCKY---------- 409

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
            +R+ E   +FR M  +G V + V YN LI G  +    + A E+F +M   G  PN +T
Sbjct: 410 -KRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 468

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YN+ +       +++KA+ +   +Q  +   PT  +Y  +I  +C+AG+V +  D    L
Sbjct: 469 YNTLLDGLCKNGKLEKAMVVFEYLQR-SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 527

Query: 385 VDGGSVPREYTYKLV------------CDAL--NAAEEPSLLDDG-----LRKRIRDG 423
              G  P    Y  +             DAL     E+ +L + G     +R R+RDG
Sbjct: 528 SLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDG 585



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 19/234 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F +   V+   +  ++MS+RG   LV  T +   LI+ L + G  + A   F  M     
Sbjct: 406 FCKYKRVEEGMEVFREMSQRG---LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P++  YN +++ LC+ G   KA  + E ++    +  P +YTY I+I   CK G     
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS--KMEPTIYTYNIMIEGMCKAG----- 515

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ +   LF  +  KG  PDVVAYN +I G C+    E A  LF +M + G +P
Sbjct: 516 ------KVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 569

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           N   YN+ IR      + + + E++++M++   G    +S   ++  +   GR+
Sbjct: 570 NSGCYNTLIRARLRDGDREASAELIKEMRSC--GFAGDASTIGLVTNMLHDGRL 621



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 124/261 (47%), Gaps = 33/261 (12%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R  + K  +D+ + +SR G  EL                  +++A+A F  M + R  P 
Sbjct: 38  RAFSGKTSYDYREKLSRNGLSELK-----------------LDDAVALFGEMVKSRPFPS 80

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +  ++ +++A+ ++  F+    L EQM+  G   P + YTY+ILI+ +C+          
Sbjct: 81  IIEFSKLLSAIAKMNKFDVVISLGEQMQNLGI--PHNHYTYSILINCFCR---------- 128

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
            R ++  A  +   M+  G+ P++V  + L++G C + RI  A+ L D M   G  PN V
Sbjct: 129 -RSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTV 187

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           T+N+ I    + N+  +A+ ++ +M  +  G  P   +Y  +++ LC+ G    A + L 
Sbjct: 188 TFNTLIHGLFLHNKASEAMALIDRM--VAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLN 245

Query: 383 ELVDGGSVPREYTYKLVCDAL 403
           ++  G   P    Y  + D L
Sbjct: 246 KMEQGKLEPGVLIYNTIIDGL 266



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 18/214 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA+A   +M     +P+   +N +I+ L      ++A  L+++M   G  C PD+ TY
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG--CQPDLVTY 224

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ++++  CK G               A +L   M      P V+ YN +IDG CK   ++
Sbjct: 225 GVVVNGLCKRGDTD-----------LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMD 273

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYT 362
            AL LF +M  KG  PN VTY+S I           A  ++  M  + +N   P   +++
Sbjct: 274 DALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN---PDVFTFS 330

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +I A  + G+++EA     E+V     P   TY
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 364


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 124/255 (48%), Gaps = 29/255 (11%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   +IK +   G   +AL    RM +F C PD   +N++++ LCR    NK   +L ++
Sbjct: 217 SFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRL 276

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG------------MQTGCR--------------KAI 264
           +  G  C P+  TYT +IS YCK G            +++G R              KA+
Sbjct: 277 QRDGV-CMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKAL 335

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              +  A  ++R ++ +   PDVV ++ LIDG C+  +++ A  ++ +M      PN  T
Sbjct: 336 D--MESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYT 393

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           ++  I      N   +A++++R++       P +  Y P+I  LC+ G+V EA   + ++
Sbjct: 394 FSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDM 453

Query: 385 VDGGSVPREYTYKLV 399
            + G  P +YTY ++
Sbjct: 454 KEKGCHPDKYTYTIL 468



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 15/234 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           +I  L   G   +AL  F +M  Q    P+   ++ V  +    G  + A  LL +    
Sbjct: 114 VIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAASTLLTKGSRL 173

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAYNC 292
           G  C  + Y Y  L++S   +G           R  +A  LF   +  G + PDV ++N 
Sbjct: 174 G--CCIEPYAYNYLLNSLIAHG-----------RAQDAVALFESWIQDGLYSPDVWSFNV 220

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +I G C+    ++ALEL + M + GC P+ +T+N  +       +++K  E++R++Q   
Sbjct: 221 VIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDG 280

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
             +P + +YT +I   C+AG++ +A     ++++ G+ P   TY ++ +    A
Sbjct: 281 VCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKA 334



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 115/261 (44%), Gaps = 23/261 (8%)

Query: 89  NIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNV 148
            I +N+LV G    +        +NK  E    ++R      N +T   +   + +   +
Sbjct: 250 TITHNILVDGLCRAKQ-------VNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKM 302

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           +       DM   G      T +V  LI   G+   +  A+  + ++    C PDV  ++
Sbjct: 303 EDAMSVYNDMLESGTRPNTVTYNV--LINGYGKALDMESAVRMYRQLILRHCPPDVVTFS 360

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
            +I+  CR G  + A+ + ++M L   +  P+VYT++I+I S CK           + R 
Sbjct: 361 SLIDGYCRCGQLDDAKRIWKEMGLHHIQ--PNVYTFSIIIHSLCK-----------QNRS 407

Query: 269 WEANHLFR-LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
            EA  + R L +     P    YN +ID  CK  +++ A  +  DM +KGC P++ TY  
Sbjct: 408 AEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTI 467

Query: 328 FIRYYSVVNEIDKAIEMMRKM 348
            I  + +   I +AI +  KM
Sbjct: 468 LIIGHCMKGRIPEAITLFHKM 488



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 79/200 (39%), Gaps = 12/200 (6%)

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFV 284
           +   +  P    PP   +Y  +I+  C+ G         R R  +A  LF  M+ + G++
Sbjct: 93  IFSALHSPPLSVPPSEQSYIHVIAFLCRSG---------RHR--DALKLFDQMMDQSGYL 141

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+   ++ +   C     ++ A  L    ++ GC      YN  +           A+ +
Sbjct: 142 PEAGFFSFVAGSCTNAGLLDAASTLLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVAL 201

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
                      P   S+  +I  +C  G   +A + +  + + G  P   T+ ++ D L 
Sbjct: 202 FESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLC 261

Query: 405 AAEEPSLLDDGLRKRIRDGI 424
            A++ +   + LR+  RDG+
Sbjct: 262 RAKQVNKGHEVLRRLQRDGV 281


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 105/199 (52%), Gaps = 14/199 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--VPNGVTFTTLIDGHCKNG----- 261

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +   PD++ YN LI G CK   +++A  L D+M+ KG  P
Sbjct: 262 ------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKP 315

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +++TY + I       ++D A E  ++M   N  +    +YT +I  LC+ GR ++A   
Sbjct: 316 DKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD-EVAYTALISGLCQEGRSVDAEKM 374

Query: 381 LAELVDGGSVPREYTYKLV 399
           L E++  G  P   TY ++
Sbjct: 375 LREMLSVGLKPDARTYTMI 393



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 105/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 142 LYFFNILMHRFCKDGDIRJAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 191

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 192 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP 245

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A 
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAH 302

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
             + E+   G  P + TY  + D 
Sbjct: 303 HLIDEMSVKGLKPDKITYTTLIDG 326



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 14/197 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 308

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G +  PD  TYT LI   CK G      +  +R I E   L           D VAY
Sbjct: 309 SVKGLK--PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL-----------DEVAY 355

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ 
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQR 415

Query: 351 LNHGVPTSSSYTPIIHA 367
             H VP+  +Y  +++ 
Sbjct: 416 DGH-VPSVVTYNVLMNG 431



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 27/189 (14%)

Query: 239 PDVYTYTILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GF 283
            D+Y ++ LI++Y + G       C +  R  + W           HL +L  FK   GF
Sbjct: 70  SDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 129

Query: 284 VPDVVA---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
             +++          +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 335 VNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           + ++D+   +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G VP  
Sbjct: 190 LGDLDEGFRLKSAM--LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNG 247

Query: 394 YTYKLVCDA 402
            T+  + D 
Sbjct: 248 VTFTTLIDG 256


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/210 (34%), Positives = 111/210 (52%), Gaps = 18/210 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG---LVNEALATFYRMKQF 198
           F     +K  +  L +M  +     V T SV  LI  LG+EG   +V+EA++ F  MK  
Sbjct: 243 FCIMGKMKEAFSLLNEMKLKNINPDVYTFSV--LIDALGKEGKKKMVDEAMSLFEEMKHK 300

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
              PD+  YN +I+ LC+  +  +A  LL++M+  G +  PDVY+YTIL+   CK G   
Sbjct: 301 NMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQ--PDVYSYTILLDGLCKGG--- 355

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                   R+  A   F+ +L KG   +V  YN +I+G CK      A++L   M  KGC
Sbjct: 356 --------RLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGC 407

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           +PN +T+ + I   S  +E DKA +++R+M
Sbjct: 408 MPNAITFRTIICALSEKDENDKAEKILREM 437



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 122/251 (48%), Gaps = 13/251 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L +  L+ +A   +  M      PDV  Y  +I+  C +G   +A  LL +M+L  
Sbjct: 204 IINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKN 263

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDVYT+++LI +  K G         ++ + EA  LF  M  K  +PD+V YN LI
Sbjct: 264 IN--PDVYTFSVLIDALGKEGK--------KKMVDEAMSLFEEMKHKNMIPDIVTYNSLI 313

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK + +ERA+ L  +M + G  P+  +Y   +        ++ A E  + +  L  G
Sbjct: 314 DGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHL--LVKG 371

Query: 355 VPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
              +   Y  +I+ LC+AG   EA D  +++   G +P   T++ +  AL+  +E    +
Sbjct: 372 CHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDENDKAE 431

Query: 414 DGLRKRIRDGI 424
             LR+ I  G+
Sbjct: 432 KILREMIARGL 442



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 111/246 (45%), Gaps = 21/246 (8%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG      +++ LI     +  +  A + F  + +    PD    N +I  LC  G   K
Sbjct: 87  NGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKK 146

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
             +  +Q+   GF+   D  +Y  LI+  CK     G  KA+ R       L R +    
Sbjct: 147 TLYFHDQVVAQGFQL--DQVSYGTLINGLCK----AGETKAVAR-------LLRKLEGHS 193

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PDVV YN +I+  CK   +  A +++ +M  KG  P+ VTY + I  + ++ ++ +A 
Sbjct: 194 VKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAF 253

Query: 343 EMMR--KMQNLNHGVPTSSSYTPIIHALCEAGR---VLEARDFLAELVDGGSVPREYTYK 397
            ++   K++N+N   P   +++ +I AL + G+   V EA     E+     +P   TY 
Sbjct: 254 SLLNEMKLKNIN---PDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYN 310

Query: 398 LVCDAL 403
            + D L
Sbjct: 311 SLIDGL 316



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 16/170 (9%)

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           R PP  + +  ++SS  K            +R      LF+     G  PD+   + LI+
Sbjct: 53  RPPPPTFLFNNILSSLVK-----------NKRYPTVISLFKQFEPNGITPDLCTLSILIN 101

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
             C    I  A  +F ++ K+G  P+ +T N+ I+      EI K +      Q +  G 
Sbjct: 102 CFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHD--QVVAQGF 159

Query: 356 PTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSV-PREYTYKLVCDAL 403
                SY  +I+ LC+AG        L +L +G SV P    Y  + ++L
Sbjct: 160 QLDQVSYGTLINGLCKAGETKAVARLLRKL-EGHSVKPDVVMYNTIINSL 208


>gi|125559578|gb|EAZ05114.1| hypothetical protein OsI_27306 [Oryza sativa Indica Group]
          Length = 737

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 108/218 (49%), Gaps = 14/218 (6%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           +E L     M Q  C+PDV   N VI+  C+VG   +AR +++ M L G  C PDV T+T
Sbjct: 364 SEQLDVLVSMLQEGCKPDVITMNTVIHGFCKVGRAQEARRIVDDM-LNGKFCAPDVVTFT 422

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPDVVAYNCLIDGCCKTYRIE 304
            LIS Y   G              EA H+   ++ K   +P+VV YNC++ G      ++
Sbjct: 423 TLISGYLGVG-----------EFAEALHVLSTLMPKHQCLPNVVTYNCVLKGLLSLGLLD 471

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           RA+E  ++M     IP+ VT+   I+ +    E++KA      +     G+     Y+ I
Sbjct: 472 RAMEALEEMKSSNVIPDSVTHTVMIKGFCDAGELEKAKSFWDNVI-WPSGMHDDYVYSAI 530

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              LC+ G++ +A DFL ELVD G  P    Y ++ DA
Sbjct: 531 FRGLCKLGKLEQACDFLYELVDSGVAPGVLCYNILVDA 568



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 122/296 (41%), Gaps = 34/296 (11%)

Query: 142 FARGNNVKGLWDFLKDMSRRG--NGELVTTSSVTCLIK---VLGEEGLVNEAL-ATFYRM 195
           +AR  + + +   L +M RRG     L  T  V  L++   V G   LV+  L ++  R 
Sbjct: 133 YARIPDPRAVRKLLDEMPRRGVAPSSLARTYLVKALLRSRDVDGAMALVDNHLWSSMERS 192

Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP-PDVYTYTILISSYCKY 254
                     A+  ++  LC  G F+    + E+M  P  RC   DV+ Y+ +I S C+ 
Sbjct: 193 NGEDQELKNAAFANLVQCLCIEGFFHIVFRIAEEM--PQQRCGVADVFAYSQMIDSLCRS 250

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE---RALELFD 311
           G   G           A+ +  +M  +G  P  V+YNC++ G C + +     RA +L  
Sbjct: 251 GQHHG-----------ASRIVYIMGKRGMYPSTVSYNCIVHGLCTSQKPGGRLRAYQLVM 299

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
           +  +    P  VTY   +      NE+ KA ++M  M  +    P   + T I +    A
Sbjct: 300 EGVRFRYHPREVTYKVLVDELCRENELAKAKDVMELMLKV---TPDDDTRTRIYNMFLAA 356

Query: 372 GRVL----EARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKR 419
            RV+    E  D L  ++  G  P   T   V    C    A E   ++DD L  +
Sbjct: 357 LRVVDNPSEQLDVLVSMLQEGCKPDVITMNTVIHGFCKVGRAQEARRIVDDMLNGK 412



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 21/179 (11%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP-GFRCPPDVYTY 244
           + A+     MK     PD   + V+I   C  G   KA+   + +  P G     D Y Y
Sbjct: 471 DRAMEALEEMKSSNVIPDSVTHTVMIKGFCDAGELEKAKSFWDNVIWPSGMH---DDYVY 527

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           + +    CK G           ++ +A      ++  G  P V+ YN L+D  CK    +
Sbjct: 528 SAIFRGLCKLG-----------KLEQACDFLYELVDSGVAPGVLCYNILVDAACKQGLKK 576

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE-IDKAIEMMRKMQNLNHGVPTSSSYT 362
              +L  +M + G  P+ VT+    R +   +E  D  ++M     +   G P+S+  T
Sbjct: 577 LVYQLVKEMRRNGISPDAVTWRIIDRLHLYSDEKQDGELQM-----SATDGDPSSADDT 630



 Score = 41.6 bits (96), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 10/147 (6%)

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           V DV AY+ +ID  C++ +   A  +   M K+G  P+ V+YN  +          K   
Sbjct: 234 VADVFAYSQMIDSLCRSGQHHGASRIVYIMGKRGMYPSTVSYNCIVHGLCTSQ---KPGG 290

Query: 344 MMRKMQNLNHGV-----PTSSSYTPIIHALCEAGRVLEARDFLAEL--VDGGSVPREYTY 396
            +R  Q +  GV     P   +Y  ++  LC    + +A+D +  +  V      R   Y
Sbjct: 291 RLRAYQLVMEGVRFRYHPREVTYKVLVDELCRENELAKAKDVMELMLKVTPDDDTRTRIY 350

Query: 397 KLVCDALNAAEEPSLLDDGLRKRIRDG 423
            +   AL   + PS   D L   +++G
Sbjct: 351 NMFLAALRVVDNPSEQLDVLVSMLQEG 377


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 106/199 (53%), Gaps = 14/199 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 209 QPDVYTYSVLINGLCKESKMDGANELFDEMLVKGL--VPNGVTFTTLIDGHCKNG----- 261

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +  +PD++ YN LI G CK   +++A +L D+M+ KG  P
Sbjct: 262 ------RVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKP 315

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           ++ TY + I       ++D A E  ++M   N  +    +YT +I  LC+ GR ++A   
Sbjct: 316 DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD-DVAYTALISGLCQEGRSVDAEKM 374

Query: 381 LAELVDGGSVPREYTYKLV 399
           L E++  G  P   TY ++
Sbjct: 375 LREMLSVGLKPDTGTYTMI 393



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 107/204 (52%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 142 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 191

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 192 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVP 245

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A 
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL---LPDLITYNTLIYGLCKKGDLKQAH 302

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P ++TY  + D 
Sbjct: 303 DLIDEMSMKGLKPDKFTYTTLIDG 326



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 16/198 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 308

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
            + G +  PD +TYT LI   CK G + T      R+R+ + N   RL        D VA
Sbjct: 309 SMKGLK--PDKFTYTTLIDGCCKEGDLDTAFEH--RKRMIQEN--IRL--------DDVA 354

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++M 
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMH 414

Query: 350 NLNHGVPTSSSYTPIIHA 367
              H  P+  +Y  +++ 
Sbjct: 415 RDGHA-PSVVTYNVLMNG 431



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 15/153 (9%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  ++K   D + +MS +G        + T LI    +EG ++ A     RM Q   R D
Sbjct: 294 KKGDLKQAHDLIDEMSMKGLKP--DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 351

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
             AY  +I+ LC+ G    A  +L +M   G +  PD  TYT++I+ +CK G        
Sbjct: 352 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PDTGTYTMIINEFCKKG-------- 401

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
               +W+ + L + M   G  P VV YN L++G
Sbjct: 402 ---DVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 45/244 (18%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQ-----------------MELPGFRCPPDVYT 243
           R  +++Y  +I+ LC     ++A+ L+E                  +E  G +   D+Y 
Sbjct: 16  RHTLHSYCTMIHFLCTHQMLSEAKSLIEVVVSRKGKGSASAVFAAVLETKGNQ-RSDIYV 74

Query: 244 YTILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GFVPDVV 288
           ++ LI++Y + G       C +  R  ++W           HL +L  FK   GF  +++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 289 A---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
                     +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  + ++D
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 340 KAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           +   +   M  L  GV P   +Y+ +I+ LC+  ++  A +   E++  G VP   T+  
Sbjct: 195 EGFRLKSAM--LASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTT 252

Query: 399 VCDA 402
           + D 
Sbjct: 253 LIDG 256


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 110/217 (50%), Gaps = 14/217 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+     PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGL--VPNXV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  ++R ML +  +PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A E  ++M   N       +YT
Sbjct: 292 LKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +I  LC+ GR ++A   L E++  G  P   TY ++
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 102/201 (50%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHXFCKEGEIRLAQSVFDSITKWGLR--PSVVSFNTLMNGYIKIG-------- 185

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L  +M   G  PDV  Y+ LI+G CK  +++ A ELFD+M   G +PN V
Sbjct: 186 ---DLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXV 242

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ R+M  Q+L   +P   +Y  +I+ LC+ G + +A D +
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYRQMLSQSL---LPDLITYNTLIYGLCKKGDLKQAHDLI 299

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+   G  P + TY  + D 
Sbjct: 300 DEMSMKGLKPDKITYTTLIDG 320



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 26/223 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + B     NG +    + T LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANELFDEMLB-----NGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A  L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK--PDKITYTTLIDGXCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N             D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN----------IRXDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
              G  P   TY   I       ++    +++++MQ   + VP
Sbjct: 373 LSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGY-VP 414



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 40/215 (18%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           R D Y ++ +I A    G    A       +   FR P D                   C
Sbjct: 63  RSDXYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDT------------------C 104

Query: 261 RKAIRRRIWEANHLFRLMLFK------------GFVPDVVAYNCLIDGCCKTYRIERALE 308
           RK I        HL +L  FK            G+   +  +N L+   CK   I  A  
Sbjct: 105 RKVIE-------HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHXFCKEGEIRLAQS 157

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
           +FD + K G  P+ V++N+ +  Y  + ++D+   +   MQ    GV P   +Y+ +I+ 
Sbjct: 158 VFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ--ASGVHPDVYTYSVLING 215

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           LC+  ++ +A +   E++B G VP   T+  + D 
Sbjct: 216 LCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDG 250


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G+++E       M     +PDVY Y+V+IN LC+    ++A  L ++M   G    P+  
Sbjct: 185 GILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           ++  A  +++ +L +G  PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------KLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++  +L D+M+ KG  P+++TY + I       +++ A E  +KM   N  +     YT
Sbjct: 292 LKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLD-DVVYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY +V +      + +     L++  RD
Sbjct: 351 ALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 103/200 (51%), Gaps = 16/200 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G    A+ + + +   G +  P V ++  L++ Y K G+       
Sbjct: 136 LYFFNILMHRFCKEGEIRLAQLVFDAITKWGLK--PSVVSFNTLMNGYIKMGI------- 186

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M +KG +PN V
Sbjct: 187 ----LDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGV 242

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           T+ + I  +    ++D A+E+ +  Q L+ G+ P   +Y  +I+  C+ G + + RD + 
Sbjct: 243 TFTTLIDGHCKNGKLDLAMEIYK--QILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLID 300

Query: 383 ELVDGGSVPREYTYKLVCDA 402
           E+   G  P + TY  + D 
Sbjct: 301 EMSMKGLKPDKITYTTLIDG 320



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 16/188 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G ++ A+  + ++      PD+  YN +I   C+ G+  + R L+++M
Sbjct: 243 TFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEM 302

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
            + G +  PD  TYT LI   CK G ++T      R+++ E N   RL        D V 
Sbjct: 303 SMKGLK--PDKITYTTLIDGSCKEGDLETAFE--YRKKMIEEN--IRL--------DDVV 348

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  LI G CK  R   A ++  +M   G  P+  TY   +  +    +++   +++++MQ
Sbjct: 349 YTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQ 408

Query: 350 NLNHGVPT 357
              H VP+
Sbjct: 409 RDGH-VPS 415



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 28/242 (11%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   +   A +++   + R G  + +      +E  G +   D+Y +
Sbjct: 11  HTLHSYCTMIHFLCTHQMLPEAKSLIQVIVSRKGKDSASAVFAAILETKGTQ-RSDIYVF 69

Query: 245 TILISSYCKYGMQTGCRKAIR----RRIWEA--------NHLFRLMLFK---GFVPDVVA 289
           + LI++Y + G      +  R     + W          +HL +L  FK   GF  +++ 
Sbjct: 70  SGLITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWGFYKEILE 129

Query: 290 ---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
                    +N L+   CK   I  A  +FD + K G  P+ V++N+ +  Y  +  +D+
Sbjct: 130 CGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDE 189

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
              +   M   +   P   +Y+ +I+ LC+  ++ EA +   E+++ G VP   T+  + 
Sbjct: 190 GFRLKNAMHA-SGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLI 248

Query: 401 DA 402
           D 
Sbjct: 249 DG 250


>gi|115474031|ref|NP_001060614.1| Os07g0674300 [Oryza sativa Japonica Group]
 gi|34393854|dbj|BAC83534.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|34395085|dbj|BAC84771.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113612150|dbj|BAF22528.1| Os07g0674300 [Oryza sativa Japonica Group]
 gi|125601488|gb|EAZ41064.1| hypothetical protein OsJ_25552 [Oryza sativa Japonica Group]
          Length = 737

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 108/218 (49%), Gaps = 14/218 (6%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           +E L     M Q  C+PDV   N VI+  C+VG   +AR +++ M L G  C PDV T+T
Sbjct: 364 SEQLDVLVSMLQEGCKPDVITMNTVIHGFCKVGRAQEARRIVDDM-LNGKFCAPDVVTFT 422

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPDVVAYNCLIDGCCKTYRIE 304
            LIS Y   G              EA H+   ++ K   +P+VV YNC++ G      ++
Sbjct: 423 TLISGYLGVG-----------EFAEALHVLSTLMPKHQCLPNVVTYNCVLKGLLSLGLLD 471

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           RA+E  ++M     IP+ VT+   I+ +    E++KA      +     G+     Y+ I
Sbjct: 472 RAMEALEEMKSSNVIPDSVTHTVMIKGFCDAGELEKAKSFWDNVI-WPSGMHDDYVYSAI 530

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              LC+ G++ +A DFL ELVD G  P    Y ++ DA
Sbjct: 531 FRGLCKLGKLEQACDFLYELVDSGVAPGVLCYNILVDA 568



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 123/296 (41%), Gaps = 34/296 (11%)

Query: 142 FARGNNVKGLWDFLKDMSRRG--NGELVTTSSVTCLIK---VLGEEGLVNEAL-ATFYRM 195
           +AR  + + +   L +M RRG     L  +  V  L++   V G   LV+  L ++  R 
Sbjct: 133 YARIPDPRAVRKLLDEMPRRGVAPSSLARSYLVKALLRSRDVDGAMALVDNHLWSSMERS 192

Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP-PDVYTYTILISSYCKY 254
                     A+  ++  LC  G F+    + E+M  P  RC   DV+ Y+ +I S C+ 
Sbjct: 193 NGEDQELKNAAFANLVQCLCIEGFFHIVFRIAEEM--PQQRCGVADVFAYSQMIDSLCRS 250

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE---RALELFD 311
           G   G           A+ +  +M  +G  P  V+YNC++ G C + +     RA +L  
Sbjct: 251 GQHHG-----------ASRIVYIMGKRGMYPSTVSYNCIVHGLCTSQKPGGRLRAYQLVM 299

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
           +  +    P  VTY   +    + NE+ KA ++M  M  +    P   + T I +    A
Sbjct: 300 EGVRFRYHPREVTYKVLVDELCLENELAKAKDVMELMLKV---TPDDDTRTRIYNMFLAA 356

Query: 372 GRVL----EARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKR 419
            RV+    E  D L  ++  G  P   T   V    C    A E   ++DD L  +
Sbjct: 357 LRVVDNPSEQLDVLVSMLQEGCKPDVITMNTVIHGFCKVGRAQEARRIVDDMLNGK 412



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 21/179 (11%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP-GFRCPPDVYTY 244
           + A+     MK     PD   + V+I   C  G   KA+   + +  P G     D Y Y
Sbjct: 471 DRAMEALEEMKSSNVIPDSVTHTVMIKGFCDAGELEKAKSFWDNVIWPSGMH---DDYVY 527

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           + +    CK G           ++ +A      ++  G  P V+ YN L+D  CK    +
Sbjct: 528 SAIFRGLCKLG-----------KLEQACDFLYELVDSGVAPGVLCYNILVDAACKQGLKK 576

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE-IDKAIEMMRKMQNLNHGVPTSSSYT 362
              +L  +M + G  P+ VT+    R +   +E  D  ++M     +   G P+S+  T
Sbjct: 577 LVYQLVKEMRRNGISPDAVTWRIIDRLHLYSDEKQDGELQM-----SATDGDPSSADDT 630



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 10/147 (6%)

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           V DV AY+ +ID  C++ +   A  +   M K+G  P+ V+YN  +          K   
Sbjct: 234 VADVFAYSQMIDSLCRSGQHHGASRIVYIMGKRGMYPSTVSYNCIVHGLCTSQ---KPGG 290

Query: 344 MMRKMQNLNHGV-----PTSSSYTPIIHALCEAGRVLEARDFLAEL--VDGGSVPREYTY 396
            +R  Q +  GV     P   +Y  ++  LC    + +A+D +  +  V      R   Y
Sbjct: 291 RLRAYQLVMEGVRFRYHPREVTYKVLVDELCLENELAKAKDVMELMLKVTPDDDTRTRIY 350

Query: 397 KLVCDALNAAEEPSLLDDGLRKRIRDG 423
            +   AL   + PS   D L   +++G
Sbjct: 351 NMFLAALRVVDNPSEQLDVLVSMLQEG 377


>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 484

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMK--GS 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKEGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGSGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 26/215 (12%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK    +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGSGIKPNAITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G            +  A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLISSHCKSG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCI----------PNRVTYNSFIRYYSVVNE 337
             Y  LI+  CK  + ++A++L D + +K  I          PN   YN  I Y     +
Sbjct: 327 GHYGLLIEKFCKAGQYDKAVKLLDKLIEKDIILRPQSTLHLEPN--AYNPMIEYLCNNGQ 384

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
             KA  ++R++  L  GV   ++   +I    + G
Sbjct: 385 ASKAETLVRQLMKL--GVQDPTALNTLIRGHSQEG 417


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 138/281 (49%), Gaps = 21/281 (7%)

Query: 122 VERFFDFFHNEMTCKEMGIVF----ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
           V R  D + +++T ++  ++F    AR +  + L  F K M R+   +  T    T +I 
Sbjct: 33  VTRCMDLYRSKLTMQDFSLIFREFAARSDWHRALRLF-KYMQRQQWCK-PTEHIYTIMIG 90

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
           ++G EGL+ +    F  M +   + +VYA+  +INA  R G +  +  LL +M+    R 
Sbjct: 91  IMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKE--RV 148

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN-HLFRLMLFKGFVPDVVAYNCLIDG 296
            P++ TY  ++++  K G+            WE   +LF  M  +G  PD++ YN L+  
Sbjct: 149 EPNLITYNTVLNACSKGGLD-----------WEGLLNLFAQMRHEGIQPDLITYNTLLSA 197

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
           C     +E+A  +F  MN+ G + + VTY S +  ++  N++ +  E++R+M++  +  P
Sbjct: 198 CSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNS-P 256

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
             + Y  +I A  +AG V  A     ++  GG  P   TY 
Sbjct: 257 DIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYS 297



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 124/311 (39%), Gaps = 37/311 (11%)

Query: 119 YHWVERFFDFFHNEMTCKE-------MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           +H   R F +   +  CK        M  +  R   ++   +  +DM    N       +
Sbjct: 62  WHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPE--NDVKWNVYA 119

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQM 230
            T LI   G  G    +L    RMK+ R  P++  YN V+NA  + G ++     L  QM
Sbjct: 120 FTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQM 179

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM------------QTGCRK------------AIRR 266
              G +  PD+ TY  L+S+    G+            ++G               A   
Sbjct: 180 RHEGIQ--PDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSN 237

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++     L R M  +G  PD+  YN LI+       +  A  +F  M + GC P+  TY+
Sbjct: 238 QLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYS 297

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           + +R Y      ++   +   M+ L+   PT ++Y  +I    E G   E+ +   ++VD
Sbjct: 298 TLLRIYGNQGCFEQVRSLFSDMKELST-PPTVATYNSLIQVFGEGGYFQESINLFHDMVD 356

Query: 387 GGSVPREYTYK 397
            G  P + TY 
Sbjct: 357 SGVKPDDATYS 367



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 110/283 (38%), Gaps = 28/283 (9%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            +A   NV G     K M R G    V T S   L+++ G +G   +  + F  MK+   
Sbjct: 267 AYADAGNVHGAAGVFKQMQRGGCAPDVETYST--LLRIYGNQGCFEQVRSLFSDMKELST 324

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P V  YN +I      G F ++  L   M   G +  PD  TY+ L+S   + G+    
Sbjct: 325 PPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVK--PDDATYSALLSVCGRGGLTREA 382

Query: 261 RKAIRRRI-------WEANHLF-----RLMLFK------------GFVPDVVAYNCLIDG 296
            K  +  +        EA+        ++ ++K            G  P V AY+ LI G
Sbjct: 383 AKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQG 442

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
             K      A      MNK G      + NS +  YS V   D+A+E   ++Q       
Sbjct: 443 YAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEV 502

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
              ++  ++   C+ G + EA++    + +   VP    Y L+
Sbjct: 503 DERTHETLLGVYCDMGLLEEAKEEFVIIKETSKVPGARVYCLL 545



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 95/251 (37%), Gaps = 41/251 (16%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI   G+  +  +AL ++YR+++    P V AY+ +I    + G + +A   L  M   G
Sbjct: 404 LISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAG 463

Query: 235 FRCPPDVYTYTILISSYCKYG-----------MQTGCRKAIRRR--------------IW 269
           F+ P  V +   ++ +Y K G           +Q      +  R              + 
Sbjct: 464 FQAP--VSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCDMGLLE 521

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN------RV 323
           EA   F ++     VP    Y  L+  C +  + + A +L D+M   G +        R 
Sbjct: 522 EAKEEFVIIKETSKVPGARVYCLLLSLCVRRSKWDYATQLLDEMIAAGGLHQVVVGIVRG 581

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           TY++   +  V    D     +R M+       +   Y  ++  L    +   A   LA+
Sbjct: 582 TYDADFSWQVVEYAFDGL--KLRDMEE------SMDFYNALVELLVYCNQKARAARVLAD 633

Query: 384 LVDGGSVPREY 394
            +  G+ P  +
Sbjct: 634 AMQRGAFPEAF 644


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M     +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G C+   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A E  ++M   N  +     YT
Sbjct: 292 LKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLD-DVGYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR L+A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ +   +   G R  P V ++  L++ Y + G        
Sbjct: 136 LYFFNILMHKFCKDGDIRVAQSVFNAITKWGLR--PSVVSFNTLMNGYIRLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 186 ------DLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC  G + +AR
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCRKGDLKQAR 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDG 320



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 23/215 (10%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG   TT     LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANELFDEMLDKGLVPNGVTFTT-----LIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LCR G+  +AR L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLK--PDKITYTTLIDGXCKE 324

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G      +  +R I E   L           D V Y  LI G C+  R   A ++  +M 
Sbjct: 325 GDLETAFEHRKRMIQENIQL-----------DDVGYTALISGLCQEGRYLDAEKVLREML 373

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
             G  P+ +TY   I  +    ++    +++++MQ
Sbjct: 374 SVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
 gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
          Length = 381

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 141/276 (51%), Gaps = 21/276 (7%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEAL 189
           NE T   +    +R   ++ +  +L+ MS+ G    +VT ++V   I  + E+G V+ AL
Sbjct: 85  NEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAV---ISGMCEQGHVDSAL 141

Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
                M+ F C+PD+  YN ++  LC    +  A  L+  +++    C PD  T+  +IS
Sbjct: 142 ELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELM--IKMSQNDCLPDNVTFNTIIS 199

Query: 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
             C+ G+           I +A  +F+ M  KG  P+   Y+ +I G  K  ++E+ALEL
Sbjct: 200 FLCQKGL-----------ILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQALEL 248

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHAL 368
            ++M  KG   +++ Y       +  ++I++ ++++ K+Q+   G+ P +  +  ++  L
Sbjct: 249 LNEMASKGYNTDKM-YQLLTESLNKEDKIEEVVQVVHKLQD--SGISPQTVLFNTVLLVL 305

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           C  G+   A D LA++V  G +P E TY ++ + L+
Sbjct: 306 CRNGKTDYAIDVLADMVSYGCMPDELTYIILIEGLS 341



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 27/236 (11%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M+   C P+V  YNV+I+A+CR G+ ++AR LL    LP   C P+   Y  ++   C  
Sbjct: 7   MRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNS--LPSRGCKPNTVNYNTVLKGLCSI 64

Query: 255 GMQTGCRKAIRRRIWE------------ANHLFRLMLFK------------GFVPDVVAY 290
                  + +   + E             N L R  L +            G   +VV Y
Sbjct: 65  ERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTY 124

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N +I G C+   ++ ALEL  +M   GC P+ VTYN+ ++     ++ + A E+M KM  
Sbjct: 125 NAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQ 184

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            N  +P + ++  II  LC+ G +L+A +   ++ + G  P   TY  +   L  A
Sbjct: 185 -NDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKA 239



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 16/184 (8%)

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           L++ M   G  C P+V TY ++I + C+ G            + +A  L   +  +G  P
Sbjct: 3   LIDLMRAEG--CEPNVVTYNVIIDAMCREG-----------DVDQARELLNSLPSRGCKP 49

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           + V YN ++ G C   R   A EL D+M ++ C PN  T N  +   S    + K    +
Sbjct: 50  NTVNYNTVLKGLCSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYL 109

Query: 346 RKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
            KM    HG   +  +Y  +I  +CE G V  A + L+ +   G  P   TY  +   L 
Sbjct: 110 EKMSK--HGCTANVVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLC 167

Query: 405 AAEE 408
           +A++
Sbjct: 168 SADQ 171



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPII 365
           +EL D M  +GC PN VTYN  I       ++D+A E++  +   + G  P + +Y  ++
Sbjct: 1   MELIDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLP--SRGCKPNTVNYNTVL 58

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
             LC   R ++A + L E+V     P E T  ++ + L+
Sbjct: 59  KGLCSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLS 97


>gi|255660914|gb|ACU25626.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 481

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 137/282 (48%), Gaps = 22/282 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F H+  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHDRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 175 L-IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L I   G+ G+V E++  F +M++      + +Y+ +   + R G F  A+    +M   
Sbjct: 85  LMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
           G    P  +T+ ++I  +   G M T  R             F  M  +   PDVV YN 
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSGKMDTAMR------------FFEDMKSREISPDVVTYNT 190

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +I+GC +  +++ A + F +M  K   P  VTY + I+ Y  V+++  A+ ++ +M+   
Sbjct: 191 MINGCYRVKKMDEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVHDALRLVEEMK--G 248

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           +G+ P + +Y+ ++  LC AG++ EA+  L E+VD    P++
Sbjct: 249 YGIKPNAITYSTLLPGLCNAGKMSEAQSILKEMVDKYIAPKD 290



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 101/239 (42%), Gaps = 31/239 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--LMIDSYGKAGIVQESVKLFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + +++ 
Sbjct: 109 LGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKMDT 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A+  F+DM  +   P+ VTYN+ I     V ++D+A +   +M+  N   PT  +YT +I
Sbjct: 169 AMRFFEDMKSREISPDVVTYNTMINGCYRVKKMDEAEKYFVEMKGKNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRI 420
                  +V +A   + E+   G  P   TY      +C+A   +E  S+L + + K I
Sbjct: 228 KGYVSVDQVHDALRLVEEMKGYGIKPNAITYSTLLPGLCNAGKMSEAQSILKEMVDKYI 286



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 22/213 (10%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK +  +P+   Y+ ++  LC  G  ++A+ +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVHDALRLVEEMKGYGIKPNAITYSTLLPGLCNAGKMSEAQSIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS C+ G            +  A  + + M+      + 
Sbjct: 279 KEM-VDKYIAPKDNSIFMRLISSQCEAG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCI--PNRV------TYNSFIRYYSVVNEID 339
             Y  LI+  CK  + +RA++L D + +K  I  P          YN  I Y     +  
Sbjct: 327 GHYGVLIENFCKAGQHDRAVKLLDKLIEKDIILRPQSTLHMEPSAYNPMIEYLCSNGQTA 386

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           KA  ++R++  L  GV  +++   +I    + G
Sbjct: 387 KAEALVRQLLKL--GVQDTTALNTLIRGYAQEG 417



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 92/251 (36%), Gaps = 60/251 (23%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++ A+  F  MK     PDV  YN +IN   RV   ++A      +E+ G    P V 
Sbjct: 164 GKMDTAMRFFEDMKSREISPDVVTYNTMINGCYRVKKMDEAEKYF--VEMKGKNIEPTVV 221

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TYT LI  Y               ++ +A  L   M   G  P+ + Y+ L+ G C   +
Sbjct: 222 TYTTLIKGYVSVD-----------QVHDALRLVEEMKGYGIKPNAITYSTLLPGLCNAGK 270

Query: 303 IERALELFDDMNKKGCIPNRVT------------------------------------YN 326
           +  A  +  +M  K   P   +                                    Y 
Sbjct: 271 MSEAQSILKEMVDKYIAPKDNSIFMRLISSQCEAGNLDAAADVLKAMIRLSVPTEAGHYG 330

Query: 327 SFIRYYSVVNEIDKAIEMMRKM---------QNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             I  +    + D+A++++ K+         Q+  H  P  S+Y P+I  LC  G+  +A
Sbjct: 331 VLIENFCKAGQHDRAVKLLDKLIEKDIILRPQSTLHMEP--SAYNPMIEYLCSNGQTAKA 388

Query: 378 RDFLAELVDGG 388
              + +L+  G
Sbjct: 389 EALVRQLLKLG 399


>gi|255660906|gb|ACU25622.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 484

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L D+ ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDIPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTI 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPTD 290



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC      +AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEARSIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS C  G            +  A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLISSQCNSG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGVLIENFCKAGQYDQAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L+  G
Sbjct: 362 QSTL-HLEP--SAYNPMIEYLCNNGQAAKAEALVRQLLKLG 399


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/252 (32%), Positives = 123/252 (48%), Gaps = 20/252 (7%)

Query: 160 RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
           RRG    V T   T LIK L  E  + EA   F RM++  C P+V  Y  +I  LC +GN
Sbjct: 154 RRGYIPDVVT--FTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGN 211

Query: 220 FNKA----RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EANHL 274
            N A    + +L       F C P+V +Y+I+I   CK G             W EA  L
Sbjct: 212 INIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGN------------WEEAICL 259

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           F  M+ +G  P+VV ++ LID  CK  ++ +A +L + M + G +PN  TY S I+ + +
Sbjct: 260 FNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCL 319

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
           V +++ A E+   M +  +  P   SY  +I+  C+  +V EA     E++  G  P   
Sbjct: 320 VGDLNSAKELFVSMPSKGYE-PDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVK 378

Query: 395 TYKLVCDALNAA 406
           T  ++  AL  A
Sbjct: 379 TSGVLLKALFLA 390



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 128/282 (45%), Gaps = 35/282 (12%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQ------FRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           LIK L   G +N AL     M        F CRP+V +Y+++I+ LC+VGN+ +A  L  
Sbjct: 202 LIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFN 261

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW------------------- 269
           +M   G +  P+V T+++LI   CK G     +K +   I                    
Sbjct: 262 EMVDQGVQ--PNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCL 319

Query: 270 -----EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
                 A  LF  M  KG+ PDV++YN LI+G CKT ++E A++LF++M   G  P+  T
Sbjct: 320 VGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKT 379

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI-IHALCEAGRVLEARDFLAE 383
               ++   +  ++D A E+ R ++   + +P       I +  LC+ G + EA     E
Sbjct: 380 SGVLLKALFLAGKVDDAKELFRVIK--PYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNE 437

Query: 384 LVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           L          T+  + D L  A +     +   K   +GI+
Sbjct: 438 LESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQ 479



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 18/206 (8%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
            ++++N ++  L ++ ++++   L +QM L G    PD+ T  ILI+  C          
Sbjct: 90  SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLW--PDLLTLNILINCLCNV-------- 139

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               RI E       ++ +G++PDVV +  LI G C  +RI  A +LF  M K GC PN 
Sbjct: 140 ---NRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNV 196

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQN-----LNHGVPTSSSYTPIIHALCEAGRVLEA 377
           VTY + I+    +  I+ A++  ++M N     + +  P   SY+ II  LC+ G   EA
Sbjct: 197 VTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEA 256

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
                E+VD G  P   T+ ++ D L
Sbjct: 257 ICLFNEMVDQGVQPNVVTFSVLIDML 282



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 110/237 (46%), Gaps = 30/237 (12%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++  + + +M      PD+   N++IN LC V   N+    +  +   G+   PDV T+T
Sbjct: 108 SQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGY--IPDVVTFT 165

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            LI   C           +  RI EA  LF  M   G  P+VV Y  LI G C    I  
Sbjct: 166 TLIKGLC-----------VEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINI 214

Query: 306 ALELFDDMNKK------GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTS 358
           AL+   +M          C PN ++Y+  I     V   ++AI +  +M  ++ GV P  
Sbjct: 215 ALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEM--VDQGVQPNV 272

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK-------LVCDALNAAEE 408
            +++ +I  LC+ G+V++A+  L  ++  G VP  +TY        LV D LN+A+E
Sbjct: 273 VTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGD-LNSAKE 328



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 121/279 (43%), Gaps = 35/279 (12%)

Query: 150 GLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           G W+       +M  +G    V T SV  LI +L +EG V +A      M Q    P+++
Sbjct: 251 GNWEEAICLFNEMVDQGVQPNVVTFSV--LIDMLCKEGQVIKAKKLLEMMIQIGIVPNLF 308

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK------------ 253
            Y  +I   C VG+ N A+ L   M   G+   PDV +Y +LI+ YCK            
Sbjct: 309 TYTSLIKGFCLVGDLNSAKELFVSMPSKGYE--PDVISYNMLINGYCKTLKVEEAMKLFN 366

Query: 254 ----YGMQTGCRKA--------IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
                GM    + +        +  ++ +A  LFR++       D+      +DG CK  
Sbjct: 367 EMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNG 426

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
            I  A++LF+++       +  T+   I       +++ A E+  K+     G+ P + +
Sbjct: 427 YIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYE--EGIQPDAMA 484

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           Y+ +IH  C+ G+V +A     ++ + G  P   TY ++
Sbjct: 485 YSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSIL 523



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 111/252 (44%), Gaps = 14/252 (5%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           ++  LI  L     +NE LA    + +    PDV  +  +I  LC      +A  L  +M
Sbjct: 128 TLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRM 187

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN-HLFRLMLFKGFVPDVVA 289
           +  G  C P+V TY  LI   C  G      K  +  + + + ++F         P+V++
Sbjct: 188 QKLG--CTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCR------PNVIS 239

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y+ +IDG CK    E A+ LF++M  +G  PN VT++  I       ++ KA +++  M 
Sbjct: 240 YSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMI 299

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNA 405
            +   VP   +YT +I   C  G +  A++    +   G  P   +Y ++    C  L  
Sbjct: 300 QIGI-VPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKV 358

Query: 406 AEEPSLLDDGLR 417
            E   L ++ L 
Sbjct: 359 EEAMKLFNEMLH 370



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 18/229 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
              +M   G    V TS V  L+K L   G V++A   F  +K +    D+    + ++ 
Sbjct: 364 LFNEMLHVGMWPDVKTSGV--LLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 421

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEAN 272
           LC+ G   +A  L  ++E   +    D+ T+  LI   CK G ++T          WE  
Sbjct: 422 LCKNGYIFEAMKLFNELE--SYNMKLDIETFGCLIDGLCKAGKLETA---------WE-- 468

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            LF  +  +G  PD +AY+ +I G CK  ++++A  LF  M + GC P+ +TY+  +R +
Sbjct: 469 -LFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGF 527

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
              N+++K ++++ +M   +   P    Y  +   +C+  +  E  D L
Sbjct: 528 YESNKLEKVVQLLHRMIEKDVW-PDDGIYAIVEDMVCKDEKYKEWLDLL 575



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 6/159 (3%)

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A+  F LM+       + ++N L+ G  K     +   L+  M+  G  P+ +T N  I
Sbjct: 79  QAHQFFDLMM-----RSIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILI 133

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                VN I++ +  M  +    + +P   ++T +I  LC   R++EA      +   G 
Sbjct: 134 NCLCNVNRINEGLAAMAGIMRRGY-IPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGC 192

Query: 390 VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRF 428
            P   TY  +   L A    ++     ++ + D   Y F
Sbjct: 193 TPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVF 231


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 126/296 (42%), Gaps = 36/296 (12%)

Query: 138 MGIVFARGNNVKG--LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM 195
           M  VF  G   KG  L++ +K       G      S + LI  L + G   +    FY M
Sbjct: 558 MDCVFKAGEIEKGRALFEEIK-----AQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEM 612

Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
           K+     D  AYN+VI+  C+ G  NKA  LLE+M+  G +  P V TY  +I    K  
Sbjct: 613 KEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQ--PTVVTYGSVIDGLAKID 670

Query: 256 --------MQTGCRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAYN 291
                    +    KA+                  RI EA  +   ++ KG  P+   +N
Sbjct: 671 RLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWN 730

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
           CL+D   K   I+ AL  F +M    C PN VTY+  +     V + +KA    ++MQ  
Sbjct: 731 CLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQ-- 788

Query: 352 NHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
             G+ P + +YT +I  L   G VLEA+D        G +P    Y  + + L+ A
Sbjct: 789 KQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNA 844



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 115/257 (44%), Gaps = 21/257 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V   W F  ++  +  G +    + T +I VL +   V+EA+  F  +   +  
Sbjct: 282 FGKVGKVDMAWKFFHEL--KSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSV 339

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P VYAYN +I     VG FN+A  LLE+ +  G  C P V  Y  +++   + G      
Sbjct: 340 PCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKG--CIPSVIAYNCILTCLGRKG------ 391

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  +   M      P++ +YN LID  CK   +E AL++ D M + G  PN
Sbjct: 392 -----KVEEALRILEAMKMDA-APNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPN 445

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV--PTSSSYTPIIHALCEAGRVLEARD 379
            +T N  I        +D+A  +      L+H V  P S ++  +I  L   G+V +A  
Sbjct: 446 IITVNIMIDRLCKAQRLDEACSIFL---GLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYM 502

Query: 380 FLAELVDGGSVPREYTY 396
              +++D G  P    Y
Sbjct: 503 LYEKMLDSGQTPNAVVY 519



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 125/292 (42%), Gaps = 20/292 (6%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A  ++ WVER     H+      + ++ AR  N++ L   L++MS  G G     S+ TC
Sbjct: 115 ALHYFRWVERKTKQLHSPEAYNALLMLMARTRNLEYLEQILEEMSMAGFG----PSNNTC 170

Query: 175 --LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             ++    +   + EA      M++F+ RP   AY  +I AL      +    LL QM+ 
Sbjct: 171 IEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQE 230

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G+     V+ +T LI  + + G           R+  A  L   M    F  D+V YN 
Sbjct: 231 IGYEVT--VHLFTTLICVFAREG-----------RVDAALSLLDEMKSNSFNADLVLYNV 277

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
            ID   K  +++ A + F ++  +G +P+ VT+ S I        +D+A+E+  ++ + N
Sbjct: 278 CIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDS-N 336

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
             VP   +Y  +I      G+  EA   L      G +P    Y  +   L 
Sbjct: 337 KSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLG 388



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 106/244 (43%), Gaps = 15/244 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  VT    T LI V   EG V+ AL+    MK      D+  YNV I+   +VG  + A
Sbjct: 232 GYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMA 291

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
                +++  G    PD  T+T +I   CK             R+ EA  LF  +     
Sbjct: 292 WKFFHELKSQGL--VPDDVTFTSMIGVLCK-----------AERVDEAVELFEELDSNKS 338

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
           VP V AYN +I G     +   A  L +   +KGCIP+ + YN  +       ++++A+ 
Sbjct: 339 VPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALR 398

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           ++  M+      P  +SY  +I  LC+AG +  A      + + G  P   T  ++ D L
Sbjct: 399 ILEAMKM--DAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRL 456

Query: 404 NAAE 407
             A+
Sbjct: 457 CKAQ 460



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 13/150 (8%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +  CL+  L +   ++EAL  F  MK  +C P+   Y++++N LC+V  FNKA    +
Sbjct: 726 TYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQ 785

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M+  G +  P+  TYT +IS   + G            + EA  LF      G +PD  
Sbjct: 786 EMQKQGLK--PNTITYTTMISGLARVG-----------NVLEAKDLFERFKSSGGIPDSA 832

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGC 318
            YN +I+G     +   A  LF++   KGC
Sbjct: 833 CYNAMIEGLSNANKAMDAYILFEETRLKGC 862



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 114/278 (41%), Gaps = 34/278 (12%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +  L+   R+G   + +  +  C++  LG +G V EAL     MK     P++ +YN++I
Sbjct: 362 YSLLERQKRKGC--IPSVIAYNCILTCLGRKGKVEEALRILEAMK-MDAAPNLTSYNILI 418

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAI------ 264
           + LC+ G    A  + + M+  G    P++ T  I+I   CK   +   C   +      
Sbjct: 419 DMLCKAGELEAALKVQDSMKEAGLF--PNIITVNIMIDRLCKAQRLDEACSIFLGLDHKV 476

Query: 265 -----------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
                              ++ +A  L+  ML  G  P+ V Y  LI    K  R E   
Sbjct: 477 CTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGH 536

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR--KMQNLNHGVPTSSSYTPII 365
           +++ +M  +GC P+ +  N+++       EI+K   +    K Q L    P   SY+ +I
Sbjct: 537 KIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLT---PDVRSYSILI 593

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           H L + G   +      E+ + G       Y +V D  
Sbjct: 594 HGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGF 631


>gi|255660898|gb|ACU25618.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 484

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+ZG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKZGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKZGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G            +  A  + + M       + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLISSHCKSG-----------NLDAAADVLKAMXRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGVLIENFCKXGQYDKAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L+  G
Sbjct: 362 QSTL-HLEP--SAYNPMIEYLCNNGQAAKAETLVRQLLKLG 399


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 134/287 (46%), Gaps = 22/287 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +  G  ++ +   +++M  +G    L T +S+   I +L + G V++A      M     
Sbjct: 20  YCLGGELQKVLKLIQEMQMKGLKPNLYTYNSI---ILLLCKSGKVDDAERVLREMINQGI 76

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD   Y  +I+  C++GN   A  L ++ME    R  PD   YT +I   C+ G     
Sbjct: 77  VPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQ--RIVPDFIAYTAVICGLCRCG----- 129

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA+ +F  M  +G  PD V Y  LIDG CK+  +E+A  L + M + G  P
Sbjct: 130 ------KMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTP 183

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VTY +       + ++D A E++ +M  + L   + T   Y  +++ LC++G + +A 
Sbjct: 184 NVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICT---YNSLVNGLCKSGNIRQAV 240

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
             + E+   G  P   T+  + DA     E     + LR+ +  G++
Sbjct: 241 KLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQ 287



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 16/203 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV +Y+ VIN  C  G   K   L+++M++ G +  P++YTY  +I   CK G      
Sbjct: 8   PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLK--PNLYTYNSIILLLCKSG------ 59

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ +A  + R M+ +G VPD V Y  LIDG CK   I+ A +LFD+M K+  +P+
Sbjct: 60  -----KVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPD 114

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            + Y + I       ++ +A ++  KM   + GV P   +YT +I   C++G + +A   
Sbjct: 115 FIAYTAVICGLCRCGKMMEADKVFNKM--FSRGVEPDEVTYTTLIDGYCKSGEMEKAFSL 172

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
             ++V  G  P   TY  + D L
Sbjct: 173 HNQMVQSGLTPNVVTYTALADGL 195



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 16/219 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L   L + G V+ A    + M     + ++  YN ++N LC+ GN  +A  L+E+M
Sbjct: 187 TYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEM 246

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E+ G    PD  T+T L+ +YCK G            + +A+ L R ML +G  P V+ +
Sbjct: 247 EVAGMY--PDTITFTTLMDAYCKTG-----------EMVKAHELLREMLDRGLQPTVITF 293

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L++G C +  +E    L   M +KG +PN  TYNS ++ Y + N +    E+ + M  
Sbjct: 294 NVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGM-- 351

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              GV P S++Y  +I   C+A  + EA     E+ + G
Sbjct: 352 CARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKG 390



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 3/149 (2%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M F+G  PDVV+Y+ +I+G C    +++ L+L  +M  KG  PN  TYNS I       +
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 338 IDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +D A  ++R+M  +N G VP +  YT +I   C+ G +  A     E+     VP    Y
Sbjct: 61  VDDAERVLREM--INQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAY 118

Query: 397 KLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
             V   L    +    D    K    G+E
Sbjct: 119 TAVICGLCRCGKMMEADKVFNKMFSRGVE 147



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 26/212 (12%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G  +   +   L+  L + G + +A+     M+     PD   +  +++A C+ G   
Sbjct: 213 GKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMV 272

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM-QTGCR------------------- 261
           KA  LL +M   G +  P V T+ +L++ +C  GM + G R                   
Sbjct: 273 KAHELLREMLDRGLQ--PTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNS 330

Query: 262 ----KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                 IR  +     +++ M  +G +PD   YN LI G CK   ++ A  L  +M +KG
Sbjct: 331 LMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKG 390

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
                 +YNS I+ +    +I +A E+  +M+
Sbjct: 391 FNLTASSYNSIIKGFFKKKKISEARELFEEMR 422



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 14/122 (11%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN++I   C+  N  +A FL ++M   GF      Y   I               
Sbjct: 358 PDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFF----------- 406

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              +++I EA  LF  M  +G   D   YN  +D       +E ALEL D+   + C  N
Sbjct: 407 --KKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDEA-IENCFLN 463

Query: 322 RV 323
           R+
Sbjct: 464 RI 465


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 16/215 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L +EG V +A +    M +    P+V  Y  +++    V   NKA+ +   + L G
Sbjct: 270 LIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRG 329

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V++Y+++I+  CK  M           + EA  LF+ M  K   P+ V Y+ LI
Sbjct: 330 --VTPNVHSYSVMINGLCKNKM-----------VDEAVKLFKEMHLKNMTPNTVTYSSLI 376

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG CK+ RI    +L D++N +G   N +TYNS +      +++DKAI ++ KM+  + G
Sbjct: 377 DGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMK--DEG 434

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           + P  S+YT ++  LC+ GR+ +A+    +L+  G
Sbjct: 435 IQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKG 469



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 13/180 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + LI  L + G +++       +       ++  YN ++N LC+    +KA  LL 
Sbjct: 369 TVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLT 428

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M+  G +  PD+ TYT L+   CK G           R+ +A  +++ +L KG+  ++ 
Sbjct: 429 KMKDEGIQ--PDMSTYTTLVDGLCKNG-----------RLKDAQRIYQDLLCKGYPLNIR 475

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  +I+G CK    + AL L   M   GC+P+ VTY + I      N+  KA++++R+M
Sbjct: 476 MYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREM 535



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 13/218 (5%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +N A +   ++ +   +PD    N ++  LC  G   +A    + +    F    D  +Y
Sbjct: 104 LNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHL--DQVSY 161

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI+  CK G      + +R+       +  L+L +   PDV+ Y  +ID  CK   + 
Sbjct: 162 GTLINGLCKSGETRAALQLLRK-------IEGLLLVR---PDVIMYTAIIDSFCKDKLVI 211

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A +L+ +M  K   PN VT+NS I  + +V ++ +A+ ++ +M +LN+  P   ++  +
Sbjct: 212 DAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEM-SLNNVNPNVYTFNIL 270

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           I  LC+ G V +A   L+ ++  G  P   TY  + D 
Sbjct: 271 IDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDG 308



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 106/216 (49%), Gaps = 20/216 (9%)

Query: 185 VNEALATFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           +++A+++F  +       P ++ +N ++++L ++ +F  A    +QMEL G +  P+++T
Sbjct: 33  LDDAVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQ--PEMFT 90

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKT 300
           + ILI+ +                + + N  F +   +L  G+ PD V  N L+ G C  
Sbjct: 91  FNILINCF--------------SHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLN 136

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            +++ AL   D + +K    ++V+Y + I       E   A++++RK++ L    P    
Sbjct: 137 GKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIM 196

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           YT II + C+   V++A D  +E++     P   T+
Sbjct: 197 YTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTF 232



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 101/215 (46%), Gaps = 14/215 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S + +I  L +  +V+EA+  F  M      P+   Y+ +I+ LC+ G  +    L++++
Sbjct: 336 SYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEI 395

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G   P ++ TY  L++  CK             ++ +A  L   M  +G  PD+  Y
Sbjct: 396 NNRG--QPANIITYNSLLNGLCK-----------NHQVDKAIALLTKMKDEGIQPDMSTY 442

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             L+DG CK  R++ A  ++ D+  KG   N   Y   I         D+A+ ++ +M++
Sbjct: 443 TTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMED 502

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            N  +P + +Y  +I AL +  +  +A   L E++
Sbjct: 503 -NGCMPDAVTYETLISALFKNNKNGKAVKLLREMI 536



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 17/171 (9%)

Query: 144 RGNNVKGLWDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           +   +  +WD + +++ RG    ++T +S   L+  L +   V++A+A   +MK    +P
Sbjct: 381 KSGRISDVWDLIDEINNRGQPANIITYNS---LLNGLCKNHQVDKAIALLTKMKDEGIQP 437

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D+  Y  +++ LC+ G    A+ + + +   G+  P ++  YT++I+  CK G       
Sbjct: 438 DMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGY--PLNIRMYTVMINGLCKEGF------ 489

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                  EA  L   M   G +PD V Y  LI    K  +  +A++L  +M
Sbjct: 490 -----FDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREM 535


>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 484

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK------- 262
           +I  L R    N AR +L  M   G     D++   ++I SY K G+     K       
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKEGIVQESVKMFQKMEE 108

Query: 263 -AIRRRIWEANHLFRL----------------MLFKGFVPDVVAYNCLIDGCCKTYRIER 305
             + R I   N LF++                ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G            +  A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLISSHCKSG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGXLIENFCKXGQYDKAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L   G
Sbjct: 362 QSTL-HLEP--SAYNPMIEYLCNNGQAXKAETLVRQLXKLG 399


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 123/294 (41%), Gaps = 32/294 (10%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M  VF  G   KG   F +  +R   G L  T S + LI  L + G   E    +Y MK 
Sbjct: 417 MDCVFKAGETEKGRALFEEIKAR---GFLPDTRSYSILIHSLVKAGFARETYELYYAMKD 473

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-- 255
             C  D  AYN VI+  C+ G  NKA  LLE+M+  G    P V TY  ++    K    
Sbjct: 474 QGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHH--PTVVTYGSVVDGLAKIDRL 531

Query: 256 ------MQTGCRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAYNCL 293
                  +      I                  R+ EA  +   M+ KG  P+V  +NCL
Sbjct: 532 DEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCL 591

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +DG  K   I  AL  F  M    C PN++TY   I     V + +KA    ++MQ    
Sbjct: 592 LDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQ--KQ 649

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           G+ P + +YT +I  L ++G V +A          G +P   +Y  + + L+ A
Sbjct: 650 GLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIA 703



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 124/278 (44%), Gaps = 25/278 (8%)

Query: 150 GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
            L++ ++++    N  L+TT     LI+V   EG V+ AL+    MK      D+  YNV
Sbjct: 82  ALFNQMQELGYEVNVHLLTT-----LIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNV 136

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
            I+   +VG  + A     +M+  G    PD  TYT ++   CK             R+ 
Sbjct: 137 CIDCFGKVGKVDMAWKFFHEMKANGL--VPDDVTYTSMMGVLCK-----------ANRLD 183

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA  +F  M     VP   AYN +I G     + + A  L +    KGCIP+ V YN  +
Sbjct: 184 EAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCIL 243

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                  + DKA+ +  +M+     +P   +Y  II  LC+AG V  A      + + G 
Sbjct: 244 TCLGKKGKTDKALRIFEEMK--RDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGL 301

Query: 390 VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYR 427
            P   T  ++ D L  A++   LD+     I +G++Y+
Sbjct: 302 FPNVRTINIMIDRLCKAQK---LDEAC--SIFEGMDYK 334



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 112/263 (42%), Gaps = 20/263 (7%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCR 201
           R  N   L   L +MS  G G     ++ TC  L+    +   + EA      M+ F+ R
Sbjct: 3   RTRNFDYLEQILGEMSIAGFG----PTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFR 58

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P   AY  +I AL  VG  ++   L  QM+  G+    +V+  T LI  + + G      
Sbjct: 59  PAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEV--NVHLLTTLIRVFSREG------ 110

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+  A  L   M    F  D+V YN  ID   K  +++ A + F +M   G +P+
Sbjct: 111 -----RVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPD 165

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VTY S +      N +D+A+E+  +M+  N  VP + +Y  +I     AG+  EA   L
Sbjct: 166 DVTYTSMMGVLCKANRLDEAVEIFEQMEQ-NRQVPCAYAYNTMIMGYGSAGKFDEAYSLL 224

Query: 382 AELVDGGSVPREYTYKLVCDALN 404
                 G +P    Y  +   L 
Sbjct: 225 ERQRAKGCIPSVVAYNCILTCLG 247



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 118/279 (42%), Gaps = 26/279 (9%)

Query: 122 VERFFDFFH---------NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           V+  + FFH         +++T   M  V  + N +    +  + M +  N ++    + 
Sbjct: 147 VDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQ--NRQVPCAYAY 204

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             +I   G  G  +EA +   R +   C P V AYN ++  L + G  +KA  + E+M+ 
Sbjct: 205 NTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKR 264

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
                 P++ TY I+I   CK G      K +R  + EA          G  P+V   N 
Sbjct: 265 DAM---PNLPTYNIIIGMLCKAGNVEAAFK-VRDAMKEA----------GLFPNVRTINI 310

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +ID  CK  +++ A  +F+ M+ K C P+  T+ S I        +D A  +  +M + +
Sbjct: 311 MIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDAD 370

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
             +P    YT +I    +  R  +      E++  G  P
Sbjct: 371 Q-IPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSP 408



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 119/268 (44%), Gaps = 28/268 (10%)

Query: 160 RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
           +R  G + +  +  C++  LG++G  ++AL  F  MK+    P++  YN++I  LC+ GN
Sbjct: 227 QRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKR-DAMPNLPTYNIIIGMLCKAGN 285

Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY-----------GMQ---------TG 259
              A  + + M+  G    P+V T  I+I   CK            GM          T 
Sbjct: 286 VEAAFKVRDAMKEAGLF--PNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATF 343

Query: 260 CRK----AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
           C        + R+ +A  ++  ML    +P+VV Y  LI    K  R E   +++ +M +
Sbjct: 344 CSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMR 403

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
            GC P+ +  N+++       E +K   +  +++     +P + SY+ +IH+L +AG   
Sbjct: 404 SGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGF-LPDTRSYSILIHSLVKAGFAR 462

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           E  +    + D G V     Y  V D  
Sbjct: 463 ETYELYYAMKDQGCVLDTRAYNTVIDGF 490



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 103/233 (44%), Gaps = 21/233 (9%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           + NG  +     + LI   G+ G V+EA      M Q    P+VY +N +++ L +    
Sbjct: 542 KSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEI 601

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           N+A    + M+    +C P+  TY ILI+  CK            R+  +A   ++ M  
Sbjct: 602 NEALVCFQSMK--DLKCTPNQITYCILINGLCKV-----------RKFNKAFVFWQEMQK 648

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G  P+ + Y  +I G  K+  + +A  LF+     G IP+  +YN+ I   S+ N    
Sbjct: 649 QGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALD 708

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           A ++  + +     +   S +T    AL +A   L   + L +    G+V RE
Sbjct: 709 AYQLFEETR-----LKGCSIHTKTCVALLDA---LHKAECLEQAAIVGAVLRE 753



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 14/183 (7%)

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           + R  NF+    +L +M + GF   P  YT   L++S         C K+  R++ EA  
Sbjct: 1   MVRTRNFDYLEQILGEMSIAGF--GPTNYTCVELVAS---------CVKS--RKLIEAFD 47

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L ++M    F P   AY  LI    +    +R L LF+ M + G   N     + IR +S
Sbjct: 48  LLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFS 107

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
               +D A+ ++ +M++ N        Y   I    + G+V  A  F  E+   G VP +
Sbjct: 108 REGRVDAALSLLDEMKS-NTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDD 166

Query: 394 YTY 396
            TY
Sbjct: 167 VTY 169


>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 134/290 (46%), Gaps = 16/290 (5%)

Query: 110 LGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTT 169
           LG + A  F+ W +    F H+  +   +  +  R      LWDFL +     +   +T 
Sbjct: 86  LGFS-AHRFFLWAKSIPGFQHSVQSFHILVEILGRSKQFAILWDFLIETRESDSSCKITN 144

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
                +        L + A+ +F RM +F  +P +   ++++  LC+  +  +A+   +Q
Sbjct: 145 EIFWIIFTAYSRADLPDGAIRSFVRMDEFGIKPSIIDVDLLLYTLCKKKHVRQAQQFFDQ 204

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           ++           TY+ILI+ + K G  +G          +A  LF  ML +G   D++A
Sbjct: 205 VKSHFLLTTK---TYSILINGWGKIG-DSG----------KARELFDAMLEQGCHVDLLA 250

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN L++  CK   ++ A++  +DM  K   P+  TY+ FIR Y   N +  A  ++ KM+
Sbjct: 251 YNNLLEALCKGGHVDEAMDFLNDMLSKKVEPDAFTYSIFIRSYCDANNVHSAFGVLDKMR 310

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             N  +P   +Y  II  LC+  +V EA   L E++  G  P  ++Y  +
Sbjct: 311 RCN-LLPNVFTYNCIIKRLCKIKKVEEAYQLLDEMISSGLKPDTWSYNAI 359



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 123/258 (47%), Gaps = 28/258 (10%)

Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           L+TT + + LI   G+ G   +A   F  M +  C  D+ AYN ++ ALC+ G+ ++A  
Sbjct: 210 LLTTKTYSILINGWGKIGDSGKARELFDAMLEQGCHVDLLAYNNLLEALCKGGHVDEAMD 269

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCK-------YGMQTGCRKA------------IRR 266
            L  M     +  PD +TY+I I SYC        +G+    R+             I+R
Sbjct: 270 FLNDM--LSKKVEPDAFTYSIFIRSYCDANNVHSAFGVLDKMRRCNLLPNVFTYNCIIKR 327

Query: 267 -----RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  L   M+  G  PD  +YN +    C    + RAL+L   M K  C P+
Sbjct: 328 LCKIKKVEEAYQLLDEMISSGLKPDTWSYNAIQAYHCDHCEVNRALKLISRMEKDVCFPD 387

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC-EAGRVLEARDF 380
           R TYN  ++    +   DKA E+   M +     P+ S+Y+ +IH LC + G++ EA  +
Sbjct: 388 RHTYNMVLKLLIRIGRFDKATEVWECMGD-KKFYPSVSTYSVMIHGLCKKKGKLEEACKY 446

Query: 381 LAELVDGGSVPREYTYKL 398
            A ++D G  P + T ++
Sbjct: 447 FAMMIDEGIPPYDTTIEM 464



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 31/207 (14%)

Query: 144 RGNNVKGLWDFLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           +G +V    DFL DM S++   +  T S     I+   +   V+ A     +M++    P
Sbjct: 260 KGGHVDEAMDFLNDMLSKKVEPDAFTYS---IFIRSYCDANNVHSAFGVLDKMRRCNLLP 316

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           +V+ YN +I  LC++    +A  LL++M   G +  PD ++Y  + + +C +       K
Sbjct: 317 NVFTYNCIIKRLCKIKKVEEAYQLLDEMISSGLK--PDTWSYNAIQAYHCDHCEVNRALK 374

Query: 263 AIRR------------------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
            I R                        R  +A  ++  M  K F P V  Y+ +I G C
Sbjct: 375 LISRMEKDVCFPDRHTYNMVLKLLIRIGRFDKATEVWECMGDKKFYPSVSTYSVMIHGLC 434

Query: 299 KTY-RIERALELFDDMNKKGCIPNRVT 324
           K   ++E A + F  M  +G  P   T
Sbjct: 435 KKKGKLEEACKYFAMMIDEGIPPYDTT 461


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 30/244 (12%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  S T L++ L  E    +A+     M+    RPDV  Y  +I  LC   + +KA  LL
Sbjct: 112 TAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELL 171

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG----------------------MQTGCRKAIR 265
            +M   G    P+V  Y+ L+  YCK G                      M TG   ++ 
Sbjct: 172 REMCESGIE--PNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLC 229

Query: 266 R--RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
           R  ++ +A  +   M+ +G  P+VV YN LI+  CK   ++ A+ L ++M +KG   + V
Sbjct: 230 REGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAV 289

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA---RD 379
           TYN+ I   S V E+D+A+ ++ +M +    V P   ++  +IH LC+ GR+ +A   RD
Sbjct: 290 TYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRD 349

Query: 380 FLAE 383
            +AE
Sbjct: 350 MMAE 353



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 16/239 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   ++  L  +G   +A     R+     RP   +Y  ++ ALC      +A  LL  M
Sbjct: 80  SYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDM 139

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  G R  PDV TY  LI   C               + +A  L R M   G  P+VV Y
Sbjct: 140 QASGVR--PDVVTYGTLIRGLCDAA-----------DVDKAVELLREMCESGIEPNVVVY 186

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           +CL+ G CK  R E   ++F++M+ +G  P+ V Y   I       ++ KA ++M KM  
Sbjct: 187 SCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKM-- 244

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           +  G+ P   +Y  +I+++C+ G V EA      +++ G      TY  +   L+   E
Sbjct: 245 MERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLE 303



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 120/252 (47%), Gaps = 20/252 (7%)

Query: 150 GLWDFLKDMSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           G W+ +  +    +G  +    V  T LI  L  EG V +A     +M +    P+V  Y
Sbjct: 197 GRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTY 256

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           NV+IN++C+ G+  +A  L   M   G     D  TY  LI         TG    +   
Sbjct: 257 NVLINSMCKEGSVKEAMSLRNNMLEKGVAL--DAVTYNTLI---------TGLSGVLE-- 303

Query: 268 IWEANHLFRLMLFKGFV--PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           + EA  L   M+    +  P+VV +N +I G CKT R+ +A ++ D M + GC  N VT+
Sbjct: 304 MDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTF 363

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           N  I     V+++ KA+E+M +M   + G+ P S +Y+ +I+  C+  +V  A   L+++
Sbjct: 364 NLLIGGLLRVHKVKKAMELMDEMA--SSGLEPDSFTYSILINGFCKMWQVDRAESLLSKM 421

Query: 385 VDGGSVPREYTY 396
              G  P    Y
Sbjct: 422 RRDGIEPELVHY 433



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 23/231 (9%)

Query: 203 DVYAYNVVINALCRVGN-FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           D  +YN V+ ALCR G   + A FLL  M        P   +YT L+ + C         
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVM---AHETRPTAVSYTTLMRALCA-------- 125

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               RR  +A  L R M   G  PDVV Y  LI G C    +++A+EL  +M + G  PN
Sbjct: 126 ---ERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPN 182

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            V Y+  ++ Y      +   ++  +M     G+ P    YT +I +LC  G+V +A   
Sbjct: 183 VVVYSCLLQGYCKAGRWECVSKVFEEMSG--RGIEPDVVMYTGLIDSLCREGKVKKATQV 240

Query: 381 LAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIR-DGIEY 426
           + ++++ G  P   TY ++    C   +  E  SL ++ L K +  D + Y
Sbjct: 241 MDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTY 291



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 123/291 (42%), Gaps = 46/291 (15%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R   VK     +  M  RG    V T +V  LI  + +EG V EA++    M +    
Sbjct: 228 LCREGKVKKATQVMDKMMERGLEPNVVTYNV--LINSMCKEGSVKEAMSLRNNMLEKGVA 285

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            D   YN +I  L  V   ++A  LLE+M        P+V T+  +I   CK G      
Sbjct: 286 LDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTG------ 339

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A  +  +M   G   ++V +N LI G  + +++++A+EL D+M   G  P+
Sbjct: 340 -----RMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPD 394

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQ------NLNHGVPTSSS--------------- 360
             TY+  I  +  + ++D+A  ++ KM+       L H +P  ++               
Sbjct: 395 SFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFD 454

Query: 361 ------------YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
                       Y+ +IH  C       A +FL  ++D G +P   TY ++
Sbjct: 455 EMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSML 505



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 119/296 (40%), Gaps = 37/296 (12%)

Query: 85  KEAYNIANNVLVLGPAAYRDP-QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFA 143
           KEA ++ NN+L  G A        +  GL+   E    +    +  H E   +   + F 
Sbjct: 270 KEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTF- 328

Query: 144 RGNNVKGLWDF--------LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM 195
             + + GL           ++DM    NG      +   LI  L     V +A+     M
Sbjct: 329 -NSVIHGLCKTGRMRQAFQVRDMMAE-NGCACNLVTFNLLIGGLLRVHKVKKAMELMDEM 386

Query: 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
                 PD + Y+++IN  C++   ++A  LL +M   G    P++  Y  L+++ C+ G
Sbjct: 387 ASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIE--PELVHYIPLLAALCEQG 444

Query: 256 MQTGCRK----------------------AIRRRIWE-ANHLFRLMLFKGFVPDVVAYNC 292
           M    R                       A R R  + A    + ML +G +PD V Y+ 
Sbjct: 445 MMEQARNFFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSM 504

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           LI+    +  +  A  +   M   G +P+   ++S I+ Y    + +K +E++R+M
Sbjct: 505 LINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREM 560



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 19/194 (9%)

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           +N L R+    ++  LL    LP  R   D  +Y  ++++ C+ G   GC  A       
Sbjct: 53  LNRLLRLVPLPESPALLSS--LPSVR---DAVSYNTVLAALCRQG---GCLDA------- 97

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L R+M  +   P  V+Y  L+   C   R  +A+ L  DM   G  P+ VTY + IR
Sbjct: 98  ALFLLRVMAHETR-PTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIR 156

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                 ++DKA+E++R+M     G+ P    Y+ ++   C+AGR         E+   G 
Sbjct: 157 GLCDAADVDKAVELLREM--CESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGI 214

Query: 390 VPREYTYKLVCDAL 403
            P    Y  + D+L
Sbjct: 215 EPDVVMYTGLIDSL 228



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 14/142 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L E+G++ +A   F  M +  C+ DV AY+ +I+  CR+ +   A   L+ M   G
Sbjct: 436 LLAALCEQGMMEQARNFFDEMHK-NCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEG 494

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD  TY++LI+ +   G            +  A  + + M   GFVPDV  ++ LI
Sbjct: 495 L--IPDSVTYSMLINMFANSG-----------DLGAAERVLKQMTASGFVPDVAVFDSLI 541

Query: 295 DGCCKTYRIERALELFDDMNKK 316
            G       E+ LEL  +M  K
Sbjct: 542 KGYGAKGDTEKVLELIREMTAK 563


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 130/277 (46%), Gaps = 16/277 (5%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ W +    + H+  T   M  +  R  N +     L++M R G    V T +   
Sbjct: 50  ALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNR-- 107

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI   G    + EA+  FY+M++  C PD   Y  +++   + G  + A  + ++M+  G
Sbjct: 108 LIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAG 167

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F+  PD +TY+++I    K G           ++ EA  LF  M+ +GF P +V YN +I
Sbjct: 168 FQ--PDTFTYSVIIHCLGKAG-----------KVSEALKLFEEMVERGFAPSLVTYNIII 214

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D   K+     A++L++DM   G  P+RVTY+  +     +  + +A  M  +M+     
Sbjct: 215 DLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAG-W 273

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           VP +  Y  ++    +A     A ++  +++D G  P
Sbjct: 274 VPDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTP 310



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 102/235 (43%), Gaps = 21/235 (8%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + +I  LG+ G V+EAL  F  M +    P +  YN++I+   + GN+  A  L  
Sbjct: 172 TFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYN 231

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M+  GF   PD  TY+I++    + G            + EA  +F  M   G+VPD  
Sbjct: 232 DMQDAGFH--PDRVTYSIMMEVLGQIG-----------HLQEAELMFNEMEQAGWVPDAP 278

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  ++D   K    ERALE +  M   G  PN    NS +  Y  + + D A  ++  M
Sbjct: 279 IYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETM 338

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +     VPT  ++T ++ +   + +  +  + +           E  Y  VC  L
Sbjct: 339 KAWG-LVPTLQTHTILLSSCTASAQHHQVVNLMHR-------SSETVYSFVCTLL 385



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 27/219 (12%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKA-----------RFLLEQMELPGFRCPPDVYT 243
           ++Q   RPD       +N      + N+            +F     E  G++   DV T
Sbjct: 12  LRQLNWRPDTLVALSRVNRTLSAFHINEVLKHQKESGLALKFFDWAKEQEGYK--HDVCT 69

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEA-NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           YT +I                R R +EA + L + M  +G  P VV YN LI    +   
Sbjct: 70  YTTMIGIMG------------RARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANF 117

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +  A+ +F  M ++GC P+RVTY + +  +S     D A++M +KMQ      P + +Y+
Sbjct: 118 LGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQ-PDTFTYS 176

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
            IIH L +AG+V EA     E+V+ G  P   TY ++ D
Sbjct: 177 VIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIID 215



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 20/231 (8%)

Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           ++K   E GL   AL  F +  +Q   + DV  Y  +I  + R  NF     LL++M   
Sbjct: 40  VLKHQKESGL---ALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRRE 96

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C P V TY  LI +Y +              + EA  +F  M  +G  PD V Y  L
Sbjct: 97  G--CEPCVVTYNRLIHAYGRANF-----------LGEAMRIFYQMQEEGCSPDRVTYCTL 143

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +D   K    + A++++  M + G  P+  TY+  I       ++ +A+++  +M  +  
Sbjct: 144 VDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEM--VER 201

Query: 354 G-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           G  P+  +Y  II    ++G  + A     ++ D G  P   TY ++ + L
Sbjct: 202 GFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVL 252



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 1/130 (0%)

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G+  DV  Y  +I    +    E    L  +M ++GC P  VTYN  I  Y   N + +
Sbjct: 61  EGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGE 120

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A+ +  +MQ      P   +Y  ++    +AG    A D   ++   G  P  +TY ++ 
Sbjct: 121 AMRIFYQMQE-EGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVII 179

Query: 401 DALNAAEEPS 410
             L  A + S
Sbjct: 180 HCLGKAGKVS 189


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 111/246 (45%), Gaps = 17/246 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+     +G   EA      M    C PDV  Y  +I+ L   G   +AR + + M  
Sbjct: 287 TSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIE 346

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C PD  TY  +I ++ K G            +  A  +  LM   G  PD  AYN 
Sbjct: 347 KG--CAPDALTYGTIIQNFSKIG-----------NVEAAGEILELMAKSGVGPDCFAYNS 393

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+DG  K  R+++A  ++D M   G  PN VT+N  +       + D+A  + ++M    
Sbjct: 394 LMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKE 453

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA----EE 408
              PT  SYT +I  L +AGRV EA     E++D G +P  +TY  +  +L  A    E 
Sbjct: 454 EVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEA 513

Query: 409 PSLLDD 414
             L++D
Sbjct: 514 KKLVED 519



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 116/256 (45%), Gaps = 24/256 (9%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  S   +I  L     ++EA   F  M    C PDV A+  +I+  C+ G       LL
Sbjct: 6   TIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLL 65

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
            Q  L  FR  PDV+ YT +I  YCK G + TG  +A+  +                  D
Sbjct: 66  NQ-ALKRFR--PDVFLYTSVIHGYCKAGDLDTGYFRAVTPKAS---------------LD 107

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           V++Y  +I G   + RI+ A ELF+++   GC PN V Y + I        I+  ++   
Sbjct: 108 VISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFE 167

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           +M   +  VPT ++YT +I  LC+A  + +A     ++V  G VP   TY  + D  + A
Sbjct: 168 EMSG-SSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKA 226

Query: 407 ----EEPSLLDDGLRK 418
               E   LLD  L K
Sbjct: 227 SKMDEARKLLDVMLTK 242



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 107/233 (45%), Gaps = 14/233 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S T +IK L +   ++EA   F  +K   C P+V AY  VI+ L + G         E+M
Sbjct: 110 SYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEM 169

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G  C P   TYT++I   CK  M           + +A  +F  M+ KG VPD + Y
Sbjct: 170 S--GSSCVPTRTTYTVVIDGLCKAQM-----------LPDACKVFEQMVQKGCVPDTITY 216

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LIDG  K  +++ A +L D M  KG  P  VTY S +  +  ++ I++A E++ +M+ 
Sbjct: 217 TTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRE 276

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                P    +T ++      GR  EA   L E+   G  P    Y  + D L
Sbjct: 277 -RGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLL 328



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 19/254 (7%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +  L +M+ RG    V     T LI +L   G V EA   F  M +  C PD   Y  +I
Sbjct: 303 YQVLTEMTARGCAPDVIL--YTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTII 360

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
               ++GN   A  +LE M   G    PD + Y  L+  Y K             R+ +A
Sbjct: 361 QNFSKIGNVEAAGEILELMAKSGVG--PDCFAYNSLMDGYVKL-----------ERVDQA 407

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM-NKKGCIPNRVTYNSFIR 330
             ++  M+  G  P+ V +N L+ G  K  + +RA  LF +M  K+   P  V+Y   I 
Sbjct: 408 FGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILID 467

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                  + +A    ++M  ++ G+ P   +YT +I++L +AGR+ EA+  + ++V  G 
Sbjct: 468 GLGKAGRVSEAFLQFQEM--IDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGV 525

Query: 390 VPREYTYKLVCDAL 403
            P    Y  +   L
Sbjct: 526 NPDVQAYSALITGL 539



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 34/240 (14%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGE--LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           F++  NV+   + L+ M++ G G       S +   +K+      V++A   + RM    
Sbjct: 363 FSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKL----ERVDQAFGVYDRMVASG 418

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
            +P+   +NV+++ L + G  ++A  L ++M L     PP + +YTILI    K G  + 
Sbjct: 419 IKPNAVTFNVLMHGLFKDGKTDRAFSLFKEM-LEKEEVPPTLVSYTILIDGLGKAGRVSE 477

Query: 260 C----RKAIRR--------------------RIWEANHLFRLMLFKGFVPDVVAYNCLID 295
                ++ I R                    RI EA  L   M+  G  PDV AY+ LI 
Sbjct: 478 AFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALIT 537

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G   +  ++ A ++F +M K+GC PN VTY    R +       +A+++    Q+ + GV
Sbjct: 538 GLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAG---RALDLEAVKQHFSQGV 594



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 33/166 (19%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE---- 337
           G  P +V+YN +I G     +++ A + F+ M   GC P+ + + + I  +    +    
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 338 ---IDKAIEMMR--------------KMQNLNHG-----VPTSS----SYTPIIHALCEA 371
              +++A++  R              K  +L+ G      P +S    SYT +I  L ++
Sbjct: 62  HKLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADS 121

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
            R+ EA +   EL   G  P    Y  V D L  A     ++DGL+
Sbjct: 122 KRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKA---GRIEDGLK 164


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 138/332 (41%), Gaps = 70/332 (21%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
            N ++   +F K+M  + +G      S   L+  L + G + EA A F  M    C PD+
Sbjct: 154 ANRLEQAMEFFKEM--KASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT---CSPDI 208

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFR---------------------------- 236
             YNV+++  C++G   +A+ L++++   G+                             
Sbjct: 209 MTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMK 268

Query: 237 -----CPPDVYTYTILISSYCKYGM------------QTGCRKAI-------------RR 266
                C P+  T+  LI+ +CK GM            + GC+  I             R 
Sbjct: 269 MIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRG 328

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            ++ A  LF  +   G  P +V YN LI G C   R+  A++ FD+M  K C PN +TY+
Sbjct: 329 GVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK-CAPNVITYS 387

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
             I     V  + +A + +  M+   HG  PT  +Y  +I+  C+ G +  A  F  ++ 
Sbjct: 388 ILIDGLCKVRRMKEAAKTLEDMK--AHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMK 445

Query: 386 DGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
             G  P    +  + D L  AE     +DGLR
Sbjct: 446 LAGCAPNTVIFNTLIDGLCKAERA---NDGLR 474



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 28/282 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL----VNEALATFYRMKQ 197
           F     V+     L+DM  R +   V T +   ++K L  E      + +A+  F  MK 
Sbjct: 112 FFMAGRVRDALAHLQDM--RKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKA 169

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
               PD+ +Y+++++AL   G   +A  L   M      C PD+ TY +L+  YCK G  
Sbjct: 170 SGVEPDLESYHILLSALSDSGRMAEAHALFSAM-----TCSPDIMTYNVLMDGYCKIG-- 222

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    + +EA  L + +L  G+ P+V  Y+ +I+  CK  ++E A E+F  M +  
Sbjct: 223 ---------QTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESN 273

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLE 376
           C+PN VT+N+ I  +     ++ AI++  +M+ +     T  +Y  +I +LC+  G V  
Sbjct: 274 CVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKA-TIVTYNTLIDSLCKKRGGVYT 332

Query: 377 ARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDD 414
           A D   +L   G  P   TY  +    CDA   +E     D+
Sbjct: 333 AVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDE 374



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 102/221 (46%), Gaps = 18/221 (8%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
            G G   T  +   LI+   +   ++EA+  F  M+  +C P+V  Y+++I+ LC+V   
Sbjct: 341 EGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEG-KCAPNVITYSILIDGLCKVRRM 399

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            +A   LE M+  G+   P V TY  LI+ +CK G            +  A   F  M  
Sbjct: 400 KEAAKTLEDMKAHGY--TPTVVTYGGLINGFCKCG-----------ELKSALLFFEKMKL 446

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  P+ V +N LIDG CK  R    L L   M+ +GC P+ +TYN  I      N ++ 
Sbjct: 447 AGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVED 506

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           A  +   M       P  +++  +I  LC   +V EAR+ L
Sbjct: 507 AQRLFDGMAC----APNVTTFNFLIRGLCAQKKVEEARNIL 543



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 109/246 (44%), Gaps = 19/246 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-GNFNKARFLLEQMELP 233
           LI    + G++ +A+  F  M++  C+  +  YN +I++LC+  G    A  L  ++E  
Sbjct: 284 LIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGA 343

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P + TY  LI  +C             RR+ EA   F  M  K   P+V+ Y+ L
Sbjct: 344 GL--TPTIVTYNSLIQGFCD-----------ARRLSEAMQYFDEMEGK-CAPNVITYSIL 389

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           IDG CK  R++ A +  +DM   G  P  VTY   I  +    E+  A+    KM+ L  
Sbjct: 390 IDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMK-LAG 448

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPS 410
             P +  +  +I  LC+A R  +    L  +   G  P   TY  +   L   N  E+  
Sbjct: 449 CAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQ 508

Query: 411 LLDDGL 416
            L DG+
Sbjct: 509 RLFDGM 514



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           R+  +A  LF+ +L   F P+   YN LI G CK  ++ +A+ +F DM   G +PN  T 
Sbjct: 11  RKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTM 70

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           N+ +     + ++  A+++ R+MQ     +PTS+S+  ++     AGRV +A   L ++ 
Sbjct: 71  NTLLLGLCEIGQMSSALKLFREMQA-GPFLPTSASHNILLRGFFMAGRVRDALAHLQDMR 129

Query: 386 DGGSVPREYTYKLVCDAL 403
              S     TY LV   L
Sbjct: 130 KSSSSVATGTYNLVLKGL 147



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 34/242 (14%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++AL  F  +      P+ + YNV+I   C+ G  ++A  +   M+  G    P+  T  
Sbjct: 14  DQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLL--PNASTMN 71

Query: 246 ILISSYCKYGMQTGCRKAIRRRIW------EANH--LFRLMLFKGFVPDVVA-------- 289
            L+   C+ G  +   K  R           A+H  L R     G V D +A        
Sbjct: 72  TLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKS 131

Query: 290 --------YNCLIDGCC----KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
                   YN ++ G C       R+E+A+E F +M   G  P+  +Y+  +   S    
Sbjct: 132 SSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGR 191

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           + +A  +   M       P   +Y  ++   C+ G+  EA+  + E++  G  P  +TY 
Sbjct: 192 MAEAHALFSAMTC----SPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYS 247

Query: 398 LV 399
           ++
Sbjct: 248 II 249



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 66/157 (42%), Gaps = 18/157 (11%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           L+DM   G    V T     LI    + G +  AL  F +MK   C P+   +N +I+ L
Sbjct: 406 LEDMKAHGYTPTVVTYGG--LINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGL 463

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           C+    N    LL  M   G  C PDV TY  LIS  C              R+ +A  L
Sbjct: 464 CKAERANDGLRLLCHMHAEG--CKPDVITYNCLISGLCS-----------ANRVEDAQRL 510

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           F  M      P+V  +N LI G C   ++E A  + D
Sbjct: 511 FDGM---ACAPNVTTFNFLIRGLCAQKKVEEARNILD 544



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 1/109 (0%)

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L+ G     + ++AL LF ++      PN  TYN  IR +    ++ +A+ +   M++
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +  +P +S+   ++  LCE G++  A     E+  G  +P   ++ ++
Sbjct: 61  -SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNIL 108


>gi|356534319|ref|XP_003535704.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Glycine max]
          Length = 507

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 150/330 (45%), Gaps = 25/330 (7%)

Query: 81  RILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNK-------ATEFYHWVERFFDFFHNEM 133
           RIL     +  +  L   PA    P+ V   LNK       A  F+ W E+  +F H   
Sbjct: 63  RILSTTPASTVDACLAAVPAK-PSPELVLEVLNKLSNAGVLALSFFRWAEKQSEFKHTTE 121

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
               +     +    K +W  + DM +R   +L+T+ + + + +         EA+ TF 
Sbjct: 122 AFHALIEALGKIRQFKMIWTLVNDMKQR---KLLTSDTFSLVARRYARARKAKEAIKTFE 178

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M+ +  +P V  +N +++ LC+  +  +A  + ++M     R  PD+ +YTIL+  + +
Sbjct: 179 KMEHYGLKPHVSDFNKLVDVLCKSKSVEEAHEVFDKMR--KLRLDPDIKSYTILLEGWSQ 236

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                      ++ + + N + R M  KGF  DVVAY  +++  CK  + + A+ L+ +M
Sbjct: 237 -----------QQNLIKVNEVCREMEDKGFQLDVVAYGIIMNAHCKAKKFDEAIGLYHEM 285

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
             +G  P+   Y + I        +D+A+E   ++   +  VP + +Y  ++ A C + R
Sbjct: 286 KARGVRPSPHVYCTLINGLGSDKRLDEALEFF-EVSKASGFVPEAPTYNAVVGAYCWSLR 344

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + +A   + E+   G  P   T+ +V   L
Sbjct: 345 MDDAYRMVGEMKKCGIGPNSRTFDIVLHHL 374



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 4/148 (2%)

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA   F  M   G  P V  +N L+D  CK+  +E A E+FD M K    P+  +Y   +
Sbjct: 172 EAIKTFEKMEHYGLKPHVSDFNKLVDVLCKSKSVEEAHEVFDKMRKLRLDPDIKSYTILL 231

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
             +S    + K  E+ R+M++    +    +Y  I++A C+A +  EA     E+   G 
Sbjct: 232 EGWSQQQNLIKVNEVCREMEDKGFQLDV-VAYGIIMNAHCKAKKFDEAIGLYHEMKARGV 290

Query: 390 VPREYTYKLVCDALNAAEEPSLLDDGLR 417
            P  + Y   C  +N       LD+ L 
Sbjct: 291 RPSPHVY---CTLINGLGSDKRLDEALE 315



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A      MK+    P+   +++V++ L +     +A  +  +M    F C P V TY
Sbjct: 345 MDDAYRMVGEMKKCGIGPNSRTFDIVLHHLIKGRRIEEASSVFRRMNGGEFGCEPSVSTY 404

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            I++  +C   +       +   +W+       M  KG +P +  ++ L+   C   +++
Sbjct: 405 EIMVRMFCNEELLD-----MAVAVWDE------MKGKGILPGMHMFSTLVCALCHESKLD 453

Query: 305 RALELFDDMNKKGCIP 320
            A + F +M   G  P
Sbjct: 454 EACKYFQEMLDVGIRP 469


>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 481

 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK------- 262
           +I  L R    N AR +L  M   G     D++   ++I SY K G+     K       
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKEGIVQESVKMFQKMEE 108

Query: 263 -AIRRRIWEANHLFRL----------------MLFKGFVPDVVAYNCLIDGCCKTYRIER 305
             + R I   N LF++                ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 91/221 (41%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G            +  A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLISSHCKSG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGXLIENFCKXGQYDKAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L   G
Sbjct: 362 QSTL-HLEP--SAYNPMIEYLCNNGQXXKAETLVRQLXKLG 399


>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Cucumis sativus]
          Length = 830

 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 118/246 (47%), Gaps = 22/246 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA+  +Y+M +    P V  +N +IN  CR G+  +AR +LE + L G    P V TY
Sbjct: 532 IAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGL--VPSVVTY 589

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T L+++YC+ G            + E  H    M     VP  V Y  LI G C+  ++ 
Sbjct: 590 TTLMNAYCEVG-----------NMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMH 638

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            +L+L + M  KG +P+ VTYN+ I+ +    EI KA+++   M  L++  PT  +Y  +
Sbjct: 639 ESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMML-LHNCDPTQVTYKVL 697

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS--------LLDDGL 416
           I+ALC  G + +    +  + D     ++ TY  +  A  A  + S        +L  G 
Sbjct: 698 INALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGF 757

Query: 417 RKRIRD 422
              IRD
Sbjct: 758 VISIRD 763



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 18/232 (7%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           ++CL KV    G + EAL  F  M+  R  PD   Y+++I+ LC+ G   +A  L EQM 
Sbjct: 418 LSCLCKV----GRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMR 473

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
           L   R  P  +    ++    K G            I EA + F        + DVV YN
Sbjct: 474 LK--RKFPHHFAQRAVLLGLFKNG-----------NISEARNYFDTWTRMDLMEDVVLYN 520

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +IDG  +   I  A++L+  M ++G  P+ VT+N+ I  +    ++ +A +M+  ++ L
Sbjct: 521 IMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIR-L 579

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              VP+  +YT +++A CE G + E   FL E+     VP   TY ++   L
Sbjct: 580 KGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGL 631



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 124/276 (44%), Gaps = 21/276 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            FL D ++     +V   S+  ++    + GL++ A + F  M +     D ++YN++++
Sbjct: 258 SFLHDSNKVVGPSIV---SINTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNILLH 314

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC  G+ ++A    + ME  G    PDV TY  L   +   G+ +G RK +++      
Sbjct: 315 GLCVAGSMDEALGFTDDMEKHGVE--PDVVTYNTLAKGFLLLGLMSGARKVVQK------ 366

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
                ML +G  PD+V Y  LI G C+   IE AL+L  +   +G   N + YN  +   
Sbjct: 367 -----MLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCL 421

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             V  I++A+ +  +M+ L    P    Y+ +IH LC+ G V  A     ++      P 
Sbjct: 422 CKVGRIEEALTLFDEMETLRLE-PDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPH 480

Query: 393 EYTYKLVCDAL----NAAEEPSLLDDGLRKRIRDGI 424
            +  + V   L    N +E  +  D   R  + + +
Sbjct: 481 HFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDV 516



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 21/184 (11%)

Query: 208 NVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           +++I+ LC       A  FL +  ++ G    P + +   ++S +CK G+          
Sbjct: 241 SILIHGLCEQSKLEDAISFLHDSNKVVG----PSIVSINTIMSKFCKVGL---------- 286

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            I  A   F LM+  G + D  +YN L+ G C    ++ AL   DDM K G  P+ VTYN
Sbjct: 287 -IDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYN 345

Query: 327 SFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           +  + + ++  +  A ++++KM  Q LN   P   +YT +I   C+ G + EA     E 
Sbjct: 346 TLAKGFLLLGLMSGARKVVQKMLLQGLN---PDLVTYTTLICGHCQMGNIEEALKLRQET 402

Query: 385 VDGG 388
           +  G
Sbjct: 403 LSRG 406



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 81/202 (40%), Gaps = 34/202 (16%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           N++ ++ FL +M    N  + T  + T LIK L  +  ++E+L     M      PD   
Sbjct: 601 NMQEMFHFLHEM--EANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVT 658

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----------- 255
           YN +I   C+     KA  L   M L    C P   TY +LI++ C +G           
Sbjct: 659 YNTIIQCFCKGKEITKALQLYNMMLLH--NCDPTQVTYKVLINALCIFGDLKDVDRMVVS 716

Query: 256 ----------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
                           ++  C K    ++ +A   F  ML KGFV  +  Y+ +I+  CK
Sbjct: 717 IEDRNITLKKVTYMTIIKAHCAKG---QVSKALGYFNQMLAKGFVISIRDYSAVINRLCK 773

Query: 300 TYRIERALELFDDMNKKGCIPN 321
              I  A   F  M  +G  P+
Sbjct: 774 RGLITEAKYFFVMMLSEGVTPD 795


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 112/222 (50%), Gaps = 16/222 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + EA+  F +M     +PD+Y +N++++ LC+ G   KAR +L  M        PDV 
Sbjct: 168 GRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQS--VDPDVI 225

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY  L+  Y            + ++  +A  +F  M  +G  PDV +Y+ +I+G CKT  
Sbjct: 226 TYNSLMDGY-----------FLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKM 274

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SY 361
           ++ A+ L  +M+ K   PN VTY+S I        I  A +++ +M   N G P    +Y
Sbjct: 275 VDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMH--NRGQPADVITY 332

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             ++ ALC+  +V +A   L ++ D G  P  YTY ++ D L
Sbjct: 333 NSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGL 374



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 109/237 (45%), Gaps = 16/237 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   LI  L + G    A+     +     +P+V  Y+ +I +LC+      A  L  QM
Sbjct: 86  SYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQM 145

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            L   R  PDV TY  L+          GC   I  R+ EA  LF  ML K   PD+  +
Sbjct: 146 LLK--RISPDVITYNTLMY---------GC--LIVGRLKEAVGLFNQMLLKNIKPDIYTF 192

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L+DG CK   +++A  +   M K+   P+ +TYNS +  Y +V + +KA  +   M  
Sbjct: 193 NILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMA- 251

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
              GV P   SY+ +I+ LC+   V EA + L E+      P   TY  + D L+ +
Sbjct: 252 -RRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKS 307



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 29/196 (14%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + LK+M  +       T + + LI  L + G + +A      M       DV  YN +++
Sbjct: 280 NLLKEMHSKSMAP--NTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLD 337

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           ALC+    +KA  LL +++  G +  PD+YTYTIL+   CK G           R+ +A 
Sbjct: 338 ALCKNHQVDKAITLLTKIKDQGIQ--PDIYTYTILVDGLCKNG-----------RLKDAQ 384

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +++++L KG+  D +               ++AL L   M   GC PN VT+   IR  
Sbjct: 385 EVYQILLIKGYHLDSL--------------FDKALSLLSKMEDNGCTPNPVTFEILIRAL 430

Query: 333 SVVNEIDKAIEMMRKM 348
              +  DKA+E++R+M
Sbjct: 431 FENDMNDKAVELLREM 446



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 96/204 (47%), Gaps = 12/204 (5%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P ++ +  +  +L ++ +F+    L  QMEL G +   D+    IL++ +C  G     +
Sbjct: 6   PTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQ--TDLVNLNILVNCFCHLG-----Q 58

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             +  ++ E  H    ++ KGF  + V+Y  LIDG CK      A+++  +++     PN
Sbjct: 59  VCLNDKVKETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPN 118

Query: 322 RVTYNSFIRYYSVVNE--IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
            V Y++ I  YS+  +  +  A ++  +M  L    P   +Y  +++     GR+ EA  
Sbjct: 119 VVMYSTII--YSLCKDKLVIDAFDLYSQML-LKRISPDVITYNTLMYGCLIVGRLKEAVG 175

Query: 380 FLAELVDGGSVPREYTYKLVCDAL 403
              +++     P  YT+ ++ D L
Sbjct: 176 LFNQMLLKNIKPDIYTFNILVDGL 199


>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 118/246 (47%), Gaps = 22/246 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA+  +Y+M +    P V  +N +IN  CR G+  +AR +LE + L G    P V TY
Sbjct: 532 IAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGL--VPSVVTY 589

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T L+++YC+ G            + E  H    M     VP  V Y  LI G C+  ++ 
Sbjct: 590 TTLMNAYCEVG-----------NMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMH 638

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            +L+L + M  KG +P+ VTYN+ I+ +    EI KA+++   M  L++  PT  +Y  +
Sbjct: 639 ESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMML-LHNCDPTQVTYKVL 697

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS--------LLDDGL 416
           I+ALC  G + +    +  + D     ++ TY  +  A  A  + S        +L  G 
Sbjct: 698 INALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGF 757

Query: 417 RKRIRD 422
              IRD
Sbjct: 758 VISIRD 763



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 18/232 (7%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           ++CL KV    G + EAL  F  M+  R  PD   Y+++I+ LC+ G   +A  L EQM 
Sbjct: 418 LSCLCKV----GRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMR 473

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
           L   R  P  +    ++    K G            I EA + F        + DVV YN
Sbjct: 474 LK--RKFPHHFAQRAVLLGLFKNG-----------NISEARNYFDTWTRMDLMEDVVLYN 520

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +IDG  +   I  A++L+  M ++G  P+ VT+N+ I  +    ++ +A +M+  ++ L
Sbjct: 521 IMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIR-L 579

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              VP+  +YT +++A CE G + E   FL E+     VP   TY ++   L
Sbjct: 580 KGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGL 631



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 124/276 (44%), Gaps = 21/276 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            FL D ++     +V   S+  ++    + GL++ A + F  M +     D ++YN++++
Sbjct: 258 SFLHDSNKVVGPSIV---SINTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLH 314

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC  G+ ++A    + ME  G    PDV TY  L   +   G+ +G RK +++      
Sbjct: 315 GLCVAGSMDEALGFTDDMEKHGVE--PDVVTYNTLAKGFLLLGLMSGARKVVQK------ 366

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
                ML +G  PD+V Y  LI G C+   IE AL+L  +   +G   N + YN  +   
Sbjct: 367 -----MLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCL 421

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             V  I++A+ +  +M+ L    P    Y+ +IH LC+ G V  A     ++      P 
Sbjct: 422 CKVGRIEEALTLFDEMETLRLE-PDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPH 480

Query: 393 EYTYKLVCDAL----NAAEEPSLLDDGLRKRIRDGI 424
            +  + V   L    N +E  +  D   R  + + +
Sbjct: 481 HFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDV 516



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 21/184 (11%)

Query: 208 NVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           +++I+ LC       A  FL +  ++ G    P + +   ++S +CK G+          
Sbjct: 241 SILIHGLCEQSKLEDAISFLHDSNKVVG----PSIVSINTIMSKFCKVGL---------- 286

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            I  A   F LM+  G + D  +YN L+ G C    ++ AL   DDM K G  P+ VTYN
Sbjct: 287 -IDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYN 345

Query: 327 SFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           +  + + ++  +  A ++++KM  Q LN   P   +YT +I   C+ G + EA     E 
Sbjct: 346 TLAKGFLLLGLMSGARKVVQKMLLQGLN---PDLVTYTTLICGHCQMGNIEEALKLRQET 402

Query: 385 VDGG 388
           +  G
Sbjct: 403 LSRG 406



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 81/202 (40%), Gaps = 34/202 (16%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           N++ ++ FL +M    N  + T  + T LIK L  +  ++E+L     M      PD   
Sbjct: 601 NMQEMFHFLHEM--EANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVT 658

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----------- 255
           YN +I   C+     KA  L   M L    C P   TY +LI++ C +G           
Sbjct: 659 YNTIIQCFCKGKEITKALQLYNMMLLH--NCDPTQVTYKVLINALCIFGDLKDVDRMVVS 716

Query: 256 ----------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
                           ++  C K    ++ +A   F  ML KGFV  +  Y+ +I+  CK
Sbjct: 717 IEDRNITLKKXTYMTIIKAHCAKG---QVSKALGYFNQMLAKGFVISIRDYSAVINRLCK 773

Query: 300 TYRIERALELFDDMNKKGCIPN 321
              I  A   F  M  +G  P+
Sbjct: 774 RGLITEAKYFFVMMLSEGVTPD 795


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M     +PDVY Y+V+IN LC+    + A  L ++M + G    P+  
Sbjct: 172 GDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--VPNGV 229

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 230 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 278

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A  L D+M+ KG  P+++TY + I       ++D A E  ++M   N  +    +YT
Sbjct: 279 LKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLD-EVAYT 337

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I   C+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 338 ALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRD 397

Query: 423 G 423
           G
Sbjct: 398 G 398



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 109/220 (49%), Gaps = 21/220 (9%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 123 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRXG-------- 172

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +PN V
Sbjct: 173 ---DLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGV 229

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A   +
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAHHLI 286

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
            E+   G  P + TY  +   +N   +   LD     R R
Sbjct: 287 DEMSVKGLKPDKITYTTL---INGCCKEGDLDSAFEHRKR 323



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 14/197 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 289

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G +  PD  TYT LI+  CK G      +  +R I E   L           D VAY
Sbjct: 290 SVKGLK--PDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRL-----------DEVAY 336

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  R   A ++  +M   G  P+  TY   I  +    ++    +++++MQ 
Sbjct: 337 TALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQR 396

Query: 351 LNHGVPTSSSYTPIIHA 367
             H VP+  +Y  +++ 
Sbjct: 397 DGH-VPSVVTYNVLMNG 412



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 30/239 (12%)

Query: 191 TFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           ++  M  F C   +   A +++   + R G  + +      +E  G +   D+Y ++ LI
Sbjct: 2   SYCTMIHFLCTHQMLLEAKSLIQVVVSRKGKGSASAVFAAILETKGTQ-RSDIYVFSGLI 60

Query: 249 SSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GFVPDVVA---- 289
           ++Y + G       C +  R  + W           HL +L  FK   GF  +++     
Sbjct: 61  AAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYP 120

Query: 290 -----YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
                +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y    ++D+   +
Sbjct: 121 ASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXL 180

Query: 345 MRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
              M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G VP   T+  + D 
Sbjct: 181 KSXM--LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 237


>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 576

 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 136/291 (46%), Gaps = 22/291 (7%)

Query: 122 VERFFDFFHNEMTCKEMGIVFARGNNV--KGLWD----FLKDMSRRGNGELVTTSSVTCL 175
           V+R F+F  N  T   + +       +  +G W+     + DM  +G    + T SV  L
Sbjct: 267 VDRAFEFVSNLNTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKGCEPNIVTYSV--L 324

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           I  L  +G   EA+     MK+    PD Y Y+ +I+A C+ G  + A   ++ M   G+
Sbjct: 325 ISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMISAGW 384

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
              PD+  Y  ++ S CK G           R  EA ++F+ +   G  P+  +YN +  
Sbjct: 385 L--PDIVNYNTIMGSLCKKG-----------RADEALNIFKKLEEVGCPPNASSYNTMFG 431

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
               +    RAL +  +M   G  P+R+TYNS I        +D+AI ++  M+      
Sbjct: 432 ALWSSGDKIRALTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGLLVDMER-TEWQ 490

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           PT  SY  ++  LC+A R+++A + LA +VD G  P E TY L+ + +  A
Sbjct: 491 PTVISYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLVEGVGYA 541



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 117/268 (43%), Gaps = 46/268 (17%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA---- 223
           T  + T LI+     G +++A+     M     +PD+Y YNV++  +C+ G  ++A    
Sbjct: 215 TVITYTILIEATIIHGSIDDAMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDRAFEFV 274

Query: 224 ----------------------------RFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
                                         L+  M + G  C P++ TY++LISS C+ G
Sbjct: 275 SNLNTTPSLNLYNLLLKGLLNEGRWEAGERLMSDMIVKG--CEPNIVTYSVLISSLCRDG 332

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                      +  EA  + R+M  KG  PD   Y+ LI   CK  +++ A+   DDM  
Sbjct: 333 -----------KAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIGFVDDMIS 381

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
            G +P+ V YN+ +         D+A+ + +K++ +    P +SSY  +  AL  +G  +
Sbjct: 382 AGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCP-PNASSYNTMFGALWSSGDKI 440

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
            A   + E++  G  P   TY  +  +L
Sbjct: 441 RALTMILEMLSNGVDPDRITYNSLISSL 468



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 23/218 (10%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  +  A G        F+ DM     G L    +   ++  L ++G  +EAL  F +
Sbjct: 364 CKEGKVDLAIG--------FVDDMI--SAGWLPDIVNYNTIMGSLCKKGRADEALNIFKK 413

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           +++  C P+  +YN +  AL   G+  K R L   +E+      PD  TY  LISS C+ 
Sbjct: 414 LEEVGCPPNASSYNTMFGALWSSGD--KIRALTMILEMLSNGVDPDRITYNSLISSLCRD 471

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           GM           + EA  L   M    + P V++YN ++ G CK +RI  A+E+   M 
Sbjct: 472 GM-----------VDEAIGLLVDMERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMV 520

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
             GC PN  TY   +           A+E+ + + ++N
Sbjct: 521 DNGCQPNETTYTLLVEGVGYAGWRSYAVELAKSLVSMN 558



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 17/207 (8%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L + G   EAL    +M +   +PDV     +I  L       KA  ++E +E  G    
Sbjct: 87  LCKTGKYTEALYFLEQMVKRGYKPDVILCTKLIKGLFTSKRTEKAVRVMEILEQYG---D 143

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD + Y  +IS +C+             R   AN +   M ++GF PDVV YN LI   C
Sbjct: 144 PDSFAYNAVISGFCR-----------SDRFDAANRVILRMKYRGFSPDVVTYNILIGSLC 192

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PT 357
              +++ AL++ D + +  C P  +TY   I    +   ID A+ ++ +M  ++ G+ P 
Sbjct: 193 ARGKLDLALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEM--MSRGLQPD 250

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAEL 384
             +Y  I+  +C+ G V  A +F++ L
Sbjct: 251 MYTYNVIVRGMCKRGLVDRAFEFVSNL 277


>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 484

 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 175 L-IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L I   G+EG+V E++  F +M++      + +Y+ +   + R G F  A+    +M   
Sbjct: 85  LMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRFMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  + + ++I  +   G           ++  AN  F  M  +   PDV+ YN +
Sbjct: 145 GIE--PTRHXFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVITYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  +++ A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+   +
Sbjct: 192 INGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMK--GY 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E+VD    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYMAPTD 290



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 31/237 (13%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--LMIDSYGKEGIVQESVKLFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYDALFKVILRRGRFMMAKRYFNKMLSEGIEPTRHXFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ +TYN+ I  Y  V ++D+A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRK 418
                  +V +A   + E+   G  P   TY      +C+A   +E  S+L + + K
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDK 284



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 25/214 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA   F  MK     P V  Y  +I     V   + A  L+E+M+  G+   P+  TY
Sbjct: 201 MDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMK--GYGIKPNAITY 258

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRI 303
           + L+   C              ++ EA  + + M+ K   P D   +  LI   CKT  +
Sbjct: 259 STLLPGLCN-----------AEKMSEARSILKEMVDKYMAPTDNSIFXRLISSQCKTGNL 307

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM---------QNLNHG 354
           + A ++   M +         Y   I  +    + DKA++++ K+         Q+  H 
Sbjct: 308 DAAADVLKAMIRLSVPTEAGHYGVLIENFCKAGQHDKAVKLLDKLIEKDIILRPQSTLHM 367

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            P  S+Y P+I  LC  G+  +A   + +L+  G
Sbjct: 368 EP--SAYNPMIEYLCNNGQTAKAEALVRQLLKLG 399


>gi|297789717|ref|XP_002862796.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297308523|gb|EFH39054.1| hypothetical protein ARALYDRAFT_359368 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 378

 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 133/308 (43%), Gaps = 23/308 (7%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           +N+A E++ W ER  +  H   +   + +V AR  N   L   L +MS  G G  V    
Sbjct: 92  VNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVN--- 148

Query: 172 VTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
            TC+  VL   +   + E       M++F+ RP   AY  +I A   V + +    L +Q
Sbjct: 149 -TCIEMVLSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLALFQQ 207

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M+  G+   P V+ +T LI  + K G           R+  A  L   M       D+V 
Sbjct: 208 MQELGYE--PTVHLFTTLIRGFAKEG-----------RVDSALSLLDEMKSSSLDADIVL 254

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN  ID   K  +++ A + F ++   G  P+ VTY S I      N +D+A+EM   ++
Sbjct: 255 YNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLE 314

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
             N  VP + +Y  +I     AG+  EA   L      GS+P    Y  +   L    + 
Sbjct: 315 K-NRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCI---LTCLRKM 370

Query: 410 SLLDDGLR 417
             +D+ LR
Sbjct: 371 GKVDEALR 378



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 40/256 (15%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE-ALATF 192
            CK +  +   G N +  + F       GN ++V      C +   G  G   E AL+  
Sbjct: 23  VCKHLSSLSDNGENHEKPYTF------EGNRQIVND---ICNVLETGAWGSSAENALSAL 73

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKA----RFLLEQMELPGFRCPPDVYTYTILI 248
           +    F+ +P+      VI  L R+ + N+A    R+   + ELP   CP + Y   +L+
Sbjct: 74  F----FKPQPEF-----VIGVLRRLKDVNRAIEYFRWYERRTELP--HCP-ESYNSLLLV 121

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
            + C             R     + +   M   GF P V     ++  C K  ++    +
Sbjct: 122 MARC-------------RNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFD 168

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
           +  +M K    P    Y + I  +S VN  D  + + ++MQ L +  PT   +T +I   
Sbjct: 169 VVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLALFQQMQELGYE-PTVHLFTTLIRGF 227

Query: 369 CEAGRVLEARDFLAEL 384
            + GRV  A   L E+
Sbjct: 228 AKEGRVDSALSLLDEM 243


>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 418

 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M  KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E+++ G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 104/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +     R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWSLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  +++ A  LFD+M  KG +P
Sbjct: 186 ------DLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E++  G  P + TY  + D 
Sbjct: 297 DLIDEMIMKGLXPDKITYTTLIDG 320



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG   TT     LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANVLFDEMLDKGLVPNGVTFTT-----LIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G    PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLX--PDKITYTTLIDGNCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 128/261 (49%), Gaps = 18/261 (6%)

Query: 110 LGLNKATEFYHWVERFFDFFHNE-MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVT 168
           + L+++  F++W     D+ H       EM  +  +       W  + D+ +  N E ++
Sbjct: 128 IPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLI-DLMKSRNVE-IS 185

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
             + T LI+     GL +EA+  F RM+ + C PD  A+++VI+ L R    ++A+   +
Sbjct: 186 IETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFD 245

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            ++    R  PDV  YT L+  +C+ G            I EA  +F+ M   G  P+V 
Sbjct: 246 SLK---DRFEPDVIVYTNLVRGWCRAG-----------EISEAEKVFKEMKLAGIEPNVY 291

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y+ +ID  C+  +I RA ++F DM   GC PN +T+N+ +R +      +K +++  +M
Sbjct: 292 TYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQM 351

Query: 349 QNLNHGVPTSSSYTPIIHALC 369
           + L    P + +Y  +I A C
Sbjct: 352 KKLG-CEPDTITYNFLIEAHC 371



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 118/306 (38%), Gaps = 63/306 (20%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R +  +  +D LKD   R   +++     T L++     G ++EA   F  MK     P+
Sbjct: 236 RASEAQSFFDSLKD---RFEPDVIV---YTNLVRGWCRAGEISEAEKVFKEMKLAGIEPN 289

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQM--------------------------------- 230
           VY Y++VI+ALCR G  ++A  +   M                                 
Sbjct: 290 VYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYN 349

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI------------------------RR 266
           ++    C PD  TY  LI ++C+        K +                        +R
Sbjct: 350 QMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKR 409

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            +  A+ ++  M+     P+ V YN L+     +   +  L++  +M+ K   PN  TY 
Sbjct: 410 DVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYR 469

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             +  +  +   + A ++ ++M       P+ S Y  ++  L  AG++ +  + + +++ 
Sbjct: 470 LLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQ 529

Query: 387 GGSVPR 392
            G V R
Sbjct: 530 KGLVAR 535



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 97/243 (39%), Gaps = 57/243 (23%)

Query: 167 VTTSSVTCLIKVLGE--EGL-VNEALATFYRMKQFRCRPD---VYAYNVVINALCRVGNF 220
           V+ S V C+I+  G    G+ ++++LA F+     R   D    + YN +I+   +V  F
Sbjct: 109 VSPSVVRCVIEKCGSVRHGIPLHQSLA-FFNWATSRDDYDHKSPHPYNEMIDLSGKVRQF 167

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           + A  L++ M+         + T+TILI  Y + G+ +           EA H F  M  
Sbjct: 168 DLAWHLIDLMKSRNVEI--SIETFTILIRRYVRAGLAS-----------EAVHCFNRMED 214

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G VPD +A++ +I    +  R   A   FD + K    P+ + Y + +R +        
Sbjct: 215 YGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGW-------- 265

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
                                       C AG + EA     E+   G  P  YTY +V 
Sbjct: 266 ----------------------------CRAGEISEAEKVFKEMKLAGIEPNVYTYSIVI 297

Query: 401 DAL 403
           DAL
Sbjct: 298 DAL 300


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 127/289 (43%), Gaps = 64/289 (22%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           + ++V+ L++ L + G V EAL    R+ +F   P+++ YN +I++LC+  NF++A  L 
Sbjct: 331 SEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLF 390

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAIR---------- 265
           ++M   G  CP DV TY+ILI  +C+ G            +  G + ++           
Sbjct: 391 DRMGKIGL-CPNDV-TYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHC 448

Query: 266 --RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP--- 320
               I  A  L   M+ K   P VV Y  L+ G C   +I +AL L+ +M  KG +P   
Sbjct: 449 KFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIY 508

Query: 321 --------------------------------NRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
                                           NRVTYN  I  Y     + KA E + +M
Sbjct: 509 TFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEM 568

Query: 349 QNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             +  G VP + SY P+IH LC  G+  EA+ F+  L  G     E  Y
Sbjct: 569 --IEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICY 615



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 120/271 (44%), Gaps = 35/271 (12%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G + +  + T L+  L   GL+ +A+  F  M ++  +P+   YNV+I   C  GN +
Sbjct: 500 GKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMS 559

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ----------------------TG 259
           KA   L +M   G    PD Y+Y  LI   C  G                        TG
Sbjct: 560 KAFEFLNEMIEKGI--VPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTG 617

Query: 260 -----CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                CR+    ++ EA  + + M  +G   D+V Y  LIDG  K    +  L L  +M+
Sbjct: 618 LLHGFCREG---KLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMH 674

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGR 373
            +G  P+ V Y S I   S   +  +A  +   M  +N G VP   +YT +I+ LC+AG 
Sbjct: 675 DRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLM--INEGCVPNEVTYTAVINGLCKAGF 732

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           V EA    +++  G SVP + TY    D L 
Sbjct: 733 VNEAEILCSKMRPGNSVPNQVTYGCFLDILT 763



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 16/215 (7%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A+  F  M     RPDVY Y  VI +LC + + ++A+ ++ QME  G  C  ++  Y +L
Sbjct: 211 AMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATG--CDVNIVPYNVL 268

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I   CK           ++++WEA  + + +  K   PDVV Y  L+ G CK    E  L
Sbjct: 269 IDGLCK-----------KQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGL 317

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
           E+ D+M +    P+    +S +       ++++A+ +++++     GV P    Y  +I 
Sbjct: 318 EMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEF--GVSPNIFVYNALID 375

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           +LC+     EA      +   G  P + TY ++ D
Sbjct: 376 SLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILID 410



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 31/250 (12%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I+ L E   ++ A     +M+   C  ++  YNV+I+ LC+     +A  +  + +L
Sbjct: 231 TGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGI--KKDL 288

Query: 233 PGFRCPPDVYTYTILISSYCKY--------------------------GMQTGCRKAIRR 266
            G    PDV TY  L+   CK                            +  G RK  R 
Sbjct: 289 AGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRK--RG 346

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++ EA +L + +   G  P++  YN LID  CK    + A  LFD M K G  PN VTY+
Sbjct: 347 KVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYS 406

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             I  +    ++D A+  + +M ++    P+   Y  +I+  C+ G +  A   +AE+++
Sbjct: 407 ILIDMFCRRGKLDTALSFLGEMIDMGLK-PSVYPYNSLINGHCKFGDISAAESLMAEMIN 465

Query: 387 GGSVPREYTY 396
               P   TY
Sbjct: 466 KKLEPTVVTY 475



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 101/245 (41%), Gaps = 54/245 (22%)

Query: 154 FLKDMSRRG--NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
            LK+M  RG    +++ TS    +I    + G   EA   +  M    C P+   Y  VI
Sbjct: 669 LLKEMHDRGLKPDDVIYTS----MIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVI 724

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVY----------------------------- 242
           N LC+ G  N+A  L  +M  PG   P  V                              
Sbjct: 725 NGLCKAGFVNEAEILCSKMR-PGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGL 783

Query: 243 -----TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                TY +LI  +C+ G           R+ EA+ L   M+  G  PD + Y  +I   
Sbjct: 784 LANTATYNMLIRGFCRQG-----------RMEEASELITRMIGDGVSPDCITYTTMISEL 832

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGV 355
           C+   +++A+EL++ M +KG  P+RV YN+ I    V  E+ KA E+  +M  Q L    
Sbjct: 833 CRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNT 892

Query: 356 PTSSS 360
            TS +
Sbjct: 893 ETSET 897



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 17/227 (7%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M +    P+V   + +++ L +  +F  A  L + M   G R  PDVY YT +I S C+ 
Sbjct: 183 MTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIR--PDVYIYTGVIRSLCEL 240

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                      + +  A  +   M   G   ++V YN LIDG CK  ++  A+ +  D+ 
Sbjct: 241 -----------KDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLA 289

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
            K   P+ VTY + +     V E +  +EM+ +M  L    P+ ++ + ++  L + G+V
Sbjct: 290 GKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFS-PSEAAVSSLVEGLRKRGKV 348

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDALNAA---EEPSLLDDGLRK 418
            EA + +  + + G  P  + Y  + D+L      +E  LL D + K
Sbjct: 349 EEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGK 395



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 109/248 (43%), Gaps = 17/248 (6%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           D   +GN EL      T L+     EG + EAL+    M       D+  Y V+I+   +
Sbjct: 601 DGLHKGNCEL-NEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLK 659

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
             +      LL++M   G +  PD   YT +I +  K G              EA  ++ 
Sbjct: 660 HKDRKVFLGLLKEMHDRGLK--PDDVIYTSMIDAKSKTG-----------DFKEAFGIWD 706

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV-V 335
           LM+ +G VP+ V Y  +I+G CK   +  A  L   M     +PN+VTY  F+   +  V
Sbjct: 707 LMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGV 766

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
            ++ KA+E+   +  L   +  +++Y  +I   C  GR+ EA + +  ++  G  P   T
Sbjct: 767 GDMKKAVELHNAI--LKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCIT 824

Query: 396 YKLVCDAL 403
           Y  +   L
Sbjct: 825 YTTMISEL 832



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 22/243 (9%)

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           L     M     +PD   Y  +I+A  + G+F +A  + + M   G  C P+  TYT +I
Sbjct: 667 LGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEG--CVPNEVTYTAVI 724

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY-RIERAL 307
           +  CK G            + EA  L   M     VP+ V Y C +D   K    +++A+
Sbjct: 725 NGLCKAGF-----------VNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAV 773

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
           EL + +  KG + N  TYN  IR +     +++A E++ +M  +  GV P   +YT +I 
Sbjct: 774 ELHNAI-LKGLLANTATYNMLIRGFCRQGRMEEASELITRM--IGDGVSPDCITYTTMIS 830

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIRD 422
            LC    V +A +    + + G  P    Y  +    C A    +   L ++ LR+ ++ 
Sbjct: 831 ELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKP 890

Query: 423 GIE 425
             E
Sbjct: 891 NTE 893



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 61/124 (49%), Gaps = 13/124 (10%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            YN++I   CR G   +A  L+ +M   G    PD  TYT +IS  C+           R
Sbjct: 789 TYNMLIRGFCRQGRMEEASELITRMIGDGV--SPDCITYTTMISELCR-----------R 835

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             + +A  L+  M  KG  PD VAYN LI GCC    + +A EL ++M ++G  PN  T 
Sbjct: 836 NDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTETS 895

Query: 326 NSFI 329
            + I
Sbjct: 896 ETTI 899



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 6/159 (3%)

Query: 266 RRIWEANHLFRLMLFK-GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           RR+ +   +F++M+ K   +P+V   + L+ G  K      A+ELFDDM   G  P+   
Sbjct: 170 RRVLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYI 229

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y   IR    + ++ +A EM+ +M+     V     Y  +I  LC+  +V EA     +L
Sbjct: 230 YTGVIRSLCELKDLSRAKEMIVQMEATGCDVNI-VPYNVLIDGLCKKQKVWEAVGIKKDL 288

Query: 385 VDGGSVPREYTY-KLVCDALNAAE---EPSLLDDGLRKR 419
                 P   TY  LVC      E      ++D+ LR R
Sbjct: 289 AGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLR 327


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 101/203 (49%), Gaps = 16/203 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  YNVV++ LC++GN  +A  LL++M   G    PD  TYT +I ++ + G      
Sbjct: 512 PDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG--VIPDYVTYTSIIHAHLENG------ 563

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +   +F  ML KG  P VV Y  LI G     R+ERA   F +M +KG +PN
Sbjct: 564 -----RLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPN 618

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            +TYNS I     V  +D+A     +M  +  G+ P   SYT +I+  C  G   EA   
Sbjct: 619 VITYNSLINGLCKVRRMDQAYNFFAEM--VEKGIFPNKYSYTILINENCNMGNWQEALSL 676

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
             +++D G  P   T+  +   L
Sbjct: 677 YKQMLDRGVQPDSCTHSALLKQL 699



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 113/246 (45%), Gaps = 29/246 (11%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + +A   F  ++     P +  YN +++ LCR G    A+ L  +M   G    PD+ 
Sbjct: 388 GNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI--APDIV 445

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHL---------------------FRL---M 278
           TYTIL++  CK G  +  ++     + E   L                     F L   M
Sbjct: 446 TYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEM 505

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           L KGF PD++ YN ++DG CK   +E A EL   M   G IP+ VTY S I  +     +
Sbjct: 506 LAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRL 565

Query: 339 DKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            K  E+  +M  L+ G+ P+  +YT +IH     GR+  A  + +E+ + G +P   TY 
Sbjct: 566 RKGREIFYEM--LSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYN 623

Query: 398 LVCDAL 403
            + + L
Sbjct: 624 SLINGL 629



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 14/243 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G V + L     M++  C P+   YNV+IN L + G F +A+ L+ +M   G +     Y
Sbjct: 248 GKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKV--SAY 305

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY  LI  Y   GM           + EA  L   M+ KG  P V  YN  I G CK  R
Sbjct: 306 TYNPLIYGYFNKGM-----------LAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGR 354

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +  A++   DM     +P+ V+YN+ I  Y  +  + KA  +  +++++ +  PT  +Y 
Sbjct: 355 MSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSI-YLFPTIVTYN 413

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            ++  LC  G +  A+    E+++ G  P   TY ++ +        S+  +   + + +
Sbjct: 414 TLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHE 473

Query: 423 GIE 425
           G+E
Sbjct: 474 GLE 476



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 114/272 (41%), Gaps = 51/272 (18%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G   T ++    I  L + G +++A+     M      PDV +YN +I   CR+GN  KA
Sbjct: 334 GASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKA 393

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L +  EL      P + TY  L+   C+ G            +  A  L   M+ +G 
Sbjct: 394 FLLFD--ELRSIYLFPTIVTYNTLLDGLCRQG-----------ELEVAQQLKVEMINEGI 440

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNK---------------------------- 315
            PD+V Y  L++G CK   +  A E FD+M                              
Sbjct: 441 APDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFS 500

Query: 316 -------KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
                  KG  P+ + YN  +     +  +++A E+++KM  ++ GV P   +YT IIHA
Sbjct: 501 LQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKM--VSDGVIPDYVTYTSIIHA 558

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             E GR+ + R+   E++  G  P   TY ++
Sbjct: 559 HLENGRLRKGREIFYEMLSKGLTPSVVTYTVL 590



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 14/230 (6%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           V+   +  LI V  ++ +V + L+ F +M + R  PDV   N ++  L      +KA  +
Sbjct: 162 VSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEV 221

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
              M   G +  P + TY  L+ SYCK G           ++ +   L   M  +G  P+
Sbjct: 222 YRTMGEFGIK--PTIVTYNTLLDSYCKGG-----------KVQQGLDLLSEMQRRGCAPN 268

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            V YN LI+G  K    E+A  L  +M K G   +  TYN  I  Y     + +A+ +  
Sbjct: 269 DVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQE 328

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +M  L    PT ++Y   I+ LC+ GR+ +A   L++++    +P   +Y
Sbjct: 329 EMV-LKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSY 377



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 16/187 (8%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + EA     +M      PD   Y  +I+A    G   K R +  +M   G    P V 
Sbjct: 528 GNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGL--TPSVV 585

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TYT+LI  +   G           R+  A   F  M  KG +P+V+ YN LI+G CK  R
Sbjct: 586 TYTVLIHGHAGKG-----------RLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRR 634

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           +++A   F +M +KG  PN+ +Y   I     +    +A+ + ++M  L+ GV P S ++
Sbjct: 635 MDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQM--LDRGVQPDSCTH 692

Query: 362 TPIIHAL 368
           + ++  L
Sbjct: 693 SALLKQL 699



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 13/158 (8%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I    E G + +    FY M      P V  Y V+I+     G   +A     +M+ 
Sbjct: 553 TSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQE 612

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P+V TY  LI+  CK            RR+ +A + F  M+ KG  P+  +Y  
Sbjct: 613 KGIL--PNVITYNSLINGLCKV-----------RRMDQAYNFFAEMVEKGIFPNKYSYTI 659

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           LI+  C     + AL L+  M  +G  P+  T+++ ++
Sbjct: 660 LINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLK 697



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 19/142 (13%)

Query: 167 VTTSSVTCLIKVLGE--EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA- 223
           +T S VT  + + G   +G +  A   F  M++    P+V  YN +IN LC+V   ++A 
Sbjct: 580 LTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAY 639

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EANHLFRLMLFKG 282
            F  E +E   F   P+ Y+YTILI+  C  G             W EA  L++ ML +G
Sbjct: 640 NFFAEMVEKGIF---PNKYSYTILINENCNMGN------------WQEALSLYKQMLDRG 684

Query: 283 FVPDVVAYNCLIDGCCKTYRIE 304
             PD   ++ L+    K  +++
Sbjct: 685 VQPDSCTHSALLKQLGKDCKLQ 706



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 7/150 (4%)

Query: 264 IRRRIWEAN-HLFRLMLFKGFVPDVVA---YNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           +  R+  AN H    +L  G V   V+    + LI    K   +E+ L +FD M K    
Sbjct: 137 VMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLS 196

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+    N  +R     + + KA+E+ R M     G+ PT  +Y  ++ + C+ G+V +  
Sbjct: 197 PDVKNCNRILRILRDKDLMSKAVEVYRTMGEF--GIKPTIVTYNTLLDSYCKGGKVQQGL 254

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           D L+E+   G  P + TY ++ + L+   E
Sbjct: 255 DLLSEMQRRGCAPNDVTYNVLINGLSKKGE 284


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 139/331 (41%), Gaps = 65/331 (19%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           +WD +  M R+G   +V   +   +++       V+EA+ TF  M+++   P++ A+N +
Sbjct: 121 MWDVVAIMRRQG---VVNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSL 177

Query: 211 INALCRVGNFNKARFLLEQME----------------------LPGFR----------CP 238
           + ALC+  N  KA+ + EQM                       LP  R          C 
Sbjct: 178 LCALCKSKNVRKAQEIFEQMNGRFSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQ 237

Query: 239 PDVYTYTILISSYCKYG------------MQTGCRK------------AIRRRIWEANHL 274
           PD+ TY I++ S CK G               GC+              +  RI +A   
Sbjct: 238 PDIVTYGIMVDSLCKTGRVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVAT 297

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           F  M   G VPDVV YN L+   CK  + + A  + DDM   G  PN  T+N  +     
Sbjct: 298 FLDMQKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLIS 357

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
           + + D+A  + R+M  +    P S +YT +I   CE  R+  A      +     +P  +
Sbjct: 358 LGKDDEAYRVFRRM--IKRCQPDSDTYTMMIKMFCENDRLEMALKVWKYMRLKQFLPSMH 415

Query: 395 TYKL----VCDALNAAEEPSLLDDGLRKRIR 421
           T+ +    +CD    ++   LL+D + K IR
Sbjct: 416 TFSVLINGLCDKGEVSQACVLLEDMIEKGIR 446



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 45/206 (21%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           ++DM+ RG     TT   + L+   G E  + +A+ATF  M++    PDV  YN ++ A 
Sbjct: 263 VQDMTSRGCQP--TTFIYSVLVHTYGVEMRIEDAVATFLDMQKDGIVPDVVVYNALVTAF 320

Query: 215 CRVGNFNKARFLLEQMELPGF--------------------------------RCPPDVY 242
           C+V  F+ A  +++ ME  G                                 RC PD  
Sbjct: 321 CKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIKRCQPDSD 380

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TYT++I  +C+             R+  A  +++ M  K F+P +  ++ LI+G C    
Sbjct: 381 TYTMMIKMFCE-----------NDRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGE 429

Query: 303 IERALELFDDMNKKGCIPNRVTYNSF 328
           + +A  L +DM +KG  P   T+   
Sbjct: 430 VSQACVLLEDMIEKGIRPPGSTFGKL 455


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 106/199 (53%), Gaps = 14/199 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M +      P+  T+T LI  +CK G     
Sbjct: 209 QPDVYTYSVLINGLCKENKMDDANKLFDEMLVKAL--VPNGVTFTTLIDGHCKNG----- 261

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +  +PD++ YN LI G CK   +++A +L D+M+ KG  P
Sbjct: 262 ------RVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQP 315

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +++TY + I       ++D A E  ++M   N  +    +YT +I  LC+ GR ++A   
Sbjct: 316 DKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD-DVAYTALISGLCQEGRSVDAEKM 374

Query: 381 LAELVDGGSVPREYTYKLV 399
           L E++  G  P   TY ++
Sbjct: 375 LREMLSVGLKPDARTYTMI 393



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 142 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 191

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A +LFD+M  K  +P
Sbjct: 192 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVP 245

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A 
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL---LPDLITYNTLIYGLCKKGDLKQAN 302

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 303 DLIDEMSMKGLQPDKITYTTLIDG 326



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 14/197 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEM 308

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G +  PD  TYT LI   CK G      +  +R I E   L           D VAY
Sbjct: 309 SMKGLQ--PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL-----------DDVAY 355

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ 
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 415

Query: 351 LNHGVPTSSSYTPIIHA 367
             H VP+  +Y  +++ 
Sbjct: 416 DGH-VPSVVTYNVLMNG 431



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 17/156 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
             +  ++K   D + +MS +G   + +T    T LI    +EG ++ A     RM Q   
Sbjct: 292 LCKKGDLKQANDLIDEMSMKGLQPDKIT---YTTLIDGCCKEGDLDTAFEHRKRMIQENI 348

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           R D  AY  +I+ LC+ G    A  +L +M   G +  PD  TYT++I+ +CK G     
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PDARTYTMIINEFCKKG----- 401

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                  +W+ + L + M   G VP VV YN L++G
Sbjct: 402 ------DVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 34/245 (13%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   +   A +++   + R G  + +      +E  G +   D+Y +
Sbjct: 17  HTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQ-RSDIYVF 75

Query: 245 TILISSYCKYGM---QTGCRKAIR-----------RRIWEANHLFRLMLFK---GFVPDV 287
           + LI+ Y + G       C +  R           R++ E  HL +L  FK   GF  ++
Sbjct: 76  SGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKVLE--HLMKLKYFKLVWGFYEEI 133

Query: 288 VA---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           +          +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  + ++
Sbjct: 134 LECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDL 193

Query: 339 DKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           D+   +   M  L  GV P   +Y+ +I+ LC+  ++ +A     E++    VP   T+ 
Sbjct: 194 DEGFRLKSAM--LASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFT 251

Query: 398 LVCDA 402
            + D 
Sbjct: 252 TLIDG 256


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M  KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E+++ G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 104/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +     R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWSLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  +++ A  LFD+M  KG +P
Sbjct: 186 ------DLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E++  G  P + TY  + D 
Sbjct: 297 DLIDEMIMKGLXPDKITYTTLIDG 320



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG   TT     LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANXLFDEMLDKGLVPNGVTFTT-----LIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G    PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLX--PDKITYTTLIDGNCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 17/260 (6%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +LVT   V   +  L + G  + A     +M+Q +  P V  YN +I+ LC+  + + A 
Sbjct: 15  DLVTYGVV---VNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 71

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            L ++ME  G R  P+V TY+ LIS  C YG           R  +A+ L   M+ +   
Sbjct: 72  NLFKEMETKGIR--PNVVTYSSLISCLCNYG-----------RWSDASRLLSDMIERKIN 118

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           PDV  ++ LID   K  ++  A +L+D+M K+   P+ VTY+S I  + + + +D+A +M
Sbjct: 119 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 178

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
              M +  H  P   +Y  +I   C+  RV E  +   E+   G V    TY ++   L 
Sbjct: 179 FEFMVS-KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLF 237

Query: 405 AAEEPSLLDDGLRKRIRDGI 424
            A +  +  +  ++ + DG+
Sbjct: 238 QAGDCDMAQEIFKEMVSDGV 257



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 29/247 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL  F  M+    RP+V  Y+ +I+ LC  G ++ A  LL  M     +  PDV+T+
Sbjct: 67  MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM--IERKINPDVFTF 124

Query: 245 TILISSYCKYGMQTGCRK------------------------AIRRRIWEANHLFRLMLF 280
           + LI ++ K G      K                         +  R+ EA  +F  M+ 
Sbjct: 125 SALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 184

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           K   PDVV YN LI G CK  R+E  +E+F +M+++G + N VTYN  I+      + D 
Sbjct: 185 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 244

Query: 341 AIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A E+ ++M  ++ GVP +  +Y  ++  LC+ G++ +A      L      P  YTY ++
Sbjct: 245 AQEIFKEM--VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 302

Query: 400 CDALNAA 406
            + +  A
Sbjct: 303 IEGMCKA 309



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 132/298 (44%), Gaps = 41/298 (13%)

Query: 150 GLWD----FLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G W      L DM  R+ N ++ T S+   LI    +EG + EA   +  M +    P +
Sbjct: 100 GRWSDASRLLSDMIERKINPDVFTFSA---LIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 156

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             Y+ +IN  C     ++A+ + E M      C PDV TY  LI  +CKY          
Sbjct: 157 VTYSSLINGFCMHDRLDEAKQMFEFM--VSKHCFPDVVTYNTLIKGFCKY---------- 204

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
            +R+ E   +FR M  +G V + V YN LI G  +    + A E+F +M   G  PN +T
Sbjct: 205 -KRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 263

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YN+ +       +++KA+ +   +Q  +   PT  +Y  +I  +C+AG+V +  D    L
Sbjct: 264 YNTLLDGLCKNGKLEKAMVVFEYLQR-SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 322

Query: 385 VDGGSVPREYTYKLV------------CDAL--NAAEEPSLLDDG-----LRKRIRDG 423
              G  P    Y  +             DAL     E+ +L + G     +R R+RDG
Sbjct: 323 SLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDG 380



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 19/234 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F +   V+   +  ++MS+RG   LV  T +   LI+ L + G  + A   F  M     
Sbjct: 201 FCKYKRVEEGMEVFREMSQRG---LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 257

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P++  YN +++ LC+ G   KA  + E ++    +  P +YTY I+I   CK G     
Sbjct: 258 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS--KMEPTIYTYNIMIEGMCKAG----- 310

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ +   LF  +  KG  PDVVAYN +I G C+    E A  LF +M + G +P
Sbjct: 311 ------KVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 364

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           N   YN+ IR      + + + E++++M++   G    +S   ++  +   GR+
Sbjct: 365 NSGCYNTLIRARLRDGDREASAELIKEMRSC--GFAGDASTIGLVTNMLHDGRL 416



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 18/173 (10%)

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           L+++M   G  C PD+ TY ++++  CK G               A +L   M      P
Sbjct: 3   LIDRMVAKG--CQPDLVTYGVVVNGLCKRGDTD-----------LAFNLLNKMEQGKLEP 49

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
            V+ YN +IDG CK   ++ AL LF +M  KG  PN VTY+S I           A  ++
Sbjct: 50  GVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLL 109

Query: 346 RKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             M  + +N   P   +++ +I A  + G+++EA     E+V     P   TY
Sbjct: 110 SDMIERKIN---PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 159


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 118/251 (47%), Gaps = 16/251 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L DM  +G G  +       +I     +G+V++AL     M++     D+Y YN +   
Sbjct: 339 LLADMQGQGVG--LNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACG 396

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LCRV   ++A+ LL  M   G    P+  TYT LIS +CK G            + EA  
Sbjct: 397 LCRVNRLDEAKTLLHIMIEMGV--VPNYVTYTTLISIHCKDG-----------DMVEARR 443

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LFR M  KG  P VV YN +IDG  K   I  A     +M KKG +P+  TY S +  + 
Sbjct: 444 LFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHC 503

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           V  ++D A+++  +M+      P   +YT +I  L + GR   A     +++  G +P +
Sbjct: 504 VNGKVDVALKLFEEMKQRGT-EPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDD 562

Query: 394 YTYKLVCDALN 404
             Y  +  +L+
Sbjct: 563 SLYSALVGSLH 573



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 14/236 (5%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
            T  + T L+  L     +++  A F  MK      DVY Y  VINA CR GN  +A  +
Sbjct: 245 ATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKV 304

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
           L+  E  G    P+  TY +LI+ +CK G           ++  A  L   M  +G   +
Sbjct: 305 LD--ECVGNGVEPNERTYGVLINGFCKIG-----------QMEAAEMLLADMQGQGVGLN 351

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            + +N +IDG C+   ++ AL++   M K G   +  TYN+       VN +D+A  ++ 
Sbjct: 352 QIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLH 411

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            M  +   VP   +YT +I   C+ G ++EAR    E+ + G+ P   TY ++ D 
Sbjct: 412 IMIEMGV-VPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDG 466



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 85/229 (37%), Gaps = 46/229 (20%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPG-------FRCPPDVY---------------- 242
           A +VV++ LC+ G  + AR LL+ M   G       +    D Y                
Sbjct: 179 AASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIM 238

Query: 243 ----------TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
                     TYTIL+ S            +  R I +   LF  M     V DV  Y  
Sbjct: 239 ENEGIEATVGTYTILVDSL-----------STARDISKVEALFNEMKANNVVGDVYLYTA 287

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +I+  C+   + RA ++ D+    G  PN  TY   I  +  + +++ A  ++  MQ   
Sbjct: 288 VINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQG 347

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK-LVC 400
            G+     +  +I   C  G V +A    A +   G     YTY  L C
Sbjct: 348 VGL-NQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLAC 395



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 17/188 (9%)

Query: 217 VGNFNKARFLLEQM--ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
            G    A  LLE+     PG   P      ++++   CK G           R+ +A  L
Sbjct: 154 AGRLADAAGLLERALGSCPGSVSP---LAASVVVDGLCKSG-----------RVDDARRL 199

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
              M   G   + + YN L+D   +     R  E+ + M  +G      TY   +   S 
Sbjct: 200 LDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLST 259

Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
             +I K   +  +M+  N+ V     YT +I+A C AG +  A   L E V  G  P E 
Sbjct: 260 ARDISKVEALFNEMKA-NNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNER 318

Query: 395 TYKLVCDA 402
           TY ++ + 
Sbjct: 319 TYGVLING 326


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 127/290 (43%), Gaps = 35/290 (12%)

Query: 144 RGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           R  N++     L+ M+  G   ++VT ++   L+  L + G + EA     RMK   C P
Sbjct: 164 REKNLEMADSLLQKMAASGVKADVVTYNT---LMDGLCKAGRLQEAEQLLERMKASGCAP 220

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------- 255
           DV AY+  +  LC+ G    A  +LEQM        P+V TY  ++   CK G       
Sbjct: 221 DVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHH--DPNVVTYNTILDGLCKSGKIDTALE 278

Query: 256 ------MQTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                    GC   +              R  EA  +   M   G  PDVV Y+ L++G 
Sbjct: 279 MMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGL 338

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-- 355
           CK  +IE A+E   +M  +GC PN VTY S +        + +A  M+ +M +   G   
Sbjct: 339 CKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHH 398

Query: 356 --PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             P+ S+Y  +I  LC+AGR+ +A  F   +   G  P   +Y  + + L
Sbjct: 399 CPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGL 448



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 98/212 (46%), Gaps = 13/212 (6%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M +  C P +  +N +I+  CR  N   A  LL++M   G +   DV TY  L+   CK 
Sbjct: 143 MIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVK--ADVVTYNTLMDGLCKA 200

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           R+ EA  L   M   G  PDVVAY+  + G CK+ ++  A ++ + M 
Sbjct: 201 G-----------RLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMR 249

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
                PN VTYN+ +       +ID A+EMM +M + +        Y+ ++  LC+ GR 
Sbjct: 250 DSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRT 309

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            EAR  +  +   G  P   TY  + + L  A
Sbjct: 310 QEARSVMEAMARAGCRPDVVTYSSLVNGLCKA 341



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 25/227 (11%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +P+V +YN ++  LC++  +++A  L+  M   G R  PD+ TY+ L+S YCK G     
Sbjct: 42  QPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEES 101

Query: 261 RKAIRRRIWEANHLFRLMLFK------------------------GFVPDVVAYNCLIDG 296
           R+ ++  I        LM  K                        G  P ++ +N LI G
Sbjct: 102 RELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISG 161

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
           CC+   +E A  L   M   G   + VTYN+ +        + +A +++ +M+  +   P
Sbjct: 162 CCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMK-ASGCAP 220

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              +Y+  ++ LC++G+VL+A   L ++ D    P   TY  + D L
Sbjct: 221 DVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGL 267



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 20/216 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           ++  L + G ++ AL    +M     C  +V  Y+ V++ LC++G   +AR ++E M   
Sbjct: 263 ILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARA 322

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C PDV TY+ L++  CK G           +I EA    R M  +G  P+ V Y  L
Sbjct: 323 G--CRPDVVTYSSLVNGLCKAG-----------KIEEAVEAVREMAMEGCKPNAVTYCSL 369

Query: 294 IDGCCKTYRIERALELFDDMNKKG-----CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           + G C   R+  A  + ++M+  G     C P+  TYN+ I        ID A++  ++M
Sbjct: 370 VHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRM 429

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           ++     P   SY+ I+  L  +GR L+A   L+E+
Sbjct: 430 RSQGCD-PDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 16/192 (8%)

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           CPP+  T+  L++ + K G           R  +   L   M  +   P+VV+YN L++G
Sbjct: 6   CPPNSVTFNALVNGFSKQG-----------RPGDCERLLETMAARDIQPNVVSYNGLLEG 54

Query: 297 CCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            CK  R   A EL  DM  +G    P+ VTY++ +  Y    +++++ E+++++  ++ G
Sbjct: 55  LCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEV--ISRG 112

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
           + P +  YT ++ +LC++ R+ EA + L E++  G  P   T+  +       +   + D
Sbjct: 113 LRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMAD 172

Query: 414 DGLRKRIRDGIE 425
             L+K    G++
Sbjct: 173 SLLQKMAASGVK 184



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 18/157 (11%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            ++ M+R G   ++VT SS   L+  L + G + EA+     M    C+P+   Y  +++
Sbjct: 315 VMEAMARAGCRPDVVTYSS---LVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVH 371

Query: 213 ALCRVGNFNKARFLLEQM---ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
            LC  G   +A  ++E+M      G  CPP V TY  LI   CK G           RI 
Sbjct: 372 GLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAG-----------RID 420

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           +A   F+ M  +G  PD V+Y+ +++G  ++ R  +A
Sbjct: 421 DALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score = 41.2 bits (95), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 18/126 (14%)

Query: 313 MNKKGCIPNRVTYNSFIRYYSVV---NEIDKAIEMM--RKMQNLNHGVPTSSSYTPIIHA 367
           M++ GC PN VT+N+ +  +S      + ++ +E M  R +Q      P   SY  ++  
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQ------PNVVSYNGLLEG 54

Query: 368 LCEAGRVLEARDFLAELVD--GGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIR 421
           LC+  R  EA + + +++   G S P   TY  +    C A    E   LL + + + +R
Sbjct: 55  LCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLR 114

Query: 422 -DGIEY 426
            D + Y
Sbjct: 115 PDALMY 120



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           + S+   LI  L + G +++AL  F RM+   C PD  +Y+ ++  L R G   +A  +L
Sbjct: 402 SVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMIL 461

Query: 228 EQM 230
            ++
Sbjct: 462 SEV 464


>gi|449466251|ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 136/285 (47%), Gaps = 19/285 (6%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           +A EF+++  +   F+H   +   M  +  R      +WD L D+  + +  L++  +V 
Sbjct: 90  QALEFFNYTAKRRGFYHTSFSVDTMLYILGRSRKFDKIWDVLLDVKFK-DPSLISLRTVM 148

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            ++  + +   V + + +F + K+F    DV  +N ++  LC+  +   AR +   ++  
Sbjct: 149 VVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMMDARNVYHGLK-S 207

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
            FR  P++ T+ IL+S +              +   EA   F  M+  G  PDVV+YNCL
Sbjct: 208 MFR--PNLQTFNILLSGW--------------KSSEEAEGFFDEMIEMGVKPDVVSYNCL 251

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +D  CK   +++A ++   M  +    + +TY S I    +V + DKA  ++++M+    
Sbjct: 252 VDVYCKNREMDKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEMKEYG- 310

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
             P  ++Y   I   C A R+ EA D L E+V+ G  P   TY L
Sbjct: 311 CYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNL 355



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 105/252 (41%), Gaps = 50/252 (19%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T +I  LG  G  ++A      MK++ C PDV AYN  I   C     ++A  LL++M
Sbjct: 282 TYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATIRNFCIAKRLHEAFDLLDEM 341

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P+  TY +    +                +  A +L+R M+  G +P+  + 
Sbjct: 342 VNKGL--SPNATTYNLFFRIF-----------FWSNDLQSAWNLYRRMMDTGCLPNTQSC 388

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             L+    K  + E ALEL++DM +KG       + S+I    +V+E             
Sbjct: 389 LFLVRLFKKYEKEEMALELWNDMIQKG-------FGSYI----LVSE------------- 424

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                        +   LC+ G+++EA     ++VD G  P   ++K +   +  A +  
Sbjct: 425 ------------ELFDLLCDLGKLIEAESCFLQMVDKGHKPSYTSFKRIKVLMELANKHE 472

Query: 411 LLDDGLRKRIRD 422
            L + L K++ D
Sbjct: 473 ALQN-LSKKMDD 483


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 135/267 (50%), Gaps = 18/267 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           +E+T   +  V+ +   +   +    +M + G    + T     LI  L + G ++ A  
Sbjct: 432 DEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGA--LIDGLCKHGELDTANE 489

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
               M++   + +V  YN ++N +C+ GN  +A  L+++ME+ G    PD  TYT +I +
Sbjct: 490 LLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGI--DPDAITYTTVIDA 547

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           YC+ G            I +A+ L + ML +G  P VV +N L++G C    +E    L 
Sbjct: 548 YCRLG-----------DIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLL 596

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALC 369
             M +KG +P+ +TYN+ ++ + + N ++   ++ ++M+  N GV P S++Y  +I   C
Sbjct: 597 GWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMR--NQGVAPDSNTYNILIKGHC 654

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTY 396
           +A  + EA     E+++ G VP   +Y
Sbjct: 655 KARNLKEAWFLYKEMIEKGYVPTVTSY 681



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 114/246 (46%), Gaps = 19/246 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    + G V  A   F  M   +  PD   Y  +I    + G   + + L  +M  
Sbjct: 367 TTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMIS 426

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  PD  TYT LI  YCK G            +  A  L   M+  G  P++V Y  
Sbjct: 427 RGLK--PDEVTYTTLIDVYCKAG-----------EMVNAFSLHNEMVQMGMTPNIVTYGA 473

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LIDG CK   ++ A EL D+M KKG   N   YNS +        I++AI++M++M+   
Sbjct: 474 LIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVA- 532

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
            G+ P + +YT +I A C  G + +A   L E++D G  P   T+ ++   +N      +
Sbjct: 533 -GIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVL---MNGFCMLGM 588

Query: 412 LDDGLR 417
           L+DG R
Sbjct: 589 LEDGDR 594



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 121/258 (46%), Gaps = 16/258 (6%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T+S   +I  L   G V EA     +M      PDV +Y+ VI+  C +G   KA  L++
Sbjct: 258 TTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMD 317

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M++ G +  P+ YTY  +I   CK G           + +EA  + R M+ +  +PD V
Sbjct: 318 DMQIKGLK--PNRYTYNSIILLLCKIG-----------KSFEAEKVLREMMSQKIIPDNV 364

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  LI G  K   +  A + FD+M  K   P+ +TY + I+ +    ++ +   +  +M
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEM 424

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
             ++ G+ P   +YT +I   C+AG ++ A     E+V  G  P   TY  + D L    
Sbjct: 425 --ISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHG 482

Query: 408 EPSLLDDGLRKRIRDGIE 425
           E    ++ L +  + G++
Sbjct: 483 ELDTANELLDEMRKKGLQ 500



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 15/188 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + R  ++      L++M  RG    V T +V  L+      G++ +       M +    
Sbjct: 548 YCRLGDIDKAHKLLQEMLDRGLQPTVVTFNV--LMNGFCMLGMLEDGDRLLGWMLEKGIV 605

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN ++   C   + N    + ++M   G    PD  TY ILI  +CK        
Sbjct: 606 PDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQG--VAPDSNTYNILIKGHCK-------- 655

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               R + EA  L++ M+ KG+VP V +YN LI    K  +   A ELF++M   G + +
Sbjct: 656 ---ARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVAD 712

Query: 322 RVTYNSFI 329
              YN F+
Sbjct: 713 GEIYNFFV 720



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 97/239 (40%), Gaps = 49/239 (20%)

Query: 179 LGEEGLVNEALATFYRMKQFRCR---------PDVYAYNVVINALCRVGNFNKARFLLEQ 229
           L  +  +N  L    +M QF  R         P+  A+++    L  +G+ ++AR LL++
Sbjct: 156 LVHDYFLNSKLEIGVKMTQFTHRLIYTYKYWGPNPIAFDIFFQVLVEIGHLSEARKLLDK 215

Query: 230 MELPGF------------RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           +   G             R   +     + I  +C+YG+            W        
Sbjct: 216 LLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGIS-----------W-------- 256

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
                   +  +YN +I   C+  +++ A  L   M+ +   P+ V+Y++ I  Y  + E
Sbjct: 257 --------NTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGE 308

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           + KA+++M  MQ +    P   +Y  II  LC+ G+  EA   L E++    +P    Y
Sbjct: 309 LKKALKLMDDMQ-IKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVY 366



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 14/137 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +N     + RM+     PD   YN++I   C+  N  +A FL ++M   G+   P V +Y
Sbjct: 624 MNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGY--VPTVTSY 681

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI  + K           +R+  EA  LF  M   G V D   YN  +D C +   +E
Sbjct: 682 NALIKRFYK-----------KRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730

Query: 305 RALELFDDMNKKGCIPN 321
             L L D+  +K C+ N
Sbjct: 731 ITLNLCDEAIEK-CLLN 746


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 126/265 (47%), Gaps = 20/265 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D  +++     G++      T  I  L + G ++EA A   +M +  C PD  +YNV+I 
Sbjct: 244 DEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIY 303

Query: 213 ALCRVGNFNKARFLLEQ-MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           +LC+    ++A+ L++Q ME    +C P V   T+L+   CK            RR+ EA
Sbjct: 304 SLCKDNRVSEAKELMDQAMER---KCMPGVPVCTVLVDGLCK-----------SRRVEEA 349

Query: 272 NHLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
             +   ML  G   P VV Y+ +IDG CK  R++ A  +   M + GC+P+ VTY + I 
Sbjct: 350 CVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIID 409

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            +  V  +D+A E+ ++M      +    +Y  +I   C A +V EA   + E+   G  
Sbjct: 410 AFCKVGRLDEARELFQRMHERGCALDV-VAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQ 468

Query: 391 PREYTYKLVCDAL---NAAEEPSLL 412
           P   +   + D L   +  EE  LL
Sbjct: 469 PNVVSLSTIVDGLCKESRVEEARLL 493



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 137/349 (39%), Gaps = 63/349 (18%)

Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVT-----TSSV 172
           F+ W +    F HN  TC  +  VF      +  +   KD       ELVT       + 
Sbjct: 3   FFQWAKARPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKD-------ELVTLFRPDDFTY 55

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             LI+   +   + +A+     MK     P +  +  +I  LC +   +KA  +  QM  
Sbjct: 56  GTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQM-- 113

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +  PD + YT++I   CK             ++  A   F  M+  G +PD V Y  
Sbjct: 114 IDMKVKPDAFLYTVVIGHLCKIN-----------KLDLAASYFERMVQSGCLPDKVTYTV 162

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+    K  + E+  ++F++M  KG  P  VTY + +  Y     ID+A+ +MR+++   
Sbjct: 163 LVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTG 222

Query: 353 HGVPTSS---------------------------------SYTPIIHALCEAGRVLEARD 379
              P+ S                                  YT  I  LC+AG++ EA+ 
Sbjct: 223 RS-PSGSLYSTLIDGLCKHDRHDEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKA 281

Query: 380 FLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIRDGI 424
              ++++ G  P   +Y ++    C     +E   L+D  + ++   G+
Sbjct: 282 VHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGV 330



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 138/349 (39%), Gaps = 81/349 (23%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
           F +   +    + L +M   G    +T + VT   LI+ L E    ++AL  F++M   +
Sbjct: 62  FCKAEQIPQAVNLLGEMKAAG----ITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMK 117

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS--------- 250
            +PD + Y VVI  LC++   + A    E+M   G  C PD  TYT+L+ S         
Sbjct: 118 VKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSG--CLPDKVTYTVLVHSLFKACKWEQ 175

Query: 251 --------------------------YCKYGMQTGCRKAIRR------------------ 266
                                     YCK G        +RR                  
Sbjct: 176 GHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLID 235

Query: 267 ------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R  EA  LF +    G V DV+ Y   I G CK  +++ A  +   M + GC P
Sbjct: 236 GLCKHDRHDEARELFEMA--AGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAP 293

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           + V+YN  I      N + +A E+M +   +    GVP     T ++  LC++ RV EA 
Sbjct: 294 DPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVC---TVLVDGLCKSRRVEEAC 350

Query: 379 DFLAELVDGGS-VPREYTYKLVCDALNAAEEPSLLDDG---LRKRIRDG 423
             L  +++ G   P   TY  V D L  A+    LDD    L+K  R G
Sbjct: 351 VILERMLETGDRAPSVVTYSAVIDGLCKADR---LDDAYVVLQKMRRAG 396


>gi|449511317|ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 136/285 (47%), Gaps = 19/285 (6%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           +A EF+++  +   F+H   +   M  +  R      +WD L D+  + +  L++  +V 
Sbjct: 90  QALEFFNYTAKRRGFYHTSFSVDTMLYILGRSRKFDKIWDVLLDVKFK-DPSLISLRTVM 148

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            ++  + +   V + + +F + K+F    DV  +N ++  LC+  +   AR +   ++  
Sbjct: 149 VVLGRIAKVCSVRQTVESFRKFKKFVPEFDVTCFNALLRTLCQEKSMMDARNVYHGLK-S 207

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
            FR  P++ T+ IL+S +              +   EA   F  M+  G  PDVV+YNCL
Sbjct: 208 MFR--PNLQTFNILLSGW--------------KSSEEAEGFFDEMIEMGVKPDVVSYNCL 251

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +D  CK   +++A ++   M  +    + +TY S I    +V + DKA  ++++M+    
Sbjct: 252 VDVYCKNREMDKAFKVVGKMRDEDIPADVITYTSIIGGLGLVGQPDKARNILKEMKEYG- 310

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
             P  ++Y   I   C A R+ EA D L E+V+ G  P   TY L
Sbjct: 311 CYPDVAAYNATIRNFCIAKRLHEAFDLLDEMVNKGLSPNATTYNL 355



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 50/254 (19%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T +I  LG  G  ++A      MK++ C PDV AYN  I   C     ++A  LL++M
Sbjct: 282 TYTSIIGGLGLVGQPDKARNILKEMKEYGCYPDVAAYNATIRNFCIAKRLHEAFDLLDEM 341

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P+  TY +    +                +  A +L+R M+  G +P+  + 
Sbjct: 342 VNKGL--SPNATTYNLFFRIF-----------FWSNDLQSAWNLYRRMMDTGCLPNTQSC 388

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             L+    K  + E ALEL++DM +KG       + S+I    +V+E             
Sbjct: 389 LFLVRLFKKYEKEEMALELWNDMIQKG-------FGSYI----LVSE------------- 424

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                        +   LC+ G+++EA     ++VD G  P   ++K +   +  A +  
Sbjct: 425 ------------ELFDLLCDLGKLIEAESCFLQMVDKGHKPSYTSFKRIKVLMELANKHE 472

Query: 411 LLDDGLRKRIRDGI 424
            L + L K++ D I
Sbjct: 473 ALQN-LSKKMDDII 485


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 110/231 (47%), Gaps = 15/231 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L++ L  EG V +ALA    +K     PD+  YNV I+   + GN + A     +++ 
Sbjct: 218 TTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKA 277

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  PD  +YT +I   CK G           R+ EA  LF  M  +  VP   AYN 
Sbjct: 278 QGLK--PDDVSYTSMIWVLCKAG-----------RLGEAEELFAQMEAERSVPCAYAYNT 324

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +I G     R E A +L + + ++GCIP+ V++NS +       ++D+A+ +   M+   
Sbjct: 325 MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK--K 382

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              P SS+Y  II  LC  GRV EA   L E+      P   T  ++ D L
Sbjct: 383 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRL 433



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 161/372 (43%), Gaps = 77/372 (20%)

Query: 82  ILKKEA------YNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERF--FDFFHNEM 133
           ++KK+A      YNI  ++L LG               +  E Y  ++       F N +
Sbjct: 379 VMKKDAEPNSSTYNIIIDMLCLG--------------GRVEEAYRILDEMEHASLFPNLL 424

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATF 192
           T   M     +   ++  +   +  S+RG N + VT  S   LI  LG++G V+EA   F
Sbjct: 425 TVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS---LIDGLGKKGQVDEAYRLF 481

Query: 193 YRM-----------------------------KQFR------CRPDVYAYNVVINALCRV 217
            +M                             K F+      C+PD+   N  ++ + + 
Sbjct: 482 EKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKA 541

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G   K R + E +   GF   PDV +Y+ILI    K G           +  E +++F  
Sbjct: 542 GEVEKGRMIFEDIRSYGFL--PDVRSYSILIHGLTKAG-----------QARETSNIFHA 588

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M  +GF  D  AYN ++DG CK+ ++ +A E+ ++M +K   P   TY + +   + ++ 
Sbjct: 589 MKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDR 648

Query: 338 IDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +D+A  +  + +  + G+  +   Y+ +I    + GR+ EA   L E++  G  P  YT+
Sbjct: 649 LDEAYMLFEEAK--SKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTW 706

Query: 397 KLVCDALNAAEE 408
             + DAL  AEE
Sbjct: 707 NSLLDALVKAEE 718



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 123/267 (46%), Gaps = 19/267 (7%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M  VF  G   KG   F +D+  R  G L    S + LI  L + G   E    F+ MKQ
Sbjct: 535 MDCVFKAGEVEKGRMIF-EDI--RSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQ 591

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC-PPDVYTYTILISSYCKYGM 256
                D  AYN V++  C+ G  +KA  +LE+M+    +C  P V TY  ++    K   
Sbjct: 592 QGFALDARAYNAVVDGFCKSGKVHKAYEILEEMK---EKCVQPTVATYGAIVDGLAKID- 647

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                     R+ EA  LF     KG   +VV Y+ LIDG  K  RI+ A  + ++M KK
Sbjct: 648 ----------RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK 697

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           G  PN  T+NS +       EI++A+   + M+ +    P + +Y+ +I+ LC   +  +
Sbjct: 698 GLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMK-CPPNTYTYSILINGLCRVQKYNK 756

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A  F  ++   G VP   TY  +   L
Sbjct: 757 AFVFWQDMQKQGLVPNVVTYTTMISGL 783



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 18/196 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   +   +  L++M ++G    V T +      V  EE  +NEAL  F  MK+ +C 
Sbjct: 678 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEE--INEALVCFQSMKEMKCP 735

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+ Y Y+++IN LCRV  +NKA    + M+  G    P+V TYT +IS   K G      
Sbjct: 736 PNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGL--VPNVVTYTTMISGLAKVG------ 787

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I +A  LF      G +PD  ++N LI+G     R   A ++F++   +GC   
Sbjct: 788 -----NITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGC--- 839

Query: 322 RVTYNSFIRYYSVVNE 337
           R+   S I     +N+
Sbjct: 840 RINIKSCISLLDALNK 855



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 117/266 (43%), Gaps = 16/266 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V   ++ L++M  +     V T     ++  L +   ++EA   F   K     
Sbjct: 608 FCKSGKVHKAYEILEEMKEKCVQPTVATYGA--IVDGLAKIDRLDEAYMLFEEAKSKGIE 665

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            +V  Y+ +I+   +VG  ++A  +LE+M   G    P+VYT+  L+ +  K        
Sbjct: 666 LNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL--TPNVYTWNSLLDALVK-------- 715

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I EA   F+ M      P+   Y+ LI+G C+  +  +A   + DM K+G +PN
Sbjct: 716 ---AEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPN 772

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VTY + I   + V  I  A  +  + +  N G+P ++S+  +I  +  A R +EA    
Sbjct: 773 VVTYTTMISGLAKVGNITDAYSLFERFKA-NGGIPDAASFNALIEGMSNANRAMEAYQVF 831

Query: 382 AELVDGGSVPREYTYKLVCDALNAAE 407
            E    G      +   + DALN +E
Sbjct: 832 EETRLRGCRINIKSCISLLDALNKSE 857



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 17/247 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +  NV   W F  ++  +  G      S T +I VL + G + EA   F +M+  R  
Sbjct: 259 FGKAGNVDMAWKFFHEL--KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSV 316

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P  YAYN +I      G F  A  LLE++   G  C P V ++  +++   K        
Sbjct: 317 PCAYAYNTMIMGYGSAGRFEDAYKLLERLRERG--CIPSVVSFNSILTCLGK-------- 366

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              +R++ EA  LF +M  K   P+   YN +ID  C   R+E A  + D+M      PN
Sbjct: 367 ---KRKVDEALSLFEVMK-KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPN 422

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            +T N  +       ++++A ++           P   +Y  +I  L + G+V EA    
Sbjct: 423 LLTVNIMVDRLCKARKLEEAYKIFESASQRGCN-PDCVTYCSLIDGLGKKGQVDEAYRLF 481

Query: 382 AELVDGG 388
            +++D G
Sbjct: 482 EKMLDAG 488


>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 134/280 (47%), Gaps = 18/280 (6%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDLWV 84

Query: 175 L-IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L I   G+ G+V E++  F +M++      + +Y+ +   + R G +  A+    +M   
Sbjct: 85  LMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ +++  +   G           ++  AN  F  M  +  +PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMMWGFFLSG-----------KVETANRFFEDMKSREIMPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ++G C+  ++E A + F +M  +   P  VTY + I+ Y  V+ +D A+ ++ +M+    
Sbjct: 192 VNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGM 251

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             P + +Y+ ++  LC A ++ EAR  L E+V+    P +
Sbjct: 252 K-PNAITYSTLLPGLCNAEKMSEARSILKEMVEKYIAPTD 290



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 102/239 (42%), Gaps = 31/239 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDLWV--LMIDSYGKAGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N ++ G   + ++E 
Sbjct: 109 LGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +  +P+ VTYN+ +  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREIMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRI 420
                  RV +A   + E+   G  P   TY      +C+A   +E  S+L + + K I
Sbjct: 228 KGYVSVDRVDDALRLVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVEKYI 286



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 91/251 (36%), Gaps = 60/251 (23%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G V  A   F  MK     PDV  YN ++N  CRV    +A      +E+ G    P V 
Sbjct: 164 GKVETANRFFEDMKSREIMPDVVTYNTMVNGYCRVKKMEEAEKYF--VEMKGRNIEPTVV 221

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TYT LI  Y               R+ +A  L   M   G  P+ + Y+ L+ G C   +
Sbjct: 222 TYTTLIKGYVSVD-----------RVDDALRLVEEMKGFGMKPNAITYSTLLPGLCNAEK 270

Query: 303 IERALELFDDMNKKGCIPNRVT------------------------------------YN 326
           +  A  +  +M +K   P   +                                    Y 
Sbjct: 271 MSEARSILKEMVEKYIAPTDNSIFMRLISGQCKAGDLDAAANVLKAMIRLSVPTEAGHYG 330

Query: 327 SFIRYYSVVNEIDKAIEMMRKM---------QNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             I  Y    E DKAI+++ K+         Q+  H    SS+Y P+I  LC  G+  +A
Sbjct: 331 VLIENYCKAGEYDKAIKLLDKVIEKDIILRPQSTLH--MESSAYNPLIEYLCNNGQTAKA 388

Query: 378 RDFLAELVDGG 388
              + +L+  G
Sbjct: 389 EALVRQLMKLG 399


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 101/201 (50%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +     R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWSLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M   G +PN V
Sbjct: 186 ---DLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+D +
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQDLI 299

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+   G  P + TY  + D 
Sbjct: 300 DEMSMKGLKPDKITYTTLIDG 320



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 36/214 (16%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG +    + T LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANELFDEMLD-----NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK--PDKITYTTLIDGNCKE 324

Query: 255 G-MQTG-------CRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAY 290
           G ++T         ++ IR                 R  +A  + R ML  G  P++  Y
Sbjct: 325 GDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             +I+  CK   +    +L  +M + GC+P+ VT
Sbjct: 385 TMIINEFCKKGDVWTGSKLLKEMQRDGCMPSVVT 418


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 103/210 (49%), Gaps = 18/210 (8%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           F  M++     D   Y  +IN LCR G   +A  +L++M     R   D  TYT+L+  Y
Sbjct: 387 FDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEM--LARRLDVDEVTYTVLVDGY 444

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK G           ++ EA  +   M+ +G  P+VV Y  L DG CK   ++ A EL  
Sbjct: 445 CKRG-----------KMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLH 493

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG--VPTSSSYTPIIHALC 369
           +M+ KG   N  TYNS I        +D+A   MR M +++     P   +YT +I ALC
Sbjct: 494 EMSNKGLELNACTYNSLINGLCKAGYLDQA---MRTMADMDAAGLKPDVYTYTTLIDALC 550

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           ++G +  A D L E++D G  P   TY ++
Sbjct: 551 KSGELDRAHDLLQEMLDNGIKPTIVTYNVL 580



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 16/231 (6%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M +RG    V T   T L   L ++G V  A    + M       +   YN +IN LC+ 
Sbjct: 460 MVQRGVAPNVVT--YTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKA 517

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G  ++A   +  M+  G +  PDVYTYT LI + CK G            +  A+ L + 
Sbjct: 518 GYLDQAMRTMADMDAAGLK--PDVYTYTTLIDALCKSG-----------ELDRAHDLLQE 564

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           ML  G  P +V YN L++G C + R+E   +L + M +K   PN  TYNS ++ Y + N 
Sbjct: 565 MLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNN 624

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +    E+ + M + N   P  ++Y  +I   C+A  + EA+ F  E+++ G
Sbjct: 625 MKSTTEIYKGMCSRN-VEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKG 674



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 127/272 (46%), Gaps = 16/272 (5%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L DM  RG     T    T ++ +L ++G V++AL     M   +   D   Y  V++ 
Sbjct: 316 LLDDMVARGVEPNATV--YTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSG 373

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C  G+   AR   ++M+  G     D  TYT LI+  C+ G            + EA  
Sbjct: 374 FCNKGDLVSARRWFDEMQRKGL--ATDGVTYTTLINGLCRAG-----------ELKEAEK 420

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           + + ML +    D V Y  L+DG CK  ++  A ++ + M ++G  PN VTY +      
Sbjct: 421 VLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLC 480

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
              ++  A E++ +M N    +  + +Y  +I+ LC+AG + +A   +A++   G  P  
Sbjct: 481 KQGDVQAANELLHEMSNKGLEL-NACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDV 539

Query: 394 YTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           YTY  + DAL  + E     D L++ + +GI+
Sbjct: 540 YTYTTLIDALCKSGELDRAHDLLQEMLDNGIK 571



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 121/275 (44%), Gaps = 24/275 (8%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           N +T   +     +  +V+   + L +MS +G    +   +   LI  L + G +++A+ 
Sbjct: 468 NVVTYTALSDGLCKQGDVQAANELLHEMSNKGLE--LNACTYNSLINGLCKAGYLDQAMR 525

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
           T   M     +PDVY Y  +I+ALC+ G  ++A  LL++M   G +  P + TY +L++ 
Sbjct: 526 TMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIK--PTIVTYNVLMNG 583

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           +C  G   G +K           L   ML K   P+   YN L+   C    ++   E++
Sbjct: 584 FCMSGRVEGGKK-----------LLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIY 632

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI----EMMRKMQNLNHGVPTSSSYTPIIH 366
             M  +   PN  TYN  I+ +     + +A     EM+ K   L     T+SSY+ +I 
Sbjct: 633 KGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRL-----TASSYSALIR 687

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
            L +  + +EAR    ++   G       Y    D
Sbjct: 688 LLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYID 722



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 99/234 (42%), Gaps = 35/234 (14%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD--VYTYTILISSY 251
           R++Q+   P   A N V++ L           L E +EL  F+  PD  V +Y IL+   
Sbjct: 225 RVRQYGISPSPEACNAVLSRLP----------LDEAIEL--FQGLPDKNVCSYNILLKVL 272

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           C  G           R+ +A  LF  M      PDVV Y  LI G C    +E A++L D
Sbjct: 273 CGAG-----------RVEDARQLFDEM---ASPPDVVTYGILIHGYCALGELENAVKLLD 318

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCE 370
           DM  +G  PN   Y S +        +  A+ ++  M  ++H V    + YT ++   C 
Sbjct: 319 DMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDM--VHHKVILDEAVYTTVLSGFCN 376

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRI 420
            G ++ AR +  E+   G      TY      +C A    E   +L + L +R+
Sbjct: 377 KGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRL 430



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 71/183 (38%), Gaps = 26/183 (14%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI  L + G ++ A      M     +P +  YNV++N  C  G     + LLE M  
Sbjct: 543 TTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLE 602

Query: 233 PGFRCPPDVYTYTILISSYC-KYGMQTG-------CRKAIR----------------RRI 268
                 P+  TY  L+  YC    M++        C + +                 R +
Sbjct: 603 KNIH--PNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSM 660

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            EA +    M+ KGF     +Y+ LI    K  +   A +LF DM K+G       YN +
Sbjct: 661 KEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFY 720

Query: 329 IRY 331
           I +
Sbjct: 721 IDF 723


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +     R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWSLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M   G +P
Sbjct: 186 ------DLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDG 320



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG +    + T LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANELFDEMLD-----NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK--PDKITYTTLIDGNCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
          Length = 583

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 117/249 (46%), Gaps = 15/249 (6%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           A GN  K L +  K M+  G G  + T ++  ++  L      ++A++ F  MK      
Sbjct: 93  AAGNWKKAL-ELCKKMTENGVGPDLVTHNI--VLSALKNGAQYSKAISYFEIMKGANVTS 149

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D +  N++I+ L ++G   +A  L   M     +CPPDV TYT ++ SYC YG    C+ 
Sbjct: 150 DTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKA 209

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                      +F LM+ +G  P++VAYN L+           AL +F+ + K G  P+ 
Sbjct: 210 -----------IFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDI 258

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           V+Y S +  Y    + +KA E+  KM+  N   P   SY  +I A   AG + EA   L 
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKK-NSCKPNKVSYNALIDAYGSAGMLKEAVGLLH 317

Query: 383 ELVDGGSVP 391
           E+   G  P
Sbjct: 318 EMEKDGIQP 326



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 20/259 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           ++ +  N K ++D +     + N  +V  +S   L+      G+  EALA F  +K+   
Sbjct: 200 IYGQVENCKAIFDLMVAEGVKPN--IVAYNS---LLGAYASRGMHREALAIFNLIKKNGL 254

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           RPD+ +Y  ++NA  R     KAR +  +M+     C P+  +Y  LI +Y   GM    
Sbjct: 255 RPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNS--CKPNKVSYNALIDAYGSAGM---- 308

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  + EA  L   M   G  PDVV+ + L+  C +  +I R   + +    +G   
Sbjct: 309 -------LKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDL 361

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N V YNS I+ Y    + +KA+E+   M+  N   P + +Y  +I    + G+  E+  F
Sbjct: 362 NTVAYNSGIKSYLSFGDYEKALELYTSMRESNVK-PDAVTYNILISGSSKLGKYTESLRF 420

Query: 381 LAELVDGG-SVPREYTYKL 398
             ++VD   S  +E+ + +
Sbjct: 421 FEDMVDSKVSSTKEFLWTI 439



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I++      V++A   F+ M+++RC+PD   YN +I+A  R G +  A  ++E M    
Sbjct: 17  MIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAA 76

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
              PP   TY  +I++ C  G     +KA+         L + M   G  PD+V +N ++
Sbjct: 77  I--PPTRTTYNNVINA-C--GAAGNWKKAL--------ELCKKMTENGVGPDLVTHNIVL 123

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
                  +  +A+  F+ M       +  T N  I     + +  +AIE+   M+     
Sbjct: 124 SALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTK 183

Query: 355 VPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            P    +YT I+H+ C  G+V   +     +V  G  P    Y  +  A
Sbjct: 184 CPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGA 232



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  +I    +  ++++A  LF +M +  C P+   YNS I  +S   +   AI +M  M 
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDM- 72

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            L   + PT ++Y  +I+A   AG   +A +   ++ + G  P   T+ +V  AL    +
Sbjct: 73  -LRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 409 PS 410
            S
Sbjct: 132 YS 133


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 117/249 (46%), Gaps = 15/249 (6%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           A GN  K L +  K M+  G G  + T ++  ++  L      ++A++ F  MK      
Sbjct: 93  AAGNWKKAL-ELCKKMTENGVGPDLVTHNI--VLSALKNGAQYSKAISYFEIMKGANVTS 149

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D +  N++I+ L ++G   +A  L   M     +CPPDV TYT ++ SYC YG    C+ 
Sbjct: 150 DTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKA 209

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                      +F LM+ +G  P++VAYN L+           AL +F+ + K G  P+ 
Sbjct: 210 -----------IFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDI 258

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           V+Y S +  Y    + +KA E+  KM+  N   P   SY  +I A   AG + EA   L 
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKK-NSCKPNKVSYNALIDAYGSAGMLKEAVGLLH 317

Query: 383 ELVDGGSVP 391
           E+   G  P
Sbjct: 318 EMEKDGIQP 326



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 113/246 (45%), Gaps = 19/246 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           ++ +  N K ++D +     + N  +V  +S   L+      G+  EALA F  +K+   
Sbjct: 200 IYGQVENCKAIFDLMVAEGVKPN--IVAYNS---LLGAYASRGMHREALAIFNLIKKNGL 254

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           RPD+ +Y  ++NA  R     KAR +  +M+     C P+  +Y  LI +Y   GM    
Sbjct: 255 RPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNS--CKPNKVSYNALIDAYGSAGM---- 308

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  + EA  L   M   G  PDVV+ + L+  C +  +I R   + +    +G   
Sbjct: 309 -------LKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDL 361

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N V YNS I+ Y    + +KA+E+   M+  N   P + +Y  +I    + G+  E+  F
Sbjct: 362 NTVAYNSGIKSYLSFGDYEKALELYTSMRESNVK-PDAVTYNILISGSSKLGKYTESLRF 420

Query: 381 LAELVD 386
             ++VD
Sbjct: 421 FEDMVD 426



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I++      V++A   F+ M+++RC+PD   YN +I+A  R G +  A  ++E M    
Sbjct: 17  MIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAA 76

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
              PP   TY  +I++ C  G     +KA+         L + M   G  PD+V +N ++
Sbjct: 77  I--PPTRTTYNNVINA-C--GAAGNWKKAL--------ELCKKMTENGVGPDLVTHNIVL 123

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
                  +  +A+  F+ M       +  T N  I     + +  +AIE+   M+     
Sbjct: 124 SALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTK 183

Query: 355 VPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            P    +YT I+H+ C  G+V   +     +V  G  P    Y  +  A
Sbjct: 184 CPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGA 232



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 103/269 (38%), Gaps = 39/269 (14%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S T L+   G      +A   F +MK+  C+P+  +YN +I+A    G   +A  LL +M
Sbjct: 260 SYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM 319

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRK---------AIRRRIWEAN--------- 272
           E  G +  PDV + + L+++  +      CR+         A R R  + N         
Sbjct: 320 EKDGIQ--PDVVSISTLLAACGR------CRQITRIETILEAARSRGIDLNTVAYNSGIK 371

Query: 273 ------------HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                        L+  M      PD V YN LI G  K  +   +L  F+DM       
Sbjct: 372 SYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSS 431

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
            +  Y+S I  Y    ++ +A      M+  +   P   +YT +I A    G    A D 
Sbjct: 432 TKEVYSSLIYSYIKQGKLSEAESTFSSMKK-SGCFPDVLTYTTLIQAYNAGGGWKRAWDL 490

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEP 409
             E+   G  P       + +A N   EP
Sbjct: 491 FKEMEVNGIPPDAIICSSLMEAFNKGGEP 519



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 17/227 (7%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G  + T +    IK     G   +AL  +  M++   +PD   YN++I+   ++G +
Sbjct: 355 RSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKY 414

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            ++    E M         +VY+   LI SY K G           ++ EA   F  M  
Sbjct: 415 TESLRFFEDMVDSKVSSTKEVYSS--LIYSYIKQG-----------KLSEAESTFSSMKK 461

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  PDV+ Y  LI         +RA +LF +M   G  P+ +  +S +  ++   E ++
Sbjct: 462 SGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPER 521

Query: 341 AIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            +++M  M+     +P    SY  II A C   R  +    + E +D
Sbjct: 522 VLQLMEFMK--KKSIPLNQKSYFEII-ASCTMIRDWKTASEMIEYLD 565



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 109/251 (43%), Gaps = 26/251 (10%)

Query: 154 FLKDM--SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           F +DM  S+  + + V +S +   IK    +G ++EA +TF  MK+  C PDV  Y  +I
Sbjct: 420 FFEDMVDSKVSSTKEVYSSLIYSYIK----QGKLSEAESTFSSMKKSGCFPDVLTYTTLI 475

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
            A    G + +A  L ++ME+ G   PPD    + L+ ++ K G              E 
Sbjct: 476 QAYNAGGGWKRAWDLFKEMEVNGI--PPDAIICSSLMEAFNKGG--------------EP 519

Query: 272 NHLFRLMLF--KGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
             + +LM F  K  +P +  +Y  +I  C      + A E+ + ++      +  T N  
Sbjct: 520 ERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHV 579

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           + +     + +  +++  KM      V   S+Y  ++  L   G+  +  + L  + D G
Sbjct: 580 LNFLGKCGKTENMMKLFYKMVTSCSTVGL-STYAVVLRNLLVVGKWRKYIEVLQWMEDSG 638

Query: 389 SVPREYTYKLV 399
             P  Y ++ V
Sbjct: 639 VHPTLYMFQNV 649



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  +I    +  ++++A  LF +M +  C P+   YNS I  +S   +   AI +M  M 
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDM- 72

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            L   + PT ++Y  +I+A   AG   +A +   ++ + G  P   T+ +V  AL    +
Sbjct: 73  -LRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 409 PS 410
            S
Sbjct: 132 YS 133


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 135/267 (50%), Gaps = 18/267 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           +E+T   +  V+ +   +   +    +M + G    + T     LI  L + G ++ A  
Sbjct: 432 DEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGA--LIDGLCKHGELDTANE 489

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
               M++   + +V  YN ++N +C+ GN  +A  L+++ME+ G    PD  TYT +I +
Sbjct: 490 LLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGI--DPDAITYTTVIDA 547

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           YC+ G            I +A+ L + ML +G  P VV +N L++G C    +E    L 
Sbjct: 548 YCRLG-----------DIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLL 596

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALC 369
             M +KG +P+ +TYN+ ++ + + N ++   ++ ++M+  N GV P S++Y  +I   C
Sbjct: 597 GWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMR--NQGVAPDSNTYNILIKGHC 654

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTY 396
           +A  + EA     E+++ G VP   +Y
Sbjct: 655 KARNLKEAWFLYKEMIEKGYVPTVTSY 681



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 114/246 (46%), Gaps = 19/246 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    + G V  A   F  M   +  PD   Y  +I    + G   + + L  +M  
Sbjct: 367 TTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMIS 426

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  PD  TYT LI  YCK G            +  A  L   M+  G  P++V Y  
Sbjct: 427 RGLK--PDEVTYTTLIDVYCKAG-----------EMVNAFSLHNEMVQMGMTPNIVTYGA 473

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LIDG CK   ++ A EL D+M KKG   N   YNS +        I++AI++M++M+   
Sbjct: 474 LIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVA- 532

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
            G+ P + +YT +I A C  G + +A   L E++D G  P   T+ ++   +N      +
Sbjct: 533 -GIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVL---MNGFCMLGM 588

Query: 412 LDDGLR 417
           L+DG R
Sbjct: 589 LEDGDR 594



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 121/258 (46%), Gaps = 16/258 (6%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T+S   +I  L   G V EA     +M      PDV +Y+ VI+  C +G   KA  L++
Sbjct: 258 TTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMD 317

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M++ G +  P+ YTY  +I   CK G           + +EA  + R M+ +  +PD V
Sbjct: 318 DMQIKGLK--PNRYTYNSIILLLCKIG-----------KSFEAEKVLREMMSQKIIPDNV 364

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  LI G  K   +  A + FD+M  K   P+ +TY + I+ +    ++ +   +  +M
Sbjct: 365 VYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEM 424

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
             ++ G+ P   +YT +I   C+AG ++ A     E+V  G  P   TY  + D L    
Sbjct: 425 --ISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHG 482

Query: 408 EPSLLDDGLRKRIRDGIE 425
           E    ++ L +  + G++
Sbjct: 483 ELDTANELLDEMRKKGLQ 500



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 15/188 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + R  ++      L++M  RG    V T +V  L+      G++ +       M +    
Sbjct: 548 YCRLGDIDKAHKLLQEMLDRGLQPTVVTFNV--LMNGFCMLGMLEDGDRLLGWMLEKGIV 605

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN ++   C   + N    + ++M   G    PD  TY ILI  +CK        
Sbjct: 606 PDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQG--VAPDSNTYNILIKGHCK-------- 655

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               R + EA  L++ M+ KG+VP V +YN LI    K  +I  A ELF++M   G + +
Sbjct: 656 ---ARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVAD 712

Query: 322 RVTYNSFI 329
              YN F+
Sbjct: 713 GEIYNFFV 720



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 97/239 (40%), Gaps = 49/239 (20%)

Query: 179 LGEEGLVNEALATFYRMKQFRCR---------PDVYAYNVVINALCRVGNFNKARFLLEQ 229
           L  +  +N  L    +M QF  R         P+  A+++    L  +G+ ++AR LL++
Sbjct: 156 LVHDYFLNSKLEIGVKMTQFTHRLIYTYKYWGPNPIAFDIFFQVLVEIGHLSEARKLLDK 215

Query: 230 MELPGF------------RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           +   G             R   +     + I  +C+YG+            W        
Sbjct: 216 LLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGIS-----------W-------- 256

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
                   +  +YN +I   C+  +++ A  L   M+ +   P+ V+Y++ I  Y  + E
Sbjct: 257 --------NTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGE 308

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           + KA+++M  MQ +    P   +Y  II  LC+ G+  EA   L E++    +P    Y
Sbjct: 309 LKKALKLMDDMQ-IKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVY 366



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 14/138 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +N     + RM+     PD   YN++I   C+  N  +A FL ++M   G+   P V +Y
Sbjct: 624 MNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGY--VPTVTSY 681

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI  + K           +++I EA  LF  M   G V D   YN  +D C +   +E
Sbjct: 682 NALIKRFYK-----------KKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730

Query: 305 RALELFDDMNKKGCIPNR 322
             L L D+  +K C+ N 
Sbjct: 731 ITLNLCDEAIEK-CLLNE 747


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 117/233 (50%), Gaps = 14/233 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    E G+V+EAL     M++     DV+AYN + + LC++   ++A+ LL  M   G
Sbjct: 406 LIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERG 465

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+  ++T LI  YCK G              EA  +FR M  KG VP+++ YN LI
Sbjct: 466 --VSPNTMSFTTLIDIYCKEG-----------NFVEAKRVFREMEEKGNVPNIITYNVLI 512

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  K   ++ A +L D++  +G IP+  T  S I    +  ++D A+++  +M      
Sbjct: 513 DGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGL- 571

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
           VP   +YT +I  L + GR  EA     E+ + G  P +  Y  +  +L++AE
Sbjct: 572 VPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSAE 624



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 124/277 (44%), Gaps = 21/277 (7%)

Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           ++ G+ + L  M + G    V T   T LI      G + EA   F  M++     DVY 
Sbjct: 275 DLGGVAEILTLMEKEGVACNVVT--YTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYV 332

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           Y  +I+  CR GN  +A  L ++M   G    P  +TY  LI   CK G           
Sbjct: 333 YTSIISCNCRSGNVKRALVLFDEMTDKGL--IPSAHTYGALIHGVCKAG----------- 379

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++  A  L   M  KG   + V +N LIDG C++  ++ AL L   M KKG   +   YN
Sbjct: 380 QMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYN 439

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           S       +N  D+A  ++  M  +  GV P + S+T +I   C+ G  +EA+    E+ 
Sbjct: 440 SIASGLCKLNRKDEAKGLLFSM--VERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREME 497

Query: 386 DGGSVPREYTYKLVCDALNA---AEEPSLLDDGLRKR 419
           + G+VP   TY ++ D  +     +E   L D L  R
Sbjct: 498 EKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENR 534



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 89/186 (47%), Gaps = 18/186 (9%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R +  KGL   L  M  RG      T S T LI +  +EG   EA   F  M++    P+
Sbjct: 450 RKDEAKGL---LFSMVERGVSP--NTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPN 504

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +  YNV+I+   + GN  +A  L +++E  G    PDVYT T LI   C           
Sbjct: 505 IITYNVLIDGYSKRGNMKEAHKLKDELENRGL--IPDVYTCTSLIHGEC----------- 551

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
           I  ++  A  LF  M  +G VP+VV Y  +I G  K  R E A +L+D+M + G  P+  
Sbjct: 552 IDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDT 611

Query: 324 TYNSFI 329
            Y+S +
Sbjct: 612 VYSSLV 617



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 102/243 (41%), Gaps = 53/243 (21%)

Query: 173 TCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ- 229
           +CL+ +L     G V+  L  F RM        VY+  +V++ LC+ G+    R L+++ 
Sbjct: 192 SCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEV 251

Query: 230 ----------------------------------MELPGFRCPPDVYTYTILISSYCKYG 255
                                             ME  G  C  +V TYT+LI  +   G
Sbjct: 252 AAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVAC--NVVTYTLLIHGFSNIG 309

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                      +I EA  LF  M  KG   DV  Y  +I   C++  ++RAL LFD+M  
Sbjct: 310 -----------KIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTD 358

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRV 374
           KG IP+  TY + I       +++ A  ++ +MQ    G+  +   +  +I   CE+G V
Sbjct: 359 KGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQ--GKGIDLNPVIFNTLIDGYCESGMV 416

Query: 375 LEA 377
            EA
Sbjct: 417 DEA 419


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 135/296 (45%), Gaps = 29/296 (9%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
            F +++T   +  + ++  +     +FL++   RG    V     + ++     +G ++ 
Sbjct: 308 LFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQ--VDKVGYSAIVNSFCMQGRMDR 365

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A      M    C PDV  Y  V+N LC+VG   +A+ +L+QM   G  C P+  +YT L
Sbjct: 366 AKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHG--CKPNTVSYTAL 423

Query: 248 ISSYCKYGMQTGCRK----------------------AIRR--RIWEANHLFRLMLFKGF 283
           ++  C++G     R+                       +RR  ++ EA  + R ML KGF
Sbjct: 424 LNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGF 483

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P  V  N LI   C   ++  A +  ++   +GC  N V + + I  +   + ID A+ 
Sbjct: 484 FPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALS 543

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           ++  M  LN+  P + ++T II AL + GR+ EA  +  +++  G  P   TY+ V
Sbjct: 544 LLDDMY-LNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAV 598



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 135/296 (45%), Gaps = 21/296 (7%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEA 188
           N + C     V    N ++    FL+ M   G    +T + VT  CLIK   +   V  A
Sbjct: 205 NLLICNTAIHVLVMANKLEKALRFLERMQLVG----ITPNVVTYNCLIKGYCDLYQVEHA 260

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           +     M    C PD  +Y  V+  LC+     + R L+E+M +   +  PD  TY  L+
Sbjct: 261 MELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKM-VKDNKLFPDQVTYNTLV 319

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
               K+G              EA    R    +GF  D V Y+ +++  C   R++RA E
Sbjct: 320 HMLSKHGHAD-----------EALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKE 368

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
           + ++M  KGC P+ VTY + +     V ++++A +M+++M    HG  P + SYT +++ 
Sbjct: 369 IVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQM--YKHGCKPNTVSYTALLNG 426

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           LC+ G  LEAR+ +    +    P   TY +V   L    + S   D +R+ +  G
Sbjct: 427 LCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKG 482



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 128/290 (44%), Gaps = 17/290 (5%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F++W  R + + H+ +    M  V ++    +G    L+ M RRG        +   
Sbjct: 119 ALDFFYWAGRQWRYRHDPIVYYMMLQVLSKTKLCQGARRVLRLMVRRGIAR--RPEAFAH 176

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++      G +  A+     M++    P++   N  I+ L       KA   LE+M+L G
Sbjct: 177 VMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVG 236

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V TY  LI  YC              ++  A  L   M FKG  PD V+Y  ++
Sbjct: 237 I--TPNVVTYNCLIKGYCDL-----------YQVEHAMELIAEMPFKGCPPDKVSYYTVM 283

Query: 295 DGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
              C+  RI+    L + M K   + P++VTYN+ +   S     D+A+E +R+ +    
Sbjct: 284 GFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGF 343

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            V     Y+ I+++ C  GR+  A++ + E++  G  P   TY  V + L
Sbjct: 344 QV-DKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGL 392



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 115/292 (39%), Gaps = 67/292 (22%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + + +M  +G    V T   T ++  L + G V EA     +M +  C+P+  +Y  ++N
Sbjct: 368 EIVNEMITKGCSPDVVT--YTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLN 425

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR------- 265
            LC+ GN  +AR ++   E   +   P+  TY++++    + G  +     +R       
Sbjct: 426 GLCQHGNSLEAREMMNTSEEDWW--TPNAITYSVVMHGLRREGKLSEACDVVREMLTKGF 483

Query: 266 -----------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
                            +++ EA       L +G   + V +  +I G C++  I+ AL 
Sbjct: 484 FPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALS 543

Query: 309 LFDDMN-----------------------------------KKGCIPNRVTYNSFIRYYS 333
           L DDM                                    KKG  P  VTY + I  Y 
Sbjct: 544 LLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYC 603

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            +  +++ I+++ KM + +      ++Y  +I  LC  G   EA D +  LV
Sbjct: 604 KMGRVEELIKLLGKMLSRS---KCRTAYNQVIEKLCNFGNP-EAADKVVGLV 651


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 130/273 (47%), Gaps = 19/273 (6%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  +   ++    ++G+V EAL   ++M+   C P+   YNV++N L   G   +A+ L+
Sbjct: 201 TVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELI 260

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           + M   G      VYTY  LI  YC+ G           +I EA+ L   ML +G VP V
Sbjct: 261 QDMLRLGLEV--SVYTYDPLIRGYCEKG-----------QIEEASRLGEEMLSRGAVPTV 307

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V YN ++ G CK  R+  A +L D M  K  +P+ V+YN+ I  Y+ +  I +A  +  +
Sbjct: 308 VTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAE 367

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDAL 403
           ++  +   P+  +Y  +I  LC  G +  A     E++  G  P  +T+    +  C   
Sbjct: 368 LRYRSLA-PSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMG 426

Query: 404 NAAEEPSLLDDGLRKRIR-DGIEYRFRQVMKVK 435
           N      L D+ L + ++ D   Y  R V ++K
Sbjct: 427 NLPMAKELFDEMLNRGLQPDRFAYITRIVGELK 459



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 150/319 (47%), Gaps = 37/319 (11%)

Query: 100 AAYRDPQKVTLGLNK-------ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLW 152
           AA  +P+ +   LN        A  F+ W ER   F  +E++   +  + AR   ++  +
Sbjct: 42  AAVAEPKLLVRVLNTVRNRPVVALRFFRWAERQTGFKRSEISYSVILDILARNGLMRSAY 101

Query: 153 DFLKDMS--RRGNG--ELVTTSSVT---------CLIKVLGEEGLVNEALATFYRMKQFR 199
             ++ +   +  NG  ++V++S V+          L+ +  ++ L+ + L  FY+M    
Sbjct: 102 CVMEKVVSVKMENGVIDVVSSSEVSMPSVKLILDLLLWIYVKKSLLEKCLLVFYKMVSKG 161

Query: 200 CRPDVYAYNVVINAL-CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
             PDV   N V+  L  R  N + AR +   M   G  CP  V TY  ++ S+CK GM  
Sbjct: 162 LLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGI-CPT-VVTYNTMLDSFCKKGM-- 217

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                    + EA  L   M   G  P+ V YN L++G   +  +E+A EL  DM + G 
Sbjct: 218 ---------VQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGL 268

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEA 377
             +  TY+  IR Y    +I++A  +  +M  L+ G VPT  +Y  I++ LC+ GRV +A
Sbjct: 269 EVSVYTYDPLIRGYCEKGQIEEASRLGEEM--LSRGAVPTVVTYNTIMYGLCKWGRVSDA 326

Query: 378 RDFLAELVDGGSVPREYTY 396
           R  L  +V+   +P   +Y
Sbjct: 327 RKLLDVMVNKNLMPDLVSY 345



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 29/246 (11%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + EA   F  ++     P V  YN +I+ LCR+G+ + A  L ++M   G    PDV+
Sbjct: 356 GNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHG--PDPDVF 413

Query: 243 TYTILISSYCKYG----------------MQTGCRKAIRRRIWE--------ANHLFRLM 278
           T+T  +  +CK G                +Q      I R + E        A  +   M
Sbjct: 414 TFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEM 473

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           L +GF PD++ YN  IDG  K   ++ A EL   M   G +P+ VTY S I  + +   +
Sbjct: 474 LARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHL 533

Query: 339 DKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            KA  +  +M  L+ G+ P+  +YT +IH+    GR+  A     E+ + G  P   TY 
Sbjct: 534 RKARALFLEM--LSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYN 591

Query: 398 LVCDAL 403
            + + L
Sbjct: 592 ALINGL 597



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 123/273 (45%), Gaps = 18/273 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + ++DM R G    V+  +   LI+   E+G + EA      M      P V  YN ++ 
Sbjct: 258 ELIQDMLRLGLE--VSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMY 315

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+ G  + AR LL+ M        PD+ +Y  LI  Y + G            I EA 
Sbjct: 316 GLCKWGRVSDARKLLDVMVNKNLM--PDLVSYNTLIYGYTRLG-----------NIGEAF 362

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            LF  + ++   P VV YN LIDG C+   ++ A+ L D+M K G  P+  T+ +F+R +
Sbjct: 363 LLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGF 422

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
             +  +  A E+  +M  LN G+ P   +Y   I    + G   +A     E++  G  P
Sbjct: 423 CKMGNLPMAKELFDEM--LNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPP 480

Query: 392 REYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
              TY +  D L+         + ++K + +G+
Sbjct: 481 DLITYNVFIDGLHKLGNLKEASELVKKMLYNGL 513



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 16/204 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  YNV I+ L ++GN  +A  L+++M   G    PD  TYT +I ++   G      
Sbjct: 480 PDLITYNVFIDGLHKLGNLKEASELVKKMLYNGL--VPDHVTYTSIIHAHLMAG------ 531

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + +A  LF  ML KG  P VV Y  LI       R++ A+  F +M++KG  PN
Sbjct: 532 -----HLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPN 586

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            +TYN+ I     V ++D+A     +MQ    G+ P   +YT +I+  C  G   EA   
Sbjct: 587 VITYNALINGLCKVRKMDQAYNFFAEMQ--AKGISPNKYTYTILINENCNLGHWQEALRL 644

Query: 381 LAELVDGGSVPREYTYKLVCDALN 404
             +++D    P   T++ +   LN
Sbjct: 645 YKDMLDREIQPDSCTHRSLLKHLN 668



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 13/173 (7%)

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           I  L + G + EA     +M      PD   Y  +I+A    G+  KAR L  +M   G 
Sbjct: 489 IDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGI 548

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
              P V TYT+LI SY           A+R R+  A   F  M  KG  P+V+ YN LI+
Sbjct: 549 F--PSVVTYTVLIHSY-----------AVRGRLKLAILHFFEMHEKGVHPNVITYNALIN 595

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           G CK  ++++A   F +M  KG  PN+ TY   I     +    +A+ + + M
Sbjct: 596 GLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDM 648



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 20/158 (12%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL+ +S+   G   +  + T LI      G +  A+  F+ M +    P+V  YN +IN 
Sbjct: 540 FLEMLSK---GIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALING 596

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EAN 272
           LC+V   ++A     +M+  G    P+ YTYTILI+  C  G             W EA 
Sbjct: 597 LCKVRKMDQAYNFFAEMQAKGI--SPNKYTYTILINENCNLGH------------WQEAL 642

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE--RALE 308
            L++ ML +   PD   +  L+    K Y++   R LE
Sbjct: 643 RLYKDMLDREIQPDSCTHRSLLKHLNKDYKLHVVRHLE 680



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 65/126 (51%), Gaps = 6/126 (4%)

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL--NHGV-PTSS 359
           +E+ L +F  M  KG +P+    N  +R   ++ + D  I++ R++ N+    G+ PT  
Sbjct: 147 LEKCLLVFYKMVSKGLLPDVKNCNRVLR---LLRDRDNNIDVAREVYNVMVECGICPTVV 203

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
           +Y  ++ + C+ G V EA   L ++   G  P + TY ++ + L+ + E     + ++  
Sbjct: 204 TYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDM 263

Query: 420 IRDGIE 425
           +R G+E
Sbjct: 264 LRLGLE 269


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 133/305 (43%), Gaps = 32/305 (10%)

Query: 126 FDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV 185
           F   HN  T   +   F   N +   +  L D+ + G     +T++ T LI+ L  EG +
Sbjct: 39  FGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQP--STATFTTLIRGLCVEGKI 96

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
            EAL  F +M     +PDV  Y  +IN LC+     +A  L   M   G    P+ +TY+
Sbjct: 97  GEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGI--SPNNFTYS 154

Query: 246 ILISSYCKYG---------------------------MQTGCRKAIRRRIWEANHLFRLM 278
            LI   C  G                           +   C++ + + + +A  LF  M
Sbjct: 155 SLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEM 214

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
             +G +PD V YN LI G C   R+  A+ LF +M   G IP+ VTY     Y    + +
Sbjct: 215 SQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRL 274

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
            +A+ +++ ++  N   P    Y+ ++  +C AG +  ARD  ++L   G  P   TY +
Sbjct: 275 AEAMVLLKVIEGTNLD-PDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTI 333

Query: 399 VCDAL 403
           + + L
Sbjct: 334 MINGL 338



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 114/258 (44%), Gaps = 56/258 (21%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           +  L+ + +M  F    + Y  N++IN+ C +     A  +L  +   G++  P   T+T
Sbjct: 27  STVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQ--PSTATFT 84

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            LI   C  G           +I EA  LF  M  +GF PDV+ Y  LI+G CK  ++  
Sbjct: 85  TLIRGLCVEG-----------KIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTE 133

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIR--------------YYSVVNE-------------- 337
           AL LF DM  KG  PN  TY+S I               +Y++++               
Sbjct: 134 ALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVD 193

Query: 338 ----------IDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
                     +DKA+ +  +M  Q L   +P + +Y  +IH LC  GR+ +A     E+V
Sbjct: 194 ALCKEGMIQIMDKAMGLFEEMSQQGL---IPDTVTYNTLIHGLCHVGRLRDAIALFHEMV 250

Query: 386 DGGSVPREYTYKLVCDAL 403
             G +P   TY+++ D L
Sbjct: 251 VYGQIPDLVTYRILFDYL 268



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 19/177 (10%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
             ++MS++G   +  T +   LI  L   G + +A+A F+ M  +   PD+  Y ++ + 
Sbjct: 210 LFEEMSQQG--LIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDY 267

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+     +A  LL+ +E  G    PD++ Y+I++   C+ G            +  A  
Sbjct: 268 LCKNHRLAEAMVLLKVIE--GTNLDPDIHIYSIVMDGMCRAG-----------ELEAARD 314

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           LF  +  KG  PDV  Y  +I+G C+   +  A +LF +M++     +  +Y++F R
Sbjct: 315 LFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDEN----DIESYSTFSR 367


>gi|414591646|tpg|DAA42217.1| TPA: hypothetical protein ZEAMMB73_097907 [Zea mays]
          Length = 476

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 13/229 (5%)

Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+K   E    +EAL    +R  +  C PDV +YN+++ +LC  G   +A  LL  M   
Sbjct: 152 LLKGFCEAKRTDEALDILLHRTPELGCVPDVSSYNILLKSLCNQGKSGQADDLLRMMAEG 211

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C PDV  YT +I  + K G            + +A  LF+ M+ +G  PD V Y+ +
Sbjct: 212 GAVCSPDVVAYTTVIDGFFKEG-----------DVNKACDLFKEMVQRGIPPDFVTYSSV 260

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +   CK   +++A      M  KG +PN  TYN+ I  YS   +  +A+ + ++M+  N 
Sbjct: 261 VHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHNI 320

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +   +  T ++ +LC+ G++ EARD    +   G  P  ++Y ++ + 
Sbjct: 321 LLDVVNLNT-LMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNG 368



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 15/183 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D L+ M+  G        + T +I    +EG VN+A   F  M Q    PD   Y+ V++
Sbjct: 203 DLLRMMAEGGAVCSPDVVAYTTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVH 262

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EA 271
           ALC+    +KA   L QM   G    P+ +TY  LI  Y   G             W EA
Sbjct: 263 ALCKARAMDKAEAFLRQMVNKGVL--PNNWTYNNLIYGYSSTGQ------------WKEA 308

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +F+ M     + DVV  N L+   CK  +I+ A ++FD M  KG  PN  +Y   +  
Sbjct: 309 VRVFKEMRRHNILLDVVNLNTLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNG 368

Query: 332 YSV 334
           Y+ 
Sbjct: 369 YAT 371



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 13/188 (6%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P  YTY IL+           C +A R  +  A   F  +L  G   D++  N L+ G C
Sbjct: 109 PTSYTYAILMDC---------CTRAHRPELALA--FFGQLLRTGLRVDIIIANHLLKGFC 157

Query: 299 KTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH-GVP 356
           +  R + AL+ L     + GC+P+  +YN  ++      +  +A +++R M        P
Sbjct: 158 EAKRTDEALDILLHRTPELGCVPDVSSYNILLKSLCNQGKSGQADDLLRMMAEGGAVCSP 217

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              +YT +I    + G V +A D   E+V  G  P   TY  V  AL  A      +  L
Sbjct: 218 DVVAYTTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFL 277

Query: 417 RKRIRDGI 424
           R+ +  G+
Sbjct: 278 RQMVNKGV 285


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G +NE       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M  KG  P++ TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWGLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + N  FRL   M   G  PDV  Y+ LI+G CK  +++ A  LFD+M  KG +P
Sbjct: 186 ------DLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E++  G  P ++TY  + D 
Sbjct: 297 DLIDEMIMKGLKPDKFTYTTLIDG 320



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG   TT     LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANVLFDEMLDKGLVPNGVTFTT-----LIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G +  PD +TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK--PDKFTYTTLIDGNCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQ 408


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 117/249 (46%), Gaps = 15/249 (6%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           A GN  K L +  K M+  G G  + T ++  ++  L      ++A++ F  MK      
Sbjct: 93  AAGNWKKAL-ELCKKMTENGVGPDLVTHNI--VLSALKNGAQYSKAISYFEIMKGANVTS 149

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D +  N++I+ L ++G   +A  L   M     +CPPDV TYT ++ SYC YG    C+ 
Sbjct: 150 DTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKA 209

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                      +F LM+ +G  P++VAYN L+           AL +F+ + K G  P+ 
Sbjct: 210 -----------IFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDI 258

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           V+Y S +  Y    + +KA E+  KM+  N   P   SY  +I A   AG + EA   L 
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKK-NSCKPNKVSYNALIDAYGSAGMLKEAVGLLH 317

Query: 383 ELVDGGSVP 391
           E+   G  P
Sbjct: 318 EMEKDGIQP 326



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 113/246 (45%), Gaps = 19/246 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           ++ +  N K ++D +     + N  +V  +S   L+      G+  EALA F  +K+   
Sbjct: 200 IYGQVENCKAIFDLMVAEGVKPN--IVAYNS---LLGAYASRGMHREALAIFNLIKKNGL 254

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           RPD+ +Y  ++NA  R     KAR +  +M+     C P+  +Y  LI +Y   GM    
Sbjct: 255 RPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNS--CKPNKVSYNALIDAYGSAGM---- 308

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  + EA  L   M   G  PDVV+ + L+  C +  +I R   + +    +G   
Sbjct: 309 -------LKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDL 361

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N V YNS I+ Y    + +KA+E+   M+  N   P + +Y  +I    + G+  E+  F
Sbjct: 362 NTVAYNSGIKSYLSFGDYEKALELYTSMRESNVK-PDAVTYNILISGSSKLGKYTESLRF 420

Query: 381 LAELVD 386
             ++VD
Sbjct: 421 FEDMVD 426



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 14/229 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I++      V++A   F+ M+++RC+PD   YN +I+A  R G +  A  ++E M    
Sbjct: 17  MIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAA 76

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
              PP   TY  +I++ C  G     +KA+         L + M   G  PD+V +N ++
Sbjct: 77  I--PPTRTTYNNVINA-C--GAAGNWKKAL--------ELCKKMTENGVGPDLVTHNIVL 123

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
                  +  +A+  F+ M       +  T N  I     + +  +AIE+   M+     
Sbjct: 124 SALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTK 183

Query: 355 VPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            P    +YT I+H+ C  G+V   +     +V  G  P    Y  +  A
Sbjct: 184 CPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGA 232



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 20/222 (9%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG ++EA +TF  MK+  C PDV  Y  +I A    G + +A  L ++ME+ G   PPD
Sbjct: 433 KEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGI--PPD 490

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF--KGFVP-DVVAYNCLIDGC 297
               + L+ ++ K G              E   + +LM F  K  +P +  +Y  +I  C
Sbjct: 491 AIICSSLMEAFNKGG--------------EPERVLQLMEFMKKKSIPLNQKSYFEIIASC 536

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
                 + A E+ + ++      +  T N  + +     + +  +++  KM      V  
Sbjct: 537 TMIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENMMKLFYKMVTSCSTVGL 596

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            S+Y  ++  L   G+  +  + L  + D G  P  Y ++ V
Sbjct: 597 -STYAVVLRNLLVVGKWRKYIEVLQWMEDSGVHPTLYMFQNV 637



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 4/120 (3%)

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  +I    +  ++++A  LF +M +  C P+   YNS I  +S   +   AI +M  M 
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDM- 72

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL-NAAE 407
            L   + PT ++Y  +I+A   AG   +A +   ++ + G  P   T+ +V  AL N A+
Sbjct: 73  -LRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +     R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWSLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M   G +P
Sbjct: 186 ------DLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDG 320



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG +    + T LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANELFDEMID-----NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK--PDKITYTTLIDGNCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 14/199 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 191 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--VPNGVTFTTLIDGHCKNG----- 243

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +  +PD++ YN LI G CK   + +A  L D+M+ KG  P
Sbjct: 244 ------RVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKP 297

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           ++ TY + I       ++D A E  ++M   N  +    +YT II  LC+ GR ++A   
Sbjct: 298 DKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLD-DVAYTAIISGLCQEGRPVDAEKM 356

Query: 381 LAELVDGGSVPREYTYKLV 399
           L E++  G  P   TY ++
Sbjct: 357 LREMLSVGLKPDTGTYTMI 375



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 106/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 124 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 173

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 174 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP 227

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A 
Sbjct: 228 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL---LPDLITYNTLIYGLCKKGDLNQAH 284

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
             + E+   G  P ++TY  + D 
Sbjct: 285 GLIDEMSMKGLKPDKFTYTTLIDG 308



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 14/197 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+ N+A  L+++M
Sbjct: 231 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEM 290

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G +  PD +TYT LI   CK G      +  +R I E   L           D VAY
Sbjct: 291 SMKGLK--PDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRL-----------DDVAY 337

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             +I G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ 
Sbjct: 338 TAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 397

Query: 351 LNHGVPTSSSYTPIIHA 367
             H VP+  +Y  +++ 
Sbjct: 398 NGH-VPSVXTYNVLMNG 413



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 30/241 (12%)

Query: 189 LATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           L ++  M  F C   ++  A +++   + R G  + +      +E  G +   D+Y ++ 
Sbjct: 1   LHSYCTMIHFLCTHQMFSEAKSLIQXVVSRKGKGSASAVFAAILETKGTQ-RSDIYVFSG 59

Query: 247 LISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GFVPDVVA-- 289
           LI++Y + G       C +  R  ++W           HL +L  FK   GF  +++   
Sbjct: 60  LITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECG 119

Query: 290 -------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
                  +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  + ++D+  
Sbjct: 120 YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 179

Query: 343 EMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
            +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G VP   T+  + D
Sbjct: 180 RLKSAM--LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLID 237

Query: 402 A 402
            
Sbjct: 238 G 238


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 108/222 (48%), Gaps = 16/222 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G +  A A   RMK      DV  YN ++  LCR G  + AR +++ M+  G    P+V 
Sbjct: 188 GDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVE--PNVV 245

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TYT+ I  YC+           R  + +A  L+  M+ KG +PDVV  + L+ G CK  R
Sbjct: 246 TYTMFIVEYCR-----------RNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGR 294

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSY 361
              A  LF +M K G  PN VTY   I   +     ++++ ++ ++  ++ GV      Y
Sbjct: 295 FSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEV--VSRGVVMDLIMY 352

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           T ++  LC+ G++ EA+D     +     P   TY ++ DAL
Sbjct: 353 TALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDAL 394



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 122/291 (41%), Gaps = 61/291 (20%)

Query: 159 SRRGN------GELVTTSSV------TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           ++RGN      GE+V+   V      T L+  L +EG ++EA   F         P+   
Sbjct: 327 AQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVT 386

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           Y V+I+ALC+ GN + A  +L +ME       P+V T++ +I+   K G           
Sbjct: 387 YTVLIDALCKAGNVDGAEQVLSEMEEKSI--SPNVVTFSSIINGLVKRGW---------- 434

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGC-----------------C----------- 298
            + +A    R M  +G  P+VV Y  +IDG                  C           
Sbjct: 435 -VGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVD 493

Query: 299 -------KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
                  K  +IE+A  LF +MN++G + + V Y + I        +  A ++ +++   
Sbjct: 494 SLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEK 553

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           N  +P +  Y   I+ LC  G+  EA  FL E+   G  P + TY  +  A
Sbjct: 554 NL-LPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAA 603



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 110/232 (47%), Gaps = 20/232 (8%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           L++MS RG    +   ++T    +LG  + G ++ A +T+ +M      P+V  +N ++ 
Sbjct: 722 LEEMSGRG----IAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLG 777

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            L   G   ++  +L +M+  G    P   TY IL++ Y   G Q+   +A+R       
Sbjct: 778 GLESAGRIGESDMVLNEMKKRGIE--PSNLTYDILVTGY---GKQSNKVEAVR------- 825

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L+  M+ KGF+P V  YN LI    K   + +A ELF++M  +G +P   TY+  +  +
Sbjct: 826 -LYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGW 884

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           S +    +  + ++ M+      P+  + + I  A  + G   EAR  L  L
Sbjct: 885 SKLRNGTEVRKFLKDMKEKGFS-PSKGTLSSISRAFSKPGMSWEARRLLKNL 935



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 110/249 (44%), Gaps = 22/249 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           FL++M   G    +    VT   +I     EG   +AL     MK+   +P++  Y+ +I
Sbjct: 581 FLEEMQSTG----LKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLI 636

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             L   G   KA++LL +M   GF   P   T+  ++ + C  G          RR    
Sbjct: 637 VGLFEAGAVEKAKYLLNEMSSSGF--SPTSLTHRRVLQA-CSQG----------RRSDLI 683

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +   M+  G   D+  YN L+   C      +A+ + ++M+ +G  P+ +T+N+ I  
Sbjct: 684 LEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILG 743

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
           +     +D A     +M  L HG+ P  +++  ++  L  AGR+ E+   L E+   G  
Sbjct: 744 HFKSGHLDNAFSTYDQM--LYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIE 801

Query: 391 PREYTYKLV 399
           P   TY ++
Sbjct: 802 PSNLTYDIL 810



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 106/229 (46%), Gaps = 18/229 (7%)

Query: 140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           + + R N V   +   ++M R+G   L    +++ L+  L ++G  +EA A F  M++  
Sbjct: 252 VEYCRRNAVDDAFSLYEEMVRKG--VLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIG 309

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             P+   Y ++I+ L +    N++  LL ++   G     D+  YT L+   CK G    
Sbjct: 310 AAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVM--DLIMYTALMDWLCKEG---- 363

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  +I EA  +FR  L     P+ V Y  LID  CK   ++ A ++  +M +K   
Sbjct: 364 -------KIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSIS 416

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
           PN VT++S I        + KA + MR+M+    G+ P   +Y  +I  
Sbjct: 417 PNVVTFSSIINGLVKRGWVGKATDYMREMK--ERGIDPNVVTYGTVIDG 463



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 29/244 (11%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D+  YN ++  LC  G   KA  +LE+M   G    PD  T+  LI  + K G       
Sbjct: 698 DITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGI--APDTITFNALILGHFKSG------- 748

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                +  A   +  ML+ G  P+V  +N L+ G     RI  +  + ++M K+G  P+ 
Sbjct: 749 ----HLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSN 804

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           +TY+  +  Y   +   +A+ +  +M      +P  S+Y  +I    + G + +A++   
Sbjct: 805 LTYDILVTGYGKQSNKVEAVRLYCEMVGKGF-LPKVSTYNALISDFSKVGMMSQAKELFN 863

Query: 383 ELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYR-FRQVMKVKPIMKHK 441
           E+ + G +P   TY ++    +              ++R+G E R F + MK K     K
Sbjct: 864 EMQNRGVLPTSCTYDILVSGWS--------------KLRNGTEVRKFLKDMKEKGFSPSK 909

Query: 442 ELLK 445
             L 
Sbjct: 910 GTLS 913



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 134/326 (41%), Gaps = 66/326 (20%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           +G  D  KDM R    +  T + VT   LI  L + G V+ A      M++    P+V  
Sbjct: 362 EGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVT 421

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY-TILISSYCKYGMQT------- 258
           ++ +IN L + G   KA   + +M+  G    P+V TY T++  S+   G +        
Sbjct: 422 FSSIINGLVKRGWVGKATDYMREMKERGI--DPNVVTYGTVIDGSFKCLGQEAALDVYHE 479

Query: 259 ------------------GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
                             G +K    +I +A  LFR M  +G + D V Y  LIDG  KT
Sbjct: 480 MLCEGVEVNKFIVDSLVNGLKK--NGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKT 537

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN---------- 350
             +  A ++  ++ +K  +P+ V YN FI    ++ +  +A   + +MQ+          
Sbjct: 538 GNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTY 597

Query: 351 ------------------LNHGVPTSS------SYTPIIHALCEAGRVLEARDFLAELVD 386
                             L +G+  SS      +Y+ +I  L EAG V +A+  L E+  
Sbjct: 598 NTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSS 657

Query: 387 GGSVPREYTYKLVCDALNAAEEPSLL 412
            G  P   T++ V  A +      L+
Sbjct: 658 SGFSPTSLTHRRVLQACSQGRRSDLI 683



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 92/243 (37%), Gaps = 54/243 (22%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D  +YNVV++     G       L E  +      P D  T   ++   C+ G       
Sbjct: 102 DTVSYNVVMSGFSEQGGLAPEALLAEMCKRG---VPFDAVTVNTVLVGLCRDG------- 151

Query: 263 AIRRRIWEANHLFRLMLFKGFVP--DVVAYNCLIDGCCKTYRIERAL------------- 307
               R+  A  L  +M+  G +   DVV +N L+DG CK   +E A              
Sbjct: 152 ----RVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGV 207

Query: 308 ----------------------ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
                                 ++ D M + G  PN VTY  FI  Y   N +D A  + 
Sbjct: 208 DVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLY 267

Query: 346 RKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
            +M  +  GV P   + + ++  LC+ GR  EA     E+   G+ P   TY ++ D L 
Sbjct: 268 EEM--VRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLA 325

Query: 405 AAE 407
            A+
Sbjct: 326 KAQ 328



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 19/214 (8%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           V  L+  L + G + +A A F  M +     D   Y  +I+ L + GN   A F + Q E
Sbjct: 492 VDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNL-PAAFKVGQ-E 549

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
           L      PD   Y + I+  C  G           +  EA      M   G  PD V YN
Sbjct: 550 LTEKNLLPDAVVYNVFINCLCMLG-----------KSKEAESFLEEMQSTGLKPDQVTYN 598

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            +I    +  +  +AL+L + M +    PN +TY++ I        ++KA  ++ +M + 
Sbjct: 599 TMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSS 658

Query: 352 NHGVPTSSSYTPIIHALCEAGR----VLEARDFL 381
               PTS ++  ++ A C  GR    +LE  +++
Sbjct: 659 GFS-PTSLTHRRVLQA-CSQGRRSDLILEIHEWM 690


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 125/258 (48%), Gaps = 19/258 (7%)

Query: 175 LIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+K   E    +EAL    +R  +  C PDV++YN+++ +LC  G   +A  LL  M   
Sbjct: 118 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEG 177

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C PDV  Y  +I  + K G            + +A  LF+ M+ +G  PD+V YN +
Sbjct: 178 GTVCSPDVVAYNTVIDGFFKEG-----------DVNKACDLFKEMVQRGIPPDLVTYNSV 226

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +   CK   +++A      M  K  +PN  TYN+ I  YS   +  +A+ + ++M+   H
Sbjct: 227 VHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR--H 284

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
            + P   + + ++ +LC+ G++ EARD    +   G  P  ++Y ++ +    A +  L+
Sbjct: 285 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGY--ATKGCLV 342

Query: 413 D--DGLRKRIRDGIEYRF 428
           D  D     + DGI   F
Sbjct: 343 DMTDLFDLMLGDGIAPDF 360



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 114/250 (45%), Gaps = 47/250 (18%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---------- 230
           +EG VN+A   F  M Q    PD+  YN V++ALC+    +KA   L QM          
Sbjct: 197 KEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNW 256

Query: 231 -----------------------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
                                  E+      PDV T ++L+ S CKYG           +
Sbjct: 257 TYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYG-----------K 305

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           I EA  +F  M  KG  PDV +YN +++G      +    +LFD M   G  P+  T+N 
Sbjct: 306 IKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNV 365

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            I+ Y+    +DKA+ +  +M+  +HGV P   +Y  +I ALC  G++ +A +   +++D
Sbjct: 366 QIKAYANCGMLDKAMIIFNEMR--DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMID 423

Query: 387 GGSVPREYTY 396
            G  P +Y Y
Sbjct: 424 QGVAPDKYAY 433



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 19/192 (9%)

Query: 145 GNNVKGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           G +  G W       K+M R      V T S+  L+  L + G + EA   F  M     
Sbjct: 264 GYSSTGQWKEAVRVFKEMRRHSILPDVVTLSM--LMGSLCKYGKIKEARDVFDTMAMKGQ 321

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PDV++YN+++N     G       L + M   G    PD YT+ + I +Y   GM    
Sbjct: 322 NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGI--APDFYTFNVQIKAYANCGM---- 375

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  + +A  +F  M   G  PDVV Y  +I   C+  +++ A+E F+ M  +G  P
Sbjct: 376 -------LDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAP 428

Query: 321 NRVTYNSFIRYY 332
           ++  YN  I+ +
Sbjct: 429 DKYAYNCLIQGF 440



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 15/151 (9%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           +K   D    M+ +G    V + ++  ++     +G + +    F  M      PD Y +
Sbjct: 306 IKEARDVFDTMAMKGQNPDVFSYNI--MLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTF 363

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           NV I A    G  +KA  +  +M   G +  PDV TY  +I++ C+ G           +
Sbjct: 364 NVQIKAYANCGMLDKAMIIFNEMRDHGVK--PDVVTYRTVIAALCRIG-----------K 410

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           + +A   F  M+ +G  PD  AYNCLI G C
Sbjct: 411 MDDAMEKFNQMIDQGVAPDKYAYNCLIQGFC 441



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           IK     G++++A+  F  M+    +PDV  Y  VI ALCR+G  + A     QM   G 
Sbjct: 367 IKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGV 426

Query: 236 RCPPDVYTYTILISSYCKYGM 256
              PD Y Y  LI  +C +G+
Sbjct: 427 --APDKYAYNCLIQGFCTHGI 445



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 13/184 (7%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P  YTY IL+           C +A R  +  A   F  +L  G   D +  + L+ G C
Sbjct: 75  PTSYTYAILMDC---------CTRAHRPELALA--FFGQLLRTGLRVDAIIASHLLKGFC 123

Query: 299 KTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-QNLNHGVP 356
           +  R + AL+ L     + GC+P+  +YN  ++      +  +A  ++R M +      P
Sbjct: 124 EAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSP 183

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              +Y  +I    + G V +A D   E+V  G  P   TY  V  AL  A      +  L
Sbjct: 184 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 243

Query: 417 RKRI 420
           R+ +
Sbjct: 244 RQMV 247


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 125/286 (43%), Gaps = 41/286 (14%)

Query: 157 DMSRRGNGELV------TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           +++ R  GE+V      T ++    +  L  EG   EA A    M +    PD + YN++
Sbjct: 236 EVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNIL 295

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM--------QTGCRK 262
           IN  C+ G   KA  + E M   G R    V TYT LI +    GM            R+
Sbjct: 296 INGYCKEGKEKKAMKMFEVMVGKGIRA--TVVTYTSLIHALSMKGMVQETDRLFNDAVRR 353

Query: 263 AIRRRIWEANHLFRL----------------MLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
            IR  ++  N L                   M  K   PD V YN L+ G C   R++ A
Sbjct: 354 GIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEA 413

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI----EMMRKMQNLNHGVPTSSSYT 362
             L ++M K+G  P+ V+YN+ I  YS+  +I  A+    EMM K  N     PT  +Y 
Sbjct: 414 RGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFN-----PTLLTYN 468

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            +I  LC  G+  +A D + E+V  G  P + TY  + + L   +E
Sbjct: 469 AMIKGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGLTTEDE 514



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 22/218 (10%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A   F  + + R       +N+++  LC  G   +A  LL QM        P+  TY  +
Sbjct: 100 AFVLFADIFRLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQMP------SPNAVTYNTV 153

Query: 248 ISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           I+ +C  G +Q G    I R + E           G  PD   Y  +I G CK  ++E A
Sbjct: 154 IAGFCARGRVQAGIE--IMREMRERG---------GIAPDKYTYATVISGWCKVGKVEDA 202

Query: 307 LELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP-TSSSYTPI 364
            ++FD+M  +G + PN V YN+ I  Y     ++ A+    +M  ++ GV  T ++Y   
Sbjct: 203 TKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEM--VDRGVSMTVATYNLF 260

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +H L   GR  EA   + E+ + G  P  +TY ++ + 
Sbjct: 261 VHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILING 298



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 110/260 (42%), Gaps = 22/260 (8%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           ++T++   +++ L   G    AL    +M      P+   YN VI   C  G       +
Sbjct: 114 LSTTTFNIMLRHLCTAGKPVRALELLRQMPS----PNAVTYNTVIAGFCARGRVQAGIEI 169

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-P 285
           + +M   G    PD YTY  +IS +CK G           ++ +A  +F  ML +G V P
Sbjct: 170 MREMRERG-GIAPDKYTYATVISGWCKVG-----------KVEDATKVFDEMLTEGKVEP 217

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           + V YN LI G C    +E AL    +M  +G      TYN F+    +     +A  ++
Sbjct: 218 NAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALV 277

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN- 404
            +M       P + +Y  +I+  C+ G+  +A      +V  G      TY  +  AL+ 
Sbjct: 278 EEMGEKGL-APDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSM 336

Query: 405 ---AAEEPSLLDDGLRKRIR 421
                E   L +D +R+ IR
Sbjct: 337 KGMVQETDRLFNDAVRRGIR 356



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 20/185 (10%)

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R P    T+ I++   C  G      K +R     A  L R M      P+ V YN +I
Sbjct: 110 LRLPLSTTTFNIMLRHLCTAG------KPVR-----ALELLRQMP----SPNAVTYNTVI 154

Query: 295 DGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
            G C   R++  +E+  +M ++G I P++ TY + I  +  V +++ A ++  +M     
Sbjct: 155 AGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGK 214

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEP 409
             P +  Y  +I   C+ G +  A  +  E+VD G      TY L    L     AAE  
Sbjct: 215 VEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAH 274

Query: 410 SLLDD 414
           +L+++
Sbjct: 275 ALVEE 279


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 17/243 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    + G V+ A   F  M++ +  PD   Y  VI  LC+ G   +A  L  +M  
Sbjct: 262 TTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVC 321

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              R  PD  TYT LI  YCK G           ++ EA  L   ML  G  P++V Y  
Sbjct: 322 K--RLEPDEVTYTALIDGYCKEG-----------KMKEAFSLHNQMLQMGLTPNIVTYTA 368

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L DG CK   ++ A EL  +M +KG   N  TYNS +        ID+A+++M+ M+   
Sbjct: 369 LADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAG 428

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
              P + +YT ++ A C++  ++ A + L +++D    P   T+ ++   +N      +L
Sbjct: 429 FH-PDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVL---MNGFCMSGML 484

Query: 413 DDG 415
           +DG
Sbjct: 485 EDG 487



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 14/218 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L   L + G V+ A    + M +     ++Y YN ++N LC+ GN ++A  L++ M
Sbjct: 365 TYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDM 424

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E+ GF   PD  TYT L+ +YCK            R +  A+ L R ML +   P VV +
Sbjct: 425 EVAGFH--PDAVTYTTLMDAYCK-----------SREMVRAHELLRQMLDRELQPTVVTF 471

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N L++G C +  +E   +L   M +KG +PN  TYNS I+ Y + N +    E+ R M  
Sbjct: 472 NVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGM-C 530

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
               VP  ++Y  +I   C+A  + EA     ++V  G
Sbjct: 531 AKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG 568



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 18/236 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I +L + G V EA      M      PD   Y  +I+  C++GN + A  L ++M+   
Sbjct: 229 VILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQ--K 286

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PD  TYT +I   C+ G           R+ EA+ LF  M+ K   PD V Y  LI
Sbjct: 287 RKISPDFITYTAVICGLCQTG-----------RVMEADKLFHEMVCKRLEPDEVTYTALI 335

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLN 352
           DG CK  +++ A  L + M + G  PN VTY +         E+D A E++ +M  + L 
Sbjct: 336 DGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLE 395

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
             + T   Y  +++ LC+AG + +A   + ++   G  P   TY  + DA   + E
Sbjct: 396 LNIYT---YNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 448



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 14/200 (7%)

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           L+E+M++ G +  P+ YTY  +I   CK G           ++ EA  + R M+ +G  P
Sbjct: 210 LIEEMQIKGLK--PNPYTYNGVILLLCKTG-----------KVAEAERVLREMISEGIAP 256

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           D V Y  LIDG CK   +  A  LFD+M K+   P+ +TY + I        + +A ++ 
Sbjct: 257 DGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLF 316

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
            +M       P   +YT +I   C+ G++ EA     +++  G  P   TY  + D L  
Sbjct: 317 HEMV-CKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCK 375

Query: 406 AEEPSLLDDGLRKRIRDGIE 425
             E    ++ L +  R G+E
Sbjct: 376 CGEVDTANELLHEMCRKGLE 395



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 65/152 (42%), Gaps = 26/152 (17%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC-KYGMQTG 259
           +P V  +NV++N  C  G       LL+ M   G    P+  TY  LI  YC +  M+  
Sbjct: 465 QPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIM--PNATTYNSLIKQYCIRNNMRAT 522

Query: 260 -------CRKAI----------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                  C K +                 R + EA  L R M+ KGF   V +YN LI G
Sbjct: 523 TEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKG 582

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
             K  +   A ELF+ M ++G + +R  YN F
Sbjct: 583 FYKRKKFLEARELFEQMRREGLVADREIYNIF 614



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 13/126 (10%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN++I   C+  N  +A FL   M   GF     V +Y  LI  + K        
Sbjct: 536 PDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLT--VSSYNALIKGFYK-------- 585

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              R++  EA  LF  M  +G V D   YN   D      ++E  LEL D+  +K  + +
Sbjct: 586 ---RKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGD 642

Query: 322 RVTYNS 327
             T N+
Sbjct: 643 IQTKNT 648



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 15/169 (8%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLI-------DGCCKTYRIERALELFDDMNKKGCIPNRV 323
           A  LF  ML  G +  V + N  I       DG     + E  L+L ++M  KG  PN  
Sbjct: 165 ARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPY 224

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           TYN  I       ++ +A  ++R+M  ++ G+ P    YT +I   C+ G V  A     
Sbjct: 225 TYNGVILLLCKTGKVAEAERVLREM--ISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFD 282

Query: 383 ELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIR-DGIEY 426
           E+      P   TY  V    C      E   L  + + KR+  D + Y
Sbjct: 283 EMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTY 331


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 104/198 (52%), Gaps = 14/198 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G      
Sbjct: 206 PDVYTYSVLINGLCKESKMDGANELFDEMLVKGL--VPNXVTFTTLIDGHCKNG------ 257

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+  A  +++ ML +  +PD++ YN LI G CK   +++A +L D+M+ KG  P+
Sbjct: 258 -----RVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPD 312

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           + TY + I       ++D A    ++M   N  +    +YT +I  LC+ GR ++A   L
Sbjct: 313 KFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLD-DVAYTALISGLCQEGRSVDAEKML 371

Query: 382 AELVDGGSVPREYTYKLV 399
            E++  G  P   TY ++
Sbjct: 372 REMLSVGLXPDAGTYTMI 389



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 107/204 (52%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 138 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 187

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 188 ------DLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVP 241

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A 
Sbjct: 242 NXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL---LPDLITYNTLIYGLCKKGDLKQAH 298

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P ++TY  + D 
Sbjct: 299 DLIDEMSXKGLKPDKFTYTTLIDG 322



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 15/179 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 245 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 304

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
              G +  PD +TYT LI   CK G + T      R+R+ + N   RL        D VA
Sbjct: 305 SXKGLK--PDKFTYTTLIDGCCKEGDLDTAFXH--RKRMIQEN--IRL--------DDVA 350

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           Y  LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++M
Sbjct: 351 YTALISGLCQEGRSVDAEKMLREMLSVGLXPDAGTYTMIINEFCKKGDVWKGSKLLKEM 409



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 45/244 (18%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQ-----------------MELPGFRCPPDVYT 243
           R  +++Y  +I+ LC     ++A+ L+E                  +E  G +   D+Y 
Sbjct: 12  RHTLHSYCTMIHFLCTHQMLSEAKSLIEVVVSRKGKGSASAVFAAVLETKGNQ-RSDIYV 70

Query: 244 YTILISSYCKYGMQTGC----RKAIRRRIWEA--------NHLFRLMLFK---GFVPDVV 288
           ++ LI++Y + G         R     ++W           HL +L  FK   GF  +++
Sbjct: 71  FSGLITAYLESGFLRDAIECYRLTXEHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 130

Query: 289 A---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
                     +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  + ++D
Sbjct: 131 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 190

Query: 340 KAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           +   +   M  L  G  P   +Y+ +I+ LC+  ++  A +   E++  G VP   T+  
Sbjct: 191 EGFRLKSAM--LASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTT 248

Query: 399 VCDA 402
           + D 
Sbjct: 249 LIDG 252


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 13/227 (5%)

Query: 171 SVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           + T L++ L  E   ++A+     RM +  C PDV++Y  ++  LC      +A  L+  
Sbjct: 181 TFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHM 240

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M   G  CPP+V +YT +I  + K G            + +A  LF  ML  G  P+VV 
Sbjct: 241 MAEDGDNCPPNVVSYTTVIHGFFKEG-----------DVGKAYTLFCKMLDHGIPPNVVT 289

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
            N +IDG CK   +++A  +   M  +  +PN  TYNS I  Y    +  +A+ ++++M 
Sbjct: 290 CNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMS 349

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             +   P   +Y+ +I  LC++G   EAR+    ++  G  P   TY
Sbjct: 350 R-DGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTY 395



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 131/277 (47%), Gaps = 26/277 (9%)

Query: 149 KGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
            G W      LK+MSR G    V T S+  LI  L + GL  EA   F  M Q   +P+ 
Sbjct: 335 SGQWTEAVRILKEMSRDGQRPNVVTYSM--LIDCLCKSGLHAEAREIFNSMIQSGQKPNA 392

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             Y  +++     GN      + + M   G R  P  + + I I +YCK G         
Sbjct: 393 STYGSLLHGYATEGNLVDMNNVKDLMVQNGMR--PGRHVFNIEIYAYCKCG--------- 441

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             R+ EA+  F  M  +GF+PD+VAY  +IDG CK  R++ A+  F  M   G  P+ +T
Sbjct: 442 --RLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIIT 499

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAE 383
           +N+ I  +++  + +KA E+  +M  ++ G+P + +++  +I  L + G+V EAR     
Sbjct: 500 FNTLIHGFALHGKWEKAEELFYEM--MDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDL 557

Query: 384 LVDGGSVPREYTYKLVCD----ALNAAEEPSLLDDGL 416
           +   G+ P   +Y  +      A    E   LLDD L
Sbjct: 558 MPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDML 594



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 120/277 (43%), Gaps = 22/277 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + +  M+  G+       S T +I    +EG V +A   F +M      P+V   N VI+
Sbjct: 236 ELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVID 295

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+V   +KA  +L+QM        P+  TY  LI  Y   G  T           EA 
Sbjct: 296 GLCKVQAMDKAEAVLQQMIDEHIM--PNCTTYNSLIHGYLSSGQWT-----------EAV 342

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            + + M   G  P+VV Y+ LID  CK+     A E+F+ M + G  PN  TY S +  Y
Sbjct: 343 RILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGY 402

Query: 333 SVV-NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           +   N +D  +  ++ +   N   P    +   I+A C+ GR+ EA     ++   G +P
Sbjct: 403 ATEGNLVD--MNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMP 460

Query: 392 REYTYKLVCDALNAAEEPSLLDDGLRK---RIRDGIE 425
               Y  V D L    +   LDD + +    I DG+ 
Sbjct: 461 DIVAYTTVIDGLC---KIGRLDDAMSRFCQMIDDGLS 494



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 94/227 (41%), Gaps = 43/227 (18%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++EA  TF +M+Q    PD+ AY  VI+ LC++G  + A     QM   G    PD+ 
Sbjct: 441 GRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLS--PDII 498

Query: 243 TYTILISSYCKYG------------MQTGCRKAIRR------------RIWEANHLFRLM 278
           T+  LI  +  +G            M  G    +              ++ EA  LF LM
Sbjct: 499 TFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLM 558

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
              G  P+VV+YN +I G      +   ++L DDM   G  P  VT+N+          +
Sbjct: 559 PRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTL---------L 609

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           D  + M  K        P   +   +I + CE GR+ +      E++
Sbjct: 610 DGMVSMGLK--------PDVVTCKTLIDSCCEDGRIEDILTLFREML 648



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI      G   +A   FY M      P+V  +N +I+ L + G   +AR L + M   G
Sbjct: 503 LIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAG 562

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRK--------AIRRRIWEANHLFRLMLFKGFVPD 286
            +  P+V +Y  +I  Y   G      K         ++      N L   M+  G  PD
Sbjct: 563 AK--PNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPD 620

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           VV    LID CC+  RIE  L LF +M  K    + +T N  +R  +V
Sbjct: 621 VVTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENIKLRGVTV 668



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 23/228 (10%)

Query: 187 EALATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKAR-------FLLEQMELPGFR-C 237
           +AL  F  + Q R RP  +YA N ++  + R    +  R        +  +M   G +  
Sbjct: 82  DALDLFDELLQ-RARPGSIYALNQLLTTVARAPVSSSVRDGPALAVSMFNRMARAGAKKV 140

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            PD+ T+ ILIS  C  G       A+ +           ++  G     V +  L+   
Sbjct: 141 APDIATFGILISCCCDAGCLNLGFAALGQ-----------IIKTGLRAQAVTFTPLLRTL 189

Query: 298 CKTYRIERALEL-FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-QNLNHGV 355
           C   R   A+ +    M + GC P+  +Y + ++      + ++A E++  M ++ ++  
Sbjct: 190 CAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCP 249

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           P   SYT +IH   + G V +A     +++D G  P   T   V D L
Sbjct: 250 PNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGL 297


>gi|125562258|gb|EAZ07706.1| hypothetical protein OsI_29963 [Oryza sativa Indica Group]
          Length = 465

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 29/273 (10%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           LW    DM  R  G  ++ S+ + +I   G+  L ++A+  F R+ +F C      YN +
Sbjct: 137 LWSLAADM--RALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNAL 194

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQT 258
           ++ALC  G+F  A  LL +M   G    PD  T++ L+ ++C  G             + 
Sbjct: 195 LDALCANGSFAGAYKLLRRMARKG--VAPDRATFSTLVDAWCAAGKLREAQAFLDDMAER 252

Query: 259 GCRKAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           G    +R             R+ EA      M  +G +PDV  +N L +  C +  +E A
Sbjct: 253 GFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFA 312

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
           + L  D + +G  P+  TY   I   +    ID+A  +        H  P  S Y  II 
Sbjct: 313 VALLADASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGH-RPFPSLYAAIIK 371

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           ALC+AGR  +A  F  ++   G  P    Y ++
Sbjct: 372 ALCKAGRFADAFAFFGDMKSKGHPPNRPVYVML 404



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 95/250 (38%), Gaps = 51/250 (20%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL DM+ RG    V    +  L+  L   G + EA A   RM +    PDV  +N +  A
Sbjct: 245 FLDDMAERGFHPPVRGRDL--LVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEA 302

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC  G+   A  LL      G  CP D+ TY ++I +  K G           RI EA  
Sbjct: 303 LCSSGDVEFAVALLADASSRGL-CP-DISTYKVMIPAVAKAG-----------RIDEAFR 349

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF   L  G  P    Y  +I   CK  R   A   F DM  KG  PNR  Y        
Sbjct: 350 LFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVY-------- 401

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
                     M+ KM                       GR +EA ++L E+ + G  PR 
Sbjct: 402 ---------VMLVKM-------------------CVRGGRFVEAANYLVEMSEAGFAPRA 433

Query: 394 YTYKLVCDAL 403
            T+  V D L
Sbjct: 434 PTFNSVVDGL 443


>gi|125604075|gb|EAZ43400.1| hypothetical protein OsJ_28005 [Oryza sativa Japonica Group]
          Length = 461

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 29/273 (10%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           LW    DM  R  G  ++ S+ + +I   G+  L ++A+  F R+ +F C      YN +
Sbjct: 133 LWSLAADM--RALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNAL 190

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQT 258
           ++ALC  G+F  A  LL +M   G    PD  T++ L+ ++C  G             + 
Sbjct: 191 LDALCANGSFAGAYKLLRRMARKG--VAPDRATFSTLVDAWCAAGKLREAQAFLDDMAER 248

Query: 259 GCRKAIR------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           G    +R             R+ EA      M  +G +PDV  +N L +  C +  +E A
Sbjct: 249 GFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFA 308

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
           + L  D + +G  P+  TY   I   +    ID+A  +        H  P  S Y  II 
Sbjct: 309 VALLADASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGH-RPFPSLYAAIIK 367

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           ALC+AGR  +A  F  ++   G  P    Y ++
Sbjct: 368 ALCKAGRFADAFAFFGDMKSKGHPPNRPVYVML 400



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 95/250 (38%), Gaps = 51/250 (20%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FL DM+ RG    V    +  L+  L   G + EA A   RM +    PDV  +N +  A
Sbjct: 241 FLDDMAERGFHPPVRGRDL--LVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEA 298

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC  G+   A  LL      G  CP D+ TY ++I +  K G           RI EA  
Sbjct: 299 LCSSGDVEFAVALLADASSRGL-CP-DISTYKVMIPAVAKAG-----------RIDEAFR 345

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF   L  G  P    Y  +I   CK  R   A   F DM  KG  PNR  Y        
Sbjct: 346 LFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVY-------- 397

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
                     M+ KM                       GR +EA ++L E+ + G  PR 
Sbjct: 398 ---------VMLVKM-------------------CVRGGRFVEAANYLVEMSEAGFAPRA 429

Query: 394 YTYKLVCDAL 403
            T+  V D L
Sbjct: 430 PTFNSVVDGL 439


>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 525

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 140/302 (46%), Gaps = 19/302 (6%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A  F+ W +R  DF H+  +   +  +         LWDFL + +R  N   +T+     
Sbjct: 85  AHRFFLWAKRIPDFEHSLESYHILVEILGCSKQFALLWDFLIE-AREYNYFEITSKVFWI 143

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           + +      L +EA   F RM +F  +P V   + ++++LC   + N A+   ++ +  G
Sbjct: 144 VFRAYSRANLPSEASRAFNRMVEFGIKPCVDDLDQLLHSLCDRKHVNHAQEFFDKAK--G 201

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F   P   TY+IL+  + +    +G RK           +F  ML    V D++AYN L+
Sbjct: 202 FGIVPSAKTYSILVRGWARIRDASGARK-----------VFDEMLENNCVVDLLAYNALL 250

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK+  ++ A ++F +M   G  P+  ++  FI  Y   +++  A +++ +M+  +  
Sbjct: 251 DALCKSGDVDGAYKMFQEMGNLGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYD-L 309

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPS 410
           VP   ++  II  LC+  +V +A   L E++  G+ P  +TY  +    CD         
Sbjct: 310 VPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATK 369

Query: 411 LL 412
           LL
Sbjct: 370 LL 371



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 124/278 (44%), Gaps = 28/278 (10%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           +G G + +  + + L++        + A   F  M +  C  D+ AYN +++ALC+ G+ 
Sbjct: 200 KGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLENNCVVDLLAYNALLDALCKSGDV 259

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------RIWEAN 272
           + A  + ++M   G +  PD Y++ I I SYC         + + R         ++  N
Sbjct: 260 DGAYKMFQEMGNLGLK--PDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYDLVPNVYTFN 317

Query: 273 HLFRL----------------MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
           H+ +                 M+ KG  PD   YN ++   C    + RA +L   M++ 
Sbjct: 318 HIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRT 377

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC-EAGRVL 375
            C+P+R TYN  ++    +   D+  E+   M       PT ++YT +IH L  + G++ 
Sbjct: 378 KCLPDRHTYNMVLKLLIRIGRFDRVTEIWEGMSERKF-YPTVATYTVMIHGLVRKKGKLE 436

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
           EA  +   ++D G  P   T +++ + L    +  ++D
Sbjct: 437 EACRYFEMMIDEGIPPYSTTVEMLRNRLVGWGQMDVVD 474



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 102/244 (41%), Gaps = 26/244 (10%)

Query: 144 RGNNVKGLWDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           +  +V G +   ++M   GN G      S    I    +   V+ A     RMK++   P
Sbjct: 255 KSGDVDGAYKMFQEM---GNLGLKPDAYSFAIFIHSYCDASDVHSAYQVLDRMKRYDLVP 311

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           +VY +N +I  LC+    + A  LL++M   G    PD +TY  +++ +C +     C  
Sbjct: 312 NVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKG--ANPDTWTYNSIMAYHCDH-----CE- 363

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                +  A  L   M     +PD   YN ++    +  R +R  E+++ M+++   P  
Sbjct: 364 -----VNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRVTEIWEGMSERKFYPTV 418

Query: 323 VTY----NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            TY    +  +R    + E  +  EMM     ++ G+P  S+   ++         ++  
Sbjct: 419 ATYTVMIHGLVRKKGKLEEACRYFEMM-----IDEGIPPYSTTVEMLRNRLVGWGQMDVV 473

Query: 379 DFLA 382
           D LA
Sbjct: 474 DVLA 477


>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 154/368 (41%), Gaps = 63/368 (17%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG------------ 162
           A +F++W +R + + H+ +    M  + ++    +G    L+ M+RRG            
Sbjct: 180 ALDFFYWADRQWRYRHDAIVYYTMLDILSKTRLCQGARRILRLMTRRGIERSPEAFSYVM 239

Query: 163 -----NGELVTTSSVTCLIKVLGEE----------------GLVNEALATFYRMKQFRCR 201
                 G L     +  L++  G E                  + +AL    RMK     
Sbjct: 240 VSYSRAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIE 299

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+ +YN +I   C V   + A  L+ +M   G  CPPD  +Y  +++  CK       +
Sbjct: 300 PDIVSYNCLIKGYCDVHRIDDALELIAEMPFKG--CPPDKVSYYTVMAFLCKDRKVEEVK 357

Query: 262 KAIRRRIWEAN-------------------HLFRLMLF------KGFVPDVVAYNCLIDG 296
           + +   +  +N                   H    ++F      KGF  D V Y+ ++D 
Sbjct: 358 RLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDS 417

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV- 355
            CK   I++A  L  DM  KGC P+ VTY + I  +  V +ID+A +M+++M    HG  
Sbjct: 418 FCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQM--YKHGCK 475

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415
           P + +YT +++ LC  G+ LEAR+ +    +    P   TY  V   L    + S   D 
Sbjct: 476 PNTVTYTVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDL 535

Query: 416 LRKRIRDG 423
            R+ I  G
Sbjct: 536 TREMIEKG 543



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 27/239 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A +    M    C PDV  Y  +I+  CRVG  ++A+ +L+QM   G  C P+  TY
Sbjct: 424 IDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGKIDEAKKMLQQMYKHG--CKPNTVTY 481

Query: 245 TILISSYCKYGMQTGCRKAI----------------------RR--RIWEANHLFRLMLF 280
           T+L++  C  G     R+ I                      RR  ++ EA  L R M+ 
Sbjct: 482 TVLLNGLCHNGKSLEAREMINVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIE 541

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           KGF+P+ V  N LI   C+   +  A +  ++   KGC  N V + S I  +  + ++D 
Sbjct: 542 KGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKGCAVNVVNFTSVIYGFCQIGDLDA 601

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A+ M+  M  L++  P + +YT +  AL +  R+ EA + + +++  G  P   TY+ V
Sbjct: 602 ALSMLEDMY-LSNKHPDAITYTTLFDALGKKSRLDEASELIVKMLGKGIDPTPVTYRAV 659



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 16/211 (7%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L  EG ++EA      M +    P+    N++I +LCR  N   A+  LE+    G  C 
Sbjct: 523 LRREGKLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKYLEECLHKG--CA 580

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
            +V  +T +I  +C+ G            +  A  +   M      PD + Y  L D   
Sbjct: 581 VNVVNFTSVIYGFCQIG-----------DLDAALSMLEDMYLSNKHPDAITYTTLFDALG 629

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K  R++ A EL   M  KG  P  VTY + I  +     +D   +MM+ ++ +    P  
Sbjct: 630 KKSRLDEASELIVKMLGKGIDPTPVTYRAVIHRFCQWGRVD---DMMKLLEKMIARQPFK 686

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
           + Y  +I  LC  G   EA   L +++   S
Sbjct: 687 TVYNQVIEKLCYFGNREEAEKLLGKVLRTAS 717


>gi|255660890|gb|ACU25614.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 484

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G++G+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKQGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G            +  A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLISSHCKSG-----------NLDAAADVLKAMVRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGVLIENFCKAGQYDKAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L+  G
Sbjct: 362 QSTL-HLEP--SAYNPMIEYLCNNGQAAKAETLVRQLLKLG 399



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 75/200 (37%), Gaps = 19/200 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G ++ A      M +     +   Y V+I   C+ G ++KA  LL+++    
Sbjct: 297 LISSHCKSGNLDAAADVLKAMVRLSVPTEAGHYGVLIENFCKAGQYDKAVKLLDKLIEKD 356

Query: 235 FRCPP------DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
               P      +   Y  +I   C  G        +R+            L K  V D  
Sbjct: 357 IILRPQSTLHLEPSAYNPMIEYLCNNGQAAKAETLVRQ------------LLKLGVQDPT 404

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           A N LI G  +    +   EL   M ++     +  YNS ++ Y   NE   A   +  M
Sbjct: 405 ALNTLIRGHSQEGSPDSXFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPADAKAALDSM 464

Query: 349 QNLNHGVPTSSSYTPIIHAL 368
              +H +P SS +  ++ +L
Sbjct: 465 IENDH-LPDSSLFRSVMESL 483


>gi|255660900|gb|ACU25619.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 481

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 135/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+ZG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKZGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN  
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTX 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDXALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 93/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKZGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTXINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V  A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDXALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 25/214 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA   F  MK     P V  Y  +I     V   + A  L+E+M+  GF   P+  TY
Sbjct: 201 MEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDXALRLVEEMK--GFGIKPNAITY 258

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRI 303
           + L+   C              ++ EA  + + M+ K   P D   +  LI   C +  +
Sbjct: 259 STLLPGLCN-----------AEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCXSGNL 307

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM---------QNLNHG 354
           + A ++   M +         Y   I  +    + DKA++++ K+         Q+  H 
Sbjct: 308 DAAADVLKAMXRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIILRPQSTLHL 367

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            P  S+Y P I  LC  G+  +A   + +L+  G
Sbjct: 368 EP--SAYNPXIEYLCNNGQAXKAETLVRQLMKLG 399



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 70/189 (37%), Gaps = 19/189 (10%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP--- 239
           G ++ A      M +     +   Y V+I   C+ G ++KA  LL+++        P   
Sbjct: 305 GNLDAAADVLKAMXRLSVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDIILRPQST 364

Query: 240 ---DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
              +   Y   I   C  G        +R+            L K  V D  A N LI G
Sbjct: 365 LHLEPSAYNPXIEYLCNNGQAXKAETLVRQ------------LMKLGVQDPTALNTLIRG 412

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
             +    + A EL   M ++     +  YNS ++ Y   NE   A   +  M   +H +P
Sbjct: 413 HSQEGSPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSMIENDH-LP 471

Query: 357 TSSSYTPII 365
            SS +  ++
Sbjct: 472 DSSLFRSVM 480


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G +NE       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M  KG  P++ TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWGLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + N  FRL   M   G  PDV  Y+ LI+G CK  +++ A  LFD+M  KG +P
Sbjct: 186 ------DLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E++  G  P ++TY  + D 
Sbjct: 297 DLIDEMIMKGLKPDKFTYTTLIDG 320



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG   TT     LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANVLFDEMLDKGLVPNGVTFTT-----LIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G +  PD +TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK--PDKFTYTTLIDGNCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 105/199 (52%), Gaps = 14/199 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--VPNGVTFTTLIDGHCKNG----- 255

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +   PD++ YN LI G CK   +++A +L D+M+ KG  P
Sbjct: 256 ------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKP 309

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           ++ TY + I       ++D A E  ++M   N  +    +YT +I  LC+ GR ++A   
Sbjct: 310 DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD-DVAYTALISGLCQEGRSVDAEKM 368

Query: 381 LAELVDGGSVPREYTYKLV 399
           L E++  G  P   TY ++
Sbjct: 369 LREMLSVGLKPDIGTYTMI 387



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 107/204 (52%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 136 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 186 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A 
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAH 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P ++TY  + D 
Sbjct: 297 DLIDEMSMKGLKPDKFTYTTLIDG 320



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 16/198 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEM 302

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
            + G +  PD +TYT LI   CK G + T      R+R+ + N   RL        D VA
Sbjct: 303 SMKGLK--PDKFTYTTLIDGCCKEGDLDTAFEH--RKRMIQEN--IRL--------DDVA 348

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ
Sbjct: 349 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQ 408

Query: 350 NLNHGVPTSSSYTPIIHA 367
              H  P+  +Y  +++ 
Sbjct: 409 RNGHA-PSVVTYNVLMNG 425



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 15/153 (9%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  ++K   D + +MS +G        + T LI    +EG ++ A     RM Q   R D
Sbjct: 288 KKGDLKQAHDLIDEMSMKGLKP--DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 345

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
             AY  +I+ LC+ G    A  +L +M   G +  PD+ TYT++I+ +CK G        
Sbjct: 346 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PDIGTYTMIINEFCKKG-------- 395

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
               +W+ + L + M   G  P VV YN L++G
Sbjct: 396 ---DVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 36/246 (14%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   ++  A +++   + R G  + +      +E  G +   D+Y +
Sbjct: 11  HTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQ-RSDIYVF 69

Query: 245 TILISSYCKYGMQTGCRKAIR-------RRIWEA--------NHLFRLMLFK---GFVPD 286
           + LI++Y + G     R AI         ++W           HL +L  FK   GF  D
Sbjct: 70  SGLITAYLESGF---LRDAIECYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYED 126

Query: 287 VVA---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           ++          +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  + +
Sbjct: 127 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 186

Query: 338 IDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +D+   +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G VP   T+
Sbjct: 187 LDEGFRLKSAM--LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTF 244

Query: 397 KLVCDA 402
             + D 
Sbjct: 245 TTLIDG 250


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 132/269 (49%), Gaps = 20/269 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
             +   V    D L  M   G   + VT +S   LI  L   G  ++A      M +   
Sbjct: 196 LCKSKQVDNALDLLNRMEVDGIRPDAVTYNS---LISGLCNSGRWDDATRMVSCMTKREI 252

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PDV+ +N +I+A  + G  ++A  L E+M        PD+ TY++LI   C Y      
Sbjct: 253 YPDVFTFNALIDACVKEGRISEAEELYEEMIRRSL--DPDIVTYSLLIYGLCMYS----- 305

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+ EA  +F  M+ KG  PDVV Y+ LI+G CK+ ++E  ++LF +M+++G + 
Sbjct: 306 ------RLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVR 359

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARD 379
           N VTY   I+ Y    +++ A E+ + M  +  GVP +  +Y  ++H LC+ G++ +A  
Sbjct: 360 NTVTYTVLIQGYCRAGKLNVAEEIFKWM--VFCGVPPNIITYNVLLHGLCDNGKIEKALV 417

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEE 408
            LA++   G      TY ++   +  A E
Sbjct: 418 ILADMQKSGMDADIVTYNIIIRGMCKAGE 446



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 140/323 (43%), Gaps = 34/323 (10%)

Query: 118 FYHWVE-RFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNG-ELVTTSSVTCL 175
            Y W + +     HN  TC  +   F R + +     FL  M + G+  ++VT  S   L
Sbjct: 101 IYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGS---L 157

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           +        + +AL  F RM +    P+V  YN +I+ LC+    + A  LL +ME+ G 
Sbjct: 158 LNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGI 217

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAI------------------------RRRIWEA 271
           R  PD  TY  LIS  C  G      + +                          RI EA
Sbjct: 218 R--PDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEA 275

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             L+  M+ +   PD+V Y+ LI G C   R++ A ++F  M  KGC P+ VTY+  I  
Sbjct: 276 EELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILING 335

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           Y    +++  +++  +M      V  + +YT +I   C AG++  A +    +V  G  P
Sbjct: 336 YCKSKKVEHGMKLFCEMSQ-RGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPP 394

Query: 392 REYTYKLVCDAL--NAAEEPSLL 412
              TY ++   L  N   E +L+
Sbjct: 395 NIITYNVLLHGLCDNGKIEKALV 417



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 27/243 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    +EG ++EA   +  M +    PD+  Y+++I  LC     ++A  +   M   G
Sbjct: 262 LIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKG 321

Query: 235 FRCPPDVYTYTILISSYCK-----YGMQTGC----RKAIRR---------------RIWE 270
             C PDV TY+ILI+ YCK     +GM+  C    R  +R                ++  
Sbjct: 322 --CFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNV 379

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  +F+ M+F G  P+++ YN L+ G C   +IE+AL +  DM K G   + VTYN  IR
Sbjct: 380 AEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIR 439

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                 E+  A ++   + NL    P   +YT ++  L + G   EA     ++ + G +
Sbjct: 440 GMCKAGEVADAWDLYCSL-NLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGIL 498

Query: 391 PRE 393
           P E
Sbjct: 499 PNE 501


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 110/221 (49%), Gaps = 14/221 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G V++A+  F +M++    P+V  YN +I+ LC+ G  ++A    E+ME    R  P + 
Sbjct: 211 GRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKE--RVKPSLV 268

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY +LI+   K             R  EAN + + M  +G+ P+ V YN LIDG C+   
Sbjct: 269 TYGVLINGLVKL-----------ERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGN 317

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           I  AL++ DDM   G  PN VT NS I+ Y   N+++ A  ++ +M     GV    ++T
Sbjct: 318 ISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLT-GGGVINQGTFT 376

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +IH LC   R   A  F+ E++     P +    L+   L
Sbjct: 377 SVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGL 417



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 16/234 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G    T +   LI  L E G   EA      M +     D  +YN +I A C+ G   + 
Sbjct: 437 GFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEG 496

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L E+M   G +  PD+YTY +L+   C  G           +I EA  L+      G 
Sbjct: 497 FKLKEEMVRRGIQ--PDMYTYNMLLHGLCNMG-----------KIEEAGGLWHECKKNGN 543

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PD   Y  +IDG CK  R+E   +LF +M       N V Y + IR Y     + +A  
Sbjct: 544 FPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFR 603

Query: 344 MMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +   M+  + G+P TS++Y+ +IH L   G V  A   L E+   G  P    Y
Sbjct: 604 LRDDMR--SRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCY 655



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 15/189 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            +    N++  +    DM  RG  +  T+++ + LI  L   GLV+ A      M++   
Sbjct: 591 AYCENGNMREAFRLRDDMRSRGIPQ--TSATYSSLIHGLSNIGLVDSANQLLDEMRKEGL 648

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+V  Y  +I   C++G  +K   +L++M +      P+  TYTI+I+ +CK G     
Sbjct: 649 SPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVH--PNKITYTIMINGHCKLG----- 701

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  +  A  L   M  KG VPD V YN L +G CK  ++E AL++ D M+  G   
Sbjct: 702 ------NMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISL 755

Query: 321 NRVTYNSFI 329
           + +TY + I
Sbjct: 756 DDITYTTLI 764



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 119/309 (38%), Gaps = 66/309 (21%)

Query: 154 FLKDMSRRGNGELVTTS-SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            LK+M  RG   LV  S S   LI    +EG V E       M +   +PD+Y YN++++
Sbjct: 464 LLKEMLERG---LVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLH 520

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK------------------- 253
            LC +G   +A  L  + +  G    PD YTY I+I  YCK                   
Sbjct: 521 GLCNMGKIEEAGGLWHECKKNGNF--PDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKI 578

Query: 254 -------------YGMQTGCRKAIRRR---------------------------IWEANH 273
                        Y      R+A R R                           +  AN 
Sbjct: 579 EQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQ 638

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L   M  +G  P+VV Y  LI G CK  ++ +   +  +M+     PN++TY   I  + 
Sbjct: 639 LLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHC 698

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
            +  +  A +++ +M      VP + +Y  + +  C+ G++ EA      +  GG    +
Sbjct: 699 KLGNMKAAAKLLNEMAQ-KGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDD 757

Query: 394 YTYKLVCDA 402
            TY  + D 
Sbjct: 758 ITYTTLIDG 766



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 129/293 (44%), Gaps = 21/293 (7%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           N +TC  +   + + N ++     L++M   G   ++   + T +I  L  +   + AL 
Sbjct: 336 NSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGG--VINQGTFTSVIHRLCLKCRFDSALL 393

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
               M     +P+     ++++ LC+ G  ++A  L  ++   GF    +  T   LI  
Sbjct: 394 FIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGF--AANTVTSNALIHG 451

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            C+ G +            EA  L + ML +G V D ++YN LI  CCK  ++E   +L 
Sbjct: 452 LCEAGSKE-----------EAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLK 500

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
           ++M ++G  P+  TYN  +     + +I++A  +  + +  N   P + +Y  +I   C+
Sbjct: 501 EEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKK-NGNFPDAYTYGIMIDGYCK 559

Query: 371 AGRVLEARDFLAELV----DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
           A RV E      E+V    +  +V      +  C+  N  E   L DD +R R
Sbjct: 560 ANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDD-MRSR 611



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 110/251 (43%), Gaps = 17/251 (6%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           +T L+  L + G  +EA+  +YR+ +     +    N +I+ LC  G+  +A  LL++M 
Sbjct: 410 LTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEML 469

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G     D  +Y  LI + CK G           ++ E   L   M+ +G  PD+  YN
Sbjct: 470 ERGLVL--DSISYNTLILACCKEG-----------KVEEGFKLKEEMVRRGIQPDMYTYN 516

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            L+ G C   +IE A  L+ +  K G  P+  TY   I  Y   N +++  ++ ++M  +
Sbjct: 517 MLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTM 576

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN---AAEE 408
                 +  Y  +I A CE G + EA     ++   G      TY  +   L+     + 
Sbjct: 577 KIE-QNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDS 635

Query: 409 PSLLDDGLRKR 419
            + L D +RK 
Sbjct: 636 ANQLLDEMRKE 646



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 3/131 (2%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF L+  KG  P +   N L+    K   ++ + ++FD M   G  P+   +++ +  + 
Sbjct: 149 LFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFC 208

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               +D AIE+ RKM+ +  GV P   +Y  IIH LC+ GR+ EA  F  ++      P 
Sbjct: 209 TGGRVDDAIELFRKMEKV--GVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPS 266

Query: 393 EYTYKLVCDAL 403
             TY ++ + L
Sbjct: 267 LVTYGVLINGL 277


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 130/270 (48%), Gaps = 17/270 (6%)

Query: 118  FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
            F++W     +F H+     EM  +  +       W  + D+ +  N E +   + T L++
Sbjct: 1164 FFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLI-DLMKTRNVE-IPVETFTILVR 1221

Query: 178  VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
               + GL  EA+  F RM+ + C+PD  A++VVI++L +     +A+   + ++    R 
Sbjct: 1222 RYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLK---DRF 1278

Query: 238  PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
             PDV  YT L+  +C+ G            I EA  +F  M   G  P+V  Y+ +ID  
Sbjct: 1279 EPDVVVYTSLVHGWCRAG-----------NISEAERVFGEMKMAGIXPNVYTYSIVIDAL 1327

Query: 298  CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
            C++ +I RA ++F +M   GC PN +T+N+ +R +      +K +++  +M+ L    P 
Sbjct: 1328 CRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLG-CPPD 1386

Query: 358  SSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            + +Y  +I + C    + EA   L  +  G
Sbjct: 1387 AITYNFLIESHCRDDNLEEAVKILNSVKKG 1416



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 7/168 (4%)

Query: 271  ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
            A  L  LM  +     V  +  L+    K      A+  F+ M   GC P+++ ++  I 
Sbjct: 1197 AWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVI- 1255

Query: 331  YYSVVNEIDKAIEMMRKMQNL-NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
              S +++  +AIE      +L +   P    YT ++H  C AG + EA     E+   G 
Sbjct: 1256 --SSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGI 1313

Query: 390  VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE---YRFRQVMKV 434
             P  YTY +V DAL  + + +   D   + I  G +     F  +M+V
Sbjct: 1314 XPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRV 1361



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 12/153 (7%)

Query: 167  VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
            +  SS   +   + + G VN A   F +MK  +CRP+   YN+++       + +    L
Sbjct: 1419 LNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKL 1478

Query: 227  LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
             ++M+       P+  TY +LIS++C  G         +  I E          K   P 
Sbjct: 1479 RKEMDEN--EIEPNANTYRVLISTFCGIGHWNNAYSFFKEMIEE----------KCLRPS 1526

Query: 287  VVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
            +  Y  ++    K  ++++  EL + M  +G +
Sbjct: 1527 LPVYEMVLQQLRKAGQLKKHEELVEKMVNRGFV 1559


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 15/228 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           S T +++ L  E   ++A+    R   +  C PDV++Y V++  LC      +A  L+  
Sbjct: 50  SFTPILRTLCAEKRTSDAMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHM 109

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M   G  CPP+V +YT +I  + K              + +A  LF  ML +G  PDVV 
Sbjct: 110 MAEDGDHCPPNVVSYTTVIHGFFK-----------EDEVGKAYTLFCEMLDRGIPPDVVT 158

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
            N +IDG CK   +++A E+   M  K  +P+  TYNS +  Y    ++ +A+ ++++M 
Sbjct: 159 CNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMS 218

Query: 350 NLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
              HG P +  +Y+ +I  LC+ G   EAR+ L  ++     P   TY
Sbjct: 219 --RHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATY 264



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 22/273 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            LK MSR G      T S+  LI  L + G   EA      M Q R  P+V  Y  +++ 
Sbjct: 213 ILKQMSRHGQPPNGVTYSM--LIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHG 270

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
               G+  +   L++ M   G R  PD + + I I +Y K G           R+ EA  
Sbjct: 271 YATKGDLVEMNNLIDLMVQNGVR--PDHHIFNIQIYAYVKCG-----------RLDEAML 317

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
            F  M  +G +PD+++Y  +IDG CK  R++ A+  F  M   G  P+ V + + I  +S
Sbjct: 318 TFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGFS 377

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
           +  + +KA E+  +M  ++ G+ PT   +T +I  L + G+V EA+     +      P 
Sbjct: 378 MYGKWEKAEELFYEM--MDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPN 435

Query: 393 EYTYKLVCDALNAA----EEPSLLDDGLRKRIR 421
             +Y  +      A    E   LLDD L   ++
Sbjct: 436 VVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLK 468



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 43/227 (18%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++EA+ TF +M+Q    PD+ +Y  +I+ LC++G  + A     QM   G    PD+ 
Sbjct: 310 GRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLS--PDIV 367

Query: 243 TYTILISSYCKYG------------MQTGCRKAI------------RRRIWEANHLFRLM 278
            +T LI  +  YG            M  G R  +              ++ EA  LF LM
Sbjct: 368 VFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDLM 427

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
                 P+VV+YN +I G     +++  L+L DDM   G  PN VT+N+          +
Sbjct: 428 PIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTL---------L 478

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           D  + M  K        P  ++   +I + CE GR+ +      E++
Sbjct: 479 DDMLSMGLK--------PDVATCNTLIDSCCEDGRIEDVLTLFREML 517



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 121/309 (39%), Gaps = 60/309 (19%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D +  M+  G+       S T +I    +E  V +A   F  M      PDV   N +I+
Sbjct: 105 DLIHMMAEDGDHCPPNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIID 164

Query: 213 ALCRVGNFNKARFLLEQM---------------------------------ELPGFRCPP 239
            LC+V   +KA  +L QM                                 ++     PP
Sbjct: 165 GLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPP 224

Query: 240 DVYTYTILISSYCKYGMQTGCRK------------------------AIRRRIWEANHLF 275
           +  TY++LI   CK+G  T  R+                        A +  + E N+L 
Sbjct: 225 NGVTYSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLI 284

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
            LM+  G  PD   +N  I    K  R++ A+  F+ M ++G +P+ ++Y + I     +
Sbjct: 285 DLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKI 344

Query: 336 NEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
             +D A  M +  Q ++ G+ P    +T +IH     G+  +A +   E++D G  P   
Sbjct: 345 GRLDAA--MSQFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVV 402

Query: 395 TYKLVCDAL 403
            +  + D L
Sbjct: 403 VFTTMIDKL 411



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 67/162 (41%), Gaps = 10/162 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI      G   +A   FY M     RP V  +  +I+ L + G   +A+ L + M +
Sbjct: 370 TNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPI 429

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRK--------AIRRRIWEANHLFRLMLFKGFV 284
              +  P+V +Y  +I  Y   G      K         ++      N L   ML  G  
Sbjct: 430 ASVK--PNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLLDDMLSMGLK 487

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           PDV   N LID CC+  RIE  L LF +M  K    + VT N
Sbjct: 488 PDVATCNTLIDSCCEDGRIEDVLTLFREMLSKAAKTDTVTEN 529



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 13/185 (7%)

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           +  P   TYTILIS  C  G       A+ + I             G   + +++  ++ 
Sbjct: 8   KVAPTTVTYTILISCCCYVGCLNLAFAALGQIIK-----------TGLRANAISFTPILR 56

Query: 296 GCCKTYRIERALELFDDMNKK-GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-QNLNH 353
             C   R   A+ +      K GC P+  +Y   ++      + ++A++++  M ++ +H
Sbjct: 57  TLCAEKRTSDAMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAEDGDH 116

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
             P   SYT +IH   +   V +A     E++D G  P   T   + D L   +     +
Sbjct: 117 CPPNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAE 176

Query: 414 DGLRK 418
           + LR+
Sbjct: 177 EVLRQ 181


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 124/291 (42%), Gaps = 53/291 (18%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           + ++D L D   R  G   ++S+   L+      G   +A+  F RM +F+ RP  + YN
Sbjct: 119 EAMFDALADA--RAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYN 176

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
            ++ AL   G    A  L  +M   G  C P+  TY +L+   CK GM            
Sbjct: 177 TILKALVDSGVILLALALYNRMVAAG--CAPNRATYNVLMDGLCKQGMAG---------- 224

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +A  +F  ML +G +P+V  Y  L+   C   +I+ A++L   M  KGC+P+ VTYN+F
Sbjct: 225 -DALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAF 283

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGV--------------------------------- 355
           +     V  +++A + +  +Q+    +                                 
Sbjct: 284 LSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNI 343

Query: 356 -PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCD 401
            P    YT +I    EAGR+ +A  FL  +   G VP  + Y    K++CD
Sbjct: 344 SPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCD 394



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 131/278 (47%), Gaps = 31/278 (11%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           N  ++ +++ T +I  L + GLV+EA+  F  M +  C P V  YN +I+   R G   +
Sbjct: 411 NNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEE 470

Query: 223 ARFLLEQMELP-----------GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           AR L  +ME+            G     D  +   L+   C+ G           ++ +A
Sbjct: 471 ARMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSG-----------QVLKA 519

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             L R ++  G VPDVV YN LI+G CK   ++ A+ LF ++  KG  P+ +TY + I  
Sbjct: 520 YKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDG 579

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
               +  + A+ + + +   +   P+ S Y  ++ +LC   ++ +A +   +      +P
Sbjct: 580 LLRAHRENDAMMLFQNILQ-SGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDY-----LP 633

Query: 392 REYTYKLVCDALNAAE---EPSLLDDGLRKRIRDGIEY 426
           ++Y + +  + L  A    E   LDDG+R+ I+   EY
Sbjct: 634 KKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEY 671



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 27/252 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L ++G+  +AL  F  M      P+V  Y V++++LC  G  ++A  LL  M+  G
Sbjct: 213 LMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKG 272

Query: 235 FRCPPDVYTYTILISSYCKYG------------MQTGCRKAIR------------RRIWE 270
             C PD  TY   +S  CK G               G    ++            RR  E
Sbjct: 273 --CLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDE 330

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
               ++ ML +   PDVV Y  +I GC +  RIE AL   D M KKG +P+   YN+ ++
Sbjct: 331 GFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLK 390

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                 ++++A  +  +M   N+ V  S++ T +I  LC+ G V EA     E+ + G  
Sbjct: 391 VLCDHGDLERAHTLRSEMLQ-NNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCD 449

Query: 391 PREYTYKLVCDA 402
           P   TY  + D 
Sbjct: 450 PTVMTYNALIDG 461



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 131/325 (40%), Gaps = 94/325 (28%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA--RFLLEQ- 229
           T L+  L   G ++EA+     MK   C PD   YN  ++ LC+VG  N+A  R ++ Q 
Sbjct: 246 TVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQD 305

Query: 230 ----MELPGFRC--------------------------PPDVYTYTILISSYCKYGMQTG 259
               + L G+ C                           PDV  YTI+I          G
Sbjct: 306 GGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIR---------G 356

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC--------------------------- 292
           C +A   RI +A     +M  KGFVPD   YN                            
Sbjct: 357 CAEA--GRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLV 414

Query: 293 --------LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
                   +I G CK   ++ A+++FD+M + GC P  +TYN+ I  +     +++A  +
Sbjct: 415 LDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARML 474

Query: 345 MRKMQNLN------------HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             KM+  N            + V  S S   ++H +C++G+VL+A   L  ++D G VP 
Sbjct: 475 FHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPD 534

Query: 393 EYTYKLVCDALNAAEEPSLLDDGLR 417
             TY  + + L  A     LD  +R
Sbjct: 535 VVTYNTLINGLCKARN---LDGAVR 556


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 17/245 (6%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           W F+  M  R     VT  +   L++     GL  EA+  F RM+ + C+PD  A++++I
Sbjct: 114 WYFIDLMKARNVD--VTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILI 171

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + LCR    ++A+   + ++    +  PDV  YT L+  +C+ G            I EA
Sbjct: 172 SILCRERRASQAQEFFDSLK---DKFEPDVIVYTNLVRGWCRAG-----------NISEA 217

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +F  M   G  P+V  Y+ +ID  C+  +I RA ++F +M   GC PN +TYNS +R 
Sbjct: 218 ERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRI 277

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           +      +K +++  +M+ L    P + +Y  +I   C+   + +A   +  +   G  P
Sbjct: 278 HVKAGRTEKVLQVYNQMKRLG-CEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAP 336

Query: 392 REYTY 396
              T+
Sbjct: 337 NASTF 341



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 132/345 (38%), Gaps = 78/345 (22%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFA----------RGNNVKGLWDFLKDMSRRGNG 164
           A E  H   R  D+      CK   I F+          R +  +  +D LKD   +   
Sbjct: 145 AAEAIHAFNRMEDY-----NCKPDKIAFSILISILCRERRASQAQEFFDSLKD---KFEP 196

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +++     T L++     G ++EA   F  MK    +P+VY Y++VI++LCR G   +A 
Sbjct: 197 DVIV---YTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAH 253

Query: 225 FLLEQM---------------------------------ELPGFRCPPDVYTYTILISSY 251
            +  +M                                 ++    C PD  TY  LI ++
Sbjct: 254 DIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETH 313

Query: 252 CK----------YGM--QTGCRK------------AIRRRIWEANHLFRLMLFKGFVPDV 287
           CK           G+  + GC              A    +  A+ +++ M       + 
Sbjct: 314 CKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANT 373

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V YN L+     +   +  L+L  +M++    PN  TY   I  Y  +   + A +  R+
Sbjct: 374 VTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMGHWNNAYKFFRE 433

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
           M +     P+   Y  ++  L +AG++ +  + + ++VD G V R
Sbjct: 434 MIDEKCLRPSLPVYDMVLQQLRKAGQLKKHEELVEKMVDRGFVTR 478



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 79/206 (38%), Gaps = 52/206 (25%)

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
           FR  P+  AYN +++   +V  F+ A + ++ M+         V T+ IL+  Y + G+ 
Sbjct: 90  FRKSPE--AYNEMVDFSGQVMMFDVAWYFIDLMKARNVDVT--VETFLILMRRYVRAGLA 145

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                       EA H F  M      PD +A++ LI   C+  R  +A E FD +  K 
Sbjct: 146 A-----------EAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSLKDK- 193

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P+ + Y + +R +                                    C AG + EA
Sbjct: 194 FEPDVIVYTNLVRGW------------------------------------CRAGNISEA 217

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
                E+   G  P  YTY +V D+L
Sbjct: 218 ERVFGEMKVAGIKPNVYTYSIVIDSL 243


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 125/274 (45%), Gaps = 19/274 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + LK+M  RG    +TT +   ++K     G +  A   F  MK+  C  DV  Y  V++
Sbjct: 216 EVLKEMVERGINPNLTTYNT--MLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVH 273

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
                G   +AR + ++M   G    P V TY  +I   CK           +  +  A 
Sbjct: 274 GFGVAGEIKRARNVFDEMIREG--VLPSVATYNAMIQVLCK-----------KDNVENAV 320

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F  M+ +G+ P+V  YN LI G        R  EL   M  +GC PN  TYN  IRYY
Sbjct: 321 VMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYY 380

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR---VLEARDFLAELVDGGS 389
           S  +E++KA+ +  KM +    +P   +Y  +I  +    R   ++ A   L E+V+ G 
Sbjct: 381 SECSEVEKALGLFEKMGS-GDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGF 439

Query: 390 VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           +PR++T+  V + L      +   + LR + + G
Sbjct: 440 IPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKSG 473



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 146/318 (45%), Gaps = 20/318 (6%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGI-VFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           KA +F+H+++     + ++ +  ++ I + AR +    +W  +  M     G    T ++
Sbjct: 72  KALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAI 131

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
               +     G  ++A+  F  M +  C  D+ ++N +++ LC+     KA  L   +  
Sbjct: 132 VA--ERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALR- 188

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              R   D  TY ++++ +C           + +R  +A  + + M+ +G  P++  YN 
Sbjct: 189 --GRFSVDTVTYNVILNGWC-----------LIKRTPKALEVLKEMVERGINPNLTTYNT 235

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           ++ G  +  +I  A E F +M K+ C  + VTY + +  + V  EI +A  +  +M  + 
Sbjct: 236 MLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM--IR 293

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
            GV P+ ++Y  +I  LC+   V  A     E+V  G  P   TY ++   L  A E S 
Sbjct: 294 EGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSR 353

Query: 412 LDDGLRKRIRDGIEYRFR 429
            ++ +++   +G E  F+
Sbjct: 354 GEELMQRMENEGCEPNFQ 371


>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 605

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 115/249 (46%), Gaps = 27/249 (10%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  V T++   LI     E  ++EA+    +MK F C PD  +YN +++ LC+ G  N+A
Sbjct: 43  GVEVNTNTFNILICGCCIENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEA 102

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI------------------- 264
           R LL  M+  G    P+  T+ IL+S YCK G      + I                   
Sbjct: 103 RDLLLDMKNNGLF--PNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLI 160

Query: 265 -----RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  +I EA  L   M     +P VV YN LI+GC +     +  EL D+M  KG  
Sbjct: 161 GGLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVK 220

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN VTYN  +++Y    ++D A   +RKM+      P   ++  + +  C+AGR+ EA  
Sbjct: 221 PNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFS-PDCVTFNTLSNGYCKAGRLSEAFR 279

Query: 380 FLAELVDGG 388
            + E+   G
Sbjct: 280 MMDEMSRKG 288



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 43/267 (16%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           N  L    + T LI  L ++G ++EA      M+  +  P V  YN++IN      +  K
Sbjct: 147 NNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLK 206

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
              L+++ME  G +  P+  TY +++  Y K G           ++  A +  R M   G
Sbjct: 207 GFELIDEMEGKGVK--PNAVTYNVVVKWYVKEG-----------KMDNAGNELRKMEESG 253

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
           F PD V +N L +G CK  R+  A  + D+M++KG   N VT N+ +       ++D A 
Sbjct: 254 FSPDCVTFNTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAY 313

Query: 343 EMMRK-------MQNLNHG-----------------------VPTSSSYTPIIHALCEAG 372
           +++         +  +++G                       +P+  +Y  +I  LC +G
Sbjct: 314 KLLSSASKRGYFVDEVSYGTLIMGYFKVGKSXXWDEMKEKEIIPSIITYGTMIGGLCRSG 373

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLV 399
           +  ++ D   EL++ G VP + TY  +
Sbjct: 374 KTDQSIDKCNELLESGLVPDQTTYNTI 400



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 96/200 (48%), Gaps = 14/200 (7%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            MK+    P +  Y  +I  LCR G  +++     ++   G    PD  TY  +I  YC+
Sbjct: 349 EMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGL--VPDQTTYNTIILGYCR 406

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           ++ +A H    M+ K F PD+   N L+ G C    +++AL+LF   
Sbjct: 407 EG-----------QVDKAFHFRNKMVKKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTW 455

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
             KG   + VT+N+ I         ++A +++ +M+    G P   ++  I+ AL +AGR
Sbjct: 456 ISKGKAIDAVTFNTIISGLCEEGRFEEAFDLLAEMEEKKLG-PDCYTHNAILSALADAGR 514

Query: 374 VLEARDFLAELVDGGSVPRE 393
           + EA +F++ +V+ G +  +
Sbjct: 515 MKEAEEFMSGIVEQGKLQDQ 534



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 27/216 (12%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           MK+   +P++   N +I AL R                  +   P VY    + S   K 
Sbjct: 1   MKRLHLKPNLLTLNTLIKALVR------------------YPSKPSVYLSKAIFSDVIKL 42

Query: 255 GMQTG--------CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           G++          C   I  ++ EA  L   M      PD V+YN ++D  CK  ++  A
Sbjct: 43  GVEVNTNTFNILICGCCIENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEA 102

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
            +L  DM   G  PNR T+N  +  Y  +  + +A E++  M   N+ +P   +YT +I 
Sbjct: 103 RDLLLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMAR-NNVLPDVRTYTTLIG 161

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            LC+ G++ EA     E+ +   +P   TY ++ + 
Sbjct: 162 GLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLING 197



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 35/224 (15%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN +I   CR G  +KA     +M    F+  PD++T  IL+   C  GM     
Sbjct: 392 PDQTTYNTIILGYCREGQVDKAFHFRNKMVKKSFK--PDLFTCNILVRGLCTEGM---LD 446

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
           KA++        LF+  + KG   D V +N +I G C+  R E A +L  +M +K   P+
Sbjct: 447 KALK--------LFKTWISKGKAIDAVTFNTIISGLCEEGRFEEAFDLLAEMEEKKLGPD 498

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMR------KMQNLNHGV----------------PTSS 359
             T+N+ +   +    + +A E M       K+Q+    +                P S 
Sbjct: 499 CYTHNAILSALADAGRMKEAEEFMSGIVEQGKLQDQTISLNKRKTESSSETSQESDPNSV 558

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +++  I+ LC  G+  +A   + E    G +  + TY  + + L
Sbjct: 559 AFSEQINELCTQGKYKDAMHMIQESTQKGIILHKSTYISLMEGL 602



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 133/326 (40%), Gaps = 73/326 (22%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F   +++KG ++ + +M  +G      T +V  ++K   +EG ++ A     +M++    
Sbjct: 199 FECSSSLKG-FELIDEMEGKGVKPNAVTYNV--VVKWYVKEGKMDNAGNELRKMEESGFS 255

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQME-----------------LPGFRCPPDVYTY 244
           PD   +N + N  C+ G  ++A  ++++M                  L G R   D Y  
Sbjct: 256 PDCVTFNTLSNGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYK- 314

Query: 245 TILISSYCKYG----------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             L+SS  K G          +  G  K  +   W+       M  K  +P ++ Y  +I
Sbjct: 315 --LLSSASKRGYFVDEVSYGTLIMGYFKVGKSXXWDE------MKEKEIIPSIITYGTMI 366

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN---- 350
            G C++ + +++++  +++ + G +P++ TYN+ I  Y    ++DKA     KM      
Sbjct: 367 GGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCREGQVDKAFHFRNKMVKKSFK 426

Query: 351 --------LNHGVPTSS----------------------SYTPIIHALCEAGRVLEARDF 380
                   L  G+ T                        ++  II  LCE GR  EA D 
Sbjct: 427 PDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVTFNTIISGLCEEGRFEEAFDL 486

Query: 381 LAELVDGGSVPREYTYKLVCDALNAA 406
           LAE+ +    P  YT+  +  AL  A
Sbjct: 487 LAEMEEKKLGPDCYTHNAILSALADA 512


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 124/291 (42%), Gaps = 53/291 (18%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           + ++D L D   R  G   ++S+   L+      G   +A+  F RM +F+ RP  + YN
Sbjct: 119 EAMFDALADA--RAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYN 176

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
            ++ AL   G    A  L  +M   G  C P+  TY +L+   CK GM            
Sbjct: 177 TILKALVDSGVILLALALYNRMVAAG--CAPNRATYNVLMDGLCKQGMAG---------- 224

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +A  +F  ML +G +P+V  Y  L+   C   +I+ A++L   M  KGC+P+ VTYN+F
Sbjct: 225 -DALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAF 283

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGV--------------------------------- 355
           +     V  +++A + +  +Q+    +                                 
Sbjct: 284 LSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNI 343

Query: 356 -PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCD 401
            P    YT +I    EAGR+ +A  FL  +   G VP  + Y    K++CD
Sbjct: 344 SPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCD 394



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 132/280 (47%), Gaps = 31/280 (11%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           N  ++ +++ T +I  L + GLV+EA+  F  M +  C P V  YN +I+   R G   +
Sbjct: 411 NNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEE 470

Query: 223 ARFLLEQMELP-----------GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           AR L  +ME+            G     D  +   L+   C+ G           ++ +A
Sbjct: 471 ARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSG-----------QVLKA 519

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             L R ++  G VPDVV YN LI+G CK   ++ A+ LF ++  KG  P+ +TY + I  
Sbjct: 520 YKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDG 579

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
               +  + A+ + + +   +   P+ S Y  ++ +LC   ++ +A +   +      +P
Sbjct: 580 LLRAHRENDAMMLFQNILQ-SGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDY-----LP 633

Query: 392 REYTYKLVCDALNAAE---EPSLLDDGLRKRIRDGIEYRF 428
           ++Y + +  + L  A    E   LDDG+R+ I+   EY +
Sbjct: 634 KKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYGY 673



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 27/252 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L ++G+  +AL  F  M      P+V  Y V++++LC  G  ++A  LL  M+  G
Sbjct: 213 LMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKG 272

Query: 235 FRCPPDVYTYTILISSYCKYG------------MQTGCRKAIR------------RRIWE 270
             C PD  TY   +S  CK G               G    ++            RR  E
Sbjct: 273 --CLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDE 330

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
               ++ ML +   PDVV Y  +I GC +  RIE AL   D M KKG +P+   YN+ ++
Sbjct: 331 GFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLK 390

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                 ++++A  +  +M   N+ V  S++ T +I  LC+ G V EA     E+ + G  
Sbjct: 391 VLCDHGDLERAHTLRSEMLQ-NNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCD 449

Query: 391 PREYTYKLVCDA 402
           P   TY  + D 
Sbjct: 450 PTVMTYNALIDG 461



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 131/325 (40%), Gaps = 94/325 (28%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA--RFLLEQ- 229
           T L+  L   G ++EA+     MK   C PD   YN  ++ LC+VG  N+A  R ++ Q 
Sbjct: 246 TVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQD 305

Query: 230 ----MELPGFRC--------------------------PPDVYTYTILISSYCKYGMQTG 259
               + L G+ C                           PDV  YTI+I          G
Sbjct: 306 GGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIR---------G 356

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC--------------------------- 292
           C +A   RI +A     +M  KGFVPD   YN                            
Sbjct: 357 CAEA--GRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLV 414

Query: 293 --------LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
                   +I G CK   ++ A+++FD+M + GC P  +TYN+ I  +     +++A  +
Sbjct: 415 LDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARML 474

Query: 345 MRKMQNLN------------HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             KM+  N            + V  S S   ++H +C++G+VL+A   L  ++D G VP 
Sbjct: 475 FHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPD 534

Query: 393 EYTYKLVCDALNAAEEPSLLDDGLR 417
             TY  + + L  A     LD  +R
Sbjct: 535 VVTYNTLINGLCKARN---LDGAVR 556


>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
          Length = 802

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 155/355 (43%), Gaps = 49/355 (13%)

Query: 51  VLKSIP-------RFFFQSP-------RSIGRQTGFRHRTPLRQRILKKEAYNIANNVLV 96
           VLKSIP       RF  +         R +GR  G      LR     K    + N +  
Sbjct: 118 VLKSIPQSREEAGRFDVEEDESRHPLVREVGRLIG------LRSSWNPKHEGQMRNLLRS 171

Query: 97  LGPAAY------RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKG 150
           L P+        +D ++V L      +F++W +R + + H+ M    M  V ++    +G
Sbjct: 172 LKPSQVCAVLRSQDDERVAL------KFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQG 225

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
               L  M RRG     T  + + ++      G + +AL     M++    P++   N  
Sbjct: 226 SRRVLVLMKRRGIYR--TPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTT 283

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           I+   R     KA   LE+M++ G    P+V TY  +I  YC              R+ E
Sbjct: 284 IDVFVRANRLEKALRFLERMQVVGI--VPNVVTYNCMIRGYCDL-----------HRVEE 330

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK-GCIPNRVTYNSFI 329
           A  L   M  KG +PD V+Y  ++   CK  RI    +L   M K+ G +P++VTYN+ I
Sbjct: 331 AIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLI 390

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
              +  +  D+A+  ++  Q     +     Y+ I+HALC+ GR+ EA+D + E+
Sbjct: 391 HMLTKHDHADEALWFLKDAQEKGFRI-DKLGYSAIVHALCKEGRMSEAKDLINEM 444



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 126/275 (45%), Gaps = 33/275 (12%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           + LW FLKD   +G    +     + ++  L +EG ++EA      M    C PDV  Y 
Sbjct: 401 EALW-FLKDAQEKGF--RIDKLGYSAIVHALCKEGRMSEAKDLINEMD---CPPDVVTYT 454

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK------ 262
            V+N  CR+G  +KA+ LL+ M   G +  P+  +YT L++  C+ G     R+      
Sbjct: 455 AVVNGFCRLGEVDKAKKLLQVMHTHGHK--PNTVSYTALLNGMCRTGKSLEAREMMNMSE 512

Query: 263 ----------------AIRR--RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
                            +RR  ++ EA  + R M+ KGF P  V  N L+   C+  R  
Sbjct: 513 EHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTH 572

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A +  ++   KGC  N V + + I  +   +E+D A+ ++  M  +N       +YT +
Sbjct: 573 EARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADV-FTYTTL 631

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           +  L + GR+ EA + + +++  G  P   TY+ V
Sbjct: 632 VDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTV 666



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 136/286 (47%), Gaps = 34/286 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  IV  R        D +K M++  +G +    +   LI +L +    +EAL     
Sbjct: 358 CKEKRIVEVR--------DLMKKMAKE-HGLVPDQVTYNTLIHMLTKHDHADEALWFLKD 408

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
            ++   R D   Y+ +++ALC+ G  ++A+ L+ +M+     CPPDV TYT +++ +C+ 
Sbjct: 409 AQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMD-----CPPDVVTYTAVVNGFCRL 463

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G            + +A  L ++M   G  P+ V+Y  L++G C+T +   A E+ +   
Sbjct: 464 G-----------EVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSE 512

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           +    PN +TY+  +       ++ +A +++R+M  L    P       ++ +LC  GR 
Sbjct: 513 EHWWSPNSITYSVIMHGLRREGKLSEACDVVREMV-LKGFFPGPVEINLLLQSLCRDGRT 571

Query: 375 LEARDFLAELVDGGSVPREYTYKLVC------DALNAAEEPSLLDD 414
            EAR F+ E ++ G       +  V       D L+AA   S+LDD
Sbjct: 572 HEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAA--LSVLDD 615



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 128/293 (43%), Gaps = 18/293 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           N + C     VF R N ++    FL+ M   G    V T    C+I+   +   V EA+ 
Sbjct: 276 NLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVT--YNCMIRGYCDLHRVEEAIE 333

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
               M    C PD  +Y  ++  LC+     + R L+++M        PD  TY  LI  
Sbjct: 334 LLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMA-KEHGLVPDQVTYNTLIHM 392

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
             K+               EA    +    KGF  D + Y+ ++   CK  R+  A +L 
Sbjct: 393 LTKHDHAD-----------EALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLI 441

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
           ++M+   C P+ VTY + +  +  + E+DKA ++++ M    H  P + SYT +++ +C 
Sbjct: 442 NEMD---CPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHK-PNTVSYTALLNGMCR 497

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
            G+ LEAR+ +    +    P   TY ++   L    + S   D +R+ +  G
Sbjct: 498 TGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKG 550



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 91/217 (41%), Gaps = 16/217 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + ++  L  EG ++EA      M      P     N+++ +LCR G  ++AR  +E+   
Sbjct: 524 SVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLN 583

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C  +V  +T +I  +C+              +  A  +   M       DV  Y  
Sbjct: 584 KG--CAINVVNFTTVIHGFCQ-----------NDELDAALSVLDDMYLINKHADVFTYTT 630

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+D   K  RI  A EL   M  KG  P  VTY + I  Y  + ++D  + ++ KM +  
Sbjct: 631 LVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQ 690

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                 + Y  +I  LC  G++ EA   L +++   S
Sbjct: 691 ---KCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTAS 724


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 124/291 (42%), Gaps = 53/291 (18%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           + ++D L D   R  G   ++S+   L+      G   +A+  F RM +F+ RP  + YN
Sbjct: 119 EAMFDALADA--RAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYN 176

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
            ++ AL   G    A  L  +M   G  C P+  TY +L+   CK GM            
Sbjct: 177 TILKALVDSGVILLALALYNRMVAAG--CAPNRATYNVLMDGLCKQGMAG---------- 224

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +A  +F  ML +G +P+V  Y  L+   C   +I+ A++L   M  KGC+P+ VTYN+F
Sbjct: 225 -DALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAF 283

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGV--------------------------------- 355
           +     V  +++A + +  +Q+    +                                 
Sbjct: 284 LSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNI 343

Query: 356 -PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCD 401
            P    YT +I    EAGR+ +A  FL  +   G VP  + Y    K++CD
Sbjct: 344 SPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCD 394



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 132/280 (47%), Gaps = 31/280 (11%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           N  ++ +++ T +I  L + GLV+EA+  F  M +  C P V  YN +I+   R G   +
Sbjct: 411 NNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEE 470

Query: 223 ARFLLEQMELP-----------GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           AR L  +ME+            G     D  +   L+   C+ G           ++ +A
Sbjct: 471 ARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSG-----------QVLKA 519

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             L R ++  G VPDVV YN LI+G CK   ++ A+ LF ++  KG  P+ +TY + I  
Sbjct: 520 YKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDG 579

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
               +  + A+ + + +   +   P+ S Y  ++ +LC   ++ +A +   +      +P
Sbjct: 580 LLRAHRENDAMMLFQNILQ-SGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDY-----LP 633

Query: 392 REYTYKLVCDALNAAE---EPSLLDDGLRKRIRDGIEYRF 428
           ++Y + +  + L  A    E   LDDG+R+ I+   EY +
Sbjct: 634 KKYNFPVESEVLANAHKEIEDGSLDDGVRELIKIDQEYGY 673



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 27/252 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L ++G+  +AL  F  M      P+V  Y V++++LC  G  ++A  LL  M+  G
Sbjct: 213 LMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKG 272

Query: 235 FRCPPDVYTYTILISSYCKYG------------MQTGCRKAIR------------RRIWE 270
             C PD  TY   +S  CK G               G    ++            RR  E
Sbjct: 273 --CLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDE 330

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
               ++ ML +   PDVV Y  +I GC +  RIE AL   D M KKG +P+   YN+ ++
Sbjct: 331 GFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLK 390

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                 ++++A  +  +M   N+ V  S++ T +I  LC+ G V EA     E+ + G  
Sbjct: 391 VLCDHGDLERAHTLRSEMLQ-NNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCD 449

Query: 391 PREYTYKLVCDA 402
           P   TY  + D 
Sbjct: 450 PTVMTYNALIDG 461



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 131/325 (40%), Gaps = 94/325 (28%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA--RFLLEQ- 229
           T L+  L   G ++EA+     MK   C PD   YN  ++ LC+VG  N+A  R ++ Q 
Sbjct: 246 TVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQD 305

Query: 230 ----MELPGFRC--------------------------PPDVYTYTILISSYCKYGMQTG 259
               + L G+ C                           PDV  YTI+I          G
Sbjct: 306 GGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIR---------G 356

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC--------------------------- 292
           C +A   RI +A     +M  KGFVPD   YN                            
Sbjct: 357 CAEA--GRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLV 414

Query: 293 --------LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
                   +I G CK   ++ A+++FD+M + GC P  +TYN+ I  +     +++A  +
Sbjct: 415 LDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARML 474

Query: 345 MRKMQNLN------------HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             KM+  N            + V  S S   ++H +C++G+VL+A   L  ++D G VP 
Sbjct: 475 FHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPD 534

Query: 393 EYTYKLVCDALNAAEEPSLLDDGLR 417
             TY  + + L  A     LD  +R
Sbjct: 535 VVTYNTLINGLCKARN---LDGAVR 556


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 32/240 (13%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           +  M + + +P+V+ +NVVINALC+ G  NKAR ++E M++ G+   P+V +Y  LI  Y
Sbjct: 211 YKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGY--SPNVVSYNTLIDGY 268

Query: 252 CKYGMQTGCRKA---------------------IRRRIWEANHL------FRLMLFKGFV 284
           CK G      KA                     +    W+ ++L      F+ ML +  +
Sbjct: 269 CKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVI 328

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+V+ YN LI+G C   +I  A+ + D M   G  PN +TY+S I  +     + +A++M
Sbjct: 329 PNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDM 388

Query: 345 MRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              ++    G  PT+  Y  +I A C+ G++ +      E+   G VP   TY  +   L
Sbjct: 389 FDSVK--GQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGL 446



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 108/225 (48%), Gaps = 14/225 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G++ EAL  F  +K    RP    YN++I+A C++G  +    L E+ME  G
Sbjct: 372 LINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREG 431

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDV TY  LI+  C+ G            I  A  LF  +  KG +PD+V ++ L+
Sbjct: 432 I--VPDVGTYNCLIAGLCRNG-----------NIEAAKKLFDQLTNKG-LPDLVTFHILM 477

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G C      +A  L  +M+K G  P  +TYN  ++ Y     +  A  M  +M+     
Sbjct: 478 EGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRL 537

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
               +SY  ++    + G++ +A   L E+++ G VP   TY++V
Sbjct: 538 RMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 28/192 (14%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           S +G G   TT     LI    + G +++  A    M++    PDV  YN +I  LCR G
Sbjct: 391 SVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNG 450

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR---KAIRRRIWEANHLF 275
           N   A+ L +Q+   G    PD+ T+ IL+  YC  G         K + +   +  HL 
Sbjct: 451 NIEAAKKLFDQLTNKGL---PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLT 507

Query: 276 RLMLFKGFVPD----------------------VVAYNCLIDGCCKTYRIERALELFDDM 313
             ++ KG+  +                      V +YN L+ G  +  ++E A  L ++M
Sbjct: 508 YNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEM 567

Query: 314 NKKGCIPNRVTY 325
            +KG +PNR+TY
Sbjct: 568 LEKGLVPNRITY 579



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 71/142 (50%), Gaps = 4/142 (2%)

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           + R  +  +L++ M+ +   P+V  +N +I+  CKT ++ +A ++ +DM   G  PN V+
Sbjct: 201 QNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVS 260

Query: 325 YNSFIRYYSVV---NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           YN+ I  Y  +    ++ KA  ++++M   N   P  +++  +I    +   +  +    
Sbjct: 261 YNTLIDGYCKLGGNGKMYKADAVLKEMVE-NEVSPNLTTFNILIDGFWKDDNLPGSLKVF 319

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E++D   +P   TY  + + L
Sbjct: 320 KEMLDQDVIPNVITYNSLINGL 341


>gi|356574876|ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Glycine max]
          Length = 589

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 115/244 (47%), Gaps = 19/244 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S T LI+    +GLV+EA  T  +M      PD   YN+VI  LC+ G    A  L+E M
Sbjct: 167 SCTNLIRGFIRKGLVDEACKTLNKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDM 226

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            L G  C PD  TY  +I      G              +A + +R  L KG  P ++ Y
Sbjct: 227 SLSG--CSPDAITYNSIIRCLFDKG-----------NFNQAVNFWRDQLRKGCPPYLITY 273

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI+  CK     RALE+ +DM  +GC P+ VTYNS +   S   + +    ++  +  
Sbjct: 274 TVLIELVCKYCGAARALEVLEDMAMEGCYPDIVTYNSLVNLTSKQGKYEDTALVILNL-- 331

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
           L+HG+ P + +Y  +IH+L   G   E  D L  + +  S P   TY ++   LN   + 
Sbjct: 332 LSHGMQPNAVTYNTLIHSLINHGYWDEVDDILKIMNETSSPPTHVTYNIL---LNGLCKS 388

Query: 410 SLLD 413
            LLD
Sbjct: 389 GLLD 392



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 116/264 (43%), Gaps = 22/264 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L   G  +E       M +    P    YN+++N LC+ G  ++A      M    
Sbjct: 346 LIHSLINHGYWDEVDDILKIMNETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTE- 404

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD+ TY  L+S  CK G            I E   L  L++     P +V YN +I
Sbjct: 405 -NCSPDIITYNTLLSGLCKEGF-----------IDEGIQLLNLLVGTSCSPGLVTYNIVI 452

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  +   +E A EL+D+M  KG IP+ +T++S    +   +++++A E++++M      
Sbjct: 453 DGLARLGSMESAKELYDEMVDKGIIPDEITHSSLTWGFCRADQLEEATELLKEMSMKEQR 512

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDD 414
           +  +++Y  +I  LC   +V  A   L  +V G   P E  Y  +  A        + D 
Sbjct: 513 IK-NTAYRCVILGLCRQKKVDIAIQVLDLMVKGQCNPDERIYSALIKA--------VADG 563

Query: 415 GLRKRIRDGIEYRFRQVMKVKPIM 438
           G+ K   D  +   +  +  K IM
Sbjct: 564 GMLKEANDLHQTLIKWKILKKEIM 587



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 29/261 (11%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G +  T +   +I  L + G +  AL     M    C PD   YN +I  L   GNFN+
Sbjct: 194 SGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCLFDKGNFNQ 253

Query: 223 A-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           A  F  +Q+      CPP + TYT+LI   CKY    G  +A+         +   M  +
Sbjct: 254 AVNFWRDQLRKG---CPPYLITYTVLIELVCKY---CGAARALE--------VLEDMAME 299

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN----- 336
           G  PD+V YN L++   K  + E    +  ++   G  PN VTYN+ I  +S++N     
Sbjct: 300 GCYPDIVTYNSLVNLTSKQGKYEDTALVILNLLSHGMQPNAVTYNTLI--HSLINHGYWD 357

Query: 337 EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           E+D  +++M    N     PT  +Y  +++ LC++G +  A  F + +V     P   TY
Sbjct: 358 EVDDILKIM----NETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITY 413

Query: 397 KLVCDALNAAEEPSLLDDGLR 417
             +   L+   +   +D+G++
Sbjct: 414 NTL---LSGLCKEGFIDEGIQ 431



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 87/199 (43%), Gaps = 24/199 (12%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQM----ELPGFRCPPDVYTYTILISSYCKYGMQT 258
           D    N ++  LC  G    A  L++ M    ++P F       + T LI  + + G+  
Sbjct: 129 DEMTNNEILQRLCSRGKLTVAARLIDVMARKSQIPHFP------SCTNLIRGFIRKGL-- 180

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                    + EA      M+  G VPD + YN +I G CK  R+  AL+L +DM+  GC
Sbjct: 181 ---------VDEACKTLNKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGC 231

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEA 377
            P+ +TYNS IR        ++A+   R    L  G P    +YT +I  +C+      A
Sbjct: 232 SPDAITYNSIIRCLFDKGNFNQAVNFWR--DQLRKGCPPYLITYTVLIELVCKYCGAARA 289

Query: 378 RDFLAELVDGGSVPREYTY 396
            + L ++   G  P   TY
Sbjct: 290 LEVLEDMAMEGCYPDIVTY 308


>gi|222619024|gb|EEE55156.1| hypothetical protein OsJ_02962 [Oryza sativa Japonica Group]
          Length = 428

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 120/240 (50%), Gaps = 20/240 (8%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLV--NEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           R  G   TT++   L+K    +  V  ++A+  F  +     +PD  +YN VI+ LCR G
Sbjct: 2   RAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIP----KPDACSYNTVIDGLCRRG 57

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
              +AR L  +M   G    P V TYT LI     +  +  C         +A  LF  M
Sbjct: 58  RLPEARDLFAEMIANG--TAPTVVTYTTLI----HWLAREACFD-------DALKLFDEM 104

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
             +G +P+VV Y+ LIDG CK  R   A+EL D M K+  +PN +TY+S I        +
Sbjct: 105 ARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCKEGCL 164

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
            +A+E++ +M+ L    P +  +  +I  LC+AGR LEA ++L E+   G  P   T+ L
Sbjct: 165 GQAMEILDRMR-LQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNRLTWSL 223



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 18/175 (10%)

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M   GF   P   TY +L+ ++C               I +A  +FR +      PD  +
Sbjct: 1   MRAAGF--APTTATYNVLVKAHCSDAAVP---------IDDAVRVFRNIP----KPDACS 45

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN +IDG C+  R+  A +LF +M   G  P  VTY + I + +     D A+++  +M 
Sbjct: 46  YNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFDEMA 105

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
               G+ P   +Y+ +I  LC+ GR   A + L  +V    +P   TY  V D L
Sbjct: 106 R--RGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGL 158



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 27/234 (11%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +L  T + + +I  L +EG + +A+    RM+    +PD   +  +I  LC  G   +A 
Sbjct: 144 KLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEAS 203

Query: 225 FLLEQMELPGFRCPPDVYTYTI-------LISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
             L++M   G R  P+  T+++       ++++ C  G            +  A  +++ 
Sbjct: 204 NYLDEMNFAGIR--PNRLTWSLHGRINDAVVTALCSKG-----------EVVRAFQVYQS 250

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M  +G       ++ L++   K   +E+A  +  DM  + CIP R T+++ +R Y     
Sbjct: 251 MRTRGISTKPTTFHLLVECLSKKNNLEKAAHVVRDMLSERCIPERETWDTIVRAYWS--- 307

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPI-IHAL--CEAGRVLEARDFLAELVDGG 388
             K +  +  +Q  NH   +++  + I IHA   C A   + AR++    V  G
Sbjct: 308 -KKKLRAVGSVQEYNHEKKSTAKISSIEIHATGPCAAVAKVGARNWKTGTVSEG 360


>gi|356555026|ref|XP_003545840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Glycine max]
          Length = 587

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 113/216 (52%), Gaps = 20/216 (9%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+  L ++G+ +     + RM Q    P++Y YN + +A  + G+  +A  LL +M++
Sbjct: 165 TVLLNSLLKDGVTHMVWKIYKRMVQVGVVPNIYIYNCLFHACSKSGDVERAEQLLNEMDV 224

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G     D++TY  L+S YCK GM            +EA  +   M  +G   D+V+YN 
Sbjct: 225 KGV--LQDIFTYNTLLSLYCKKGMH-----------YEALSIQNRMEREGINLDIVSYNS 271

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ--N 350
           LI G CK  R+  A+ +F ++  K   PN VTY + I  Y   NE+++A++M + M+   
Sbjct: 272 LIYGFCKEGRMREAMRMFSEI--KNATPNHVTYTTLIDGYCKTNELEEALKMCKLMEAKG 329

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           L  GV T   Y  I+  LC+ GR+ +A   L E+ +
Sbjct: 330 LYPGVVT---YNSILRKLCQDGRIRDANKLLNEMSE 362



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 125/263 (47%), Gaps = 20/263 (7%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           ++  +V+     L +M  +G  + + T +   L+ +  ++G+  EAL+   RM++     
Sbjct: 207 SKSGDVERAEQLLNEMDVKGVLQDIFTYNT--LLSLYCKKGMHYEALSIQNRMEREGINL 264

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D+ +YN +I   C+ G   +A  +  +++       P+  TYT LI  YCK         
Sbjct: 265 DIVSYNSLIYGFCKEGRMREAMRMFSEIK----NATPNHVTYTTLIDGYCK--------- 311

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                + EA  + +LM  KG  P VV YN ++   C+  RI  A +L ++M+++    + 
Sbjct: 312 --TNELEEALKMCKLMEAKGLYPGVVTYNSILRKLCQDGRIRDANKLLNEMSERKLQADN 369

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           +T N+ I  Y  + ++  A++   KM  L  G+ P   +Y  +IH  C+   +  A++ +
Sbjct: 370 ITCNTLINAYCKIGDLKSALKFKNKM--LEAGLKPDPFTYKALIHGFCKTNELESAKELM 427

Query: 382 AELVDGGSVPREYTYKLVCDALN 404
             ++D G  P   TY  + D  N
Sbjct: 428 FSMLDAGFTPSYCTYSWIVDGYN 450



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 95/193 (49%), Gaps = 21/193 (10%)

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           + EQM L   +  P ++  T+L++S  K G        +   +W+   +++ M+  G VP
Sbjct: 148 VFEQMRLHEVK--PHLHACTVLLNSLLKDG--------VTHMVWK---IYKRMVQVGVVP 194

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           ++  YNCL   C K+  +ERA +L ++M+ KG + +  TYN+ +  Y       +A+ + 
Sbjct: 195 NIYIYNCLFHACSKSGDVERAEQLLNEMDVKGVLQDIFTYNTLLSLYCKKGMHYEALSIQ 254

Query: 346 RKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
            +M+    G+     SY  +I+  C+ GR+ EA    +E+ +  + P   TY  + D   
Sbjct: 255 NRME--REGINLDIVSYNSLIYGFCKEGRMREAMRMFSEIKN--ATPNHVTYTTLIDGYC 310

Query: 405 AAEEPSLLDDGLR 417
              E   L++ L+
Sbjct: 311 KTNE---LEEALK 320



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 20/253 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    +   + EAL     M+     P V  YN ++  LC+ G    A  LL +M  
Sbjct: 303 TTLIDGYCKTNELEEALKMCKLMEAKGLYPGVVTYNSILRKLCQDGRIRDANKLLNEM-- 360

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +   D  T   LI++YCK G     + A++ +          ML  G  PD   Y  
Sbjct: 361 SERKLQADNITCNTLINAYCKIG---DLKSALKFK--------NKMLEAGLKPDPFTYKA 409

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI G CKT  +E A EL   M   G  P+  TY+  +  Y+  + +D  + +  +   L+
Sbjct: 410 LIHGFCKTNELESAKELMFSMLDAGFTPSYCTYSWIVDGYNKKDNMDAVLALPDEF--LS 467

Query: 353 HGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAE 407
            G+    S Y  +I + C+  R+  A      +   G       Y  +  A     N + 
Sbjct: 468 RGICLDVSVYRALIRSSCKVERIQCAERLFYHMEGKGISGESVIYTSIAYAYWNVGNVSA 527

Query: 408 EPSLLDDGLRKRI 420
             S+L++  R+R+
Sbjct: 528 ASSMLEEMARRRL 540


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 104/199 (52%), Gaps = 14/199 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--VPNGVTFTTLIDGHCKNG----- 255

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +   PD++ YN LI G CK   +++A  L D+M+ KG  P
Sbjct: 256 ------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKP 309

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +++TY + I       ++D A E  ++M   N  +    +YT +   LC+ GR ++A   
Sbjct: 310 DKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD-EVAYTALXSGLCQEGRSVDAEKM 368

Query: 381 LAELVDGGSVPREYTYKLV 399
           L E++  G  P   TY ++
Sbjct: 369 LREMLSVGLKPDARTYTMI 387



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 105/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 136 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 186 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A 
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAH 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
             + E+   G  P + TY  + D 
Sbjct: 297 HLIDEMSVKGLKPDKITYTTLIDG 320



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 14/187 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 302

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G +  PD  TYT LI   CK G      +  +R I E   L           D VAY
Sbjct: 303 SVKGLK--PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL-----------DEVAY 349

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             L  G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ 
Sbjct: 350 TALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQR 409

Query: 351 LNHGVPT 357
             H VP+
Sbjct: 410 DGH-VPS 415



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 27/189 (14%)

Query: 239 PDVYTYTILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GF 283
            D+Y ++ LI++Y + G       C +  R  + W           HL +L  FK   GF
Sbjct: 64  SDJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 123

Query: 284 VPDVVA---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
             +++          +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  
Sbjct: 124 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 183

Query: 335 VNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           + ++D+   +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G VP  
Sbjct: 184 LGDLDEGFRLKSAM--LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNG 241

Query: 394 YTYKLVCDA 402
            T+  + D 
Sbjct: 242 VTFTTLIDG 250


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 19/260 (7%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG V  A+     M+ F C P+  +YNV++N L   G F++A+ L+EQM + G +    
Sbjct: 219 KEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKV--S 276

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
            +TY  LI  +CK  M             EAN L R ML +G +P VV YN ++   C+ 
Sbjct: 277 AHTYNPLIRGFCKKEM-----------FEEANDLRREMLGRGALPTVVTYNTIMYSLCRL 325

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R+  A    D M  +  +P+ V+YN+ I  YS +    +A+ +  ++++ N  VP+  +
Sbjct: 326 GRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNL-VPSVVT 384

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGL 416
           Y  +I   C  G +  A+    +++  G  P   T+ ++    C   N      L D+ L
Sbjct: 385 YNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEML 444

Query: 417 RKRIR-DGIEYRFRQVMKVK 435
            + ++ D I Y  R V ++K
Sbjct: 445 SRGLKPDCIAYTTRIVGELK 464



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 21/254 (8%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           KG+ D   DM + G    V T   T L++   + G +  A   F  M     +PD  AY 
Sbjct: 402 KGMKD---DMIKHGLCPDVVT--FTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYT 456

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
             I    ++GN +KA  + E+M+  GF  PPD+ TY +LI+  CK G             
Sbjct: 457 TRIVGELKLGNPSKAFGMKEEMKAEGF--PPDLITYNVLINGLCKLG-----------NF 503

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +AN L + M  +G VPD V Y  +I     +  + +A E+F DM KKG  P+ VTY   
Sbjct: 504 DDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVL 563

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
           I  Y+V   +D A +   +MQ+   GV P   +Y  +I+ LC+   +  A +  AE+   
Sbjct: 564 IHSYAVRGRLDFAKKYFDEMQD--KGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESK 621

Query: 388 GSVPREYTYKLVCD 401
           G  P +YTY ++ +
Sbjct: 622 GVSPNKYTYTILIN 635



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 110/235 (46%), Gaps = 29/235 (12%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EAL  F  ++     P V  YN +I+  CR GN + A+ + + M   G  CP DV T+TI
Sbjct: 365 EALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGL-CP-DVVTFTI 422

Query: 247 LISSYCKYG----------------MQTGCRKAIRRRIWE--------ANHLFRLMLFKG 282
           L+  +C+ G                ++  C     R + E        A  +   M  +G
Sbjct: 423 LVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEG 482

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
           F PD++ YN LI+G CK    + A EL   M  +G +P+ VTY S I  + +   + KA 
Sbjct: 483 FPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAE 542

Query: 343 EMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           E+   M  L  G+ P+  +YT +IH+    GR+  A+ +  E+ D G  P   TY
Sbjct: 543 EVFSDM--LKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITY 595



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 110/228 (48%), Gaps = 22/228 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN--EALATFYRMKQFR 199
           F +  N+    +   +M  RG    +    +    +++GE  L N  +A      MK   
Sbjct: 427 FCQMGNLPMAKELFDEMLSRG----LKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEG 482

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             PD+  YNV+IN LC++GNF+ A  L+++M L G    PD  TYT +I ++   G+   
Sbjct: 483 FPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGI--VPDHVTYTSIIHAHLISGL--- 537

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   + +A  +F  ML KG  P VV Y  LI       R++ A + FD+M  KG  
Sbjct: 538 --------LRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVS 589

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
           PN +TYN+ I      N +D A  +  +M+  + GV P   +YT +I+
Sbjct: 590 PNVITYNALIYGLCKENMMDVAYNLFAEME--SKGVSPNKYTYTILIN 635



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 132/301 (43%), Gaps = 37/301 (12%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVK----------------GLWDFLKDM 158
           A  F+ WVE+  +F  +E     +  + A+   +K                G+ D L  +
Sbjct: 68  ALRFFRWVEKQPNFHRSETAFVAILDILAKNGFMKPAYWVMEKAIEVKVDGGVLDVLVGI 127

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
               N E V+   +  LI+V  ++ ++ + L  FY+M      PDV   N V+  L    
Sbjct: 128 GCGRNSE-VSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKS 186

Query: 219 NFNKARFLLEQMELPGFRCP--PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
             N+   +   M     +C   P + T+  ++ S CK G            +  A  +  
Sbjct: 187 MVNEVEEVYSVM----IKCQIRPTIVTFNTMMDSRCKEG-----------EVGRAVEVLD 231

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
           +M   G  P+ V+YN L++G       +RA EL + M+  G   +  TYN  IR +    
Sbjct: 232 VMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKE 291

Query: 337 EIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
             ++A ++ R+M  L  G +PT  +Y  I+++LC  GRV +AR +L  +V+   +P   +
Sbjct: 292 MFEEANDLRREM--LGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVS 349

Query: 396 Y 396
           Y
Sbjct: 350 Y 350



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 17/158 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           +   DM ++G    V T +V  LI      G ++ A   F  M+     P+V  YN +I 
Sbjct: 543 EVFSDMLKKGIHPSVVTYTV--LIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIY 600

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE-A 271
            LC+    + A  L  +ME  G    P+ YTYTILI+                 + W+ A
Sbjct: 601 GLCKENMMDVAYNLFAEMESKG--VSPNKYTYTILINENSNL------------QYWQDA 646

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
             L++ ML +   PD   ++ L+    K Y++   L L
Sbjct: 647 LKLYKDMLDREIKPDSCTHSALMKHLSKDYKLLAVLRL 684


>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
 gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
          Length = 484

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 129/290 (44%), Gaps = 32/290 (11%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           W +L  M   G    VT  +V  ++K   + G V  AL  F +M +  C+P+V  YN VI
Sbjct: 99  WRYLGYMRSLGIPPDVTAYNV--VLKGYCDLGRVGRALIKFGKMGK-TCKPNVATYNTVI 155

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK------------------ 253
           N LC+ G  + A  L  +  LP     PD +TY+ L+   C+                  
Sbjct: 156 NGLCKFGKIDWAVHLFTR--LPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEAN 213

Query: 254 YGMQTGCRKAI------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK-TYRIERA 306
           Y    G   A+       RR+ EA  + + M+ +G  P VV YNC+I+G C+   RIE A
Sbjct: 214 YDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNCIINGVCQYKNRIEEA 273

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
             LF  M    C PN VTY + I   S + E+ + +E+ + M       P   +Y  +I+
Sbjct: 274 YRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLS-PDGYAYHSLIY 332

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
           A  +  ++ EA+  L +       P  Y Y  +      A +P  +D+ L
Sbjct: 333 AFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPR-VDEAL 381



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 106/256 (41%), Gaps = 19/256 (7%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           D S +  G        T L+  L       EA+  F R     CRP +Y++ ++I   C 
Sbjct: 32  DWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFCN 91

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
           V N  +A   L  M   G   PPDV  Y +++  YC  G           R+  A   F 
Sbjct: 92  VRNPGRAWRYLGYMRSLGI--PPDVTAYNVVLKGYCDLG-----------RVGRALIKFG 138

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M  K   P+V  YN +I+G CK  +I+ A+ LF  +      P+  TY++ +       
Sbjct: 139 KM-GKTCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAE 197

Query: 337 EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            ++ AI++   M   N+    + +Y  +    C+  RV EA + L  ++  G  P   TY
Sbjct: 198 RLEAAIKVYDMMLEANYD-GDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTY 256

Query: 397 KL----VCDALNAAEE 408
                 VC   N  EE
Sbjct: 257 NCIINGVCQYKNRIEE 272



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 13/158 (8%)

Query: 170 SSVTCLIKVLGEEGL--VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           ++VT    +LG   +  V   L  F  M +    PD YAY+ +I A  +V   ++A+ +L
Sbjct: 288 NAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSIL 347

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           +  +       PDVY YT LIS YC+         A + R+ EA  LF+ M  +   P+V
Sbjct: 348 Q--DAARNHVGPDVYMYTTLISGYCR---------ARKPRVDEALLLFQNMKDRRVWPNV 396

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           + YN ++ G CKT R + A ++F +M K  C PNR+T+
Sbjct: 397 ITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTF 434


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 14/199 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 190 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--VPNGVTFTTLIDGHCKNG----- 242

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +   PD++ YN LI G CK   +++A  L D+M+ K   P
Sbjct: 243 ------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKP 296

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +++TY + I       ++D A E  ++M   N  +    +YT +I  LC+ GR ++A   
Sbjct: 297 DKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD-EVAYTALISGLCQEGRSVDAEKM 355

Query: 381 LAELVDGGSVPREYTYKLV 399
           L E+++ G  P   TY ++
Sbjct: 356 LREMLNVGLKPDSRTYTMI 374



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 123 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 172

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 173 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP 226

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A 
Sbjct: 227 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAH 283

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
             + E+      P + TY  + D 
Sbjct: 284 HLIDEMSMKELKPDKITYTTLIDG 307



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 14/197 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEM 289

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            +   +  PD  TYT LI   CK G      +  +R I E   L           D VAY
Sbjct: 290 SMKELK--PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL-----------DEVAY 336

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ 
Sbjct: 337 TALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQR 396

Query: 351 LNHGVPTSSSYTPIIHA 367
             H VP+  +Y  +++ 
Sbjct: 397 DGH-VPSVVTYNVLMNG 412



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 27/189 (14%)

Query: 239 PDVYTYTILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GF 283
            D+Y ++ LI++Y + G       C +  R  + W           HL +L  FK   GF
Sbjct: 51  SDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 110

Query: 284 VPDVVA---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
             +++          +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  
Sbjct: 111 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 170

Query: 335 VNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           + ++D+   +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G VP  
Sbjct: 171 LGDLDEGFRLKSAM--LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNG 228

Query: 394 YTYKLVCDA 402
            T+  + D 
Sbjct: 229 VTFTTLIDG 237


>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
          Length = 567

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 137/305 (44%), Gaps = 37/305 (12%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           ++ LIK  G+ G V  A+  F++ KQ      +Y+YN ++  L RV +   A     Q+ 
Sbjct: 126 ISKLIKAYGDRGNVKAAIFWFHQAKQIENGACLYSYNSLLGVLVRVNSIKLAEEFFHQIV 185

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF-------- 283
                 PPDV TYT +I  YCK GM    +K       + N L    +  GF        
Sbjct: 186 KENV-VPPDVSTYTTMIRGYCKMGMIENAKKVFDVMTVKPNLLAYNTMINGFCKKGDMES 244

Query: 284 --------------VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
                         +P+ V Y  LIDG CK   +E A +  ++M  +GC PN +TYN+ I
Sbjct: 245 ARLVFDRMMSGEDCLPNHVTYTTLIDGYCKKGELEEAKKCMNEMMNRGCRPNELTYNAMI 304

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
               +   +D+A  +M KM+ LN      S++  ++  LC  G+  +A  +L  +++   
Sbjct: 305 YGLCINGRVDEAKMLMAKMR-LNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANM 363

Query: 390 VPREYTYKLV----CDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLK 445
            P   +Y++V    C    + E  SLL + +R R      + F  V ++        L++
Sbjct: 364 NPDVKSYEVVINGFCKIGKSDEAISLLKE-MRARGLKPTVFSFNAVFRI--------LVE 414

Query: 446 CGEID 450
            GE+D
Sbjct: 415 NGELD 419



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 128/308 (41%), Gaps = 66/308 (21%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V  R N++K   +F   + +  N      S+ T +I+   + G++  A   F  M     
Sbjct: 167 VLVRVNSIKLAEEFFHQIVKE-NVVPPDVSTYTTMIRGYCKMGMIENAKKVFDVMT---V 222

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----- 255
           +P++ AYN +IN  C+ G+   AR + ++M + G  C P+  TYT LI  YCK G     
Sbjct: 223 KPNLLAYNTMINGFCKKGDMESARLVFDRM-MSGEDCLPNHVTYTTLIDGYCKKGELEEA 281

Query: 256 -------MQTGCRK------------AIRRRIWEANHLFRLMLFKGFV------------ 284
                  M  GCR              I  R+ EA  L   M   GF             
Sbjct: 282 KKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRLNGFKDNVSTHKSMLKG 341

Query: 285 -----------------------PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                                  PDV +Y  +I+G CK  + + A+ L  +M  +G  P 
Sbjct: 342 LCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPT 401

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLEARDF 380
             ++N+  R      E+D+AI ++++M  ++  +P   SY  II  LC A GR+ +  D 
Sbjct: 402 VFSFNAVFRILVENGELDRAILLLKQMPQMD-CLPNFVSYNTIICGLCMAKGRMQDVEDL 460

Query: 381 LAELVDGG 388
           +  ++  G
Sbjct: 461 VDRMIRSG 468



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 105/280 (37%), Gaps = 85/280 (30%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    ++G + EA      M    CRP+   YN +I  LC  G  ++A+ L+ +M L
Sbjct: 266 TTLIDGYCKKGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEAKMLMAKMRL 325

Query: 233 PGFR---------------------------------CPPDVYTYTILISSYCKYGMQTG 259
            GF+                                   PDV +Y ++I+ +CK G    
Sbjct: 326 NGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSD- 384

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                     EA  L + M  +G  P V ++N +     +   ++RA+ L   M +  C+
Sbjct: 385 ----------EAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCL 434

Query: 320 PNRVTYNSFI--------RYYSVVNEIDKAIEMMRKMQNLN------------------- 352
           PN V+YN+ I        R   V + +D+   M+R   NL+                   
Sbjct: 435 PNFVSYNTIICGLCMAKGRMQDVEDLVDR---MIRSGHNLDFTMYSCLLKGYCEEGNVEN 491

Query: 353 -----HGVPTS------SSYTPIIHALCEAGRVLEARDFL 381
                H + T        S++ ++  LC  G+V EA    
Sbjct: 492 VMQIAHEMVTKKYVIGLESFSVLVKQLCAKGKVTEAEKLF 531


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 114/226 (50%), Gaps = 15/226 (6%)

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           V  +I +LG+EG V+ A +    + +    PDVYAY  +I A    G + +A  + ++ME
Sbjct: 1   VAVIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKME 60

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EANHLFRLMLFKGFVPDVVAY 290
             G  C P + TY ++++ Y K GM            W +   LF  M   G +PD   Y
Sbjct: 61  EEG--CKPTLITYNVILNVYGKMGMP-----------WNKITGLFEGMKNAGILPDEYTY 107

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI  C +    E A  +F+DM   G +P++VTYN+ +  Y     I +AIE++R+M+ 
Sbjct: 108 NTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREME- 166

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +N   P+  +Y  +I A    G + EA +   ++V+ G     +TY
Sbjct: 167 VNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTY 212



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 13/183 (7%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           S++  +I + G   +V +       MK+    P +  YN ++    +  NF ++  +L++
Sbjct: 455 STLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKE 514

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           +   G +  PD+ +Y  +I +YC+ G           R+ EA+H+F  M   G +PDV+ 
Sbjct: 515 ILAKGIK--PDIISYNTVIFAYCRNG-----------RMKEASHIFSEMRESGLIPDVIT 561

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN  +         E A+++   M K GC PN+ TYNS I  Y  +N  D AI+ +  + 
Sbjct: 562 YNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFISSLH 621

Query: 350 NLN 352
            L+
Sbjct: 622 ELD 624



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 112/259 (43%), Gaps = 23/259 (8%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N + GL++ +K+      G L    +   LI       L  EA A F  MK     PD  
Sbjct: 86  NKITGLFEGMKNA-----GILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKV 140

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            YN +++   +     +A  +L +ME+ G  C P + TY  LIS+Y + G+         
Sbjct: 141 TYNTLLDVYGKSRRIKEAIEVLREMEVNG--CSPSIVTYNSLISAYARDGL--------- 189

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             + EA  L   M+ +G   DV  Y  ++ G  +T + E A+ +F++M   GC PN  T+
Sbjct: 190 --LEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTF 247

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNH--GVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           N+ I+ +       K  EMM+  + +     VP   ++  ++    + G   E      E
Sbjct: 248 NALIKMHG---NRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKE 304

Query: 384 LVDGGSVPREYTYKLVCDA 402
           +   G VP   TY  +  A
Sbjct: 305 MKRVGFVPERDTYNTLISA 323



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 109/248 (43%), Gaps = 31/248 (12%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI      G  ++A+A + RM      PD+  YN V+ AL R G + ++  +L +M+   
Sbjct: 320 LISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQ--D 377

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI-------------------------W 269
             C P+  T+  L+ +Y   G + G   A+   I                          
Sbjct: 378 GMCKPNELTHCSLLHAYAN-GKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLL 436

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA   F  +  KGF PD+   N +I    +   + +  E+ + M + G  P+  TYNS +
Sbjct: 437 EAERAFLELKRKGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLM 496

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             +S     +++ E+++++  L  G+ P   SY  +I A C  GR+ EA    +E+ + G
Sbjct: 497 YMHSQSENFERSEEVLKEI--LAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESG 554

Query: 389 SVPREYTY 396
            +P   TY
Sbjct: 555 LIPDVITY 562



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 13/174 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK+ G  G   E +  F  +K   C PD+  +N ++    + G  ++   + ++M+  G
Sbjct: 250 LIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVG 309

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F   P+  TY  LIS+Y + G              +A  +++ ML  G  PD+  YN ++
Sbjct: 310 F--VPERDTYNTLISAYSRCG-----------SFDQAMAMYKRMLDTGITPDLSTYNAVL 356

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
               +    E++ ++  +M    C PN +T+ S +  Y+   EI + + +  ++
Sbjct: 357 AALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEI 410



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 23/150 (15%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV----NE 337
           GF PDV AY  LI  C    R   A+ +F  M ++GC P  +TYN  +  Y  +    N+
Sbjct: 28  GFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNK 87

Query: 338 IDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVL-EARDFLAELVDGGSVPREYT 395
           I    E M+     N G+ P   +Y  +I   C  G +  EA     ++   G VP + T
Sbjct: 88  ITGLFEGMK-----NAGILPDEYTYNTLI-TCCRRGSLYEEAAAVFEDMKSMGFVPDKVT 141

Query: 396 YKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           Y  + D             G  +RI++ IE
Sbjct: 142 YNTLLDVY-----------GKSRRIKEAIE 160


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 115/253 (45%), Gaps = 37/253 (14%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
            ++ +++EA+  F +M+Q    P V  Y  +I+ALC++G  + A     QM   G    P
Sbjct: 353 AKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGV--TP 410

Query: 240 DVYTYTILISSYCKYG---------------------------MQTGCRKAIRRRIWEAN 272
           D++ ++ L+   C                              M   CR+    R+ EA 
Sbjct: 411 DIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREG---RVMEAQ 467

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L  LML     PDV++YN L+DG C T RI+ A +L D M   G  P+  TYN+ +  Y
Sbjct: 468 RLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGY 527

Query: 333 SVVNEIDKAIEMMRK--MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                ID A  + R+  M+ L  GV T   Y  I+H L + GR  EA++    +++    
Sbjct: 528 CKARRIDDAYSLFREMLMKGLTPGVVT---YNTILHGLFQIGRFCEAKELYLNMINNRRK 584

Query: 391 PREYTYKLVCDAL 403
              YTY ++ + L
Sbjct: 585 CDIYTYTIILNGL 597



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 115/237 (48%), Gaps = 24/237 (10%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L  EG V EA      M +   RPDV +YN +++  C  G  ++A  LL+ M   G +  
Sbjct: 457 LCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLK-- 514

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD +TY  L+  YCK            RRI +A  LFR ML KG  P VV YN ++ G  
Sbjct: 515 PDEFTYNTLLHGYCK-----------ARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLF 563

Query: 299 KTYRIERALELFDDM--NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHG 354
           +  R   A EL+ +M  N++ C  +  TY   +      N +D+A +M + +  ++L   
Sbjct: 564 QIGRFCEAKELYLNMINNRRKC--DIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLD 621

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
           + T      +I AL + GR  +A D  A +   G VP   TY+L+  A N  +E SL
Sbjct: 622 IFT---INIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLI--AENLIKEGSL 673



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 110/263 (41%), Gaps = 19/263 (7%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           ++ + T LI      G +    A F   +K      +   +  ++  LC     ++A  +
Sbjct: 91  SSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEATDI 150

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG---F 283
           L +  +P F C  +V +Y IL+   C             +R  EA  L  +M   G    
Sbjct: 151 LLR-RMPEFGCTLNVISYNILLKGLCN-----------EKRAEEALELMHMMADDGDGSH 198

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+VV Y  +IDG CK   ++RA  +F  M  KG  PN  TY   I  Y    +  + ++
Sbjct: 199 TPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVVQ 258

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           M+++M    HG+ P    Y  ++  LC+ GR  EAR+    L+  G  P    Y ++   
Sbjct: 259 MLQEMS--THGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHG 316

Query: 403 LNAAEEPSLLDDGLRKRIRDGIE 425
                  S +   L   +R+G+ 
Sbjct: 317 YATEGALSEMHSFLDLMVRNGVS 339



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 118/282 (41%), Gaps = 34/282 (12%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           +  KG++  + D   R N       + TCLI      G   E +     M     +PD  
Sbjct: 219 DRAKGVFQHMIDKGVRPNNH-----TYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCV 273

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK--- 262
            Y V+++ LC+ G   +AR + + +   G +  P V  Y IL+  Y   G  +       
Sbjct: 274 IYAVLLDYLCKNGRCTEARNIFDSLIRKGIK--PHVTIYGILLHGYATEGALSEMHSFLD 331

Query: 263 ---------------------AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
                                A +  I EA H+F  M  +   P VV Y  LID  CK  
Sbjct: 332 LMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLG 391

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
           R++ A+  F+ M  +G  P+   ++S +     V++ +KA ++    + L+ G+  ++++
Sbjct: 392 RVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLF--FEVLDQGIRLNAAF 449

Query: 362 TPIIHA-LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             I+   LC  GRV+EA+  +  ++     P   +Y  + D 
Sbjct: 450 FNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDG 491



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 19/245 (7%)

Query: 175 LIKVLGEEGLVNEALATFYR-MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+K L +   V+EA     R M +F C  +V +YN+++  LC      +A  L+  M   
Sbjct: 134 LLKGLCDAKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADD 193

Query: 234 GFRC-PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
           G     P+V TYT +I   CK  M           +  A  +F+ M+ KG  P+   Y C
Sbjct: 194 GDGSHTPNVVTYTTVIDGLCKAQM-----------VDRAKGVFQHMIDKGVRPNNHTYTC 242

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI G   T + +  +++  +M+  G  P+ V Y   + Y        +A  +   +  + 
Sbjct: 243 LIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSL--IR 300

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
            G+ P  + Y  ++H     G + E   FL  +V  G  P  + + ++    NA  + ++
Sbjct: 301 KGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIM---FNAYAKKAM 357

Query: 412 LDDGL 416
           +D+ +
Sbjct: 358 IDEAM 362



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 20/225 (8%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYN----VVINALCRVGNFNKARFLLEQMELPGF 235
           G  GL ++AL  F  M  +     V  +N    VV  A C   +          +     
Sbjct: 28  GSLGL-DDALKLFDEMLTYARPASVRTFNRLLTVVSRARCSSASELVVSLFNRMIRECSV 86

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF-VPDVVAYNCLI 294
           +  P   TYTILI  +C+ G           R+      F L+L  G+ + + V +  L+
Sbjct: 87  KVAPSSCTYTILIGCFCRMG-----------RLKHGFAAFGLILKTGWSLNNTVIFGQLL 135

Query: 295 DGCCKTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
            G C   R++ A + L   M + GC  N ++YN  ++        ++A+E+M  M +   
Sbjct: 136 KGLCDAKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGD 195

Query: 354 G--VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           G   P   +YT +I  LC+A  V  A+     ++D G  P  +TY
Sbjct: 196 GSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTY 240



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 26/204 (12%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A + F  M      P V  YN +++ L ++G F +A+ L   M     +C  D+YTY
Sbjct: 533 IDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKC--DIYTY 590

Query: 245 TILISSYCKYGM--------QTGCRKAIRRRIW----------------EANHLFRLMLF 280
           TI+++  C+           Q+ C K ++  I+                +A  LF  +  
Sbjct: 591 TIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISA 650

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G VPDV  Y  + +   K   +E   ELF  M + G  PN    N+ +R+     +I +
Sbjct: 651 YGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIGR 710

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPI 364
           A   + K+   N  +  S++   I
Sbjct: 711 AGVYLSKLDEKNFSLEASTTSMLI 734


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 133/303 (43%), Gaps = 82/303 (27%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           ++ T LI+ L  EG + EAL  F +M     +P+V  Y  +IN LC+VGN + A  LL  
Sbjct: 127 TTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 186

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG------- 282
           ME     C PDV  YT +I S CK            R++ EA +LF  M+ +G       
Sbjct: 187 MEQG--NCQPDVVIYTSIIDSLCK-----------DRQVTEAFNLFSQMVGQGISPDIFT 233

Query: 283 ----------------------------FVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                                        +PDVV ++ ++D  CK  ++  A E+ D M 
Sbjct: 234 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI 293

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIE----MMRK--------MQNLNHG-------- 354
           ++G  P+ VTY + +  + + +E+D+A++    M+RK           L +G        
Sbjct: 294 QRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKID 353

Query: 355 --------------VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
                         +P + +Y  ++H LC  GR+ +A     E+V  G +P   TY ++ 
Sbjct: 354 KAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILL 413

Query: 401 DAL 403
           D+L
Sbjct: 414 DSL 416



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 18/233 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + ++  L +EG V EA      M Q    PDV  Y  +++  C     ++A  + + M  
Sbjct: 270 STVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVR 329

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            GF   PDV +YT LI+ YCK             +I +A +LF  M  K ++PD   YN 
Sbjct: 330 KGF--APDVISYTTLINGYCKI-----------HKIDKAMYLFEEMCRKEWIPDTKTYNT 376

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ--N 350
           L+ G C   R++ A+ LF +M  +G +P+ VTY+  +        +++A+ +++ ++  N
Sbjct: 377 LMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASN 436

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           LN   P    Y  II  +C AG +  ARD  + L   G  P  +TY ++   L
Sbjct: 437 LN---PDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGL 486



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 29/244 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL++F R+      P +  +  ++ ++ ++ +++    L  QM+   F  PP+VYT 
Sbjct: 37  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMD--SFGVPPNVYTL 94

Query: 245 TILISSYC----------------KYGMQ---TGCRKAIRR-----RIWEANHLFRLMLF 280
            ILI+S+C                K G Q   T     IR      +I EA HLF  M+ 
Sbjct: 95  NILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID 154

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +GF P+VV Y  LI+G CK      A+ L   M +  C P+ V Y S I       ++ +
Sbjct: 155 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTE 214

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A  +  +M  +  G+ P   +YT ++HALC           L ++V+   +P    +  V
Sbjct: 215 AFNLFSQM--VGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTV 272

Query: 400 CDAL 403
            DAL
Sbjct: 273 VDAL 276



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 14/218 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V  A +   ++ +   +PD   +  +I  LC  G   +A  L ++M   GF+  P+V TY
Sbjct: 107 VGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQ--PNVVTY 164

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI+  CK G  +    AIR        L R M      PDVV Y  +ID  CK  ++ 
Sbjct: 165 GTLINGLCKVGNTSA---AIR--------LLRSMEQGNCQPDVVIYTSIIDSLCKDRQVT 213

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  LF  M  +G  P+  TY S +     + E      ++ +M N +  +P    ++ +
Sbjct: 214 EAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVN-SKILPDVVIFSTV 272

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + ALC+ G+V EA + +  ++  G  P   TY  + D 
Sbjct: 273 VDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDG 310



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 16/216 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA+  F  M +    PDV +Y  +IN  C++   +KA +L E+M    +   PD  TY
Sbjct: 317 MDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW--IPDTKTY 374

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L+   C  G           R+ +A  LF  M+ +G +PD+V Y+ L+D  CK   +E
Sbjct: 375 NTLMHGLCHVG-----------RLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLE 423

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A+ L   +      P+   YN  I       E++ A ++   +   + G+ P+  +Y  
Sbjct: 424 EAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLS--SKGLHPSVWTYNI 481

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           +IH LC+ G + EA     E+      P   TY  +
Sbjct: 482 MIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTI 517



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 22/234 (9%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A+  F  M +    PD   YN +++ LC VG    A  L  +M   G    PD+ TY
Sbjct: 352 IDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQM--PDLVTY 409

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           +IL+ S CK      C       + EA  L + +      PD+  YN +IDG C+   +E
Sbjct: 410 SILLDSLCK-----NC------HLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELE 458

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A +LF +++ KG  P+  TYN  I        +++A ++  +M   N   P   +Y  I
Sbjct: 459 AARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDG-NDCSPDGCTYNTI 517

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRK 418
                +    L A   L E++  G      T  L+ + L+        DDGL +
Sbjct: 518 ARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVEMLS--------DDGLDQ 563



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 15/197 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   L+  L   G + +A+A F+ M      PD+  Y++++++LC+  +  +A  LL+
Sbjct: 371 TKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLK 430

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            +E       PD+  Y I+I   C+ G            +  A  LF  +  KG  P V 
Sbjct: 431 AIEASNLN--PDIQVYNIIIDGMCRAG-----------ELEAARDLFSNLSSKGLHPSVW 477

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN +I G CK   +  A +LF +M+   C P+  TYN+  R +   NE  +AI+++ +M
Sbjct: 478 TYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEM 537

Query: 349 QNLNHGVPTSSSYTPII 365
             L  G     S T ++
Sbjct: 538 --LARGFSADVSTTTLL 552



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 15/164 (9%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
              +M  RG    + T S+  L+  L +   + EA+A    ++     PD+  YN++I+ 
Sbjct: 393 LFHEMVARGQMPDLVTYSI--LLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDG 450

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           +CR G    AR L   +   G    P V+TY I+I   CK G+             EAN 
Sbjct: 451 MCRAGELEAARDLFSNLSSKGLH--PSVWTYNIMIHGLCKRGLLN-----------EANK 497

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
           LF  M      PD   YN +  G  +     RA++L ++M  +G
Sbjct: 498 LFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARG 541


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 119/269 (44%), Gaps = 40/269 (14%)

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           +G + EA   +  M    C PD + Y+++I+ LC++G    A  LL +ME  GF   P +
Sbjct: 321 DGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGF--APSI 378

Query: 242 YTYTILISSYCKYGMQTGCRKAIR------------------------RRIWEANHLFRL 277
            TYTIL+ S+C+ GM    R  +                         RR+ +A    + 
Sbjct: 379 VTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQE 438

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M  +G+ PD+  YN +I   C   ++E A  LF+++  +G + N +TYN+ I        
Sbjct: 439 MKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGS 498

Query: 338 IDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
              AI +   M  + HG      SY  +I ALC  G V  +   L+E+ + G  P   +Y
Sbjct: 499 WQDAISLANDM--VLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSY 556

Query: 397 KLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
            L+   L              +R+RD +E
Sbjct: 557 NLLISELCKT-----------RRVRDALE 574



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 109/234 (46%), Gaps = 22/234 (9%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           TT + +   + L   G  +EAL     M +  C PD   Y  VI+ALC  G  N+A  LL
Sbjct: 171 TTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLL 230

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M L G  C  DV T+  ++   C  G           R+ EA  L   M+ +G VP+ 
Sbjct: 231 DEMFLMG--CSADVNTFNDIVHGLCTLG-----------RLREAARLVDRMMIRGCVPNA 277

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIP--NRVTYNSFIRYYSVVNEIDKAIEMM 345
           + Y  L+ G C   ++E A  +       G +P  N V +N+ I    +  ++ +A E+ 
Sbjct: 278 ITYGFLLKGLCLASQVEEARTML------GRVPELNVVLFNTVIGRCLLDGKLKEAAELY 331

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             M +     P + +Y+ +IH LC+ GR+  A   L E+ D G  P   TY ++
Sbjct: 332 ETMGS-KGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTIL 384



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 110/246 (44%), Gaps = 16/246 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           F+++M  +G    + T +   +I  L     + EA   F  +       +   YN +I+A
Sbjct: 435 FMQEMKSQGYKPDICTYNT--IIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHA 492

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           L R G++  A  L   M L G  C  D+ +Y  LI + C+ G        + R I     
Sbjct: 493 LLRNGSWQDAISLANDMVLHG--CSLDIVSYNGLIKALCRDG-------NVDRSIM---- 539

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L   M  KG  P+ V+YN LI   CKT R+  ALEL  +M  +   P+ VTYN+ I    
Sbjct: 540 LLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLC 599

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
            +  +  A+ ++ K+ N +       +Y  +I   C+A  + +A   L   V  G  P E
Sbjct: 600 KMGWMHAALNLLEKLHNEDVHADI-ITYNILISWHCKARLLHDASMLLNRAVTSGITPNE 658

Query: 394 YTYKLV 399
            T+ ++
Sbjct: 659 RTWGIM 664



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 80/205 (39%), Gaps = 50/205 (24%)

Query: 165 ELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           E V  +++T   LI  L   G   +A++    M    C  D+ +YN +I ALCR GN ++
Sbjct: 477 EGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDR 536

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           +  LL +M   G +  P+  +Y +LIS  CK            RR+ +A  L + ML + 
Sbjct: 537 SIMLLSEMAEKGIK--PNNVSYNLLISELCK-----------TRRVRDALELSKEMLNQE 583

Query: 283 FVPDVVAYN-----------------------------------CLIDGCCKTYRIERAL 307
             PD+V YN                                    LI   CK   +  A 
Sbjct: 584 LTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDAS 643

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYY 332
            L +     G  PN  T+   ++ +
Sbjct: 644 MLLNRAVTSGITPNERTWGIMVQNF 668



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 16/189 (8%)

Query: 222 KARFLLEQMELPG-FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           +A  LL+Q  LP  F   P   +Y  +++++ +    T           +   L+R M+ 
Sbjct: 118 RALHLLDQ--LPHRFAVSPSFRSYNTVLAAFARADCHT-----------DVLSLYRRMVH 164

Query: 281 KGFVPDVV-AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
           +  VP     ++      C+  R + AL +   M + GC+P+ V Y + I        ++
Sbjct: 165 RDRVPPTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVN 224

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           +A  ++ +M  +      ++ +  I+H LC  GR+ EA   +  ++  G VP   TY  +
Sbjct: 225 EAATLLDEMFLMGCSADVNT-FNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFL 283

Query: 400 CDALNAAEE 408
              L  A +
Sbjct: 284 LKGLCLASQ 292



 Score = 45.1 bits (105), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 5/115 (4%)

Query: 305 RALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           RAL L D +  +  + P+  +YN+ +  ++  +     + + R+M + +   PT+ +++ 
Sbjct: 118 RALHLLDQLPHRFAVSPSFRSYNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTTFTFSI 177

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA----EEPSLLDD 414
              ALC  GR  EA   L  +   G VP    Y+ V  AL A     E  +LLD+
Sbjct: 178 AARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDE 232


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 129/276 (46%), Gaps = 31/276 (11%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAY 207
           + LW FLKD   +G    +     + ++  L +EG ++EA      M  +  C PDV  Y
Sbjct: 404 EALW-FLKDAEEKGF--RIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTY 460

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK----- 262
             V+N  CR+G  +KA+ LL+ M   G++  P+  +YT L++  C+ G     R+     
Sbjct: 461 TAVVNGFCRLGEVDKAKKLLQIMHTHGYK--PNTVSYTALLNGLCRTGKSLEAREMMNMS 518

Query: 263 -----------------AIRR--RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
                             +R+  ++ EA  + R M+ KGF P  V  N L+   C+  R 
Sbjct: 519 EEQWWSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRT 578

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
             A +  ++   KGC  N V + + I  +   +E+D A+ ++  M  +N       +YT 
Sbjct: 579 HEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADV-FTYTT 637

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           ++ AL + GR+ EA + + +++  G  P   TY+ V
Sbjct: 638 LVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTV 673



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 133/290 (45%), Gaps = 18/290 (6%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F++W +R + + H+ M    M  V ++    +G    L  M RRG     T  +   
Sbjct: 193 ALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKMCQGARRVLVLMKRRGIYR--TPEAFLR 250

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++      G + +AL     M++    P++   N  I+   R     KA   LE+M++ G
Sbjct: 251 VMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVG 310

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V TY  +I  YC              R+ EA  L   M  KG +PD V+Y  ++
Sbjct: 311 I--VPNVVTYNCMIRGYCDL-----------HRVEEAIELLDDMPSKGCLPDKVSYYTIM 357

Query: 295 DGCCKTYRIERALELFDDMNKK-GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
              CK  RI    +L   M K+ G + ++VTYN+ I   +  +  D+A+  ++  +    
Sbjct: 358 GYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGF 417

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE-YTYKLVCDA 402
            +     Y+ I+HALC+ GR+ EA+D + E++  G  P +  TY  V + 
Sbjct: 418 RI-DKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNG 466



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 15/202 (7%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D   YN +I+ L +  + ++A + L+  E  GFR   D   Y+ ++ + CK G       
Sbjct: 385 DQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRI--DKVGYSAIVHALCKEG------- 435

Query: 263 AIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               R+ EA  L   ML KG  P DVV Y  +++G C+   +++A +L   M+  G  PN
Sbjct: 436 ----RMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPN 491

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            V+Y + +       +  +A EMM  M       P S +Y+ ++H L + G++ EA D +
Sbjct: 492 TVSYTALLNGLCRTGKSLEAREMM-NMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVV 550

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+V  G  P      L+  +L
Sbjct: 551 REMVLKGFFPGPVEINLLLQSL 572



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 92/217 (42%), Gaps = 16/217 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + L+  L +EG ++EA      M      P     N+++ +LCR G  ++AR  +E+   
Sbjct: 531 SVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLN 590

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C  +V  +T +I  +C+              +  A  +   M       DV  Y  
Sbjct: 591 KG--CAINVVNFTTVIHGFCQ-----------NDELDAALSVLDDMYLINKHADVFTYTT 637

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+D   K  RI  A EL   M  KG  P  VTY + I  Y  + ++D  + ++ KM  L 
Sbjct: 638 LVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDLVAILEKMI-LR 696

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
               T   Y  +I  LC  G++ EA   L +++   S
Sbjct: 697 QKCKT--IYNQVIEKLCGLGKLEEADKLLGKVLRTAS 731


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 121/254 (47%), Gaps = 20/254 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + LK+M  RG    +TT ++  L+K     G + EA   F +MK+     DV  Y  +++
Sbjct: 238 EVLKEMVERGLTPTITTYNI--LLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVH 295

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
               VG   +AR +  +M   G    P   TY  +I   CK           +  +  A 
Sbjct: 296 GFGVVGEIKRARKVFNEMVGEGIL--PSTATYNAMIQVLCK-----------KDSVENAV 342

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F  M+ KG+VP++  YN +I G      +++A+E  + M   GC PN  TYN  IRY+
Sbjct: 343 LMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYF 402

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC---EAGRVLEARDFLAELVDGGS 389
               +++K + M  KM      +P   +Y  +I A+    ++  ++ A   L E+VD G 
Sbjct: 403 CDAGDVEKGLSMFEKMGQ--GSLPNLDTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGF 460

Query: 390 VPREYTYKLVCDAL 403
           +PR++T+  V + L
Sbjct: 461 IPRKFTFNRVLNGL 474



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 28/270 (10%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           +S R +G      S   ++ +L +   V  A    +++ + + + DV +YN++ N  C +
Sbjct: 171 LSMREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLI 230

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG---------MQTGCRK------ 262
               KA  +L++M   G    P + TY IL+  Y + G         +Q   R+      
Sbjct: 231 KRTPKALEVLKEMVERGL--TPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVV 288

Query: 263 ---------AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                     +   I  A  +F  M+ +G +P    YN +I   CK   +E A+ +F++M
Sbjct: 289 TYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEM 348

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            KKG +PN  TYN  IR       +DKA+E + +M+  +   P   +Y   I   C+AG 
Sbjct: 349 VKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKT-DGCEPNVQTYNVAIRYFCDAGD 407

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           V +      E +  GS+P   TY ++  A+
Sbjct: 408 VEKGLSMF-EKMGQGSLPNLDTYNVLISAM 436



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 134/291 (46%), Gaps = 18/291 (6%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           KA +F+  +E    + H+  +      +  R  + K +W  +  M  R  G   ++ +  
Sbjct: 94  KALQFFKHLEYHPSYAHSASSFDHAIDIAGRMRDYKTVWALVARMRARRIGP--SSKTFA 151

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            + +     G  + A+  F  M++  C  D++++N +++ LC+      A   L ++   
Sbjct: 152 IIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRG 211

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
            F+   DV +Y I+ + +C           + +R  +A  + + M+ +G  P +  YN L
Sbjct: 212 KFKA--DVVSYNIIANGWC-----------LIKRTPKALEVLKEMVERGLTPTITTYNIL 258

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           + G  +  +++ A E F  M ++    + VTY + +  + VV EI +A ++  +M  +  
Sbjct: 259 LKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEM--VGE 316

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           G+ P++++Y  +I  LC+   V  A     E+V  G VP   TY +V   L
Sbjct: 317 GILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGL 367



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 17/188 (9%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G L +T++   +I+VL ++  V  A+  F  M +    P++  YNVVI  L   GN +
Sbjct: 315 GEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMD 374

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           KA   +E+M+  G  C P+V TY + I  +C  G            + +   +F  M  +
Sbjct: 375 KAMEFIERMKTDG--CEPNVQTYNVAIRYFCDAG-----------DVEKGLSMFEKM-GQ 420

Query: 282 GFVPDVVAYNCLIDGCC---KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           G +P++  YN LI       K+  +  A +L  +M  +G IP + T+N  +    +    
Sbjct: 421 GSLPNLDTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGLLLTGNQ 480

Query: 339 DKAIEMMR 346
             A E++R
Sbjct: 481 AFAKEILR 488


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 130/283 (45%), Gaps = 25/283 (8%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           RG++    +D +K     G G +    +   ++ +  +     +A   +  M + R +  
Sbjct: 136 RGDDAFECFDMMK-----GKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSS 190

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V  +N++IN LC+ G   KA+  +  ME  G +  P+V TY  +I  YC  G        
Sbjct: 191 VVTFNIMINVLCKEGKLKKAKEFIGLMEALGIK--PNVVTYNTIIHGYCSRG-------- 240

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              R+  A  +F LM  +G  PD   Y   I G CK  ++E A  + + M + G  P  V
Sbjct: 241 ---RVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAV 297

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           TYN+ I  Y     ++ A +   KM  +  G+ PT S+Y  +IHAL    ++ EA   + 
Sbjct: 298 TYNTLIDGYCNKGNLEMAFDYRDKM--VREGLMPTVSTYNMLIHALFLDCKMDEADGIIK 355

Query: 383 ELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIR 421
           E+ + G VP   TY ++    C   N  +  +L D+ + K I+
Sbjct: 356 EMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQ 398



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 134/284 (47%), Gaps = 18/284 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           +    N++  +D+   M R G   + T S+   LI  L  +  ++EA      M +    
Sbjct: 306 YCNKGNLEMAFDYRDKMVREG--LMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLV 363

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN++IN  CR GN  KA  L ++M   G +  P   TYT LI    K G      
Sbjct: 364 PDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQ--PTRVTYTSLIYVLSKRG------ 415

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +A+ LF  ++ KG  PD++ +N LIDG C    ++RA  +  +M++   +P+
Sbjct: 416 -----RMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPD 470

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            VT+N+ ++      +++ A E++ +M+  + G+ P   SY  +I    + G + +A   
Sbjct: 471 EVTFNTLMQGRCREGKVEAARELIEEMK--SRGIKPDHISYNTLISGYSKRGDMKDAFRV 528

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
             E++  G  P   TY  +   L   EE    +  L++ I  GI
Sbjct: 529 RDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGI 572



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 105/239 (43%), Gaps = 29/239 (12%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G V  A   F  MK    +PD Y Y   I+ +C+ G   +A  +LE+M+  G R  P   
Sbjct: 240 GRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLR--PTAV 297

Query: 243 TYTILISSYCKYG---MQTGCRKAIRR---------------------RIWEANHLFRLM 278
           TY  LI  YC  G   M    R  + R                     ++ EA+ + + M
Sbjct: 298 TYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEM 357

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
             KG VPD V YN LI+G C+   +++A  L D+M  KG  P RVTY S I   S    +
Sbjct: 358 SEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRM 417

Query: 339 DKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +A ++  K+  +  G+ P    +  +I   C  G +  A   L E+     VP E T+
Sbjct: 418 KQADDLFEKI--VRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTF 474



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 69/148 (46%), Gaps = 13/148 (8%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++ A A    M Q +  PD   +N ++   CR G    AR L+E+M+  G +  PD  
Sbjct: 450 GNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIK--PDHI 507

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           +Y  LIS Y K G     + A R R          ML  GF P ++ YN LI G CK   
Sbjct: 508 SYNTLISGYSKRG---DMKDAFRVR--------DEMLSIGFNPTLLTYNALIQGLCKNEE 556

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIR 330
            + A +L  +M  KG  PN  TY S I 
Sbjct: 557 GDHAEQLLKEMISKGITPNDNTYLSLIE 584



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V Y+ LI  CC+  R + A E FD M  KG IP+    N  +  +   N  +KA  +  +
Sbjct: 122 VLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAE 181

Query: 348 MQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           M  +   + +S  ++  +I+ LC+ G++ +A++F+  +   G  P   TY  +
Sbjct: 182 MFRMR--IKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTI 232


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 101/210 (48%), Gaps = 16/210 (7%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           MK+    PD+ +YN +IN LC+     KA  LL +ME  G  C P+ +TY IL+   CK 
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEME--GSSCEPNSFTYCILMDGLCKE 58

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G           R+ EA  L   M  KG   DVV Y+ LI G C    ++R   LFD+M 
Sbjct: 59  G-----------RVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEML 107

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGR 373
           +KG  PN V Y+  I  +       +A  ++  M     G+ P   +YT +I  LC+ GR
Sbjct: 108 EKGISPNVVVYSCLINGFCKKGLWREATAVLHTMT--ERGIQPDVYTYTCMIGGLCKDGR 165

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +A D    + + G  P   TY ++ + L
Sbjct: 166 ARKALDLFDLMTEKGEEPSTVTYNVLINGL 195



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 31/265 (11%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           +CLI    ++GL  EA A  + M +   +PDVY Y  +I  LC+ G   KA  L + M  
Sbjct: 119 SCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTE 178

Query: 233 PGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAI------------RRRI 268
            G    P   TY +LI+  CK G            ++ G R  +              ++
Sbjct: 179 KGEE--PSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKL 236

Query: 269 WEANHLFRLMLFKG--FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            EA  LF  +L  G    PDV+ +N +I G CK  R+++A+E++D M ++G   N  T +
Sbjct: 237 DEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCH 296

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             I  Y     IDKA+E+ +++  L   VP+S++Y+ +I   C+   +  A+   + +  
Sbjct: 297 ILIGEYIKSGIIDKAMELWKRVHKLGL-VPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKI 355

Query: 387 GGSVPREYTYKLVCDALNAAEEPSL 411
            G  P  + Y  +  +L   +E SL
Sbjct: 356 SGLSPTLFDYNTLMASL--CKESSL 378



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 107/232 (46%), Gaps = 18/232 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L +EG V EA+     MK+     DV  Y+ +I+  C  G  ++ + L ++M   G
Sbjct: 51  LMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKG 110

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EANHLFRLMLFKGFVPDVVAYNCL 293
               P+V  Y+ LI+ +CK G+            W EA  +   M  +G  PDV  Y C+
Sbjct: 111 I--SPNVVVYSCLINGFCKKGL------------WREATAVLHTMTERGIQPDVYTYTCM 156

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I G CK  R  +AL+LFD M +KG  P+ VTYN  I        I  A ++   M     
Sbjct: 157 IGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGK 216

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV--PREYTYKLVCDAL 403
            +    SY  +I  LC  G++ EA    + L++ G+   P   T+  V   L
Sbjct: 217 RLEV-VSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGL 267



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 118/246 (47%), Gaps = 21/246 (8%)

Query: 173 TCLIKVLGE---EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           TC I ++GE    G++++A+  + R+ +    P    Y+V+I+  C++   N A+ L  +
Sbjct: 294 TCHI-LIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSR 352

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M++ G    P ++ Y  L++S CK              + +A  LF+ M      PD ++
Sbjct: 353 MKISGL--SPTLFDYNTLMASLCK-----------ESSLEQARRLFQEMKESNCEPDTIS 399

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           +N +IDG  K   I  A EL +DM + G  P+  TY+SFI   S + ++++A      M 
Sbjct: 400 FNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSM- 458

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV-PREYTYKLVCDALNAAE 407
            +  G+ P +  Y  +I        + E  + L ++ D G +   E T  ++    N+AE
Sbjct: 459 -IASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSILTFLCNSAE 517

Query: 408 EPSLLD 413
              +++
Sbjct: 518 HLHVME 523



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 25/257 (9%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           GE  +T +   LI  L +EG + +A   F  M +   R +V +YN +I  LC  G  ++A
Sbjct: 180 GEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEA 239

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYG------------MQTG-------CRKAI 264
             L   +   G    PDV T+  +I   CK G            ++ G       C   I
Sbjct: 240 MKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILI 299

Query: 265 RRRIW-----EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
              I      +A  L++ +   G VP    Y+ +IDG CK + +  A  LF  M   G  
Sbjct: 300 GEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLS 359

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P    YN+ +      + +++A  + ++M+  N   P + S+  +I    +AG +  A++
Sbjct: 360 PTLFDYNTLMASLCKESSLEQARRLFQEMKESNC-EPDTISFNIMIDGTLKAGDIHSAKE 418

Query: 380 FLAELVDGGSVPREYTY 396
            L ++   G  P  YTY
Sbjct: 419 LLNDMQQMGLTPDAYTY 435



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 13/142 (9%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T S   +I    + G ++ A      M+Q    PD Y Y+  IN L ++G   +A+   +
Sbjct: 397 TISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFD 456

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            M   G    PD + Y  LI  +            +   I E  +L R M   G + D+ 
Sbjct: 457 SMIASGI--TPDNHVYDSLIKGF-----------GLNDEIEEVINLLRQMADMGVILDLE 503

Query: 289 AYNCLIDGCCKTYRIERALELF 310
             N ++   C +      +EL 
Sbjct: 504 ITNSILTFLCNSAEHLHVMELL 525


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 16/233 (6%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           V   + T L+K L  +   ++A+     RM +  C P+V++YN+++  LC      +A  
Sbjct: 120 VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALE 179

Query: 226 LLEQM-ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
           LL  M +  G   PPDV +YT +I+ + K G              +A   +  ML +G +
Sbjct: 180 LLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSD-----------KAYSTYHEMLDRGIL 228

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           PDVV YN +I   CK   +++A+E+ + M K G +P+ +TYNS +  Y    +  +AI  
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288

Query: 345 MRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           ++KM+  + GV P   +Y+ ++  LC+ GR +EAR     +   G  P   TY
Sbjct: 289 LKKMR--SDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 125/301 (41%), Gaps = 61/301 (20%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           RG G      S T +I    +EG  ++A +T++ M      PDV  YN +I ALC+    
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           +KA  +L  M   G    PD  TY  ++  YC  G              EA    + M  
Sbjct: 248 DKAMEVLNTMVKNGVM--PDCMTYNSILHGYCSSGQPK-----------EAIGFLKKMRS 294

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV------ 334
            G  PDVV Y+ L+D  CK  R   A ++FD M K+G  P   TY + ++ Y+       
Sbjct: 295 DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVE 354

Query: 335 -----------------------------VNEIDKAIEMMRKM--QNLNHGVPTSSSYTP 363
                                          ++D+A+ +  KM  Q LN   P + +Y  
Sbjct: 355 MHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLN---PNAVTYGA 411

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV------CDALNAAEE--PSLLDDG 415
           +I  LC++GRV +A  +  +++D G  P    Y  +      C+    AEE    +LD G
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471

Query: 416 L 416
           +
Sbjct: 472 I 472



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 119/273 (43%), Gaps = 38/273 (13%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI     +G V++A+  F +M+Q    P+   Y  VI  LC+ G    A    EQM  
Sbjct: 375 SILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434

Query: 233 PGFRCPPDVYTYTILISSYCKYG---------------------------MQTGCRKAIR 265
            G    P    Y  LI   C                              + + C++   
Sbjct: 435 EGL--SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEG-- 490

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            R+ E+  LF LM+  G  P+V+ YN LI+G C   +++ A++L   M   G  PN VTY
Sbjct: 491 -RVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           ++ I  Y  ++ ++ A+ + ++M+  + GV P   +Y  I+  L +  R   A++    +
Sbjct: 550 STLINGYCKISRMEDALVLFKEME--SSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 607

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
            + G+     TY ++   L+   +  L DD L+
Sbjct: 608 TESGTQIELSTYNII---LHGLCKNKLTDDALQ 637



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 14/221 (6%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG V E+   F  M +   +P+V  YN +IN  C  G  ++A  LL  M   G +  P+
Sbjct: 488 KEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLK--PN 545

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
             TY+ LI+ YCK             R+ +A  LF+ M   G  PD++ YN ++ G  +T
Sbjct: 546 TVTYSTLINGYCKI-----------SRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT 594

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R   A EL+  + + G      TYN  +         D A++M + +  ++  +  + +
Sbjct: 595 RRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLE-ART 653

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           +  +I AL + GR  EA+D        G VP  +TY+L+ +
Sbjct: 654 FNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAE 694



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 18/244 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FLK M   G    V T S+  L+  L + G   EA   F  M +   +P++  Y  ++  
Sbjct: 288 FLKKMRSDGVEPDVVTYSL--LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQG 345

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
               G   +   LL+ M   G    PD Y ++ILI +Y   G           ++ +A  
Sbjct: 346 YATKGALVEMHGLLDLMVRNGIH--PDHYVFSILICAYANQG-----------KVDQAML 392

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +F  M  +G  P+ V Y  +I   CK+ R+E A+  F+ M  +G  P  + YNS I    
Sbjct: 393 VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC 452

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             N+ ++A E++ +M  L+ G+  ++  +  II + C+ GRV+E+      +V  G  P 
Sbjct: 453 TCNKWERAEELILEM--LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPN 510

Query: 393 EYTY 396
             TY
Sbjct: 511 VITY 514



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 18/228 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  Y ++I   CR G  +     L  +   GFR   D   +T L+   C     +   
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRV--DAIAFTPLLKGLCADKRTSDAM 142

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD---DMNKKGC 318
             + RR+ E           G +P+V +YN L+ G C   R + ALEL     D    G 
Sbjct: 143 DIVLRRMTEL----------GCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGS 192

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
            P+ V+Y + I  +    + DKA     +M  L+ G+ P   +Y  II ALC+A  + +A
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEM--LDRGILPDVVTYNSIIAALCKAQAMDKA 250

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
            + L  +V  G +P   TY  +     ++ +P      L+K   DG+E
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVE 298



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 81/223 (36%), Gaps = 28/223 (12%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + +AL  F  M+     PD+  YN+++  L +      A+ L  ++   G +   ++ TY
Sbjct: 562 MEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQI--ELSTY 619

Query: 245 TILISSYCKYGM--------QTGCRKAIR----------------RRIWEANHLFRLMLF 280
            I++   CK  +        Q  C   ++                 R  EA  LF     
Sbjct: 620 NIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSS 679

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G VP+   Y  + +       +E   +LF  M   GC  +    N  +R      EI +
Sbjct: 680 NGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITR 739

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           A   +  +   +  +  S++   +   L   G+  E   FL E
Sbjct: 740 AGTYLSMIDEKHFSLEASTA--SLFIDLLSGGKYQEYYRFLPE 780


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 14/217 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G+++E       M     +PDVY Y+V+IN LC+    + A  L ++M + G    P+  
Sbjct: 166 GVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGL--VPNGV 223

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +  +PD++ YN LI G CK   
Sbjct: 224 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGD 272

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L DDM++KG  P+++TY + I        +  A E  +++   N  +     YT
Sbjct: 273 LKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLD-DVVYT 331

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +I  LC+ GR ++A   L E++  G  P   TY ++
Sbjct: 332 ALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMI 368



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 104/201 (51%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P   +Y  L++ Y + G+       
Sbjct: 117 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSAVSYNTLMNGYIRLGV------- 167

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +PN V
Sbjct: 168 ----LDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGV 223

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A D +
Sbjct: 224 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSL---LPDLITYNTLIYGLCKKGDLKQAHDLI 280

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            ++   G  P + TY  + D 
Sbjct: 281 DDMSRKGLKPDKITYTTLIDG 301



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 14/197 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A  L++ M
Sbjct: 224 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDM 283

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +  PD  TYT LI   CK G+     +  +R I E   L           D V Y
Sbjct: 284 SRKGLK--PDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRL-----------DDVVY 330

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ 
Sbjct: 331 TALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 390

Query: 351 LNHGVPTSSSYTPIIHA 367
             H VP+  +Y  +++ 
Sbjct: 391 DGH-VPSVVTYNVLMNG 406



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 15/155 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +  ++K   D + DMSR+G      T   T LI    +EG++  A     R+ Q   R
Sbjct: 267 LCKKGDLKQAHDLIDDMSRKGLKPDKIT--YTTLIDGCCKEGVLVSAFEHRKRLIQENIR 324

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            D   Y  +I+ LC+ G    A  +L +M   G    PD  TYT++I+ +CK G      
Sbjct: 325 LDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLN--PDTGTYTMIINEFCKKG------ 376

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                 +W+ + L + M   G VP VV YN L++G
Sbjct: 377 -----DVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 406



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 33/192 (17%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAI-------RRRIWEA--------NHLFRLMLFK-- 281
            D+Y ++ LI++Y + G     R AI       + ++W           +L +L  FK  
Sbjct: 45  SDIYVFSGLITAYLESGF---LRDAIECYXLTRKHKLWVPFDTCRKVLEYLMKLKYFKLV 101

Query: 282 -GFVPDVVA---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
            GF  +++          +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  
Sbjct: 102 WGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNG 161

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
           Y  +  +D+   +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G V
Sbjct: 162 YIRLGVLDEGFRLKSAM--LASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLV 219

Query: 391 PREYTYKLVCDA 402
           P   T+  + D 
Sbjct: 220 PNGVTFTTLIDG 231


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 14/204 (6%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           RM +  C+PD+++Y +++  LC      +A  LL  M     RCP DV  YT +I+   +
Sbjct: 161 RMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLR 220

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           ++ +A  LF  ML +G  PDVV Y+ +I    KT  +++A ++F  M
Sbjct: 221 EG-----------QLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRM 269

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
            K G +P+ + Y S +  Y    +  +AI + +KM    HGV P   +YT ++  LC+ G
Sbjct: 270 VKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKM--CRHGVEPDVVTYTALMDYLCKNG 327

Query: 373 RVLEARDFLAELVDGGSVPREYTY 396
           +  EAR     LV  G  P   TY
Sbjct: 328 KSTEARKIFDSLVKRGHKPDSTTY 351



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 37/230 (16%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+EAL  F  M+Q    PD+  Y  V++ LC  G  + A      ++  G    P++  +
Sbjct: 399 VDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGL--APNIVVF 456

Query: 245 TILISSYCKYG---------------------------MQTGCRKAIRRRIWEANHLFRL 277
           T LI   C                              M   C+K    R+ EA +LF L
Sbjct: 457 TTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKG---RVIEAKNLFDL 513

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+  G  P+   YN LIDG C   +++ A++L   M   G  P+ VTYN+ I  YS    
Sbjct: 514 MVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGR 573

Query: 338 IDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           I+  + ++R+M  + +N G+ T   Y  ++  L +AGR + A++    ++
Sbjct: 574 IEDGLTLLREMDGKGVNPGIVT---YEMLLQGLFQAGRTVAAKELYLRMI 620



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 115/265 (43%), Gaps = 29/265 (10%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG +      T L+      G   EA+  F +M +    PDV  Y  +++ LC+ G   +
Sbjct: 272 NGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTE 331

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYC----------------KYGMQTGCR----- 261
           AR + + +   G +  PD  TY  L+  Y                 K GMQ G       
Sbjct: 332 ARKIFDSLVKRGHK--PDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMI 389

Query: 262 ---KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
               A   ++ EA  +F  M  +G  PD+V Y  ++D  C   R++ AL  F+ +  +G 
Sbjct: 390 MGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGL 449

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY-TPIIHALCEAGRVLEA 377
            PN V + + I      ++ DK  E+  +M  ++ G+   + +   I+  LC+ GRV+EA
Sbjct: 450 APNIVVFTTLIHGLCTCDKWDKVEELAFEM--IDRGICLDTIFFNAIMGNLCKKGRVIEA 507

Query: 378 RDFLAELVDGGSVPREYTYKLVCDA 402
           ++    +V  G  P   TY  + D 
Sbjct: 508 KNLFDLMVRIGIEPNTNTYNTLIDG 532



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 109/250 (43%), Gaps = 25/250 (10%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I  L  EG +++A + F  M      PDV  Y+ +I+AL +    +KA  +  +M  
Sbjct: 212 TTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVK 271

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PD   YT L+  YC  G           +  EA  +F+ M   G  PDVV Y  
Sbjct: 272 NGVM--PDCIMYTSLVHGYCSSG-----------KPKEAIGIFKKMCRHGVEPDVVTYTA 318

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY----SVVNEIDKAIEMMRKM 348
           L+D  CK  +   A ++FD + K+G  P+  TY + +  Y    ++V   D    MM+K 
Sbjct: 319 LMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKG 378

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
             L H +     +  I+ A  +  +V EA    + +   G  P    Y  V D L  A  
Sbjct: 379 MQLGHHI-----FNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGR 433

Query: 409 PSLLDDGLRK 418
              +DD L +
Sbjct: 434 ---VDDALSQ 440



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 108/275 (39%), Gaps = 55/275 (20%)

Query: 188 ALATFYRMKQF---RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           A++ F RM +       P++  Y +VI    R+G  + A   + ++   G R  P+    
Sbjct: 80  AISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRHEPNP--- 136

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC------ 298
              + S  +  + T   +A+R  I     + R M   G  PD+ +Y  L+ G C      
Sbjct: 137 ---LQSSSQGPLCTAGGRAMRMDI-----VLRRMPELGCKPDLFSYTILLKGLCDDKTSQ 188

Query: 299 -------------------------------KTYRIERALELFDDMNKKGCIPNRVTYNS 327
                                          +  ++++A  LFD M  +G  P+ VTY+S
Sbjct: 189 QALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSS 248

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I   S    +DKA ++  +M   N  +P    YT ++H  C +G+  EA     ++   
Sbjct: 249 IISALSKTQAMDKATQVFTRMVK-NGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRH 307

Query: 388 GSVPREYTYKLVCDAL---NAAEEPSLLDDGLRKR 419
           G  P   TY  + D L     + E   + D L KR
Sbjct: 308 GVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKR 342


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 121/262 (46%), Gaps = 31/262 (11%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G  +   +   ++  + + G    AL    +M++   +PDV  Y+ +I+ LC+ G+ +
Sbjct: 249 GKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHS 308

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------------- 266
            A++L  +M   G    P+V+TY  +I  +C +G  +  ++ +R                
Sbjct: 309 DAQYLFSEMLEKGI--APNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNA 366

Query: 267 ---------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    +++EA  L   ML +   PD V YN +I G CK  R + A  +FD M    
Sbjct: 367 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-- 424

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P+ VT+N+ I  Y     +D+ ++++R++      V  +++Y  +IH  CE   +  A
Sbjct: 425 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL-VANTTTYNTLIHGFCEVDNLNAA 481

Query: 378 RDFLAELVDGGSVPREYTYKLV 399
           +D   E++  G  P   T  ++
Sbjct: 482 QDLFQEMISHGVCPDTITCNIL 503



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 112/275 (40%), Gaps = 59/275 (21%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  EG V EA A   +M       DV  Y  ++N +C++G+   A  LL +ME   
Sbjct: 227 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 286

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PDV  Y+ +I   CK G  +           +A +LF  ML KG  P+V  YNC+I
Sbjct: 287 IK--PDVVIYSAIIDRLCKDGHHS-----------DAQYLFSEMLEKGIAPNVFTYNCMI 333

Query: 295 DGCCKTYR-----------IER------------------------ALELFDDMNKKGCI 319
           DG C   R           IER                        A +L D+M  +   
Sbjct: 334 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 393

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ VTYNS I  +   N  D A  M   M +     P   ++  II   C A RV E   
Sbjct: 394 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-----PDVVTFNTIIDVYCRAKRVDEGMQ 448

Query: 380 FLAELVDGGSVPREYTYKLV------CDALNAAEE 408
            L E+   G V    TY  +       D LNAA++
Sbjct: 449 LLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 483



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 114/230 (49%), Gaps = 33/230 (14%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +I  L ++G  ++A   F  M +    P+V+ YN +I+  C  G ++ A+ LL  M  
Sbjct: 295 SAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM-- 352

Query: 233 PGFRCPPDVYTYTILISSYCKYG----MQTGCRKAIRRRIW------------------- 269
                 PDV T+  LIS+  K G     +  C + + R I+                   
Sbjct: 353 IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRF 412

Query: 270 -EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +A H+F LM      PDVV +N +ID  C+  R++  ++L  +++++G + N  TYN+ 
Sbjct: 413 DDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 468

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
           I  +  V+ ++ A ++ ++M  ++HGV P + +   +++  CE  ++ EA
Sbjct: 469 IHGFCEVDNLNAAQDLFQEM--ISHGVCPDTITCNILLYGFCENEKLEEA 516



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 14/219 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+E +     + +     +   YN +I+  C V N N A+ L ++M   G    PD  T 
Sbjct: 443 VDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV--CPDTITC 500

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            IL+  +C+             ++ EA  LF ++       D VAYN +I G CK  +++
Sbjct: 501 NILLYGFCE-----------NEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVD 549

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A +LF  +   G  P+  TYN  I  +   + I  A  +  KM++  H  P +S+Y  +
Sbjct: 550 EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHE-PDNSTYNTL 608

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           I    +AG + ++ + ++E+   G     +T K+V D +
Sbjct: 609 IRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLI 647



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 8/237 (3%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A++ + +M+  R   ++Y++N++I   C     + +     ++   GF+  PDV T+  L
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQ--PDVVTFNTL 182

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           +   C    +     A+   + E   LF  M+  G  P V+ +N LI+G C   R+  A 
Sbjct: 183 LHGLCLED-RISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAA 241

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
            L + M  KG   + VTY + +     + +   A+ ++ KM+   H  P    Y+ II  
Sbjct: 242 ALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEE-THIKPDVVIYSAIIDR 300

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA----AEEPSLLDDGLRKRI 420
           LC+ G   +A+   +E+++ G  P  +TY  + D   +    ++   LL D + + I
Sbjct: 301 LCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREI 357



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 99/234 (42%), Gaps = 17/234 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V+ R   V      L+++SRRG   +  T++   LI    E   +N A   F  M     
Sbjct: 436 VYCRAKRVDEGMQLLREISRRG--LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 493

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD    N+++   C      +A  L E +++   +   D   Y I+I   CK       
Sbjct: 494 CPDTITCNILLYGFCENEKLEEALELFEVIQMS--KIDLDTVAYNIIIHGMCK------- 544

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA  LF  +   G  PDV  YN +I G C    I  A  LF  M   G  P
Sbjct: 545 ----GSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEP 600

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           +  TYN+ IR      EIDK+IE++ +M+  ++G    +    ++  L   GR+
Sbjct: 601 DNSTYNTLIRGCLKAGEIDKSIELISEMR--SNGFSGDAFTIKMVADLITDGRL 652


>gi|255660950|gb|ACU25644.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
          Length = 481

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 134/281 (47%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F H+  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFQHDRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDLWV 84

Query: 175 L-IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L I   G++G+V E++  F +M++      + +Y+ +   + R G F  A+    +M   
Sbjct: 85  LMIDSYGKKGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRFMMAKRYFNKMLNE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDV+ YN L
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANXFFEDMKSRDITPDVITYNTL 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A   F +M  +   P  +TY + I+ Y  V+ +D A+ +M +M+    
Sbjct: 192 INGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIKGYVSVDRVDDALSLMEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EA+  L E+VD    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEAQSILKEMVDKYIAPTD 290



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 88/214 (41%), Gaps = 25/214 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA   F  MK     P V  Y  +I     V   + A  L+E+M+  GF   P+  TY
Sbjct: 201 MEEAERYFVEMKGRNIEPTVITYTTLIKGYVSVDRVDDALSLMEEMK--GFGIKPNAITY 258

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRI 303
           + L+   C              ++ EA  + + M+ K   P D   +  LI G CK   +
Sbjct: 259 STLLPGLCN-----------AEKMSEAQSILKEMVDKYIAPTDNSIFLKLISGQCKAGNL 307

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM---------QNLNHG 354
           + A ++   M +         Y   I  Y    + DKA+ ++ K+         Q+  H 
Sbjct: 308 DAAADVLKAMIRLSVPTEAGHYGVLIENYCKAEKYDKAVNLLDKLIEKDIILRPQSTLHM 367

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            P  S+Y P+I  LC+ G+  +A   + +L+  G
Sbjct: 368 EP--SAYNPMIEYLCDNGQTAKAETLVRQLMKLG 399



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 111/277 (40%), Gaps = 25/277 (9%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL+    MK F  +P+   Y+ ++  LC     ++A+ +L
Sbjct: 219 TVITYTTLIKGYVSVDRVDDALSLMEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAQSIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LIS  CK G            +  A  + + M+      + 
Sbjct: 279 KEM-VDKYIAPTDNSIFLKLISGQCKAG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCI--PNRV------TYNSFIRYYSVVNEID 339
             Y  LI+  CK  + ++A+ L D + +K  I  P          YN  I Y     +  
Sbjct: 327 GHYGVLIENYCKAEKYDKAVNLLDKLIEKDIILRPQSTLHMEPSAYNPMIEYLCDNGQTA 386

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           KA  ++R++  L  GV   ++   +I    + G    A + L  ++       +  Y  +
Sbjct: 387 KAETLVRQLMKL--GVQEPTALNTLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYDSL 444

Query: 400 CDALNAAEEPSLLDDGLRKRIRDG---IEYRFRQVMK 433
             +     EP+     L   I +G       FR VM+
Sbjct: 445 VQSYLKKNEPADAKAALDSMIENGHLPDSSLFRSVME 481


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 16/233 (6%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
           V   + T L+K L  +   ++A+     RM +  C P+V++YN+++  LC      +A  
Sbjct: 120 VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALE 179

Query: 226 LLEQM-ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
           LL  M +  G   PPDV +YT +I+ + K G              +A   +  ML +G +
Sbjct: 180 LLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSD-----------KAYSTYHEMLDRGIL 228

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           PDVV YN +I   CK   +++A+E+ + M K G +P+ +TYNS +  Y    +  +AI  
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288

Query: 345 MRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           ++KM+  + GV P   +Y+ ++  LC+ GR +EAR     +   G  P   TY
Sbjct: 289 LKKMR--SDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 125/301 (41%), Gaps = 61/301 (20%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           RG G      S T +I    +EG  ++A +T++ M      PDV  YN +I ALC+    
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           +KA  +L  M   G    PD  TY  ++  YC  G              EA    + M  
Sbjct: 248 DKAMEVLNTMVKNGVM--PDCMTYNSILHGYCSSGQPK-----------EAIGFLKKMRS 294

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV------ 334
            G  PDVV Y+ L+D  CK  R   A ++FD M K+G  P   TY + ++ Y+       
Sbjct: 295 DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVE 354

Query: 335 -----------------------------VNEIDKAIEMMRKM--QNLNHGVPTSSSYTP 363
                                          ++D+A+ +  KM  Q LN   P + +Y  
Sbjct: 355 MHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN---PNAVTYGA 411

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV------CDALNAAEE--PSLLDDG 415
           +I  LC++GRV +A  +  +++D G  P    Y  +      C+    AEE    +LD G
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471

Query: 416 L 416
           +
Sbjct: 472 I 472



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 120/273 (43%), Gaps = 38/273 (13%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI    ++G V++A+  F +M+Q    P+   Y  VI  LC+ G    A    EQM  
Sbjct: 375 SILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434

Query: 233 PGFRCPPDVYTYTILISSYCKYG---------------------------MQTGCRKAIR 265
            G    P    Y  LI   C                              + + C++   
Sbjct: 435 EGL--SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEG-- 490

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            R+ E+  LF LM+  G  P+V+ YN LI+G C   +++ A++L   M   G  PN VTY
Sbjct: 491 -RVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           ++ I  Y  ++ ++ A+ + ++M+  + GV P   +Y  I+  L +  R   A++    +
Sbjct: 550 STLINGYCKISRMEDALVLFKEME--SSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 607

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
            + G+     TY ++   L+   +  L DD L+
Sbjct: 608 TESGTQIELSTYNII---LHGLCKNKLTDDALQ 637



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 14/221 (6%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           +EG V E+   F  M +   +P+V  YN +IN  C  G  ++A  LL  M   G +  P+
Sbjct: 488 KEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLK--PN 545

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
             TY+ LI+ YCK             R+ +A  LF+ M   G  PD++ YN ++ G  +T
Sbjct: 546 TVTYSTLINGYCKI-----------SRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT 594

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R   A EL+  + + G      TYN  +         D A++M + +  ++  +  + +
Sbjct: 595 RRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLE-ART 653

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           +  +I AL + GR  EA+D        G VP  +TY+L+ +
Sbjct: 654 FNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAE 694



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 18/244 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           FLK M   G    V T S+  L+  L + G   EA   F  M +   +P++  Y  ++  
Sbjct: 288 FLKKMRSDGVEPDVVTYSL--LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQG 345

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
               G   +   LL+ M   G    PD Y ++ILI +Y K G           ++ +A  
Sbjct: 346 YATKGALVEMHGLLDLMVRNGIH--PDHYVFSILICAYAKQG-----------KVDQAML 392

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +F  M  +G  P+ V Y  +I   CK+ R+E A+  F+ M  +G  P  + YNS I    
Sbjct: 393 VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC 452

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             N+ ++A E++ +M  L+ G+  ++  +  II + C+ GRV+E+      +V  G  P 
Sbjct: 453 TCNKWERAEELILEM--LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPN 510

Query: 393 EYTY 396
             TY
Sbjct: 511 VITY 514



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 18/228 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  Y ++I   CR G  +     L  +   GFR   D   +T L+   C     +   
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRV--DAIAFTPLLKGLCADKRTSDAM 142

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD---DMNKKGC 318
             + RR+ E           G +P+V +YN L+ G C   R + ALEL     D    G 
Sbjct: 143 DIVLRRMTEL----------GCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGS 192

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
            P+ V+Y + I  +    + DKA     +M  L+ G+ P   +Y  II ALC+A  + +A
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEM--LDRGILPDVVTYNSIIAALCKAQAMDKA 250

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
            + L  +V  G +P   TY  +     ++ +P      L+K   DG+E
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVE 298



 Score = 38.9 bits (89), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 81/223 (36%), Gaps = 28/223 (12%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + +AL  F  M+     PD+  YN+++  L +      A+ L  ++   G +   ++ TY
Sbjct: 562 MEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQI--ELSTY 619

Query: 245 TILISSYCKYGM--------QTGCRKAIR----------------RRIWEANHLFRLMLF 280
            I++   CK  +        Q  C   ++                 R  EA  LF     
Sbjct: 620 NIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSS 679

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G VP+   Y  + +       +E   +LF  M   GC  +    N  +R      EI +
Sbjct: 680 NGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITR 739

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           A   +  +   +  +  S++   +   L   G+  E   FL E
Sbjct: 740 AGTYLSMIDEKHFSLEASTA--SLFIDLLSGGKYQEYYRFLPE 780


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 119/258 (46%), Gaps = 15/258 (5%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N V+     +++M  +G G   T  + T LIK LG+ G V++A + F+ M +  C+PDV 
Sbjct: 279 NKVEAALRLVEEM--KGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVV 336

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
             N +IN L R G    A  L  +M+    +C P+V TY  +I +  +            
Sbjct: 337 LINNLINILGRAGRLEDALKLFGKMD--SLQCAPNVVTYNTVIKAIFESKAPAS------ 388

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
               EA   F  M   G  P    Y  LIDG CKT R+E+AL L ++M++KG  P    Y
Sbjct: 389 ----EAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAY 444

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            S I         + A E+ ++++  N G  ++  Y  +I      GR+ +A D   E+ 
Sbjct: 445 CSLIDSLGRAKRYEAANELFQELKE-NCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMK 503

Query: 386 DGGSVPREYTYKLVCDAL 403
             G  P  YTY  +   +
Sbjct: 504 KLGCSPDVYTYNALMSGM 521



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 126/295 (42%), Gaps = 17/295 (5%)

Query: 117 EFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLI 176
           +F+ W  +   F H+  T   +         V  +W  ++DM R      V  +  + ++
Sbjct: 109 QFFKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCS--VGPAEWSEIL 166

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
           K+LG+  +VN+AL+ FY++K  +C P    YN +I  L   G+  K   L  ++   G  
Sbjct: 167 KILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEG-N 225

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           C PD  TY+ LIS++ K             R   A  LF  M   G  P    Y  ++  
Sbjct: 226 CSPDTITYSALISAFGKL-----------ERYDFAFRLFDEMKENGLHPTEKIYTTILAM 274

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV- 355
             K  ++E AL L ++M  KGC P   TY   I+    V  +D A  +   M  L  G  
Sbjct: 275 YFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNM--LKDGCK 332

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
           P       +I+ L  AGR+ +A     ++      P   TY  V  A+  ++ P+
Sbjct: 333 PDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPA 387



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 114/294 (38%), Gaps = 63/294 (21%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL-------------------- 214
           LI +LG  G + +AL  F +M   +C P+V  YN VI A+                    
Sbjct: 341 LINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKAN 400

Query: 215 ----------------CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG--- 255
                           C+     KA  LLE+M+  GF  PP    Y  LI S  +     
Sbjct: 401 GIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGF--PPCPAAYCSLIDSLGRAKRYE 458

Query: 256 --------MQTGCRKAIRR-------------RIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                   ++  C ++  R             R+ +A  LF  M   G  PDV  YN L+
Sbjct: 459 AANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALM 518

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G  +   I+ A  L  +M + GC P+  ++N  +   +      +AIEM  KM+  +  
Sbjct: 519 SGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKE-SEI 577

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           +P + SY  I+  L  AG    A   + E+   G      TY  + +A+   +E
Sbjct: 578 MPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAVGKVDE 631



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 109/235 (46%), Gaps = 19/235 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F + N V+     L++M  +G       ++   LI  LG       A   F  +K+   R
Sbjct: 416 FCKTNRVEKALLLLEEMDEKGFPP--CPAAYCSLIDSLGRAKRYEAANELFQELKENCGR 473

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
                Y V+I      G  + A  L  +M+  G  C PDVYTY  L+S   + GM     
Sbjct: 474 SSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLG--CSPDVYTYNALMSGMIRAGM----- 526

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I EA+ L R M   G  PD+ ++N +++G  KT   +RA+E+F  M +   +P+
Sbjct: 527 ------IDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPD 580

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
            V+YN+ +   S     + A ++MR+M+ L      S +Y+ I+ A+   G+V E
Sbjct: 581 AVSYNTILSCLSRAGMFEMAAKLMREMK-LKGFEYDSITYSSILEAV---GKVDE 631


>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
          Length = 641

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 140/310 (45%), Gaps = 39/310 (12%)

Query: 101 AYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSR 160
           AY D   V     KA E Y++V + + +F + + C               L + L  + R
Sbjct: 138 AYSDSGLV----EKALELYYFVLKTYTYFPDVIACNS-------------LLNMLVKLGR 180

Query: 161 RGNGELVTTSSVTC-LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
                +      TC ++K L +EG + E            C P++  YN +I+  C+ G+
Sbjct: 181 -----IEIARKFTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGD 235

Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279
              A  L  +++L GF   P V TY  +I+ +CK     G  KAI R + E N       
Sbjct: 236 MEMANGLFIELKLKGFL--PTVETYGAIINGFCK----KGDFKAIDRLLMEMNS------ 283

Query: 280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
            +G   +V  YN +ID   K   I +A+E  + M + GC P+ VTYN+ I       ++ 
Sbjct: 284 -RGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVS 342

Query: 340 KAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           +A +++   Q L  G+ P   SYTP+IHA C+ G    A ++L E+ + G  P   TY  
Sbjct: 343 EADQLLE--QALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGA 400

Query: 399 VCDALNAAEE 408
           +   L  A E
Sbjct: 401 LVHGLVVAGE 410



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 135/320 (42%), Gaps = 45/320 (14%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +  + K +   L +M+ RG    V       +I    + G + +A+ T   M +  C+
Sbjct: 265 FCKKGDFKAIDRLLMEMNSRG--LTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCK 322

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------ 255
           PD+  YN +I+  CR G  ++A  LLEQ    G    P+ ++YT LI +YCK G      
Sbjct: 323 PDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLM--PNKFSYTPLIHAYCKQGGYDRAS 380

Query: 256 ------MQTGCRK------------AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                  + G +              +   +  A  +   ML +G  PD   YN L+ G 
Sbjct: 381 NWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGL 440

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGV 355
           CK +++  A  L  +M  +  +P+   Y + +  +     +D+A ++      + +N G+
Sbjct: 441 CKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGI 500

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415
                Y  +I   C+ G + +A   +  +      P E+TY  V D              
Sbjct: 501 ---VGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGY------------ 545

Query: 416 LRKRIRDGIEYRFRQVMKVK 435
           +++   DG +  FR+++K+K
Sbjct: 546 VKQHDLDGAQKMFREMVKMK 565



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 25/215 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNG-ELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           CK+ G  + R +N      +L +M+ RG+  +LVT  ++   + V GE   V+ AL    
Sbjct: 371 CKQGG--YDRASN------WLIEMTERGHKPDLVTYGALVHGLVVAGE---VDVALTIRE 419

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M +    PD   YN++++ LC+      A+ LL +M        PD + Y  L+  + +
Sbjct: 420 KMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVL--PDAFVYATLVDGFIR 477

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G            + EA  LF L + KG  P +V YN +I G CK   ++ A+   + M
Sbjct: 478 NG-----------NLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRM 526

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            K+   P+  TY++ I  Y   +++D A +M R+M
Sbjct: 527 KKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREM 561



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 13/120 (10%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD + Y  +++   R GN ++AR L E     G    P +  Y  +I  YCK+GM     
Sbjct: 463 PDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMN--PGIVGYNAMIKGYCKFGMMKDAM 520

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             I R           M  +   PD   Y+ +IDG  K + ++ A ++F +M K  C PN
Sbjct: 521 ACINR-----------MKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPN 569


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 130/260 (50%), Gaps = 21/260 (8%)

Query: 147 NVKGLWDFLKDMSRRGNG-ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           +  G   +L+ +  R  G +L+   S   ++  L ++G++  AL  F  M     +PD+ 
Sbjct: 127 DTAGAISYLEKIEGRNRGFDLLIAYST--IMDSLCKDGMLCLALNFFSGMTCKGIQPDLV 184

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           AYN +I+ LC  G +N+A  LL  M   G    P+V T+ +L+ ++CK G          
Sbjct: 185 AYNSLIHGLCSFGRWNEATTLLGNMMRKGIM--PNVQTFNVLVDNFCKEG---------- 232

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            +I  A  +   M+  G  PDVV YN +I G C   ++  A+++F+ M  KG +PN VTY
Sbjct: 233 -KISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTY 291

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           +S I  +     I+KAI ++ +M N  LN  V T   ++ +I   C+AGR   A +    
Sbjct: 292 SSLIHGWCKTRNINKAIFVLDEMVNNGLNLDVVT---WSTLIGGFCKAGRPEAAIELFCT 348

Query: 384 LVDGGSVPREYTYKLVCDAL 403
           + +   +P   T  ++ D L
Sbjct: 349 MHEHHQLPNLQTCAIILDGL 368



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 133/321 (41%), Gaps = 63/321 (19%)

Query: 129 FHNEMTCKEMGI---VFARGNNVKGLWDF---------LKDMSRRGNGELVTTSSVTCLI 176
           F + MTCK  GI   + A  + + GL  F         L +M R+G    V T +V  L+
Sbjct: 170 FFSGMTCK--GIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNV--LV 225

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
               +EG ++ A      M      PDV  YN VI+  C +   N A  + E M   G  
Sbjct: 226 DNFCKEGKISRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLL 285

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
             P+V TY+ LI  +CK            R I +A  +   M+  G   DVV ++ LI G
Sbjct: 286 --PNVVTYSSLIHGWCK-----------TRNINKAIFVLDEMVNNGLNLDVVTWSTLIGG 332

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN---- 352
            CK  R E A+ELF  M++   +PN  T    +          +AI + RKM+ +N    
Sbjct: 333 FCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELN 392

Query: 353 ------------------------HGVPTSS------SYTPIIHALCEAGRVLEARDFLA 382
                                     +P+        +YT +I  LC+ G + +A D L 
Sbjct: 393 IVTYNIVLDGMCSFGKFNDARELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLM 452

Query: 383 ELVDGGSVPREYTYKLVCDAL 403
           ++ + G  P E+TY ++   L
Sbjct: 453 KMEENGCPPNEFTYNVLVRGL 473



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 95/229 (41%), Gaps = 30/229 (13%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M +    P V  +  +IN LC  GN   A    + +E  G+    + YT+  +I+  CK 
Sbjct: 68  MFKIGVEPTVVTFATLINGLCAEGNVGAAARFADSLEDMGYE--SNSYTHGTIINGLCKV 125

Query: 255 GMQTGCRKAI-----RRRIWE--------------------ANHLFRLMLFKGFVPDVVA 289
           G   G    +     R R ++                    A + F  M  KG  PD+VA
Sbjct: 126 GDTAGAISYLEKIEGRNRGFDLLIAYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVA 185

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN LI G C   R   A  L  +M +KG +PN  T+N  +  +    +I +A  +M  M 
Sbjct: 186 YNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMV 245

Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           ++  GV P   +Y  +I   C   ++ +A      ++  G +P   TY 
Sbjct: 246 HV--GVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYS 292



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 15/191 (7%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PDV+T TI+I+  C           ++  ++  + +   M   G  P VV +  LI+G C
Sbjct: 40  PDVHTLTIVINCLCH----------LKHTVFGFS-VLGAMFKIGVEPTVVTFATLINGLC 88

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
               +  A    D +   G   N  T+ + I     V +   AI  + K++  N G    
Sbjct: 89  AEGNVGAAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIEGRNRGFDLL 148

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA----AEEPSLLDD 414
            +Y+ I+ +LC+ G +  A +F + +   G  P    Y  +   L +     E  +LL +
Sbjct: 149 IAYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGN 208

Query: 415 GLRKRIRDGIE 425
            +RK I   ++
Sbjct: 209 MMRKGIMPNVQ 219


>gi|297849764|ref|XP_002892763.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338605|gb|EFH69022.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 804

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 138/287 (48%), Gaps = 16/287 (5%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           GN   GL   LKDM  RG  EL +    + ++  L + G V+EAL+ FY ++ +   PD+
Sbjct: 360 GNIDMGLI-LLKDMLSRGF-ELKSIIPYSVMLSGLCKTGRVDEALSLFYDLEAYGLTPDL 417

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
            AY++VI+ LC++G F+ A  + ++M     R  P+  T   ++   C+ GM        
Sbjct: 418 VAYSIVIHGLCKLGKFDMAVRVYDEMCYK--RILPNSRTLGAIMLGLCQKGM-------- 467

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              + EA  L   ++  G   D++ YN +IDG  K+  IE ALELF    + G  PN  T
Sbjct: 468 ---LLEARSLLDSLISSGDTLDIILYNIVIDGYAKSGCIEEALELFKVAIESGITPNVAT 524

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           +NS I  Y     I +A +++  ++ L   VP+  SYT ++ A    G +    +   E+
Sbjct: 525 FNSLIYGYCKTQNIAEARKILDVIK-LYGLVPSVVSYTTLMDAYANCGSIKSIEELRREM 583

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQV 431
              G  P   TY ++   L    +    +  LR+RI +   +  R +
Sbjct: 584 KAEGIPPTNVTYSVIFKGLCRGWKLENCNQVLRERILEKFNHVLRDM 630



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 121/265 (45%), Gaps = 38/265 (14%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
            + G + EAL  F    +    P+V  +N +I   C+  N  +AR +L+ ++L G    P
Sbjct: 498 AKSGCIEEALELFKVAIESGITPNVATFNSLIYGYCKTQNIAEARKILDVIKLYGL--VP 555

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
            V +YT L+ +Y   G            I     L R M  +G  P  V Y+ +  G C+
Sbjct: 556 SVVSYTTLMDAYANCG-----------SIKSIEELRREMKAEGIPPTNVTYSVIFKGLCR 604

Query: 300 TYRIE--------RALELFD----DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
            +++E        R LE F+    DM  +G  P+++TYN+ I+Y   V  + +A E+ +K
Sbjct: 605 GWKLENCNQVLRERILEKFNHVLRDMESEGITPDQITYNTIIQYLCRVKHLSRAFELFKK 664

Query: 348 M--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           M  QNL+   PTS++Y  +I +LC  G + +A  FL  L        ++ Y  V  A   
Sbjct: 665 MKSQNLD---PTSATYNILIDSLCIYGCIRKADRFLYSLQKRNVSLSKFAYTTVIKAHCV 721

Query: 406 AEEP--------SLLDDGLRKRIRD 422
             +P         LLD G    IRD
Sbjct: 722 KGDPEMAVILFNQLLDRGFNVSIRD 746



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 16/185 (8%)

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           + Y+ V++ LCR      A   L   E       P V ++  ++SSYCK G         
Sbjct: 207 HTYSTVVDGLCRQQKLEDAVLFLRTSEWKDI--GPSVVSFNSIMSSYCKLGF-------- 256

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              +  A   F  +L  G VP V ++N LI+G C    I  ALEL  DMNK G  P+ VT
Sbjct: 257 ---VDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVT 313

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAE 383
           YN  ++ + ++  I  A E+++ M  L+ G+ P   +YT ++   C+ G +      L +
Sbjct: 314 YNILVKGFHLLGMISGAGEVIQDM--LDKGLSPDVITYTILLCGQCQLGNIDMGLILLKD 371

Query: 384 LVDGG 388
           ++  G
Sbjct: 372 MLSRG 376



 Score = 38.9 bits (89), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 21/170 (12%)

Query: 155 LKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           L+DM   G    +T   +T   +I+ L     ++ A   F +MK     P    YN++I+
Sbjct: 627 LRDMESEG----ITPDQITYNTIIQYLCRVKHLSRAFELFKKMKSQNLDPTSATYNILID 682

Query: 213 ALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           +LC  G   KA RFL     L         + YT +I ++C  G               A
Sbjct: 683 SLCIYGCIRKADRFL---YSLQKRNVSLSKFAYTTVIKAHCVKGDPE-----------MA 728

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
             LF  +L +GF   +  Y+ +I+  C+ +    +   F  M  +G  P+
Sbjct: 729 VILFNQLLDRGFNVSIRDYSAVINRLCRRHLAIESKYFFCLMLSRGISPD 778


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M     +PDVY Y+V+IN LC+    N A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G            I  A   ++ ML +GF PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKTG-----------SIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A +  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC  G+ + A   L E++  G  P   TY ++ +      +  +    L++  RD
Sbjct: 351 ALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 14/195 (7%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           GNG +    + T LI    + G ++ A+  +  M +    PD+  YN +I  LC+ G+  
Sbjct: 234 GNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLK 293

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A+ L+++M + G +  PD  TYT LI   CK G      K  +R I E   L       
Sbjct: 294 QAQDLIDEMSMKGLK--PDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRL------- 344

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
               D VAY  LI G C+  +   A ++  +M   G  P+  TY   I  +    ++   
Sbjct: 345 ----DDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMG 400

Query: 342 IEMMRKMQNLNHGVP 356
            +++++MQ   H VP
Sbjct: 401 SKLLKEMQRDGH-VP 414


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 119/258 (46%), Gaps = 31/258 (12%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G  +   +   ++  + + G    AL    +M++   +PDV  Y+ +I+ LC+ G+ +
Sbjct: 254 GKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHS 313

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------------- 266
            A++L  +M   G    P+V+TY  +I  +C +G  +  ++ +R                
Sbjct: 314 DAQYLFSEMLEKGI--APNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNA 371

Query: 267 ---------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    +++EA  L   ML +   PD V YN +I G CK  R + A  +FD M    
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-- 429

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P+ VT+N+ I  Y     +D+ ++++R++      V  +++Y  +IH  CE   +  A
Sbjct: 430 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL-VANTTTYNTLIHGFCEVDNLNAA 486

Query: 378 RDFLAELVDGGSVPREYT 395
           +D   E++  G  P   T
Sbjct: 487 QDLFQEMISHGVCPDTIT 504



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 112/275 (40%), Gaps = 59/275 (21%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  EG V EA A   +M       DV  Y  ++N +C++G+   A  LL +ME   
Sbjct: 232 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 291

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PDV  Y+ +I   CK G  +           +A +LF  ML KG  P+V  YNC+I
Sbjct: 292 IK--PDVVIYSAIIDRLCKDGHHS-----------DAQYLFSEMLEKGIAPNVFTYNCMI 338

Query: 295 DGCCKTYR-----------IER------------------------ALELFDDMNKKGCI 319
           DG C   R           IER                        A +L D+M  +   
Sbjct: 339 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 398

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ VTYNS I  +   N  D A  M   M +     P   ++  II   C A RV E   
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-----PDVVTFNTIIDVYCRAKRVDEGMQ 453

Query: 380 FLAELVDGGSVPREYTYKLV------CDALNAAEE 408
            L E+   G V    TY  +       D LNAA++
Sbjct: 454 LLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 488



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 114/230 (49%), Gaps = 33/230 (14%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +I  L ++G  ++A   F  M +    P+V+ YN +I+  C  G ++ A+ LL  M  
Sbjct: 300 SAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM-- 357

Query: 233 PGFRCPPDVYTYTILISSYCKYG----MQTGCRKAIRRRIW------------------- 269
                 PDV T+  LIS+  K G     +  C + + R I+                   
Sbjct: 358 IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRF 417

Query: 270 -EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +A H+F LM      PDVV +N +ID  C+  R++  ++L  +++++G + N  TYN+ 
Sbjct: 418 DDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 473

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
           I  +  V+ ++ A ++ ++M  ++HGV P + +   +++  CE  ++ EA
Sbjct: 474 IHGFCEVDNLNAAQDLFQEM--ISHGVCPDTITCNILLYGFCENEKLEEA 521



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 14/219 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+E +     + +     +   YN +I+  C V N N A+ L ++M   G    PD  T 
Sbjct: 448 VDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV--CPDTITC 505

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            IL+  +C+             ++ EA  LF ++       D VAYN +I G CK  +++
Sbjct: 506 NILLYGFCE-----------NEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVD 554

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A +LF  +   G  P+  TYN  I  +   + I  A  +  KM++  H  P +S+Y  +
Sbjct: 555 EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHE-PDNSTYNTL 613

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           I    +AG + ++ + ++E+   G     +T K+V D +
Sbjct: 614 IRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLI 652



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 112/249 (44%), Gaps = 27/249 (10%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A++ + +M+  R   ++Y++N++I   C     + +     ++   GF+  PDV T+  L
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQ--PDVVTFNTL 182

Query: 248 ISSYC------------KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           +   C             Y ++TG          EA  LF  M+  G  P V+ +N LI+
Sbjct: 183 LHGLCLEDRISEALALFGYMVETG--------FLEAVALFDQMVEIGLTPVVITFNTLIN 234

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G C   R+  A  L + M  KG   + VTY + +     + +   A+ ++ KM+   H  
Sbjct: 235 GLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEE-THIK 293

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA----AEEPSL 411
           P    Y+ II  LC+ G   +A+   +E+++ G  P  +TY  + D   +    ++   L
Sbjct: 294 PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 353

Query: 412 LDDGLRKRI 420
           L D + + I
Sbjct: 354 LRDMIEREI 362



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 99/234 (42%), Gaps = 17/234 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V+ R   V      L+++SRRG   +  T++   LI    E   +N A   F  M     
Sbjct: 441 VYCRAKRVDEGMQLLREISRRG--LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD    N+++   C      +A  L E +++   +   D   Y I+I   CK       
Sbjct: 499 CPDTITCNILLYGFCENEKLEEALELFEVIQMS--KIDLDTVAYNIIIHGMCK------- 549

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA  LF  +   G  PDV  YN +I G C    I  A  LF  M   G  P
Sbjct: 550 ----GSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEP 605

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           +  TYN+ IR      EIDK+IE++ +M+  ++G    +    ++  L   GR+
Sbjct: 606 DNSTYNTLIRGCLKAGEIDKSIELISEMR--SNGFSGDAFTIKMVADLITDGRL 657


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 14/242 (5%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+G L    +   LI  L +   +  A      M  F   P+++ YN +I+  C+ GN +
Sbjct: 291 GDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLS 350

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A  L  ++E       PDV+TY+ILI   C              R+ EA+ L + M  K
Sbjct: 351 EALSLHSEIE--KHEILPDVFTYSILIKGLCGVD-----------RMEEADGLLQEMKKK 397

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           GF+P+ V YN LIDG CK   +E+A+E+   M +KG  PN +T+++ I  Y    +++ A
Sbjct: 398 GFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAA 457

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           + +  +M  +   +P   +YT +I    + G   EA     E+ + G  P  +T   + D
Sbjct: 458 MGLYTEMV-IKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLID 516

Query: 402 AL 403
            L
Sbjct: 517 GL 518



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 111/242 (45%), Gaps = 23/242 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    E GLV EAL  +Y+M      P + A N+V++ L + G F+    +   M   G
Sbjct: 132 LIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARG 188

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V TY  LI   C+ G              +A  LF  M+ K   P VV Y  LI
Sbjct: 189 --ASPNVVTYGTLIDGCCRQG-----------DFLKAFRLFDEMIEKKIFPTVVIYTILI 235

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   RI  A  +F  M   G +PN  TYN+ +  Y  +  + KA+E+  +M  L  G
Sbjct: 236 RGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEM--LGDG 293

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEP 409
            +P   ++  +I  LC+   ++ AR FL ++   G VP  + Y  +    C A N +E  
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEAL 353

Query: 410 SL 411
           SL
Sbjct: 354 SL 355



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 117/266 (43%), Gaps = 51/266 (19%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+ L  E  ++EA + F  M+     P++Y YN +++  C++ +  KA  L  +M  
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLG 291

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P+V T+ ILI   CK       RK           L  +  F G VP++  YNC
Sbjct: 292 DGLL--PNVVTFGILIDGLCKTDEMVSARK----------FLIDMASF-GVVPNIFVYNC 338

Query: 293 LIDGCCK------------------------TY-----------RIERALELFDDMNKKG 317
           LIDG CK                        TY           R+E A  L  +M KKG
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKG 398

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLE 376
            +PN VTYN+ I  Y     ++KAIE+  +M     G+ P   +++ +I   C+AG++  
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMT--EKGIEPNIITFSTLIDGYCKAGKMEA 456

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDA 402
           A     E+V  G +P    Y  + D 
Sbjct: 457 AMGLYTEMVIKGLLPDVVAYTALIDG 482



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 113/258 (43%), Gaps = 38/258 (14%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CLI    + G ++EAL+    +++    PDV+ Y+++I  LC V    +A  LL++M+  
Sbjct: 338 CLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKK 397

Query: 234 GFRCPPDVYTYTILISSYCKYG-MQTG---CRKAIRR--------------------RIW 269
           GF   P+  TY  LI  YCK G M+     C +   +                    ++ 
Sbjct: 398 GFL--PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKME 455

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            A  L+  M+ KG +PDVVAY  LIDG  K    + A  L  +M + G  PN  T +  I
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515

Query: 330 RYYSVVNEIDKAIEMM----------RKMQNLNHGV--PTSSSYTPIIHALCEAGRVLEA 377
                   I  AI++            K   L+  +  P    YT +I  LC  GR+ +A
Sbjct: 516 DGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKA 575

Query: 378 RDFLAELVDGGSVPREYT 395
             F +++   G  P  +T
Sbjct: 576 SKFFSDMRCSGLRPDVFT 593



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 74/191 (38%), Gaps = 22/191 (11%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + T LI    ++G   EA      M++    P+V+  + +I+ LC+ G  + A
Sbjct: 468 GLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDA 527

Query: 224 -RFLLEQM----------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            +  L +           EL    C P+   YT LI   C  G           RI++A+
Sbjct: 528 IKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDG-----------RIFKAS 576

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
             F  M   G  PDV     +I G  +   +   + L  D+ K G IPN   Y    + Y
Sbjct: 577 KFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGY 636

Query: 333 SVVNEIDKAIE 343
                +  A+ 
Sbjct: 637 EESGYLKSALS 647



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 33/215 (15%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           N+AL  F +M+    +PD+    V ++A   +G  +   ++   +   G     D+    
Sbjct: 731 NKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGL--DTDLCLNN 788

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            LI+ Y K G          RR+++               DV  +  +I G     + E 
Sbjct: 789 SLINMYSKCG-----EIGTARRLFDGTQ----------KKDVTTWTSMIVGHALHGQAEE 833

Query: 306 ALELFDDM---NKKG-------------CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           AL+LF +M   NK+               +PN VT+   +   S    +++  +  R M+
Sbjct: 834 ALQLFTEMKETNKRARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMK 893

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
                 P  S +  ++  LC AG + EA +F+ ++
Sbjct: 894 EDYSLRPRISHFGCMVDLLCRAGLLTEAYEFILKM 928


>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 484

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 135/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+EG+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D  + ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDXLRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKEGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +    + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDXLRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++ L     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDXLRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G            +  A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLISSHCKSG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGXLIENFCKAGQYDKAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L   G
Sbjct: 362 QSTL-HLEP--SAYNPMIEYLCNNGQAXKAETLVRQLXKLG 399


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 14/204 (6%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           RM +  C+PD+++Y +++  LC      +A  LL  M     RCP DV  YT +I+   +
Sbjct: 160 RMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLR 219

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           ++ +A  LF  ML +G  PDVV Y+ +I    KT  +++A ++F  M
Sbjct: 220 EG-----------QLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRM 268

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
            K G +P+ + Y S +  Y    +  +AI + +KM    HGV P   +YT ++  LC+ G
Sbjct: 269 VKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKM--CRHGVEPDVVTYTALMDYLCKNG 326

Query: 373 RVLEARDFLAELVDGGSVPREYTY 396
           +  EAR     LV  G  P   TY
Sbjct: 327 KSTEARKIFDSLVKRGHKPDSTTY 350



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 37/230 (16%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+EAL  F  M+Q    PD+  Y  V++ LC  G  + A      ++  G    P++  +
Sbjct: 398 VDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGL--APNIVVF 455

Query: 245 TILISSYCKYG---------------------------MQTGCRKAIRRRIWEANHLFRL 277
           T LI   C                              M   C+K    R+ EA +LF L
Sbjct: 456 TTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKG---RVIEAKNLFDL 512

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+  G  P+   YN LIDG C   +++ A++L   M   G  P+ VTYN+ I  YS    
Sbjct: 513 MVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGR 572

Query: 338 IDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           I+  + ++R+M  + +N G+ T   Y  ++  L +AGR + A++    ++
Sbjct: 573 IEDGLTLLREMDGKGVNPGIVT---YEMLLQGLFQAGRTVAAKELYLRMI 619



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 115/265 (43%), Gaps = 29/265 (10%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG +      T L+      G   EA+  F +M +    PDV  Y  +++ LC+ G   +
Sbjct: 271 NGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTE 330

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYC----------------KYGMQTGCR----- 261
           AR + + +   G +  PD  TY  L+  Y                 K GMQ G       
Sbjct: 331 ARKIFDSLVKRGHK--PDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMI 388

Query: 262 ---KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
               A   ++ EA  +F  M  +G  PD+V Y  ++D  C   R++ AL  F+ +  +G 
Sbjct: 389 MGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGL 448

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY-TPIIHALCEAGRVLEA 377
            PN V + + I      ++ DK  E+  +M  ++ G+   + +   I+  LC+ GRV+EA
Sbjct: 449 APNIVVFTTLIHGLCTCDKWDKVEELAFEM--IDRGICLDTIFFNAIMGNLCKKGRVIEA 506

Query: 378 RDFLAELVDGGSVPREYTYKLVCDA 402
           ++    +V  G  P   TY  + D 
Sbjct: 507 KNLFDLMVRIGIEPNTNTYNTLIDG 531



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 109/250 (43%), Gaps = 25/250 (10%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I  L  EG +++A + F  M      PDV  Y+ +I+AL +    +KA  +  +M  
Sbjct: 211 TTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVK 270

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PD   YT L+  YC  G           +  EA  +F+ M   G  PDVV Y  
Sbjct: 271 NGVM--PDCIMYTSLVHGYCSSG-----------KPKEAIGIFKKMCRHGVEPDVVTYTA 317

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY----SVVNEIDKAIEMMRKM 348
           L+D  CK  +   A ++FD + K+G  P+  TY + +  Y    ++V   D    MM+K 
Sbjct: 318 LMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKG 377

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
             L H +     +  I+ A  +  +V EA    + +   G  P    Y  V D L  A  
Sbjct: 378 MQLGHHI-----FNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGR 432

Query: 409 PSLLDDGLRK 418
              +DD L +
Sbjct: 433 ---VDDALSQ 439



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 114/274 (41%), Gaps = 54/274 (19%)

Query: 188 ALATFYRMKQF---RCRPDVYAYNVVINALCRVGNFNKA--------------------- 223
           A++ F RM +       P++  Y +VI    R+G  + A                     
Sbjct: 80  AISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSP 139

Query: 224 --------RFLLEQME-----LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
                   R   + M+     +P   C PD+++YTIL+   C             +   +
Sbjct: 140 LLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCD-----------DKTSQQ 188

Query: 271 ANHLFRLML-FKGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
           A  L  +M   KG  P DVVAY  +I+G  +  ++++A  LFD M  +G  P+ VTY+S 
Sbjct: 189 ALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSI 248

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           I   S    +DKA ++  +M   N  +P    YT ++H  C +G+  EA     ++   G
Sbjct: 249 ISALSKTQAMDKATQVFTRMVK-NGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHG 307

Query: 389 SVPREYTYKLVCDAL---NAAEEPSLLDDGLRKR 419
             P   TY  + D L     + E   + D L KR
Sbjct: 308 VEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKR 341


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 130/248 (52%), Gaps = 21/248 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + +AL  F  M    C P V  YN +IN L +   F++A  L+++M   G++  P++ TY
Sbjct: 455 LEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWK--PNMITY 512

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           ++L++  C+            +++  A +L+   L KGF PDV  +N +I G C + ++E
Sbjct: 513 SLLMNGLCQ-----------GKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVE 561

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            AL+L+ +M ++ C+PN VT+N+ +  +  V + ++A ++   +  L +G+ P   SY  
Sbjct: 562 DALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHI--LQYGLQPDIISYNI 619

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD---ALNAAEEPSLLDDGLRKRI 420
            +  LC   R+ +A  FL + VD G +P   T+ ++     AL    EP  +   ++   
Sbjct: 620 TLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQGYLALKGYMEPVFVPASMKG-- 677

Query: 421 RDGIEYRF 428
             G++ R+
Sbjct: 678 NPGMQMRY 685



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 126/287 (43%), Gaps = 32/287 (11%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + R   ++   +  K M + G     T  S   LI+ L E   V+EA++ +  + +  C 
Sbjct: 310 YLRAGRIEECLELWKVMEKEG---CRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCC 366

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------ 255
            D   Y V+++ LC+ G  NKA  +LE+ E    R   D + Y+ +I+  C+ G      
Sbjct: 367 ADSMTYGVLVHGLCKNGYLNKALSILEEAE--NGRGDLDTFAYSSMINGLCREGRLDEVA 424

Query: 256 ------MQTGCR------KAI------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                  + GC+       A+        ++ +A   F  M+ KG  P VV YN LI+G 
Sbjct: 425 GVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGL 484

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-P 356
            K  R   A  L  +M +KG  PN +TY+  +       ++D A+ +    Q L  G  P
Sbjct: 485 SKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLW--CQALEKGFKP 542

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
               +  IIH LC +G+V +A    +E+     VP   T+  + +  
Sbjct: 543 DVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGF 589



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 127/293 (43%), Gaps = 37/293 (12%)

Query: 118 FYHWVERFFD-------FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
           F+H ++R FD       +  N M  + + I F R + + G    ++              
Sbjct: 46  FHHILKRLFDPKLVAHAYAKNSMPDQALDI-FQRMHEIFGCQPGIR-------------- 90

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L+  L E    +EA + F   +     P++  YN++I   CR   F+KA+ LL  M
Sbjct: 91  SYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 150

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              GF   PDV++Y  LI+S  K G  +           +A  LF  M  +G  PDV  Y
Sbjct: 151 WGQGFS--PDVFSYGTLINSLAKNGYMS-----------DALKLFDEMPERGVTPDVACY 197

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           N LIDG  K   I  A E+++ + K   + PN  +YN  I       + D++ E+  +M+
Sbjct: 198 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 257

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
               G     +Y+ +IH LC +G +  A     E+ + G  P    Y  + + 
Sbjct: 258 KNERGQDL-YTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNG 309



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 133/279 (47%), Gaps = 26/279 (9%)

Query: 142 FARGN--NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           F +G+  N   +W+ L     +G        S   +I  L + G  +E+   ++RMK+  
Sbjct: 205 FKKGDILNASEIWERL----LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNE 260

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
              D+Y Y+ +I+ LC  GN + A  + ++M   G    PDV  Y  +++ Y + G    
Sbjct: 261 RGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENG--VSPDVVVYNTMLNGYLRAG---- 314

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  RI E   L+++M  +G    VV+YN LI G  +  +++ A+ +++ + +K C 
Sbjct: 315 -------RIEECLELWKVMEKEG-CRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCC 366

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
            + +TY   +        ++KA+ ++ + +N   G   + +Y+ +I+ LC  GR+ E   
Sbjct: 367 ADSMTYGVLVHGLCKNGYLNKALSILEEAEN-GRGDLDTFAYSSMINGLCREGRLDEVAG 425

Query: 380 FLAELVDGGSVPREYTYKLVCDA-LNAAEEPSLLDDGLR 417
            L ++   G  P  Y    VC+A +N     S L+D LR
Sbjct: 426 VLDQMTKHGCKPNPY----VCNAVINGFVRASKLEDALR 460



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 14/219 (6%)

Query: 186 NEALATFYRMKQ-FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++AL  F RM + F C+P + +YN ++NAL     +++A       E  G    P++ TY
Sbjct: 70  DQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLS--PNLQTY 127

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI        +  CRK   ++  +A  L   M  +GF PDV +Y  LI+   K   + 
Sbjct: 128 NILI--------KISCRK---KQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMS 176

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            AL+LFD+M ++G  P+   YN  I  +    +I  A E+  ++       P   SY  +
Sbjct: 177 DALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVM 236

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           I+ LC+ G+  E+ +    +         YTY  +   L
Sbjct: 237 INGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGL 275



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 116/266 (43%), Gaps = 27/266 (10%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G      S   LI  L + G +++AL  F  M +    PDV  YN++I+   + G+  
Sbjct: 152 GQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDIL 211

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-----MQTGCRKAIRRRIWE------ 270
            A  + E++ L G    P++ +Y ++I+  CK G      +   R     R  +      
Sbjct: 212 NASEIWERL-LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYST 270

Query: 271 -------------ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                        A  +++ M   G  PDVV YN +++G  +  RIE  LEL+  M K+G
Sbjct: 271 LIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG 330

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
           C    V+YN  IR      ++D+AI +   +         S +Y  ++H LC+ G + +A
Sbjct: 331 C-RTVVSYNILIRGLFENAKVDEAISIWELLPE-KDCCADSMTYGVLVHGLCKNGYLNKA 388

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
              L E  +G      + Y  + + L
Sbjct: 389 LSILEEAENGRGDLDTFAYSSMINGL 414



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 13/122 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L   G V +AL  +  MKQ  C P++  +N ++    +V +F +A  + + +   G
Sbjct: 550 IIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYG 609

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PD+ +Y I +   C       C      RI +A       + +G +P  + +N L+
Sbjct: 610 LQ--PDIISYNITLKGLCS------C-----HRISDAVGFLNDAVDRGVLPTAITWNILV 656

Query: 295 DG 296
            G
Sbjct: 657 QG 658


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 108/217 (49%), Gaps = 14/217 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M + G    P+  
Sbjct: 180 GDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGL--VPNXV 237

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +  +PD++ YN L+ G CK   
Sbjct: 238 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGD 286

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           + +A  L D+M  KG  P++ TY + I       ++D A E  ++M   N  +    +YT
Sbjct: 287 LNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLD-DVAYT 345

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +I  LC+ GR  +A   L E++  G  P   TY ++
Sbjct: 346 ALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMI 382



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 20/202 (9%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A  + + +   G R  P V +Y  L++ Y + G        
Sbjct: 131 LYFFNILMHRFCKDGDIRVAPLVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 180

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK   ++ A ELFD+M  KG +P
Sbjct: 181 ------DLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVP 234

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N VT+ + I  +     +D A+E+ ++M +    +P   +Y  +++ LC+ G + +A   
Sbjct: 235 NXVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QXLLPDJITYNTLVYGLCKKGDLNQAHGL 293

Query: 381 LAELVDGGSVPREYTYKLVCDA 402
           + E+   G  P ++TY  + D 
Sbjct: 294 IDEMXXKGLKPDKFTYTTLIDG 315



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 14/197 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN ++  LC+ G+ N+A  L+++M
Sbjct: 238 TFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEM 297

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +  PD +TYT LI   CK G      +  +R I E   L           D VAY
Sbjct: 298 XXKGLK--PDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRL-----------DDVAY 344

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ 
Sbjct: 345 TALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 404

Query: 351 LNHGVPTSSSYTPIIHA 367
             H VP   +Y  +++ 
Sbjct: 405 NGH-VPXVVTYNVLMNG 420


>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
 gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
          Length = 695

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 120/254 (47%), Gaps = 28/254 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G++ EA +   RM Q  C P+V +YN++I+  C+  N  KA   L +ME  G
Sbjct: 16  LISCLCKAGMLAEAESYLKRMPQ-HCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELG 74

Query: 235 FRCPPDVYTYTILISSYCKYGMQT------------GCRKAI------------RRRIWE 270
              PP  + Y+ ++ S+CK G  +            GC   I             R+I E
Sbjct: 75  H--PPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHE 132

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  LFR M  +G  PDVV YN +I G CK  +++ A+ L + M ++   P  VTY + I 
Sbjct: 133 ARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLID 192

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
           +      + +A E+  KM        T  +Y+ + + L  AG+++EA    +++      
Sbjct: 193 HLCKFTRLQQAYEVFEKMAE-GPCACTEPAYSVLFNKLQRAGKLVEASRVYSDMCRKNVC 251

Query: 391 PREYTYKLVCDALN 404
             + TY LV   L+
Sbjct: 252 MTDNTYSLVVLGLS 265



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 38/250 (15%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-------- 253
           P+   YN +I+ LC+ G   +A   L++M      C P+V +Y I+I  YCK        
Sbjct: 8   PNAILYNNLISCLCKAGMLAEAESYLKRMPQ---HCAPNVVSYNIIIDGYCKARNIEKAL 64

Query: 254 -----------------YG--MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                            Y   +Q+ C+      + +A  +F  M  KG  PD+V +N L+
Sbjct: 65  AFLREMEELGHPPTPHAYSSIVQSFCKTG---NVSKAMDVFAEMPAKGCEPDIVNFNVLL 121

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G  +  +I  A ELF  MN +GC P+ VTYN+ I       ++D+A+ ++ +M+  +  
Sbjct: 122 SGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVS 181

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA----EEPS 410
            PT  +YT +I  LC+  R+ +A +   ++ +G     E  Y ++ + L  A    E   
Sbjct: 182 -PTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQRAGKLVEASR 240

Query: 411 LLDDGLRKRI 420
           +  D  RK +
Sbjct: 241 VYSDMCRKNV 250



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 122/270 (45%), Gaps = 17/270 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + +  N++    FL++M   G+    T  + + +++   + G V++A+  F  M    C 
Sbjct: 54  YCKARNIEKALAFLREMEELGHPP--TPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCE 111

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  +NV+++ L R    ++AR L   M   G  C PDV TY  +I+  CK+       
Sbjct: 112 PDIVNFNVLLSGLWRARKIHEARELFRSMNSRG--CKPDVVTYNTMIAGLCKW------- 162

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               +++ EA  L   M  +   P  V Y  LID  CK  R+++A E+F+ M +  C   
Sbjct: 163 ----KKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACT 218

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLEARDF 380
              Y+          ++ +A  +   M   N  + T ++Y+ ++  L +  G  +EA   
Sbjct: 219 EPAYSVLFNKLQRAGKLVEASRVYSDMCRKNVCM-TDNTYSLVVLGLSKMDGGNVEAAKL 277

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPS 410
           + E++     P  Y Y ++ + L  A  P 
Sbjct: 278 VTEMMGKKIAPDFYAYSILINGLCKARRPG 307



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 114/257 (44%), Gaps = 31/257 (12%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           +  ++M  RG    V T + T L  +L    L +    T++ + Q R  PD  +YN++I 
Sbjct: 311 EMFQEMRGRGISPTVVTYN-TLLEGLLSTAKLQDAMELTYFMLDQGRL-PDTCSYNLMIR 368

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             C  G+ N+A  L + M   G     + +TY  +I  +            I+   W + 
Sbjct: 369 GFCANGDTNEAYCLFQDMIKDGIVL--NTWTYNFMIVGF------------IKDEAWSSA 414

Query: 273 HLFRLMLFKGF---------VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
                MLFK            P++  Y  LI   CKT ++E A +L   M  KG +P+  
Sbjct: 415 ----WMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLK 470

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
            +   +   +    +D A E+ ++M  +N      SS   ++  +   G V EA+DFL +
Sbjct: 471 IWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSS-NILLDGILRRGSVDEAKDFLKQ 529

Query: 384 LVDGGSVPREYTY-KLV 399
           + D G VP ++TY KLV
Sbjct: 530 MTDTGIVPDKFTYDKLV 546



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 109/245 (44%), Gaps = 14/245 (5%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
            G L  T S   +I+     G  NEA   F  M +     + + YN +I    +   ++ 
Sbjct: 354 QGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMIVGFIKDEAWSS 413

Query: 223 ARFLLEQMEL-PGFRCP-PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           A  L ++M+     + P P+++TY ILISS CK             ++ EA  L   M  
Sbjct: 414 AWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTD-----------QVEEAFKLLSAMRD 462

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           KGFVP +  +  L+    +  R++ A EL+ +M++  C     + N  +        +D+
Sbjct: 463 KGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDE 522

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A + +++M +    VP   +Y  ++  LC  G+  +AR  + ELV  G  P     + + 
Sbjct: 523 AKDFLKQMTDTGI-VPDKFTYDKLVVGLCWQGKADQARKLVEELVRDGKRPENQGLRQLL 581

Query: 401 DALNA 405
            AL A
Sbjct: 582 GALCA 586



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 117/288 (40%), Gaps = 43/288 (14%)

Query: 148 VKGLW---------DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
           + GLW         +  + M+ RG    V T +   +I  L +   ++EA+    RMKQ 
Sbjct: 121 LSGLWRARKIHEARELFRSMNSRGCKPDVVTYNT--MIAGLCKWKKLDEAVFLLERMKQE 178

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQM-ELPGFRCPPDVYTYTILISSYCKYG-- 255
              P    Y  +I+ LC+     +A  + E+M E P   C      Y++L +   + G  
Sbjct: 179 DVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGP---CACTEPAYSVLFNKLQRAGKL 235

Query: 256 ------MQTGCRKAI-----------------RRRIWEANHLFRLMLFKGFVPDVVAYNC 292
                     CRK +                      EA  L   M+ K   PD  AY+ 
Sbjct: 236 VEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKKIAPDFYAYSI 295

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI+G CK  R   A E+F +M  +G  P  VTYN+ +       ++  A+E+   M  L+
Sbjct: 296 LINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFM--LD 353

Query: 353 HG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            G +P + SY  +I   C  G   EA     +++  G V   +TY  +
Sbjct: 354 QGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFM 401



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 2/126 (1%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           ML  G  P+ + YN LI   CK   +  A      M +  C PN V+YN  I  Y     
Sbjct: 1   MLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQH-CAPNVVSYNIIIDGYCKARN 59

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           I+KA+  +R+M+ L H  PT  +Y+ I+ + C+ G V +A D  AE+   G  P    + 
Sbjct: 60  IEKALAFLREMEELGHP-PTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFN 118

Query: 398 LVCDAL 403
           ++   L
Sbjct: 119 VLLSGL 124



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 19/182 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
            AR   +   ++  K+MSR    +LV +S++  L+  +   G V+EA     +M      
Sbjct: 479 LARAGRLDDAFELYKEMSRINCQQLVGSSNI--LLDGILRRGSVDEAKDFLKQMTDTGIV 536

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD + Y+ ++  LC  G  ++AR L+E++   G R  P+      L+ + C  G   G  
Sbjct: 537 PDKFTYDKLVVGLCWQGKADQARKLVEELVRDGKR--PENQGLRQLLGALCAQGDFQG-- 592

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                    A   +  +   G    +  +N L+  CC    + R L+  D + ++  +P+
Sbjct: 593 ---------AYEFYCWLPSVGVEVTLGMHNTLVTSCC----LARKLDYLDMIEQREGVPD 639

Query: 322 RV 323
            +
Sbjct: 640 VI 641


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 133/294 (45%), Gaps = 53/294 (18%)

Query: 158 MSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           M R+  G+LV+T  V  + +I  L ++ LVN+A   +  M   R  P V   N +I   C
Sbjct: 198 MLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYC 257

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE----- 270
            VG F +A  LL +M L      PDVYT+ IL+ + CK G     +  I   + E     
Sbjct: 258 IVGQFKEAFGLLREMVLKNIN--PDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPD 315

Query: 271 -------------------ANHLFRLMLFKGF---------------------VPDVVAY 290
                              A H++ +++  GF                      PD V Y
Sbjct: 316 VVTYSSLMDGYCLVNEVNKAKHVYSIVI-NGFCKIKMVDKALSLFYEMRCRRIAPDTVTY 374

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LIDG CK+ RI  A EL D+M   G   + +TYNS I      + +DKAI +++K++ 
Sbjct: 375 NSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIK- 433

Query: 351 LNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            + G+     +Y  +I  LC+ GR+ +A+    +L+  G     +TY ++ + L
Sbjct: 434 -DQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGL 486



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 14/205 (6%)

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           +V++AL+ FY M+  R  PD   YN +I+ LC+ G  + A  L+++M   G   P D+ T
Sbjct: 351 MVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSG--QPADIIT 408

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           Y  LI + CK              + +A  L + +  +G   D+  YN LIDG CK  R+
Sbjct: 409 YNSLIDALCK-----------NHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRL 457

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           + A  +F D+  KG      TY   I    +   +++A  ++ KM++ N  VP + +   
Sbjct: 458 KDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMED-NGCVPDAVTCET 516

Query: 364 IIHALCEAGRVLEARDFLAELVDGG 388
           II AL E  +   A   L E++  G
Sbjct: 517 IIRALFENDKNERAEKLLREMIARG 541



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 111/243 (45%), Gaps = 35/243 (14%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
            ++ FY+++    +P++ + +++IN  C +G    A  +  ++   G+   P+  T T L
Sbjct: 90  VISLFYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFSIFAKILKMGYH--PNTITLTTL 147

Query: 248 ISSYC-------------------------KYG-MQTGCRKAIRRRIWEANHLFRLMLFK 281
           +  +C                          YG +  G  K    R   A  + R +  K
Sbjct: 148 VKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLINGLCKIGETR--AALQMLRQIEGK 205

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
               DVV Y+ +IDG CK   +  A EL+ +M  K   P  VT NS I  Y +V +  +A
Sbjct: 206 LVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEA 265

Query: 342 IEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             ++R+M  +N+N   P   ++  ++ ALC+ G++ EA+  +A ++  G +P   TY  +
Sbjct: 266 FGLLREMVLKNIN---PDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSL 322

Query: 400 CDA 402
            D 
Sbjct: 323 MDG 325



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 118/274 (43%), Gaps = 47/274 (17%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++ +++F+RM      P V  +  ++++L ++ ++     L  Q+E  G +  P++ + 
Sbjct: 52  VDDLVSSFHRMLLLNPAPSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIK--PNIVSL 109

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           +ILI+ YC  G           ++  A  +F  +L  G+ P+ +    L+ G C  ++++
Sbjct: 110 SILINCYCHLG-----------QMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVK 158

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ------------NLN 352
            AL   D +   G   N+V+Y + I     + E   A++M+R+++             + 
Sbjct: 159 EALHFHDHVLALGFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTII 218

Query: 353 HGV----------------------PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            G+                      PT  +   +I+  C  G+  EA   L E+V     
Sbjct: 219 DGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNIN 278

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           P  YT+ ++ DAL    +      G+   +++G+
Sbjct: 279 PDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGV 312



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 17/167 (10%)

Query: 152 WDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           W+ + +M   G   +++T +S   LI  L +   V++A+A   ++K    + D+Y YN++
Sbjct: 391 WELVDEMRDSGQPADIITYNS---LIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNIL 447

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           I+ LC+ G    A+ + + + + G+     V+TYTI+I+  C  G+           + E
Sbjct: 448 IDGLCKQGRLKDAQVIFQDLLIKGYNLT--VWTYTIMINGLCLEGL-----------LNE 494

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
           A  L   M   G VPD V    +I    +  + ERA +L  +M  +G
Sbjct: 495 AETLLSKMEDNGCVPDAVTCETIIRALFENDKNERAEKLLREMIARG 541


>gi|255660892|gb|ACU25615.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 481

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 136/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFXWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G++G+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVXLKEMMDKYLAPTD 290



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKQGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR  L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVXL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G            +  A  + + M       + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLISSHCKSG-----------NLDAAADVLKAMXRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGVLIENFCKXGQYDKAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L+  G
Sbjct: 362 QSTL-HLEP--SAYNPMIEYLCNNGQAAKAETLVRQLLKLG 399


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 126/258 (48%), Gaps = 30/258 (11%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L+  L +  L N     + +M +    P+++ +NV+I+A C+ G+  KA  LL +M
Sbjct: 189 ACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEM 248

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQ---TGCRKAIRR--------------------- 266
           E       PD++TY  LIS YCK GM     G +  + R                     
Sbjct: 249 ESRFIF--PDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREV 306

Query: 267 -RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             + EA  L  +M  +G  P VV YN ++   C+  +I+ A  L ++M+++   P+ VT 
Sbjct: 307 NDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTC 366

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           N+ I  Y  + ++  A+++ +KM  L  G+ P   ++  +IH  C+   V  A++FL E+
Sbjct: 367 NTLINAYCKIGDMGSAMKVKKKM--LEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEM 424

Query: 385 VDGGSVPREYTYKLVCDA 402
           +D G  P   TY  + D+
Sbjct: 425 LDAGFSPSYSTYSWLVDS 442



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 16/211 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++ L EEG + +A      M + +  PD    N +INA C++G+   A  + ++M   G
Sbjct: 334 ILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAG 393

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PD +T+  LI  +CK              +  A      ML  GF P    Y+ L+
Sbjct: 394 LK--PDQFTFKALIHGFCKL-----------HEVDSAKEFLFEMLDAGFSPSYSTYSWLV 440

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D        E  + L D++++KG   +   Y + IR    +++I+ A  +   MQ    G
Sbjct: 441 DSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQ--GKG 498

Query: 355 VPTSS-SYTPIIHALCEAGRVLEARDFLAEL 384
           +   S  YT + +A  +AG+ + A D L E+
Sbjct: 499 MKGDSVVYTSLAYAYFKAGKAIAASDMLDEM 529



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 54/215 (25%)

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           + E M + GF+  P ++  T+L++S  K          +   +W+   +++ M+  G VP
Sbjct: 174 VFEHMRVHGFK--PHLHACTVLLNSLAK--------ARLTNMVWK---VYKKMVRVGVVP 220

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS------------ 333
           ++  +N LI  CCK+  +E+A +L ++M  +   P+  TYN+ I  Y             
Sbjct: 221 NIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQ 280

Query: 334 ------------------------VVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHA 367
                                    VN++++A+ +   M  + L+ GV T   Y  I+  
Sbjct: 281 DRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPGVVT---YNSILRK 337

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           LCE G++ +A   L E+ +    P   T   + +A
Sbjct: 338 LCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINA 372



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 91/236 (38%), Gaps = 25/236 (10%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI----R 265
           +I+ L +   F  A+ LLE++ +  +   P V    + I        Q      I     
Sbjct: 106 MIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQILSWLVIFYANS 165

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           R   +A  +F  M   GF P + A   L++   K        +++  M + G +PN   +
Sbjct: 166 RMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIF 225

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           N  I       +++KA +++ +M++     P   +Y  +I   C+ G   EA      + 
Sbjct: 226 NVLIHACCKSGDVEKAEQLLNEMES-RFIFPDLFTYNTLISLYCKKGMHYEALGIQDRME 284

Query: 386 DGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPI 437
            GG  P   TY  +    C  +N  EE                  R R+VM+V+ +
Sbjct: 285 RGGVSPDIVTYNSLIYGFCREVNDLEEA----------------LRLREVMEVEGL 324


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 124/265 (46%), Gaps = 24/265 (9%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L T  + T L+  L   G+V EA+A F  M+   C PD + Y  +++ LC  G   +A
Sbjct: 137 GCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEA 196

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LLE+    GF   P++  Y  LI  YC  G              E  H  +  +F+G 
Sbjct: 197 EVLLEEAMSNGFE--PNIVVYNALIDGYCNAG--------------EMEHALK--VFEGM 238

Query: 284 -----VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
                 P+V  Y  LI G CK+ ++ERA+ LF  M + G  PN VTY + I+       +
Sbjct: 239 DGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHL 298

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
             A  ++  M+  N  VP   +++ +I ALC+  +V EA+ FL  LV  G    E  Y  
Sbjct: 299 QCAFRLLHLMET-NGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTS 357

Query: 399 VCDALNAAEEPSLLDDGLRKRIRDG 423
           + D L    +    D+ ++K I +G
Sbjct: 358 LIDGLCKTGKIDAADELMQKMISEG 382



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 103/222 (46%), Gaps = 16/222 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G +  AL  F  M   RC P+V  Y  +I+ LC+ G   +A  L  +M   G    P+V 
Sbjct: 226 GEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLE--PNVV 283

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TYT LI   C  G            +  A  L  LM   G VP+   ++ LID  CK  +
Sbjct: 284 TYTALIQGQCNEG-----------HLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREK 332

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSY 361
           +E A      + KKG   N V Y S I       +ID A E+M+KM  ++ G VP + SY
Sbjct: 333 VEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKM--ISEGFVPDAHSY 390

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + +I  LC   ++ +A   L ++++ G      TY ++ D L
Sbjct: 391 SSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 119/251 (47%), Gaps = 33/251 (13%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI  L + G V  A+  F RM +    P+V  Y  +I   C  G+   A  LL  ME 
Sbjct: 251 TELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMET 310

Query: 233 PGFRCPPDVYTYTILISSYCKYG--------MQTGCRKAIR----------------RRI 268
            G    P+ +T+++LI + CK          + +  +K ++                 +I
Sbjct: 311 NGLV--PNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKI 368

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
             A+ L + M+ +GFVPD  +Y+ LIDG C+  ++ +A  + +DM +KG   + VTY   
Sbjct: 369 DAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTII 428

Query: 329 IRYYSVVNEI--DKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           I    +V E+  +   ++  KM  +  G+ P   +YT  + + CE GR+ +A   + ++V
Sbjct: 429 ID--ELVREVGSEGPKKIFDKM--IATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMV 484

Query: 386 DGGSVPREYTY 396
           D G  P   TY
Sbjct: 485 DRGVFPNLVTY 495



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 19/241 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G++  A   F  M    C    + Y  +++ L   G   +A  +   M      C PD +
Sbjct: 121 GMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMR--ADSCAPDTH 178

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
            Y  ++   C+ G           R  EA  L    +  GF P++V YN LIDG C    
Sbjct: 179 VYATMVHGLCEAG-----------RTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGE 227

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           +E AL++F+ M+   C PN  TY   I       ++++A+ +  +M  +  G+ P   +Y
Sbjct: 228 MEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRM--VEAGLEPNVVTY 285

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLLDDGLRK 418
           T +I   C  G +  A   L  +   G VP ++T+ ++ DAL      EE  L    L K
Sbjct: 286 TALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVK 345

Query: 419 R 419
           +
Sbjct: 346 K 346



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 20/214 (9%)

Query: 154 FLKDMSRRGN--GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           FL  + ++G    E+V TS    LI  L + G ++ A     +M      PD ++Y+ +I
Sbjct: 339 FLGSLVKKGVKVNEVVYTS----LIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLI 394

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + LCR    ++A  +LE M   G +  P   TYTI+I    +     G +K         
Sbjct: 395 DGLCRQKKLSQATLMLEDMMEKGIQASP--VTYTIIIDELVREVGSEGPKK--------- 443

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +F  M+  G  PD+V Y   +   C+  R+E A  +   M  +G  PN VTYN+ IR 
Sbjct: 444 --IFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRG 501

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           Y+ +  + +A      M       P   SYT ++
Sbjct: 502 YANLGLVSQAFSTFEVMVGKGWK-PNEDSYTVLL 534



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 82/207 (39%), Gaps = 19/207 (9%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P +   N ++ AL R   F     L  +M     R      TYT LI++YC  G      
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPARNLR------TYTTLINAYCLAG------ 86

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I  A      +L  G  PD  AY   + G C+   +  A  +F  M  +GC+  
Sbjct: 87  -----DIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRT 141

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TY + +        + +A+ +   M+  +   P +  Y  ++H LCEAGR  EA   L
Sbjct: 142 AFTYTALLHGLLGAGMVREAMAVFVGMRA-DSCAPDTHVYATMVHGLCEAGRTEEAEVLL 200

Query: 382 AELVDGGSVPREYTYKLVCDAL-NAAE 407
            E +  G  P    Y  + D   NA E
Sbjct: 201 EEAMSNGFEPNIVVYNALIDGYCNAGE 227


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 119/286 (41%), Gaps = 63/286 (22%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  +T    T LI    + G  + A     RM    C PD Y Y+V+++ALC+    N+A
Sbjct: 594 GVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEA 653

Query: 224 RFLLEQMELPGFRCP---------------------------------PDVYTYTILISS 250
             +L+QM L G +C                                  P   TYT+ I+S
Sbjct: 654 LPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINS 713

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           YCK G           R+ +A  L   M  +G  PDVV YN LIDGC     I+RA    
Sbjct: 714 YCKEG-----------RLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTL 762

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVN----------------EIDKAIEMMRKMQNLNHG 354
             M    C PN  TY   +++    N                E+D   +++ +M  + HG
Sbjct: 763 KRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM--VKHG 820

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           + PT ++Y+ +I   C+AGR+ EA   L  +   G  P E  Y L+
Sbjct: 821 LNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLL 866



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 132/293 (45%), Gaps = 19/293 (6%)

Query: 134 TCKEMGIVFAR-GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF 192
           TC  + + + R G   K  W FL  M   G        S T LI+ L +   V +AL  F
Sbjct: 220 TCNALVLGYCRTGELRKACWLFLM-MPLMGCQR--NEYSYTILIQGLCDAKCVRKALVLF 276

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
             MK+  C P+V A+  +I+ LC+ G    AR L + M   G    P V TY  +I  Y 
Sbjct: 277 LMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGV--VPSVMTYNAMIVGYS 334

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           K G           R+ +A  +  LM   G  PD   YN LI G C   + E A EL ++
Sbjct: 335 KLG-----------RMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNN 382

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
             K+G  P  VT+ + I  Y +  + D A+ M  KM +    +     +  +I++L +  
Sbjct: 383 AVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQV-FGKLINSLIKKD 441

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           R+ EA++ L E+   G VP   TY  + D    + +  +  + L+   RDG +
Sbjct: 442 RLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQ 494



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 122/257 (47%), Gaps = 18/257 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G L  T +   +IK   +EG +  A   F  + +    P+ +  N ++   CR G   K
Sbjct: 177 DGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRK 236

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A +L   M L G  C  + Y+YTILI   C         K +R+ +     LF +M   G
Sbjct: 237 ACWLFLMMPLMG--CQRNEYSYTILIQGLCD-------AKCVRKALV----LFLMMKRDG 283

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+V A+  LI G CK+ R+  A  LFD M + G +P+ +TYN+ I  YS +  ++ A+
Sbjct: 284 CSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDAL 343

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           ++   M+  N   P   +Y  +I+ LC+  +  EA + L   V  G  P   T+  + + 
Sbjct: 344 KIKELMEK-NGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLING 401

Query: 403 LNAAEEPSLLDDGLRKR 419
              AE+    DD LR +
Sbjct: 402 YCMAEK---FDDALRMK 415



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 125/270 (46%), Gaps = 32/270 (11%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG + +  +   +I    + G +N+AL     M++  C PD + YN +I  LC      +
Sbjct: 317 NGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKT-EE 375

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYC---KYG---------MQTGCRKAI------ 264
           A  LL      GF   P V T+T LI+ YC   K+          M + C+  +      
Sbjct: 376 AEELLNNAVKEGF--TPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 433

Query: 265 ------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                 + R+ EA  L   +   G VP+V+ Y  +IDG CK+ +++ ALE+   M + GC
Sbjct: 434 INSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGC 493

Query: 319 IPNRVTYNSFIRYYSVVNE--IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
            PN  TYNS +  Y +V +  + KA+ ++ KMQ  +  +P   +YT ++   C+      
Sbjct: 494 QPNAWTYNSLM--YGLVKDKKLHKAMALLTKMQK-DGIIPNVITYTTLLQGQCDEHDFDN 550

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           A      +   G  P E+ Y ++ DAL  A
Sbjct: 551 AFRLFEMMEQNGLKPDEHAYAVLTDALCKA 580



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 108/253 (42%), Gaps = 12/253 (4%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           +M+  G+    TT +V   I    +EG + +A     +M++    PDV  YN++I+    
Sbjct: 694 EMTSSGHKPSATTYTV--FINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGH 751

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE------ 270
           +G  ++A   L++M   G  C P+ +TY +L+    K G     R      +W       
Sbjct: 752 MGYIDRAFSTLKRM--VGASCEPNYWTYCLLLKHLLK-GNLAYVRSVDTSGMWNLIELDI 808

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
              L   M+  G  P V  Y+ LI G CK  R+E A  L D M  KG  PN   Y   I+
Sbjct: 809 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIK 868

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                   +KA+  +  M       P   SY  ++  LC  G   + +    +L++ G  
Sbjct: 869 CCCDTKFFEKALSFVSIMSECGFQ-PQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYN 927

Query: 391 PREYTYKLVCDAL 403
             E  +K++ D L
Sbjct: 928 HDEVAWKILNDGL 940



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 52/253 (20%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A+A   +M++    P+V  Y  ++   C   +F+ A  L E ME  G +  PD + Y
Sbjct: 513 LHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLK--PDEHAY 570

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            +L  + CK G               A   +  ++ KG     V Y  LIDG  K    +
Sbjct: 571 AVLTDALCKAG--------------RAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTD 616

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIR-----------------------------YYSVV 335
            A  L + M  +GC P+  TY+  +                              Y  ++
Sbjct: 617 FAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILI 676

Query: 336 NEI------DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
           +E+      D A  M  +M +  H  P++++YT  I++ C+ GR+ +A D + ++   G 
Sbjct: 677 DEMLREGKHDHAKRMYNEMTSSGHK-PSATTYTVFINSYCKEGRLEDAEDLILKMEREGV 735

Query: 390 VPREYTYKLVCDA 402
            P   TY ++ D 
Sbjct: 736 APDVVTYNILIDG 748


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 11/235 (4%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           +TSSV  L+  L     V+ A   F    + R  PD+Y +N VI+ LCR+G   KA  + 
Sbjct: 155 STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVA 214

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           + ++  G    P V TY  LI  YCK G            ++  + L + M+  G  P  
Sbjct: 215 KDIKAWGL--APSVATYNSLIDGYCKKGGAG--------NMYHVDMLLKEMVEAGISPTA 264

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V +  LI+G CK      A+ +F++M ++G   + VTYNS I       ++++ +++M +
Sbjct: 265 VTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEE 324

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           M++L    P   ++  ++   C+ G + +A D++  + +    P    Y ++ D 
Sbjct: 325 MEDLGLS-PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDG 378



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 16/231 (6%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           C++K   ++G++ +A      M +    PDV  Y ++I+   R+G    A  + E M   
Sbjct: 339 CVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKK 398

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EANHLFRLMLFKGFVPDVVAYNC 292
           G    P+V TY  LI+ + + G             W  A+ L   M  KG   DVV YN 
Sbjct: 399 GIS--PNVTTYNCLITGFSRSG------------DWRSASGLLDEMKEKGIEADVVTYNV 444

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI   C    + +A++L D+M++ G  PN +TYN+ I+ +     I  A E+  +M+   
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                  +Y   I   C+ G++ EA D L E++D   VP   TY+ + + +
Sbjct: 505 KRA-NVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGM 554



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 14/206 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI      G + +A+A    M +    P+V  YN +I    R G++  A  LL++M+ 
Sbjct: 373 TILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKE 432

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G     DV TY +LI + C       C+  +R+ +     L   M   G  P+ + YN 
Sbjct: 433 KGIEA--DVVTYNVLIGALC-------CKGEVRKAV----KLLDEMSEVGLEPNHLTYNT 479

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +I G C    I+ A E+   M K     N VTYN FI+Y+  + ++D+A +++ +M +  
Sbjct: 480 IIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLD-K 538

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEAR 378
             VP   +Y  I   + E G   + R
Sbjct: 539 CLVPNGITYETIKEGMMEKGYTPDIR 564



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 15/171 (8%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M+++G    VTT    CLI      G    A      MK+     DV  YNV+I ALC  
Sbjct: 395 MAKKGISPNVTT--YNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCK 452

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G   KA  LL++M   G    P+  TY  +I  +C  G      + IR R+ +       
Sbjct: 453 GEVRKAVKLLDEMSEVGLE--PNHLTYNTIIQGFCDKGNIKSAYE-IRTRMEKCRKR--- 506

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
                   +VV YN  I   C+  +++ A +L ++M  K  +PN +TY + 
Sbjct: 507 -------ANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 16/230 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    ++GL+NEA      M      P V  YN +++  C +G   +A  +L  M  
Sbjct: 386 TTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVE 445

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G   PPDV +Y+ +I+ +C+            R + +A  +   M+ KG +PD V Y+ 
Sbjct: 446 RGL--PPDVVSYSTVIAGFCR-----------ERELGKAFQMKEEMVEKGVLPDTVTYSS 492

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI G C   ++  A +LF +M ++G  P+ VTY S I  Y V  E+ KA+ +  +M  + 
Sbjct: 493 LIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEM--VQ 550

Query: 353 HG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
            G +P + +Y+ +I+ L +  R   A+  L +L    SVP + TY  + +
Sbjct: 551 RGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIE 600



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 16/218 (7%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           ++A   F  M +    P+VY YNV+I  +   G+  K    + +ME  G    P+V TY 
Sbjct: 189 DDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGI--SPNVVTYN 246

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            LI + CK           ++++ EA  L R M   G   ++++YN +I+G C   R+  
Sbjct: 247 TLIDASCK-----------KKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSE 295

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPI 364
             EL ++M  KG +P+ VTYN+ +  +     + + + ++ +M  +  G+ P   +YT +
Sbjct: 296 VGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEM--VGKGLSPNVVTYTTL 353

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           I+ +C+AG +  A +   ++   G  P E TY  + D 
Sbjct: 354 INCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDG 391



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 16/241 (6%)

Query: 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           +DM R G    V T +V  +I+ +  +G + + L    +M++    P+V  YN +I+A C
Sbjct: 196 RDMVRNGVSPNVYTYNV--IIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASC 253

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
           +     +A  LL  M + G     ++ +Y  +I+  C  G           R+ E   L 
Sbjct: 254 KKKKVKEAMALLRAMAVGG--VAANLISYNSVINGLCGKG-----------RMSEVGELV 300

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             M  KG VPD V YN L++G CK   + + L L  +M  KG  PN VTY + I      
Sbjct: 301 EEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKA 360

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
             + +A+E+  +M+ +    P   +YT +I   C+ G + EA   L+E++  G  P   T
Sbjct: 361 GNLSRAVEIFDQMR-VRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVT 419

Query: 396 Y 396
           Y
Sbjct: 420 Y 420



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 126/279 (45%), Gaps = 20/279 (7%)

Query: 148 VKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           VK     L+ M+  G    L++ +SV   I  L  +G ++E       M+     PD   
Sbjct: 258 VKEAMALLRAMAVGGVAANLISYNSV---INGLCGKGRMSEVGELVEEMRGKGLVPDEVT 314

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           YN ++N  C+ GN ++   LL +M   G    P+V TYT LI+  CK G           
Sbjct: 315 YNTLVNGFCKEGNLHQGLVLLSEMVGKGL--SPNVVTYTTLINCMCKAG----------- 361

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
            +  A  +F  M  +G  P+   Y  LIDG C+   +  A ++  +M   G  P+ VTYN
Sbjct: 362 NLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYN 421

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELV 385
           + +  Y  +  + +A+ ++R M  +  G+P    SY+ +I   C    + +A     E+V
Sbjct: 422 ALVHGYCFLGRVQEAVGILRGM--VERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMV 479

Query: 386 DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           + G +P   TY  +   L   ++     D  R+ +R G+
Sbjct: 480 EKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGL 518



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 13/198 (6%)

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           +++V+ +L R+G   KA  LL      GF   P V +Y  ++ +  +       R +   
Sbjct: 135 FDLVVKSLSRLGFVPKALTLLHLANRHGF--APTVLSYNAVLDALLR-------RSSSNH 185

Query: 267 RIWE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           R ++ A  +FR M+  G  P+V  YN +I G      +E+ L     M K+G  PN VTY
Sbjct: 186 RDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTY 245

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAEL 384
           N+ I       ++ +A+ ++R M     GV  +  SY  +I+ LC  GR+ E  + + E+
Sbjct: 246 NTLIDASCKKKKVKEAMALLRAMA--VGGVAANLISYNSVINGLCGKGRMSEVGELVEEM 303

Query: 385 VDGGSVPREYTYKLVCDA 402
              G VP E TY  + + 
Sbjct: 304 RGKGLVPDEVTYNTLVNG 321



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 29/224 (12%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L  T + + LI+ L  +  + EA   F  M +    PD   Y  +INA C  G  +KA
Sbjct: 482 GVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKA 541

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L ++M   GF   PD  TY++LI+         G  K  R ++  A  L   + ++  
Sbjct: 542 LRLHDEMVQRGFL--PDNVTYSVLIN---------GLNKKARTKV--AKRLLLKLFYEES 588

Query: 284 VPDVVAYNCLIDGC---------------CKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
           VPD V YN LI+ C               C    +  A  +F  M ++   PN   YN  
Sbjct: 589 VPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLM 648

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           I  +S    + KA  +  ++++ +    T  +   ++ AL   G
Sbjct: 649 IHGHSRGGNVHKAYNLYMELEHSSFACHT-VAVIALVKALAREG 691



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           SV  L+K    +GL+NEA   F  M Q   +P+   YN++I+   R GN +KA  L  ++
Sbjct: 609 SVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMEL 668

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E   F C      +T+ + +  K   + G    + R       L + +L    + D    
Sbjct: 669 EHSSFAC------HTVAVIALVKALAREGMNDELSR-------LLQNILRSCRLNDAKVA 715

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
             L++   K   ++  L +  +M K G +P+   ++S
Sbjct: 716 KVLVEVNFKEGNMDAVLNVLTEMAKDGLLPDGGIHSS 752


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 14/223 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A    ++M + G    P+  T+T LI  +CK G     
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGL--VPNGVTFTTLIDGHCKNG----- 261

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +  +PD++ YN LI G CK   +++A +L DDM+ KG  P
Sbjct: 262 ------RVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKP 315

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +++TY + I       ++D A E  ++M   N  +     YT +I  LC+ GR ++A   
Sbjct: 316 DKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLD-DVVYTALISGLCQEGRSVDAEKM 374

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           L E++     P   TY ++ +      +       L++  RDG
Sbjct: 375 LREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDG 417



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 102/201 (50%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +   L++ Y + G        
Sbjct: 142 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSXNTLMNGYIRLG-------- 191

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L  +ML  G  PDV  Y+ LI+G CK  +++ A E FD+M  KG +PN V
Sbjct: 192 ---DLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGV 248

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A D +
Sbjct: 249 TFTTLIDGHCKNGRVDLAKEIYKQMLSQSL---LPDLITYNTLIYGLCKKGDLKQAHDLI 305

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            ++   G  P + TY  + B 
Sbjct: 306 DDMSMKGLKPDKITYTTLIBG 326



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 14/197 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A   + +M      PD+  YN +I  LC+ G+  +A  L++ M
Sbjct: 249 TFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDM 308

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G +  PD  TYT LI   CK G      +  +R I E   L           D V Y
Sbjct: 309 SMKGLK--PDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRL-----------DDVVY 355

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  R   A ++  +M      P+  TY   I  +    ++ K  +++++MQ 
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQR 415

Query: 351 LNHGVPTSSSYTPIIHA 367
             H  P+  +Y  +++ 
Sbjct: 416 DGHA-PSVVTYNVLMNG 431



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 15/153 (9%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  ++K   D + DMS +G      T   T LI    +EG ++ A     RM Q   R D
Sbjct: 294 KKGDLKQAHDLIDDMSMKGLKPDKIT--YTTLIBGCCKEGDLDSAFEHRKRMIQENIRLD 351

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              Y  +I+ LC+ G    A  +L +M     R  PD  TYT++I+ +CK G        
Sbjct: 352 DVVYTALISGLCQEGRSVDAEKMLREM--LSVRLKPDTGTYTMIINEFCKKG-------- 401

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
               +W+ + L + M   G  P VV YN L++G
Sbjct: 402 ---DVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 107/243 (44%), Gaps = 30/243 (12%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   ++  A +++   + R G  + +      +E  G +   D+Y +
Sbjct: 17  HTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASXVFAAILETKGTQ-RSDIYVF 75

Query: 245 TILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GFVPDVVA 289
           + LI++Y + G       C +  R  ++W           +L +L  FK   GF  +++ 
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEILE 135

Query: 290 ---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
                    +N L+   CK   I  A  +FD + K G  P+ V+ N+ +  Y  + ++D+
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDE 195

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
              +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G VP   T+  +
Sbjct: 196 GFRLKSVM--LASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTL 253

Query: 400 CDA 402
            D 
Sbjct: 254 IDG 256


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 121/264 (45%), Gaps = 48/264 (18%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK L  +GL+ EA      M +    P+V  +N+++N LC++G  + A  L++ M   G
Sbjct: 397 LIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           +   PD++T+ ILI  Y           + + ++  A  +  +M+  G  PDV  YN L+
Sbjct: 457 YF--PDIFTFNILIHGY-----------STQLKMENALEILDVMMDNGVDPDVYTYNSLL 503

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYN----SFIRYYSV--------------VN 336
           +G CKT + E  +E +  M +KGC PN  T+N    S  RY+ +              VN
Sbjct: 504 NGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVN 563

Query: 337 -----------------EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
                            ++D A  + RKM+ +     ++ +Y  IIHA  E   V  A  
Sbjct: 564 PDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEK 623

Query: 380 FLAELVDGGSVPREYTYKLVCDAL 403
              E+VD    P  YTY+L+ D  
Sbjct: 624 LFQEMVDRCLGPDGYTYRLMVDGF 647



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 120/259 (46%), Gaps = 16/259 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V  +  +VK     L  + +RG   L    +    I+ L ++G ++ A+    R+     
Sbjct: 225 VLCKKGDVKECEKLLDKVIKRG--VLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGP 282

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDV  YN +I  LC+   F +A   L ++   G    PD +TY  LI+ YCK GM    
Sbjct: 283 KPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLE--PDSFTYNTLIAGYCKGGM---- 336

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  +  A  +    +F GFVPD   Y  LIDG C      RAL LF++   KG  P
Sbjct: 337 -------VQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKP 389

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N + YN+ I+  S    I +A ++  +M      +P   ++  +++ LC+ G V +A   
Sbjct: 390 NVILYNTLIKGLSNQGLILEAAQLASEMSEKGL-IPEVQTFNILVNGLCKMGCVSDADGL 448

Query: 381 LAELVDGGSVPREYTYKLV 399
           +  ++  G  P  +T+ ++
Sbjct: 449 VKVMISKGYFPDIFTFNIL 467



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 139/308 (45%), Gaps = 30/308 (9%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           KA E ++ + +   F H   T + +          + + + L DM R+  G  +      
Sbjct: 22  KALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDM-RQNVGNHMLEGVYV 80

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
             +K  G +G V EA+  F RM  + C P V++YN +++ L   G F++A  +  +M   
Sbjct: 81  GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDR 140

Query: 234 GFRCPPDVYTYTILISSYCKYG------------MQTGCRK------AIRRRIWEAN--- 272
           G    PDVY++TI + S+C+                 GC         +    +E N   
Sbjct: 141 GI--TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKD 198

Query: 273 ---HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
               LF  ML  G    +  +N L+   CK   ++   +L D + K+G +PN  TYN FI
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFI 258

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +      E+D A+ M+ ++  ++ G  P   +Y  +I+ LC+  +  EA  +L +LV+ G
Sbjct: 259 QGLCQKGELDAAVRMVGRL--IDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEG 316

Query: 389 SVPREYTY 396
             P  +TY
Sbjct: 317 LEPDSFTY 324



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 24/226 (10%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L E  LVN     F         PD + Y  +I+ LC  G  N+A  L  +    G +  
Sbjct: 339 LAERILVNAVFNGFV--------PDEFTYRSLIDGLCHEGETNRALALFNEALGKGIK-- 388

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           P+V  Y  LI      G+           I EA  L   M  KG +P+V  +N L++G C
Sbjct: 389 PNVILYNTLIKGLSNQGL-----------ILEAAQLASEMSEKGLIPEVQTFNILVNGLC 437

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PT 357
           K   +  A  L   M  KG  P+  T+N  I  YS   +++ A+E++  M  +++GV P 
Sbjct: 438 KMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVM--MDNGVDPD 495

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +Y  +++ LC+  +  +  +    +V+ G  P  +T+ ++ ++L
Sbjct: 496 VYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESL 541



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 13/232 (5%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           + + T+  M +  C P+++ +N+++ +LCR    +KA  LLE+M+       PD  T+  
Sbjct: 514 DVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVN--PDAVTFGT 571

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI  +CK G   G     R+       +  + +     P    YN +I    +   +  A
Sbjct: 572 LIDGFCKNGDLDGAYTLFRK-------MEEVYMVSCSTP---TYNIIIHAFTEKLNVTMA 621

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
            +LF +M  +   P+  TY   +  +     +D   + + +M   N  +P+ ++   +I+
Sbjct: 622 EKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMME-NGFIPSLTTLGRVIN 680

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRK 418
            LC   RV EA   +  +V  G VP         D    A    +L+D L+K
Sbjct: 681 CLCVEDRVYEAAGIIHRMVQKGLVPEAVNTIFDHDKKEVAAPKLVLEDLLKK 732



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 24/181 (13%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
           F +  ++ G +   + M       +V+ S+ T   +I    E+  V  A   F  M    
Sbjct: 576 FCKNGDLDGAYTLFRKMEEV---YMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRC 632

Query: 200 CRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
             PD Y Y ++++  C+ GN +   +FLLE ME  GF   P + T   +I+  C      
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMME-NGF--IPSLTTLGRVINCLC------ 683

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                +  R++EA  +   M+ KG VP+ V  N + D   K     +   + +D+ KK C
Sbjct: 684 -----VEDRVYEAAGIIHRMVQKGLVPEAV--NTIFDHDKKEVAAPKL--VLEDLLKKSC 734

Query: 319 I 319
           I
Sbjct: 735 I 735


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 122/254 (48%), Gaps = 49/254 (19%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           ++G +  A + F  + ++  RP V +YN ++N   R+G+ N+   L   M   G +  PD
Sbjct: 154 KDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQ--PD 211

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           VYTY++LI+  CK             ++ +AN LF  ML KG +P+ V +  LIDG CK 
Sbjct: 212 VYTYSVLINGLCK-----------ESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKN 260

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFI-----------------------------RY 331
            R++ A+E++  M  +  +P+ +TYN+ I                              Y
Sbjct: 261 GRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTY 320

Query: 332 YSVVN------EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            ++++      ++D A E  ++M   N  +    +YT +I  LC+ GR ++A   L E++
Sbjct: 321 XTLIDGCCKEGDLDTAFEHRKRMIQENIRLD-DVAYTALISGLCQEGRSVDAEKMLREML 379

Query: 386 DGGSVPREYTYKLV 399
             G  P + TY ++
Sbjct: 380 SVGLKPDDRTYTMI 393



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 104/202 (51%), Gaps = 20/202 (9%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 142 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 191

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + N  FRL   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG IP
Sbjct: 192 ------DLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIP 245

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N VT+ + I  +     +D A+E+ ++M +    +P   +Y  +I+ L + G + +A D 
Sbjct: 246 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QCLLPDLITYNTLIYGLXKKGDLKQAHDL 304

Query: 381 LAELVDGGSVPREYTYKLVCDA 402
           + E+   G  P ++TY  + D 
Sbjct: 305 IDEMSMKGLKPDKFTYXTLIDG 326



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 16/198 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  L + G+  +A  L+++M
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEM 308

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
            + G +  PD +TY  LI   CK G + T      R+R+ + N   RL        D VA
Sbjct: 309 SMKGLK--PDKFTYXTLIDGCCKEGDLDTAFEH--RKRMIQEN--IRL--------DDVA 354

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQ 414

Query: 350 NLNHGVPTSSSYTPIIHA 367
              H VP+  +Y  +++ 
Sbjct: 415 RDGH-VPSVVTYNVLMNG 431



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 15/155 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +  ++K   D + +MS +G        +   LI    +EG ++ A     RM Q   R
Sbjct: 292 LXKKGDLKQAHDLIDEMSMKGLKP--DKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIR 349

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            D  AY  +I+ LC+ G    A  +L +M   G +  PD  TYT++I+ +CK G      
Sbjct: 350 LDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PDDRTYTMIINEFCKKG------ 401

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                 +W+ + L + M   G VP VV YN L++G
Sbjct: 402 -----DVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 106/243 (43%), Gaps = 30/243 (12%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   +   A +++   + R G  + +      +E  G +   D+Y  
Sbjct: 17  HTLHSYCTMIHFLCTHQMLLEAKSLIQVVVSRKGKGSASAVFATILETKGTQ-RSDIYVL 75

Query: 245 TILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GFVPDVVA 289
           + LI++Y + G       C +  R  ++W           HL +L  FK   GF  +++ 
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILE 135

Query: 290 ---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
                    +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  + ++++
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNE 195

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
              +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G +P   T+  +
Sbjct: 196 GFRLKSAM--LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTL 253

Query: 400 CDA 402
            D 
Sbjct: 254 IDG 256


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 110/237 (46%), Gaps = 18/237 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G L +T +   +IK     G + +A+  F +M +    P+V  YN +I   C+ GN N 
Sbjct: 406 HGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNN 465

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  LLE M+  G +  PD +TYT LIS + + G           ++  A  LF  M+  G
Sbjct: 466 AMRLLEIMKGNGLK--PDAWTYTELISGFSRGG-----------KLEHATSLFYGMMEHG 512

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+ V Y  +IDG     +++ AL LF  M + G +P+  TYN  I  +S  N I +A 
Sbjct: 513 ISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAE 572

Query: 343 EMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
               KM  Q L   +P   +YT  I  LC  GR   A     E+      P  YTY 
Sbjct: 573 NFCGKMVKQGL---LPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYS 626



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 163/408 (39%), Gaps = 80/408 (19%)

Query: 54  SIPRFFFQSPRSIGRQTGFRHR----TPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVT 109
           S+ RFFF     I R+  F+H       +  R+++   +  A++V +L   + R+  +V 
Sbjct: 93  SVLRFFFW----ISRRKFFKHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEV- 147

Query: 110 LGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTT 169
               + T+F   +   +DF +   +   + I   + + V    D  +DM  +     +  
Sbjct: 148 ---KRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMV----DLARDMYIKMLNSGIRP 200

Query: 170 SSVT--CLIKVLGEEGLVNEA-----------------------------------LATF 192
           S +T   +I +L ++G V EA                                    A F
Sbjct: 201 SLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMF 260

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
            RM +  C P+   Y+ +IN LC  G   +A  +LE+M   G    P VYTYTI + S C
Sbjct: 261 DRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIE--PTVYTYTIPLVSLC 318

Query: 253 KYGMQT------------GCRKAIRR------------RIWEANHLFRLMLFKGFVPDVV 288
             G  +            GC   I+             +   A  L+  ML  G VP  V
Sbjct: 319 DAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTV 378

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN LI+  C   R E A  +F  M   G +P+  TYN  I+ + ++ +I KA+ +  KM
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM 438

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
                  P   +Y  +I+  C+ G +  A   L  +   G  P  +TY
Sbjct: 439 LKAGSS-PNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTY 485



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 117/273 (42%), Gaps = 18/273 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L  M +RG    + T   T LI  L  +G    A+  +++M      P    YN +IN
Sbjct: 328 ELLGKMKKRGCVPNIQT--FTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALIN 385

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC  G F  A  + + M   G    P   TY  +I  +C  G            I +A 
Sbjct: 386 QLCVEGRFETAFTIFKWMLSHG--SLPSTQTYNEIIKCFCLMG-----------DIQKAM 432

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F  ML  G  P+V+ YN LI G CK   +  A+ L + M   G  P+  TY   I  +
Sbjct: 433 VIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF 492

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           S   +++ A  +   M  + HG+ P   +YT II       +V +A     ++V+ G++P
Sbjct: 493 SRGGKLEHATSLFYGM--MEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLP 550

Query: 392 REYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
              TY ++    +     S  ++   K ++ G+
Sbjct: 551 SSQTYNVMISGFSKTNSISEAENFCGKMVKQGL 583



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 106/255 (41%), Gaps = 18/255 (7%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           +GNG      + T LI      G +  A + FY M +    P+   Y  +I+    +   
Sbjct: 474 KGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKV 533

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           + A  L  +M   G    P   TY ++IS + K              I EA +    M+ 
Sbjct: 534 DDALALFWKMVESGNL--PSSQTYNVMISGFSK-----------TNSISEAENFCGKMVK 580

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G +P+V+ Y   IDG C+  R   A ++F +M K+   PN  TY+S I         + 
Sbjct: 581 QGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAED 640

Query: 341 AIEMMRKMQNLNH--GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK- 397
           A EM   +  L H    P   +YT ++  LC  GR  EA   +  +   G  P E  Y+ 
Sbjct: 641 A-EMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRA 699

Query: 398 -LVCDALNAAEEPSL 411
            L+ +  N   E +L
Sbjct: 700 LLIGECKNLKVESAL 714



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 27/219 (12%)

Query: 214 LCRVGNFNK---ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           L ++G F+    AR +  +M   G R  P + T+  +I+  CK G           R+ E
Sbjct: 174 LIQLGKFDMVDLARDMYIKMLNSGIR--PSLLTFNTMINILCKKG-----------RVQE 220

Query: 271 A----NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           A    +H+FR   +    P+   Y  LI G C+ + ++ A  +FD M K GC PN VTY+
Sbjct: 221 AKLIMSHIFRYDAY----PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYS 276

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           + I        +++A++M+ +M  +  G+ PT  +YT  + +LC+AG   EA + L ++ 
Sbjct: 277 TLINGLCSEGRLEEAMDMLEEM--VQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMK 334

Query: 386 DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
             G VP   T+  +   L+   +  +      K + DG+
Sbjct: 335 KRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGL 373



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 97/233 (41%), Gaps = 14/233 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F++ N++    +F   M ++G   L    + T  I  L   G    A   F+ M++    
Sbjct: 562 FSKTNSISEAENFCGKMVKQG--LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYF 619

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++Y Y+ +I  LC+ G    A        L  + C P+V TYT L+   C  G      
Sbjct: 620 PNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEG------ 673

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R +EA+ L   M  KG  P    Y  L+ G CK  ++E AL +F  M+  G   +
Sbjct: 674 -----RCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLH 728

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
              Y + I      N I++A  + + M    H      ++T ++  L + G  
Sbjct: 729 LSDYKALICALCKENFIEEAQCIFQTMLE-KHWNSDEVAWTVLLDGLLKEGET 780



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 103/249 (41%), Gaps = 12/249 (4%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G L ++ +   +I    +   ++EA     +M +    P+V  Y   I+ LCR G    
Sbjct: 546 SGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGL 605

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  +  +ME   +   P++YTY+ LI   C+ G         R    E  +L   +   G
Sbjct: 606 AFKIFHEMEKRNYF--PNLYTYSSLIYGLCQEG---------RAEDAEMYNLLARLTHYG 654

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+V  Y  L+ G C   R   A +L   M KKG  P+   Y + +       +++ A+
Sbjct: 655 CEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESAL 714

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +   M  L   +  S  Y  +I ALC+   + EA+     +++      E  + ++ D 
Sbjct: 715 NIFYSMDTLGFQLHLSD-YKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDG 773

Query: 403 LNAAEEPSL 411
           L    E  L
Sbjct: 774 LLKEGETDL 782



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 81/207 (39%), Gaps = 31/207 (14%)

Query: 171 SVTCLIKVLGEEGLVNEA--LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           + + LI  L +EG   +A       R+  + C P+V  Y  ++  LC  G   +A  L+ 
Sbjct: 624 TYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVV 683

Query: 229 QMELPGFRCPPDVYTYTILISSYCK-----------YGMQTG-------------CRKAI 264
            M+  G +  P    Y  L+   CK           Y M T              C    
Sbjct: 684 SMQKKGLQ--PSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCK 741

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              I EA  +F+ ML K +  D VA+  L+DG  K    +  L+L   M  + C  N  T
Sbjct: 742 ENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQT 801

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNL 351
           Y    R  S    +D AI++ +  Q L
Sbjct: 802 YVMLARELSA---LDCAIKIPQISQQL 825


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 128/258 (49%), Gaps = 16/258 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI  L   G   EA+  FY M   +  PD   +N +++ALC+ G   KA ++++ M  
Sbjct: 233 SSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQ 292

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              +  PDV TY  L+  +C           +R  + +  ++F  M+ KG VP V++Y  
Sbjct: 293 SDLK--PDVVTYNSLMDGHC-----------LRSEMGKTVNVFDTMVRKGCVPSVISYTT 339

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI+G CK   +++A+ LF++M+++G IP+ VTYN+ I     V  +  AI +  +M    
Sbjct: 340 LINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYG 399

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV-PREYTYKLVCDALNAAEEPSL 411
             +P   +Y  +   LC+  R+ EA   L ++++G ++ P  + Y +V D +  A E   
Sbjct: 400 Q-IPDLVTYRILFDYLCKNHRLAEAM-VLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEA 457

Query: 412 LDDGLRKRIRDGIEYRFR 429
             D   K    G+    R
Sbjct: 458 ARDLFSKLSSKGLHPDVR 475



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 138/336 (41%), Gaps = 62/336 (18%)

Query: 126 FDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV 185
           F   HN  T   +   F   N +   +  L D+ + G     +T++ T LI+ L  EG +
Sbjct: 83  FGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQP--STATFTTLIRGLCVEGKI 140

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
            EAL  F +M     +PDV  Y  +IN LC+VGN + A   L  ME     C P V  Y+
Sbjct: 141 GEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQR--NCRPTVVVYS 198

Query: 246 ILISSYCKYGMQTGCRKAIRRRI-----------------------W-EANHLFRLMLFK 281
            +I S CK    T         +                       W EA  LF  M+ +
Sbjct: 199 TIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHR 258

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
             +PD + +N L+D  CK   + +A  + D M +    P+ VTYNS +  + + +E+ K 
Sbjct: 259 KIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKT 318

Query: 342 ----------------------------IEMMRKMQNL-----NHG-VPTSSSYTPIIHA 367
                                       I++M K   L       G +P + +Y  +IH 
Sbjct: 319 VNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHG 378

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           LC  GR+ +A     E+V  G +P   TY+++ D L
Sbjct: 379 LCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYL 414



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 29/244 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL+ F RM + R  P +  ++ ++ ++ R+ +++    L +QM+   F  P + YT 
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMD--SFGIPHNTYTL 92

Query: 245 TILISSYC----------------KYGMQTGCRK--------AIRRRIWEANHLFRLMLF 280
            ILI+S+C                K G Q              +  +I EA  LF  M  
Sbjct: 93  NILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTG 152

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +GF PDV+ Y  LI+G CK      A+     M ++ C P  V Y++ I       ++ +
Sbjct: 153 EGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTE 212

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A+ +   M  L  G+ P + +Y+ +IH LC  G   EA      ++    +P + T+  +
Sbjct: 213 ALSLFSDM--LAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTL 270

Query: 400 CDAL 403
            DAL
Sbjct: 271 VDAL 274



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 16/232 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
             ++MS++G   +  T +   LI  L   G + +A+A F+ M  +   PD+  Y ++ + 
Sbjct: 356 LFEEMSQQG--LIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDY 413

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC+     +A  LL+ +E  G    PD++ Y+I++   C+ G            +  A  
Sbjct: 414 LCKNHRLAEAMVLLKVIE--GTNLDPDIHIYSIVMDGMCRAG-----------ELEAARD 460

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF  +  KG  PDV  Y  +I+G C+   +  A +LF +M++ GC PN  TYN   R + 
Sbjct: 461 LFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFL 520

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
             NE  +AI++ ++M +    +  S++ T ++  L + G     +  L E V
Sbjct: 521 RNNETLRAIQLFQEMLSRGFSIDVSTT-TLLVEMLSDDGLDQSVKQILCEFV 571



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 16/216 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + + +  F  M +  C P V +Y  +IN  C++   +KA  L E+M   G    PD  TY
Sbjct: 315 MGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGL--IPDTVTY 372

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI   C  G           R+ +A  LF  M+  G +PD+V Y  L D  CK +R+ 
Sbjct: 373 NTLIHGLCHVG-----------RLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLA 421

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A+ L   +      P+   Y+  +       E++ A ++  K+   + G+ P   +YT 
Sbjct: 422 EAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLS--SKGLHPDVRTYTI 479

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           +I+ LC+ G + EA     E+ + G  P   TY L+
Sbjct: 480 MINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLI 515


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 124/247 (50%), Gaps = 15/247 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           NE+T   +   F +   +  +  F ++   R  G L   ++    +  L + G ++ A  
Sbjct: 227 NEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSL-EAAAYPGYLDALCKAGYLDRARK 285

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
           +   ++Q    PDV  Y+++IN   R G F+ +  LLE M   G +  PDV TY+ LI+ 
Sbjct: 286 SVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVK--PDVVTYSTLINV 343

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            CK            R+  +A  L  LM   G  P+VV YN ++DG CK+ +++    ++
Sbjct: 344 LCK-----------ERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVY 392

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
           + M K  C P+ VTY+  +   S    +D A+++   +++   G P +++Y+ +I +LC 
Sbjct: 393 EMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREG-PDAAAYSMVITSLCR 451

Query: 371 AGRVLEA 377
           AG++ EA
Sbjct: 452 AGKLEEA 458



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 107/192 (55%), Gaps = 19/192 (9%)

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG-CRKAIR 265
           Y +V++ LC  G  N+A  L+   EL G      VYT T+ I +    G+ TG CR +  
Sbjct: 57  YKLVVDGLCGAGMANQALELVR--ELSG------VYTPTLFIYN----GIITGLCRAS-- 102

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            R+ +A  +   M+ +  VP+V  Y  L++G C++ + + A E+F +M + GC PN +TY
Sbjct: 103 -RVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITY 161

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAEL 384
            + I++ S   EID+A+ +M + ++L   +PT   + T I+  LC+A R+ +A  F+ E+
Sbjct: 162 GTLIQHLSRAGEIDEALRVMIEQRSLE--LPTDVITCTTIVGGLCKASRLDDALKFMEEM 219

Query: 385 VDGGSVPREYTY 396
              G  P E TY
Sbjct: 220 RQMGVRPNEVTY 231



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 15/223 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V +A     +M +    P+V+ Y +++N LCR      AR + ++M+  G  C P+  TY
Sbjct: 104 VMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNG--CKPNPITY 161

Query: 245 TILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
             LI    + G +    R  I +R  E               DV+    ++ G CK  R+
Sbjct: 162 GTLIQHLSRAGEIDEALRVMIEQRSLE------------LPTDVITCTTIVGGLCKASRL 209

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           + AL+  ++M + G  PN VTY++ +  +    E+D+ I    + +    G   +++Y  
Sbjct: 210 DDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPG 269

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            + ALC+AG +  AR  + EL   G VP   TY ++ +    A
Sbjct: 270 YLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARA 312



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 13/218 (5%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R +G +    + + LI      G  + +L     M++   +PDV  Y+ +IN LC+   F
Sbjct: 291 RQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKF 350

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
             A  LLE ME  G   PP+V TY  ++   CK G           ++ E + ++ +ML 
Sbjct: 351 QDAFRLLELMEAAG--SPPNVVTYNSVMDGLCKSG-----------KMDEVHRVYEMMLK 397

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
               PDVV Y+ +++G  K   ++ A++LF+ +      P+   Y+  I       ++++
Sbjct: 398 SRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEE 457

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           A  M   M+    G     +   ++ ALC+A R   AR
Sbjct: 458 ACGMYHGMEVTVAGDNICRALAGLVAALCDAERTDSAR 495



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 115/267 (43%), Gaps = 29/267 (10%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R N  K   +  ++M R  NG      +   LI+ L   G ++EAL      +      D
Sbjct: 135 RSNKTKLAREVFQEMKR--NGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTD 192

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V     ++  LC+    + A   +E+M   G R  P+  TY+ L+  + ++G        
Sbjct: 193 VITCTTIVGGLCKASRLDDALKFMEEMRQMGVR--PNEVTYSNLVHGFRQHG-------- 242

Query: 264 IRRRIWEANHLFRLMLF-------KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                     L R++ F       KG   +  AY   +D  CK   ++RA +  +++ + 
Sbjct: 243 ---------ELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQS 293

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           G +P+ VTY+  I  ++   + D ++E++  M+  N   P   +Y+ +I+ LC+  +  +
Sbjct: 294 GVVPDVVTYSMLINTFARAGQFDASLELLEDMRR-NGVKPDVVTYSTLINVLCKERKFQD 352

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A   L  +   GS P   TY  V D L
Sbjct: 353 AFRLLELMEAAGSPPNVVTYNSVMDGL 379



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 5/156 (3%)

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           R +  E   LF L+  +G V     Y  ++DG C      +ALEL  +++     P    
Sbjct: 32  RSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGV-YTPTLFI 90

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YN  I      + +  A +++ KM      VP   +YT +++ LC + +   AR+   E+
Sbjct: 91  YNGIITGLCRASRVMDAYKVLEKMVE-ESIVPNVFTYTILLNGLCRSNKTKLAREVFQEM 149

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
              G  P   TY  +   L+ A E   +D+ LR  I
Sbjct: 150 KRNGCKPNPITYGTLIQHLSRAGE---IDEALRVMI 182



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 13/183 (7%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L R ++  G   D  A+  L     +  +    + LF  +  +G +    TY   + 
Sbjct: 3   AKLLERSVVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVD 62

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                   ++A+E++R++  +    PT   Y  II  LC A RV++A   L ++V+   V
Sbjct: 63  GLCGAGMANQALELVRELSGVY--TPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIV 120

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKH---KELLKCG 447
           P  +TY ++ + L  + +  L  +  ++  R+G         K  PI      + L + G
Sbjct: 121 PNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGC--------KPNPITYGTLIQHLSRAG 172

Query: 448 EID 450
           EID
Sbjct: 173 EID 175


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I        ++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 101/201 (50%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWGLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M   G +PN V
Sbjct: 186 ---DLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+D  
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQDLT 299

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+   G  P + TY  + D 
Sbjct: 300 DEMSMKGLKPDKITYTTLIDG 320



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG +    + T LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANELFDEMLD-----NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L ++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK--PDKITYTTLIDGSCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GHLETAFE--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 110/231 (47%), Gaps = 15/231 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L++ L  EG V +ALA    +K     PD+  YNV I+   + GN + A     +++ 
Sbjct: 84  TTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKA 143

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  PD  +YT +I   CK G           R+ EA  LF  M  +  VP   AYN 
Sbjct: 144 QGLK--PDDVSYTSMIWVLCKAG-----------RLGEAEELFAQMEAERSVPCAYAYNT 190

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +I G     R E A +L + + ++GCIP+ V++NS +       ++D+A+ +   M+   
Sbjct: 191 MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK--K 248

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              P SS+Y  II  LC  GRV EA   L E+      P   T  ++ D L
Sbjct: 249 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRL 299



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 161/373 (43%), Gaps = 77/373 (20%)

Query: 81  RILKKEA------YNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERF--FDFFHNE 132
            ++KK+A      YNI  ++L LG               +  E Y  ++       F N 
Sbjct: 244 EVMKKDAEPNSSTYNIIIDMLCLG--------------GRVEEAYRILDEMEHASLFPNL 289

Query: 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           +T   M     +   ++  +   +  S+RG N + VT  S   LI  LG++G V+EA   
Sbjct: 290 LTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS---LIDGLGKKGQVDEAYRL 346

Query: 192 FYRM-----------------------------KQFR------CRPDVYAYNVVINALCR 216
           F +M                             K F+      C+PD+   N  ++ + +
Sbjct: 347 FEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFK 406

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
            G   K R + E +   GF   PDV +Y+ILI    K G           +  E +++F 
Sbjct: 407 AGEVEKGRMIFEDIRSYGFL--PDVRSYSILIHGLTKAG-----------QARETSNIFH 453

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M  +GF  D  AYN ++DG CK+ ++ +A E+ ++M +K   P   TY + +   + ++
Sbjct: 454 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKID 513

Query: 337 EIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
            +D+A  +  + +  + G+  +   Y+ +I    + GR+ EA   L E++  G  P  YT
Sbjct: 514 RLDEAYMLFEEAK--SKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYT 571

Query: 396 YKLVCDALNAAEE 408
           +  + DAL  AEE
Sbjct: 572 WNSLLDALVKAEE 584



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 123/267 (46%), Gaps = 19/267 (7%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M  VF  G   KG   F +D+  R  G L    S + LI  L + G   E    F+ MKQ
Sbjct: 401 MDCVFKAGEVEKGRMIF-EDI--RSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQ 457

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC-PPDVYTYTILISSYCKYGM 256
                D  AYN V++  C+ G  +KA  +LE+M+    +C  P V TY  ++    K   
Sbjct: 458 QGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE---KCVQPTVATYGAIVDGLAKID- 513

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                     R+ EA  LF     KG   +VV Y+ LIDG  K  RI+ A  + ++M KK
Sbjct: 514 ----------RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK 563

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           G  PN  T+NS +       EI++A+   + M+ +    P + +Y+ +I+ LC   +  +
Sbjct: 564 GLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCP-PNTYTYSILINGLCRVQKYNK 622

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A  F  ++   G VP   TY  +   L
Sbjct: 623 AFVFWQDMQKQGLVPNVVTYTTMISGL 649



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 16/236 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V   ++ L++M  +     V T     ++  L +   ++EA   F   K     
Sbjct: 474 FCKSGKVHKAYEILEEMKEKCVQPTVATYGA--IVDGLAKIDRLDEAYMLFEEAKSKGIE 531

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            +V  Y+ +I+   +VG  ++A  +LE+M   G    P+VYT+  L+ +  K        
Sbjct: 532 LNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL--TPNVYTWNSLLDALVK-------- 581

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I EA   F+ M      P+   Y+ LI+G C+  +  +A   + DM K+G +PN
Sbjct: 582 ---AEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPN 638

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
            VTY + I   + V  I  A  +  + +  N G+P ++S+  +I  +  A R +EA
Sbjct: 639 VVTYTTMISGLAKVGNITDAYSLFERFKA-NGGIPDAASFNALIEGMSNANRAMEA 693



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 107/247 (43%), Gaps = 17/247 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +  NV     F  ++  +  G      S T +I VL + G + EA   F +M+  R  
Sbjct: 125 FGKAGNVDMACKFFHEL--KAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSV 182

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P  YAYN +I      G F  A  LLE++   G  C P V ++  +++   K        
Sbjct: 183 PCAYAYNTMIMGYGSAGRFEDAYKLLERLRERG--CIPSVVSFNSILTCLGK-------- 232

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
              +R++ EA  LF +M  K   P+   YN +ID  C   R+E A  + D+M      PN
Sbjct: 233 ---KRKVDEALSLFEVMK-KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPN 288

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            +T N  +       ++++A ++           P   +Y  +I  L + G+V EA    
Sbjct: 289 LLTVNIMVDRLCKARKLEEAYKIFESASQRGCN-PDCVTYCSLIDGLGKKGQVDEAYRLF 347

Query: 382 AELVDGG 388
            +++D G
Sbjct: 348 EKMLDAG 354



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   +   +  L++M ++G    V T +      V  EE  +NEAL  F  MK+ +C 
Sbjct: 544 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEE--INEALVCFQSMKEMKCP 601

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+ Y Y+++IN LCRV  +NKA    + M+  G    P+V TYT +IS   K G      
Sbjct: 602 PNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGL--VPNVVTYTTMISGLAKVG------ 653

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
                 I +A  LF      G +PD  ++N LI+G     R   A +
Sbjct: 654 -----NITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQ 695


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 110/237 (46%), Gaps = 18/237 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G L +T +   +IK     G + +A+  F +M +    P+V  YN +I   C+ GN N 
Sbjct: 406 HGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNN 465

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  LLE M+  G +  PD +TYT LIS + + G           ++  A  LF  M+  G
Sbjct: 466 AMRLLEIMKGNGLK--PDAWTYTELISGFSRGG-----------KLEHATSLFYGMMEHG 512

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+ V Y  +IDG     +++ AL LF  M + G +P+  TYN  I  +S  N I +A 
Sbjct: 513 ISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAE 572

Query: 343 EMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
               KM  Q L   +P   +YT  I  LC  GR   A     E+      P  YTY 
Sbjct: 573 NFCGKMVKQGL---LPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYS 626



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 163/408 (39%), Gaps = 80/408 (19%)

Query: 54  SIPRFFFQSPRSIGRQTGFRHR----TPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVT 109
           S+ RFFF     I R+  F+H       +  R+++   +  A++V +L   + R+  +V 
Sbjct: 93  SVLRFFFW----ISRRKFFKHDMSCFVSMLNRLVRDRLFAPADHVRILMIKSCRNEGEV- 147

Query: 110 LGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTT 169
               + T+F   +   +DF +   +   + I   + + V    D  +DM  +     +  
Sbjct: 148 ---KRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMV----DLARDMYIKMLNSGIRP 200

Query: 170 SSVT--CLIKVLGEEGLVNEA-----------------------------------LATF 192
           S +T   +I +L ++G V EA                                    A F
Sbjct: 201 SLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMF 260

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
            RM +  C P+   Y+ +IN LC  G   +A  +LE+M   G    P VYTYTI + S C
Sbjct: 261 DRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIE--PTVYTYTIPLVSLC 318

Query: 253 KYGMQT------------GCRKAIRR------------RIWEANHLFRLMLFKGFVPDVV 288
             G  +            GC   I+             +   A  L+  ML  G VP  V
Sbjct: 319 DAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTV 378

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN LI+  C   R E A  +F  M   G +P+  TYN  I+ + ++ +I KA+ +  KM
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM 438

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
                  P   +Y  +I+  C+ G +  A   L  +   G  P  +TY
Sbjct: 439 LKAGSS-PNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTY 485



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 117/273 (42%), Gaps = 18/273 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L  M +RG    + T   T LI  L  +G    A+  +++M      P    YN +IN
Sbjct: 328 ELLGKMKKRGCVPNIQT--FTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALIN 385

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC  G F  A  + + M   G    P   TY  +I  +C  G            I +A 
Sbjct: 386 QLCVEGRFETAFTIFKWMLSHG--SLPSTQTYNEIIKCFCLMG-----------DIQKAM 432

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F  ML  G  P+V+ YN LI G CK   +  A+ L + M   G  P+  TY   I  +
Sbjct: 433 VIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF 492

Query: 333 SVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           S   +++ A  +   M  + HG+ P   +YT II       +V +A     ++V+ G++P
Sbjct: 493 SRGGKLEHATSLFYGM--MEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLP 550

Query: 392 REYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
              TY ++    +     S  ++   K ++ G+
Sbjct: 551 SSQTYNVMISGFSKTNSISEAENFCGKMVKQGL 583



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 106/255 (41%), Gaps = 18/255 (7%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           +GNG      + T LI      G +  A + FY M +    P+   Y  +I+    +   
Sbjct: 474 KGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKV 533

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           + A  L  +M   G    P   TY ++IS + K              I EA +    M+ 
Sbjct: 534 DDALALFWKMVESGNL--PSSQTYNVMISGFSK-----------TNSISEAENFCGKMVK 580

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G +P+V+ Y   IDG C+  R   A ++F +M K+   PN  TY+S I         + 
Sbjct: 581 QGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAED 640

Query: 341 AIEMMRKMQNLNH--GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK- 397
           A EM   +  L H    P   +YT ++  LC  GR  EA   +  +   G  P E  Y+ 
Sbjct: 641 A-EMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRA 699

Query: 398 -LVCDALNAAEEPSL 411
            L+ +  N   E +L
Sbjct: 700 LLIGECKNLKVESAL 714



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 27/219 (12%)

Query: 214 LCRVGNFNK---ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           L ++G F+    AR +  +M   G R  P + T+  +I+  CK G           R+ E
Sbjct: 174 LIQLGKFDMVDLARDMYIKMLNSGIR--PSLLTFNTMINILCKKG-----------RVQE 220

Query: 271 A----NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           A    +H+FR   +    P+   Y  LI G C+ + ++ A  +FD M K GC PN VTY+
Sbjct: 221 AKLIMSHIFRYDAY----PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYS 276

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           + I        +++A++M+ +M  +  G+ PT  +YT  + +LC+AG   EA + L ++ 
Sbjct: 277 TLINGLCSEGRLEEAMDMLEEM--VQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMK 334

Query: 386 DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
             G VP   T+  +   L+   +  +      K + DG+
Sbjct: 335 KRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGL 373



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 14/233 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F++ N++    +F   M ++G   L    + T  I  L   G    A   F+ M++    
Sbjct: 562 FSKTNSISEAENFCGKMVKQG--LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYF 619

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P++Y Y+ +I  LC+ G    A        L  + C P+V TYT L+   C  G      
Sbjct: 620 PNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEG------ 673

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R +EA+ L   M  KG  P    Y  L+ G CK  ++E AL +F  M+  G   +
Sbjct: 674 -----RCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLH 728

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
              Y + I      N I++A  + + M    H       +T ++  L + G  
Sbjct: 729 LSDYKALICALCKENFIEEAQCIFQTMLE-KHWNSDEVVWTVLLDGLLKEGET 780



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 103/249 (41%), Gaps = 12/249 (4%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G L ++ +   +I    +   ++EA     +M +    P+V  Y   I+ LCR G    
Sbjct: 546 SGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGL 605

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  +  +ME   +   P++YTY+ LI   C+ G         R    E  +L   +   G
Sbjct: 606 AFKIFHEMEKRNYF--PNLYTYSSLIYGLCQEG---------RAEDAEMYNLLARLTHYG 654

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+V  Y  L+ G C   R   A +L   M KKG  P+   Y + +       +++ A+
Sbjct: 655 CEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESAL 714

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +   M  L   +  S  Y  +I ALC+   + EA+     +++      E  + ++ D 
Sbjct: 715 NIFYSMDTLGFQLHLSD-YKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDG 773

Query: 403 LNAAEEPSL 411
           L    E  L
Sbjct: 774 LLKEGETDL 782



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 80/207 (38%), Gaps = 31/207 (14%)

Query: 171 SVTCLIKVLGEEGLVNEA--LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           + + LI  L +EG   +A       R+  + C P+V  Y  ++  LC  G   +A  L+ 
Sbjct: 624 TYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVV 683

Query: 229 QMELPGFRCPPDVYTYTILISSYCK-----------YGMQTG-------------CRKAI 264
            M+  G +  P    Y  L+   CK           Y M T              C    
Sbjct: 684 SMQKKGLQ--PSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCK 741

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              I EA  +F+ ML K +  D V +  L+DG  K    +  L+L   M  + C  N  T
Sbjct: 742 ENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQT 801

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNL 351
           Y    R  S    +D AI++ +  Q L
Sbjct: 802 YVMLARELSA---LDCAIKIPQISQQL 825


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 113/248 (45%), Gaps = 14/248 (5%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
            D L+ M+++G        + + +I     EG   +A + F+ M +   +PDV  YN++I
Sbjct: 248 LDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLII 307

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           +ALC+    +KA  +L QM   G +  PD  TY+ +I  Y   G           R+ EA
Sbjct: 308 DALCKARAMDKAELVLRQMTTDGAQ--PDTVTYSCMIHGYATLG-----------RLKEA 354

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +FR M  +G +P++V  N  +   CK  R + A E FD M  KG  P+  +Y + +  
Sbjct: 355 AKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHG 414

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           Y+        I +   M++ N        +T +IHA  + G V +A     E+   G  P
Sbjct: 415 YASEGCFADMIGLFNSMKS-NGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSP 473

Query: 392 REYTYKLV 399
              TY  V
Sbjct: 474 DVVTYSTV 481



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 126/283 (44%), Gaps = 33/283 (11%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           S + NG        T LI    + G+V++A+  F  M+Q    PDV  Y+ VI+   R+G
Sbjct: 430 SMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMG 489

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR--------KAIRR---- 266
               A     QM   G +  P+   Y+ +I  +C +G     +        K I R    
Sbjct: 490 RLTDAMEKFNQMVARGIQ--PNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIV 547

Query: 267 -------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        R+ +A+ +F L    G  P V+ +N LIDG C   ++++A ++ D M
Sbjct: 548 FFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAM 607

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
              G  P+ VTYN+ +  Y     I+  + + R+MQ    GV P + +Y  ++  L  AG
Sbjct: 608 EVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQ--RKGVKPNTVTYGIMLAGLFRAG 665

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLL 412
           R + AR    E+++ G+      Y ++   L   N A+E  +L
Sbjct: 666 RTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIIL 708



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 13/223 (5%)

Query: 175 LIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+K L       EA+    +RM +  C P+  +Y++V+ ALC      +A  LL+ M   
Sbjct: 198 LLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQ 257

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G  C PDV  Y+ +I  +   G +TG          +A  LF  M  +G  PDVV YN +
Sbjct: 258 GGACSPDVVAYSTVIHGFFNEG-ETG----------KACSLFHEMTRQGVKPDVVTYNLI 306

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ID  CK   +++A  +   M   G  P+ VTY+  I  Y+ +  + +A +M R+M+    
Sbjct: 307 IDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGL 366

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +P   +    + +LC+ GR  EA +F   +   G  P  ++Y
Sbjct: 367 -IPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSY 408



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 145/324 (44%), Gaps = 48/324 (14%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
           +A    +K      ++M +RG    +  + VTC   +  L + G   EA   F  M    
Sbjct: 345 YATLGRLKEAAKMFREMKKRG----LIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKG 400

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
            +PD+++Y  +++     G F     L   M+  G     + + +TILI +Y K GM   
Sbjct: 401 HKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGI--AANCHVFTILIHAYAKRGM--- 455

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   + +A  +F  M  +G  PDVV Y+ +I    +  R+  A+E F+ M  +G  
Sbjct: 456 --------VDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQ 507

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS--YTPIIHALCEAGRVLEA 377
           PN   Y+S I+ + +   + KA E++ +M  +N G+P      ++ +I++LC+ GRV++A
Sbjct: 508 PNTAVYSSIIQGFCMHGGLVKAKELVSEM--INKGIPRPDIVFFSSVINSLCKDGRVMDA 565

Query: 378 RDFLAELVDGGSVPREYTYKLVCDA-------------LNAAE----EPSL-----LDDG 415
            D      D G  P   T+  + D              L+A E    EP +     L DG
Sbjct: 566 HDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDG 625

Query: 416 LRK--RIRDGIE-YRFRQVMKVKP 436
             K  RI DG+  +R  Q   VKP
Sbjct: 626 YFKNGRINDGLTLFREMQRKGVKP 649



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 128/296 (43%), Gaps = 35/296 (11%)

Query: 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG--N 163
           Q V  G+   T  Y  + + F        C   G+V A+        + + +M  +G   
Sbjct: 500 QMVARGIQPNTAVYSSIIQGF--------CMHGGLVKAK--------ELVSEMINKGIPR 543

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
            ++V  SSV   I  L ++G V +A   F        RP V  +N +I+  C VG  +KA
Sbjct: 544 PDIVFFSSV---INSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKA 600

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             +L+ ME+ G    PD+ TY  L+  Y K G           RI +   LFR M  KG 
Sbjct: 601 FKILDAMEVVGVE--PDIVTYNTLLDGYFKNG-----------RINDGLTLFREMQRKGV 647

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+ V Y  ++ G  +  R   A + F +M + G       Y   +      N  D+AI 
Sbjct: 648 KPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAII 707

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           + +K+  +N     +   T +I+A+ +  R  EA++  A +   G +P E TY ++
Sbjct: 708 LFQKLGTMNVKFSITILNT-MINAMYKVQRKEEAKELFATISASGLLPNESTYGVM 762



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 7/184 (3%)

Query: 246 ILISSYCKYG--MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           + + ++C Y   M   CR    RR      LF  +L  G   D +  N L+   C   R 
Sbjct: 152 VAVPTFCTYNILMDCCCRA---RRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRT 208

Query: 304 ERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           E A+  L   M++ GC+PN V+Y+  ++     +   +A+++++ M        P   +Y
Sbjct: 209 EEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAY 268

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
           + +IH     G   +A     E+   G  P   TY L+ DAL  A      +  LR+   
Sbjct: 269 STVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTT 328

Query: 422 DGIE 425
           DG +
Sbjct: 329 DGAQ 332


>gi|222641973|gb|EEE70105.1| hypothetical protein OsJ_30115 [Oryza sativa Japonica Group]
          Length = 522

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 17/257 (6%)

Query: 154 FLKDMSRR-GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
            L+D+S R    E +  +S   LI+     G +  +++ F+R++     P+   Y ++  
Sbjct: 118 LLRDVSTRLPLPEPLVLASHNLLIEAATRSGHLAVSISLFHRLRSLHVSPNAETYRILTQ 177

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           +LCR G  + A  LL++M   G   P D   YT ++++ C+           ++++ EA 
Sbjct: 178 SLCRRGQVHTAATLLDEMLHRGI--PADPLAYTTVLNALCR-----------KKQLREAY 224

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L  LM  +G  PD+V YN +I G C+  R   A ++F DM + GC PN VTY + +   
Sbjct: 225 RLLCLMRGRGVSPDIVHYNTVIVGVCREGRPLDACKVFGDMRESGCAPNAVTYTAVVNGL 284

Query: 333 SVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
            V    DKA   +  M  L  G +P  S    +I   C  G+V EA   +  ++D G VP
Sbjct: 285 CVNGLYDKAEAYLDDM--LGKGLLPHFSVLHSVIKGCCAVGKVNEAAGMMTRMLDLGMVP 342

Query: 392 REYTYKLVCDALNAAEE 408
              T+  V  ++ + E+
Sbjct: 343 HAETWSSVIRSVCSDED 359


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 119/286 (41%), Gaps = 63/286 (22%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  +T    T LI    + G  + A     RM    C PD Y Y+V+++ALC+    N+A
Sbjct: 594 GVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEA 653

Query: 224 RFLLEQMELPGFRCP---------------------------------PDVYTYTILISS 250
             +L+QM L G +C                                  P   TYT+ I+S
Sbjct: 654 LPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINS 713

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           YCK G           R+ +A  L   M  +G  PDVV YN LIDGC     I+RA    
Sbjct: 714 YCKEG-----------RLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTL 762

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVN----------------EIDKAIEMMRKMQNLNHG 354
             M    C PN  TY   +++    N                E+D   +++ +M  + HG
Sbjct: 763 KRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM--VKHG 820

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           + PT ++Y+ +I   C+AGR+ EA   L  +   G  P E  Y L+
Sbjct: 821 LNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLL 866



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 132/293 (45%), Gaps = 19/293 (6%)

Query: 134 TCKEMGIVFAR-GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF 192
           TC  + + + R G   K  W FL  M   G        S T LI+ L E   V EAL  F
Sbjct: 220 TCNALVLGYCRTGELRKACWLFLM-MPLMGCQR--NEYSYTILIQGLCEAKCVREALVLF 276

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
             MK+  C P+V A+  +I+ LC+ G    AR L + M   G    P V TY  +I  Y 
Sbjct: 277 LMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGV--VPSVMTYNAMIVGYS 334

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           K G           R+ +A  +  LM   G  PD   YN LI G C   + E A EL ++
Sbjct: 335 KLG-----------RMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNN 382

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
             K+G  P  VT+ + I  Y +  + D A+ M  KM +    +     +  +I++L +  
Sbjct: 383 AVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQV-FGKLINSLIKKD 441

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           R+ EA++ L E+   G VP   TY  + D    + +  +  + L+   RDG +
Sbjct: 442 RLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQ 494



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 123/257 (47%), Gaps = 18/257 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G L  T +   +IK   +EG +  A   F  + +    P+ +  N ++   CR G   K
Sbjct: 177 DGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRK 236

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A +L   M L G  C  + Y+YTILI   C+        K +R    EA  LF +M   G
Sbjct: 237 ACWLFLMMPLMG--CQRNEYSYTILIQGLCE-------AKCVR----EALVLFLMMKRDG 283

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+V A+  LI G CK+ R+  A  LFD M + G +P+ +TYN+ I  YS +  ++ A+
Sbjct: 284 CSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDAL 343

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           ++   M+  N   P   +Y  +I+ LC+  +  EA + L   V  G  P   T+  + + 
Sbjct: 344 KIKELMEK-NGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLING 401

Query: 403 LNAAEEPSLLDDGLRKR 419
              AE+    DD LR +
Sbjct: 402 YCMAEK---FDDALRMK 415



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 125/270 (46%), Gaps = 32/270 (11%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG + +  +   +I    + G +N+AL     M++  C PD + YN +I  LC      +
Sbjct: 317 NGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKT-EE 375

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYC---KYG---------MQTGCRKAI------ 264
           A  LL      GF   P V T+T LI+ YC   K+          M + C+  +      
Sbjct: 376 AEELLNNAVKEGF--TPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 433

Query: 265 ------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                 + R+ EA  L   +   G VP+V+ Y  +IDG CK+ +++ ALE+   M + GC
Sbjct: 434 INSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGC 493

Query: 319 IPNRVTYNSFIRYYSVVNE--IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
            PN  TYNS +  Y +V +  + KA+ ++ KMQ  +  +P   +YT ++   C+      
Sbjct: 494 QPNAWTYNSLM--YGLVKDKKLHKAMALLTKMQK-DGIIPNVITYTTLLQGQCDEHDFDN 550

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           A      +   G  P E+ Y ++ DAL  A
Sbjct: 551 AFRLFEMMEQNGLKPDEHAYAVLTDALCKA 580



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 108/253 (42%), Gaps = 12/253 (4%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           +M+  G+    TT +V   I    +EG + +A     +M++    PDV  YN++I+    
Sbjct: 694 EMTSSGHKPSATTYTV--FINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGH 751

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE------ 270
           +G  ++A   L++M   G  C P+ +TY +L+    K G     R      +W       
Sbjct: 752 MGYIDRAFSTLKRM--VGASCEPNYWTYCLLLKHLLK-GNLAYVRSVDTSGMWNLIELDI 808

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
              L   M+  G  P V  Y+ LI G CK  R+E A  L D M  KG  PN   Y   I+
Sbjct: 809 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIK 868

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                   +KA+  +  M       P   SY  ++  LC  G   + +    +L++ G  
Sbjct: 869 CCCDTKFFEKALSFVSIMSECGFQ-PQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYN 927

Query: 391 PREYTYKLVCDAL 403
             E  +K++ D L
Sbjct: 928 HDEVAWKILNDGL 940



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 52/253 (20%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A+A   +M++    P+V  Y  ++   C   +F+ A  L E ME  G +  PD + Y
Sbjct: 513 LHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLK--PDEHAY 570

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            +L  + CK G               A   +  ++ KG     V Y  LIDG  K    +
Sbjct: 571 AVLTDALCKAG--------------RAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTD 616

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIR-----------------------------YYSVV 335
            A  L + M  +GC P+  TY+  +                              Y  ++
Sbjct: 617 FAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILI 676

Query: 336 NEI------DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
           +E+      D A  M  +M +  H  P++++YT  I++ C+ GR+ +A D + ++   G 
Sbjct: 677 DEMLREGKHDHAKRMYNEMTSSGHK-PSATTYTVFINSYCKEGRLEDAEDLILKMEREGV 735

Query: 390 VPREYTYKLVCDA 402
            P   TY ++ D 
Sbjct: 736 APDVVTYNILIDG 748


>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 22/292 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A  F+ W +    F H+ M+   +  +         LWDFL +M    + E+   S +  
Sbjct: 94  AHRFFLWAKSIPGFQHSVMSFHILVEILGSCKQFAILWDFLTEMRESHHYEI--NSEIFW 151

Query: 175 LI-KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           LI +   +  L + A+ +F RM +F  +P ++  + ++  LC+  +  +A+ L  Q +  
Sbjct: 152 LIFRAYSQANLPDGAIRSFNRMDEFGVKPTIHDLDKLLFILCKRKHVKQAQQLFHQAK-- 209

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
             R      TY+ILIS + + G              +A  LF+ ML +G   D++AYN L
Sbjct: 210 -NRFSLTAKTYSILISGWGEIGDSE-----------KACDLFQAMLEQGCPVDLLAYNNL 257

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           +   CK  R++ A  +F DM  K   P+  TY+ FI  Y   +++  A  ++ KM+  N 
Sbjct: 258 LQALCKGGRVDEAKNIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSAFRVLDKMRRYN- 316

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CD 401
            +P   +Y  II  LC+   V EA   L E++  G  P  ++Y  +    CD
Sbjct: 317 LLPNVFTYNCIIKQLCKNEHVEEAYQLLDEMISRGVKPDTWSYNAIQAYHCD 368



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 112/234 (47%), Gaps = 16/234 (6%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           +T  + + LI   GE G   +A   F  M +  C  D+ AYN ++ ALC+ G  ++A+ +
Sbjct: 214 LTAKTYSILISGWGEIGDSEKACDLFQAMLEQGCPVDLLAYNNLLQALCKGGRVDEAKNI 273

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
              M     R  PD +TY+I I SYC    +Q+  R   + R +              +P
Sbjct: 274 FHDM--LSKRVEPDAFTYSIFIHSYCDADDVQSAFRVLDKMRRY------------NLLP 319

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           +V  YNC+I   CK   +E A +L D+M  +G  P+  +YN+   Y+    E+++A+ +M
Sbjct: 320 NVFTYNCIIKQLCKNEHVEEAYQLLDEMISRGVKPDTWSYNAIQAYHCDHCEVNRALRLM 379

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +M+  +  +P   +Y  ++  L   GR  +  +    +VD    P   TY ++
Sbjct: 380 FRMEK-DICLPDRHTYNMVLKLLIRIGRFDKVTEVWENMVDKKFYPSVSTYSVM 432



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 33/236 (13%)

Query: 208 NVVINALCRVGN--FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK------------ 253
           N+V   L R  N  F+  RF L    +PGF+     +   + I   CK            
Sbjct: 78  NLVEQVLKRCKNLGFSAHRFFLWAKSIPGFQHSVMSFHILVEILGSCKQFAILWDFLTEM 137

Query: 254 -----YGMQTGCRKAIRRRIWEAN------HLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
                Y + +     I R   +AN        F  M   G  P +   + L+   CK   
Sbjct: 138 RESHHYEINSEIFWLIFRAYSQANLPDGAIRSFNRMDEFGVKPTIHDLDKLLFILCKRKH 197

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSY 361
           +++A +LF     +  +  + TY+  I  +  + + +KA ++ + M  L  G P    +Y
Sbjct: 198 VKQAQQLFHQAKNRFSLTAK-TYSILISGWGEIGDSEKACDLFQAM--LEQGCPVDLLAY 254

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLD 413
             ++ ALC+ GRV EA++   +++     P  +TY +     CDA +      +LD
Sbjct: 255 NNLLQALCKGGRVDEAKNIFHDMLSKRVEPDAFTYSIFIHSYCDADDVQSAFRVLD 310


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 132/270 (48%), Gaps = 26/270 (9%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            +++M+ +G    V T ++  LI  L   GLV  A+    ++ ++ C P+  +YN +++A
Sbjct: 73  LMEEMAHKGCPPNVVTFNM--LISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHA 130

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+    +KA   +E M   G  C PD+ +Y  L+++ C+ G            +  A  
Sbjct: 131 FCKQKKMDKAMAFVELMVSRG--CYPDIVSYNTLLTALCRNG-----------EVDVAID 177

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L   +  KG  P +++YN +IDG  K  + + ALEL D+M  KG  P+ +TY +      
Sbjct: 178 LLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLC 237

Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
             ++I++AI    K+Q++  G+ PT   Y  I+  LC+      A D  + ++  G +P 
Sbjct: 238 REDKIEEAIRTFCKVQDM--GIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPN 295

Query: 393 EYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
           E TY ++ + L          +GL K  RD
Sbjct: 296 ESTYTILVEGLAY--------EGLVKEARD 317



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 114/237 (48%), Gaps = 22/237 (9%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
            M+   C PD+  YNVV+N +C+ G  + A   LE   LP +   P+  +Y I++     
Sbjct: 6   EMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLEN--LPSYGGEPNTVSYNIVLK---- 59

Query: 254 YGMQTGCRKAIRRRIWE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
            G+ T  R       WE A  L   M  KG  P+VV +N LI   C+   +E A+E+ + 
Sbjct: 60  -GLFTAER-------WEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQ 111

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEA 371
           + K GC PN ++YN  +  +    ++DKA+  +  M  ++ G  P   SY  ++ ALC  
Sbjct: 112 IPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELM--VSRGCYPDIVSYNTLLTALCRN 169

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA----EEPSLLDDGLRKRIRDGI 424
           G V  A D L +L   G  P   +Y  V D L  A    E   LLD+ + K ++  I
Sbjct: 170 GEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDI 226



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 122/250 (48%), Gaps = 16/250 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L +M  +G    + T +V  ++  + +EG V++A+     +  +   P+  +YN+V+  
Sbjct: 3   LLDEMRDKGCAPDIITYNV--VLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKG 60

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           L     +  A  L+E+M   G  CPP+V T+ +LIS  C+ G+           +  A  
Sbjct: 61  LFTAERWEDAEKLMEEMAHKG--CPPNVVTFNMLISFLCRRGL-----------VEPAME 107

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +   +   G  P+ ++YN L+   CK  ++++A+   + M  +GC P+ V+YN+ +    
Sbjct: 108 VLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALC 167

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
              E+D AI+++ +++      P   SY  +I  L +AG+  EA + L E++  G  P  
Sbjct: 168 RNGEVDVAIDLLHQLKGKGCS-PVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDI 226

Query: 394 YTYKLVCDAL 403
            TY  +   L
Sbjct: 227 ITYTTIASGL 236



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 94/227 (41%), Gaps = 49/227 (21%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L+  L   G V+ A+   +++K   C P + +YN VI+ L + G   +A  LL++M
Sbjct: 158 SYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEM 217

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +  PD+ TYT + S  C+             +I EA   F  +   G  P VV Y
Sbjct: 218 ISKGLQ--PDIITYTTIASGLCR-----------EDKIEEAIRTFCKVQDMGIRPTVVLY 264

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N ++ G CK      A++LF  M   GC+PN                             
Sbjct: 265 NAILLGLCKRRETHNAIDLFSYMISNGCMPNE---------------------------- 296

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
                   S+YT ++  L   G V EARD L +L   G V +++  K
Sbjct: 297 --------STYTILVEGLAYEGLVKEARDLLGQLCSRGVVNKKFMKK 335



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366
           ++L D+M  KGC P+ +TYN  +        +D A+E +  + +   G P + SY  ++ 
Sbjct: 1   MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYG-GEPNTVSYNIVLK 59

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            L  A R  +A   + E+   G  P   T+ ++
Sbjct: 60  GLFTAERWEDAEKLMEEMAHKGCPPNVVTFNML 92


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 101/203 (49%), Gaps = 16/203 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  YNVV++ LC++GN  +A  LL++M   G    PD  TYT +I ++ + G      
Sbjct: 512 PDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG--VIPDYVTYTSIIHAHLENG------ 563

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ +   +F  ML KG  P VV Y  LI G     R+ERA   F +M +KG +PN
Sbjct: 564 -----RLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPN 618

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            +TYNS I     V  +D+A     +M  +  G+ P   SYT +I+  C  G   EA   
Sbjct: 619 VITYNSLINGLCKVRRMDQAYNFFAEM--VEKGIFPNKYSYTILINENCNMGNWQEALSL 676

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
             +++D G  P   T+  +   L
Sbjct: 677 YKQMLDRGVQPDSCTHSALLKQL 699



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 113/246 (45%), Gaps = 29/246 (11%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + +A   F  ++     P +  YN +++ LCR G    A+ L  +M   G    PD+ 
Sbjct: 388 GNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI--APDIV 445

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHL---------------------FRL---M 278
           TYTIL++  CK G  +  ++     + E   L                     F L   M
Sbjct: 446 TYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEM 505

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           L KGF PD++ YN ++DG CK   +E A EL   M   G IP+ VTY S I  +     +
Sbjct: 506 LAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRL 565

Query: 339 DKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
            K  E+  +M  L+ G+ P+  +YT +IH     GR+  A  + +E+ + G +P   TY 
Sbjct: 566 RKGREIFYEM--LSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYN 623

Query: 398 LVCDAL 403
            + + L
Sbjct: 624 SLINGL 629



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 14/243 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G V + L     M++  C P+   YNV+IN L + G F +A+ L+ +M   G +     Y
Sbjct: 248 GKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKV--SAY 305

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY  LI  Y   GM           + EA  L   M+ KG  P V  YN  I G CK  R
Sbjct: 306 TYNPLIYGYFNKGM-----------LAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGR 354

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +  A++   DM     +P+ V+YN+ I  Y  +  + KA  +  +++++ +  PT  +Y 
Sbjct: 355 MSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSI-YLFPTIVTYN 413

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            ++  LC  G +  A+    E+++ G  P   TY ++ +        S+  +   + + +
Sbjct: 414 TLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHE 473

Query: 423 GIE 425
           G+E
Sbjct: 474 GLE 476



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 113/271 (41%), Gaps = 49/271 (18%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G   T ++    I  L + G +++A+     M      PDV +YN +I   CR+GN  KA
Sbjct: 334 GASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKA 393

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L +  EL      P + TY  L+   C+ G            +  A  L   M+ +G 
Sbjct: 394 FLLFD--ELRSIYLFPTIVTYNTLLDGLCRQG-----------ELEVAQQLKVEMINEGI 440

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNK---------------------------- 315
            PD+V Y  L++G CK   +  A E FD+M                              
Sbjct: 441 APDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFS 500

Query: 316 -------KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
                  KG  P+ + YN  +     +  +++A E+++KM + +  +P   +YT IIHA 
Sbjct: 501 LQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVS-DGVIPDYVTYTSIIHAH 559

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            E GR+ + R+   E++  G  P   TY ++
Sbjct: 560 LENGRLRKGREIFYEMLSKGLTPSVVTYTVL 590



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 14/230 (6%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           V+   +  LI V  ++ +V + L+ F +M + R  PDV   N ++  L      +KA  +
Sbjct: 162 VSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEV 221

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
              M   G +  P + TY  L+ SYCK G           ++ +   L   M  +G  P+
Sbjct: 222 YRTMGEFGIK--PTIVTYNTLLDSYCKGG-----------KVQQGLDLLSEMQRRGCAPN 268

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
            V YN LI+G  K    E+A  L  +M K G   +  TYN  I  Y     + +A+ +  
Sbjct: 269 DVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQE 328

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +M  L    PT ++Y   I+ LC+ GR+ +A   L++++    +P   +Y
Sbjct: 329 EMV-LKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSY 377



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 17/205 (8%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G + EA     +M      PD   Y  +I+A    G   K R +  +M   G    P V 
Sbjct: 528 GNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGL--TPSVV 585

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TYT+LI  +   G           R+  A   F  M  KG +P+V+ YN LI+G CK  R
Sbjct: 586 TYTVLIHGHAGKG-----------RLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRR 634

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           +++A   F +M +KG  PN+ +Y   I     +    +A+ + ++M  L+ GV P S ++
Sbjct: 635 MDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQM--LDRGVQPDSCTH 692

Query: 362 TPIIHALCEAGRVLEARDFLAELVD 386
           + ++  L +  ++   R  L  L+D
Sbjct: 693 SALLKQLGKDCKLQAVRQ-LESLLD 716



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 13/158 (8%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I    E G + +    FY M      P V  Y V+I+     G   +A     +M+ 
Sbjct: 553 TSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQE 612

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P+V TY  LI+  CK            RR+ +A + F  M+ KG  P+  +Y  
Sbjct: 613 KGIL--PNVITYNSLINGLCKV-----------RRMDQAYNFFAEMVEKGIFPNKYSYTI 659

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           LI+  C     + AL L+  M  +G  P+  T+++ ++
Sbjct: 660 LINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLK 697



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 21/152 (13%)

Query: 167 VTTSSVTCLIKVLGE--EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA- 223
           +T S VT  + + G   +G +  A   F  M++    P+V  YN +IN LC+V   ++A 
Sbjct: 580 LTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAY 639

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EANHLFRLMLFKG 282
            F  E +E   F   P+ Y+YTILI+  C  G             W EA  L++ ML +G
Sbjct: 640 NFFAEMVEKGIF---PNKYSYTILINENCNMGN------------WQEALSLYKQMLDRG 684

Query: 283 FVPDVVAYNCLIDGCCKTYRIE--RALELFDD 312
             PD   ++ L+    K  +++  R LE   D
Sbjct: 685 VQPDSCTHSALLKQLGKDCKLQAVRQLESLLD 716



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 7/150 (4%)

Query: 264 IRRRIWEAN-HLFRLMLFKGFVPDVVA---YNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           +  R+  AN H    +L  G V   V+    + LI    K   +E+ L +FD M K    
Sbjct: 137 VMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLS 196

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+    N  +R     + + KA+E+ R M     G+ PT  +Y  ++ + C+ G+V +  
Sbjct: 197 PDVKNCNRILRILRDKDLMSKAVEVYRTMGEF--GIKPTIVTYNTLLDSYCKGGKVQQGL 254

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           D L+E+   G  P + TY ++ + L+   E
Sbjct: 255 DLLSEMQRRGCAPNDVTYNVLINGLSKKGE 284


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 121/262 (46%), Gaps = 31/262 (11%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G  +   +   ++  + + G    AL    +M++   +PDV  Y+ +I+ LC+ G+ +
Sbjct: 38  GKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHS 97

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------------- 266
            A++L  +M   G    P+V+TY  +I  +C +G  +  ++ +R                
Sbjct: 98  DAQYLFSEMLEKGI--APNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNA 155

Query: 267 ---------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    +++EA  L   ML +   PD V YN +I G CK  R + A  +FD M    
Sbjct: 156 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-- 213

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P+ VT+N+ I  Y     +D+ ++++R++      V  +++Y  +IH  CE   +  A
Sbjct: 214 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL-VANTTTYNTLIHGFCEVDNLNAA 270

Query: 378 RDFLAELVDGGSVPREYTYKLV 399
           +D   E++  G  P   T  ++
Sbjct: 271 QDLFQEMISHGVCPDTITCNIL 292



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 112/275 (40%), Gaps = 59/275 (21%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  EG V EA A   +M       DV  Y  ++N +C++G+   A  LL +ME   
Sbjct: 16  LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 75

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PDV  Y+ +I   CK G  +           +A +LF  ML KG  P+V  YNC+I
Sbjct: 76  IK--PDVVIYSAIIDRLCKDGHHS-----------DAQYLFSEMLEKGIAPNVFTYNCMI 122

Query: 295 DGCCKTYR-----------IER------------------------ALELFDDMNKKGCI 319
           DG C   R           IER                        A +L D+M  +   
Sbjct: 123 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 182

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ VTYNS I  +   N  D A  M   M +     P   ++  II   C A RV E   
Sbjct: 183 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-----PDVVTFNTIIDVYCRAKRVDEGMQ 237

Query: 380 FLAELVDGGSVPREYTYKLV------CDALNAAEE 408
            L E+   G V    TY  +       D LNAA++
Sbjct: 238 LLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 272



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 115/234 (49%), Gaps = 33/234 (14%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +I  L ++G  ++A   F  M +    P+V+ YN +I+  C  G ++ A+ LL  M  
Sbjct: 84  SAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM-- 141

Query: 233 PGFRCPPDVYTYTILISSYCKYG----MQTGCRKAIRRRIW------------------- 269
                 PDV T+  LIS+  K G     +  C + + R I+                   
Sbjct: 142 IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRF 201

Query: 270 -EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +A H+F LM      PDVV +N +ID  C+  R++  ++L  +++++G + N  TYN+ 
Sbjct: 202 DDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 257

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           I  +  V+ ++ A ++ ++M  ++HGV P + +   +++  CE  ++ EA +  
Sbjct: 258 IHGFCEVDNLNAAQDLFQEM--ISHGVCPDTITCNILLYGFCENEKLEEALELF 309



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 14/219 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+E +     + +     +   YN +I+  C V N N A+ L ++M   G    PD  T 
Sbjct: 232 VDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV--CPDTITC 289

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            IL+  +C+             ++ EA  LF ++       D VAYN +I G CK  +++
Sbjct: 290 NILLYGFCE-----------NEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVD 338

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A +LF  +   G  P+  TYN  I  +   + I  A  +  KM++  H  P +S+Y  +
Sbjct: 339 EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHE-PDNSTYNTL 397

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           I    +AG + ++ + ++E+   G     +T K+V D +
Sbjct: 398 IRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLI 436



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 99/234 (42%), Gaps = 17/234 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V+ R   V      L+++SRRG   +  T++   LI    E   +N A   F  M     
Sbjct: 225 VYCRAKRVDEGMQLLREISRRG--LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 282

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD    N+++   C      +A  L E +++   +   D   Y I+I   CK       
Sbjct: 283 CPDTITCNILLYGFCENEKLEEALELFEVIQMS--KIDLDTVAYNIIIHGMCK------- 333

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA  LF  +   G  PDV  YN +I G C    I  A  LF  M   G  P
Sbjct: 334 ----GSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEP 389

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
           +  TYN+ IR      EIDK+IE++ +M+  ++G    +    ++  L   GR+
Sbjct: 390 DNSTYNTLIRGCLKAGEIDKSIELISEMR--SNGFSGDAFTIKMVADLITDGRL 441



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 5/148 (3%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M+  G  P V+ +N LI+G C   R+  A  L + M  KG   + VTY + +     + +
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
              A+ ++ KM+   H  P    Y+ II  LC+ G   +A+   +E+++ G  P  +TY 
Sbjct: 61  TKSALNLLSKMEE-THIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYN 119

Query: 398 LVCDALNA----AEEPSLLDDGLRKRIR 421
            + D   +    ++   LL D + + I 
Sbjct: 120 CMIDGFCSFGRWSDAQRLLRDMIEREIN 147


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 14/199 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PD Y Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 209 QPDXYTYSVLINGLCKESKMDDANELFDEMLVKGL--VPNGVTFTTLIDGHCKKG----- 261

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +  +PD++ YN LI G CK   +++A +L D+M  KG  P
Sbjct: 262 ------RVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKP 315

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +++TY + I       ++D A E  ++M   N  +    +YT +I  LC+ GR ++A   
Sbjct: 316 DKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD-DVAYTALISGLCQEGRSVDAEKM 374

Query: 381 LAELVDGGSVPREYTYKLV 399
           L E++  G  P   TY ++
Sbjct: 375 LREMLSVGLKPDTGTYTMI 393



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 142 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 191

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PD   Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 192 ------DLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVP 245

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A 
Sbjct: 246 NGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSL---LPDLITYNTLIYGLCKKGDLKQAN 302

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+V  G  P + TY  + D 
Sbjct: 303 DLIDEMVMKGLKPDKITYTTLIDG 326



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 14/197 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    ++G V+ A+  + RM      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 249 TFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEM 308

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G +  PD  TYT LI   CK G      +  +R I E   L           D VAY
Sbjct: 309 VMKGLK--PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL-----------DDVAY 355

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K   ++++MQ 
Sbjct: 356 TALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQR 415

Query: 351 LNHGVPTSSSYTPIIHA 367
             H VP+  +Y  +++ 
Sbjct: 416 NGH-VPSVVTYNVLMNG 431



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 30/243 (12%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   ++  A +++   + R G  + +      +E  G +   D+Y +
Sbjct: 17  HTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQ-RSDIYVF 75

Query: 245 TILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GFVPDVVA 289
           + LI++Y + G       C +  R  ++W           HL +L  FK   GF  +++ 
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILE 135

Query: 290 ---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
                    +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  + ++D+
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
              +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G VP   T+  +
Sbjct: 196 GFRLKSAM--LASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTL 253

Query: 400 CDA 402
            D 
Sbjct: 254 IDG 256


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 115/267 (43%), Gaps = 16/267 (5%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           S  G G   +  + T LI V  +      A      M   +C P VY+Y  +IN LC+  
Sbjct: 126 SMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNR 185

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
             ++A  L E+M+L G  C PD  TY  LI   C           +++R+ EA  L  +M
Sbjct: 186 KVDQAYQLFEEMKLAG--CKPDRVTYNTLIHGLC-----------VKQRLHEAKDLLTVM 232

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           +  GF PD + +  LI+G C T RI+ A  LF  M K+GC P+ VT+   +    ++ ++
Sbjct: 233 VENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKL 292

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
             A+ ++R        V     YTPI   L        A   L ++   G  P   TY  
Sbjct: 293 RPALSVVRNYPACPEAVIL---YTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTA 349

Query: 399 VCDALNAAEEPSLLDDGLRKRIRDGIE 425
               L   +E        R+ +  GIE
Sbjct: 350 FFKGLGDWKEGMRAYREFRRMLEQGIE 376



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 115/256 (44%), Gaps = 20/256 (7%)

Query: 172 VTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           VTC  L+ +L       + +  F R+    C+P+  +Y  ++ ALCR G  +KA   + +
Sbjct: 1   VTCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAE 60

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M     +  PDV+TY ++I + CK            RRI  A   F  M      PDVV 
Sbjct: 61  MARE--KLVPDVFTYNVVIDTLCK-----------ARRISRAIEFFETMP----EPDVVT 103

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN L+ G CK  R+ +A  LF  M   G  P+ VTY + I  +  + + + A  +++ M 
Sbjct: 104 YNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMA 163

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
           +     PT  SY  II+ LC+  +V +A     E+   G  P   TY  +   L   +  
Sbjct: 164 S-RKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRL 222

Query: 410 SLLDDGLRKRIRDGIE 425
               D L   + +G +
Sbjct: 223 HEAKDLLTVMVENGFQ 238



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 107/244 (43%), Gaps = 47/244 (19%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC--------------- 215
           + T LI+ L     + EA   F  M +  C PD+  + V+++ LC               
Sbjct: 243 TFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNY 302

Query: 216 ------------------RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
                             R   F++A  LL++M   G   PP+V TYT        +   
Sbjct: 303 PACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGV--PPNVVTYTAFFKGLGDW--- 357

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
              ++ +R     A   FR ML +G  PD+VAYN L+DG CK  R++ A ++   M++ G
Sbjct: 358 ---KEGMR-----AYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSG 409

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             PN VTYN+ + ++    +++   E++  M +     P  ++++ ++  L   G+   A
Sbjct: 410 LPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQ-PDVATWSTLVAGLFMVGQADAA 468

Query: 378 RDFL 381
             FL
Sbjct: 469 YSFL 472



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 114/290 (39%), Gaps = 51/290 (17%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           VF +    +  +  L+ M+ R      T  S   +I  L +   V++A   F  MK   C
Sbjct: 145 VFCKMCQFETAYGLLQLMASRKCSP--TVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGC 202

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PD   YN +I+ LC     ++A+ LL  M   GF+  PD  T+T LI   C        
Sbjct: 203 KPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQ--PDKITFTALIEGLCTTD----- 255

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI----------------- 303
                 RI EA  LF+ M  +G  PD+V +  L+   C   ++                 
Sbjct: 256 ------RIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPACPEAV 309

Query: 304 ----------------ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
                           +RA  L   M ++G  PN VTY +F +      E  +A    R+
Sbjct: 310 ILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRR 369

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           M  L  G+ P   +Y  ++   C+A R+  A   +  +   G  P   TY
Sbjct: 370 M--LEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTY 417



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 15/143 (10%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L+ M+RRG    V T   T   K LG+      A   F RM +    PD+ AYNV+++ 
Sbjct: 331 LLQKMARRGVPPNVVT--YTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDG 388

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+    + A  ++  M+  G   PP++ TY  L+  +C+ G           ++     
Sbjct: 389 FCKADRLDMAEKMVRYMDQSGL--PPNIVTYNTLVGHHCRKG-----------KVEAIGE 435

Query: 274 LFRLMLFKGFVPDVVAYNCLIDG 296
           L   M+ +G  PDV  ++ L+ G
Sbjct: 436 LLHTMVSRGRQPDVATWSTLVAG 458


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 124/247 (50%), Gaps = 15/247 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           NE+T   +   F +   +  +  F ++   R  G L   ++    +  L + G ++ A  
Sbjct: 227 NEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSL-EAAAYPGYLDALCKAGYLDRARK 285

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
           +   ++Q    PDV  Y+++IN   R G F+ +  LLE M   G +  PDV TY+ LI+ 
Sbjct: 286 SVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVK--PDVVTYSTLINV 343

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            CK            R+  +A  L  LM   G  P+VV YN ++DG CK+ +++    ++
Sbjct: 344 LCK-----------ERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVY 392

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
           + M K  C P+ VTY+  +   S    +D A+++   +++   G P +++Y+ +I +LC 
Sbjct: 393 EMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREG-PDAAAYSMVITSLCR 451

Query: 371 AGRVLEA 377
           AG++ EA
Sbjct: 452 AGKLEEA 458



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 102/191 (53%), Gaps = 17/191 (8%)

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
           Y +V++ LC  G  N+A  L+   EL G   P  V+ Y  +I+  C+             
Sbjct: 57  YKLVVDGLCGAGMANQALELVR--ELSGVYTPT-VFIYNGIITGLCRAS----------- 102

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           R+ +A  +   M+ +  VP+V  Y  L++G C++ + + A E+F +M + GC PN +TY 
Sbjct: 103 RVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYG 162

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELV 385
           + I++ S   EID+A+ +M + ++L   +PT   + T I+  LC+A R+ +A  F+ E+ 
Sbjct: 163 TLIQHLSRAGEIDEALRVMIEQRSLE--LPTDVITCTTIVGGLCKASRLDDALKFMEEMR 220

Query: 386 DGGSVPREYTY 396
             G  P E TY
Sbjct: 221 QMGVRPNEVTY 231



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 15/223 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V +A     +M +    P+V+ Y +++N LCR      AR + ++M+  G  C P+  TY
Sbjct: 104 VMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNG--CKPNPITY 161

Query: 245 TILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
             LI    + G +    R  I +R  E               DV+    ++ G CK  R+
Sbjct: 162 GTLIQHLSRAGEIDEALRVMIEQRSLE------------LPTDVITCTTIVGGLCKASRL 209

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363
           + AL+  ++M + G  PN VTY++ +  +    E+D+ I    + +    G   +++Y  
Sbjct: 210 DDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPG 269

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            + ALC+AG +  AR  + EL   G VP   TY ++ +    A
Sbjct: 270 YLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARA 312



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 13/218 (5%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R +G +    + + LI      G  + +L     M++   +PDV  Y+ +IN LC+   F
Sbjct: 291 RQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKF 350

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
             A  LLE ME  G   PP+V TY  ++   CK G           ++ E + ++ +ML 
Sbjct: 351 QDAFRLLELMEAAG--SPPNVVTYNSVMDGLCKSG-----------KMDEVHRVYEMMLK 397

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
               PDVV Y+ +++G  K   ++ A++LF+ +      P+   Y+  I       ++++
Sbjct: 398 SRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEE 457

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           A  M   M+    G     +   ++ ALC+A R   AR
Sbjct: 458 ACGMYHGMEVTVAGDNICRALAGLVAALCDAKRTDSAR 495



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 115/267 (43%), Gaps = 29/267 (10%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R N  K   +  ++M R  NG      +   LI+ L   G ++EAL      +      D
Sbjct: 135 RSNKTKLAREVFQEMKR--NGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTD 192

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V     ++  LC+    + A   +E+M   G R  P+  TY+ L+  + ++G        
Sbjct: 193 VITCTTIVGGLCKASRLDDALKFMEEMRQMGVR--PNEVTYSNLVHGFRQHG-------- 242

Query: 264 IRRRIWEANHLFRLMLF-------KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                     L R++ F       KG   +  AY   +D  CK   ++RA +  +++ + 
Sbjct: 243 ---------ELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQS 293

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           G +P+ VTY+  I  ++   + D ++E++  M+  N   P   +Y+ +I+ LC+  +  +
Sbjct: 294 GVVPDVVTYSMLINTFARAGQFDASLELLEDMRR-NGVKPDVVTYSTLINVLCKERKFQD 352

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDAL 403
           A   L  +   GS P   TY  V D L
Sbjct: 353 AFRLLELMEAAGSPPNVVTYNSVMDGL 379



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 5/156 (3%)

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           R +  E   LF L+  +G V     Y  ++DG C      +ALEL  +++     P    
Sbjct: 32  RSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGV-YTPTVFI 90

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YN  I      + +  A +++ KM      VP   +YT +++ LC + +   AR+   E+
Sbjct: 91  YNGIITGLCRASRVMDAYKVLEKMVE-ESIVPNVFTYTILLNGLCRSNKTKLAREVFQEM 149

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
              G  P   TY  +   L+ A E   +D+ LR  I
Sbjct: 150 KRNGCKPNPITYGTLIQHLSRAGE---IDEALRVMI 182



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 13/183 (7%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L R ++  G   D  A+  L     +  +    + LF  +  +G +    TY   + 
Sbjct: 3   AKLLERSVVEAGAKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVD 62

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                   ++A+E++R++  +    PT   Y  II  LC A RV++A   L ++V+   V
Sbjct: 63  GLCGAGMANQALELVRELSGVY--TPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIV 120

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKH---KELLKCG 447
           P  +TY ++ + L  + +  L  +  ++  R+G         K  PI      + L + G
Sbjct: 121 PNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGC--------KPNPITYGTLIQHLSRAG 172

Query: 448 EID 450
           EID
Sbjct: 173 EID 175


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+      A  L E+M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A    ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWGLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  ++E A ELF++M   G +P
Sbjct: 186 ------DLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +  A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 240 NGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDG 320



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 15/188 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG +    + T LI    + G V  A+  + +M      PD+  YN +I  LC+ G+  +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFK 281
           A+ L+++M + G +  PD  TYT LI   CK G ++T      R+R+ + N   RL    
Sbjct: 295 AQDLIDEMSMKGLK--PDKITYTTLIDGSCKEGDLETA--XXYRKRMIKEN--IRL---- 344

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
               D VAY  LI G C+  R   A ++  +M   G  P   TY   I  +    ++   
Sbjct: 345 ----DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 342 IEMMRKMQ 349
            +++++MQ
Sbjct: 401 SKLLKEMQ 408



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 40/247 (16%)

Query: 188 ALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
            L ++  M  F C   +   A  ++   + R G  + +      +E  G +   D+Y ++
Sbjct: 12  TLQSYCTMIHFLCTHQMIPEAKTLIQIVVSRKGKGSASAVFAXJLETKGTQIS-DIYVFS 70

Query: 246 ILISSYCKYGMQTGCRKAIR-----------------RRIWEANHLFRLMLFK------- 281
            LI +Y + G     R AI                  R++ E  HL +L  FK       
Sbjct: 71  GLIIAYLESGF---LRDAIECYRLTKEHKFRVPFDTCRKVLE--HLMKLKYFKLVWGFYE 125

Query: 282 -----GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
                G+   +  +N L+    K   I  A  +FD + K G  P+ V++N+ +  Y  + 
Sbjct: 126 ESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLG 185

Query: 337 EIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
           ++D+   +   MQ    GV P   +Y+ +I+ LC+  ++ +A +   E++D G VP   T
Sbjct: 186 DLDEGFRLKNAMQA--SGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVT 243

Query: 396 YKLVCDA 402
           +  + D 
Sbjct: 244 FTTLIDG 250


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 11/234 (4%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           +TSSV  L+  L     V+ A   F    + R  PD+Y +N VI+ LCR+G   KA  + 
Sbjct: 155 STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVA 214

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           + ++  G    P V TY  LI  YCK G            ++  + L + M+  G  P  
Sbjct: 215 KDIKAWGL--APSVATYNSLIDGYCKKGGAG--------NMYHVDMLLKEMVEAGISPTA 264

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V +  LI+G CK      A+ +F++M ++G   + VTYNS I       ++++ +++M +
Sbjct: 265 VTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEE 324

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           M++L    P   ++  ++   C+ G + +A D++  + +    P    Y ++ D
Sbjct: 325 MEDLGLS-PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILID 377



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 16/231 (6%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           C++K   ++G++ +A      M +    PDV  YN++I+   R+G    A  + E M   
Sbjct: 339 CVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKK 398

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EANHLFRLMLFKGFVPDVVAYNC 292
           G    P+V TY  LI+ + + G             W  A+ L   M  KG   DVV YN 
Sbjct: 399 GIS--PNVTTYNCLITGFSRSG------------DWRSASGLLDEMKEKGIEADVVTYNV 444

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI   C    + +A++L D+M++ G  PN +TYN+ I+ +     I  A E+  +M+   
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                  +Y   I   C+ G++ EA D L E++D   VP   TY+ + + +
Sbjct: 505 KRA-NVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGM 554



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 15/171 (8%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M+++G    VTT    CLI      G    A      MK+     DV  YNV+I ALC  
Sbjct: 395 MAKKGISPNVTT--YNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCK 452

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G   KA  LL++M   G    P+  TY  +I  +C  G      + IR R+ +       
Sbjct: 453 GEVRKAVKLLDEMSEVGLE--PNHLTYNTIIQGFCDKGNIKSAYE-IRTRMEKCRKR--- 506

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
                   +VV YN  I   C+  +++ A +L ++M  K  +PN +TY + 
Sbjct: 507 -------ANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 113/227 (49%), Gaps = 15/227 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-FNKARFLLEQ 229
           S T LI      G   EA+  F +M++  C+P +  YNV++N   ++G  +NK   L+E+
Sbjct: 210 SYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEK 269

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M+  G    PD YTY  LI         T C++    +  EA  +F  M   GF  D V 
Sbjct: 270 MKSDGI--APDAYTYNTLI---------TCCKRGSLHQ--EAAQVFEEMKAAGFSHDKVT 316

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN L+D   K++R + A+++ ++M   G  P+ VTYNS I  Y+    +D+A+E+  +M 
Sbjct: 317 YNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA 376

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
                 P   +YT ++     AG+V  A +   E+ + G  P   T+
Sbjct: 377 E-KGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTF 422



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 19/298 (6%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
           F H+++T   +  V+ + +  K     L +M   G    + T     LI     +G+++E
Sbjct: 310 FSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVT--YNSLISAYARDGMLDE 367

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A+    +M +   +PDV+ Y  +++   R G    A  + E+M   G  C P++ T+   
Sbjct: 368 AMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAG--CKPNICTFNAF 425

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I  Y   G           +  +   +F  +   G  PD+V +N L+    +        
Sbjct: 426 IKMYGNRG-----------KFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVS 474

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
            +F +M + G +P R T+N+ I  YS     ++A+ + R+M  L+ GV P  S+Y  ++ 
Sbjct: 475 GVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM--LDAGVTPDLSTYNTVLA 532

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           AL   G   ++   LAE+ DG   P E TY  +  A    +E  L+   L + +  G+
Sbjct: 533 ALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLM-HSLAEEVYSGV 589



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 122/282 (43%), Gaps = 33/282 (11%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           VF +      +    K+M R G   +    +   LI      G   +A+  + RM     
Sbjct: 463 VFGQNGMDSEVSGVFKEMKRAGF--VPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGV 520

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD+  YN V+ AL R G + ++  +L +ME    RC P+  TY  L+ +Y   G + G 
Sbjct: 521 TPDLSTYNTVLAALARGGMWEQSEKVLAEME--DGRCKPNELTYCSLLHAYAN-GKEIGL 577

Query: 261 RKAIRRRIW-------------------------EANHLFRLMLFKGFVPDVVAYNCLID 295
             ++   ++                         EA   F  +  +GF PD+   N ++ 
Sbjct: 578 MHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVS 637

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
              +   + +A E+ D M ++G  P+  TYNS +  +S   +  K+ E++R++  L  G+
Sbjct: 638 IYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREI--LAKGI 695

Query: 356 -PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            P   SY  +I+A C   R+ +A    +E+ D G VP   TY
Sbjct: 696 KPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITY 737



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 16/211 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+ V  +  L+ EA   F  +K+    PD+   N +++   R     KA  +L+ M+  G
Sbjct: 600 LVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERG 659

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           F   P + TY  L+  + +                ++  + R +L KG  PD+++YN +I
Sbjct: 660 FT--PSMATYNSLMYMHSRSA-----------DFGKSEEILREILAKGIKPDIISYNTVI 706

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              C+  R+  A  +F +M   G +P+ +TYN+FI  Y+  +  ++AI ++R M  + HG
Sbjct: 707 YAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYM--IKHG 764

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
             P  ++Y  I+   C+  R  EA+ F+ +L
Sbjct: 765 CRPNQNTYNSIVDGYCKLNRKDEAKLFVEDL 795



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 108/255 (42%), Gaps = 20/255 (7%)

Query: 152 WDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
           W+ +  +  +   + +   + T   LI       L  EA   F  MK      D   YN 
Sbjct: 260 WNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNA 319

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +++   +     +A  +L +MEL GF   P + TY  LIS+Y + GM           + 
Sbjct: 320 LLDVYGKSHRPKEAMKVLNEMELNGFS--PSIVTYNSLISAYARDGM-----------LD 366

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA  L   M  KG  PDV  Y  L+ G  +  ++E A+ +F++M   GC PN  T+N+FI
Sbjct: 367 EAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFI 426

Query: 330 RYYSVVNEIDKAIEMMRKMQNLN--HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
           + Y       K ++MM+    +N     P   ++  ++    + G   E      E+   
Sbjct: 427 KMYG---NRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483

Query: 388 GSVPREYTYKLVCDA 402
           G VP   T+  +  A
Sbjct: 484 GFVPERETFNTLISA 498



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 15/202 (7%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
             ++  RG    +TT  +  ++ + G   +V +A      MK+    P +  YN ++   
Sbjct: 617 FSELKERGFSPDITT--LNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMH 674

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
            R  +F K+  +L ++   G +  PD+ +Y  +I +YC+             R+ +A+ +
Sbjct: 675 SRSADFGKSEEILREILAKGIK--PDIISYNTVIYAYCR-----------NTRMRDASRI 721

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           F  M   G VPDV+ YN  I         E A+ +   M K GC PN+ TYNS +  Y  
Sbjct: 722 FSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781

Query: 335 VNEIDKAIEMMRKMQNLNHGVP 356
           +N  D+A   +  ++NL+   P
Sbjct: 782 LNRKDEAKLFVEDLRNLDPHAP 803



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 12/149 (8%)

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           R+  A +LF  +   GF  DV +Y  LI     + R   A+ +F  M ++GC P  +TYN
Sbjct: 188 RVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPTLITYN 247

Query: 327 SFIRYYSVV----NEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRV-LEARDF 380
             +  +  +    N+I   +E M+     + G+ P + +Y  +I   C+ G +  EA   
Sbjct: 248 VILNVFGKMGTPWNKITSLVEKMK-----SDGIAPDAYTYNTLI-TCCKRGSLHQEAAQV 301

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEP 409
             E+   G    + TY  + D    +  P
Sbjct: 302 FEEMKAAGFSHDKVTYNALLDVYGKSHRP 330


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I        ++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 101/201 (50%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWGLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M   G +PN V
Sbjct: 186 ---NLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+D  
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQDLT 299

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+   G  P + TY  + D 
Sbjct: 300 DEMSMKGLKPDKITYTTLIDG 320



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG +    + T LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANELFDEMLD-----NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L ++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK--PDKITYTTLIDGSCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GHLETAFE--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 11/234 (4%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           +TSSV  L+  L     V+ A   F    + R  PD+Y +N VI+ LCR+G   KA  + 
Sbjct: 155 STSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVA 214

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           + ++  G    P V TY  LI  YCK G            ++  + L + M+  G  P  
Sbjct: 215 KDIKAWGL--APSVATYNSLIDGYCKKGGAG--------NMYHVDMLLKEMVEAGISPTA 264

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V +  LI+G CK      A+ +F++M ++G   + VTYNS I       ++++ +++M +
Sbjct: 265 VTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEE 324

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           M++L    P   ++  ++   C+ G + +A D++  + +    P    Y ++ D
Sbjct: 325 MEDLGLS-PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILID 377



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 16/231 (6%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           C++K   ++G++ +A      M +    PDV  YN++I+   R+G    A  + E M   
Sbjct: 339 CVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKK 398

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EANHLFRLMLFKGFVPDVVAYNC 292
           G    P+V TY  LI+ + + G             W  A+ L   M  KG   DVV YN 
Sbjct: 399 GIS--PNVTTYNCLITGFSRSG------------DWRSASGLLDEMKEKGIEADVVTYNV 444

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI   C    + +A++L D+M++ G  PN +TYN+ I+ +     I  A E+  +M+   
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
                  +Y   I   C+ G++ EA D L E++D   VP   TY+ + + +
Sbjct: 505 KRA-NVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGM 554



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 75/171 (43%), Gaps = 15/171 (8%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M+++G    VTT    CLI      G    A      MK+     DV  YNV+I ALC  
Sbjct: 395 MAKKGISPNVTT--YNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCK 452

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G   KA  LL++M   G    P+  TY  +I  +C  G      + IR R+ +       
Sbjct: 453 GEVRKAVKLLDEMSEVGLE--PNHLTYNTIIQGFCDKGNIKSAYE-IRTRMEKCRKR--- 506

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
                   +VV YN  I   C+  +++ A +L ++M  K  +PN +TY + 
Sbjct: 507 -------ANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 119/258 (46%), Gaps = 31/258 (12%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G  +   +   ++  + + G    AL    +M++   +PDV  Y+ +I+ LC+ G+ +
Sbjct: 254 GKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHS 313

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------------- 266
            A++L  +M   G    P+V+TY  +I  +C +G  +  ++ +R                
Sbjct: 314 DAQYLFSEMLEKGI--APNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNA 371

Query: 267 ---------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    +++EA  L   ML +   PD V YN +I G CK  R + A  +FD M    
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-- 429

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P+ VT+N+ I  Y     +D+ ++++R++      V  +++Y  +IH  CE   +  A
Sbjct: 430 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL-VANTTTYNTLIHGFCEVDNLNAA 486

Query: 378 RDFLAELVDGGSVPREYT 395
           +D   E++  G  P   T
Sbjct: 487 QDLFQEMISHGVCPDTIT 504



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 112/275 (40%), Gaps = 59/275 (21%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  EG V EA A   +M       DV  Y  ++N +C++G+   A  LL +ME   
Sbjct: 232 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 291

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PDV  Y+ +I   CK G  +           +A +LF  ML KG  P+V  YNC+I
Sbjct: 292 IK--PDVVIYSAIIDRLCKDGHHS-----------DAQYLFSEMLEKGIAPNVFTYNCMI 338

Query: 295 DGCCKTYR-----------IER------------------------ALELFDDMNKKGCI 319
           DG C   R           IER                        A +L D+M  +   
Sbjct: 339 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 398

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ VTYNS I  +   N  D A  M   M +     P   ++  II   C A RV E   
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-----PDVVTFNTIIDVYCRAKRVDEGMQ 453

Query: 380 FLAELVDGGSVPREYTYKLV------CDALNAAEE 408
            L E+   G V    TY  +       D LNAA++
Sbjct: 454 LLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 488



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 115/234 (49%), Gaps = 33/234 (14%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +I  L ++G  ++A   F  M +    P+V+ YN +I+  C  G ++ A+ LL  M  
Sbjct: 300 SAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM-- 357

Query: 233 PGFRCPPDVYTYTILISSYCKYG----MQTGCRKAIRRRIW------------------- 269
                 PDV T+  LIS+  K G     +  C + + R I+                   
Sbjct: 358 IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRF 417

Query: 270 -EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            +A H+F LM      PDVV +N +ID  C+  R++  ++L  +++++G + N  TYN+ 
Sbjct: 418 DDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 473

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           I  +  V+ ++ A ++ ++M  ++HGV P + +   +++  CE  ++ EA +  
Sbjct: 474 IHGFCEVDNLNAAQDLFQEM--ISHGVCPDTITCNILLYGFCENEKLEEALELF 525



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 109/236 (46%), Gaps = 14/236 (5%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+E +     + +     +   YN +I+  C V N N A+ L ++M   G    PD  T 
Sbjct: 448 VDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV--CPDTITC 505

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            IL+  +C+             ++ EA  LF ++       D VAYN +I G CK  +++
Sbjct: 506 NILLYGFCE-----------NEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVD 554

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A +LF  +   G  P+  TYN  I  +   + I  A  +  KM++  H  P +S+Y  +
Sbjct: 555 EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHE-PDNSTYNTL 613

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
           I    +AG + ++ + ++E+   G     +T K+  + +    +  ++++ LR +I
Sbjct: 614 IRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIICRVSDEEIIENYLRPKI 669



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 112/249 (44%), Gaps = 27/249 (10%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A++ + +M+  R   ++Y++N++I   C     + +     ++   GF+  PDV T+  L
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQ--PDVVTFNTL 182

Query: 248 ISSYC------------KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           +   C             Y ++TG          EA  LF  M+  G  P V+ +N LI+
Sbjct: 183 LHGLCLEDRISEALALFGYMVETG--------FLEAVALFDQMVEIGLTPVVITFNTLIN 234

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G C   R+  A  L + M  KG   + VTY + +     + +   A+ ++ KM+   H  
Sbjct: 235 GLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEE-THIK 293

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA----AEEPSL 411
           P    Y+ II  LC+ G   +A+   +E+++ G  P  +TY  + D   +    ++   L
Sbjct: 294 PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 353

Query: 412 LDDGLRKRI 420
           L D + + I
Sbjct: 354 LRDMIEREI 362



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 90/210 (42%), Gaps = 15/210 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V+ R   V      L+++SRRG   +  T++   LI    E   +N A   F  M     
Sbjct: 441 VYCRAKRVDEGMQLLREISRRG--LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD    N+++   C      +A  L E +++   +   D   Y I+I   CK       
Sbjct: 499 CPDTITCNILLYGFCENEKLEEALELFEVIQMS--KIDLDTVAYNIIIHGMCK------- 549

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ EA  LF  +   G  PDV  YN +I G C    I  A  LF  M   G  P
Sbjct: 550 ----GSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEP 605

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           +  TYN+ IR      EIDK+IE++ +M++
Sbjct: 606 DNSTYNTLIRGCLKAGEIDKSIELISEMRS 635



 Score = 38.1 bits (87), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +G+ V   WD    +   G    V T +V  +I     +  +++A   F++MK     PD
Sbjct: 549 KGSKVDEAWDLFCSLPIHGVEPDVQTYNV--MISGFCGKSAISDANVLFHKMKDNGHEPD 606

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              YN +I    + G  +K+  L+ +M   GF    D +T  +     C+   +      
Sbjct: 607 NSTYNTLIRGCLKAGEIDKSIELISEMRSNGF--SGDAFTIKMAEEIICRVSDEEIIENY 664

Query: 264 IRRRI 268
           +R +I
Sbjct: 665 LRPKI 669


>gi|255580313|ref|XP_002530985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529437|gb|EEF31397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 753

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 135/279 (48%), Gaps = 16/279 (5%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F ++  T  ++  +  R + +      L DM ++G            
Sbjct: 125 ALQFFRWVERAGLFKNDRDTHMKIIEILGRASKLNHARCILLDMPKKGVE--WDEYMFVV 182

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+  G+ G+V EA+  F +M +      + +Y+ +   + R G +  A+ +  +M   G
Sbjct: 183 LIESYGKAGIVQEAVKIFNKMNELGVERSIKSYDALFKVILRRGRYMMAKRVFNKMLNDG 242

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P  +TY I++  +            +  R+  A   +  M  +G  PDVV YN +I
Sbjct: 243 IQ--PTRHTYNIMLWGFF-----------LSLRLETAMRFYDDMKNRGISPDVVTYNTMI 289

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G  +  ++E A +LF +M  K   P  ++Y + I+ Y  V+ +D  + ++ +M++ N  
Sbjct: 290 NGFYRFKKMEEAEKLFVEMKGKNIAPTVISYTTMIKGYVAVDRVDDGLRLLEEMKSFNIK 349

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
            P   +Y+ ++  LC+A ++ EA+D L E+V     P++
Sbjct: 350 -PNVHTYSTLLPGLCDAWKMTEAKDILIEMVARHLAPKD 387



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 99/231 (42%), Gaps = 31/231 (13%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  +++P      D Y + +LI SY K G+            +
Sbjct: 148 IIEILGRASKLNHARCIL--LDMPKKGVEWDEYMFVVLIESYGKAGIVQEAVKIFNKMNE 205

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  ++I            R R   A  +F  ML  G  P    YN ++ G   + R+E 
Sbjct: 206 LGVERSIKSYDALFKVILRRGRYMMAKRVFNKMLNDGIQPTRHTYNIMLWGFFLSLRLET 265

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A+  +DDM  +G  P+ VTYN+ I  +    ++++A ++  +M+  N   PT  SYT +I
Sbjct: 266 AMRFYDDMKNRGISPDVVTYNTMINGFYRFKKMEEAEKLFVEMKGKNIA-PTVISYTTMI 324

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLL 412
                  RV +    L E+      P  +TY      +CDA    E   +L
Sbjct: 325 KGYVAVDRVDDGLRLLEEMKSFNIKPNVHTYSTLLPGLCDAWKMTEAKDIL 375



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 19/188 (10%)

Query: 207 YNVVINALCRVGNFNKARFLLEQM---EL---PGFRCPPDVYTYTILISSYCKYGMQTGC 260
           Y V+I   C+   +++A   L+++   E+   P      +   Y  +I   C +G QTG 
Sbjct: 426 YGVLIENFCKAEEYDRAVKYLDKLIEKEIILRPQSTLEIESNAYNPMIQYLCSHG-QTG- 483

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                    +A   FR ++ KG V D +A+N LI G  K    + A E+F  M K+G   
Sbjct: 484 ---------KAEIFFRQLMKKG-VQDPLAFNNLICGHAKEGYPDSAFEIFKIMGKRGVPR 533

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +   Y   I  Y    E   A   +  M    H VP  S +  ++ +L E GRV  A   
Sbjct: 534 DADAYRLIIESYLRKGEPADAKTALDGMLEDGH-VPDPSVFRSVMESLFEDGRVQTASRV 592

Query: 381 LAELVDGG 388
           +  +V+ G
Sbjct: 593 MKSMVEKG 600



 Score = 41.6 bits (96), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 69/184 (37%), Gaps = 17/184 (9%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           AYN +I  LC  G   KA     Q+   G + P     +  LI  + K G          
Sbjct: 468 AYNPMIQYLCSHGQTGKAEIFFRQLMKKGVQDP---LAFNNLICGHAKEGYPDS------ 518

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
                A  +F++M  +G   D  AY  +I+   +      A    D M + G +P+   +
Sbjct: 519 -----AFEIFKIMGKRGVPRDADAYRLIIESYLRKGEPADAKTALDGMLEDGHVPDPSVF 573

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT-PIIHALCEAGRVLEARDFLAEL 384
            S +        +  A  +M+ M  +  GV  +      I+ AL   G V EA   +  L
Sbjct: 574 RSVMESLFEDGRVQTASRVMKSM--VEKGVKENMDLVGKILEALLMRGHVEEALGRIELL 631

Query: 385 VDGG 388
           +  G
Sbjct: 632 MQSG 635



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 112/293 (38%), Gaps = 56/293 (19%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           + +++   +I+ L   G   +A   F+R    +   D  A+N +I    + G  + A  +
Sbjct: 464 IESNAYNPMIQYLCSHGQTGKA-EIFFRQLMKKGVQDPLAFNNLICGHAKEGYPDSAFEI 522

Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
            + M   G   P D   Y ++I SY + G     + A+             ML  G VPD
Sbjct: 523 FKIMGKRG--VPRDADAYRLIIESYLRKGEPADAKTALDG-----------MLEDGHVPD 569

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN----------------------RVT 324
              +  +++   +  R++ A  +   M +KG   N                      R+ 
Sbjct: 570 PSVFRSVMESLFEDGRVQTASRVMKSMVEKGVKENMDLVGKILEALLMRGHVEEALGRIE 629

Query: 325 -------YNSFIRYYSVVNEIDKAIEMMRKMQ-------NLNHGVPTSSSYTPIIHALCE 370
                  + +F    SV++E  K I  ++ +        NL+       SY  ++ AL  
Sbjct: 630 LLMQSGFHVNFDDLLSVLSEKGKTIAALKLLDFALERDFNLDF-----KSYDKVLDALLA 684

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           AG+ L A   L +++  G V    + K +  +LN  E  +   D L + I+ G
Sbjct: 685 AGKTLNAYSILCKIMQKGGVSDWSSSKDLIKSLN-QEGNTKQADILSRMIKGG 736


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 14/223 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+   +T LI  +CK G     
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--VPNGVIFTTLIDGHCKNG----- 261

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +  +PD++ YN LI G CK   +++   L D+M+ KG  P
Sbjct: 262 ------RVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKP 315

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +++TY + I       ++D A E  ++M   N  +    +YT +I  LC+ GR ++A   
Sbjct: 316 DKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLD-EVAYTALISGLCQEGRSVDAEKM 374

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           L E+++ G  P   TY ++ +      +       L++  RDG
Sbjct: 375 LREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDG 417



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 142 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 191

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 192 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVP 245

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N V + + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +  
Sbjct: 246 NGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSL---LPDLITYNTLIYGLCKKGDLKQVH 302

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
             + E+   G  P + TY  + D 
Sbjct: 303 HLIDEMSMKGLKPDKITYTTLIDG 326



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 19/205 (9%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG + TT     LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +
Sbjct: 246 NGVIFTT-----LIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQ 300

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
              L+++M + G +  PD  TYT LI   CK G       A   R        + M+ + 
Sbjct: 301 VHHLIDEMSMKGLK--PDKITYTTLIDGCCKEG---DLDTAFEHR--------KQMIQEN 347

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
              D VAY  LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  
Sbjct: 348 IRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGS 407

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHA 367
           +++++MQ   H VP+  +Y  +++ 
Sbjct: 408 KLLKEMQRDGH-VPSVVTYNVLMNG 431



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 30/243 (12%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   +   A +++   + R G  + +      +E  G +   D+Y +
Sbjct: 17  HTLHSYCTMIHFLCTHQMLWEAKSLIQVVVSRKGKGSASAVFAAILETKGTQ-RSDIYVF 75

Query: 245 TILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GFVPDVVA 289
           + LI++Y + G       C +  R  + W           HL +L  FK   GF  +++ 
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILE 135

Query: 290 ---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
                    +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  + ++D+
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
              +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G VP    +  +
Sbjct: 196 GFRLKSAM--LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTL 253

Query: 400 CDA 402
            D 
Sbjct: 254 IDG 256


>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 133/291 (45%), Gaps = 26/291 (8%)

Query: 119 YHWVERFFDFFHNEMT----------CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVT 168
           +H +ER    F  ++T          CK +G           +WDFL DM      E + 
Sbjct: 64  HHDLERPLTAFSQKITPGLVEQVLKRCKNLGFSAHSSKQFPLIWDFLSDMRETRCCE-IC 122

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
                 + +      L  +A+  F++M  F  +  V   + ++  LC+  +  +A+   +
Sbjct: 123 PEIFWLIFRAYCRANLPGDAIRAFHQMGDFGVKAGVGDVDQLLYVLCKRKHVKQAQEFFD 182

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           ++ +      P+  TY+IL+  +   G  +           EA  LF  M  +G   DVV
Sbjct: 183 KVNV---EVMPNAKTYSILMRGWGDVGDSS-----------EARKLFEEMRERGCAVDVV 228

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           AYN L++  CK   ++ A +LF +M   G  P+  +Y+ FIR Y  VN+I  A +++ +M
Sbjct: 229 AYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRM 288

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           +  N  VP   +Y  I+  LC++ +V EA   L E+++ G  P  ++Y  +
Sbjct: 289 RRYNL-VPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAI 338



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 122/255 (47%), Gaps = 23/255 (9%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + L++  G+ G  +EA   F  M++  C  DV AYN ++ ALC+ GN ++A  L  +M
Sbjct: 194 TYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREM 253

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    PD  +Y+I I +YC+              I  A  +   M     VP+V  Y
Sbjct: 254 GSNGL--APDACSYSIFIRAYCEVN-----------DIHSAFQVLDRMRRYNLVPNVFTY 300

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           NC++   CK+ +++ A +L D+M ++G  P+  +YN+   ++    E++KA+ ++ +M+ 
Sbjct: 301 NCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEK 360

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAA 406
            N  +P   +Y  ++  L   GR     D    + + G  P   TY ++    C      
Sbjct: 361 EN-CMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHGFCKKKGKL 419

Query: 407 EEPS-----LLDDGL 416
           EE       ++DDG+
Sbjct: 420 EEACKYFEMMIDDGI 434



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 14/155 (9%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +  C++K L +   V+EA      M +    PD+++YN +    C     NKA  L+ +M
Sbjct: 299 TYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRM 358

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E     C PD +TY +++    + G           R      ++  M  +GF P    Y
Sbjct: 359 EKEN--CMPDRHTYNMVLKMLLRVG-----------RFDRVTDVWGGMEERGFYPAASTY 405

Query: 291 NCLIDGCCKTY-RIERALELFDDMNKKGCIPNRVT 324
             ++ G CK   ++E A + F+ M   G  P   T
Sbjct: 406 AVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCT 440


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G L    +++ L+  L       + L  F  +     +PD Y Y VV+  LC + +F
Sbjct: 182 RDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDF 241

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           NKA+ ++ Q E  G  C   + TY + I+  CK            +R+WEA  + R +  
Sbjct: 242 NKAKEIINQAEGNG--CSLSIVTYNVFINGLCK-----------SKRVWEAVEVKRSLGE 288

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           KG   D+V Y  L+ G C+    E  +E+ D+M + G +P+    +  I     +  I+ 
Sbjct: 289 KGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEG 348

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A E++ K+  L   VP    Y  +I++LC+ G++ EA    + + + G  P + TY ++ 
Sbjct: 349 AFELLNKVGKLGV-VPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILI 407

Query: 401 DAL 403
           D  
Sbjct: 408 DGF 410



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 125/286 (43%), Gaps = 31/286 (10%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G + + ++V+ LI+ L + G +  A     ++ +    P+++ YN +IN+LC+ G   +A
Sbjct: 325 GYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEA 384

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCK--------YGMQTGCRKAIRRRIWEANH-- 273
             L   M   G   P DV TYTILI  + +        Y         I   ++  N   
Sbjct: 385 ELLFSVMAERGLN-PNDV-TYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMI 442

Query: 274 --------------LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                         LF+ M+ KG  P V  Y  LI G CK   + +A +L+ +M  KG  
Sbjct: 443 NCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIA 502

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN VT+ + I     +N++ +A ++  +M  L   +P   +Y  +I   C  G    A +
Sbjct: 503 PNTVTFTALICGLCQINKMAEASKLFDEMVELKI-LPNEVTYNVLIEGHCREGNTTRAFE 561

Query: 380 FLAELVDGGSVPREYTYK----LVCDALNAAEEPSLLDDGLRKRIR 421
            L E++  G  P  YTY+     +C     +E    ++D   K  R
Sbjct: 562 LLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQR 607



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 112/259 (43%), Gaps = 28/259 (10%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI   G    ++ A   F +M +      VY+YN +IN  C+ G    A  L ++M
Sbjct: 402 TYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEM 461

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM----------QTG--------------CRKAIRR 266
              G +  P V TYT LIS YCK G+           TG              C      
Sbjct: 462 VDKGLK--PTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQIN 519

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++ EA+ LF  M+    +P+ V YN LI+G C+     RA EL D+M KKG  P+  TY 
Sbjct: 520 KMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYR 579

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             I        + +A E +  + +  H       YT ++   C+ GR+ EA     E+V 
Sbjct: 580 PLIAGLCSTGRVSEAKEFINDLHH-KHQRLDELCYTALLQGFCKEGRIKEALVARQEMVG 638

Query: 387 GGSVPREYTYK-LVCDALN 404
            G      +Y  L+  ALN
Sbjct: 639 RGLQMDLVSYAVLISGALN 657



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 17/237 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +  N+K  ++F   M   G G +  + + T L+  L + G VNEA   F RM      
Sbjct: 689 FIKSGNLKKAFEFWYIMI--GEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAI 746

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+   Y   ++ L + GN   A  L   M    F    +  TY ILI  YC+ G      
Sbjct: 747 PNHITYGCFLDHLTKEGNMENALQLHNAMLQGSF---ANTVTYNILIRGYCQIG------ 797

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                +  EA  L  +M+  G VPD + Y+  I   CK   ++ A+++++ M ++G  P+
Sbjct: 798 -----KFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPD 852

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           RV +N  I    +  E+D+A+++   M  L    PT S+Y  ++  L +  R+ + +
Sbjct: 853 RVVFNFLIHACCLNGELDRALQLRNDMM-LRGLKPTQSTYHSLMVQLAQRARLTQVQ 908



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 117/270 (43%), Gaps = 36/270 (13%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G    T + T LI  L +   + EA   F  M + +  P+   YNV+I   CR GN  
Sbjct: 498 GKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTT 557

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-------------------------- 255
           +A  LL++M   G    PD YTY  LI+  C  G                          
Sbjct: 558 RAFELLDEMIKKGL--SPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTA 615

Query: 256 -MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL-ELFDDM 313
            +Q  C++    RI EA    + M+ +G   D+V+Y  LI G     + +R L EL  +M
Sbjct: 616 LLQGFCKEG---RIKEALVARQEMVGRGLQMDLVSYAVLISGALN--QNDRILFELLREM 670

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
           + KG  P+ V Y   I  +     + KA E    M    + VP S +YT +++ L +AG 
Sbjct: 671 HGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGY-VPNSVTYTALVNGLFKAGY 729

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           V EA+     ++ G ++P   TY    D L
Sbjct: 730 VNEAKLLFKRMLVGEAIPNHITYGCFLDHL 759



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 112/255 (43%), Gaps = 19/255 (7%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           A   N + L++ L++M   G G        T LI    + G + +A   +Y M      P
Sbjct: 655 ALNQNDRILFELLREM--HGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVP 712

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           +   Y  ++N L + G  N+A+ L ++M L G   P  + TY   +    K G       
Sbjct: 713 NSVTYTALVNGLFKAGYVNEAKLLFKRM-LVGEAIPNHI-TYGCFLDHLTKEG------- 763

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                +  A  L   ML +G   + V YN LI G C+  + + A +L D M   G +P+ 
Sbjct: 764 ----NMENALQLHNAML-QGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDC 818

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           +TY++FI  Y     +D A++M   M  L  G+ P    +  +IHA C  G +  A    
Sbjct: 819 ITYSTFIYEYCKRGNVDAAMDMWECM--LQRGLKPDRVVFNFLIHACCLNGELDRALQLR 876

Query: 382 AELVDGGSVPREYTY 396
            +++  G  P + TY
Sbjct: 877 NDMMLRGLKPTQSTY 891



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 111/276 (40%), Gaps = 54/276 (19%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T ++ T LI    ++GLV +A   ++ M      P+   +  +I  LC++    +A  L 
Sbjct: 469 TVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLF 528

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M     +  P+  TY +LI  +C+ G  T            A  L   M+ KG  PD 
Sbjct: 529 DEM--VELKILPNEVTYNVLIEGHCREGNTT-----------RAFELLDEMIKKGLSPDT 575

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI----- 342
             Y  LI G C T R+  A E  +D++ K    + + Y + ++ +     I +A+     
Sbjct: 576 YTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQE 635

Query: 343 -----------------------------EMMRKMQNLNHG---VPTSSSYTPIIHALCE 370
                                        E++R+M    HG    P +  YT +I    +
Sbjct: 636 MVGRGLQMDLVSYAVLISGALNQNDRILFELLREM----HGKGMQPDNVIYTILIDGFIK 691

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           +G + +A +F   ++  G VP   TY  + + L  A
Sbjct: 692 SGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKA 727



 Score = 45.8 bits (107), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           +R+ +   +  LM   G +P+V   + L++   +  +  + LELFD +   G  P+   Y
Sbjct: 169 KRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIY 228

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              ++    + + +KA E++ + +  N    +  +Y   I+ LC++ RV EA +    L 
Sbjct: 229 TVVVKCLCELKDFNKAKEIINQAEG-NGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLG 287

Query: 386 DGGSVPREYTY 396
           + G      TY
Sbjct: 288 EKGLKADLVTY 298


>gi|218185204|gb|EEC67631.1| hypothetical protein OsI_35025 [Oryza sativa Indica Group]
          Length = 800

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 109/242 (45%), Gaps = 18/242 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L++ L  EG V E L          C P V  YNV+I+  CR G+  +   LL +M
Sbjct: 416 STCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEM 475

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E  GF   P + TY  LI+   K G            + +   LF  M  +G  P+V  Y
Sbjct: 476 EAKGFL--PTLVTYGSLINCLGKKG-----------DLEKIGSLFLEMRKRGLSPNVQIY 522

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-- 348
           N +ID  CK +   +A+ +   M   GC P+ +T+N+ I        + KA   +R+   
Sbjct: 523 NSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIR 582

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           + LN   P   SYTP+IH  C  G ++ A D L E++  G  P   T+  +   L  A +
Sbjct: 583 RELN---PNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGK 639

Query: 409 PS 410
            S
Sbjct: 640 VS 641



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 105/252 (41%), Gaps = 17/252 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVI 211
           D L+ MS  G     T + +  L+    + G++ +A     R++ Q+   P+V   N ++
Sbjct: 329 DTLQSMSLAGAAP--TRACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLL 386

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             L     ++ AR L ++M   G     D Y+  +L+   C  G           R+ E 
Sbjct: 387 KLLVEQRRWDDARKLYDEML--GEDSGADNYSTCVLVRGLCLEG-----------RVEEG 433

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             L       G +P VV YN LIDG C+   + R L L  +M  KG +P  VTY S I  
Sbjct: 434 LKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINC 493

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                +++K   +  +M+      P    Y  +I ALC+     +A   L ++   G  P
Sbjct: 494 LGKKGDLEKIGSLFLEMRKRGLS-PNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDP 552

Query: 392 REYTYKLVCDAL 403
              T+  +   L
Sbjct: 553 DIITFNTLITGL 564



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D L +M  RG+   V T     LI  L   G V+EAL    +M + +  PDV  YNV+I+
Sbjct: 610 DLLMEMMGRGHTPDVVT--FGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLIS 667

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+      A+ +LE+M     +  PD + Y  LI  + +              + +A 
Sbjct: 668 GLCKKHMLPAAKNILEEMLEKNVQ--PDEFVYATLIDGFIR-----------SENLGDAR 714

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
            +F  M  KG  PD+V+ N +I G C+   +  A+    +M K+
Sbjct: 715 KIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKQ 758



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQM-ELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           PDV  +  +I+ L   G  ++A  + E+M E   F   PDV  Y +LIS  CK  M    
Sbjct: 622 PDVVTFGALIHGLVVAGKVSEALIVREKMTERQVF---PDVNIYNVLISGLCKKHM---- 674

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  +  A ++   ML K   PD   Y  LIDG  ++  +  A ++F+ M  KG  P
Sbjct: 675 -------LPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRP 727

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           + V+ N+ I+ Y     + +AI  M  M+
Sbjct: 728 DIVSCNAMIKGYCQFGMMSEAILCMSNMR 756


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 14/217 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G +NE       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGL--VPNSV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           ++T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 SFTTLIDGHCKDG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L ++M+ KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +I  LC+ GR ++A   L E++  G  P   TY ++
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++ C+ G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFCKEGEIRLAQSVFDAITKWGLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + N  FRL   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M   G +P
Sbjct: 186 ------DLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N V++ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 240 NSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKNGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 297 DLINEMSMKGLKPDKITYTTLIDG 320



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG +  + S T LI    ++G V+ A+  + +
Sbjct: 217 CKE-----SKLDDANELFDEMLD-----NGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+ +M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLK--PDKITYTTLIDGSCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    ++M++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQ 408



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 40/247 (16%)

Query: 188 ALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
            L ++  M  F C   +   A  ++   + R G  + +      +E  G +   D+Y ++
Sbjct: 12  TLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQ-RSDIYVFS 70

Query: 246 ILISSYCKYGMQTGCRKAIR-----------------RRIWEANHLFRLMLFK------- 281
            LI++Y + G     R AI                  R++ E  HL +L  FK       
Sbjct: 71  GLITAYLESGF---LRDAIECYRLTKEHKFRVPFDTCRKVLE--HLMKLKYFKLVWGFYE 125

Query: 282 -----GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
                G+   +  +N L+   CK   I  A  +FD + K G  P+ V++N+ +  Y  + 
Sbjct: 126 ESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLG 185

Query: 337 EIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
           ++++   +   MQ    GV P   +Y+ +I+ LC+  ++ +A +   E++D G VP   +
Sbjct: 186 DLNEGFRLKNAMQ--ASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVS 243

Query: 396 YKLVCDA 402
           +  + D 
Sbjct: 244 FTTLIDG 250


>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g04760, chloroplastic-like [Glycine max]
          Length = 531

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 133/299 (44%), Gaps = 50/299 (16%)

Query: 140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           I   R   V   ++ +  +S +G    V T ++  L++ L  +G           M    
Sbjct: 201 IXMCREGYVDRAFEVISSISSKGYALDVITYNI--LLRSLXNQGKWEAGFELMSDMVAKG 258

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C  +V  Y+V+I++LCR G   +   LL+ M+  G    PD Y Y  LI+  CK G    
Sbjct: 259 CEANVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLE--PDGYCYDPLIAVLCKEG---- 312

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                  R+  A  +  +M+  G VPD+V YN ++   CK  R + AL +F+ + + GC 
Sbjct: 313 -------RVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCS 365

Query: 320 PNRVTYNSF----------------------------IRYYSVVN------EIDKAIEMM 345
           PN  +YN+                             I Y S+++       +D+AIE++
Sbjct: 366 PNASSYNTVFSALGSSGHKVRALGMILEMLDXVDPDVIAYNSLISCLCRDGMVDEAIELL 425

Query: 346 RKMQ-NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             M+   +   P+  SY  ++  LC  GRV +A + LA +VD G +P E TY  + + +
Sbjct: 426 VDMEMESSECKPSVVSYNIVLLGLCRVGRVSDATEVLAAMVDKGCLPNETTYTFLIEGI 484



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 34/242 (14%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +  A     RMK     PD+  YN++I +LC  G  + A     Q+    F   P V TY
Sbjct: 105 IPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFN--PTVVTY 162

Query: 245 TILISSYCKYGMQTGCRKAIR--RRIWEAN------------------------HLFRLM 278
           TILI +     +Q G  +AI+    ++E N                         +   +
Sbjct: 163 TILIEATL---LQGGIDEAIKLLDEMFEINLQPDVFPYNSIIXMCREGYVDRAFEVISSI 219

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
             KG+  DV+ YN L+       + E   EL  DM  KGC  N VTY+  I       ++
Sbjct: 220 SSKGYALDVITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKV 279

Query: 339 DKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           ++ + +++ M+    G+ P    Y P+I  LC+ GRV  A + L  ++  G VP    Y 
Sbjct: 280 EEGVGLLKDMK--KKGLEPDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYN 337

Query: 398 LV 399
            +
Sbjct: 338 TI 339



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 18/170 (10%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTY 244
           +EAL+ F ++ +  C P+  +YN V +AL   G+  +A   +LE ++       PDV  Y
Sbjct: 350 DEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMILEMLD----XVDPDVIAY 405

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV--PDVVAYNCLIDGCCKTYR 302
             LIS  C+ GM           + EA  L   M  +     P VV+YN ++ G C+  R
Sbjct: 406 NSLISCLCRDGM-----------VDEAIELLVDMEMESSECKPSVVSYNIVLLGLCRVGR 454

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +  A E+   M  KGC+PN  TY   I        ++ A ++   + N++
Sbjct: 455 VSDATEVLAAMVDKGCLPNETTYTFLIEGIGFGGWLNDARDLATTLVNMD 504



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 15/178 (8%)

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           +L++M+  GF   PD+ TY ILI S C  GM       +   +   N L +    + F P
Sbjct: 111 VLDRMKNKGFS--PDIVTYNILIGSLCSRGM-------LHAALEFKNQLLK----ENFNP 157

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
            VV Y  LI+       I+ A++L D+M +    P+   YNS I        +D+A E++
Sbjct: 158 TVVTYTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSIIXMCR-EGYVDRAFEVI 216

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             + +  + +    +Y  ++ +L   G+     + ++++V  G      TY ++  +L
Sbjct: 217 SSISSKGYALDV-ITYNILLRSLXNQGKWEAGFELMSDMVAKGCEANVVTYSVLISSL 273



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 2/138 (1%)

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             I  A  +   M  KGF PD+V YN LI   C    +  ALE  + + K+   P  VTY
Sbjct: 103 ESIPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFNPTVVTY 162

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              I    +   ID+AI+++ +M  +N   P    Y  II  +C  G V  A + ++ + 
Sbjct: 163 TILIEATLLQGGIDEAIKLLDEMFEINLQ-PDVFPYNSII-XMCREGYVDRAFEVISSIS 220

Query: 386 DGGSVPREYTYKLVCDAL 403
             G      TY ++  +L
Sbjct: 221 SKGYALDVITYNILLRSL 238



 Score = 38.5 bits (88), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 5/102 (4%)

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPT 357
           T  I  A ++ D M  KG  P+ VTYN  I        +  A+E   ++  +N N   PT
Sbjct: 102 TESIPHAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLHAALEFKNQLLKENFN---PT 158

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             +YT +I A    G + EA   L E+ +    P  + Y  +
Sbjct: 159 VVTYTILIEATLLQGGIDEAIKLLDEMFEINLQPDVFPYNSI 200


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 145/313 (46%), Gaps = 34/313 (10%)

Query: 149 KGLWDF----LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           +G W++    + DM  +G      T S   LI  L  +G ++EA      MK+    PD 
Sbjct: 299 EGKWEYGEKLMSDMLVKGCEPNPITYST--LITALCRDGKIDEAKNVLKVMKEKALAPDG 356

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           Y+Y+ +I+ALCR G  + A   L+ M   G    PD+ +Y  +++S CK G         
Sbjct: 357 YSYDPLISALCREGKVDLAIEFLDDMISGGHL--PDILSYNSILASLCKNGNAD------ 408

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
                EA ++F  +   G  P+  +YN L      +    RAL +  +M   G  P+ +T
Sbjct: 409 -----EALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEIT 463

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YNS I        +D+AIE++  M       PT  SY  ++  LC+  R+++A + LA +
Sbjct: 464 YNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAM 523

Query: 385 VDGGSVPREYTYKLVCDAL-------NAAEEPSLLDDGLRKRIRDGI-EYRFRQVMKVKP 436
           V+ G +P E TY L+   +       +A E  +LL +       D I E  F++  K+ P
Sbjct: 524 VNEGCLPNETTYTLLIQGIGFAGWRYDAMELANLLVN------MDAISEDSFKRFQKIFP 577

Query: 437 IMK-HKELLKCGE 448
           +   HKEL    E
Sbjct: 578 VFDAHKELALSSE 590



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 121/262 (46%), Gaps = 16/262 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F + + V      L  M +RG    V T ++  LI      G ++ AL    ++ +  C+
Sbjct: 156 FCKADRVDHASKVLDRMKKRGFEPDVVTYNI--LIGNFCGRGRLDLALRVMDQLLKDNCK 213

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P V  Y ++I A    G  ++A  LL++M   G R  PD YTY ++++  CK GM     
Sbjct: 214 PTVITYTILIEATITQGGIDEAMKLLDEMLSRGLR--PDRYTYNVVVNGMCKEGM----- 266

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 +  A      +   G V  V  YN L+       + E   +L  DM  KGC PN
Sbjct: 267 ------LDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPN 320

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            +TY++ I       +ID+A  +++ M+      P   SY P+I ALC  G+V  A +FL
Sbjct: 321 PITYSTLITALCRDGKIDEAKNVLKVMKE-KALAPDGYSYDPLISALCREGKVDLAIEFL 379

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            +++ GG +P   +Y  +  +L
Sbjct: 380 DDMISGGHLPDILSYNSILASL 401



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 115/253 (45%), Gaps = 27/253 (10%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LI+    +G ++EA+     M     RPD Y YNVV+N +C+ G  ++A   L
Sbjct: 215 TVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFL 274

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYG------------MQTGCR----------KAIR 265
            ++   G  C   V TY IL+      G            +  GC            A+ 
Sbjct: 275 SRISKNG--CVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALC 332

Query: 266 R--RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
           R  +I EA ++ ++M  K   PD  +Y+ LI   C+  +++ A+E  DDM   G +P+ +
Sbjct: 333 RDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDIL 392

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           +YNS +         D+A+ +  K+  +    P + SY  +  AL  +G  + A   + E
Sbjct: 393 SYNSILASLCKNGNADEALNIFEKLGEVGCP-PNAGSYNTLFGALWSSGDKIRALGMILE 451

Query: 384 LVDGGSVPREYTY 396
           ++  G  P E TY
Sbjct: 452 MLSNGIDPDEITY 464



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 18/224 (8%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           +E+L     M     +PDV     +I     +    KA  ++E +E  G    PDV+ Y 
Sbjct: 94  DESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHG---KPDVFAYN 150

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            +IS +CK             R+  A+ +   M  +GF PDVV YN LI   C   R++ 
Sbjct: 151 AVISGFCK-----------ADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDL 199

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPI 364
           AL + D + K  C P  +TY   I        ID+A++++ +M  L+ G+ P   +Y  +
Sbjct: 200 ALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEM--LSRGLRPDRYTYNVV 257

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC-DALNAAE 407
           ++ +C+ G +  A +FL+ +   G V    TY ++  D LN  +
Sbjct: 258 VNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGK 301



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 35/182 (19%)

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV--------------------------- 288
           M+T  R     +  E+ +  + M+ +G+ PDV+                           
Sbjct: 81  MKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEK 140

Query: 289 -------AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
                  AYN +I G CK  R++ A ++ D M K+G  P+ VTYN  I  +     +D A
Sbjct: 141 HGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLA 200

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           + +M ++   N   PT  +YT +I A    G + EA   L E++  G  P  YTY +V +
Sbjct: 201 LRVMDQLLKDNCK-PTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVN 259

Query: 402 AL 403
            +
Sbjct: 260 GM 261


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 119/286 (41%), Gaps = 63/286 (22%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G  +T    T LI    + G  + A     RM    C PD Y Y+V+++ALC+    N+A
Sbjct: 479 GVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEA 538

Query: 224 RFLLEQMELPGFRCP---------------------------------PDVYTYTILISS 250
             +L+QM L G +C                                  P   TYT+ I+S
Sbjct: 539 LPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINS 598

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           YCK G           R+ +A  L   M  +G  PDVV YN LIDGC     I+RA    
Sbjct: 599 YCKEG-----------RLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTL 647

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVN----------------EIDKAIEMMRKMQNLNHG 354
             M    C PN  TY   +++    N                E+D   +++ +M  + HG
Sbjct: 648 KRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERM--VKHG 705

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           + PT ++Y+ +I   C+AGR+ EA   L  +   G  P E  Y L+
Sbjct: 706 LNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLL 751



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 119/255 (46%), Gaps = 15/255 (5%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S T LI+ L +   V +AL  F  MK+  C P+V A+  +I+ LC+ G    AR L + M
Sbjct: 140 SYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 199

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P V TY  +I  Y K G           R+ +A  +  LM   G  PD   Y
Sbjct: 200 PQNGV--VPSVMTYNAMIVGYSKLG-----------RMNDALKIKELMEKNGCHPDDWTY 246

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI G C   + E A EL ++  K+G  P  VT+ + I  Y +  + D A+ M  KM +
Sbjct: 247 NTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMS 305

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
               +     +  +I++L +  R+ EA++ L E+   G VP   TY  + D    + +  
Sbjct: 306 SKCKLDLQV-FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVD 364

Query: 411 LLDDGLRKRIRDGIE 425
           +  + L+   RDG +
Sbjct: 365 IALEVLKMMERDGCQ 379



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 122/257 (47%), Gaps = 18/257 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G L  T +   +IK   +EG +  A   F  + +    P+ +  N ++   CR G   K
Sbjct: 62  DGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRK 121

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A +L   M L G  C  + Y+YTILI   C         K +R+ +     LF +M   G
Sbjct: 122 ACWLFLMMPLMG--CQRNEYSYTILIQGLCD-------AKCVRKALV----LFLMMKRDG 168

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+V A+  LI G CK+ R+  A  LFD M + G +P+ +TYN+ I  YS +  ++ A+
Sbjct: 169 CSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDAL 228

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           ++   M+  N   P   +Y  +I+ LC+  +  EA + L   V  G  P   T+  + + 
Sbjct: 229 KIKELMEK-NGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLING 286

Query: 403 LNAAEEPSLLDDGLRKR 419
              AE+    DD LR +
Sbjct: 287 YCMAEK---FDDALRMK 300



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 125/270 (46%), Gaps = 32/270 (11%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG + +  +   +I    + G +N+AL     M++  C PD + YN +I  LC      +
Sbjct: 202 NGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKT-EE 260

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYC---KYG---------MQTGCRKAI------ 264
           A  LL      GF   P V T+T LI+ YC   K+          M + C+  +      
Sbjct: 261 AEELLNNAVKEGF--TPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 318

Query: 265 ------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                 + R+ EA  L   +   G VP+V+ Y  +IDG CK+ +++ ALE+   M + GC
Sbjct: 319 INSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGC 378

Query: 319 IPNRVTYNSFIRYYSVVNE--IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
            PN  TYNS +  Y +V +  + KA+ ++ KMQ  +  +P   +YT ++   C+      
Sbjct: 379 QPNAWTYNSLM--YGLVKDKKLHKAMALLTKMQK-DGIIPNVITYTTLLQGQCDEHDFDN 435

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           A      +   G  P E+ Y ++ DAL  A
Sbjct: 436 AFRLFEMMEQNGLKPDEHAYAVLTDALCKA 465



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 108/253 (42%), Gaps = 12/253 (4%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           +M+  G+    TT +V   I    +EG + +A     +M++    PDV  YN++I+    
Sbjct: 579 EMTSSGHKPSATTYTV--FINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGH 636

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE------ 270
           +G  ++A   L++M   G  C P+ +TY +L+    K G     R      +W       
Sbjct: 637 MGYIDRAFSTLKRM--VGASCEPNYWTYCLLLKHLLK-GNLAYVRSVDTSGMWNLIELDI 693

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
              L   M+  G  P V  Y+ LI G CK  R+E A  L D M  KG  PN   Y   I+
Sbjct: 694 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIK 753

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                   +KA+  +  M       P   SY  ++  LC  G   + +    +L++ G  
Sbjct: 754 CCCDTKFFEKALSFVSIMSECGFQ-PQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYN 812

Query: 391 PREYTYKLVCDAL 403
             E  +K++ D L
Sbjct: 813 HDEVAWKILNDGL 825



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 52/253 (20%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A+A   +M++    P+V  Y  ++   C   +F+ A  L E ME  G +  PD + Y
Sbjct: 398 LHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLK--PDEHAY 455

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            +L  + CK G               A   +  ++ KG     V Y  LIDG  K    +
Sbjct: 456 AVLTDALCKAG--------------RAEEAYSFIVRKGVALTKVYYTTLIDGFSKAGNTD 501

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIR-----------------------------YYSVV 335
            A  L + M  +GC P+  TY+  +                              Y  ++
Sbjct: 502 FAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILI 561

Query: 336 NEI------DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
           +E+      D A  M  +M +  H  P++++YT  I++ C+ GR+ +A D + ++   G 
Sbjct: 562 DEMLREGKHDHAKRMYNEMTSSGHK-PSATTYTVFINSYCKEGRLEDAEDLILKMEREGV 620

Query: 390 VPREYTYKLVCDA 402
            P   TY ++ D 
Sbjct: 621 APDVVTYNILIDG 633


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 135/293 (46%), Gaps = 47/293 (16%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +  +K+M R+G   +   S+ T +I  L +   V++A   F  MK+    PDVY Y ++I
Sbjct: 437 FQIVKEMMRKGF--VPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILI 494

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY-------------------- 251
           ++ C+ G   +A+   ++M   G  C P+V TYT L+ +Y                    
Sbjct: 495 DSFCKAGLIEQAQSWFDEMRSAG--CSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDA 552

Query: 252 ---------------CKYG-MQTGCRKAIRRRIWEANHLFRLMLFKG-----FVPDVVAY 290
                          CK G +Q  C +   + I  ++++     F+G       P+VV Y
Sbjct: 553 CYPNAITYSALIDGLCKAGEIQKAC-EVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTY 611

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             L++G CK  ++  A +L D M   GC PN++ Y++ +  +  V EID A E+  +M  
Sbjct: 612 GALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTK 671

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             + +P+  +YT +I  + + GR+  A   L++++     P   TY  + D L
Sbjct: 672 CGY-LPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGL 723



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 135/321 (42%), Gaps = 39/321 (12%)

Query: 59  FFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVL--VLGPAAYRDPQKVTL-----G 111
           +F   RS G        T L    LK +    AN++   ++G A Y  P  +T      G
Sbjct: 509 WFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACY--PNAITYSALIDG 566

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           L KA E              +  C+    +    +N++  + F    +   +  +VT  +
Sbjct: 567 LCKAGEI-------------QKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGA 613

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              L+  L +   V++A      M    C P+   Y+ +++  C+VG  + A+ +  +M 
Sbjct: 614 ---LVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMT 670

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
             G+   P V+TYT LI    K G           R+  A  +   ML     P+VV Y 
Sbjct: 671 KCGYL--PSVHTYTSLIDRMFKDG-----------RLDLAMKVLSQMLKDSCNPNVVTYT 717

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            ++DG CKT   E+AL L   M KKGC PN VTY + I       ++D  +E+  +M+  
Sbjct: 718 AMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKT- 776

Query: 352 NHGVPTSSSYTPIIHALCEAG 372
               P   +Y  +I+  C AG
Sbjct: 777 KGCAPNYVTYRILINHCCAAG 797



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 14/172 (8%)

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LC VG F KA  ++++M   GF   PD  TYT +I+  C+            +R+ +A  
Sbjct: 427 LCGVGKFEKAFQIVKEMMRKGF--VPDASTYTKVITFLCQ-----------AKRVDKAFL 473

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF+ M   G  PDV  Y  LID  CK   IE+A   FD+M   GC PN VTY + +  Y 
Sbjct: 474 LFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYL 533

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              ++ +A ++  +M   +   P + +Y+ +I  LC+AG + +A +  A+L+
Sbjct: 534 KSKQLYQANDIFHRMVG-DACYPNAITYSALIDGLCKAGEIQKACEVYAKLI 584



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 125/332 (37%), Gaps = 69/332 (20%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK----- 196
           FA+    +G W    D+  R + +L  T   T +I  L E  L NEA++  +RM+     
Sbjct: 245 FAQALCKEGRWGDALDLLEREDFKL-DTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYI 303

Query: 197 ----QFR--------------------------CRPDVYAYNVVINALCRVGNFNKARFL 226
                +R                          C P    +N +++  C   ++  A  L
Sbjct: 304 PNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKL 363

Query: 227 LEQMELPGFRCPPDVYTYTILISSYC---------------KYGMQTGCRKAIRRRIWEA 271
             +M   G  CPP    Y I I S C               K   +      +  +I  A
Sbjct: 364 FNRMNTCG--CPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTA 421

Query: 272 N---------------HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
           N                + + M+ KGFVPD   Y  +I   C+  R+++A  LF +M K 
Sbjct: 422 NFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKV 481

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           G  P+  TY   I  +     I++A     +M++     P   +YT ++HA  ++ ++ +
Sbjct: 482 GVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCS-PNVVTYTALLHAYLKSKQLYQ 540

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           A D    +V     P   TY  + D L  A E
Sbjct: 541 ANDIFHRMVGDACYPNAITYSALIDGLCKAGE 572



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 121/307 (39%), Gaps = 60/307 (19%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V A    V+  +   K+MS   +G  +  S+V    + L +EG   +AL    R + F+ 
Sbjct: 213 VLASAGQVEMAFRVQKEMS--ASGFCMDRSTVGSFAQALCKEGRWGDALDLLER-EDFKL 269

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
             D      +I+ L     FN+A   L +M    +   P+V TY  L++ + K      C
Sbjct: 270 --DTVLCTQMISGLMEASLFNEAMSFLHRMRCNSY--IPNVVTYRTLLTGFLKKKQLGWC 325

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
           ++ I            +M+ +G  P    +N L+   C       A +LF+ MN  GC P
Sbjct: 326 KRIIN-----------MMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPP 374

Query: 321 NRVTYNSFI-----------------------------------------RYYSVVNEID 339
             V YN FI                                         R    V + +
Sbjct: 375 GYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFE 434

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           KA +++++M      VP +S+YT +I  LC+A RV +A     E+   G  P  YTY ++
Sbjct: 435 KAFQIVKEMMRKGF-VPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTIL 493

Query: 400 CDALNAA 406
            D+   A
Sbjct: 494 IDSFCKA 500



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 100/236 (42%), Gaps = 22/236 (9%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G   K L + L  M ++G    V T   T LI  LG+ G V+  L  F +MK   C P+ 
Sbjct: 727 GETEKAL-NLLSLMEKKGCSPNVVT--YTALIDGLGKAGKVDAGLELFMQMKTKGCAPNY 783

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             Y ++IN  C  G  + A  LL++M+   +  P  +  Y   +  + K           
Sbjct: 784 VTYRILINHCCAAGLLDDAHLLLDEMKQTHW--PKYLQGYRTTVQGFSK----------- 830

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             R   +  L   M      P    Y  LID   K  R+E ALEL  +M +     N  +
Sbjct: 831 --RFLASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMAS 888

Query: 325 ---YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
              + S I+   + +++++A+ +  +M+     VP  S++  ++  L E  +  EA
Sbjct: 889 KDMHTSLIQALCLSSQVEEAVALYSEMRRRGI-VPDLSAFVCLVKGLIERNKWNEA 943


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 14/217 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY ++V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  ++R ML +  +PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++  +L D+M+ KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD-DXAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +I  LC+ GR ++A   L E++  G  P   TY ++
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 101/201 (50%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHNFCKEGEIRLAQSVFDSITKWGLR--PSVVSFNTLMNGYIKIG-------- 185

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L  +M   G  PDV  ++ LI+G CK  +++ A ELFD+M   G +PN V
Sbjct: 186 ---DLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGV 242

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ R+M  Q+L   +P   +Y  +I+ LC+ G + +  D +
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYRQMLSQSL---LPDLITYNTLIYGLCKKGDLKQXXDLI 299

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+   G  P + TY  + D 
Sbjct: 300 DEMSMKGLKPDKITYTTLIDG 320



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + B     NG +    + T LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANELFDEMLB-----NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +   L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLK--PDKITYTTLIDGNCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D  AY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN--IRL--------DDXAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 40/215 (18%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           R D+Y ++ +I A    G    A       +   FR P D                   C
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDT------------------C 104

Query: 261 RKAIRRRIWEANHLFRLMLFK------------GFVPDVVAYNCLIDGCCKTYRIERALE 308
           RK I        HL +L  FK            G+   +  +N L+   CK   I  A  
Sbjct: 105 RKVIE-------HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKEGEIRLAQS 157

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
           +FD + K G  P+ V++N+ +  Y  + ++D+   +   MQ    GV P   +++ +I+ 
Sbjct: 158 VFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ--ASGVQPDVYTHSVLING 215

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           LC+  ++ +A +   E++B G VP   T+  + D 
Sbjct: 216 LCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDG 250


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 14/242 (5%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+G L    +   LI  L +   +  A      M  F   P+++ YN +I+  C+ GN +
Sbjct: 291 GDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLS 350

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A  L  ++E       PDV+TY+ILI   C              R+ EA+ L + M  K
Sbjct: 351 EALSLHSEIE--KHEILPDVFTYSILIKGLCGVD-----------RMEEADGLLQEMKKK 397

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           GF+P+ V YN LIDG CK   +E+A+E+   M +KG  PN +T+++ I  Y    +++ A
Sbjct: 398 GFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAA 457

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           + +  +M  +   +P   +YT +I    + G   EA     E+ + G  P  +T   + D
Sbjct: 458 MGLYTEMV-IKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLID 516

Query: 402 AL 403
            L
Sbjct: 517 GL 518



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 112/242 (46%), Gaps = 23/242 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    E GLV EAL  +Y+M      P + A N+V++ L + G F+    +   M   G
Sbjct: 132 LIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARG 188

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V TY  LI   C+ G              +A  LF  M+ K   P VV Y  LI
Sbjct: 189 --ASPNVVTYGTLIDGCCRQG-----------DFLKAFRLFDEMIEKKIFPTVVIYTILI 235

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   RI  A  +F  M   G +PN  TYN+ +  Y  +  + KA+E+ ++M  L  G
Sbjct: 236 RGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEM--LGDG 293

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEP 409
            +P   ++  +I  LC+   ++ AR FL ++   G VP  + Y  +    C A N +E  
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEAL 353

Query: 410 SL 411
           SL
Sbjct: 354 SL 355



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 118/266 (44%), Gaps = 51/266 (19%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+ L  E  ++EA + F  M+     P++Y YN +++  C++ +  KA  L ++M  
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG 291

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P+V T+ ILI   CK       RK           L  +  F G VP++  YNC
Sbjct: 292 DGLL--PNVVTFGILIDGLCKTDEMVSARK----------FLIDMASF-GVVPNIFVYNC 338

Query: 293 LIDGCCK------------------------TY-----------RIERALELFDDMNKKG 317
           LIDG CK                        TY           R+E A  L  +M KKG
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKG 398

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLE 376
            +PN VTYN+ I  Y     ++KAIE+  +M     G+ P   +++ +I   C+AG++  
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMT--EKGIEPNIITFSTLIDGYCKAGKMEA 456

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDA 402
           A     E+V  G +P    Y  + D 
Sbjct: 457 AMGLYTEMVIKGLLPDVVAYTALIDG 482



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 89/195 (45%), Gaps = 26/195 (13%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CLI    + G ++EAL+    +++    PDV+ Y+++I  LC V    +A  LL++M+  
Sbjct: 338 CLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKK 397

Query: 234 GFRCPPDVYTYTILISSYCKYG-MQTG---CRKAIRR--------------------RIW 269
           GF   P+  TY  LI  YCK G M+     C +   +                    ++ 
Sbjct: 398 GFL--PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKME 455

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            A  L+  M+ KG +PDVVAY  LIDG  K    + A  L  +M + G  PN  T +  I
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515

Query: 330 RYYSVVNEIDKAIEM 344
                   I  AI++
Sbjct: 516 DGLCKDGRISDAIKL 530


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 161/371 (43%), Gaps = 42/371 (11%)

Query: 61  QSPRSIGRQTGFRHRTPLRQ-----RILKKE--AYNIANNVLVLGPAAYRDPQKVTLGL- 112
           Q P  I    G +  T  ++     R++  E  ++ + +++  L P+  +     TL L 
Sbjct: 139 QQPIKITPNEGLKAATKTKRSQAMARLINTEPWSHELQSSLAELAPSLSKTTVLQTLQLI 198

Query: 113 ---NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNG----- 164
               KA  F+ WVE    F HNE +   M  +  R  N+    +F+  + ++  G     
Sbjct: 199 RTPAKALHFFRWVEAK-GFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGAESIK 257

Query: 165 ------ELVTTSSVT---CLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINAL 214
                 E+  + SV     L+ ++ + G  + A   F  M   +   PD Y +N++I   
Sbjct: 258 VFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGF 317

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           C     ++  +  ++M    F+C PDV TY  L+   C+ G           ++  A+++
Sbjct: 318 CMNSMVDEGFWFFKEMSR--FKCDPDVVTYNTLVDGLCRAG-----------KVKIAHNV 364

Query: 275 FRLMLFKG--FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            + M+ K     P+VV Y  LI G C    +  AL L  +M  +G  PN++TYN+ I+  
Sbjct: 365 VKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGL 424

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               ++DK  E++  M      +P + +   +I A C  G++ EA     ++ +    P 
Sbjct: 425 CEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPD 484

Query: 393 EYTYKLVCDAL 403
             TY ++  +L
Sbjct: 485 SATYSVLVRSL 495



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 19/218 (8%)

Query: 162 GNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           G+G  +  T ++  LIK     G + EA + F +M + R +PD   Y+V++ +LC+ G+F
Sbjct: 442 GDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDF 501

Query: 221 NKARFLLEQME-----LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
            +A    +++      L    C P V  Y  +    C  G           +  +A  +F
Sbjct: 502 RRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNG-----------KTKKAERVF 550

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
           R ++ +G   D  +Y  LI G C+    E   +L   M ++  +P+  TY   I      
Sbjct: 551 RQLMKRG-TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKK 609

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
            +   A + + KM   +H +PT++ +  I+ AL E  R
Sbjct: 610 GDPVLAHKSLEKMLKSSH-LPTTAIFHSILAALVEKER 646


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 110/217 (50%), Gaps = 14/217 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L  +M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P++VTY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +I  LC+ GR ++A   L E++  G  P   TY ++
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 101/201 (50%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G    A+ + + +   G R  P   ++  L++ Y + G        
Sbjct: 136 LYFFNILMHRFCKEGEIKLAQSVFDAITKWGLR--PTAVSFNTLMNGYIRLG-------- 185

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   M   G  PDV  Y+ LI+G CK  +++ A ELF++M   G +PN V
Sbjct: 186 ---DLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGV 242

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+D +
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQDLI 299

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+   G  P + TY  + D 
Sbjct: 300 DEMSMKGLKPDKVTYTTLIDG 320



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 15/188 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG +    + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFK 281
           A+ L+++M + G +  PD  TYT LI   CK G ++T      R+R+ + N   RL    
Sbjct: 295 AQDLIDEMSMKGLK--PDKVTYTTLIDGSCKEGDLETAFE--YRKRMIKEN--IRL---- 344

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
               D VAY  LI G C+  R   A ++  +M   G  P   TY   I  +    ++   
Sbjct: 345 ----DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 342 IEMMRKMQ 349
            ++M++MQ
Sbjct: 401 SKLMKEMQ 408



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 40/247 (16%)

Query: 188 ALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
            L ++  M  F C   +   A  ++   + R G  + +      +E  G +   D+Y ++
Sbjct: 12  TLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGQGSASAVFAAILETKGTQ-RSDIYVFS 70

Query: 246 ILISSYCKYGMQTGCRKAIR-----------------RRIWEANHLFRLMLFK---GFVP 285
            LI++Y + G     R AI                  R++ E  HL +L  FK   GF  
Sbjct: 71  GLITAYLESGF---LRDAIECYRLTKEHKFRVPFDTCRKVLE--HLMKLKYFKLVWGFYE 125

Query: 286 DVVA---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
           D +          +N L+   CK   I+ A  +FD + K G  P  V++N+ +  Y  + 
Sbjct: 126 DSLECGYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLG 185

Query: 337 EIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
           ++D+   +   MQ    GV P   +Y+ +I+ LC+  ++  A +   E++D G VP   T
Sbjct: 186 DLDEGFRLKNAMQ--ASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVT 243

Query: 396 YKLVCDA 402
           +  + D 
Sbjct: 244 FTTLIDG 250


>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Brachypodium distachyon]
          Length = 410

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 109/242 (45%), Gaps = 27/242 (11%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI      G   + LA F +M+     P++Y YN+++   CR G F +AR L E+M
Sbjct: 75  TFTALIHGYFIHGRREKGLALFEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEM 134

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG--------MQTGCRKAIR----------------R 266
              G     +V +Y  LI+  C+Y         ++   R+ IR                 
Sbjct: 135 PAKGI--TRNVVSYNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAG 192

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++  A H    M   G+ P  V YN LI G C+   + RA   F DM ++G  P +VTY 
Sbjct: 193 KMSNALHFSNQMRMAGYQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYT 252

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             I  ++  N++DKA EM   M+     V    +Y  ++HALC  G + +AR     + +
Sbjct: 253 ILIDAFARENDMDKAFEMFAGMEKAGLEVDV-RTYGVLVHALCMEGNMKDARKLFQSIGE 311

Query: 387 GG 388
            G
Sbjct: 312 KG 313



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 14/234 (5%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           ++ T L+      G V EA   F  M +    P+   +  +I+     G   K   L E+
Sbjct: 39  AACTALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGRREKGLALFEK 98

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M + G    P++YTY IL+  +C+ G               A  LF  M  KG   +VV+
Sbjct: 99  MRIGGI--EPNLYTYNILVGEWCRTG-----------EFERARLLFEEMPAKGITRNVVS 145

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN LI G C+  +++ A +L + M ++G  P+ VT+N  +  Y    ++  A+    +M+
Sbjct: 146 YNTLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMR 205

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              +  P++ +Y  +I   C A  ++ A    +++ + G  P + TY ++ DA 
Sbjct: 206 MAGY-QPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAF 258



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 113/267 (42%), Gaps = 18/267 (6%)

Query: 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           +K     L+ M R G    V T ++  L+   G+ G ++ AL    +M+    +P    Y
Sbjct: 159 MKDATQLLELMRREGIRPSVVTFNL--LVDGYGKAGKMSNALHFSNQMRMAGYQPSAVTY 216

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           N +I   CR  +  +A      M+  G    P   TYTILI ++ +              
Sbjct: 217 NALIAGFCRARDMIRANRAFSDMKERGL--APTKVTYTILIDAFAR-----------END 263

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + +A  +F  M   G   DV  Y  L+   C    ++ A +LF  + +KG     V Y+ 
Sbjct: 264 MDKAFEMFAGMEKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDM 323

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I  Y       KA++++ +M+     VP S+SY   I  LC  G+  EA   + ++V  
Sbjct: 324 LIYGYGREGSSYKAMKLIMEMRKKGF-VPNSASYGLTIRILCNDGKCSEAEALIDDMVRA 382

Query: 388 GSVPREYTYKLVCDALNAAEEPSLLDD 414
           G    E   +++ +A   A + S  DD
Sbjct: 383 GVQTSESVRQVLLNA--KARQGSPTDD 407



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 17/204 (8%)

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
           V +  L   G    A  LL +    G     DV   T L+  YC+ G            +
Sbjct: 7   VAVRRLSAAGEVRSALALLARGAKAG-DTTLDVAACTALVHGYCRSG-----------DV 54

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
            EA  +F +M   G  P+ V +  LI G     R E+ L LF+ M   G  PN  TYN  
Sbjct: 55  AEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGRREKGLALFEKMRIGGIEPNLYTYNIL 114

Query: 329 IRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           +  +    E ++A  +  +M  + +   V    SY  +I  LC   ++ +A   L  +  
Sbjct: 115 VGEWCRTGEFERARLLFEEMPAKGITRNVV---SYNTLIAGLCRYRKMKDATQLLELMRR 171

Query: 387 GGSVPREYTYKLVCDALNAAEEPS 410
            G  P   T+ L+ D    A + S
Sbjct: 172 EGIRPSVVTFNLLVDGYGKAGKMS 195


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 18/233 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + ++  L +EG V EA      M Q    PDV  Y  +++  C     ++A  + + M  
Sbjct: 279 STVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVR 338

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            GF   PDV +YT LI+ YCK             +I +A +LF  M  K ++PD   YN 
Sbjct: 339 KGF--APDVISYTTLINGYCKI-----------HKIDKAMYLFEEMCRKEWIPDTKTYNT 385

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ--N 350
           L+ G C   R++ A+ LF +M  +G +P+ VTY+  +        +++A+ +++ ++  N
Sbjct: 386 LMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASN 445

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           LN   P    Y  II  +C AG +  ARD  + L   G  P  +TY ++   L
Sbjct: 446 LN---PDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGL 495



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 133/303 (43%), Gaps = 82/303 (27%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           ++ T LI+ L  EG + EAL  F +M     +P+V  Y  +IN LC+VGN + A  LL  
Sbjct: 136 TTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRS 195

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG------- 282
           ME     C PDV  YT +I S CK            R++ EA +LF  M+ +G       
Sbjct: 196 MEQG--NCQPDVVIYTSIIDSLCK-----------DRQVTEAFNLFSQMVGQGISPDIFT 242

Query: 283 ----------------------------FVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
                                        +PDVV ++ ++D  CK  ++  A E+ D M 
Sbjct: 243 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI 302

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIE----MMRK--------MQNLNHG-------- 354
           ++G  P+ VTY + +  + + +E+D+A++    M+RK           L +G        
Sbjct: 303 QRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKID 362

Query: 355 --------------VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
                         +P + +Y  +++ LC  GR+ +A     E+V  G +P   TY ++ 
Sbjct: 363 KAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILL 422

Query: 401 DAL 403
           D+L
Sbjct: 423 DSL 425



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 16/216 (7%)

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           L+   +M  F   P+VY  N++IN+ C +     A  +L ++   G +  PD  T+T LI
Sbjct: 85  LSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQ--PDPTTFTTLI 142

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
              C  G           +I EA HLF  M+ +GF P+VV Y  LI+G CK      A+ 
Sbjct: 143 RGLCVEG-----------KIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIR 191

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
           L   M +  C P+ V Y S I       ++ +A  +  +M  +  G+ P   +YT ++HA
Sbjct: 192 LLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM--VGQGISPDIFTYTSLVHA 249

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           LC           L ++V+   +P    +  V DAL
Sbjct: 250 LCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDAL 285



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 14/218 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V  A +   ++ +   +PD   +  +I  LC  G   +A  L ++M   GF+  P+V TY
Sbjct: 116 VGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQ--PNVVTY 173

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI+  CK G  +    AIR        L R M      PDVV Y  +ID  CK  ++ 
Sbjct: 174 GTLINGLCKVGNTSA---AIR--------LLRSMEQGNCQPDVVIYTSIIDSLCKDRQVT 222

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  LF  M  +G  P+  TY S +     + E      ++ +M N +  +P    ++ +
Sbjct: 223 EAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVN-SKILPDVVIFSTV 281

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + ALC+ G+V EA + +  ++  G  P   TY  + D 
Sbjct: 282 VDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDG 319



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 16/217 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA+  F  M +    PDV +Y  +IN  C++   +KA +L E+M    +   PD  TY
Sbjct: 326 MDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW--IPDTKTY 383

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L+   C  G           R+ +A  LF  M+ +G +PD+V Y+ L+D  CK   +E
Sbjct: 384 NTLMYGLCHVG-----------RLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLE 432

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A+ L   +      P+   YN  I       E++ A ++   +   + G+ P+  +Y  
Sbjct: 433 EAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLS--SKGLHPSVWTYNI 490

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           +IH LC+ G + EA     E+      P   TY  + 
Sbjct: 491 MIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIA 527



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 14/204 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A+  F  M +    PD   YN ++  LC VG    A  L  +M   G    PD+ TY
Sbjct: 361 IDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQM--PDLVTY 418

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           +IL+ S CK            R + EA  L + +      PD+  YN +IDG C+   +E
Sbjct: 419 SILLDSLCK-----------NRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELE 467

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A +LF +++ KG  P+  TYN  I        +++A ++  +M   N   P   +Y  I
Sbjct: 468 AARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDG-NDCSPDGCTYNTI 526

Query: 365 IHALCEAGRVLEARDFLAELVDGG 388
                +    L A   L E++  G
Sbjct: 527 ARGFLQNNETLRAIQLLEEMLARG 550



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 16/205 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   L+  L   G + +A+A F+ M      PD+  Y++++++LC+  +  +A  LL+
Sbjct: 380 TKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLK 439

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            +E       PD+  Y I+I   C+ G     R            LF  +  KG  P V 
Sbjct: 440 AIEASNLN--PDIQVYNIIIDGMCRAGELEAARD-----------LFSNLSSKGLHPSVW 486

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN +I G CK   +  A +LF +M+   C P+  TYN+  R +   NE  +AI+++ +M
Sbjct: 487 TYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEM 546

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGR 373
             L  G    S +  ++  L E  R
Sbjct: 547 --LARGFSADSCFL-MLSVLSEDDR 568



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 20/187 (10%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
              +M  RG    + T S+  L+  L +   + EA+A    ++     PD+  YN++I+ 
Sbjct: 402 LFHEMVARGQMPDLVTYSI--LLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDG 459

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           +CR G    AR L   +   G    P V+TY I+I   CK G+             EAN 
Sbjct: 460 MCRAGELEAARDLFSNLSSKGLH--PSVWTYNIMIHGLCKRGLLN-----------EANK 506

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LF  M      PD   YN +  G  +     RA++L ++M  +G      + +S     S
Sbjct: 507 LFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARG-----FSADSCFLMLS 561

Query: 334 VVNEIDK 340
           V++E D+
Sbjct: 562 VLSEDDR 568


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 124/265 (46%), Gaps = 24/265 (9%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L T  + T L+  L   G+V EA+A F  M+   C PD + Y  +++ LC  G   +A
Sbjct: 137 GCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEA 196

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LLE+    GF   P++  Y  LI  YC  G              E  H  +  +F+G 
Sbjct: 197 EVLLEEAMSNGFE--PNIVVYNALIDGYCNAG--------------EMEHALK--VFEGM 238

Query: 284 -----VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
                 P+V  Y  LI G CK+ ++ERA+ LF  M + G  PN VTY + I+       +
Sbjct: 239 DGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHL 298

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
             A  ++  M+  N  VP   +++ +I ALC+  +V EA+ FL  LV  G    E  Y  
Sbjct: 299 QCAFRLLHLMET-NGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTS 357

Query: 399 VCDALNAAEEPSLLDDGLRKRIRDG 423
           + D L    +    D+ ++K I +G
Sbjct: 358 LIDGLCKTGKIDAADELMQKMISEG 382



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 103/222 (46%), Gaps = 16/222 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G +  AL  F  M   RC P+V  Y  +I+ LC+ G   +A  L  +M   G    P+V 
Sbjct: 226 GEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLE--PNVV 283

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TYT LI   C  G            +  A  L  LM   G VP+   ++ LID  CK  +
Sbjct: 284 TYTALIQGQCNEG-----------HLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREK 332

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSY 361
           +E A      + KKG   N V Y S I       +ID A E+M+KM  ++ G VP + SY
Sbjct: 333 VEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKM--ISEGFVPDAHSY 390

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + +I  LC   ++ +A   L ++++ G      TY ++ D L
Sbjct: 391 SSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 119/251 (47%), Gaps = 33/251 (13%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI  L + G V  A+  F RM +    P+V  Y  +I   C  G+   A  LL  ME 
Sbjct: 251 TELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMET 310

Query: 233 PGFRCPPDVYTYTILISSYCK--------YGMQTGCRKAIR----------------RRI 268
            G    P+ +T+++LI + CK          + +  +K ++                 +I
Sbjct: 311 NGLV--PNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKI 368

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
             A+ L + M+ +GFVPD  +Y+ LIDG C+  ++ +A  + +DM +KG   + VTY   
Sbjct: 369 DAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTII 428

Query: 329 IRYYSVVNEI--DKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           I    +V E+  +   ++  KM  +  G+ P   +YT  + + CE GR+ +A   + ++V
Sbjct: 429 ID--ELVREVGSEGPKKIFDKM--IATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMV 484

Query: 386 DGGSVPREYTY 396
           D G  P   TY
Sbjct: 485 DRGVFPNLVTY 495



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 19/241 (7%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G++  A   F  M    C    + Y  +++ L   G   +A  +   M      C PD +
Sbjct: 121 GMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADS--CAPDTH 178

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
            Y  ++   C+ G           R  EA  L    +  GF P++V YN LIDG C    
Sbjct: 179 VYATMVHGLCEAG-----------RTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGE 227

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           +E AL++F+ M+   C PN  TY   I       ++++A+ +  +M  +  G+ P   +Y
Sbjct: 228 MEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRM--VEAGLEPNVVTY 285

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLLDDGLRK 418
           T +I   C  G +  A   L  +   G VP ++T+ ++ DAL      EE  L    L K
Sbjct: 286 TALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVK 345

Query: 419 R 419
           +
Sbjct: 346 K 346



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 120/294 (40%), Gaps = 61/294 (20%)

Query: 154 FLKDMSRRGN--GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           FL  + ++G    E+V TS    LI  L + G ++ A     +M      PD ++Y+ +I
Sbjct: 339 FLGSLVKKGVKVNEVVYTS----LIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLI 394

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPP-------------------------------- 239
           + LCR    ++A  +LE M   G +  P                                
Sbjct: 395 DGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGIN 454

Query: 240 -DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
            D+ TYT+ + SYC+ G           R+ +A  +   M+ +G  P++V YN LI G  
Sbjct: 455 PDIVTYTVFVRSYCEEG-----------RMEDAESMIVQMVDRGVFPNLVTYNTLIRGYA 503

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM-----MRKMQNLNH 353
               + +A   F+ M  KG  PN  +Y   +R     +  D ++++     M+ +Q L  
Sbjct: 504 NLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLE 563

Query: 354 GV-----PTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
            +     P ++  Y+  I  LC   R+ EA+ F   + +    P E  Y  + D
Sbjct: 564 DITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIID 617



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 82/207 (39%), Gaps = 19/207 (9%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P +   N ++ AL R   F     L  +M     R      TYT LI++YC  G      
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPARNLR------TYTTLINAYCLAG------ 86

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I  A      +L  G  PD  AY   + G C+   +  A  +F  M  +GC+  
Sbjct: 87  -----DIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRT 141

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TY + +        + +A+ +   M+  +   P +  Y  ++H LCEAGR  EA   L
Sbjct: 142 AFTYTALLHGLLGAGMVREAMAVFVGMRA-DSCAPDTHVYATMVHGLCEAGRTEEAEVLL 200

Query: 382 AELVDGGSVPREYTYKLVCDAL-NAAE 407
            E +  G  P    Y  + D   NA E
Sbjct: 201 EEAMSNGFEPNIVVYNALIDGYCNAGE 227



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 93/250 (37%), Gaps = 34/250 (13%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR------------VGNFNK 222
           LI+     GLV++A +TF  M     +P+  +Y V++  + +            + +   
Sbjct: 498 LIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKD 557

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
            + LLE +         D+Y+    I   C+             R+ EA H F  M    
Sbjct: 558 LQVLLEDITERQLPLAADIYS--CFIRCLCRVD-----------RLEEAKHFFMGMQNAN 604

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P    Y  +ID CC+   +  AL L D M K G +P+  +Y   I           A 
Sbjct: 605 LTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAK 664

Query: 343 E----MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           E    ++ K  N +  V     +  +I+ L + G V E    L+ + + G  P      +
Sbjct: 665 EVFGDLLLKESNYDEIV-----WKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTINAM 719

Query: 399 VCDALNAAEE 408
           +   +    E
Sbjct: 720 ITGEITVTNE 729


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 115/256 (44%), Gaps = 47/256 (18%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-------------- 230
           VN+AL  F  M     RP+V  YN +I  LC  G ++ A  LL  M              
Sbjct: 272 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331

Query: 231 -------------------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
                              E+      PD++TY+ LI+ +C           +  R+ EA
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC-----------MHDRLDEA 380

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
            H+F LM+ K   P+VV YN LI G CK  R++  +ELF +M+++G + N VTY + I  
Sbjct: 381 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHG 440

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
           +    E D A  + ++M  ++ GV P   +Y+ ++  LC  G+V  A      L      
Sbjct: 441 FFQARECDNAQIVFKQM--VSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKME 498

Query: 391 PREYTYKLVCDALNAA 406
           P  YTY ++ + +  A
Sbjct: 499 PDIYTYNIMIEGMCKA 514



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 135/330 (40%), Gaps = 62/330 (18%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F  GN +      +  M   G      + +   LI  L      +EA+A   RM    C+
Sbjct: 161 FCHGNRISDAVSLVGQMVEMGYQP--DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQ 218

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMEL----PGF---------------------- 235
           PD+  Y +V+N LC+ G+ + A  LL++ME     PG                       
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNL 278

Query: 236 -------RCPPDVYTYTILISSYCKYGMQTGCRK----AIRRRI---------------- 268
                     P+V TY  LI   C YG  +   +     I R+I                
Sbjct: 279 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338

Query: 269 ----WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
                EA  L+  M+ +   PD+  Y+ LI+G C   R++ A  +F+ M  K C PN VT
Sbjct: 339 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 398

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YN+ I+ +     +D+ +E+ R+M      V  + +YT +IH   +A     A+    ++
Sbjct: 399 YNTLIKGFCKAKRVDEGMELFREMSQRGL-VGNTVTYTTLIHGFFQARECDNAQIVFKQM 457

Query: 385 VDGGSVPREYTYKLVCDAL--NAAEEPSLL 412
           V  G +P   TY ++ D L  N   E +L+
Sbjct: 458 VSDGVLPDIMTYSILLDGLCNNGKVETALV 487



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 20/238 (8%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           ALA   +M +    PD+   N ++N  C     + A  L+ QM   G++  PD +T+  L
Sbjct: 135 ALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQ--PDSFTFNTL 192

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I    ++            R  EA  L   M+ KG  PD+V Y  +++G CK   I+ AL
Sbjct: 193 IHGLFRH-----------NRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
            L   M +    P  V YN+ I        ++ A+ +  +M   N G+ P   +Y  +I 
Sbjct: 242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMD--NKGIRPNVVTYNSLIR 299

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRKRI 420
            LC  GR  +A   L+++++    P   T+  + DA        E   L D+ +++ I
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 18/231 (7%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M+      ++Y Y+++IN  CR    + A  +L +M   G+   PD+ T   L++ +C 
Sbjct: 106 QMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYE--PDIVTLNSLLNGFCH 163

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        RI +A  L   M+  G+ PD   +N LI G  +  R   A+ L D M
Sbjct: 164 -----------GNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRM 212

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
             KGC P+ VTY   +       +ID A+ +++KM+      P    Y  II ALC    
Sbjct: 213 VVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQ-GKIEPGVVIYNTIIDALCNYKN 271

Query: 374 VLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRI 420
           V +A +   E+ + G  P   TY    + +C+    ++   LL D + ++I
Sbjct: 272 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 322



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 15/224 (6%)

Query: 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN 186
           D F N +T   +   F +   V    +  ++MS+RG   +  T + T LI    +    +
Sbjct: 391 DCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRG--LVGNTVTYTTLIHGFFQARECD 448

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
            A   F +M      PD+  Y+++++ LC  G    A  + E ++    +  PD+YTY I
Sbjct: 449 NAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRS--KMEPDIYTYNI 506

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           +I   CK G           ++ +   LF  +  KG  P+VV Y  ++ G C+    E A
Sbjct: 507 MIEGMCKAG-----------KVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEA 555

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LF +M ++G +P+  TYN+ IR +    +   + E++R+M++
Sbjct: 556 DALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 38/150 (25%)

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL--NHGVPTSS 359
           +++ A+ LF DM K    P+ V ++  +   + +N+ D  I +  +MQNL  +H + T S
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 360 -------------------------SYTP-------IIHALCEAGRVLEARDFLAELVDG 387
                                     Y P       +++  C   R+ +A   + ++V+ 
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query: 388 GSVPREYTYKLVCDAL----NAAEEPSLLD 413
           G  P  +T+  +   L     A+E  +L+D
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVD 210


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 14/223 (6%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 209 QPDVYTYSVLINGLCKESKIDDANELFDEMLVKGL--VPNSVTFTTLIDGHCKNG----- 261

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +   PD++ YN LI G CK   +++A  L D+M+ KG  P
Sbjct: 262 ------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKP 315

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +++TY + I       ++D A E  ++M   N  +     YT +I  LC  G+ ++A   
Sbjct: 316 DKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLD-DVVYTALISGLCREGQSVDAEKM 374

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           L E++  G  P   TY ++ +      +       L++  RDG
Sbjct: 375 LREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDG 417



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 142 LYFFNILMHRFCKDGDIRIAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 191

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +I+ A ELFD+M  KG +P
Sbjct: 192 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVP 245

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A 
Sbjct: 246 NSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAH 302

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
             + E+   G  P + TY  + D 
Sbjct: 303 HLIDEMSMKGLKPDKITYTTLIDG 326



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 14/204 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G +  + + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A
Sbjct: 242 GLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 301

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L+++M + G +  PD  TYT LI   CK G      +  +R I E   L         
Sbjct: 302 HHLIDEMSMKGLK--PDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRL--------- 350

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
             D V Y  LI G C+  +   A ++  +M   G  P+  TY   I  +    ++ K  +
Sbjct: 351 --DDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 408

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHA 367
           ++++MQ   H VP+  +Y  +++ 
Sbjct: 409 LLKEMQRDGH-VPSVVTYNVLMNG 431



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 30/243 (12%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   +   A +++   + R G  + +       E  G +   D+Y +
Sbjct: 17  HTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIFETKGTQ-RSDLYVF 75

Query: 245 TILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GFVPDVVA 289
           + LI++Y + G       C +  R  + W           HL +L  FK   GF  +++ 
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILE 135

Query: 290 ---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
                    +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  + ++D+
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
              +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G VP   T+  +
Sbjct: 196 GFRLKSAM--LASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTL 253

Query: 400 CDA 402
            D 
Sbjct: 254 IDG 256


>gi|357135887|ref|XP_003569539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Brachypodium distachyon]
          Length = 476

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 22/247 (8%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGL--VNEALATFYRMKQFRCRPDVYAYNVVI 211
            L DM  R  G   TT++   L+K    +    + +A+  F  +     +PD  +YN VI
Sbjct: 148 LLADM--RAGGFAPTTATYNVLLKAHCSDASAPIEDAVRLFRNIP----KPDACSYNTVI 201

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           + LCR      A+ +  +M   G    P V TYT +I+    +  + GC       + +A
Sbjct: 202 DGLCRRSRRADAQEIFSEMVANGV--APTVVTYTTVIN----WLARDGC-------LDDA 248

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +F  M   G  P+VV Y+ LIDG CK  R   ALEL D M K+  +PN +TY+S I  
Sbjct: 249 LKMFDEMGRIGIAPNVVTYSSLIDGLCKGGRAASALELLDRMAKEAKLPNTITYSSVING 308

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
               + +++A+E++ +M+ L    P +  +  +I  LC AGR +EA ++L E+V  G  P
Sbjct: 309 LCKEDRLNEAMEVLDRMR-LQGRKPDAGLFGKLIVGLCGAGRAVEAANYLDEMVLSGVEP 367

Query: 392 REYTYKL 398
              T+ L
Sbjct: 368 NRVTWSL 374



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 23/216 (10%)

Query: 195 MKQFRCRPDVYA-------YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           ++ FR  P   A       Y  V+  L    +   A  LL  M   GF   P   TY +L
Sbjct: 110 LQLFRSAPSALALPHSARSYTAVLATLVSHSHLPLAHSLLADMRAGGF--APTTATYNVL 167

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           + ++C               I +A  LFR +      PD  +YN +IDG C+  R   A 
Sbjct: 168 LKAHCSDASAP---------IEDAVRLFRNI----PKPDACSYNTVIDGLCRRSRRADAQ 214

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
           E+F +M   G  P  VTY + I + +    +D A++M  +M  +    P   +Y+ +I  
Sbjct: 215 EIFSEMVANGVAPTVVTYTTVINWLARDGCLDDALKMFDEMGRIGIA-PNVVTYSSLIDG 273

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           LC+ GR   A + L  +     +P   TY  V + L
Sbjct: 274 LCKGGRAASALELLDRMAKEAKLPNTITYSSVINGL 309



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 13/174 (7%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
            NG   T  + T +I  L  +G +++AL  F  M +    P+V  Y+ +I+ LC+ G   
Sbjct: 222 ANGVAPTVVTYTTVINWLARDGCLDDALKMFDEMGRIGIAPNVVTYSSLIDGLCKGGRAA 281

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
            A  LL++M        P+  TY+ +I+  CK             R+ EA  +   M  +
Sbjct: 282 SALELLDRMAKEAKL--PNTITYSSVINGLCK-----------EDRLNEAMEVLDRMRLQ 328

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
           G  PD   +  LI G C   R   A    D+M   G  PNRVT++  +R    V
Sbjct: 329 GRKPDAGLFGKLIVGLCGAGRAVEAANYLDEMVLSGVEPNRVTWSLHVRINDAV 382



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 91/212 (42%), Gaps = 28/212 (13%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +G       + L  M++    +L  T + + +I  L +E  +NEA+    RM+    +PD
Sbjct: 276 KGGRAASALELLDRMAK--EAKLPNTITYSSVINGLCKEDRLNEAMEVLDRMRLQGRKPD 333

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI-------LISSYCKYGM 256
              +  +I  LC  G   +A   L++M L G    P+  T+++       ++++ C  G 
Sbjct: 334 AGLFGKLIVGLCGAGRAVEAANYLDEMVLSGVE--PNRVTWSLHVRINDAVVTALCAKG- 390

Query: 257 QTGCRKAIRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        EA   FR+   M  +G   +   ++ L++   K   +E+A  +  DM
Sbjct: 391 -------------EAGRTFRVYQSMRTRGISTEPGTFHLLVEFFSKKNDLEKAAHVVLDM 437

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
             + CIP R T++  +  Y    ++ +  E M
Sbjct: 438 LSEKCIPERETWDIILTRYWSKKKVRQEAEQM 469



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 10/131 (7%)

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY--SVVNEIDKAIEMMR 346
           +Y  ++        +  A  L  DM   G  P   TYN  ++ +       I+ A+ + R
Sbjct: 128 SYTAVLATLVSHSHLPLAHSLLADMRAGGFAPTTATYNVLLKAHCSDASAPIEDAVRLFR 187

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            +       P + SY  +I  LC   R  +A++  +E+V  G  P   TY  V   +N  
Sbjct: 188 NIPK-----PDACSYNTVIDGLCRRSRRADAQEIFSEMVANGVAPTVVTYTTV---INWL 239

Query: 407 EEPSLLDDGLR 417
                LDD L+
Sbjct: 240 ARDGCLDDALK 250


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 138/281 (49%), Gaps = 21/281 (7%)

Query: 122 VERFFDFFHNEMTCKEMGIVF----ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
           V R  D + +++T ++  ++F    AR +  + L  F K M R+   +  T    T +I 
Sbjct: 33  VTRCMDLYRSKLTMQDFSLIFREFAARSDWHRALRLF-KYMQRQQWCK-PTEHIYTIMIG 90

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
           ++G EGL+ +    F  M +   + +VYA+  +INA  R G +  +  LL +M+    + 
Sbjct: 91  IMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKE--QV 148

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN-HLFRLMLFKGFVPDVVAYNCLIDG 296
            P++ TY  ++++  K G+            WE   +LF  M  +G  PD++ YN L+  
Sbjct: 149 EPNLITYNTVLNACSKGGLD-----------WEGLLNLFAQMRHEGIQPDLITYNTLLSA 197

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
           C     +E+A  +F  MN+ G + + VTY S +  ++  N++ +  E++R+M++  +  P
Sbjct: 198 CSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGN-PP 256

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
             + Y  +I A  +AG V  A     ++  GG  P   TY 
Sbjct: 257 DIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYS 297



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 125/311 (40%), Gaps = 37/311 (11%)

Query: 119 YHWVERFFDFFHNEMTCKE-------MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           +H   R F +   +  CK        M  +  R   ++   +  +DM    N       +
Sbjct: 62  WHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPE--NDVKWNVYA 119

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQM 230
            T LI   G  G    +L    RMK+ +  P++  YN V+NA  + G ++     L  QM
Sbjct: 120 FTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQM 179

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGM------------QTGCRK------------AIRR 266
              G +  PD+ TY  L+S+    G+            ++G               A   
Sbjct: 180 RHEGIQ--PDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSN 237

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           ++     L R M  +G  PD+  YN LI+       +  A  +F  M + GC P+  TY+
Sbjct: 238 QLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYS 297

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           + +R Y      ++   +   M++L+   PT ++Y  +I    E G   E+ +   ++VD
Sbjct: 298 TLLRIYGNQGCFEQVRSLFSDMKDLST-PPTVATYNSLIQVFGEGGYFQESINLFHDMVD 356

Query: 387 GGSVPREYTYK 397
            G  P + TY 
Sbjct: 357 SGVKPDDATYS 367



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 109/283 (38%), Gaps = 28/283 (9%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            +A   NV G     K M R G    V T S   L+++ G +G   +  + F  MK    
Sbjct: 267 AYADAGNVHGAAGVFKQMQRGGCAPDVETYST--LLRIYGNQGCFEQVRSLFSDMKDLST 324

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P V  YN +I      G F ++  L   M   G +  PD  TY+ L+S   + G+    
Sbjct: 325 PPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVK--PDDATYSALLSVCGRGGLTREA 382

Query: 261 RKAIRRRI-------WEANHLF-----RLMLFK------------GFVPDVVAYNCLIDG 296
            K  +  +        EA+        ++ ++K            G  P V AY+ LI G
Sbjct: 383 AKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQG 442

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
             K      A      MNK G      + NS +  YS V   D+A+E   ++Q       
Sbjct: 443 YAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEV 502

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
              ++  ++   C+ G + EA++    + +   VP    Y L+
Sbjct: 503 DERTHETLLGVYCDMGLLEEAKEEFVIIKETSKVPGARVYCLL 545



 Score = 45.1 bits (105), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 52/251 (20%), Positives = 95/251 (37%), Gaps = 41/251 (16%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI   G+  +  +AL ++YR+++    P V AY+ +I    + G + +A   L  M   G
Sbjct: 404 LISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAG 463

Query: 235 FRCPPDVYTYTILISSYCKYG-----------MQTGCRKAIRRR--------------IW 269
           F+ P  V +   ++ +Y K G           +Q      +  R              + 
Sbjct: 464 FQAP--VSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCDMGLLE 521

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN------RV 323
           EA   F ++     VP    Y  L+  C +  + + A +L D+M   G +        R 
Sbjct: 522 EAKEEFVIIKETSKVPGARVYCLLLSLCVRRSKWDYATQLLDEMIAAGGLHQVVVGIVRG 581

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           TY++   +  V    D     +R M+       +   Y  ++  L    +   A   LA+
Sbjct: 582 TYDADFSWQVVEYAFDGL--KLRDMEE------SMDFYNALVELLVYCNQKARAARVLAD 633

Query: 384 LVDGGSVPREY 394
            +  G+ P  +
Sbjct: 634 AMQRGAFPEAF 644


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 146/322 (45%), Gaps = 35/322 (10%)

Query: 112 LNKATEFYHWVERFFDFFHNEM-------TCKEMGIVFARGNNVKGLWDFLKDMS---RR 161
           L+   +  H+ + F+   +N+M        C  + I+     NV  + + L  M+   RR
Sbjct: 103 LSGLAKIKHYSQVFY--LYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRR 160

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G    + T   T LIK L  E  +++A   F RM++  C P+   Y  ++  LCR GN +
Sbjct: 161 GYIPDIVT--YTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNIS 218

Query: 222 KARFLLEQM----ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR---------- 267
            A  L ++M     L G    P V +Y+I+I + CK   +   R                
Sbjct: 219 IALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVI 278

Query: 268 -----IWE-ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                +WE A  LF  M+ +G  P+VV +N LID  CK  ++  A +L + M ++G +PN
Sbjct: 279 SYTSLMWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPN 338

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            +TYNS I  + +V +++ A E+   M +     P    YT +I+  C+  +V EA    
Sbjct: 339 LLTYNSLIEGFCLVGDLNSARELFVSMPS-KGCEPDVICYTVLINGYCKTSKVEEAMKLY 397

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
             ++  G  P   TY  +   L
Sbjct: 398 NGMLQVGKRPDVKTYGALLTGL 419



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 18/215 (8%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           +A   F+ M      P + ++  +++ L ++ ++++  +L  QM L G    PD  T  I
Sbjct: 79  QAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGIS--PDCCTLNI 136

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           L++  C              R+ E   +   +L +G++PD+V Y  LI G C  +RI +A
Sbjct: 137 LLNCLCNV-----------NRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKA 185

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN--HGV---PTSSSY 361
             LF  M K GC PN +TY + ++       I  A+++ ++M N +  +G+   P   SY
Sbjct: 186 ALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISY 245

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           + II ALC+  R  EARD   E+   G  P   +Y
Sbjct: 246 SIIIDALCKDRREDEARDLFEEMKVQGMTPTVISY 280



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 116/274 (42%), Gaps = 33/274 (12%)

Query: 151 LWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
           +W+       +M  +G    V T +V  LI VL +EG V EA      M Q    P++  
Sbjct: 284 MWEEAKRLFNEMVNQGVQPNVVTFNV--LIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLT 341

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----------- 255
           YN +I   C VG+ N AR L   M  P   C PDV  YT+LI+ YCK             
Sbjct: 342 YNSLIEGFCLVGDLNSARELFVSM--PSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNG 399

Query: 256 -MQTGCRKAIRR------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
            +Q G R  ++             ++ +A  LF +M   G   D+  Y   ++G CK   
Sbjct: 400 MLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGC 459

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +  A+ELF+ +       +   +N  I       +++ A E+  K+       P   +Y 
Sbjct: 460 LFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQ-EELQPDVVTYN 518

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +IH  C  G+V++A     ++   G  P + TY
Sbjct: 519 IMIHEFCRGGQVVKANILFQKMEKNGCTPDKITY 552



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 24/231 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V E LA    + +    PD+  Y  +I  LC     +KA  L  +M+  G  C P+  TY
Sbjct: 147 VGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLG--CTPNAITY 204

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L+   C+ G  +   K + + +   + L+ +     F P V++Y+ +ID  CK  R +
Sbjct: 205 GTLMKGLCRTGNISIALK-LHQEMLNDSSLYGI----NFKPVVISYSIIIDALCKDRRED 259

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A +LF++M  +G  P  ++Y S +         ++A  +  +M  +N GV P   ++  
Sbjct: 260 EARDLFEEMKVQGMTPTVISYTSLMW--------EEAKRLFNEM--VNQGVQPNVVTFNV 309

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA------LNAAEE 408
           +I  LC+ G+V+EA+D L  ++  G VP   TY  + +       LN+A E
Sbjct: 310 LIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARE 360



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 29/233 (12%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           EA   F  M     +P+V  +NV+I+ LC+ G   +A+ LLE M   G    P++ TY  
Sbjct: 287 EAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIV--PNLLTYNS 344

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           LI  +C  G            +  A  LF  M  KG  PDV+ Y  LI+G CKT ++E A
Sbjct: 345 LIEGFCLVG-----------DLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEA 393

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPII 365
           ++L++ M + G  P+  TY + +       ++  A ++   M+   +G+P     Y   +
Sbjct: 394 MKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMK--VYGIPGDLYIYGIFL 451

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRK 418
           + LC+ G + EA +   +L       + Y  KL  +  N       L DGL K
Sbjct: 452 NGLCKNGCLFEAMELFNKL-------KSYNIKLDIECFNC------LIDGLCK 491


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M     +PDVY Y+V+IN LC+    ++A  L  +M   G    P+  
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ +L +GF PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ K   P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L  ++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 26/186 (13%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG +    + T LI    + G V+ A+  + ++      PD+  YN +I  LC+ G+  +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQ 294

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTG-------CRKAIR--------- 265
           AR L+++M +   +  PD  TYT LI   CK G ++T         ++ IR         
Sbjct: 295 ARDLIDEMSMKELK--PDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTAL 352

Query: 266 -------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                   R  +A  + R ML  G  PD   Y  +I+  CK   ++   +L  +M + G 
Sbjct: 353 ISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDGH 412

Query: 319 IPNRVT 324
           +P  VT
Sbjct: 413 VPCVVT 418



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 106/246 (43%), Gaps = 36/246 (14%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   +   A +++   + R G  + +      +E  G +   D+Y +
Sbjct: 11  HTLHSYCTMIHFLCTHQMLLEAKSLIQIVVSRKGKDSASAVFAAILETKGTQ-RSDIYVF 69

Query: 245 TILISSYCKYGMQTGCRKAIR-------RRIWEA--------NHLFRLMLFK---GFVPD 286
           + LI++Y + G     R AI         + W           HL +L  FK   GF  +
Sbjct: 70  SGLITAYLESGF---IRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKE 126

Query: 287 VVA---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           ++          +N L+   CK   +  A  +FD + K G  P+ V++N+ +  Y  + +
Sbjct: 127 ILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGD 186

Query: 338 IDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +D+   +   M     GV P   +Y+ +I+ LC+  ++ EA +   E++D G VP   T+
Sbjct: 187 LDEGFRLKSAMHA--SGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTF 244

Query: 397 KLVCDA 402
             + D 
Sbjct: 245 TTLIDG 250


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 117/270 (43%), Gaps = 28/270 (10%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           S   NG +  +     LI    + G+++EAL  F  M+     P+V  Y  VI ALCR+G
Sbjct: 437 SMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMG 496

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------------ 266
               A   L QM   G +  P+   Y  LI  +C +G     ++ +              
Sbjct: 497 RLADAMEKLSQMISIGLK--PNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNIT 554

Query: 267 -------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        R+  A  +F L++  G  PD+  +N LIDG C   ++++A  + D M
Sbjct: 555 FFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAM 614

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
              G  P+ VTY++ I  Y     ID  + + R+M       PT+ +Y+ ++  L  AGR
Sbjct: 615 VSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREML-CKRVKPTTVTYSLVLDGLFRAGR 673

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              A+    E+++ G+     TY ++   L
Sbjct: 674 TSAAKKMFHEMIESGTAMSISTYTIILQGL 703



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 118/259 (45%), Gaps = 15/259 (5%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
           G+  +   D L  M++ G+G      S T +I  L  EG +++A   F  M Q    P+V
Sbjct: 249 GSRSQEALDMLLRMTK-GDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNV 307

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             YN +++ALC+    +KA  +L QM     +  PD  TYT +I  Y   G         
Sbjct: 308 VTYNSIVHALCKARAMDKAELVLRQMFDNSIQ--PDEVTYTAMIHGYSCLG--------- 356

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             R  EA  +F+ M  +G +PD+V +N L+D  CK  R + A E+F  +  KG  P+ ++
Sbjct: 357 --RWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIIS 414

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y+  +  Y+          +   M + N  V  S  +  +I+A  + G + EA     E+
Sbjct: 415 YSILLHGYATEGRFVDMNNLFHSMTD-NGIVADSHCFNILINAHAKRGMMDEALLIFTEM 473

Query: 385 VDGGSVPREYTYKLVCDAL 403
              G  P   TY  V  AL
Sbjct: 474 RGQGVSPNVVTYATVIAAL 492



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 145/324 (44%), Gaps = 48/324 (14%)

Query: 144 RGNNVKGLWD----FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
            G +  G W       K+M+R G   ++VT +S   L+  L +     EA   F+ +   
Sbjct: 350 HGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNS---LMDSLCKHKRSKEAAEIFHSIATK 406

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
             +PD+ +Y+++++     G F     L   M   G     D + + ILI+++ K GM  
Sbjct: 407 GHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGI--VADSHCFNILINAHAKRGMMD 464

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                      EA  +F  M  +G  P+VV Y  +I   C+  R+  A+E    M   G 
Sbjct: 465 -----------EALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGL 513

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
            PN V Y+S I+ +    ++ KA E++ +M +     P  + ++ IIH+LC  GRV+ A+
Sbjct: 514 KPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQ 573

Query: 379 DFLAELVDGGSVPREYTYKLVCDA-----------------LNAAEEP-----SLLDDGL 416
           D    ++  G  P  +T+  + D                  ++A  EP     S L +G 
Sbjct: 574 DVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGY 633

Query: 417 RK--RIRDGIEYRFRQVM--KVKP 436
            K  RI DG+   FR+++  +VKP
Sbjct: 634 FKSGRIDDGL-ILFREMLCKRVKP 656



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 14/215 (6%)

Query: 186 NEALATF-YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +EAL+   +RM +  C PD ++YN VI +LC      +A  +L +M   G  C PDV +Y
Sbjct: 217 DEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMT-KGDGCSPDVVSY 275

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T++I      G            I +A +LF  M+ KG VP+VV YN ++   CK   ++
Sbjct: 276 TMVIHGLFMEG-----------EISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMD 324

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +A  +   M      P+ VTY + I  YS +    +A +M ++M      +P   ++  +
Sbjct: 325 KAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTR-EGLIPDIVTFNSL 383

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           + +LC+  R  EA +    +   G  P   +Y ++
Sbjct: 384 MDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSIL 418



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 143/328 (43%), Gaps = 40/328 (12%)

Query: 97  LGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLK 156
           L  A  +  Q +++GL   T  YH + + F        C    ++ A+        + + 
Sbjct: 498 LADAMEKLSQMISIGLKPNTVVYHSLIQGF--------CTHGDLIKAK--------ELVS 541

Query: 157 DMSRRGNGELVTTSSVT---CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           +M  +G    +   ++T    +I  L  EG V  A   F  +     RPD++ +N +I+ 
Sbjct: 542 EMMDQG----IPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDG 597

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C VG  +KA  +L+ M   G    PDV TY+ LI+ Y K G           RI +   
Sbjct: 598 YCLVGKMDKAFGVLDAMVSAG--TEPDVVTYSTLINGYFKSG-----------RIDDGLI 644

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LFR ML K   P  V Y+ ++DG  +  R   A ++F +M + G   +  TY   ++   
Sbjct: 645 LFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLC 704

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             N  D+AI +  K+  +N     +   T +IHAL +  R  EA D  A +   G VP  
Sbjct: 705 RNNCTDEAITLFHKLGAMNLKFEIAILNT-MIHALYKVKRREEAHDLFASVSASGLVPNA 763

Query: 394 YTYKLVCDAL---NAAEEPSLLDDGLRK 418
            TY ++   L    + EE  ++   + K
Sbjct: 764 STYGVMIINLLKEGSVEEADIMFSSMEK 791



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 12/189 (6%)

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
           P  V+TY IL+   C+            RR       F  +L  G   D +  N  +   
Sbjct: 162 PLTVHTYGILMDCCCR-----------ARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCL 210

Query: 298 CKTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
           C   R + AL  L   M++ GC+P+  +YN+ I+     +   +A++M+ +M   +   P
Sbjct: 211 CYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSP 270

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
              SYT +IH L   G + +A +   E+V  G VP   TY  +  AL  A      +  L
Sbjct: 271 DVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVL 330

Query: 417 RKRIRDGIE 425
           R+   + I+
Sbjct: 331 RQMFDNSIQ 339



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 97/254 (38%), Gaps = 29/254 (11%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +  L  M   G    V T S   LI    + G +++ L  F  M   R +P    Y++V+
Sbjct: 608 FGVLDAMVSAGTEPDVVTYST--LINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVL 665

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY--------------GMQ 257
           + L R G  + A+ +  +M   G      + TYTI++   C+                M 
Sbjct: 666 DGLFRAGRTSAAKKMFHEMIESG--TAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMN 723

Query: 258 TGCRKAIR----------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
                AI           +R  EA+ LF  +   G VP+   Y  +I    K   +E A 
Sbjct: 724 LKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEAD 783

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
            +F  M K GC P+    N  IR      EI KA   M K+      +  S++ + +I  
Sbjct: 784 IMFSSMEKTGCAPSSRLLNDIIRMLLQKGEIVKAGYYMSKVDGTIISLEASTT-SLLISL 842

Query: 368 LCEAGRVLEARDFL 381
               GR  E   FL
Sbjct: 843 FASKGRYREQIKFL 856


>gi|255660912|gb|ACU25625.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 481

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 135/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G++G+V E++  F RM++      + +Y+ +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKQGIVQESVKLFDRMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ +LI  +   G           ++  AN  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVLIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++  A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMXEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARSILKEMMDKYLAPTD 290



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LI+S CK G            +  A+ + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLITSQCKSG-----------HLDAASDVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGVLIENFCKAGQYDQAVKLLDKVIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L+  G
Sbjct: 362 QSTL-HLEP--SAYNPMIEYLCNNGQAAKAETLVRQLLKLG 399


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M     +PDVY Y+V+IN LC+    ++A  L ++M + G    P   
Sbjct: 174 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGL--VPXGV 231

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +  +PD++ YN LI G CK   
Sbjct: 232 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGB 280

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A  L  +M+ KG  P+++TY + I       ++D A E  ++M   N  +    +YT
Sbjct: 281 LKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD-DVAYT 339

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 340 ALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRD 399

Query: 423 G 423
           G
Sbjct: 400 G 400



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 24/206 (11%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
             +Y +N++++  C+ GN   A+ + + +   G R  P V +Y  L+S Y + G      
Sbjct: 123 ASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLR--PSVVSYNTLMSGYIRLG------ 174

Query: 262 KAIRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                   + +  FRL   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M   G 
Sbjct: 175 --------DLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGL 226

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           +P  VT+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +
Sbjct: 227 VPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSL---LPDLITYNTLIYGLCKKGBLKQ 283

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDA 402
           A   + E+   G  P + TY  + D 
Sbjct: 284 AHVLIXEMSLKGXKPDKITYTTLIDG 309



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 16/198 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ GB  +A  L+ +M
Sbjct: 232 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEM 291

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
            L G +  PD  TYT LI   CK G + T      R+R+ + N   RL        D VA
Sbjct: 292 SLKGXK--PDKITYTTLIDGCCKEGDLDTAFEH--RKRMIQEN--IRL--------DDVA 337

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  LI G C+  R   A ++  +M   G  P+  TY   I  +    ++    +++++MQ
Sbjct: 338 YTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQ 397

Query: 350 NLNHGVPTSSSYTPIIHA 367
              H VP+  +Y  +++ 
Sbjct: 398 RDGH-VPSVVTYNVLMNG 414


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 132/328 (40%), Gaps = 64/328 (19%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A E++  +     F H  +T + M    A    +  +   L+ M   G      + S   
Sbjct: 59  ALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEG-----ISCSEDL 113

Query: 175 LIKVLGE---EGLVNEALATFYRMKQFRCRP----------------------------- 202
            I V+G     G   +AL TFYRM+ FR +P                             
Sbjct: 114 FISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMK 173

Query: 203 ------DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
                 +V+ YN+++ ALC+    + A  LL +M   G  C PD  +YT LISS CK G 
Sbjct: 174 KDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKG--CDPDEVSYTTLISSLCKLG- 230

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                     ++ EA  L        F P V  YN LI+G CK Y  E A +L D+M  K
Sbjct: 231 ----------KVKEARELAM-----SFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNK 275

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVL 375
           G  PN ++Y + I   S    ++ ++ ++ KM     G  P   ++T +I      G   
Sbjct: 276 GIDPNVISYTTIINALSDAGNVELSLAVLAKM--FARGCSPNLHTFTSLIKGFFLKGGSH 333

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           EA DF   ++  G VP    Y  +   L
Sbjct: 334 EALDFWDRMIREGVVPNVVAYNALMHGL 361



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 120/266 (45%), Gaps = 47/266 (17%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LIK    +G  +EAL  + RM +    P+V AYN +++ LC   +   A  +  QM
Sbjct: 318 TFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQM 377

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E+ G  C P+V TY+ LI  Y K G   G           A+ ++  M+  G  P+VVAY
Sbjct: 378 EING--CCPNVRTYSALIDGYAKAGDLDG-----------ASEVWNWMITHGCHPNVVAY 424

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
            C++D  C+     +A  L ++M  + C PN VT+N+FI+       +D AI++  +M N
Sbjct: 425 TCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGN 484

Query: 351 LNHGVPTSS----------------------------------SYTPIIHALCEAGRVLE 376
                 T++                                  +Y  II+  C AG + E
Sbjct: 485 SGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGE 544

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDA 402
           A + L ++V  G+ P   T  +V DA
Sbjct: 545 ALELLGKMVVRGTKPDAITVNIVIDA 570



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 101/234 (43%), Gaps = 14/234 (5%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG      + + LI    + G ++ A   +  M    C P+V AY  +++ LCR   FN+
Sbjct: 380 NGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQ 439

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  L+E M++    CPP+  T+   I   C  G           R+  A  +F  M   G
Sbjct: 440 AYCLIENMQVE--NCPPNTVTFNTFIKGLCGSG-----------RVDWAIKVFDQMGNSG 486

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+   YN L+D   K  R   A  L  DM  +G   N VTYN+ I  Y     + +A+
Sbjct: 487 CFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEAL 546

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           E++ KM  +    P + +   +I A C+ G+V  A   +  L  G   P    Y
Sbjct: 547 ELLGKMV-VRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAY 599



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 37/259 (14%)

Query: 175 LIKVLGEEGLVNEALATFYRM---KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           ++K L  E  +  AL  F  +   K F+  P    Y ++I  L      +  ++LL+QM+
Sbjct: 46  VLKRLKHEHDITLALEYFKSIANSKSFKHTP--LTYQMMIEKLASEREMDCVQYLLQQMK 103

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------------------------R 267
           L G  C  D++    +I SY + G      K   R                        R
Sbjct: 104 LEGISCSEDLFIS--VIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENR 161

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
               N ++  M   G  P+V  YN L+   CK  R++ A +L  +M+ KGC P+ V+Y +
Sbjct: 162 FQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTT 221

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I     + ++ +A E+           P+   Y  +I+ +C+     EA   L E+++ 
Sbjct: 222 LISSLCKLGKVKEARELAMSF------TPSVPVYNALINGVCKEYTFEEAFQLLDEMMNK 275

Query: 388 GSVPREYTYKLVCDALNAA 406
           G  P   +Y  + +AL+ A
Sbjct: 276 GIDPNVISYTTIINALSDA 294



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 16/201 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +    IK L   G V+ A+  F +M    C P+   YN ++++L +   F +A  L++
Sbjct: 456 TVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVK 515

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            ME  G     ++ TY  +I  YC  GM           + EA  L   M+ +G  PD +
Sbjct: 516 DMEHRGIEL--NLVTYNTIIYGYCCAGM-----------LGEALELLGKMVVRGTKPDAI 562

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
             N +ID  CK  ++  A++L D ++     P+ + Y S I        +++AI  +R+M
Sbjct: 563 TVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRM 622

Query: 349 QNLNHGV-PTSSSYTPIIHAL 368
             L+ G+ P  +++  ++  L
Sbjct: 623 --LSEGISPNVATWNVLVRHL 641


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 125/266 (46%), Gaps = 17/266 (6%)

Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
           M  VF  G+  KG   F +D+  +G G L    S + LI  L + G   E  + F+ MKQ
Sbjct: 31  MDCVFKAGDVEKGRAIF-EDI--KGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQ 87

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
                D  AYN V++  C+ G  +KA   LE+M++     PP V TY  +I    K    
Sbjct: 88  RGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVK--HVPPTVATYGSIIDGLAKI--- 142

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                    R+ EA  LF     KG   +V+ Y+ LIDG  K  RI+ A  + ++M KKG
Sbjct: 143 --------DRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKG 194

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             PN  T+NS +       EI++A+   + M+ +    P + +Y+ +I+ LC   +  +A
Sbjct: 195 LAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCS-PNTYTYSILINGLCRVQKYNKA 253

Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
             F  E+   G VP   TY  +   L
Sbjct: 254 FVFWQEMQKQGLVPNVVTYTTMISGL 279



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 109/218 (50%), Gaps = 16/218 (7%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           F  M +  C+PD+   N  ++ + + G+  K R + E ++  GF   PDV +Y+ILI   
Sbjct: 12  FKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFL--PDVRSYSILIHGL 69

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
            K G           +  E + +F  M  +GF  D  AYN ++DG CK+ ++++A E  +
Sbjct: 70  TKAG-----------QARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALE 118

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCE 370
           +M  K   P   TY S I   + ++ +D+A  +  + +  + G+  +   Y+ +I    +
Sbjct: 119 EMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAK--SKGIELNVIVYSSLIDGFGK 176

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            GR+ EA   L E++  G  P  YT+  + DAL  AEE
Sbjct: 177 VGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEE 214



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 18/198 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   +   +  L++M ++G    V T +      V  EE  +NEAL  F  MK+ +C 
Sbjct: 174 FGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEE--INEALICFQSMKEMKCS 231

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+ Y Y+++IN LCRV  +NKA    ++M+  G    P+V TYT +IS   K G      
Sbjct: 232 PNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGL--VPNVVTYTTMISGLAKVG------ 283

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I +A  LF      G +PD  ++N LI+G     R   A  +F++   +GC   
Sbjct: 284 -----NITDACSLFERFKANGGIPDAASFNALIEGMSHANRAIEAYHVFEETRLRGC--- 335

Query: 322 RVTYNSFIRYYSVVNEID 339
           R+   + I     +N+ +
Sbjct: 336 RINVKACISLLDALNKAE 353



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 1/137 (0%)

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
           R  + + +F+ M  +G  PD+   N  +D   K   +E+   +F+D+   G +P+  +Y+
Sbjct: 4   RKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYS 63

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             I   +   +  +   +   M+     +  + +Y  ++   C++G+V +A + L E+  
Sbjct: 64  ILIHGLTKAGQARETSSIFHAMKQRGFALD-ARAYNAVVDGFCKSGKVDKAYEALEEMKV 122

Query: 387 GGSVPREYTYKLVCDAL 403
               P   TY  + D L
Sbjct: 123 KHVPPTVATYGSIIDGL 139


>gi|255660946|gb|ACU25642.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 484

 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 134/281 (47%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHHKIIEILGRASKLNHARCILLDMPKKG---LEWDEDLWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            LI   G+ G+V E++  F +M++      + +Y+ +   + R G +  A+    +M   
Sbjct: 85  LLIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ I+I  +   G           ++  AN  F  M  +  +PDVV YN +
Sbjct: 145 G--NEPTRHTFNIMIWGFFLSG-----------KVETANRFFEDMKSREIMPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I G  +  ++E A + F +M  +   P  VTY + I+ Y  V+ +D A+ ++ +M+    
Sbjct: 192 IXGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E+V+    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAQKMSEARSILKEMVEKYITPTD 290



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 104/242 (42%), Gaps = 31/242 (12%)

Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM---------- 256
           ++ +I  L R    N AR +L  M   G     D++   +LI SY K G+          
Sbjct: 48  HHKIIEILGRASKLNHARCILLDMPKKGLEWDEDLWV--LLIDSYGKAGIVQESVKLFQK 105

Query: 257 --QTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
             + G  + I            R R   A   F  ML +G  P    +N +I G   + +
Sbjct: 106 MEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGNEPTRHTFNIMIWGFFLSGK 165

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +E A   F+DM  +  +P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT
Sbjct: 166 VETANRFFEDMKSREIMPDVVTYNTMIXGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYT 224

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRK 418
            +I       RV +A   + E+   G  P   TY      +C+A   +E  S+L + + K
Sbjct: 225 TLIKGYVSVDRVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAQKMSEARSILKEMVEK 284

Query: 419 RI 420
            I
Sbjct: 285 YI 286



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 25/214 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA   F  MK     P V  Y  +I     V   + A  L+E+M+  GF   P+  TY
Sbjct: 201 MEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMK--GFGIKPNAITY 258

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRI 303
           + L+   C             +++ EA  + + M+ K   P D   +  LI G CK   +
Sbjct: 259 STLLPGLCN-----------AQKMSEARSILKEMVEKYITPTDNSIFLRLISGQCKAGDL 307

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM---------QNLNHG 354
           + A ++   M +         Y   I  Y    + D+A++++ ++         Q+  H 
Sbjct: 308 DAAADVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDRLIEKDIILRPQSTLHL 367

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            P  S+Y P+I  LC  G+  +A   + +L+  G
Sbjct: 368 EP--SAYNPLIEYLCNNGQTAKAESLVRQLMKLG 399



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 22/264 (8%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAQKMSEARSIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LIS  CK G            +  A  + + M+      + 
Sbjct: 279 KEM-VEKYITPTDNSIFLRLISGQCKAG-----------DLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCI--PNRV------TYNSFIRYYSVVNEID 339
             Y  LI+  CK  + ++A++L D + +K  I  P          YN  I Y     +  
Sbjct: 327 GHYGVLIENYCKAGQYDQAVKLLDRLIEKDIILRPQSTLHLEPSAYNPLIEYLCNNGQTA 386

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           KA  ++R++  L  GV   ++   +I    + G    A + L  ++   +   +  Y  +
Sbjct: 387 KAESLVRQLMKL--GVQDPTALNALIRGHSQEGSPDSAFELLKIMLRRKARSEKSAYDSL 444

Query: 400 CDALNAAEEPSLLDDGLRKRIRDG 423
             +     EP+     L   I +G
Sbjct: 445 VQSYLKKSEPADAKAALDSMIENG 468


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  ++  ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD-XVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWGLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M   G +P
Sbjct: 186 ------DLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+  +M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D   E+   G  P + TY  + D 
Sbjct: 297 DLXDEMSMKGLKPDKITYTTLIDG 320



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG +    + T LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANELFDEMLD-----NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L ++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLK--PDKITYTTLIDGSCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN--IRL--------DXVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37230-like [Cucumis sativus]
          Length = 760

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 177/409 (43%), Gaps = 49/409 (11%)

Query: 3   VSKP--LNSKHT-CLVQQVLPLMLKN-VPFD--AKLAASTTKTQNPFTIESVADVLKSIP 56
           +SKP  LNS H     Q+ +    +N  P D  A   A+  +T     +  V  V   IP
Sbjct: 22  ISKPTALNSLHFFSSTQEPISTATQNGSPNDPSASSDAALPQTGESAAVNGVQQVKGRIP 81

Query: 57  RFFFQSPRSI---------GRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQK 107
           R   + P  +          R+   R +  +R  ++ +  +N+  NVL    AA +    
Sbjct: 82  RGRPRDPEKLEXIICKMMANREWTTRLQNSIRS-LVPQFDHNLVYNVL---HAAKKSEH- 136

Query: 108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG---NG 164
                  A  F+ WVER   F H+  T  ++  +  R + +      L DM  +G   + 
Sbjct: 137 -------ALNFFRWVERAGLFQHDRETHFKIIEILGRASKLNHARCILLDMPNKGVQWDE 189

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +L        LI+  G+ G+V EA+  F +MK+      V +Y+ +   + R G +  A+
Sbjct: 190 DLFVV-----LIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFKEIMRRGRYMMAK 244

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
                M   G    P  +TY +++     +G     R    +R +E       M  +G  
Sbjct: 245 RYFNAMLNEGIE--PIRHTYNVML-----WGFFLSLRLETAKRFYED------MKSRGIS 291

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           PDVV YN +I+G C+   +E A + F +M  K   P  ++Y + I+ Y  V+  D A+ +
Sbjct: 292 PDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRL 351

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             +M+      P   +Y+ ++  LC+A ++ EAR  L E+V     P++
Sbjct: 352 FEEMKAAGEK-PNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKD 399



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 112/277 (40%), Gaps = 25/277 (9%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  S T +IK        ++AL  F  MK    +P+   Y+ ++  LC      +AR +L
Sbjct: 328 TVISYTTMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKIL 387

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            +M    F  P D   +  L+S  CK+G            +  A H+ + M+      + 
Sbjct: 388 TEMVTRHF-APKDNSIFMRLLSCQCKHG-----------DLDAAMHVLKAMIRLSIPTEA 435

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCI--PNRV------TYNSFIRYYSVVNEID 339
             Y  LI+ CCK    ++A++L +++ +K  I  P          YN  I+Y     +  
Sbjct: 436 GHYGILIENCCKAGMYDQAVKLLENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTG 495

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           KA    R++  L  G+    ++  +I    + G    A + L  +   G      +YKL+
Sbjct: 496 KADTFFRQL--LKKGIQDEVAFNNLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLL 553

Query: 400 CDALNAAEEPSLLDDGLRKRIRDG---IEYRFRQVMK 433
             +  +  EP+     L   I +G       FR VM+
Sbjct: 554 IKSYLSKGEPADAKTALDSMIENGHSPDSALFRSVME 590


>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Cucumis sativus]
          Length = 760

 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 177/409 (43%), Gaps = 49/409 (11%)

Query: 3   VSKP--LNSKHT-CLVQQVLPLMLKN-VPFD--AKLAASTTKTQNPFTIESVADVLKSIP 56
           +SKP  LNS H     Q+ +    +N  P D  A   A+  +T     +  V  V   IP
Sbjct: 22  ISKPTALNSLHFFSSTQEPISTATQNGSPNDPSASSDAALPQTGESAAVNGVQQVKGRIP 81

Query: 57  RFFFQSPRSI---------GRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQK 107
           R   + P  +          R+   R +  +R  ++ +  +N+  NVL    AA +    
Sbjct: 82  RGRPRDPEKLEKIICKMMANREWTTRLQNSIRS-LVPQFDHNLVYNVL---HAAKKSEH- 136

Query: 108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG---NG 164
                  A  F+ WVER   F H+  T  ++  +  R + +      L DM  +G   + 
Sbjct: 137 -------ALNFFRWVERAGLFQHDRETHFKIIEILGRASKLNHARCILLDMPNKGVQWDE 189

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +L        LI+  G+ G+V EA+  F +MK+      V +Y+ +   + R G +  A+
Sbjct: 190 DLFVV-----LIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFKEIMRRGRYMMAK 244

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
                M   G    P  +TY +++     +G     R    +R +E       M  +G  
Sbjct: 245 RYFNAMLNEGIE--PIRHTYNVML-----WGFFLSLRLETAKRFYED------MKSRGIS 291

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           PDVV YN +I+G C+   +E A + F +M  K   P  ++Y + I+ Y  V+  D A+ +
Sbjct: 292 PDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTTMIKGYVSVSRADDALRL 351

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             +M+      P   +Y+ ++  LC+A ++ EAR  L E+V     P++
Sbjct: 352 FEEMKAAGEK-PNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKD 399



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 114/284 (40%), Gaps = 25/284 (8%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           +G     T  S T +IK        ++AL  F  MK    +P+   Y+ ++  LC     
Sbjct: 321 KGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKL 380

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            +AR +L +M    F  P D   +  L+S  CK+G            +  A H+ + M+ 
Sbjct: 381 PEARKILTEMVTRHF-APKDNSIFMRLLSCQCKHG-----------DLDAAMHVLKAMIR 428

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI--PNRV------TYNSFIRYY 332
                +   Y  LI+ CCK    ++A++L +++ +K  I  P          YN  I+Y 
Sbjct: 429 LSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKEIILRPQSTLEMEASAYNLIIQYL 488

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
               +  KA    R++  L  G+    ++  +I    + G    A + L  +   G    
Sbjct: 489 CNHGQTGKADTFFRQL--LKKGIQDEVAFNNLIRGHAKEGNPDLAFEMLKIMGRRGVSRD 546

Query: 393 EYTYKLVCDALNAAEEPSLLDDGLRKRIRDG---IEYRFRQVMK 433
             +YKL+  +  +  EP+     L   I +G       FR VM+
Sbjct: 547 AESYKLLIKSYLSKGEPADAKTALDSMIENGHSPDSALFRSVME 590


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 104/198 (52%), Gaps = 14/198 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G      
Sbjct: 207 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--IPNGVTFTTLIDGHCKNG------ 258

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+  A  +++ ML +  +PD++ YN LI G CK   +++A +L D+M+ KG  P+
Sbjct: 259 -----RVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 313

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           + TY + I       ++D A E  ++M   N  +    +Y  +I  LC+ GR ++A   L
Sbjct: 314 KFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD-DVAYAALISGLCQEGRSVDAEKML 372

Query: 382 AELVDGGSVPREYTYKLV 399
            E++  G  P   TY ++
Sbjct: 373 REMLSVGLKPDTGTYTMI 390



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 106/201 (52%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 139 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 188

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   ML  G +PDV  Y+ LI+G CK  +++ A ELFD+M  KG IPN V
Sbjct: 189 ---HLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGV 245

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A D +
Sbjct: 246 TFTTLIDGHCKNGRVDFAMEIYKRMLSQSL---LPDLITYNTLIYGLCKKGDLKQAHDLI 302

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+   G  P ++TY  + D 
Sbjct: 303 DEMSMKGLKPDKFTYTTLIDG 323



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 16/198 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + RM      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 246 TFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 305

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
            + G +  PD +TYT LI   CK G + T      R+R+ + N   RL        D VA
Sbjct: 306 SMKGLK--PDKFTYTTLIDGCCKEGDLDTAFEH--RKRMIQEN--IRL--------DDVA 351

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ
Sbjct: 352 YAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQ 411

Query: 350 NLNHGVPTSSSYTPIIHA 367
              H  P+  +Y  +++ 
Sbjct: 412 RNGHA-PSVVTYNVLMNG 428



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 15/153 (9%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  ++K   D + +MS +G        + T LI    +EG ++ A     RM Q   R D
Sbjct: 291 KKGDLKQAHDLIDEMSMKGLKP--DKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLD 348

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
             AY  +I+ LC+ G    A  +L +M   G +  PD  TYT++I+ +CK G        
Sbjct: 349 DVAYAALISGLCQEGRSVDAEKMLREMLSVGLK--PDTGTYTMIINEFCKKG-------- 398

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
               +W+ + L + M   G  P VV YN L++G
Sbjct: 399 ---DVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 106/243 (43%), Gaps = 30/243 (12%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   +   A +++   + R G  + +      +E  G +   D+Y +
Sbjct: 14  HTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQ-RSDIYVF 72

Query: 245 TILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GFVPDVVA 289
           + LI++Y + G       C +  R  ++W           HL +L  FK   GF  +++ 
Sbjct: 73  SGLITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILE 132

Query: 290 ---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
                    +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  +  +D+
Sbjct: 133 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDE 192

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
              +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G +P   T+  +
Sbjct: 193 GFRLKSAM--LASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTL 250

Query: 400 CDA 402
            D 
Sbjct: 251 IDG 253


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 127/272 (46%), Gaps = 37/272 (13%)

Query: 144 RGNNVKGLWDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           RG +++     L DMSR  +        S T +++ L      +EA+A    M+    R 
Sbjct: 89  RGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRA 148

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------- 255
           DV  Y  +I  LC     + A  LL +M   G    P+V  Y+ L+  YC+ G       
Sbjct: 149 DVVTYGTLIRGLCDAAELDGALELLGEMCGSGVH--PNVIVYSCLLRGYCRSGRWQDVSK 206

Query: 256 ---------------MQTG-----CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
                          M TG     C+K    RI +A  +  +M+ +G  P+VV YN LI+
Sbjct: 207 VFEEMSRLGVEPDVIMFTGFIDDLCKKG---RIGKAVKVKDIMVQRGLEPNVVTYNVLIN 263

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
             CK   +  AL L ++M+ KG  P+ VTYN+ I   S V E+D A+ ++ +M   +  V
Sbjct: 264 CLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLV 323

Query: 356 -PTSSSYTPIIHALCEAGRVLEA---RDFLAE 383
            P   ++  +IH LC+ GR+ +A   R+ +AE
Sbjct: 324 EPDVVTFNSVIHGLCKIGRMRQAISVREMMAE 355



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 120/275 (43%), Gaps = 46/275 (16%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M +RG    V T +V  LI  L +EG V EALA    M      PDV  YN +I  L  V
Sbjct: 246 MVQRGLEPNVVTYNV--LINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGV 303

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
              + A  LLE+M        PDV T+  +I   CK G           R+ +A  +  +
Sbjct: 304 LEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIG-----------RMRQAISVREM 352

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M  +G + ++V YN LI G  + +++  A+ L  ++   G  P+  TY+  I  +S + E
Sbjct: 353 MAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLWE 412

Query: 338 IDKAIEMMRKMQN------LNHGVP---------------------------TSSSYTPI 364
           +D+A   +R M        L H +P                            + +Y+ +
Sbjct: 413 VDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMNCGLDAVAYSTM 472

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           ++  C++G +  A+  L +++D G  P   TY ++
Sbjct: 473 MYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSIL 507



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 97/224 (43%), Gaps = 23/224 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALC-RVGNFNKARFLLEQMEL---PGFRCPPD 240
           V EA +    +   R   D  +YN+V+ ALC R G+  +A  LL  M     P  R  P+
Sbjct: 60  VTEACSLLSALPDVR---DAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAAR--PN 114

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
             +YT+++   C             RR  EA  L R M   G   DVV Y  LI G C  
Sbjct: 115 AVSYTMVMRGLCA-----------SRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDA 163

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSS 359
             ++ ALEL  +M   G  PN + Y+  +R Y          ++  +M  L  GV P   
Sbjct: 164 AELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRL--GVEPDVI 221

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +T  I  LC+ GR+ +A      +V  G  P   TY ++ + L
Sbjct: 222 MFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCL 265



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 14/171 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V+ A      M Q   R +++ Y  ++ ALC++G   +A  L  +M++    C  D   Y
Sbjct: 413 VDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDM---NCGLDAVAY 469

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           + ++   CK G            I  A  L + ML +G  PD V Y+ LI+   K   +E
Sbjct: 470 STMMYGACKSG-----------DIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLE 518

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
            A  +   M   G +P+   ++S I+ YS   +I+K ++++ +M+  N  +
Sbjct: 519 EAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKILDLIHEMRAKNVAI 569


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 130/282 (46%), Gaps = 45/282 (15%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRC-------------------------------RPD 203
           L+ +L + GL+++A+    R++Q R                                 P+
Sbjct: 139 LLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEHLPAPN 198

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V+ +N+VI+ LC+ G   +AR L  +M+  G  C PDV TY  LI  Y K G        
Sbjct: 199 VFTFNIVIDFLCKQGELVEARALFVRMKAMG--CSPDVVTYNSLIDGYGKCG-------- 248

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   M   G   DVV YN LI+   K   IE+A   F +M + G + N V
Sbjct: 249 ---ELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVV 305

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           T ++F+  +     + +A+++  +M+ +   +P   +YT ++   C+AGR+ +A   L E
Sbjct: 306 TLSTFVDAFCKEGLVREAMKLFAQMR-VRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDE 364

Query: 384 LVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           +V  G VP   TY ++ D L    + ++ DD L    R G++
Sbjct: 365 MVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVK 406



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 125/298 (41%), Gaps = 68/298 (22%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L ++G + EA A F RMK   C PDV  YN +I+   + G   +   L+ +M   G
Sbjct: 205 VIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSG 264

Query: 235 FRCPPDVYTYTILISSYCKYG---------------------------MQTGCRKAIRRR 267
             C  DV TY  LI+ + K+G                           +   C++ + R 
Sbjct: 265 --CAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVR- 321

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
             EA  LF  M  +G +P+   Y  L+DG CK  R++ A+ L D+M  +G +PN VTY  
Sbjct: 322 --EAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTV 379

Query: 328 FI--------------------RYYSVVNEI---------------DKAIEMMRKMQNLN 352
            +                    R     NE+               ++A++++ +M+N  
Sbjct: 380 MVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKG 439

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
             +   S Y  +I  LC+  ++ EA+  L ++ D G  P    Y  + DA   A + S
Sbjct: 440 MELDV-SLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKES 496



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 125/266 (46%), Gaps = 18/266 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F++   ++  + +  +M R G   +    +++  +    +EGLV EA+  F +M+     
Sbjct: 279 FSKFGWIEKAYSYFGEMKRLG--VMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMM 336

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+ + Y  +++  C+ G  + A  LL++M   G    P+V TYT+++   CK G      
Sbjct: 337 PNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGL--VPNVVTYTVMVDGLCKEG------ 388

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++  A+ +  LM   G   + + Y  LI G       ERAL+L ++M  KG   +
Sbjct: 389 -----KVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELD 443

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
              Y + I     V ++D+A  ++ KM +   G+ P +  YT I+ A  +AG+  EA   
Sbjct: 444 VSLYGTLIWGLCKVQKLDEAKSLLHKMDDC--GLRPNTVIYTTIMDAFFKAGKESEAVAL 501

Query: 381 LAELVDGGSVPREYTYKLVCDALNAA 406
           L ++ D G  P   TY  + D L  A
Sbjct: 502 LHKIPDSGLQPNVVTYCALIDGLCKA 527



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 114/256 (44%), Gaps = 19/256 (7%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F   N+ + L D L +M  +G    +  S    LI  L +   ++EA +  ++M     R
Sbjct: 420 FMNKNSERAL-DLLNEMKNKGME--LDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLR 476

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+   Y  +++A  + G  ++A  LL ++   G +  P+V TY  LI   CK G      
Sbjct: 477 PNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQ--PNVVTYCALIDGLCKAG------ 528

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I+EA   F  M   G  P+V  Y  LIDG CK   + +A+ L ++M  KG   +
Sbjct: 529 -----SIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLD 583

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDF 380
           +V Y S I  +    ++  A  +  KM  +  G+      YT  I   C    + EAR  
Sbjct: 584 KVVYTSLIDGHMKQGDLQGAFALKAKM--IETGLQLDLYCYTCFISGFCNMNMMQEARGV 641

Query: 381 LAELVDGGSVPREYTY 396
           L+E++  G  P +  Y
Sbjct: 642 LSEMIGTGITPDKTAY 657



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 13/177 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G + EA++ F +M++    P+V  Y  +I+  C++G+ +KA  L+ +M   G
Sbjct: 520 LIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKG 579

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                D   YT LI  + K G   G   A++ ++ E           G   D+  Y C I
Sbjct: 580 MSL--DKVVYTSLIDGHMKQGDLQGAF-ALKAKMIET----------GLQLDLYCYTCFI 626

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            G C    ++ A  +  +M   G  P++  YN  IR Y  +  +++A  +  +M+++
Sbjct: 627 SGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEMESV 683



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 21/240 (8%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           +  K L   + D   R N  + TT     ++    + G  +EA+A  +++     +P+V 
Sbjct: 461 DEAKSLLHKMDDCGLRPNTVIYTT-----IMDAFFKAGKESEAVALLHKIPDSGLQPNVV 515

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            Y  +I+ LC+ G+  +A    ++M   G    P+V  YT LI  +CK G          
Sbjct: 516 TYCALIDGLCKAGSIYEAISHFDKMRELGL--DPNVQVYTTLIDGFCKIG---------- 563

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             + +A HL   M+ KG   D V Y  LIDG  K   ++ A  L   M + G   +   Y
Sbjct: 564 -SLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCY 622

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
             FI  +  +N + +A  ++ +M  +  G+ P  ++Y  +I    + G + EA     E+
Sbjct: 623 TCFISGFCNMNMMQEARGVLSEM--IGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEM 680


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 139/302 (46%), Gaps = 47/302 (15%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRC----------------------------- 200
           S V  L+ +L + GL+++A+    R+++ R                              
Sbjct: 129 SVVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFEQ 188

Query: 201 --RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
              P+V+ +N++I+ LC+ G+  +AR LL +M+  G  C PDV TY  LI  Y K G   
Sbjct: 189 LPAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIG--CSPDVVTYNSLIDGYGKCG--- 243

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                    + E   L   M   G  PDVV YN L++  CK  R+ERA   F +M ++G 
Sbjct: 244 --------ELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGV 295

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           + N VT+++F+  +     + +A+++  +M+ +    P   +YT ++   C+AGR+ +A 
Sbjct: 296 MANVVTFSTFVDAFCKNGMVREAMKLFAQMR-MKGMKPNEVTYTCLVDGTCKAGRLDDAL 354

Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIM 438
               E+V  G      TY ++ D L    + +  +D  R   R GI  R  +++    I 
Sbjct: 355 VLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGI--RANELLYTTLIH 412

Query: 439 KH 440
            H
Sbjct: 413 GH 414



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 144/360 (40%), Gaps = 82/360 (22%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           N  TC  + +  AR  + +  W   + +        V T ++  +I  L +EG + EA A
Sbjct: 162 NTRTCNHILLCLARERSSELAWRLFEQLPAPN----VFTFNI--MIDFLCKEGDLAEARA 215

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
              RMK   C PDV  YN +I+   + G   +   L+ +M   G  C PDV TY  L++ 
Sbjct: 216 LLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMR--GCGCRPDVVTYNALVNC 273

Query: 251 YCKYG---------------------------MQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           +CK+G                           +   C+  + R   EA  LF  M  KG 
Sbjct: 274 FCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVR---EAMKLFAQMRMKGM 330

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT------------------- 324
            P+ V Y CL+DG CK  R++ AL L ++M ++G   N VT                   
Sbjct: 331 KPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAED 390

Query: 325 ----------------YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
                           Y + I  + V    ++A+ ++ +M++    +   S Y  +I  L
Sbjct: 391 VFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDV-SLYGALIWGL 449

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS--------LLDDGLRKRI 420
           C   ++ EA+  L ++ + G  P    Y  + DA   A + S        ++D G R  I
Sbjct: 450 CNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNI 509



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 119/287 (41%), Gaps = 31/287 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   ++  + +  +M R G    V T S    +    + G+V EA+  F +M+    +
Sbjct: 274 FCKFGRMERAYSYFAEMKREGVMANVVTFST--FVDAFCKNGMVREAMKLFAQMRMKGMK 331

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+   Y  +++  C+ G  + A  L  +M   G   P +V TYT+L+   CK G      
Sbjct: 332 PNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGV--PLNVVTYTVLVDGLCKEGKVAEAE 389

Query: 262 KAIR---RRIWEANHLFRLMLF---------------------KGFVPDVVAYNCLIDGC 297
              R   R    AN L    L                      KG   DV  Y  LI G 
Sbjct: 390 DVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGL 449

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-P 356
           C   +++ A  L + M++ G  PN V Y + +       +  +AI +++KM  ++ G  P
Sbjct: 450 CNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKM--MDSGFRP 507

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              +Y  ++  LC+AG + EA     ++VD G  P    Y  + D L
Sbjct: 508 NIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGL 554



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 19/234 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA +   +M +   +P+   Y  +++A  +    ++A  LL++M   GFR  P++ TY
Sbjct: 455 LDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFR--PNIVTY 512

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             L+   CK G            I EA   F  M+  G  P+V AY  L+DG CK  R++
Sbjct: 513 CALVDGLCKAG-----------SIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLD 561

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTP 363
           +A+ L D+M  KG   + V   S +  +     +  A  +  KM  +N G+      YT 
Sbjct: 562 KAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKM--INSGLQLDLYGYTC 619

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV---CDALNAAEEPSLLDD 414
            +   C    + EAR+ L+E+++ G  P    Y  +   C  L   EE ++L +
Sbjct: 620 FVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQN 673



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 13/177 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L + G ++EA++ F +M      P+V AY  +++ LC+ G  +KA  LL++M   G
Sbjct: 515 LVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKG 574

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                D    T L+  + K G            + +A  L   M+  G   D+  Y C +
Sbjct: 575 MSL--DNVVCTSLMDGHLKQG-----------NLQDAFALKAKMINSGLQLDLYGYTCFV 621

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            G C    I+ A E+  +M + G  P+ V YN  I     +  +++A  +  +M++L
Sbjct: 622 WGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEMESL 678


>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 643

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 119/257 (46%), Gaps = 29/257 (11%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L++ L ++G V++AL  +  M      P   +YN++I  LC VG+   A  +L  M
Sbjct: 296 TFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSM 355

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAI------------RR 266
           E  G  C P+V TY+ LI  + K G             ++GC+  +            + 
Sbjct: 356 EQHG--CFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKL 413

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
              +A  L   ML +   P+ V +N LI   C   R+ RAL +F +M + GC+PN  TYN
Sbjct: 414 MFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYN 473

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELV 385
             I           A+ M+ +MQ  +HG+  S  +Y  ++  LC+     EA  F+ +++
Sbjct: 474 ELIHGLFREGNCGDALHMVTEMQ--SHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMI 531

Query: 386 DGGSVPREYTYKLVCDA 402
             G  P  +T+  +  A
Sbjct: 532 VQGIQPNAFTFSAIIHA 548



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 22/246 (8%)

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           E +V   +  +  M++    P+V+ YN+++ ALC+      AR +L++M   G  CPPD 
Sbjct: 137 ENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKG--CPPDD 194

Query: 242 YTYTILISSYCKYGMQTGCRKAIRR-------------------RIWEANHLFRLMLFKG 282
            TY  ++S  CK        + +                     R+ E   +   M+ +G
Sbjct: 195 VTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRG 254

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+V+ Y  ++D  CK   +  A  +   M   GC PN VT+ + +R       +  A+
Sbjct: 255 LQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDAL 314

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +M R M       P++ SY  +I  LC  G +  A   L  +   G  P   TY  + D 
Sbjct: 315 DMWRWMV-AEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDG 373

Query: 403 LNAAEE 408
            + A +
Sbjct: 374 FSKAGD 379



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 106/263 (40%), Gaps = 47/263 (17%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
            +S   ++  L  E  + E  +    M     +P+V  Y  +++A C+ G    A  +L 
Sbjct: 224 AASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILA 283

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M + G  C P+V T+T L+      G           R+ +A  ++R M+ +G+ P  V
Sbjct: 284 RMVITG--CTPNVVTFTALVRGLFDDG-----------RVHDALDMWRWMVAEGWAPSTV 330

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           +YN LI G C    ++ A  + + M + GC PN  TY++ I  +S   ++  AI +   M
Sbjct: 331 SYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDM 390

Query: 349 QN----------------------------------LNHGVPTSSSYTPIIHALCEAGRV 374
                                               L +  P + ++  +I +LC+  RV
Sbjct: 391 SRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRV 450

Query: 375 LEARDFLAELVDGGSVPREYTYK 397
             A     E+   G VP   TY 
Sbjct: 451 GRALGVFHEMRRHGCVPNGRTYN 473



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 120/279 (43%), Gaps = 31/279 (11%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
            ++KG    L  M + G    V T S   LI    + G +  A++ +  M +  C+P+V 
Sbjct: 343 GDLKGASSILNSMEQHGCFPNVRTYST--LIDGFSKAGDLGGAISIWNDMSRSGCKPNVV 400

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC---KYGMQTGCRK 262
            Y  +++  C+   FN+A+ L+++M L    CPP+  T+  LI S C   + G   G   
Sbjct: 401 VYTNMVDVFCKKLMFNQAKSLIDKMLLE--NCPPNTVTFNTLIRSLCDCRRVGRALGVFH 458

Query: 263 AIRRR---------------------IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            +RR                        +A H+   M   G    +V YN ++ G C+T 
Sbjct: 459 EMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTR 518

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN-HGVPTSSS 360
               A+     M  +G  PN  T+++ I  Y    E+  A  M+  M  +N H       
Sbjct: 519 MSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCH--RNILV 576

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           YT ++  LC   ++++A  +L +++  G  P   T+ ++
Sbjct: 577 YTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVL 615



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 13/156 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  EG   +AL     M+       +  YN V++ LC+     +A   + +M + G
Sbjct: 475 LIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQG 534

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P+ +T++ +I +YCK G        +R   W    +   M       +++ Y  L+
Sbjct: 535 IQ--PNAFTFSAIIHAYCKEG-------EVRMAAW----MLGAMNVVNCHRNILVYTILM 581

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
              C   ++  A+     M  +G  PN VT+N  +R
Sbjct: 582 AELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVR 617


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 16/232 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFY-RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           ++  L+K L     V EA+     RM +  C PD  +Y +++  LC      +A  LL  
Sbjct: 127 AINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHM 186

Query: 230 M-ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           M +  G RCPP+V +Y+I+I+ +   G           ++ +  +LF  M+ +G  PDVV
Sbjct: 187 MADDHGRRCPPNVVSYSIVINGFFTEG-----------QVDKPYNLFLEMIDRGIPPDVV 235

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y  +IDG CK    +RA  +F  M   G  PN  TYN  I  Y  + +  + ++M+ +M
Sbjct: 236 TYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEM 295

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
                G+ P   +Y  +++ LC+ GR  EAR F   ++  G  P+  TY ++
Sbjct: 296 S--ARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGIL 345



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 121/271 (44%), Gaps = 37/271 (13%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G++++A+  F +M+Q    P+V  Y  +I+ALC++G  + A     QM   G    P++ 
Sbjct: 388 GMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGV--TPNIV 445

Query: 243 TYTILISSYCK-----------YGM--QTGCRKAI-----------RRRIWEANHLFRLM 278
            +  L+   C            Y M  Q  C  A+             R+ E   L  LM
Sbjct: 446 VFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLM 505

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
              G  PD  +Y  LI G C T R + A ++FD M   G  P  VTYN+ +  Y   + I
Sbjct: 506 EHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRI 565

Query: 339 DKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           D A  + R+M  L  GV P   +Y  I+H L +  R  EA++    +++ G+    YTY 
Sbjct: 566 DDAYCLFREM--LRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYN 623

Query: 398 LVCDAL---NAAEEP-----SLLDDGLRKRI 420
           ++ + L   N  +E      SL   GL+  I
Sbjct: 624 IILNGLCKSNCVDEAFKMFQSLCSKGLQLNI 654



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 107/236 (45%), Gaps = 33/236 (13%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+   +N +I  LC VG   + R L++ ME  G R  PD ++YT LIS YC  G      
Sbjct: 477 PNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVR--PDAFSYTPLISGYCLTGRTDEAE 534

Query: 262 KAI------------------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
           K                            RI +A  LFR ML KG  P VV YN ++ G 
Sbjct: 535 KVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL 594

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGV 355
            +T R   A EL+ +M   G   +  TYN  +      N +D+A +M + +  + L   +
Sbjct: 595 FQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNI 654

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
            T   +T +I AL + GR  +A D  A +   G VP   TY+LV  A N  EE SL
Sbjct: 655 IT---FTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLV--AENLIEEGSL 705



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 111/259 (42%), Gaps = 29/259 (11%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG      +  CLI      G   E +     M     +PD Y Y  ++N LC+ G   +
Sbjct: 263 NGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCRE 322

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----MQTGCRKAIRRRIWEANHLFRL- 277
           ARF  + M   G +  P V TY ILI  Y   G    M +     +   +   +H+F + 
Sbjct: 323 ARFFFDSMIRKGIK--PKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIF 380

Query: 278 -------------------MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                              M   G  P+VV Y  LID  CK  R++ A   F+ M  +G 
Sbjct: 381 FSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGV 440

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
            PN V +NS +     V++ ++A E++ +M  L+ G+ P +  +  +I  LC  GRV+E 
Sbjct: 441 TPNIVVFNSLVYGLCTVDKWERAEELVYEM--LDQGICPNAVFFNTLICNLCNVGRVMEG 498

Query: 378 RDFLAELVDGGSVPREYTY 396
           R  +  +   G  P  ++Y
Sbjct: 499 RRLIDLMEHVGVRPDAFSY 517



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 20/231 (8%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC----PPD 240
           +++AL  F  +        V A+N ++ A+ R    + +   +         C     P+
Sbjct: 30  LDDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPN 89

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           + TY+ILI  +C+ G            +      F L+L  G+  D +A N L+ G C  
Sbjct: 90  LCTYSILIGRFCRMG-----------HLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHG 138

Query: 301 YRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG---VP 356
            R+  A++ L   M + GC+P+ V+Y   ++        ++A+E++  M + +HG    P
Sbjct: 139 KRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMAD-DHGRRCPP 197

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
              SY+ +I+     G+V +  +   E++D G  P   TY  V D L  A+
Sbjct: 198 NVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQ 248



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 26/200 (13%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A   F  M +    P V  YN +++ L +   F++A+ L   M   G +C  D+YTY
Sbjct: 565 IDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKC--DIYTY 622

Query: 245 TILISSYCKYG--------MQTGCRKAIRRRIW----------------EANHLFRLMLF 280
            I+++  CK           Q+ C K ++  I                 +A  LF  +  
Sbjct: 623 NIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPA 682

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G VP+VV Y  + +   +   +E    LF  M K G  PN    N+ +R      +I +
Sbjct: 683 NGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISR 742

Query: 341 AIEMMRKMQNLNHGVPTSSS 360
           A   + K+   N  V  S++
Sbjct: 743 AGAYLSKLDERNFSVEASTT 762


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 16/238 (6%)

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
           L+  ++M  F   P++Y  +++IN+ C +     A  +L ++   G +  PD  T+T LI
Sbjct: 81  LSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQ--PDTATFTTLI 138

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
              C  G           +I EA HLF  M+ +GF PDVV Y  LI+G CK      A+ 
Sbjct: 139 RGICVEG-----------KIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIR 187

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
           L   M +K C PN   YN+ I       ++ +A  +  +M  +  G+ P   +Y  +IHA
Sbjct: 188 LLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEM--VTKGISPDIFTYNSLIHA 245

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           LC           L E+VD   +P   ++  V DAL    + +   D + K I+ G+E
Sbjct: 246 LCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVE 303



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 31/251 (12%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L ++  V EA   F  M      PD++ YN +I+ALC +  +     LL +M    
Sbjct: 207 IIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEM--VD 264

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PDV ++  ++ + CK G           ++ EA+ +   M+ +G  P+VV Y  L+
Sbjct: 265 SKIMPDVVSFNTVVDALCKEG-----------KVTEAHDVVDKMIQRGVEPNVVTYTALM 313

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ----- 349
           DG C    ++ A+++FD M  KGC+PN ++YN+ I  Y  +  IDKAI     M      
Sbjct: 314 DGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCY 373

Query: 350 -NLNHGV------------PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            N++  V            P   SY  +I+  C+  R+ +A     E+     +P   TY
Sbjct: 374 LNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTY 433

Query: 397 KLVCDALNAAE 407
             +   L   E
Sbjct: 434 STLIHGLCHVE 444



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 16/234 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G    T++ T LI+ +  EG + EAL  F +M     RPDV  Y  +IN LC+VGN + A
Sbjct: 126 GHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAA 185

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LL  M      C P+V+ Y  +I S CK            R++ EA +LF  M+ KG 
Sbjct: 186 IRLLGSMVQK--NCQPNVFAYNTIIDSLCK-----------DRQVTEAFNLFSEMVTKGI 232

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PD+  YN LI   C     +    L ++M     +P+ V++N+ +       ++ +A +
Sbjct: 233 SPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHD 292

Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           ++ KM  +  GV P   +YT ++   C    + EA      +V  G +P   +Y
Sbjct: 293 VVDKM--IQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISY 344



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 104/218 (47%), Gaps = 14/218 (6%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V  A +   ++ +   +PD   +  +I  +C  G   +A  L ++M   GFR  PDV TY
Sbjct: 112 VGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFR--PDVVTY 169

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
             LI+  CK G  +    AIR        L   M+ K   P+V AYN +ID  CK  ++ 
Sbjct: 170 GTLINGLCKVGNTSA---AIR--------LLGSMVQKNCQPNVFAYNTIIDSLCKDRQVT 218

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
            A  LF +M  KG  P+  TYNS I     + E      ++ +M + +  +P   S+  +
Sbjct: 219 EAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVD-SKIMPDVVSFNTV 277

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + ALC+ G+V EA D + +++  G  P   TY  + D 
Sbjct: 278 VDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDG 315



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 33/238 (13%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-------------------NFNKARF 225
           ++EA+  F  M    C P+V +YN +IN  C++                    N ++A  
Sbjct: 322 MDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVK 381

Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
           + + M   G  C P+V +Y  LI+ YCK            +RI +A +LF  M  +  +P
Sbjct: 382 VFDTMVCKG--CMPNVISYNTLINGYCKI-----------QRIDKAMYLFGEMCRQELIP 428

Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
           D V Y+ LI G C   R++ A+ LF +M     IPN VTY   + Y      + +A+ ++
Sbjct: 429 DTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALL 488

Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + ++  N   P        I  +C AG +  ARD  + L   G  P  +TY ++ + L
Sbjct: 489 KAIEGSNLD-PDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGL 545



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 13/180 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T + + LI  L     + +A+A F+ M      P++  Y ++++ LC+     +A  LL+
Sbjct: 430 TVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLK 489

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            +E  G    PD+    I I   C+ G            +  A  LF  +  KG  PDV 
Sbjct: 490 AIE--GSNLDPDIQVNNIAIDGMCRAG-----------ELEAARDLFSNLSSKGLQPDVW 536

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            Y+ +I+G C+   ++ A +LF +M++ GC  N   YN+  R +   NE  +AI+++++M
Sbjct: 537 TYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEM 596



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 22/208 (10%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM---ELPGFRCPPDV 241
           ++EA+  F  M    C P+V +YN +IN  C++   +KA +L  +M   EL      PD 
Sbjct: 376 MDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELI-----PDT 430

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            TY+ LI   C              R+ +A  LF  M+    +P++V Y  L+D  CK  
Sbjct: 431 VTYSTLIHGLCHV-----------ERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNR 479

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
            +  A+ L   +      P+    N  I       E++ A ++   +   + G+ P   +
Sbjct: 480 YLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLS--SKGLQPDVWT 537

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGG 388
           Y+ +I+ LC  G + EA     E+ + G
Sbjct: 538 YSIMINGLCRRGLLDEASKLFREMDENG 565



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L +   + EA+A    ++     PD+   N+ I+ +CR G    AR L   +   G
Sbjct: 471 LLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKG 530

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PDV+TY+I+I+  C+ G+           + EA+ LFR M   G   +   YN + 
Sbjct: 531 LQ--PDVWTYSIMINGLCRRGL-----------LDEASKLFREMDENGCTLNGCIYNTIT 577

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
            G  +     RA++L  +M  +G   +  T   F++  S
Sbjct: 578 RGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLS 616



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R   ++   D   ++S +G    V T S+  +I  L   GL++EA   F  M +  C  +
Sbjct: 512 RAGELEAARDLFSNLSSKGLQPDVWTYSI--MINGLCRRGLLDEASKLFREMDENGCTLN 569

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              YN +     R    ++A  LL++M   GF    D  T T+ +      G+    ++ 
Sbjct: 570 GCIYNTITRGFLRNNETSRAIQLLQEMVARGF--SADASTMTLFVKMLSDDGLDQSLKQI 627

Query: 264 IR 265
           +R
Sbjct: 628 LR 629


>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 131/272 (48%), Gaps = 27/272 (9%)

Query: 142 FARGNNVKGL---------WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF 192
           + RG  + GL           +LK M  +     VT  +   ++  L ++G+V EA   F
Sbjct: 184 YTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVT--AYNAVVDGLCKDGMVFEAWDLF 241

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
            +M     +PD++ YN +I+ LC    + +A  LL  M   G    PDV T+ ++   + 
Sbjct: 242 SQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIM--PDVQTFNVIGGRFL 299

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           K GM           I  A  +F  M   G   DVV Y+ +I   C   +++ A+E+FD 
Sbjct: 300 KTGM-----------ISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDL 348

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEA 371
           M +KGC+PN VTY S I  +  +  ++KA+  + +M  +N+G+ P   ++  +I   C+A
Sbjct: 349 MIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEM--VNNGLDPNIVTWNTLIGGFCKA 406

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           G+ + A++    +   G +P   T  ++ D L
Sbjct: 407 GKPVAAKELFFVMHKHGQLPDLQTCAIILDGL 438



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 121/258 (46%), Gaps = 21/258 (8%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D LKDM    +       +   +I  L + G  + AL+   +M++  C  DV AYN V++
Sbjct: 172 DHLKDMGYESD-----RYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYNAVVD 226

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+ G   +A  L  QM   G +  PD++TY  LI   C +            R  EA 
Sbjct: 227 GLCKDGMVFEAWDLFSQMTGKGIQ--PDLFTYNCLIHGLCNF-----------DRWKEAA 273

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L   M+ KG +PDV  +N +     KT  I RA  +F  M   G   + VTY+S I  +
Sbjct: 274 PLLANMMRKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVH 333

Query: 333 SVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
            ++N++  A+E+   M  +  G +P   +YT +IH  CE   + +A  FL E+V+ G  P
Sbjct: 334 CMLNQMKDAMEVFDLM--IRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDP 391

Query: 392 REYTYKLVCDALNAAEEP 409
              T+  +      A +P
Sbjct: 392 NIVTWNTLIGGFCKAGKP 409



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 117/256 (45%), Gaps = 21/256 (8%)

Query: 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208
           K ++ F+  M      ++VT SS+  +  +L +   + +A+  F  M +  C P++  Y 
Sbjct: 308 KSIFSFMGHMGIEH--DVVTYSSIIGVHCMLNQ---MKDAMEVFDLMIRKGCLPNIVTYT 362

Query: 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268
            +I+  C + N NKA + L +M   G    P++ T+  LI  +CK G             
Sbjct: 363 SLIHGWCEIKNMNKAMYFLGEMVNNGL--DPNIVTWNTLIGGFCKAGKPVA--------- 411

Query: 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
             A  LF +M   G +PD+     ++DG  K +    A+ LF ++ K     + + Y+  
Sbjct: 412 --AKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSII 469

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDG 387
           +       +++ A+E+   + +   GV     +Y  +I+ LC+ G + +A D L ++ + 
Sbjct: 470 LNGMCSSGKLNDALELFSYLSS--KGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEEN 527

Query: 388 GSVPREYTYKLVCDAL 403
           G  P E TY +    L
Sbjct: 528 GCPPDECTYNVFVQGL 543



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 13/152 (8%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
           +EA++ F  +++     D+  Y++++N +C  G  N A  L   +   G +   DV TY 
Sbjct: 445 SEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKI--DVVTYN 502

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           I+I+  CK G+           + +A  L   M   G  PD   YN  + G  + Y I +
Sbjct: 503 IMINGLCKEGL-----------LDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISK 551

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           + +    M  KG   N  T    I Y+S   E
Sbjct: 552 STKYLMFMKGKGFRANATTTKLLINYFSANKE 583



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 17/197 (8%)

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           FL +M   G +  +VT ++   LI    + G    A   F+ M +    PD+    ++++
Sbjct: 380 FLGEMVNNGLDPNIVTWNT---LIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILD 436

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            L +    ++A  L  ++E        D+  Y+I+++  C  G           ++ +A 
Sbjct: 437 GLFKCHFHSEAMSLFRELE--KMNSDLDIIIYSIILNGMCSSG-----------KLNDAL 483

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            LF  +  KG   DVV YN +I+G CK   ++ A +L   M + GC P+  TYN F++  
Sbjct: 484 ELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGL 543

Query: 333 SVVNEIDKAIEMMRKMQ 349
               EI K+ + +  M+
Sbjct: 544 LRRYEISKSTKYLMFMK 560



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 40/191 (20%)

Query: 274 LFRLMLFKGFVPDVVAY----NCL-------------------------------IDGCC 298
           L + M + G  P+V  +    NCL                               ++G C
Sbjct: 100 LIKHMSYIGVKPNVPTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLC 159

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
               + +A+   D +   G   +R T  + I     V     A+  ++KM+  N  +   
Sbjct: 160 VEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDV- 218

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDD 414
           ++Y  ++  LC+ G V EA D  +++   G  P  +TY      +C+     E   LL +
Sbjct: 219 TAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLAN 278

Query: 415 GLRKRIRDGIE 425
            +RK I   ++
Sbjct: 279 MMRKGIMPDVQ 289


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 135/310 (43%), Gaps = 35/310 (11%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A + +HW+E       N  T  E+      G +++      + M + G   L T  +   
Sbjct: 392 ALKIFHWMEGHGSL-ANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMG--PLPTVVTYNT 448

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI     +G VN A      MK+  C PD + YN +++   + G    A F  ++M   G
Sbjct: 449 LINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECG 508

Query: 235 FRCPPDVYTYTILISSYCKYGM------------QTGCRKAIR------------RRIWE 270
               P+  +YT LI  + K G             + GC   +              R  E
Sbjct: 509 LN--PNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSE 566

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  +   M+ +G +P+V+ Y  LIDG C+  R + A ++F DM K+ C+PN  TY+S I 
Sbjct: 567 AEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLI- 625

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            Y +  E  KA E  R M  +    PT  +Y+ ++  LC  GR  EA   + ++ + G  
Sbjct: 626 -YGLCQE-GKADEAER-MSEIG-CEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFC 681

Query: 391 P-REYTYKLV 399
           P RE  Y L+
Sbjct: 682 PDREIYYSLL 691



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 14/224 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI  L  EG V+EAL     M +    P VY Y + I ALC + +  +A  L+ +M+ 
Sbjct: 272 STLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKK 331

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G  C P+V TYT LIS   + G           ++  A  L+  ML +G VP+ V YN 
Sbjct: 332 RG--CRPNVQTYTALISGLSRLG-----------KLEVAIGLYHKMLKEGLVPNTVTYNA 378

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI+  C   R   AL++F  M   G + N  TYN  I+   +  +I+KA+ +  KM  + 
Sbjct: 379 LINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMG 438

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
             +PT  +Y  +I+     G V  A   L  + + G  P E+TY
Sbjct: 439 -PLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTY 481



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 166/372 (44%), Gaps = 33/372 (8%)

Query: 38  KTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHR----TPLRQRILKKEAYNIANN 93
           K  +   I +V    +S+ +FF+     I ++  ++H       +  R+++   +  A++
Sbjct: 74  KAHHVAEIVAVHKDTESVIQFFYW----ISKRPFYKHNMNCFISMLNRLVRDRVFAPADH 129

Query: 94  VLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWD 153
           + +L   A R+ +++     +  +F + +     F  +  +C  + I  A+   V+G  +
Sbjct: 130 IRILMIKACRNEEEI----RRVADFLNEISGM-GFGFSLYSCNTLLIQLAKFEMVEGARN 184

Query: 154 FLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
             K M   G    L+T ++   LI +L ++G V EA     ++ Q+   PDV+ Y  +I 
Sbjct: 185 LYKQMLNSGIQPSLLTFNT---LINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 241

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             CR  N + A  + ++M   G  C P+  TY+ LI+  C  G           R+ EA 
Sbjct: 242 GHCRNRNLDLAFGVFDRMVKEG--CDPNSVTYSTLINGLCNEG-----------RVDEAL 288

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +   M+ KG  P V  Y   I   C     E A+EL   M K+GC PN  TY + I   
Sbjct: 289 DMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGL 348

Query: 333 SVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           S + +++ AI +  KM  L  G VP + +Y  +I+ LC  GR   A      +   GS+ 
Sbjct: 349 SRLGKLEVAIGLYHKM--LKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLA 406

Query: 392 REYTYKLVCDAL 403
              TY  +   L
Sbjct: 407 NTQTYNEIIKGL 418



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 23/253 (9%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S T LI    ++G V+ AL+   RM++  C P+V +YN VIN L +   F++A  + ++M
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 574

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI----RRRIWEANHLFRLMLFK----- 281
              G    P+V TYT LI   C+ G      K      +R+     + +  +++      
Sbjct: 575 VEQGLL--PNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEG 632

Query: 282 -----------GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
                      G  P +  Y+ L+ G C+  R   A +L  DM ++G  P+R  Y S + 
Sbjct: 633 KADEAERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLI 692

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            +    E+D A+++   ++     +   S Y  +I ALC+AG+V EA+     +++    
Sbjct: 693 AHCKNLEVDHALKIFHSIEAKGFQLHL-SIYRALICALCKAGQVEEAQALFDNMLEKEWN 751

Query: 391 PREYTYKLVCDAL 403
             E  + ++ D L
Sbjct: 752 ADEIVWTVLVDGL 764



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 114/269 (42%), Gaps = 20/269 (7%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M +RG    V T   T LI  L   G +  A+  +++M +    P+   YN +IN LC  
Sbjct: 329 MKKRGCRPNVQT--YTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVG 386

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G F+ A  +   ME  G     +  TY  +I   C  G            I +A  LF  
Sbjct: 387 GRFSTALKIFHWME--GHGSLANTQTYNEIIKGLCLGG-----------DIEKAMVLFEK 433

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           ML  G +P VV YN LI+G      +  A  L D M + GC P+  TYN  +  +S   +
Sbjct: 434 MLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGK 493

Query: 338 IDKAIEMMRKMQ--NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
           ++ A    ++M    LN   P   SYT +I    + G+V  A   L  + + G  P   +
Sbjct: 494 LESASFYFQEMVECGLN---PNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVES 550

Query: 396 YKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           Y  V + L+     S  +    K +  G+
Sbjct: 551 YNAVINGLSKENRFSEAEKICDKMVEQGL 579



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 16/203 (7%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
            +Y+ N ++  L +      AR L +QM   G +  P + T+  LI+   K G       
Sbjct: 162 SLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQ--PSLLTFNTLINILSKKG------- 212

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               ++ EA  +   +      PDV  Y  LI G C+   ++ A  +FD M K+GC PN 
Sbjct: 213 ----KVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNS 268

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           VTY++ I        +D+A++M+ +M  +  G+ PT  +YT  I ALC      EA + +
Sbjct: 269 VTYSTLINGLCNEGRVDEALDMLEEM--IEKGIEPTVYTYTLPITALCAIEHEEEAIELV 326

Query: 382 AELVDGGSVPREYTYKLVCDALN 404
           A +   G  P   TY  +   L+
Sbjct: 327 ARMKKRGCRPNVQTYTALISGLS 349



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 18/212 (8%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI  L +EG  +EA     RM +  C P +  Y+ +++ LCR G F +A  L++ M+ 
Sbjct: 622 SSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKE 677

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            GF CP     Y++LI+ +CK              +  A  +F  +  KGF   +  Y  
Sbjct: 678 RGF-CPDREIYYSLLIA-HCK-----------NLEVDHALKIFHSIEAKGFQLHLSIYRA 724

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI   CK  ++E A  LFD+M +K    + + +   +       E+D  ++++  M++ N
Sbjct: 725 LICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKN 784

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
              P   +Y  +   L   G+ +E+     +L
Sbjct: 785 F-TPNIQTYVILGRELSRIGKSIESEPLADKL 815


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 123/266 (46%), Gaps = 16/266 (6%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFY-RMKQFRCRPDVYAYNVVINALCRVGNFN 221
           +G  V    +  L+K L +   + EA+     RM +  C PDV +YN ++   C      
Sbjct: 123 SGWRVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAE 182

Query: 222 KARFLLEQM-ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           +A  LL  M +  G  CPP+V +Y  +I+ +   G           ++ +A +LF  M+ 
Sbjct: 183 EALELLHMMADSQGRSCPPNVVSYATVINGFFTEG-----------QVDKAYNLFLEMMD 231

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G  P+VV Y  +IDG CK   ++RA  +F  M  KG  P+  TYN  I  Y  + +  +
Sbjct: 232 RGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKE 291

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            + M+ +M    HG+ P   +Y  +++ LC  GR  EAR F   ++  G  P    Y ++
Sbjct: 292 VVRMLEEMS--AHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGIL 349

Query: 400 CDALNAAEEPSLLDDGLRKRIRDGIE 425
                     S + D L   + +G+ 
Sbjct: 350 IHGYATKGALSEMHDLLNLMVENGLS 375



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 16/231 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G V++A+  F +M      P+++ +N ++  LC V  + KA+    +M   G
Sbjct: 419 LIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQG 478

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            R  PDV  +  ++ + C  G           ++ +A  L  LM   G  PDV++Y  LI
Sbjct: 479 IR--PDVVFFNTILCNLCTKG-----------QVMKAQRLIDLMERVGTRPDVISYTTLI 525

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   RI+ A +  D M   G  P+  TYN+ +  Y     ID A  + R+M  L +G
Sbjct: 526 GGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREM--LRNG 583

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           + P   +Y+ I+H L    R  EA++    ++  G     + Y ++ + L+
Sbjct: 584 ITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLS 634



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 108/248 (43%), Gaps = 29/248 (11%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CLI      G   E +     M     +PD Y Y  ++N LC  G   +ARF  + M   
Sbjct: 278 CLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRK 337

Query: 234 GFRCPPDVYTYTILISSYCKYG------------MQTGCRK------------AIRRRIW 269
           G +  P+V  Y ILI  Y   G            ++ G               A +  I 
Sbjct: 338 GIK--PNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMID 395

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA H+F  M  +G  PDVV +  LID  CK  R++ A+  F+ M  +G  PN   +NS +
Sbjct: 396 EAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLV 455

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
                V++ +KA E   +M  LN G+ P    +  I+  LC  G+V++A+  +  +   G
Sbjct: 456 YGLCTVDKWEKAKEFYFEM--LNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVG 513

Query: 389 SVPREYTY 396
           + P   +Y
Sbjct: 514 TRPDVISY 521



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 108/225 (48%), Gaps = 14/225 (6%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L  +G V +A      M++   RPDV +Y  +I   C VG  ++A   L+ M   G +  
Sbjct: 493 LCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLK-- 550

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD +TY  L+  YC+ G           RI +A  +FR ML  G  P VV Y+ ++ G  
Sbjct: 551 PDEWTYNTLLHGYCRAG-----------RIDDAYGVFREMLRNGITPGVVTYSTILHGLF 599

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
            T R   A EL+ +M   G   N   YN  +   S  N +D+A ++ + + + +  +   
Sbjct: 600 TTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEI- 658

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +++  +I AL ++GR  +A    A +   G VP  +TY L+ + L
Sbjct: 659 TTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENL 703



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 92/194 (47%), Gaps = 16/194 (8%)

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
           +  PD+ TY+ILI  +C+ G           R+      F L+L  G+  + +  N L+ 
Sbjct: 89  KVTPDLCTYSILIGCFCRMG-----------RLEHGFATFGLILKSGWRVNNIVINQLLK 137

Query: 296 GCCKTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           G C   R+  A++ L   M + GC P+ V+YN+ ++ +      ++A+E++  M + + G
Sbjct: 138 GLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMAD-SQG 196

Query: 355 ---VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
               P   SY  +I+     G+V +A +   E++D G  P   TY  V D L  A+    
Sbjct: 197 RSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDR 256

Query: 412 LDDGLRKRIRDGIE 425
            +   ++ I  G++
Sbjct: 257 AEGVFQQMIDKGVK 270



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 15/219 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + R   +   +   ++M R G    V T S   ++  L      +EA   +  M     +
Sbjct: 563 YCRAGRIDDAYGVFREMLRNGITPGVVTYST--ILHGLFTTRRFSEAKELYLNMITSGKQ 620

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            +++ YN+++N L +    ++A  L + +    F+   ++ T+ I+I +  K G      
Sbjct: 621 WNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQL--EITTFNIMIGALFKSG------ 672

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R  +A HLF  +   G VPDV  Y  + +   +   +E   +LF  M K G  PN
Sbjct: 673 -----RNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPN 727

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
               N+ +R      +I +A   + K+   N  +  S++
Sbjct: 728 SRMLNALVRRLLHRGDITRAGAYLSKLDEKNFSLEASTT 766


>gi|226492629|ref|NP_001143148.1| uncharacterized protein LOC100275629 [Zea mays]
 gi|195615066|gb|ACG29363.1| hypothetical protein [Zea mays]
          Length = 478

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 118/245 (48%), Gaps = 18/245 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L DM   G      T +V            + +AL  F  +     +PDV +YN +I+ 
Sbjct: 151 LLADMRAAGFAPTAATYNVLLKAHCSDAAAHIEDALRLFRNIP----KPDVCSYNTIIDG 206

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LCR G   +A  +  +M   G    P V TYT +I     +  + GC         +A  
Sbjct: 207 LCRRGRLAEALDMFSEMV--GKCIAPTVVTYTTVI----HWLAREGCFD-------DALK 253

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +F  M  +G  P++V Y+ LIDG CK  R   ALEL D M K+  +PN +TY+S I    
Sbjct: 254 IFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMVKEKKLPNTITYSSVIDGLC 313

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             + + +A+E++ +M+ L    P +  +  +I  LC+AGR +EA ++L E+V  G  P  
Sbjct: 314 KEHMLSEAMEVLDRMR-LQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNR 372

Query: 394 YTYKL 398
            T+ L
Sbjct: 373 VTWSL 377



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 18/199 (9%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           +YN V+ AL    +   AR LL  M   GF   P   TY +L+ ++C             
Sbjct: 131 SYNAVLAALVAHSHLPLARSLLADMRAAGF--APTAATYNVLLKAHCSDAAA-------- 180

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             I +A  LFR +      PDV +YN +IDG C+  R+  AL++F +M  K   P  VTY
Sbjct: 181 -HIEDALRLFRNIP----KPDVCSYNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTY 235

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            + I + +     D A+++  +M     GV P   +Y+ +I  LC+ GR   A + L  +
Sbjct: 236 TTVIHWLAREGCFDDALKIFHEMGR--RGVSPNLVTYSSLIDGLCKGGRATSALELLDRM 293

Query: 385 VDGGSVPREYTYKLVCDAL 403
           V    +P   TY  V D L
Sbjct: 294 VKEKKLPNTITYSSVIDGL 312



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 13/168 (7%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T +I  L  EG  ++AL  F+ M +    P++  Y+ +I+ LC+ G    A  LL
Sbjct: 231 TVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELL 290

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M     +  P+  TY+ +I   CK  M +           EA  +   M  +G  PD 
Sbjct: 291 DRMV--KEKKLPNTITYSSVIDGLCKEHMLS-----------EAMEVLDRMRLQGRKPDA 337

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             +  LI G C   R   A    D+M   G  PNRVT++   R  + V
Sbjct: 338 GLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNRVTWSLHARINNTV 385



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 61/154 (39%), Gaps = 11/154 (7%)

Query: 267 RIWEANHLFRLMLFKGFVPDVV-AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           R   A HLFR       +P    +YN ++        +  A  L  DM   G  P   TY
Sbjct: 108 RPLAALHLFRSAPSDLALPHSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATY 167

Query: 326 NSFIRYY--SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           N  ++ +       I+ A+ + R +       P   SY  II  LC  GR+ EA D  +E
Sbjct: 168 NVLLKAHCSDAAAHIEDALRLFRNIPK-----PDVCSYNTIIDGLCRRGRLAEALDMFSE 222

Query: 384 LVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           +V     P   TY  V   L  A E    DD L+
Sbjct: 223 MVGKCIAPTVVTYTTVIHWL--ARE-GCFDDALK 253



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 84/218 (38%), Gaps = 58/218 (26%)

Query: 157 DMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           +M RRG +  LVT SS   LI  L + G    AL    RM + +  P+   Y+ VI+ LC
Sbjct: 257 EMGRRGVSPNLVTYSS---LIDGLCKGGRATSALELLDRMVKEKKLPNTITYSSVIDGLC 313

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
           +    ++A  +L++M L G +  PD   +  LI   C  G           R  EA +  
Sbjct: 314 KEHMLSEAMEVLDRMRLQGRK--PDAGLFGKLIVGLCDAG-----------RAVEAANYL 360

Query: 276 RLMLFKGFVPDVVAY-------NCLIDGCCKTYRIERALELFD----------------- 311
             M+  G  P+ V +       N ++   C    + RA +++                  
Sbjct: 361 DEMVLAGIEPNRVTWSLHARINNTVLTALCDKGELGRAFQVYQSTRTRSISTDPTTFHLL 420

Query: 312 -----------------DMNKKGCIPNRVTYNSFIRYY 332
                            DM  + CIP R T+++ I  Y
Sbjct: 421 VESFSKNNIEKAARVVLDMLSERCIPERETWDAIISGY 458


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 125/260 (48%), Gaps = 25/260 (9%)

Query: 175 LIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+K L ++   +EA+     RM    C P+V++Y +++  LC      +A  LL  M + 
Sbjct: 132 LLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVA 191

Query: 234 -----GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
                G+  PPDV +Y  +I+   + G          R++  A HLF  ML +G  PDVV
Sbjct: 192 DDTRGGY--PPDVVSYNTVINGLLREG----------RQLDTAYHLFDQMLDQGLSPDVV 239

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN +I    K   +++A  +   M K G +PNR+T+NS +  Y    + + AI + ++M
Sbjct: 240 TYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRM 299

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
                GV P   +Y  ++  LC+ GR +EAR     +V  G  P   TY  +      A 
Sbjct: 300 --CRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGY--AT 355

Query: 408 EPSL--LDDGLRKRIRDGIE 425
           E SL  +   L   +R+GI+
Sbjct: 356 EGSLVKMHHLLDMMVRNGIQ 375



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 122/254 (48%), Gaps = 16/254 (6%)

Query: 152 WDFLKDMSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
           WD  ++++    G  +  +++    L+  L +EG+V  A   F  M +   + DV  YN 
Sbjct: 464 WDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNT 523

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +I+  C  G  ++A  LLE M L G +  P+  TY  +I+ YCK G           RI 
Sbjct: 524 LIDGYCLHGKVDEAAKLLEGMVLDGVK--PNEVTYNTMINGYCKNG-----------RIE 570

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A  LFR M  KG  P +V Y+ ++ G  +  R   A EL+  M K G   +  TYN  +
Sbjct: 571 DAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIIL 630

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                 N  D A+ + + +  ++  +  + ++  +I AL + GR  EA+D  A L+  G 
Sbjct: 631 LGLCQNNCTDDALRIFQNLYLIDFHLE-NRTFNIMIDALLKGGRHDEAKDLFASLLARGL 689

Query: 390 VPREYTYKLVCDAL 403
           VP   TY L+  +L
Sbjct: 690 VPNVVTYWLMMKSL 703



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 126/263 (47%), Gaps = 25/263 (9%)

Query: 158 MSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           M R+G N + VT   V   + ++G+   V++A+A F R+      PD   +  +I+ LC 
Sbjct: 404 MRRQGLNPDTVTYGIVMDALCMVGK---VDDAMAQFGRLISEGLTPDAVVFRNLIHGLCA 460

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
              ++KA  L  +M   G  CP +++ +  L++  CK GM           +  A ++F 
Sbjct: 461 RDKWDKAEELAVEMIGRGI-CPNNIF-FNTLLNHLCKEGM-----------VARAKNIFD 507

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
           LM+      DV+ YN LIDG C   +++ A +L + M   G  PN VTYN+ I  Y    
Sbjct: 508 LMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNG 567

Query: 337 EIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
            I+ A  + R+M  + +N G+ T   Y+ I+  L +A R   A++    ++  G      
Sbjct: 568 RIEDAFSLFRQMASKGVNPGIVT---YSTILQGLFQARRTAAAKELYLWMIKSGIKFDIG 624

Query: 395 TYKLVCDALNAAEEPSLLDDGLR 417
           TY ++   L    + +  DD LR
Sbjct: 625 TYNIILLGLC---QNNCTDDALR 644



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 114/253 (45%), Gaps = 16/253 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G V++A+  F +M++    PD   Y +V++ALC VG  + A     ++   G
Sbjct: 384 LIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEG 443

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE-ANHLFRLMLFKGFVPDVVAYNCL 293
               PD   +  LI   C             R  W+ A  L   M+ +G  P+ + +N L
Sbjct: 444 L--TPDAVVFRNLIHGLCA------------RDKWDKAEELAVEMIGRGICPNNIFFNTL 489

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ++  CK   + RA  +FD M +     + +TYN+ I  Y +  ++D+A +++  M  L+ 
Sbjct: 490 LNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMV-LDG 548

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
             P   +Y  +I+  C+ GR+ +A     ++   G  P   TY  +   L  A   +   
Sbjct: 549 VKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAK 608

Query: 414 DGLRKRIRDGIEY 426
           +     I+ GI++
Sbjct: 609 ELYLWMIKSGIKF 621



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 118/274 (43%), Gaps = 57/274 (20%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALAT--FYRMKQF---RCRPDVYAYNVVINALCRVGNFNK 222
           TTSS+  L + L +    + A+A   F RM      +  P++  Y+VVI+   RVG+ + 
Sbjct: 50  TTSSIVDLNRALSDAARHSPAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDL 109

Query: 223 ARFLL-----------------------------EQME-----LPGFRCPPDVYTYTILI 248
           A   L                             E M+     +P   C P+V++YTIL+
Sbjct: 110 AFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILL 169

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-----GFVPDVVAYNCLIDGCCKTYR- 302
              C              R  +A HL   M+       G+ PDVV+YN +I+G  +  R 
Sbjct: 170 KGLCD-----------ENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQ 218

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           ++ A  LFD M  +G  P+ VTYNS I   S    +DKA  ++ +M   N  +P   ++ 
Sbjct: 219 LDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVK-NGAMPNRITHN 277

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            ++H  C +G+  +A      +   G  P  +TY
Sbjct: 278 SLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTY 311



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 110/242 (45%), Gaps = 16/242 (6%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG +    +   L+      G  N+A+  F RM +    PDV+ YN ++  LC+ G   +
Sbjct: 267 NGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSME 326

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           AR + + M   G +  P+  TY  L+  Y   G            + + +HL  +M+  G
Sbjct: 327 ARKIFDSMVKRGHK--PNSATYGTLLHGYATEG-----------SLVKMHHLLDMMVRNG 373

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PD   +N LI    K  +++ A+ LF  M ++G  P+ VTY   +    +V ++D A+
Sbjct: 374 IQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAM 433

Query: 343 EMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
               ++  ++ G+ P +  +  +IH LC   +  +A +   E++  G  P    +  + +
Sbjct: 434 AQFGRL--ISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLN 491

Query: 402 AL 403
            L
Sbjct: 492 HL 493



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 16/232 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +  +L E   ++ A   F +M      PDV  YN +I+AL +    +KA  +L +M  
Sbjct: 207 TVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVK 266

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P+  T+  L+  YC  G              +A  +F+ M   G  PDV  YN 
Sbjct: 267 NG--AMPNRITHNSLLHGYCSSGKPN-----------DAIGVFKRMCRDGVEPDVFTYNT 313

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+   CK  R   A ++FD M K+G  PN  TY + +  Y+    + K   ++  M  + 
Sbjct: 314 LMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMM--VR 371

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +G+ P    +  +I    + G+V +A    +++   G  P   TY +V DAL
Sbjct: 372 NGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDAL 423



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 107/244 (43%), Gaps = 19/244 (7%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEAL 189
           NE+T   M   + +   ++  +   + M+ +G N  +VT S++   ++ L +      A 
Sbjct: 552 NEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTI---LQGLFQARRTAAAK 608

Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
             +  M +   + D+  YN+++  LC+    + A  + + + L  F    +  T+ I+I 
Sbjct: 609 ELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHL--ENRTFNIMID 666

Query: 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
           +  K G           R  EA  LF  +L +G VP+VV Y  ++    +   +E   +L
Sbjct: 667 ALLKGG-----------RHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDL 715

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
           F  + K GC  N    N+ +       E+ KA   + K+   N  +  S++ + ++  L 
Sbjct: 716 FLSLEKNGCTANSRMLNALVGKLLQKGEVRKAGVYLSKIDENNFSLEASTAESLVL--LV 773

Query: 370 EAGR 373
            +G+
Sbjct: 774 SSGK 777



 Score = 39.7 bits (91), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 10/150 (6%)

Query: 263 AIRRRIWEANHLFRLMLFKG---FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           A R     A  LFR M+        P+++ Y+ +ID C +   ++ A      + + G  
Sbjct: 64  AARHSPAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWT 123

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEM-MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
              +T++  ++         +A+++ +R+M  L    P   SYT ++  LC+  R  +A 
Sbjct: 124 AEAITFSPLLKALCDKKRTSEAMDIALRRMPVLG-CTPNVFSYTILLKGLCDENRSQQAL 182

Query: 379 DFL-----AELVDGGSVPREYTYKLVCDAL 403
             L     A+   GG  P   +Y  V + L
Sbjct: 183 HLLHTMMVADDTRGGYPPDVVSYNTVINGL 212


>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
          Length = 481

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 164/381 (43%), Gaps = 44/381 (11%)

Query: 45  IESVADVLKSIPRFFFQSPR----SIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPA 100
           +  VADV K+I +    SP+    S   Q+G R    + Q +++    ++ N     G  
Sbjct: 29  VRDVADVAKNISKVLMSSPQLVLDSALDQSGLR----VSQEVVE----DVLNRFRNAGLL 80

Query: 101 AYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSR 160
            YR              F+ W E+   + H+      M    A+    K +WD +  M +
Sbjct: 81  TYR--------------FFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRK 126

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           +   +++   +   +++       V+EA+  F  M+++   P++ A+N +++ALC+  N 
Sbjct: 127 K---KMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNV 183

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            KA+ + E M     R  PD  TY+IL+  + K              + +A  +FR M+ 
Sbjct: 184 RKAQEVFENMR---DRFTPDSKTYSILLEGWGK-----------EPNLPKAREVFREMID 229

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  PD+V Y+ ++D  CK  R++ AL +   M+   C P    Y+  +  Y   N +++
Sbjct: 230 AGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEE 289

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A++   +M+         + +  +I A C+A R+      L E+   G  P   +  ++ 
Sbjct: 290 AVDTFLEMERSGMKADV-AVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIIL 348

Query: 401 DALNAAEEPSLLDDGLRKRIR 421
             L    E     D  RK I+
Sbjct: 349 RHLIERGEKDEAFDVFRKMIK 369



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 43/190 (22%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           TT   + L+   G E  + EA+ TF  M++   + DV  +N +I A C+         +L
Sbjct: 270 TTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVL 329

Query: 228 EQMELPG---------------------------FR-----CPPDVYTYTILISSYCKYG 255
           ++M+  G                           FR     C PD  TYT++I  +C+  
Sbjct: 330 KEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEPDADTYTMVIKMFCE-- 387

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                    ++ +  A+ +++ M  KG  P +  ++ LI+G C+    ++A  L ++M +
Sbjct: 388 ---------KKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIE 438

Query: 316 KGCIPNRVTY 325
            G  P+ VT+
Sbjct: 439 MGIRPSGVTF 448


>gi|255660894|gb|ACU25616.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 481

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 135/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G++G+V E++  F +M++      + +YN +   + R G +  A+    +M   
Sbjct: 85  MMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++   N  F  M  +   PDVV YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETXNRFFEDMKSREISPDVVTYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTD 290



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 27/225 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--MMIDSYGKQGIVQESVKMFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  + I            R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
               F+DM  +   P+ VTYN+ I  Y  V ++++A +   +M+  N   PT  +YT +I
Sbjct: 169 XNRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
                  +V +A   + E+   G  P   TY  +   L  AE+ S
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMS 272



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS+CK G            +  A  + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLISSHCKSG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGVLIENFCKVGQYDKAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P I  LC  G+  +A   + +L   G
Sbjct: 362 QSTL-HLEP--SAYNPXIEYLCNNGQAXKAETLVRQLXKLG 399



 Score = 42.0 bits (97), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 73/197 (37%), Gaps = 19/197 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    + G ++ A      M +     +   Y V+I   C+VG ++KA  LL+++    
Sbjct: 297 LISSHCKSGNLDAAADVLKAMIRLSVPTEAGHYGVLIENFCKVGQYDKAVKLLDKLIEKD 356

Query: 235 FRCPP------DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
               P      +   Y   I   C  G        +R+            L K  V D  
Sbjct: 357 IILRPQSTLHLEPSAYNPXIEYLCNNGQAXKAETLVRQ------------LXKLGVQDPT 404

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           A N LI G  +    + A EL   M ++     +  YNS ++ Y   NE   A   +  M
Sbjct: 405 ALNTLIRGXSQEGSPDSAFELLKIMLRRKVDSEKSAYNSLVQSYLKKNEPXDAKAALDSM 464

Query: 349 QNLNHGVPTSSSYTPII 365
              +H +P S  +  ++
Sbjct: 465 IENDH-LPDSXLFRSVM 480


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 132/328 (40%), Gaps = 64/328 (19%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A E++  +     F H  +T + M    A    +  +   L+ M   G      + S   
Sbjct: 59  ALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEG-----ISCSEDL 113

Query: 175 LIKVLGE---EGLVNEALATFYRMKQFRCRP----------------------------- 202
            I V+G     G   +AL TFYRM+ FR +P                             
Sbjct: 114 FISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMK 173

Query: 203 ------DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
                 +V+ YN+++ ALC+    + A  LL +M   G  C PD  +YT LISS CK G 
Sbjct: 174 KDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKG--CDPDEVSYTTLISSLCKLG- 230

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                     ++ EA  L        F P V  YN LI+G CK Y  E A +L D+M  K
Sbjct: 231 ----------KVKEARELAM-----SFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNK 275

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVL 375
           G  PN ++Y + I   S    ++ ++ ++ KM     G  P   ++T +I      G   
Sbjct: 276 GIDPNVISYTTIINALSDAGNVELSLAVLAKM--FARGCSPNLHTFTSLIKGFFLKGGSH 333

Query: 376 EARDFLAELVDGGSVPREYTYKLVCDAL 403
           EA DF   ++  G VP    Y  +   L
Sbjct: 334 EALDFWDRMIREGVVPNVVAYNALMHGL 361



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 120/266 (45%), Gaps = 47/266 (17%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LIK    +G  +EAL  + RM +    P+V AYN +++ LC   +   A  +  QM
Sbjct: 318 TFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQM 377

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E+ G  C P+V TY+ LI  Y K G   G           A+ ++  M+  G  P+VVAY
Sbjct: 378 EING--CCPNVRTYSALIDGYAKAGDLDG-----------ASEVWNWMITHGCHPNVVAY 424

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
            C++D  C+     +A  L ++M  + C PN VT+N+FI+       +D AI++  +M N
Sbjct: 425 TCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGN 484

Query: 351 LNHGVPTSS----------------------------------SYTPIIHALCEAGRVLE 376
                 T++                                  +Y  II+  C AG + E
Sbjct: 485 SGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGE 544

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDA 402
           A + L ++V  G+ P   T  +V DA
Sbjct: 545 ALELLGKMVVRGTKPDAITVNIVIDA 570



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 101/234 (43%), Gaps = 14/234 (5%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG      + + LI    + G ++ A   +  M    C P+V AY  +++ LCR   FN+
Sbjct: 380 NGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQ 439

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  L+E M++    CPP+  T+   I   C  G           R+  A  +F  M   G
Sbjct: 440 AYCLIENMQVE--NCPPNTVTFNTFIKGLCGSG-----------RVDWAIKVFDQMGNSG 486

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             P+   YN L+D   K  R   A  L  DM  +G   N VTYN+ I  Y     + +A+
Sbjct: 487 CFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEAL 546

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           E++ KM  +    P + +   +I A C+ G+V  A   +  L  G   P    Y
Sbjct: 547 ELLGKMV-VRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAY 599



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 37/259 (14%)

Query: 175 LIKVLGEEGLVNEALATFYRM---KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
           ++K L  E  +  AL  F  +   K F+  P    Y ++I  L      +  ++LL+QM+
Sbjct: 46  VLKRLKHEHDITLALEYFKSIANSKSFKHTP--LTYQMMIEKLASEREMDCVQYLLQQMK 103

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------------------------R 267
           L G  C  D++    +I SY + G      K   R                        R
Sbjct: 104 LEGISCSEDLFIS--VIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENR 161

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
               N ++  M   G  P+V  YN L+   CK  R++ A +L  +M+ KGC P+ V+Y +
Sbjct: 162 FQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTT 221

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I     + ++ +A E+           P+   Y  +I+ +C+     EA   L E+++ 
Sbjct: 222 LISSLCKLGKVKEARELAMSF------TPSVPVYNALINGVCKEYTFEEAFQLLDEMMNK 275

Query: 388 GSVPREYTYKLVCDALNAA 406
           G  P   +Y  + +AL+ A
Sbjct: 276 GIDPNVISYTTIINALSDA 294



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 16/221 (7%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +    IK L   G V+ A+  F +M    C P+   YN ++++L +   F +A  L++
Sbjct: 456 TVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVK 515

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            ME  G     ++ TY  +I  YC  GM           + EA  L   M+ +G  PD +
Sbjct: 516 DMEHRGIEL--NLVTYNTIIYGYCCAGM-----------LGEALELLGKMVVRGTKPDAI 562

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
             N +ID  CK  ++  A++L D ++     P+ + Y S I        +++AI  +R+M
Sbjct: 563 TVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRM 622

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
             L+ G+ P  +++  ++  L        A  FL  ++  G
Sbjct: 623 --LSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDAVLGSG 661


>gi|255660934|gb|ACU25636.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 484

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 134/281 (47%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDLWV 84

Query: 175 L-IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L I   G+ G+V E++  F +M++      + +Y+ +   + R G +  A+    +M   
Sbjct: 85  LMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDV+ YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLCG-----------KVETANRFFEDMKXREISPDVITYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  +IE A + F +M  +   P  VTY + I+ Y  V+ +D A+ ++ +M+    
Sbjct: 192 INGYYRVKKIEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALTLLEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EA   L E+VD    P++
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEASGILKEMVDKYIAPKD 290



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 110/277 (39%), Gaps = 25/277 (9%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++A  +L
Sbjct: 219 TVVTYTTLIKGYVSVDRVDDALTLLEEMKGFGIKPNAITYSTLLPGLCNAEKMSEASGIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LIS  CK G            +  A  + + M+      + 
Sbjct: 279 KEM-VDKYIAPKDNSIFLRLISGQCKAG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCI--PNR------VTYNSFIRYYSVVNEID 339
             Y  LI+  CK    E+A++L D + +K  +  P          YN  + Y     +  
Sbjct: 327 GHYGVLIENYCKAGDYEKAIKLLDKLIEKDIVLRPQSSLHMEPSAYNPLVEYLCNNGQTA 386

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           KA  ++R++  L  GV   ++   +I    + G    A + L  ++       + +Y  +
Sbjct: 387 KAETLVRQLMKL--GVQDPTALNTLIRGHSQEGSPDSAFELLKIMLRRKIDSEKSSYDSL 444

Query: 400 CDALNAAEEPSLLDDGLRKRIRDG---IEYRFRQVMK 433
             +     EP+     L   I +G       FR VM+
Sbjct: 445 VQSYLKKSEPADAKAALDSMIENGHLPDSSLFRSVME 481


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 126/266 (47%), Gaps = 16/266 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +  R  +   +W   KD+ RRG      T S   +I     +G ++   +  + M +F C
Sbjct: 240 LLLRVGDYGNVWKLFKDVIRRGPQPCKYTFS--GIILGFCRKGCIHLGESLLHLMPKFHC 297

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+ +AYN+VINA C  G  + A      M   G  C P V T+  +I+++CK G     
Sbjct: 298 EPNAFAYNIVINACCIRGRTSDALAWFNLMIERG--CNPTVVTFNTVINAFCKEG----- 350

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                  + EA  LF  +   GF P+ + YN L++G  K   I++A  L+++M KKG  P
Sbjct: 351 ------NVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAP 404

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           + +T+N  +  +      +    +++ +  L   +P  S +   +  LC AGR+ EA +F
Sbjct: 405 DGITFNILVSGHYKYGREEDGDRLLKDISVLGL-LPDRSLFDISVSGLCWAGRLDEAMEF 463

Query: 381 LAELVDGGSVPREYTYKLVCDALNAA 406
           L ++++ G  P    +  V  A + A
Sbjct: 464 LMDMLEKGLSPSIIAFNSVIAAYSQA 489



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 119/258 (46%), Gaps = 17/258 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           RG     L  F   + R  N  +VT ++V   I    +EG V EA   F  +K+    P+
Sbjct: 314 RGRTSDALAWFNLMIERGCNPTVVTFNTV---INAFCKEGNVVEARKLFDGLKEMGFSPN 370

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              YN ++N   ++   ++A  L E+M   G    PD  T+ IL+S + KYG        
Sbjct: 371 AIMYNTLMNGYVKMREIDQANMLYEEMRKKGI--APDGITFNILVSGHYKYG-------- 420

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              R  + + L + +   G +PD   ++  + G C   R++ A+E   DM +KG  P+ +
Sbjct: 421 ---REEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSII 477

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
            +NS I  YS     DKA E  + M +     P+ S+ + ++  L   GR+ EA + + +
Sbjct: 478 AFNSVIAAYSQAGLEDKAFEAYKLMVHFGL-TPSPSTCSSLLMGLSINGRLQEATELIGQ 536

Query: 384 LVDGGSVPREYTYKLVCD 401
           +++ G       + ++ D
Sbjct: 537 MIEKGLSVNNMAFTVLLD 554



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 128/284 (45%), Gaps = 17/284 (5%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           +KA E Y  +  F     +  TC  + +  +    ++   + +  M  +G    V   + 
Sbjct: 493 DKAFEAYKLMVHF-GLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLS--VNNMAF 549

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+    + G V  A + +  M++    PDV A++  I+ L + G   +A  +  +M  
Sbjct: 550 TVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLR 609

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P+ + Y  LI  +CK G           ++ EA  L ++M  +G +PD+   N 
Sbjct: 610 KGL--IPNNFAYNSLICGFCKCG-----------KLNEALKLEKVMRHRGLLPDIFTTNM 656

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +I G CK  R+  A+ +F DM++ G  P+ +TYN+ I  Y    ++  A  ++ +M    
Sbjct: 657 IIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASG 716

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
              P  ++Y   IH  C + R+  A   L ELV  G VP   TY
Sbjct: 717 SN-PDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTY 759



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 94/212 (44%), Gaps = 29/212 (13%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F RG+ V G      +M RRG    V   + +  I  L ++GLV EA   F  M +    
Sbjct: 557 FKRGD-VVGAQSLWGEMERRGIFPDVV--AFSAFIDGLSKQGLVEEAYNVFLEMLRKGLI 613

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------ 255
           P+ +AYN +I   C+ G  N+A  L + M   G    PD++T  ++I   CK G      
Sbjct: 614 PNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLL--PDIFTTNMIIGGLCKQGRMRSAI 671

Query: 256 ------MQTGCRKAIRR------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                  QTG    I               +  A++L   M   G  PD+  YN  I G 
Sbjct: 672 NVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGF 731

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           C + R+ RA+ + D++   G +PN VTYNS +
Sbjct: 732 CSSRRMNRAVLMLDELVSAGIVPNTVTYNSML 763



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 22/266 (8%)

Query: 153 DFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +FL DM  +G +  ++  +SV   I    + GL ++A   +  M  F   P     + ++
Sbjct: 462 EFLMDMLEKGLSPSIIAFNSV---IAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLL 518

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             L   G   +A  L+ QM   G     +   +T+L+  + K G   G           A
Sbjct: 519 MGLSINGRLQEATELIGQMIEKGLSV--NNMAFTVLLDKFFKRGDVVG-----------A 565

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             L+  M  +G  PDVVA++  IDG  K   +E A  +F +M +KG IPN   YNS I  
Sbjct: 566 QSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICG 625

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           +    ++++A+++ + M++    +P   +   II  LC+ GR+  A +   ++   G  P
Sbjct: 626 FCKCGKLNEALKLEKVMRHRGL-LPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSP 684

Query: 392 REYTYKLV----CDALNAAEEPSLLD 413
              TY  +    C A +     +L++
Sbjct: 685 DIITYNTLINGYCKAFDMVNADNLVN 710



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 16/234 (6%)

Query: 167 VTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +T S  TC  L+  L   G + EA     +M +     +  A+ V+++   + G+   A+
Sbjct: 507 LTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQ 566

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            L  +ME  G    PDV  ++  I    K G+           + EA ++F  ML KG +
Sbjct: 567 SLWGEMERRGIF--PDVVAFSAFIDGLSKQGL-----------VEEAYNVFLEMLRKGLI 613

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+  AYN LI G CK  ++  AL+L   M  +G +P+  T N  I        +  AI +
Sbjct: 614 PNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINV 673

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
              M       P   +Y  +I+  C+A  ++ A + +  +   GS P   TY +
Sbjct: 674 FMDMHQTGLS-PDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNI 726



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 14/172 (8%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G L    +   +I  L ++G +  A+  F  M Q    PD+  YN +IN  C+  + 
Sbjct: 643 RHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDM 702

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
             A  L+ +M   G    PD+ TY I I  +C             RR+  A  +   ++ 
Sbjct: 703 VNADNLVNRMYASG--SNPDLTTYNIRIHGFCS-----------SRRMNRAVLMLDELVS 749

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            G VP+ V YN +++G C    ++RA+ L   + K   +PN VT N  +  +
Sbjct: 750 AGIVPNTVTYNSMLNGVCSDI-LDRAMILTARLLKMAFVPNVVTANLLLSQF 800


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+      A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I        ++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWGLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  ++E A ELFD+M   G +P
Sbjct: 186 ------DLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D   E+   G  P + TY  + D 
Sbjct: 297 DLTDEMSMKGLKPDKITYTTLIDG 320



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 15/188 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG +    + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFK 281
           A+ L ++M + G +  PD  TYT LI   CK G ++T      R+R+ + N   RL    
Sbjct: 295 AQDLTDEMSMKGLK--PDKITYTTLIDGSCKEGHLETAFE--YRKRMIKEN--IRL---- 344

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
               D VAY  LI G C+  R   A ++  +M   G  P   TY   I  +    ++   
Sbjct: 345 ----DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTG 400

Query: 342 IEMMRKMQ 349
            +++++MQ
Sbjct: 401 SKLLKEMQ 408


>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 418

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 14/217 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    + DVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK            RR+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCK-----------NRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +I  LC+ GR ++A   L E++  G  P   TY ++
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 387



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 102/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +     R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWSLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G   DV  Y+ LI+G CK  +++ A ELFD+M   G +P
Sbjct: 186 ------DLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 240 NGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDG 320



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 15/188 (7%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG +    + T LI    +   V+ A+  + +M      PD+  YN +I  LC+ G+  +
Sbjct: 235 NGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQ 294

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFK 281
           A+ L+++M + G +  PD  TYT LI   CK G ++T      R+R+ + N   RL    
Sbjct: 295 AQDLIDEMSMKGLK--PDKITYTTLIDGNCKEGDLETAFE--YRKRMIKEN--IRL---- 344

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
               D VAY  LI G C+  R   A ++  +M   G  P   TY   I  +    ++   
Sbjct: 345 ----DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCEKGDVWTG 400

Query: 342 IEMMRKMQ 349
           ++++++MQ
Sbjct: 401 LKLLKEMQ 408



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 34/244 (13%)

Query: 188 ALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
            L ++  M  F C   +   A  ++   + R G  + +      +E  G +   D+Y ++
Sbjct: 12  TLQSYCTMIHFLCTHQMLPEAKTLIQIVVSRKGKGSASAVFAAILETKGTQ-RSDIYVFS 70

Query: 246 ILISSYCKYGM---QTGCRKAIR-----------RRIWEANHLFRLMLFK---------- 281
            LI++Y + G       C + I+           R++ E  HL +L  FK          
Sbjct: 71  GLITAYLESGFLRDAIECYRLIKEHKFRVPFDTCRKVLE--HLMKLKYFKLVWGFYEESL 128

Query: 282 --GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
             G+   +  +N L+    K   I  A  +FD + K    P+ V++N+ +  Y  + ++D
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 340 KAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           +   +   MQ    GV +   +Y+ +I+ LC+A ++ +A +   E++D G VP   T+  
Sbjct: 189 EGFRLKNAMQA--SGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTT 246

Query: 399 VCDA 402
           + D 
Sbjct: 247 LIDG 250


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 134/275 (48%), Gaps = 29/275 (10%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           ++F++ ++ RG    V T ++  L++ L  +G  +E       +    C P+V  Y+++I
Sbjct: 170 FEFVRTLNSRGCKPDVITYNI--LLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILI 227

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           ++LCR G   ++  L++ M+  G    PD Y Y  LI+++C+ G           ++  A
Sbjct: 228 SSLCRDGKIEESVNLVKVMKEKGL--TPDAYCYDPLIAAFCREG-----------KLDMA 274

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
                 M+  GF+PD+V YN ++   CK    + A+E+F  +++ GC PN  +YN+ +  
Sbjct: 275 IEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSA 334

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                +  +A+ M+ +M  L+ G+ P   +Y  +I  LC  G V EA   LA+++ G   
Sbjct: 335 LWSSGDRYRALGMISQM--LSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQ 392

Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           P   +YK V   L  A            RI D IE
Sbjct: 393 PNIVSYKTVLLGLCKAH-----------RIDDAIE 416



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 133/291 (45%), Gaps = 25/291 (8%)

Query: 122 VERFFDFFH--NEMTCKEMGI---VFARGNNVKGLWD----FLKDMSRRGNGELVTTSSV 172
           V+R F+F    N   CK   I   +  R    +G WD    ++ ++  RG    V T S+
Sbjct: 166 VDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSI 225

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             LI  L  +G + E++     MK+    PD Y Y+ +I A CR G  + A   L+ M  
Sbjct: 226 --LISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMIC 283

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            GF   PD+  Y  ++++ CK G               A  +F  +   G  P+V +YN 
Sbjct: 284 DGFL--PDIVNYNTIMAALCKNGNGD-----------HAVEIFGKLDEVGCPPNVSSYNT 330

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           ++     +    RAL +   M  KG  P+ +TYNS I        +D+AI ++  M +  
Sbjct: 331 MLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLS-G 389

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              P   SY  ++  LC+A R+ +A + LA +++ G  P E TY L+ + +
Sbjct: 390 RFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGI 440



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 30/222 (13%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM---- 256
           +PDV+AYN VI+  C+      A+ +L++M+  GF   PDV T+ I+I ++C  G     
Sbjct: 41  KPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFS--PDVVTHNIMIGTFCGKGKIDLA 98

Query: 257 ---------QTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
                       C+  +               I EA  L   ML +G  PD   YN +  
Sbjct: 99  LKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITR 158

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
           G CK  +++RA E    +N +GC P+ +TYN  +R      + D+  + M ++   + G 
Sbjct: 159 GLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEI--FSRGC 216

Query: 356 -PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            P   +Y+ +I +LC  G++ E+ + +  + + G  P  Y Y
Sbjct: 217 EPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCY 258



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 18/205 (8%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDV     +I       N +KA  ++  +E  G    PDV+ Y  +IS +CK       
Sbjct: 7   QPDVILCTKLIKGFFNSRNIDKATRVMGILEKHG---KPDVFAYNAVISGFCK------- 56

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK-KGCI 319
                 RI  A  +   M  KGF PDVV +N +I   C   +I+ AL++F+++ K   C 
Sbjct: 57  ----ANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCK 112

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P  +TY   I  Y +   ID+A++++ +M  L+ G+ P + +Y  I   LC+ G+V  A 
Sbjct: 113 PTLITYTILIEAYILEGGIDEALKLLDEM--LSRGLEPDTFTYNVITRGLCKEGKVDRAF 170

Query: 379 DFLAELVDGGSVPREYTYKLVCDAL 403
           +F+  L   G  P   TY ++  AL
Sbjct: 171 EFVRTLNSRGCKPDVITYNILLRAL 195



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 13/178 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++  L + G  + A+  F ++ +  C P+V +YN +++AL   G+  +A  ++ QM   G
Sbjct: 296 IMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKG 355

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDV TY  LIS  C+ GM           + EA  L   ML   F P++V+Y  ++
Sbjct: 356 I--DPDVITYNSLISCLCRDGM-----------VDEAIGLLADMLSGRFQPNIVSYKTVL 402

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
            G CK +RI+ A+E+   M + GC PN  TY   I          +A+E+   +  +N
Sbjct: 403 LGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSLYIMN 460


>gi|115474407|ref|NP_001060800.1| Os08g0107700 [Oryza sativa Japonica Group]
 gi|113622769|dbj|BAF22714.1| Os08g0107700, partial [Oryza sativa Japonica Group]
          Length = 374

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 124/259 (47%), Gaps = 25/259 (9%)

Query: 175 LIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L+K L ++   +EA+     RM    C P+V++Y +++  LC      +A  LL  M + 
Sbjct: 132 LLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVA 191

Query: 234 -----GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
                G+  PPDV +Y  +I+   + G          R++  A HLF  ML +G  PDVV
Sbjct: 192 DDTRGGY--PPDVVSYNTVINGLLREG----------RQLDTAYHLFDQMLDQGLSPDVV 239

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            YN +I    K   +++A  +   M K G +PNR+T+NS +  Y    + + AI + ++M
Sbjct: 240 TYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRM 299

Query: 349 QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
                GV P   +Y  ++  LC+ GR +EAR     +V  G  P   TY  +      A 
Sbjct: 300 --CRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGY--AT 355

Query: 408 EPSL--LDDGLRKRIRDGI 424
           E SL  +   L   +R+GI
Sbjct: 356 EGSLVKMHHLLDMMVRNGI 374



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 119/274 (43%), Gaps = 57/274 (20%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALAT--FYRM---KQFRCRPDVYAYNVVINALCRVGNFNK 222
           TTSS+  L + L +    + A+A   F RM    + +  P++  Y+VVI+   RVG+ + 
Sbjct: 50  TTSSIVDLNRALSDAARHSPAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDL 109

Query: 223 ARFLL-----------------------------EQME-----LPGFRCPPDVYTYTILI 248
           A   L                             E M+     +P   C P+V++YTIL+
Sbjct: 110 AFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILL 169

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-----GFVPDVVAYNCLIDGCCKTYR- 302
              C              R  +A HL   M+       G+ PDVV+YN +I+G  +  R 
Sbjct: 170 KGLCD-----------ENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQ 218

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           ++ A  LFD M  +G  P+ VTYNS I   S    +DKA  ++ +M   N  +P   ++ 
Sbjct: 219 LDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVK-NGAMPNRITHN 277

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            ++H  C +G+  +A      +   G  P  +TY
Sbjct: 278 SLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTY 311



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 13/176 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +  +L E   ++ A   F +M      PDV  YN +I+AL +    +KA  +L +M  
Sbjct: 207 TVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVK 266

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P+  T+  L+  YC  G           +  +A  +F+ M   G  PDV  YN 
Sbjct: 267 NG--AMPNRITHNSLLHGYCSSG-----------KPNDAIGVFKRMCRDGVEPDVFTYNT 313

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           L+   CK  R   A ++FD M K+G  PN  TY + +  Y+    + K   ++  M
Sbjct: 314 LMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMM 369



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 13/121 (10%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG +    +   L+      G  N+A+  F RM +    PDV+ YN ++  LC+ G   +
Sbjct: 267 NGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSME 326

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           AR + + M   G +  P+  TY  L+  Y   G            + + +HL  +M+  G
Sbjct: 327 ARKIFDSMVKRGHK--PNSATYGTLLHGYATEG-----------SLVKMHHLLDMMVRNG 373

Query: 283 F 283
            
Sbjct: 374 I 374



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 10/150 (6%)

Query: 263 AIRRRIWEANHLFRLMLFKG---FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           A R     A  LFR M+        P+++ Y+ +ID C +   ++ A      + + G  
Sbjct: 64  AARHSPAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWT 123

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEM-MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
              +T++  ++         +A+++ +R+M  L    P   SYT ++  LC+  R  +A 
Sbjct: 124 AEAITFSPLLKALCDKKRTSEAMDIALRRMPVLG-CTPNVFSYTILLKGLCDENRSQQAL 182

Query: 379 DFL-----AELVDGGSVPREYTYKLVCDAL 403
             L     A+   GG  P   +Y  V + L
Sbjct: 183 HLLHTMMVADDTRGGYPPDVVSYNTVINGL 212


>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 484

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 135/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 175 L-IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L I   G+ G+V E++  F +M++        +Y+ +   + R G F  A+    +M   
Sbjct: 85  LMIDSYGKAGIVQESVKLFQKMEELGVERTTKSYDTLFKVILRRGRFMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ ++I  +   G           ++  AN  F  M  +   PDV+ YN +
Sbjct: 145 GIE--PTRHTFNVMIWGFFLSG-----------KVETANRFFDDMKSREISPDVITYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  +++ A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+   +
Sbjct: 192 INGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMK--GY 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E+VD    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARSVLKEMVDKYIAPTD 290



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 31/239 (12%)

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------------Q 257
           +I  L R    N AR +L  M   G     D++   ++I SY K G+            +
Sbjct: 51  IIEILGRASKLNHARCILLDMPKKGLEWDEDMWV--LMIDSYGKAGIVQESVKLFQKMEE 108

Query: 258 TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
            G  +              R R   A   F  ML +G  P    +N +I G   + ++E 
Sbjct: 109 LGVERTTKSYDTLFKVILRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVET 168

Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
           A   FDDM  +   P+ +TYN+ I  Y  V ++D+A +   +M+  N   PT  +YT +I
Sbjct: 169 ANRFFDDMKSREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIE-PTVVTYTTLI 227

Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRI 420
                  +V +A   + E+   G  P   TY      +C+A   +E  S+L + + K I
Sbjct: 228 KGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSVLKEMVDKYI 286



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 25/214 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++EA   F  MK     P V  Y  +I     V   + A  L+E+M+  G+   P+  TY
Sbjct: 201 MDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMK--GYGIKPNAITY 258

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRI 303
           + L+   C              ++ EA  + + M+ K   P D   +  LI G CKT  +
Sbjct: 259 STLLPGLCN-----------AEKMSEARSVLKEMVDKYIAPTDNSIFMRLISGQCKTGNL 307

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM---------QNLNHG 354
           + A ++   M +         Y   I  +   ++ DKA++++ K+         Q+  H 
Sbjct: 308 DAAADVLKAMIRLSVPTEAGHYGVLIENFCKADQHDKAVKLLDKLIEKDIILRPQSTLHM 367

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            P  S+Y P+I  LC  G+  +A   + +L+  G
Sbjct: 368 EP--SAYNPMIEYLCNNGQTAKAEALVRQLLKLG 399


>gi|255554881|ref|XP_002518478.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542323|gb|EEF43865.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 132/272 (48%), Gaps = 19/272 (6%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N+V   W   K+M   G  E V T ++  +I  LG+EG + EA++  YR  +    P+V 
Sbjct: 142 NDVNRFWKMYKEMVSYGYIENVNTFNL--IIYALGKEGRLVEAVSVIYRSLKTGIWPNVV 199

Query: 206 AYNVVINALCRVGNFNKARFLLEQME-LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
            +N++I+   ++G  + A  L+ +ME + G    PD  TY   ++ +CK G         
Sbjct: 200 TFNMIIDGAIKMGAMDLALKLVRKMEVMSGCSVKPDSVTYNSFVNGFCKIG--------- 250

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
              +  A    + ML K   P+V  Y  L+DG  +   +E A  L D++ +KG +PN V 
Sbjct: 251 --NLAVAEEFKKEMLGKEIEPNVRTYATLVDGYTRVGSLENAFRLCDELVEKGLLPNSVI 308

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YNS I + S+  +++ A  ++  M +     P   +Y+ +I  LC  G + EA  FL  +
Sbjct: 309 YNSIIHWLSMEGDMEGASLLLSDMID-KRIYPDQFTYSIVIEGLCRNGYLNEAFKFLQMI 367

Query: 385 VDGGSVPREYTYKLV----CDALNAAEEPSLL 412
           ++   V   +++ +V    C + N A    LL
Sbjct: 368 LEMSLVRDAFSHNVVINYLCRSNNLAGAKQLL 399



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 17/238 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + +I+ L   G +NEA      + +     D +++NVVIN LCR  N   A+ LL  M +
Sbjct: 345 SIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQLLANMYV 404

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PDV T+  LI  +CK G           ++  A  ++  M+  G  P+++ YN 
Sbjct: 405 RGL--VPDVVTFGTLIDRHCKDG-----------KVENAIQVYEKMIKTGEKPNLLIYNS 451

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +I+G  K    + A+ L D + + G   + VTYN+ I  Y    +ID+A  +  +M+N  
Sbjct: 452 VINGFAKEGSFDPAILLIDTLRRMGLF-DVVTYNTLIHGYCNCGKIDQAFALFSEMRN-- 508

Query: 353 HGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
            G+  S  +Y  +I++LC+AG VL+A++ +  +V  G +P   TY ++  + +    P
Sbjct: 509 SGILASHVTYNTLINSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTILITSFSKKCSP 566



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 113/233 (48%), Gaps = 17/233 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELP 233
           +I  L  EG +  A      M   R  PD + Y++VI  LCR G  N+A +FL   +E+ 
Sbjct: 312 IIHWLSMEGDMEGASLLLSDMIDKRIYPDQFTYSIVIEGLCRNGYLNEAFKFLQMILEMS 371

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
             R   D +++ ++I+  C+     G           A  L   M  +G VPDVV +  L
Sbjct: 372 LVR---DAFSHNVVINYLCRSNNLAG-----------AKQLLANMYVRGLVPDVVTFGTL 417

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           ID  CK  ++E A+++++ M K G  PN + YNS I  ++     D AI ++  ++ +  
Sbjct: 418 IDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGSFDPAILLIDTLRRM-- 475

Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
           G+    +Y  +IH  C  G++ +A    +E+ + G +    TY  + ++L  A
Sbjct: 476 GLFDVVTYNTLIHGYCNCGKIDQAFALFSEMRNSGILASHVTYNTLINSLCKA 528



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 91/213 (42%), Gaps = 35/213 (16%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R NN+ G    L +M  RG    V T     LI    ++G V  A+  + +M +   +P+
Sbjct: 388 RSNNLAGAKQLLANMYVRGLVPDVVTFGT--LIDRHCKDGKVENAIQVYEKMIKTGEKPN 445

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-------- 255
           +  YN VIN   + G+F+ A  L++ +   G     DV TY  LI  YC  G        
Sbjct: 446 LLIYNSVINGFAKEGSFDPAILLIDTLRRMGLF---DVVTYNTLIHGYCNCGKIDQAFAL 502

Query: 256 -------------------MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                              + + C+      + +A  L ++M+ +G +PD V Y  LI  
Sbjct: 503 FSEMRNSGILASHVTYNTLINSLCKAG---HVLQAKELMKMMVLRGLIPDYVTYTILITS 559

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
             K    E  +EL D M  KG +P+R TY + +
Sbjct: 560 FSKKCSPEEVIELHDYMVLKGVVPDRQTYQTMV 592



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/114 (20%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            ++ L+  C +    E A E+   +   G       +N+F+ +   +N++++  +M ++M
Sbjct: 95  VFDALVRTCTQIGATEGAYEVITKLQLDGFWVTVHAWNNFLSHLLKLNDVNRFWKMYKEM 154

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +  + +   +++  II+AL + GR++EA   +   +  G  P   T+ ++ D 
Sbjct: 155 VSYGY-IENVNTFNLIIYALGKEGRLVEAVSVIYRSLKTGIWPNVVTFNMIIDG 207


>gi|413950866|gb|AFW83515.1| hypothetical protein ZEAMMB73_465290 [Zea mays]
          Length = 478

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 118/245 (48%), Gaps = 18/245 (7%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L DM   G      T +V            + +AL  F  +     +PDV +YN +I+ 
Sbjct: 151 LLADMRAAGFAPTAATYNVLLKAHCSDAAAHIEDALRLFRNIP----KPDVCSYNTIIDG 206

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LCR G   +A  +  +M   G    P V TYT +I     +  + GC         +A  
Sbjct: 207 LCRRGRLAEALDMFSEMV--GKCIAPTVVTYTTVI----HWLAREGCFD-------DALK 253

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +F  M  +G  P++V Y+ LIDG CK  R   ALEL D M K+  +PN +TY+S I    
Sbjct: 254 IFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMIKEKKLPNMITYSSVIDGLC 313

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             + + +A+E++ +M+ L    P +  +  +I  LC+AGR +EA ++L E+V  G  P  
Sbjct: 314 KEHMLSEAMEILDRMR-LQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNR 372

Query: 394 YTYKL 398
            T+ L
Sbjct: 373 VTWSL 377



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 18/199 (9%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           +YN V+ AL    +   AR LL  M   GF   P   TY +L+ ++C             
Sbjct: 131 SYNAVLAALVAHSHLPLARSLLADMRAAGF--APTAATYNVLLKAHCSDAAA-------- 180

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             I +A  LFR +      PDV +YN +IDG C+  R+  AL++F +M  K   P  VTY
Sbjct: 181 -HIEDALRLFRNIP----KPDVCSYNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTY 235

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            + I + +     D A+++  +M     GV P   +Y+ +I  LC+ GR   A + L  +
Sbjct: 236 TTVIHWLAREGCFDDALKIFHEMGR--RGVSPNLVTYSSLIDGLCKGGRATSALELLDRM 293

Query: 385 VDGGSVPREYTYKLVCDAL 403
           +    +P   TY  V D L
Sbjct: 294 IKEKKLPNMITYSSVIDGL 312



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 13/168 (7%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T +I  L  EG  ++AL  F+ M +    P++  Y+ +I+ LC+ G    A  LL
Sbjct: 231 TVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELL 290

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M     +  P++ TY+ +I   CK  M +           EA  +   M  +G  PD 
Sbjct: 291 DRMI--KEKKLPNMITYSSVIDGLCKEHMLS-----------EAMEILDRMRLQGRKPDA 337

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             +  LI G C   R   A    D+M   G  PNRVT++   R  + V
Sbjct: 338 GLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPNRVTWSLHARINNTV 385



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 61/154 (39%), Gaps = 11/154 (7%)

Query: 267 RIWEANHLFRLMLFKGFVPDVV-AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           R   A HLFR       +P    +YN ++        +  A  L  DM   G  P   TY
Sbjct: 108 RPLAALHLFRSAPSDLALPHSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATY 167

Query: 326 NSFIRYY--SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
           N  ++ +       I+ A+ + R +       P   SY  II  LC  GR+ EA D  +E
Sbjct: 168 NVLLKAHCSDAAAHIEDALRLFRNIPK-----PDVCSYNTIIDGLCRRGRLAEALDMFSE 222

Query: 384 LVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           +V     P   TY  V   L  A E    DD L+
Sbjct: 223 MVGKCIAPTVVTYTTVIHWL--ARE-GCFDDALK 253



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 58/218 (26%)

Query: 157 DMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
           +M RRG +  LVT SS   LI  L + G    AL    RM + +  P++  Y+ VI+ LC
Sbjct: 257 EMGRRGVSPNLVTYSS---LIDGLCKGGRATSALELLDRMIKEKKLPNMITYSSVIDGLC 313

Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
           +    ++A  +L++M L G +  PD   +  LI   C  G          R +  AN+L 
Sbjct: 314 KEHMLSEAMEILDRMRLQGRK--PDAGLFGKLIVGLCDAG----------RAVEAANYLD 361

Query: 276 RLMLFKGFVPDVVAY-------NCLIDGCCKTYRIERALELFD----------------- 311
             M+  G  P+ V +       N ++   C    + RA +++                  
Sbjct: 362 E-MVLAGIEPNRVTWSLHARINNTVLTALCDKGELGRAFQVYQSTRTRSISTDPTTFHLL 420

Query: 312 -----------------DMNKKGCIPNRVTYNSFIRYY 332
                            DM  + CIP R T++  I  Y
Sbjct: 421 VESFSKNNIEKAARVVLDMLSERCIPERETWDVIISGY 458


>gi|308044519|ref|NP_001183314.1| uncharacterized protein LOC100501715 [Zea mays]
 gi|238010730|gb|ACR36400.1| unknown [Zea mays]
          Length = 320

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 121/255 (47%), Gaps = 24/255 (9%)

Query: 175 LIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL- 232
           LIK L +     +A+   F RM +    PDV++YN +I  LC      +A  LL  M   
Sbjct: 70  LIKGLCDGKRTGDAMDMVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTAN 129

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G+ C PDV +Y I+I    K G            + +A  LF  M  +GF PD+V Y+ 
Sbjct: 130 GGYNCSPDVVSYNIVIDGLFKEG-----------EVDKAYFLFHEMPGQGFPPDLVTYSS 178

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ--N 350
           +IDG CK   +++A      M  KG +PN   YNS I  Y  + ++ +A+ +++KM    
Sbjct: 179 VIDGLCKAQAMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGG 238

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA-AEEP 409
           L   V T   Y  +I   C+ GR  EAR     +V  G  P   TY   C  L+  A + 
Sbjct: 239 LQLNVVT---YNMLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTY---CSLLHGYATKG 292

Query: 410 SLLD--DGLRKRIRD 422
           +L+D  D L   IRD
Sbjct: 293 ALVDMHDLLDLMIRD 307



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 76/164 (46%), Gaps = 13/164 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   +I  L +EG V++A   F+ M      PD+  Y+ VI+ LC+    +KA   L+QM
Sbjct: 140 SYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQM 199

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P+   Y  LI  YC  G           ++ EA  L + M   G   +VV Y
Sbjct: 200 LYKGVM--PNTRPYNSLIHGYCSLG-----------QLVEAVRLLKKMSGGGLQLNVVTY 246

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           N LID  CK  R   A  +FD M ++G  PN  TY S +  Y+ 
Sbjct: 247 NMLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYAT 290



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 76/183 (41%), Gaps = 16/183 (8%)

Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
           ILI  +C  G           R+  A   F L L  G+    V  N LI G C   R   
Sbjct: 34  ILIRCFCNVG-----------RLDLAFAAFGLFLRTGWRVQNVVLNQLIKGLCDGKRTGD 82

Query: 306 ALEL-FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV---PTSSSY 361
           A+++ F  M + G  P+  +YN+ I+      +  +A+E++  M   N G    P   SY
Sbjct: 83  AMDMVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHM-TANGGYNCSPDVVSY 141

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
             +I  L + G V +A     E+   G  P   TY  V D L  A+     +  L++ + 
Sbjct: 142 NIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLY 201

Query: 422 DGI 424
            G+
Sbjct: 202 KGV 204


>gi|224102411|ref|XP_002312667.1| predicted protein [Populus trichocarpa]
 gi|222852487|gb|EEE90034.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 151/348 (43%), Gaps = 44/348 (12%)

Query: 103 RDPQKVTL-----GLNKATEFYHWVERFFDFFH-----NEMTCKEMGIVFARGNNVKGLW 152
           R+P  VT      GL K  +F   V+ + +        +   C  + +    G  V   +
Sbjct: 145 REPDVVTFTIIIDGLCKMKKFDAAVQFWLNMLDKGIRPDNKACVALAVGLCDGGQVDLAY 204

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + +  +   G  E V+T     LI      G +++ALA    M +  C+PD+  YNV++N
Sbjct: 205 ELIIGVISGGLSE-VSTLVYNALISGFCRAGRIDKALAMVSFMSRTGCKPDLVTYNVLLN 263

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
             C    F +A  LL++ME       PDVY+Y  L+ ++CK                 AN
Sbjct: 264 YCCNEFMFEEAVKLLKKMECSAIE--PDVYSYNQLLKAHCK-----------------AN 304

Query: 273 HLFRLMLF-------KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
           H  +  LF       KGF  DVV+YN +I   C      RA +LF++M +KG  P+ VT+
Sbjct: 305 HPDKAYLFMVTKMVPKGFC-DVVSYNTIIKAFCSISNNRRAYKLFEEMGRKGIAPDVVTF 363

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              I+ +      D A +++  M  +   +P    YT II   C++G+V  A     ++V
Sbjct: 364 TILIKAFLREGNSDMAKKLLDLMAGMGL-LPDRIFYTTIIDHHCKSGKVEMAHSIFCDMV 422

Query: 386 DGGSVPREYTYKLV----CDALNAAEEPSLLDDGL-RKRIRDGIEYRF 428
           + G  P   +Y  +    C +L   E   L +  L R    D + Y+ 
Sbjct: 423 EKGITPDVVSYNALINGFCKSLRVGEVMHLYEQMLQRGSFPDEVTYKL 470



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 17/173 (9%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A   F  M +    PDV  + ++I A  R GN + A+ LL+ M   G    PD   YT +
Sbjct: 344 AYKLFEEMGRKGIAPDVVTFTILIKAFLREGNSDMAKKLLDLM--AGMGLLPDRIFYTTI 401

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I  +CK G           ++  A+ +F  M+ KG  PDVV+YN LI+G CK+ R+   +
Sbjct: 402 IDHHCKSG-----------KVEMAHSIFCDMVEKGITPDVVSYNALINGFCKSLRVGEVM 450

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI----EMMRKMQNLNHGVP 356
            L++ M ++G  P+ VTY   I      N++  A     +MM +   L+ G+ 
Sbjct: 451 HLYEQMLQRGSFPDEVTYKLIIGALVRENKLSDACRVWDQMMERGLTLDRGIS 503



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 50/223 (22%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M++  C PD++A+N+ +N L R      A  +  +M   G    PDV T+TI+I   CK 
Sbjct: 105 MEKLHCVPDIWAFNIYLNLLFRENREESALEVFGRMVERGRE--PDVVTFTIIIDGLCK- 161

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD---------------------------- 286
                      ++   A   +  ML KG  PD                            
Sbjct: 162 ----------MKKFDAAVQFWLNMLDKGIRPDNKACVALAVGLCDGGQVDLAYELIIGVI 211

Query: 287 --------VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
                    + YN LI G C+  RI++AL +   M++ GC P+ VTYN  + Y       
Sbjct: 212 SGGLSEVSTLVYNALISGFCRAGRIDKALAMVSFMSRTGCKPDLVTYNVLLNYCCNEFMF 271

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           ++A+++++KM+  +   P   SY  ++ A C+A    +A  F+
Sbjct: 272 EEAVKLLKKME-CSAIEPDVYSYNQLLKAHCKANHPDKAYLFM 313



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 16/209 (7%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           + GL++ A+  F  M    CR     YN  I  L R   F+ A     +M   GF     
Sbjct: 21  KAGLIDYAVKVFDEMTLSECRVFGIDYNRFIGVLIRHSRFDLAHHYYSKMAPLGFSLSS- 79

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
            +TY+  IS  C+            +     ++L + M     VPD+ A+N  ++   + 
Sbjct: 80  -FTYSRFISGLCQ-----------TKEFTFIDNLLKDMEKLHCVPDIWAFNIYLNLLFRE 127

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSS 359
            R E ALE+F  M ++G  P+ VT+   I     + + D A++    M  L+ G+ P + 
Sbjct: 128 NREESALEVFGRMVERGREPDVVTFTIIIDGLCKMKKFDAAVQFWLNM--LDKGIRPDNK 185

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +   +   LC+ G+V  A + +  ++ GG
Sbjct: 186 ACVALAVGLCDGGQVDLAYELIIGVISGG 214



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 1/121 (0%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A+H +  M   GF      Y+  I G C+T        L  DM K  C+P+   +N ++ 
Sbjct: 63  AHHYYSKMAPLGFSLSSFTYSRFISGLCQTKEFTFIDNLLKDMEKLHCVPDIWAFNIYLN 122

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                N  + A+E+  +M       P   ++T II  LC+  +   A  F   ++D G  
Sbjct: 123 LLFRENREESALEVFGRMVERGRE-PDVVTFTIIIDGLCKMKKFDAAVQFWLNMLDKGIR 181

Query: 391 P 391
           P
Sbjct: 182 P 182


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 109/217 (50%), Gaps = 14/217 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G +NE       M+    +PDVY Y+V+IN LC+    +    L ++M   G    P+  
Sbjct: 189 GDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGL--VPNGV 246

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD+V YN LI G CK   
Sbjct: 247 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGD 295

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A E   +M   N  +    +YT
Sbjct: 296 LKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLD-DVAYT 354

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +I  LC+ GR ++A   L E++  G  P   TY ++
Sbjct: 355 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 391



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++ C+ G    A+ + + +   G R  P V ++  L++ Y K G        
Sbjct: 140 LYFFNILMHSFCKEGEIRLAQSVFDAITKWGLR--PSVVSFNTLMNGYIKLG-------- 189

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + N  FRL   M   G  PDV  Y+ LI+G CK  +++   ELFD+M   G +P
Sbjct: 190 ------DLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVP 243

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 244 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLVTYNTLIYGLCKKGDLKQAQ 300

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 301 DLIDEMSMKGLKPDKITYTTLIDG 324



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 26/234 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG   TT     LI    + G V+ A+  + +
Sbjct: 221 CKE-----SKMDDXNELFDEMLDXGLVPNGVTFTT-----LIDGHCKNGRVDLAMEIYKQ 270

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G +  PD  TYT LI   CK 
Sbjct: 271 MLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK--PDKITYTTLIDGSCKE 328

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 329 GDLETAFE--YRXRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 376

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
              G  P   TY   I  +    ++    ++M++MQ   + VP+  +Y  +++ 
Sbjct: 377 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGY-VPSVVTYNVLMNG 429



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 40/215 (18%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           R D+Y ++ +I A    G    A       +   FR P D                   C
Sbjct: 67  RSDIYVFSGIITAYLESGFLRDAIECYRLTKEHKFRVPFDT------------------C 108

Query: 261 RKAIRRRIWEANHLFRLMLFK------------GFVPDVVAYNCLIDGCCKTYRIERALE 308
           RK +        HL +L  FK            G+   +  +N L+   CK   I  A  
Sbjct: 109 RKVLE-------HLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQS 161

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHA 367
           +FD + K G  P+ V++N+ +  Y  + ++++   + + MQ    GV P   +Y+ +I+ 
Sbjct: 162 VFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQ--ASGVQPDVYTYSVLING 219

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           LC+  ++ +  +   E++D G VP   T+  + D 
Sbjct: 220 LCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDG 254


>gi|242058297|ref|XP_002458294.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
 gi|241930269|gb|EES03414.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
          Length = 534

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 118/246 (47%), Gaps = 18/246 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
             L DM   G      T +V    +       + +AL  F  +     +PDV +YN +I+
Sbjct: 149 SLLADMRAAGFAPTAATYNVLLKAQCSDAAADIKDALRLFRNIP----KPDVCSYNTIID 204

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LCR G    A  +  +M   G    P V TYT LI     +  + GC         +A 
Sbjct: 205 GLCRRGRLAAALEMFSEMV--GKCIAPTVVTYTTLI----HWLAREGC-------FDDAL 251

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F  M  +G  P++V Y+ LIDG CK  R   ALEL D M K+  +PN +TY+S I   
Sbjct: 252 KIFDEMGRRGVSPNLVTYSSLIDGLCKGGRAASALELMDRMIKEKKLPNTITYSSVIDGL 311

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
              + + +A+E++ +M+ L    P +  +  +I  LC+AGR +EA ++L E++  G  P 
Sbjct: 312 CKEHMLSEAMEVLDRMR-LQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMILAGIEPN 370

Query: 393 EYTYKL 398
             T+ L
Sbjct: 371 RVTWSL 376



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 92/199 (46%), Gaps = 18/199 (9%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
           +YN V+ AL    +   AR LL  M   GF   P   TY +L+ + C             
Sbjct: 130 SYNAVLAALVAHSHLPLARSLLADMRAAGFA--PTAATYNVLLKAQCSDAAAD------- 180

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             I +A  LFR +      PDV +YN +IDG C+  R+  ALE+F +M  K   P  VTY
Sbjct: 181 --IKDALRLFRNIP----KPDVCSYNTIIDGLCRRGRLAAALEMFSEMVGKCIAPTVVTY 234

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            + I + +     D A+++  +M     GV P   +Y+ +I  LC+ GR   A + +  +
Sbjct: 235 TTLIHWLAREGCFDDALKIFDEMGR--RGVSPNLVTYSSLIDGLCKGGRAASALELMDRM 292

Query: 385 VDGGSVPREYTYKLVCDAL 403
           +    +P   TY  V D L
Sbjct: 293 IKEKKLPNTITYSSVIDGL 311



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 13/168 (7%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LI  L  EG  ++AL  F  M +    P++  Y+ +I+ LC+ G    A  L+
Sbjct: 230 TVVTYTTLIHWLAREGCFDDALKIFDEMGRRGVSPNLVTYSSLIDGLCKGGRAASALELM 289

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M     +  P+  TY+ +I   CK  M           + EA  +   M  +G  PD 
Sbjct: 290 DRMI--KEKKLPNTITYSSVIDGLCKEHM-----------LSEAMEVLDRMRLQGRKPDA 336

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             +  LI G C   R   A    D+M   G  PNRVT++   R  + V
Sbjct: 337 GLFGKLIVGLCDAGRAVEAANYLDEMILAGIEPNRVTWSLHTRINNTV 384



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 94/237 (39%), Gaps = 33/237 (13%)

Query: 116 TEFYHWVERFFDFFHNEMTCKEMGIVFARGNNV--KGLWDFLKDMSRRGNG--------- 164
           T   HW+ R   F        EMG      N V    L D L    R  +          
Sbjct: 235 TTLIHWLAREGCFDDALKIFDEMGRRGVSPNLVTYSSLIDGLCKGGRAASALELMDRMIK 294

Query: 165 --ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
             +L  T + + +I  L +E +++EA+    RM+    +PD   +  +I  LC  G   +
Sbjct: 295 EKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVE 354

Query: 223 ARFLLEQMELPGFRCPPDVYTYTI-------LISSYCKYGMQTGCRKAIRRRIWEANHLF 275
           A   L++M L G    P+  T+++       ++++ C  G            +  A  ++
Sbjct: 355 AANYLDEMILAGIE--PNRVTWSLHTRINNTVLTALCAKG-----------ELGRAFQVY 401

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
           +    +    D   ++ L++   K   +E+A  +  DM  + CIP R T++  I  Y
Sbjct: 402 QSTRTRSISTDPTTFHLLVESFSKKKNMEKAAHVVLDMLSERCIPERETWDVIISGY 458


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 19/249 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+  L   GL +E       MK+    P V  YN++IN LC+ G   +A     QM    
Sbjct: 238 LLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQM--VS 295

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C PD+ TY  L+++ CK GM           + EA  +F L+      P ++ YN +I
Sbjct: 296 ENCSPDIITYNTLLTALCKEGM-----------VDEALQVFVLLSDSNCSPGLITYNTVI 344

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG  +   ++ AL+L++ M +KG  P+ +T+ S +  +  +++++ A+E++R+M   +H 
Sbjct: 345 DGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREMGKRDHR 404

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPS 410
           +  SS+Y  +I+ LC   RV  A   L  ++ G   P E  Y    K V DA    EE  
Sbjct: 405 I-NSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKSVADA-GMVEEAD 462

Query: 411 LLDDGLRKR 419
            L   L +R
Sbjct: 463 ELHQKLIER 471



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 118/250 (47%), Gaps = 17/250 (6%)

Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
           L D+  R N ++  ++  T LI+ L   G +  A      M      PDV  YN+++   
Sbjct: 44  LIDIMSRVN-QIPNSTCSTNLIRGLVRIGRIERASRVLKTMVMSGLVPDVITYNMMVGGF 102

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
           C+      A  LLE M L G  CPPDV TY  +I S    G           +  +A   
Sbjct: 103 CKRRQLRSAIDLLEDMSLSG--CPPDVITYNTIIRSLFDNG-----------KFDQAVEF 149

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           +R  L +G +P ++ Y  LI+   K     RALE+ +DM  +GC P+ VTYNS + + S 
Sbjct: 150 WRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFASK 209

Query: 335 VNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             + + A  ++  +  L+HG+ P + +Y  ++H+LC  G   E  + LA +      P  
Sbjct: 210 EGKYEDAALIIYNI--LSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTV 267

Query: 394 YTYKLVCDAL 403
            TY ++ + L
Sbjct: 268 VTYNILINGL 277



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 24/243 (9%)

Query: 150 GLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           GLWD     L  M +  +   V T ++  LI  L + GLV  A+  F +M    C PD+ 
Sbjct: 246 GLWDEVDEILAIMKKTSHPPTVVTYNI--LINGLCKCGLVERAINFFVQMVSENCSPDII 303

Query: 206 AYNVVINALCRVGNFNKAR--FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
            YN ++ ALC+ G  ++A   F+L    L    C P + TY  +I    + G        
Sbjct: 304 TYNTLLTALCKEGMVDEALQVFVL----LSDSNCSPGLITYNTVIDGLTRRGYMD----- 354

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
                 EA  L+  M+ KG  PD + +  L+ G C   ++E A+E+  +M K+    N  
Sbjct: 355 ------EALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREMGKRDHRINSS 408

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
            Y   I        +D AI+++  M +  +  P    Y+ +I ++ +AG V EA +   +
Sbjct: 409 AYRLVINGLCRNKRVDIAIQVLEMMISGRYK-PDEEIYSTLIKSVADAGMVEEADELHQK 467

Query: 384 LVD 386
           L++
Sbjct: 468 LIE 470



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 16/226 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+++ +      AL     M    C PD+  YN ++N   + G +  A  ++  +  
Sbjct: 166 TILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILS 225

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EANHLFRLMLFKGFVPDVVAYN 291
            G    P+  TY  L+ S C  G+            W E + +  +M      P VV YN
Sbjct: 226 HGME--PNAITYNSLLHSLCSCGL------------WDEVDEILAIMKKTSHPPTVVTYN 271

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            LI+G CK   +ERA+  F  M  + C P+ +TYN+ +        +D+A+++   + + 
Sbjct: 272 ILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDS 331

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           N   P   +Y  +I  L   G + EA     ++++ G  P   T++
Sbjct: 332 NCS-PGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHR 376



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 24/194 (12%)

Query: 208 NVVINALCRVGNFNKARFLLEQM----ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           N +++ LC+ G+  +A  L++ M    ++P   C       T LI    + G        
Sbjct: 26  NEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCS------TNLIRGLVRIG-------- 71

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              RI  A+ + + M+  G VPDV+ YN ++ G CK  ++  A++L +DM+  GC P+ +
Sbjct: 72  ---RIERASRVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVI 128

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLA 382
           TYN+ IR      + D+A+E  R    L  G +P    YT +I  + +    + A + L 
Sbjct: 129 TYNTIIRSLFDNGKFDQAVEFWRG--QLRRGCLPYLIPYTILIELVWKHCGTVRALEVLE 186

Query: 383 ELVDGGSVPREYTY 396
           ++   G  P   TY
Sbjct: 187 DMAIEGCYPDLVTY 200


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 119/264 (45%), Gaps = 48/264 (18%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK L  +G++ EA      M +    P+V  +N+++N LC++G  + A  L++ M   G
Sbjct: 397 LIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
           +   PD++T+ ILI  Y           + + ++  A  +  +ML  G  PDV  YN L+
Sbjct: 457 YF--PDIFTFNILIHGY-----------STQLKMENALEILDVMLDNGVDPDVYTYNSLL 503

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYN----SFIRYYSV--------------VN 336
           +G CKT + E  +E +  M +KGC PN  T+N    S  RY  +              VN
Sbjct: 504 NGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVN 563

Query: 337 -----------------EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
                            ++D A  + RKM+       ++ +Y  IIHA  E   V  A  
Sbjct: 564 PDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEK 623

Query: 380 FLAELVDGGSVPREYTYKLVCDAL 403
              E+VD    P  YTY+L+ D  
Sbjct: 624 LFQEMVDRCLGPDGYTYRLMVDGF 647



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 121/259 (46%), Gaps = 16/259 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V  +  +VK     L  + +RG   L    +    I+ L + G ++ A+     + +   
Sbjct: 225 VLCKKGDVKECEKLLDKVIKRG--VLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGP 282

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDV  YN +I  LC+   F +A   L +M   G    PD YTY  LI+ YCK GM    
Sbjct: 283 KPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLE--PDSYTYNTLIAGYCKGGMV--- 337

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
            +   R + +A       +F GFVPD   Y  LIDG C      RAL LF++   KG  P
Sbjct: 338 -QLAERIVGDA-------VFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKP 389

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           N + YN+ I+  S    I +A ++  +M      +P   ++  +++ LC+ G V +A   
Sbjct: 390 NVILYNTLIKGLSNQGMILEAAQLANEMSEKGL-IPEVQTFNILVNGLCKMGCVSDADGL 448

Query: 381 LAELVDGGSVPREYTYKLV 399
           +  ++  G  P  +T+ ++
Sbjct: 449 VKVMISKGYFPDIFTFNIL 467



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 136/308 (44%), Gaps = 30/308 (9%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           KA E ++ + +   F H   T + +          + + + L DM R   G  +      
Sbjct: 22  KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDM-RENVGNHMLEGVYV 80

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
             +K  G +G V EA+  F RM  + C P V++YN +++ L   G F++A  +  +M   
Sbjct: 81  GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDR 140

Query: 234 GFRCPPDVYTYTILISSYCKYG------------MQTGCRK------AIRRRIWEAN--- 272
           G    PDVY++TI + S+CK                 GC         +    +E N   
Sbjct: 141 GI--TPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKA 198

Query: 273 ---HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
               LF  ML  G    +  +N L+   CK   ++   +L D + K+G +PN  TYN FI
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFI 258

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +      E+D A+ M+  +  +  G  P   +Y  +I+ LC+  +  EA  +L ++V+ G
Sbjct: 259 QGLCQRGELDGAVRMVGCL--IEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEG 316

Query: 389 SVPREYTY 396
             P  YTY
Sbjct: 317 LEPDSYTY 324



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 16/203 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD + Y  +I+ LC  G  N+A  L  +    G +  P+V  Y  LI      GM     
Sbjct: 354 PDQFTYRSLIDGLCHEGETNRALALFNEALGKGIK--PNVILYNTLIKGLSNQGM----- 406

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I EA  L   M  KG +P+V  +N L++G CK   +  A  L   M  KG  P+
Sbjct: 407 ------ILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPD 460

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
             T+N  I  YS   +++ A+E++  M  L++GV P   +Y  +++ LC+  +  +  + 
Sbjct: 461 IFTFNILIHGYSTQLKMENALEILDVM--LDNGVDPDVYTYNSLLNGLCKTSKFEDVMET 518

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
              +V+ G  P  +T+ ++ ++L
Sbjct: 519 YKTMVEKGCAPNLFTFNILLESL 541



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 103/252 (40%), Gaps = 48/252 (19%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDVY YN ++N LC+   F       + M   G  C P+++T+ IL+ S C+Y       
Sbjct: 494 PDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKG--CAPNLFTFNILLESLCRY------- 544

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               R++ EA  L   M  K   PD V +  LIDG CK   ++ A  LF  M +   + +
Sbjct: 545 ----RKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSS 600

Query: 322 RV-TYNSFIRYYSVVNEIDKAIEMMRKM----------------------QNLNHG---- 354
              TYN  I  ++    +  A ++ ++M                       N+N G    
Sbjct: 601 STPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFL 660

Query: 355 --------VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
                   +P+ ++   +I+ LC   RV EA   +  +V  G VP         D    A
Sbjct: 661 LEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVNTICDVDKKEVA 720

Query: 407 EEPSLLDDGLRK 418
               +L+D L+K
Sbjct: 721 APKLVLEDLLKK 732



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 24/181 (13%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
           F +  ++ G +   + M        V++S+ T   +I    E+  V  A   F  M    
Sbjct: 576 FCKNGDLDGAYTLFRKMEEAYK---VSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRC 632

Query: 200 CRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
             PD Y Y ++++  C+ GN N   +FLLE ME  GF   P + T   +I+  C      
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMME-NGF--IPSLTTLGRVINCLC------ 683

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                +  R++EA  +   M+ KG VP+ V   C +D       +     + +D+ KK C
Sbjct: 684 -----VEDRVYEAAGIIHRMVQKGLVPEAVNTICDVD----KKEVAAPKLVLEDLLKKSC 734

Query: 319 I 319
           I
Sbjct: 735 I 735


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 14/242 (5%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G+G L    +   LI  L +   +  A      M  F   P+++ YN +I+  C+ GN +
Sbjct: 291 GDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLS 350

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A  L  ++E       PDV+TY+ILI   C              R+ EA+ L + M  K
Sbjct: 351 EALSLHSEIE--KHEILPDVFTYSILIKGLCGV-----------DRMEEADGLLQEMKKK 397

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           GF+P+ V YN LIDG CK   +E+A+E+   M +KG  PN +T+++ I  Y    +++ A
Sbjct: 398 GFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAA 457

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           + +  +M  +   +P   +YT +I    + G   EA     E+ + G  P  +T   + D
Sbjct: 458 MGLYTEMV-IKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLID 516

Query: 402 AL 403
            L
Sbjct: 517 GL 518



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 112/242 (46%), Gaps = 23/242 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI    E GLV EAL  +Y+M      P + A N+V++ L + G F+    +   M   G
Sbjct: 132 LIIAFSEMGLVEEALWVYYKMDVL---PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARG 188

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P+V TY  LI   C+ G              +A  LF  M+ K   P VV Y  LI
Sbjct: 189 --ASPNVVTYGTLIDGCCRQG-----------DFLKAFRLFDEMIEKKIFPTVVIYTILI 235

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   RI  A  +F  M   G +PN  TYN+ +  Y  +  + KA+E+ ++M  L  G
Sbjct: 236 RGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEM--LGDG 293

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEP 409
            +P   ++  +I  LC+   ++ AR FL ++   G VP  + Y  +    C A N +E  
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEAL 353

Query: 410 SL 411
           SL
Sbjct: 354 SL 355



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 118/266 (44%), Gaps = 51/266 (19%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+ L  E  ++EA + F  M+     P++Y YN +++  C++ +  KA  L ++M  
Sbjct: 232 TILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG 291

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P+V T+ ILI   CK       RK           L  +  F G VP++  YNC
Sbjct: 292 DGLL--PNVVTFGILIDGLCKTDEMVSARK----------FLIDMASF-GVVPNIFVYNC 338

Query: 293 LIDGCCK------------------------TY-----------RIERALELFDDMNKKG 317
           LIDG CK                        TY           R+E A  L  +M KKG
Sbjct: 339 LIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKG 398

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLE 376
            +PN VTYN+ I  Y     ++KAIE+  +M     G+ P   +++ +I   C+AG++  
Sbjct: 399 FLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMT--EKGIEPNIITFSTLIDGYCKAGKMEA 456

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDA 402
           A     E+V  G +P    Y  + D 
Sbjct: 457 AMGLYTEMVIKGLLPDVVAYTALIDG 482



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 113/258 (43%), Gaps = 38/258 (14%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CLI    + G ++EAL+    +++    PDV+ Y+++I  LC V    +A  LL++M+  
Sbjct: 338 CLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKK 397

Query: 234 GFRCPPDVYTYTILISSYCKYG-MQTG---CRKAIRR--------------------RIW 269
           GF   P+  TY  LI  YCK G M+     C +   +                    ++ 
Sbjct: 398 GFL--PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKME 455

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
            A  L+  M+ KG +PDVVAY  LIDG  K    + A  L  +M + G  PN  T +  I
Sbjct: 456 AAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLI 515

Query: 330 RYYSVVNEIDKAIEMM----------RKMQNLNHGV--PTSSSYTPIIHALCEAGRVLEA 377
                   I  AI++            K   L+  +  P    YT +I  LC  GR+ +A
Sbjct: 516 DGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKA 575

Query: 378 RDFLAELVDGGSVPREYT 395
             F +++   G  P  +T
Sbjct: 576 SKFFSDMRCSGLRPDVFT 593



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 77/202 (38%), Gaps = 22/202 (10%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L    + T LI    ++G   EA      M++    P+V+  + +I+ LC+ G  + A
Sbjct: 468 GLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDA 527

Query: 224 -RFLLEQM----------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            +  L +           EL    C P+   YT LI   C  G           RI++A+
Sbjct: 528 IKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDG-----------RIFKAS 576

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
             F  M   G  PDV     +I G  +   +   + L  D+ K G IPN   Y    + Y
Sbjct: 577 KFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGY 636

Query: 333 SVVNEIDKAIEMMRKMQNLNHG 354
                +  A+     +  +  G
Sbjct: 637 EESGYLKSALRCSEDLSGIGIG 658


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 14/199 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 192 QPDVYTYSVLINGLCKESKIDDANELFDEMLVKGL--VPNSVTFTTLIDGHCKNG----- 244

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +   PD++ YN LI G CK   +++A  L D+M+ KG  P
Sbjct: 245 ------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKP 298

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +++TY + I       ++D A E  ++M   N  +     YT +I  LC  G  ++A   
Sbjct: 299 DKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLD-DVVYTALISGLCREGXSVDAEKM 357

Query: 381 LAELVDGGSVPREYTYKLV 399
           L E++  G  P   TY ++
Sbjct: 358 LREMLSVGLKPDARTYTMI 376



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 125 LYFFNILMHRFCKDGDIRIAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 174

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +I+ A ELFD+M  KG +P
Sbjct: 175 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVP 228

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A 
Sbjct: 229 NSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAH 285

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
             + E+   G  P + TY  + D 
Sbjct: 286 HLIDEMSMKGLKPDKITYTTLIDG 309



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 14/204 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G +  + + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A
Sbjct: 225 GLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 284

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L+++M + G +  PD  TYT LI   CK G      +  +R I E   L         
Sbjct: 285 HHLIDEMSMKGLK--PDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRL--------- 333

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
             D V Y  LI G C+      A ++  +M   G  P+  TY   I  +    ++ K  +
Sbjct: 334 --DDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 391

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHA 367
           ++++MQ   H VP+  +Y  +++ 
Sbjct: 392 LLKEMQRDGH-VPSVVTYNVLMNG 414



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 105/242 (43%), Gaps = 30/242 (12%)

Query: 188 ALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
            L ++  M  F C   +   A +++   + R G  + +       E  G +   D+Y ++
Sbjct: 1   TLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAIFETKGTQ-RSDLYVFS 59

Query: 246 ILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GFVPDVVA- 289
            LI++Y + G       C +  R  + W           HL +L  FK   GF  +++  
Sbjct: 60  GLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILEC 119

Query: 290 --------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
                   +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  + ++D+ 
Sbjct: 120 GYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEG 179

Query: 342 IEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
             +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G VP   T+  + 
Sbjct: 180 FRLKSAM--LASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLI 237

Query: 401 DA 402
           D 
Sbjct: 238 DG 239


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 136/281 (48%), Gaps = 24/281 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +  ++      L+ M+  G    V T   T LI  L +    ++A+ T  RM +  C 
Sbjct: 20  LCKSGDLDAAQALLQKMADAGCAPNVVT--YTALIDGLCKARRPHDAIQTVKRMLRSGCE 77

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  YN +I+ LC     + A  +L+++   GF   P+  TY+ L+   C+        
Sbjct: 78  PDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGF--APNHITYSTLVIWNCR-------- 127

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAY-NCLIDGC---CKTYRIERALELFDDMNKKG 317
              RRR+ +A  L R M+ +G V ++V Y +C+   C   C++ R E      D+M + G
Sbjct: 128 ---RRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYE--CRDGDEMIESG 182

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLE 376
            IP+ VTYN+FI       ++DK +EM+ +M     G+P    ++  II  LC+A R+ +
Sbjct: 183 RIPDVVTYNTFISGLCKAGKLDKGLEMLEEMD--RGGIPPDVVTFCSIISGLCKANRIDD 240

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           A      +++ G VP   TY ++ D L+ A     +D+ L 
Sbjct: 241 AFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLE 281



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 119/251 (47%), Gaps = 15/251 (5%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFN 221
           +G L    S   +I  L + G V++A     +M     C+PDV  +N +I+  C+ G  +
Sbjct: 323 SGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLS 382

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +A  LL +M+     C PDV TY  LI    K+G            + +A  L + M   
Sbjct: 383 QAHQLLIEMKAKNI-CVPDVVTYNTLIDGQSKFG-----------SLKQAKLLLQEMQAV 430

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G  P+VV Y  LI+G  K    E A  LFD+M+ KGC P+ +TYN+ +  +S    + KA
Sbjct: 431 GCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKA 490

Query: 342 IEMMRKMQN-LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
             + ++++N  ++  P + +Y  +I   C A    +    L E+   G     YTY ++ 
Sbjct: 491 EGVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLI 550

Query: 401 DALNAAEE-PS 410
             L   EE PS
Sbjct: 551 AKLAETEEVPS 561



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 100/239 (41%), Gaps = 51/239 (21%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  YN  I+ LC+ G  +K   +LE+M+  G   PPDV T+  +IS  CK        
Sbjct: 185 PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGI--PPDVVTFCSIISGLCK-------- 234

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN--KKGCI 319
                RI +A  +F+ ML +G VPD + Y+ ++D   +  R++   E+ + M   K GC+
Sbjct: 235 ---ANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCV 291

Query: 320 -----------------------------------PNRVTYNSFIRYYSVVNEIDKAIEM 344
                                              PN ++YN  I        +D A ++
Sbjct: 292 MEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKL 351

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL-VDGGSVPREYTYKLVCDA 402
            RKM +     P    +  +I   C+AGR+ +A   L E+      VP   TY  + D 
Sbjct: 352 SRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDG 410



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 14/207 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L++M   G    V T +   LI    + G+  EA + F  M    C PD+  YN V++A
Sbjct: 423 LLQEMQAVGCKPNVVTYAA--LINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSA 480

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
             + G  +KA  + +Q++     C PD  TY ILI  YC+                +   
Sbjct: 481 FSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCR-----------AEDTEQGLT 529

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRI-ERALELFDDMNKKGCIPNRVTYNSFIRYY 332
           L + M  +G+  D   YN LI    +T  +  +AL ++  M  + C+P+   +NS +R +
Sbjct: 530 LLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRLF 589

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSS 359
               +++ A  M+++M    H V  S+
Sbjct: 590 LRTGDVNSARSMVQEMNEKGHLVDASN 616



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 12/156 (7%)

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           V TYT LI   CK G            +  A  L + M   G  P+VV Y  LIDG CK 
Sbjct: 10  VVTYTTLIDGLCKSG-----------DLDAAQALLQKMADAGCAPNVVTYTALIDGLCKA 58

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
            R   A++    M + GC P+ VTYNS I    + N +D A  +++++   N   P   +
Sbjct: 59  RRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVR-NGFAPNHIT 117

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           Y+ ++   C   R+ +AR  + E++  GSV     Y
Sbjct: 118 YSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVY 153



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           M   G+   VV Y  LIDG CK+  ++ A  L   M   GC PN VTY + I        
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 338 IDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
              AI+ +++M  L  G  P   +Y  +IH LC A R+ +A   L ELV  G  P   TY
Sbjct: 61  PHDAIQTVKRM--LRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITY 118

Query: 397 K 397
            
Sbjct: 119 S 119



 Score = 41.6 bits (96), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 33/66 (50%)

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
           +YT +I  LC++G +  A+  L ++ D G  P   TY  + D L  A  P      +++ 
Sbjct: 12  TYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRM 71

Query: 420 IRDGIE 425
           +R G E
Sbjct: 72  LRSGCE 77


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 118/258 (45%), Gaps = 15/258 (5%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           N V+     +++M  +G G   T  + T LIK LG+ G V++A + F+ M +  C+PDV 
Sbjct: 279 NKVEAALRLVEEM--KGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVV 336

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
             N +IN L R G    A  L  +M+    +C P+V TY  +I +  +            
Sbjct: 337 LINNLINILGRAGRLEDALKLFGKMD--SLQCAPNVVTYNTVIKAIFESKAPAS------ 388

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
               EA   F  M   G  P    Y  LIDG CKT R+E+AL L ++M++KG  P    Y
Sbjct: 389 ----EAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAY 444

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            S I         + A E+ ++++  N G  ++  Y  +I      GR+ +A D   E  
Sbjct: 445 CSLIDSLGRAKRYEAANELFQELKE-NCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXE 503

Query: 386 DGGSVPREYTYKLVCDAL 403
             G  P  YTY  +   +
Sbjct: 504 KLGCSPDVYTYNALMSGM 521



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 126/295 (42%), Gaps = 17/295 (5%)

Query: 117 EFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLI 176
           +F+ W  +   F H+  T   +         V  +W  ++DM R      V  +  + ++
Sbjct: 109 QFFKWAGKRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCS--VGPAEWSEIL 166

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
           K+LG+  +VN+AL+ FY++K  +C P    YN +I  L   G+  K   L  ++   G  
Sbjct: 167 KILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEG-N 225

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
           C PD  TY+ LIS++ K             R   A  LF  M   G  P    Y  ++  
Sbjct: 226 CSPDTITYSALISAFGKL-----------ERYDFAFRLFDEMKENGLHPTEKIYTTILAM 274

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV- 355
             K  ++E AL L ++M  KGC P   TY   I+    V  +D A  +   M  L  G  
Sbjct: 275 YFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNM--LKDGCK 332

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
           P       +I+ L  AGR+ +A     ++      P   TY  V  A+  ++ P+
Sbjct: 333 PDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPA 387



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 19/235 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F + N V+     L++M  +G       ++   LI  LG       A   F  +K+   R
Sbjct: 416 FCKTNRVEKALLLLEEMDEKGFPP--CPAAYCSLIDSLGRAKRYEAANELFQELKENCGR 473

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
                Y V+I      G  + A  L  + E  G  C PDVYTY  L+S   + GM     
Sbjct: 474 SSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLG--CSPDVYTYNALMSGMIRAGM----- 526

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 I EA+ L R M   G  PD+ ++N +++G  KT   +RA+E+F  M +   +P+
Sbjct: 527 ------IDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPD 580

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
            V+YN+ +   S     + A ++MR+M+ L      S +Y+ I+ A+   G+V E
Sbjct: 581 AVSYNTILSCLSRAGMFEMAAKLMREMK-LKGFEYDSITYSSILEAV---GKVDE 631



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 113/294 (38%), Gaps = 63/294 (21%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL-------------------- 214
           LI +LG  G + +AL  F +M   +C P+V  YN VI A+                    
Sbjct: 341 LINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKAN 400

Query: 215 ----------------CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG--- 255
                           C+     KA  LLE+M+  GF  PP    Y  LI S  +     
Sbjct: 401 GIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGF--PPCPAAYCSLIDSLGRAKRYE 458

Query: 256 --------MQTGCRKAIRR-------------RIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                   ++  C ++  R             R+ +A  LF      G  PDV  YN L+
Sbjct: 459 AANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALM 518

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G  +   I+ A  L  +M + GC P+  ++N  +   +      +AIEM  KM+  +  
Sbjct: 519 SGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKE-SEI 577

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           +P + SY  I+  L  AG    A   + E+   G      TY  + +A+   +E
Sbjct: 578 MPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAVGKVDE 631


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 117/275 (42%), Gaps = 62/275 (22%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I+ L +EG V EAL     M +   RPD   YN +I   C +G  ++A  L  ++E+
Sbjct: 342 TIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESL--RLEI 399

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
               C P+ +TY+ILI   CK G+           I +A H+F+ M   G +P VV +N 
Sbjct: 400 SKHDCFPNNHTYSILICGMCKNGL-----------INKAQHIFKEMEKLGCLPSVVTFNS 448

Query: 293 LIDGCCKTYRIERALELFDDMN-------------------------------------- 314
           LI+G CK  R+E A  LF  M                                       
Sbjct: 449 LINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMIL 508

Query: 315 ----------KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
                       G +P+  TYN  I  +     I+ A ++ ++MQ   H +P S +Y  +
Sbjct: 509 KAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGH-MPDSVTYGTL 567

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           I  L  AGR  +A +   ++V  G VP   TYK +
Sbjct: 568 IDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTI 602



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 94/223 (42%), Gaps = 61/223 (27%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           + LI  + + GL+N+A   F  M++  C P V  +N +IN LC+     +AR L  QME+
Sbjct: 412 SILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEI 471

Query: 233 PGFRCP------------------------------------------------PDVYTY 244
              R P                                                PD+ TY
Sbjct: 472 --VRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTY 529

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
            ILI+ +CK+G   G  K           LF+ M  KG +PD V Y  LIDG  +  R E
Sbjct: 530 NILINGFCKFGNINGAFK-----------LFKEMQLKGHMPDSVTYGTLIDGLYRAGRNE 578

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
            ALE+F+ M KKGC+P   TY + + +    N I  A+ +  K
Sbjct: 579 DALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMK 621



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 128/300 (42%), Gaps = 57/300 (19%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           W  L+++  + +   +++ + + LI+   E G+  +A+ +F  M+ F C+PD++A+N+++
Sbjct: 113 WKVLQEL--KNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLIL 170

Query: 212 NALCRVGNFNKARFLLEQMELPGFRC--PPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           + L R   F  A  +  QM     +C   PDV TY ILI   CK      C+        
Sbjct: 171 HFLVRKEAFLLALAVYNQM----LKCNLNPDVVTYGILIHGLCK-----TCKTQ------ 215

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A  LF  M  +G +P+ + Y+ ++ G C+  +I  A  LF  M   GC  + +TYN  +
Sbjct: 216 DALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLL 275

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNH--GV-------------------------------- 355
             +     +D A  +++ +    H  GV                                
Sbjct: 276 NGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIK 335

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSL 411
           P    YT +I  L + GRV EA   L E+ + G  P    Y    K  CD     E  SL
Sbjct: 336 PDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESL 395



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 117/253 (46%), Gaps = 27/253 (10%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G ++      CLI  L       EA   + +M +   +PDV  Y ++I  L + G   +
Sbjct: 297 DGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTE 356

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK- 281
           A  LL +M   G R  PD   Y  LI  +C  G              EA  L RL + K 
Sbjct: 357 ALTLLGEMTERGLR--PDTICYNALIKGFCDMGYLD-----------EAESL-RLEISKH 402

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
              P+   Y+ LI G CK   I +A  +F +M K GC+P+ VT+NS I      N +++A
Sbjct: 403 DCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEA 462

Query: 342 ------IEMMRK---MQNLNHG---VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                 +E++RK      L+ G   V   +S   ++  LCE+G +L+A   L +LVD G 
Sbjct: 463 RLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGV 522

Query: 390 VPREYTYKLVCDA 402
           +P   TY ++ + 
Sbjct: 523 LPDIRTYNILING 535



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 121/265 (45%), Gaps = 30/265 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L +     +AL  F  M      P+   Y++V++ LC+      A+ L  +M   G
Sbjct: 204 LIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASG 263

Query: 235 FRCPPDVYTYTILISSYCKYG---------------------MQTGC--RKAIRRRIWEA 271
             C  D+ TY +L++ +CK G                     +  GC      R R +E 
Sbjct: 264 --CNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEE 321

Query: 272 NHL-FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
            H+ ++ ML +   PDV+ Y  +I G  +  R+  AL L  +M ++G  P+ + YN+ I+
Sbjct: 322 AHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIK 381

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            +  +  +D+A E +R   + +   P + +Y+ +I  +C+ G + +A+    E+   G +
Sbjct: 382 GFCDMGYLDEA-ESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCL 440

Query: 391 PREYTYKLVCDAL---NAAEEPSLL 412
           P   T+  + + L   N  EE  LL
Sbjct: 441 PSVVTFNSLINGLCKANRLEEARLL 465


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 114/248 (45%), Gaps = 21/248 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+K L   G +++A +T   M + +  PDV+ YNVVI+ LC+    ++A    E M    
Sbjct: 16  LVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMP--- 72

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDV TY  L+   CK G           R+ +A  LF  M   G  P  V Y  LI
Sbjct: 73  ---EPDVVTYNTLLGGLCKNG-----------RVAQACSLFGSMEGAGITPSDVTYTTLI 118

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  CK  + E A  L   M  + C P   +Y S I       ++D+A ++  +M+ L   
Sbjct: 119 DVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMK-LAGC 177

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE---EPSL 411
            P   +Y  +IH LC   R+ EA+D L  +V+    P + T+  + + L   +   E  +
Sbjct: 178 KPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFV 237

Query: 412 LDDGLRKR 419
           L  G+ K+
Sbjct: 238 LFQGMAKQ 245



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 113/267 (42%), Gaps = 16/267 (5%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           S  G G   +  + T LI V  +      A      M   +C P VY+Y  +IN LC+  
Sbjct: 101 SMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNR 160

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
             ++A  L E+M+L G  C PD  TY  LI   C           +++R+ EA  L  +M
Sbjct: 161 KVDQAYQLFEEMKLAG--CKPDRVTYNTLIHGLC-----------VKQRLHEAKDLLTVM 207

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           +   F PD + +  LI+G C T RI+ A  LF  M K+GC P+ VT+   +    +  ++
Sbjct: 208 VENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKL 267

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
             A+ ++R        V     YTPI   L        A   L ++   G  P   TY  
Sbjct: 268 RPALSVVRNYPACPEAVIL---YTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTA 324

Query: 399 VCDALNAAEEPSLLDDGLRKRIRDGIE 425
               L   +E        R+ +  GIE
Sbjct: 325 FFKGLGDWKEGMRAYREFRRMLEQGIE 351



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 18/204 (8%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C+P+  +Y  ++ ALCR G  +KA   + +M     +  PDV+TY ++I + CK      
Sbjct: 6   CKPNALSYCYLVKALCRTGKIDKACSTIAEMARE--KLVPDVFTYNVVIDTLCK------ 57

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                 RRI  A   F  M      PDVV YN L+ G CK  R+ +A  LF  M   G  
Sbjct: 58  -----ARRISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGIT 108

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P+ VTY + I  +  + + + A  +++ M +     PT  SY  II+ LC+  +V +A  
Sbjct: 109 PSDVTYTTLIDVFCKMCQFETAYGLLQLMAS-RKCSPTVYSYCSIINGLCKNRKVDQAYQ 167

Query: 380 FLAELVDGGSVPREYTYKLVCDAL 403
              E+   G  P   TY  +   L
Sbjct: 168 LFEEMKLAGCKPDRVTYNTLIHGL 191



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 107/244 (43%), Gaps = 47/244 (19%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC--------------- 215
           + T LI+ L     + EA   F  M +  C PD+  + V+++ LC               
Sbjct: 218 TFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNY 277

Query: 216 ------------------RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
                             R   F++A  LL++M   G    P+V TYT        +   
Sbjct: 278 PACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGV--APNVVTYTAFFKGLGDW--- 332

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
              ++ +R     A   FR ML +G  PD+VAYN L+DG CK  R++ A ++   M++ G
Sbjct: 333 ---KEGMR-----AYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSG 384

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             PN VTYN+ + ++    +++   E++  M +     P  ++++ ++  L   G+V  A
Sbjct: 385 LPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQ-PDVATWSTLVAGLFRVGQVDAA 443

Query: 378 RDFL 381
             FL
Sbjct: 444 YSFL 447



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 113/290 (38%), Gaps = 51/290 (17%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           VF +    +  +  L+ M+ R      T  S   +I  L +   V++A   F  MK   C
Sbjct: 120 VFCKMCQFETAYGLLQLMASRKCSP--TVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGC 177

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PD   YN +I+ LC     ++A+ LL  M    F+  PD  T+T LI   C        
Sbjct: 178 KPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQ--PDKITFTALIEGLCTTD----- 230

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI----------------- 303
                 RI EA  LF+ M  +G  PD+V +  L+   C   ++                 
Sbjct: 231 ------RIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACPEAV 284

Query: 304 ----------------ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
                           +RA  L   M ++G  PN VTY +F +      E  +A    R+
Sbjct: 285 ILYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRR 344

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           M  L  G+ P   +Y  ++   C+A R+  A   +  +   G  P   TY
Sbjct: 345 M--LEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTY 392



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 15/164 (9%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L+ M+RRG    V T   T   K LG+      A   F RM +    PD+ AYNV+++ 
Sbjct: 306 LLQKMARRGVAPNVVT--YTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDG 363

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+    + A  ++  M+  G   PP++ TY  L+  +C+ G           ++     
Sbjct: 364 FCKANRLDMAEKMVRYMDQSGL--PPNIVTYNTLVGHHCRKG-----------KVEAIGE 410

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
           L   M+ +G  PDV  ++ L+ G  +  +++ A    +    +G
Sbjct: 411 LLHTMVSRGRQPDVATWSTLVAGLFRVGQVDAAYSFLNLAMSQG 454


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 134/316 (42%), Gaps = 30/316 (9%)

Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
            + A + +HW+E       N  T  E+      G +++      + M + G   L T  +
Sbjct: 389 FSTALKIFHWMEGHGSL-ANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMG--PLPTVVT 445

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              LI     +G VN A      MK+  C PD + YN +++   + G    A F  ++M 
Sbjct: 446 YNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMV 505

Query: 232 LPGFRCPPDVYTYTILISSYCKYGM------------QTGCRKAIR------------RR 267
             G    P+  +YT LI  + K G             + GC   +              R
Sbjct: 506 ECGLN--PNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENR 563

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
             EA  +   M+ +G +P+V+ Y  LIDG C+  R + A ++F DM K+ C+PN  TY+S
Sbjct: 564 FSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSS 623

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            I       + D+A  ++++M+      P   ++T +I      GR+  A   L  +VD 
Sbjct: 624 LIYGLCQEGKADEAEILLKEMERKGLA-PDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDM 682

Query: 388 GSVPREYTYKLVCDAL 403
           G  P   TY ++   L
Sbjct: 683 GCKPNYRTYSVLLKGL 698



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 110/226 (48%), Gaps = 14/226 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + LI  L  EG V+EAL     M +    P VY Y + I ALC + +  +A  L+ +M
Sbjct: 270 TYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARM 329

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  G  C P+V TYT LIS   + G           ++  A  L+  ML +G VP+ V Y
Sbjct: 330 KKRG--CRPNVQTYTALISGLSRLG-----------KLEVAIGLYHKMLKEGLVPNTVTY 376

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI+  C   R   AL++F  M   G + N  TYN  I+   +  +I+KA+ +  KM  
Sbjct: 377 NALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLK 436

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +   +PT  +Y  +I+     G V  A   L  + + G  P E+TY
Sbjct: 437 MG-PLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTY 481



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 169/381 (44%), Gaps = 33/381 (8%)

Query: 29  DAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHR----TPLRQRILK 84
           + K  +   K  +   I +V    +S+ +FF+     I ++  ++H       +  R+++
Sbjct: 65  ELKQLSPQLKAHHVAEIVAVHKDTESVIQFFYW----ISKRPFYKHNMNCFISMLNRLVR 120

Query: 85  KEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFAR 144
              +  A+++ +L   A R+ +++     +  +F + +     F  +  +C  + I  A+
Sbjct: 121 DRVFAPADHIRILMIKACRNEEEI----RRVADFLNEISGM-GFGFSLYSCNTLLIQLAK 175

Query: 145 GNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
              V+G  +  K M   G    L+T ++   LI +L ++G V EA     ++ Q+   PD
Sbjct: 176 FEMVEGARNLYKQMLNSGIQPSLLTFNT---LINILSKKGKVREAELILSQIFQYDLSPD 232

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V+ Y  +I   CR  N + A  + ++M   G  C P+  TY+ LI+  C  G        
Sbjct: 233 VFTYTSLILGHCRNRNLDLAFGVFDRMVKEG--CDPNSVTYSTLINGLCNEG-------- 282

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              R+ EA  +   M+ KG  P V  Y   I   C     E A+EL   M K+GC PN  
Sbjct: 283 ---RVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQ 339

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLA 382
           TY + I   S + +++ AI +  KM  L  G VP + +Y  +I+ LC  GR   A     
Sbjct: 340 TYTALISGLSRLGKLEVAIGLYHKM--LKEGLVPNTVTYNALINELCVGGRFSTALKIFH 397

Query: 383 ELVDGGSVPREYTYKLVCDAL 403
            +   GS+    TY  +   L
Sbjct: 398 WMEGHGSLANTQTYNEIIKGL 418



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 114/269 (42%), Gaps = 20/269 (7%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M +RG    V T   T LI  L   G +  A+  +++M +    P+   YN +IN LC  
Sbjct: 329 MKKRGCRPNVQT--YTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVG 386

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G F+ A  +   ME  G     +  TY  +I   C  G            I +A  LF  
Sbjct: 387 GRFSTALKIFHWME--GHGSLANTQTYNEIIKGLCLGG-----------DIEKAMVLFEK 433

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           ML  G +P VV YN LI+G      +  A  L D M + GC P+  TYN  +  +S   +
Sbjct: 434 MLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGK 493

Query: 338 IDKAIEMMRKMQ--NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
           ++ A    ++M    LN   P   SYT +I    + G+V  A   L  + + G  P   +
Sbjct: 494 LESASFYFQEMVECGLN---PNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVES 550

Query: 396 YKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           Y  V + L+     S  +    K +  G+
Sbjct: 551 YNAVINGLSKENRFSEAEKICDKMVEQGL 579



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 16/223 (7%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
            +Y+ N ++  L +      AR L +QM   G +  P + T+  LI+   K G       
Sbjct: 162 SLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQ--PSLLTFNTLINILSKKG------- 212

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               ++ EA  +   +      PDV  Y  LI G C+   ++ A  +FD M K+GC PN 
Sbjct: 213 ----KVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNS 268

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
           VTY++ I        +D+A++M+ +M  +  G+ PT  +YT  I ALC      EA + +
Sbjct: 269 VTYSTLINGLCNEGRVDEALDMLEEM--IEKGIEPTVYTYTLPITALCAIEHEEEAIELV 326

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
           A +   G  P   TY  +   L+   +  +      K +++G+
Sbjct: 327 ARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGL 369


>gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Vitis vinifera]
          Length = 450

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 116/252 (46%), Gaps = 17/252 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+K     G + EA   F +MK+ +C  DV  Y  V++     G   KA+ +  +M   G
Sbjct: 205 LLKGFFRAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEG 264

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P V TY   I   CK           +  +  A  +F  ML KG++P+   YN +I
Sbjct: 265 --VLPSVATYNAFIQVLCK-----------KDNVENAISVFEEMLRKGYMPNSTTYNVVI 311

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
            G C   R+E+A+E    M    C PN   YN  IRY+    EI+K + +  KM + +  
Sbjct: 312 RGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKMGDAD-C 370

Query: 355 VPTSSSYTPIIHALC---EAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
           +P   +Y  +I A+    ++  +L A   L E+V+ G +PR++T+  V D L        
Sbjct: 371 LPNLDTYNILISAMFVRKKSDYLLTAGKLLIEMVERGFLPRKFTFNRVLDGLLLTGNQDF 430

Query: 412 LDDGLRKRIRDG 423
             + LR + R G
Sbjct: 431 AKEILRLQSRCG 442



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 137/316 (43%), Gaps = 40/316 (12%)

Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           KA +F+  ++    + H   +      +  R  + K LW  +  M  R  G    T ++ 
Sbjct: 83  KALQFFKSLDYHPTYAHVSSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAI- 141

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA---------- 223
            + +     G  + A+  F+ M +  C  D+ ++N +++ LC+      A          
Sbjct: 142 -ITERYVSAGKPDRAIKIFFSMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRG 200

Query: 224 --RFLLEQ--------------MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
             R LL+               +++   +C  DV TYT ++  +   G+    RKA R  
Sbjct: 201 RFRILLKGFFRAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGF---GVAGEVRKAQR-- 255

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
                 +F  M+ +G +P V  YN  I   CK   +E A+ +F++M +KG +PN  TYN 
Sbjct: 256 ------VFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNV 309

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
            IR    V  ++KA+E M +M++ +   P    Y  +I   C+A  + +  +   ++ D 
Sbjct: 310 VIRGLCHVGRMEKAMEFMARMKD-DECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKMGDA 368

Query: 388 GSVPREYTYKLVCDAL 403
             +P   TY ++  A+
Sbjct: 369 DCLPNLDTYNILISAM 384



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 18/186 (9%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           V  + +NV+      ++M R+G     TT +V  +I+ L   G + +A+    RMK   C
Sbjct: 278 VLCKKDNVENAISVFEEMLRKGYMPNSTTYNV--VIRGLCHVGRMEKAMEFMARMKDDEC 335

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P+V  YNVVI   C      K   + E+M      C P++ TY ILIS+          
Sbjct: 336 EPNVQIYNVVIRYFCDAEEIEKGLNVFEKM--GDADCLPNLDTYNILISAMF-------- 385

Query: 261 RKAIRRR---IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
              +R++   +  A  L   M+ +GF+P    +N ++DG   T   + A E+    ++ G
Sbjct: 386 ---VRKKSDYLLTAGKLLIEMVERGFLPRKFTFNRVLDGLLLTGNQDFAKEILRLQSRCG 442

Query: 318 CIPNRV 323
            +P R+
Sbjct: 443 RLPRRL 448


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 113/253 (44%), Gaps = 14/253 (5%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
            D  + M++ G        +   +I    +EG   +A + F+ M +   +PDV  YN++I
Sbjct: 248 LDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLII 307

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           +ALC+    +KA  +L QM   G +  PD  TY  +I  Y   G           R+ EA
Sbjct: 308 DALCKARAMDKAELVLRQMTTNGAQ--PDTVTYNCMIHGYATLG-----------RLKEA 354

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +FR M  +G +P++V  N  +   CK  R + A E+FD M  KG  P+ V+Y + +  
Sbjct: 355 AKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHG 414

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           Y+        I +   M++ N        +  +IHA  + G V +A     E+   G  P
Sbjct: 415 YASEGWFADMIGLFNSMKS-NGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSP 473

Query: 392 REYTYKLVCDALN 404
              TY  V  A +
Sbjct: 474 DVVTYSTVISAFS 486



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 13/227 (5%)

Query: 171 SVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           + + L+K L       EA+    +RM +  C P+V++Y++++  LC      +A  L + 
Sbjct: 194 TASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQM 253

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           M   G  C P+V  Y  +I  + K G +TG          +A  LF  M  +G  PDVV 
Sbjct: 254 MAKEGGACSPNVVAYNTVIHGFFKEG-ETG----------KACSLFHEMTRQGVKPDVVT 302

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN +ID  CK   +++A  +   M   G  P+ VTYN  I  Y+ +  + +A +M RKM+
Sbjct: 303 YNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMK 362

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +    +P        + +LC+ GR  EA +    +   G  P   +Y
Sbjct: 363 SRGL-IPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSY 408



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 125/283 (44%), Gaps = 33/283 (11%)

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
           S + NG          LI    + G+V++A+  F  M+Q    PDV  Y+ VI+A  R+G
Sbjct: 430 SMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMG 489

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR--------KAIRR---- 266
               A     QM   G +  P+   Y  +I  +C +G     +        K I R    
Sbjct: 490 RLTDAMEKFNQMVARGIQ--PNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIV 547

Query: 267 -------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        R+ +A+ +F L+   G  PDV+ +  LIDG C   ++++A ++ D M
Sbjct: 548 FFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAM 607

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAG 372
              G   + VTY++ +  Y     I+  + + R+MQ    GV P + +Y  ++  L  AG
Sbjct: 608 EVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQ--RKGVKPNTVTYGIMLAGLFRAG 665

Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL---NAAEEPSLL 412
           R + AR    E+++ G+      Y ++   L   N A+E  +L
Sbjct: 666 RTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIIL 708



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 138/325 (42%), Gaps = 55/325 (16%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG    T +  C+I      G + EA   F +MK     P++   N  + +LC+ G   +
Sbjct: 329 NGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKE 388

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----------------MQTGCR----- 261
           A  + + M   G +  PD+ +Y  L+  Y   G                +   CR     
Sbjct: 389 AAEIFDSMTAKGHK--PDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNIL 446

Query: 262 ---KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
               A R  + +A  +F  M  +G  PDVV Y+ +I    +  R+  A+E F+ M  +G 
Sbjct: 447 IHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGI 506

Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS--YTPIIHALCEAGRVLE 376
            PN   Y+S I+ + +   + KA E++ +M  +N G+P      +  +I++LC+ GRV++
Sbjct: 507 QPNTAVYHSIIQGFCMHGGLVKAKELVSEM--INKGIPRPDIVFFNSVINSLCKDGRVMD 564

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDA-------------LNAAE---------EPSLLDD 414
           A D    + D G  P   T+  + D              L+A E           S L D
Sbjct: 565 AHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLD 624

Query: 415 GLRK--RIRDGIE-YRFRQVMKVKP 436
           G  K  RI DG+  +R  Q   VKP
Sbjct: 625 GYFKNGRINDGLTLFREMQRKGVKP 649



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 130/296 (43%), Gaps = 35/296 (11%)

Query: 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG--N 163
           Q V  G+   T  YH + + F        C   G+V A+        + + +M  +G   
Sbjct: 500 QMVARGIQPNTAVYHSIIQGF--------CMHGGLVKAK--------ELVSEMINKGIPR 543

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
            ++V  +SV   I  L ++G V +A   F  +     RPDV  +  +I+  C VG  +KA
Sbjct: 544 PDIVFFNSV---INSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKA 600

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             +L+ ME+ G     D+ TY+ L+  Y K G           RI +   LFR M  KG 
Sbjct: 601 FKILDAMEVVGVE--TDIVTYSTLLDGYFKNG-----------RINDGLTLFREMQRKGV 647

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            P+ V Y  ++ G  +  R   A + F +M + G       Y   +      N  D+AI 
Sbjct: 648 KPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAII 707

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           + +K+  +N     +   T +I+A+ +  R  EA++  A +   G +P E TY ++
Sbjct: 708 LFQKLGTMNVKFSITILNT-MINAMYKVQRKEEAKELFATISASGLLPNESTYGVM 762



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 13/190 (6%)

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
           P  V+TY+IL+   C+            RR      LF  +L  G     +  + L+   
Sbjct: 154 PLTVHTYSILMDCCCRA-----------RRPDLGLVLFGCILRTGLKIHQITASTLLKCL 202

Query: 298 CKTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV- 355
           C   R E A+  L   M++ GC+PN  +Y+  ++     +   +A+++ + M        
Sbjct: 203 CYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACS 262

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415
           P   +Y  +IH   + G   +A     E+   G  P   TY L+ DAL  A      +  
Sbjct: 263 PNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELV 322

Query: 416 LRKRIRDGIE 425
           LR+   +G +
Sbjct: 323 LRQMTTNGAQ 332


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 116/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M     +PDVY Y+V+IN LC+    N A  L  +M   G    P+  
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G            I  A   ++ ML +GF PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKTG-----------SIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A+   ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC  G+ ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 16/196 (8%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           GNG +    + T LI    + G ++ A+ T+  M +    PD+  YN +I  LC+ G+  
Sbjct: 234 GNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLK 293

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLF 280
           +A+ L+++M + G +  PD  TYT LI   CK G ++T      R+R+ + N   RL   
Sbjct: 294 QAQDLIDEMSMKGLK--PDKITYTTLIDGSCKEGDLETALY--YRKRMIKEN--IRL--- 344

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
                D VAY  LI G C+  +   A ++  +M   G  P+  TY   I  +    ++  
Sbjct: 345 -----DDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKT 399

Query: 341 AIEMMRKMQNLNHGVP 356
             +++++MQ   H VP
Sbjct: 400 GSKLLKEMQRDGH-VP 414


>gi|357442157|ref|XP_003591356.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480404|gb|AES61607.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 138/287 (48%), Gaps = 21/287 (7%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           N+  EF+ +  R   F+H   +   M  +  R      +W+ L + +RR +  ++T  +V
Sbjct: 75  NQTLEFFRYTGRRKGFYHTAYSLDTMLYILGRSRMFDHVWELLIE-ARRKDQNVITPRTV 133

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             ++  + +   V + + TF + K+      V  +N ++  LC+  +   AR +   ++ 
Sbjct: 134 MVVLGRVAKVCSVRQTVETFRKFKKIVPDYGVNCFNALLRTLCQEKSMTDARNVYHSLK- 192

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
             FR  P++ T+ IL+S +              + + +A      M   G  PDVV YN 
Sbjct: 193 HNFR--PNLQTFNILLSGW--------------KNVEDAELFVNEMKEMGVEPDVVTYNS 236

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+D  CK   IE+A ++FD+M +K   P+ +TY S I    +V + DKA +++++M+   
Sbjct: 237 LVDVYCKGREIEKAYKVFDEMREKDLSPDVITYTSVIGGLGLVGQPDKARDVLKEMK--E 294

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
           +GV P   +Y   I   C A R+  A + + E+V+ G  P   TY L
Sbjct: 295 YGVYPDVPAYNAAIRNYCIAKRLGIAFELVDEMVNKGLSPNATTYNL 341



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 16/260 (6%)

Query: 140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
           I+ +   NV+    F+ +M   G    V T +    +   G E  + +A   F  M++  
Sbjct: 204 ILLSGWKNVEDAELFVNEMKEMGVEPDVVTYNSLVDVYCKGRE--IEKAYKVFDEMREKD 261

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             PDV  Y  VI  L  VG  +KAR +L++M+  G    PDV  Y   I +YC       
Sbjct: 262 LSPDVITYTSVIGGLGLVGQPDKARDVLKEMKEYG--VYPDVPAYNAAIRNYC------- 312

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
               I +R+  A  L   M+ KG  P+   YN        +  ++ +  L+  M  +GC+
Sbjct: 313 ----IAKRLGIAFELVDEMVNKGLSPNATTYNLFFRVFYWSNDLQSSWNLYKRMMGEGCL 368

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           P   +    IR +    +++ A+++  +M     G  T  S   +   LC+ G+++EA  
Sbjct: 369 PYTQSCMFLIRLFKRHEKMEMALQLWGEMVEKGFGSYTLVS-DVLFDMLCDMGKLMEAEK 427

Query: 380 FLAELVDGGSVPREYTYKLV 399
              E+++ G  P   ++K +
Sbjct: 428 CFLEMIEKGQRPSNVSFKRI 447



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 89/210 (42%), Gaps = 20/210 (9%)

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           MK+    PDV  YN +++  C+     KA  + ++M        PDV TYT +I      
Sbjct: 222 MKEMGVEPDVVTYNSLVDVYCKGREIEKAYKVFDEMREKDL--SPDVITYTSVIGGLGLV 279

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314
           G     R  ++            M   G  PDV AYN  I   C   R+  A EL D+M 
Sbjct: 280 GQPDKARDVLKE-----------MKEYGVYPDVPAYNAAIRNYCIAKRLGIAFELVDEMV 328

Query: 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGR 373
            KG  PN  TYN F R +   N++  +  + ++M  +  G +P + S   +I       +
Sbjct: 329 NKGLSPNATTYNLFFRVFYWSNDLQSSWNLYKRM--MGEGCLPYTQSCMFLIRLFKRHEK 386

Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  A     E+V+ G      +Y LV D L
Sbjct: 387 MEMALQLWGEMVEKGFG----SYTLVSDVL 412



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 102/258 (39%), Gaps = 42/258 (16%)

Query: 127 DFFHNEMTCKEMGI------------VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           + F NEM  KEMG+            V+ +G  ++  +    +M  +     V T   T 
Sbjct: 216 ELFVNEM--KEMGVEPDVVTYNSLVDVYCKGREIEKAYKVFDEMREKDLSPDVIT--YTS 271

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  LG  G  ++A      MK++   PDV AYN  I   C       A  L+++M   G
Sbjct: 272 VIGGLGLVGQPDKARDVLKEMKEYGVYPDVPAYNAAIRNYCIAKRLGIAFELVDEMVNKG 331

Query: 235 FRCPPDVYTYTI----------LISSYCKYGMQTG---------CRKAIR-----RRIWE 270
               P+  TY +          L SS+  Y    G         C   IR      ++  
Sbjct: 332 L--SPNATTYNLFFRVFYWSNDLQSSWNLYKRMMGEGCLPYTQSCMFLIRLFKRHEKMEM 389

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L+  M+ KGF    +  + L D  C   ++  A + F +M +KG  P+ V++     
Sbjct: 390 ALQLWGEMVEKGFGSYTLVSDVLFDMLCDMGKLMEAEKCFLEMIEKGQRPSNVSFKRIKV 449

Query: 331 YYSVVNEIDKAIEMMRKM 348
              + N+ +    + +KM
Sbjct: 450 LMELANKHEAIQNLTQKM 467


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 121/244 (49%), Gaps = 22/244 (9%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R     GL   ++D   R +  +VT  +   LI+ L +   V+ A+     M +    P+
Sbjct: 109 RAAQAVGLLRSMQDCGVRPD--VVTYGT---LIRGLCDAADVDTAVELLNEMCESGIEPN 163

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           V  Y+ +++  C+ G +     + E+M   G    PDV  YT LI S C++G        
Sbjct: 164 VVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIE--PDVVMYTALIDSLCRHG-------- 213

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              ++ +A  +  +M  +G  P+VV YN LI+  CK   +  AL+L  +M++KG  P+ V
Sbjct: 214 ---KVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVV 270

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRK-MQNLNHGVPTSSSYTPIIHALCEAG---RVLEARD 379
           TYN+ I   S V E+D+A+ ++ + MQ      P   ++  +IH LC+ G   + L+ R 
Sbjct: 271 TYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRA 330

Query: 380 FLAE 383
            +AE
Sbjct: 331 MMAE 334



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 16/244 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R   VK     +  M+ RG    V T +V  LI  + +EG V EAL     M +   +
Sbjct: 209 LCRHGKVKKAARVMDMMTERGLEPNVVTYNV--LINSMCKEGSVREALDLRKNMSEKGVQ 266

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  YN +I  L  V   ++A  LLE+M     R  PD+ T+  +I   CK G     R
Sbjct: 267 PDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWM---R 323

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
           +A++ R         +M   G   ++VA+N LI G  + +++++A+EL D+M   G  P+
Sbjct: 324 QALQVRA--------MMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPD 375

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
             TY+  I  +  + ++++A   + +M+  + G+ P    Y P++ A+C+ G + +ARD 
Sbjct: 376 SFTYSILINGFCKMRQVERAESYLSEMR--HQGMEPEPVHYIPLLKAMCDQGMMGQARDL 433

Query: 381 LAEL 384
             E+
Sbjct: 434 FNEM 437



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 15/203 (7%)

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMEL-PGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           D  +YN V+ ALCR G  + A FLL  M   P     P+  +YT L+ + C         
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCA-------- 106

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               RR  +A  L R M   G  PDVV Y  LI G C    ++ A+EL ++M + G  PN
Sbjct: 107 ---DRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPN 163

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            V Y+  +  Y      +   ++  +M     G+ P    YT +I +LC  G+V +A   
Sbjct: 164 VVVYSCLLHGYCKTGRWESVGKVFEEMS--GRGIEPDVVMYTALIDSLCRHGKVKKAARV 221

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           +  + + G  P   TY ++ +++
Sbjct: 222 MDMMTERGLEPNVVTYNVLINSM 244



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 123/261 (47%), Gaps = 24/261 (9%)

Query: 150 GLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
           G W+      ++MS RG    V     T LI  L   G V +A      M +    P+V 
Sbjct: 178 GRWESVGKVFEEMSGRGIEPDVVM--YTALIDSLCRHGKVKKAARVMDMMTERGLEPNVV 235

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
            YNV+IN++C+ G+  +A  L + M   G +  PDV TY  LI+      ++     A+ 
Sbjct: 236 TYNVLINSMCKEGSVREALDLRKNMSEKGVQ--PDVVTYNTLITGLSSV-LEMDEAMALL 292

Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
             + +     R        PD++ +N +I G CK   + +AL++   M + GC  N V +
Sbjct: 293 EEMMQGETRVR--------PDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAF 344

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           N  I     V+++ KA+E+M +M   + G+ P S +Y+ +I+  C+  +V  A  +L+E+
Sbjct: 345 NLLIGGLLRVHKVKKAMELMDEMA--SSGLQPDSFTYSILINGFCKMRQVERAESYLSEM 402

Query: 385 VDGGSVPREYTY----KLVCD 401
              G  P    Y    K +CD
Sbjct: 403 RHQGMEPEPVHYIPLLKAMCD 423



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 29/189 (15%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V +A+     M     +PD + Y+++IN  C++    +A   L +M   G    P+   Y
Sbjct: 357 VKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGME--PEPVHY 414

Query: 245 TILISSYCKYGMQTGCR-------------------------KAIRRRIWEANHLFRLML 279
             L+ + C  GM    R                         K+  ++I E     + M+
Sbjct: 415 IPLLKAMCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAFKSGEKKIAE--EFLKDMI 472

Query: 280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
            +G +PD V Y+  I+   K+  +  A  +   M   G +P+   ++S I+ Y    + +
Sbjct: 473 DEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTE 532

Query: 340 KAIEMMRKM 348
           K +E+ R+M
Sbjct: 533 KILELTREM 541



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 20/177 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+K + ++G++ +A   F  M +  C+ D  AY+ +I+   + G    A   L+ M   G
Sbjct: 417 LLKAMCDQGMMGQARDLFNEMDR-NCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEG 475

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD  TY+I I+ + K G            +  A  + + M   GFVPDV  ++ LI
Sbjct: 476 L--IPDAVTYSIPINMFAKSG-----------DLAAAERVLKQMTASGFVPDVAVFDSLI 522

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            G       E+ LEL  +M  K      V  +  I   ++V  +  +IE  + +Q+L
Sbjct: 523 QGYGAKGDTEKILELTREMTAKD-----VALDPKI-ISTIVTSLGASIEGQKLLQSL 573


>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 620

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 119/257 (46%), Gaps = 29/257 (11%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L++ L ++G V++AL  +  M      P   +YN++I  LC VG+   A  +L  M
Sbjct: 273 TFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSM 332

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAI------------RR 266
           E  G  C P+V TY+ LI  + K G             ++GC+  +            + 
Sbjct: 333 EQHG--CFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKL 390

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
              +A  L   ML +   P+ V +N LI   C   R+ RAL +F +M + GC+PN  TYN
Sbjct: 391 MFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYN 450

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELV 385
             I           A+ M+ +MQ  +HG+  S  +Y  ++  LC+     EA  F+ +++
Sbjct: 451 ELIHGLFREGNCGDALHMVTEMQ--SHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMI 508

Query: 386 DGGSVPREYTYKLVCDA 402
             G  P  +T+  +  A
Sbjct: 509 VQGIQPNAFTFSAIIHA 525



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 106/263 (40%), Gaps = 47/263 (17%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
            +S   ++  L  E  + E  +    M     +P+V  Y  +++A C+ G    A  +L 
Sbjct: 201 AASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILA 260

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M + G  C P+V T+T L+      G           R+ +A  ++R M+ +G+ P  V
Sbjct: 261 RMVITG--CTPNVVTFTALVRGLFDDG-----------RVHDALDMWRWMVAEGWAPSTV 307

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           +YN LI G C    ++ A  + + M + GC PN  TY++ I  +S   ++  AI +   M
Sbjct: 308 SYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDM 367

Query: 349 QN----------------------------------LNHGVPTSSSYTPIIHALCEAGRV 374
                                               L +  P + ++  +I +LC+  RV
Sbjct: 368 SRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRV 427

Query: 375 LEARDFLAELVDGGSVPREYTYK 397
             A     E+   G VP   TY 
Sbjct: 428 GRALGVFHEMRRHGCVPNGRTYN 450



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 114/297 (38%), Gaps = 35/297 (11%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR-MKQFRC 200
            A   +V G+   L++M  RG     T  ++   +      G  + AL TFYR +    C
Sbjct: 65  LAAAGDVDGVQLALQEMRLRG--VPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGC 122

Query: 201 R----------PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
                      P   A      ALC+      AR +L++M   G  CPPD  TY  ++S 
Sbjct: 123 ARPHRAAALQPPHRRAAAGRTWALCQNNRVGAARKMLDEMARKG--CPPDDVTYATIVSV 180

Query: 251 YCKYGMQTGCRKAIRR-------------------RIWEANHLFRLMLFKGFVPDVVAYN 291
            CK        + +                     R+ E   +   M+ +G  P+V+ Y 
Sbjct: 181 LCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYT 240

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            ++D  CK   +  A  +   M   GC PN VT+ + +R       +  A++M R M   
Sbjct: 241 TIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMV-A 299

Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
               P++ SY  +I  LC  G +  A   L  +   G  P   TY  + D  + A +
Sbjct: 300 EGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGD 356



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 120/279 (43%), Gaps = 31/279 (11%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
            ++KG    L  M + G    V T S   LI    + G +  A++ +  M +  C+P+V 
Sbjct: 320 GDLKGASSILNSMEQHGCFPNVRTYST--LIDGFSKAGDLGGAISIWNDMSRSGCKPNVV 377

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC---KYGMQTGCRK 262
            Y  +++  C+   FN+A+ L+++M L    CPP+  T+  LI S C   + G   G   
Sbjct: 378 VYTNMVDVFCKKLMFNQAKSLIDKMLLE--NCPPNTVTFNTLIRSLCDCRRVGRALGVFH 435

Query: 263 AIRRR---------------------IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            +RR                        +A H+   M   G    +V YN ++ G C+T 
Sbjct: 436 EMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTR 495

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN-HGVPTSSS 360
               A+     M  +G  PN  T+++ I  Y    E+  A  M+  M  +N H       
Sbjct: 496 MSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCH--RNILV 553

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           YT ++  LC   ++++A  +L +++  G  P   T+ ++
Sbjct: 554 YTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVL 592



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 13/156 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  EG   +AL     M+       +  YN V++ LC+     +A   + +M + G
Sbjct: 452 LIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQG 511

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P+ +T++ +I +YCK G        +R   W    +   M       +++ Y  L+
Sbjct: 512 IQ--PNAFTFSAIIHAYCKEG-------EVRMAAW----MLGAMNVVNCHRNILVYTILM 558

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
              C   ++  A+     M  +G  PN VT+N  +R
Sbjct: 559 AELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVR 594


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 116/254 (45%), Gaps = 49/254 (19%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           ++G +  A + F  + ++  RP V +YN ++N   R+G+ ++   L   M   G +  PD
Sbjct: 137 KDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ--PD 194

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           VYTY++LI+  CK             +  +AN LF  ML KG VP+ V +  LIDG CK 
Sbjct: 195 VYTYSVLINGXCK-----------ESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKN 243

Query: 301 YRIERALELF-----------------------------------DDMNKKGCIPNRVTY 325
            R++ A+E++                                   D+M+ KG  P+++TY
Sbjct: 244 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITY 303

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            + I       ++D A E  ++M   N  +     YT +I  LC  GR ++A   L E++
Sbjct: 304 TTLIDGCCKEGDLDSAFEHXKRMIQENXRLD-EVXYTALISGLCXEGRSVDAEKMLREML 362

Query: 386 DGGSVPREYTYKLV 399
             G  P   TY ++
Sbjct: 363 SVGLKPDARTYTMI 376



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 125 LYFFNILMHRFCKDGDIRJAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 174

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  + + A ELFD+M  KG +P
Sbjct: 175 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVP 228

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N V + + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A 
Sbjct: 229 NXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAH 285

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
             + E+   G  P + TY  + D 
Sbjct: 286 HLIDEMSXKGLKPDKITYTTLIDG 309



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 14/195 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A  L+++M  
Sbjct: 234 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSX 293

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  PD  TYT LI   CK G      +  +R I E   L           D V Y  
Sbjct: 294 KGLK--PDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRL-----------DEVXYTA 340

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI G C   R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ   
Sbjct: 341 LISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDG 400

Query: 353 HGVPTSSSYTPIIHA 367
           H VP+  +Y  +++ 
Sbjct: 401 H-VPSVVTYNVLMNG 414



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 27/189 (14%)

Query: 239 PDVYTYTILISSYCKYGMQTGC----RKAIRRRIWEA--------NHLFRLMLFK---GF 283
            D+Y ++ LI++Y + G         R     + W           HL +L  FK   GF
Sbjct: 53  SDJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 112

Query: 284 VPDVVA---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
             +++          +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  
Sbjct: 113 YEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIR 172

Query: 335 VNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           + ++D+   +   M  L  GV P   +Y+ +I+  C+  +  +A +   E++  G VP  
Sbjct: 173 LGDLDEGFRLKSAM--LASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNX 230

Query: 394 YTYKLVCDA 402
             +  + D 
Sbjct: 231 VXFTTLIDG 239


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 130/270 (48%), Gaps = 22/270 (8%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           TC   G+   RG+ +K  ++ L++M  +G    V T   T LI  L ++G   +A   F 
Sbjct: 279 TCMIEGLC-KRGS-IKQAFEMLEEMVGKGWKPNVYTH--TSLIDGLCKKGWTEKAFRLFL 334

Query: 194 RM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
           ++ +    +P+V  Y  +I+  CR    N+A  LL +M+  G    P+  TYT LI  +C
Sbjct: 335 KLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGL--VPNTNTYTTLIDGHC 392

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
           K G               A  L  LM  +GF P++  YN +++G CK  R++ A ++ +D
Sbjct: 393 KAG-----------NFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLED 441

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEA 371
             + G  P++ TYN  +  +     I +A+ +  KM  L  G+ P   SYT +I   C  
Sbjct: 442 GFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKM--LKIGIQPDIHSYTTLIAVFCRE 499

Query: 372 GRVLEARDFLAELVDGGSVPREYTY-KLVC 400
            R+ E+  F  E V  G +P   TY  ++C
Sbjct: 500 NRMKESEMFFEEAVRIGIIPTNKTYTSMIC 529



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 132/303 (43%), Gaps = 31/303 (10%)

Query: 118 FYHWVERFFDFFH-----------------NEMTCKEMGIVFARGNNVKGLWDFLKDMSR 160
           F+HW   +  F H                 +E  C+ M  +    + V  L + ++ +  
Sbjct: 101 FFHWAIGYPKFRHFMRLYIVCAMSLIGNRNSEKACEVMRCMVESFSEVGRLKEAVEMVIE 160

Query: 161 RGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
             N  LV  T ++  +IKV  E GLV  A   F  M     +PD  +Y V++   C++GN
Sbjct: 161 MHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPDSISYRVMVVMYCKIGN 220

Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279
             +A   L  M   GF    D  T+T++IS +   G  T       R +W     FR ++
Sbjct: 221 ILEADKWLSVMLERGF--VVDNATFTLIISRFSGKGYTT-------RALW----YFRRLV 267

Query: 280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
             G  P+++ + C+I+G CK   I++A E+ ++M  KG  PN  T+ S I         +
Sbjct: 268 DMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTE 327

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           KA  +  K+    +  P   +YT +I   C   ++  A   L+ + + G VP   TY  +
Sbjct: 328 KAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTL 387

Query: 400 CDA 402
            D 
Sbjct: 388 IDG 390



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 108/234 (46%), Gaps = 16/234 (6%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
            G +  T++ T LI    + G    A      M      P++  YN ++N LC+ G   +
Sbjct: 375 QGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQE 434

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
           A  +LE     G +  PD +TY IL+S +CK   Q   R+A+         LF  ML  G
Sbjct: 435 AYKMLEDGFQNGLK--PDKFTYNILMSEHCK---QENIRQALA--------LFNKMLKIG 481

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PD+ +Y  LI   C+  R++ +   F++  + G IP   TY S I  Y     +  A+
Sbjct: 482 IQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAM 541

Query: 343 EMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
           +   ++   +HG  P S +Y  II  LC+  +  EAR     +++ G VP E T
Sbjct: 542 KFFHRLS--DHGCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVT 593



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 1/133 (0%)

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  LF  M  +G  PD ++Y  ++   CK   I  A +    M ++G + +  T+   I 
Sbjct: 189 AELLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIIS 248

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            +S      +A+   R++ ++    P   ++T +I  LC+ G + +A + L E+V  G  
Sbjct: 249 RFSGKGYTTRALWYFRRLVDMGLE-PNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWK 307

Query: 391 PREYTYKLVCDAL 403
           P  YT+  + D L
Sbjct: 308 PNVYTHTSLIDGL 320


>gi|255581311|ref|XP_002531466.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528920|gb|EEF30916.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 518

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 155/353 (43%), Gaps = 34/353 (9%)

Query: 54  SIPRFFFQS--PRSIGRQTGFRHRTPLRQRI---LKKEAYNIANNVLVLGPAAYRDPQKV 108
           S+PRF   S  P++  + +     T L  ++   L+    N+  ++  + P    D + V
Sbjct: 5   SLPRFLSLSIAPKT-SKISTLHFTTSLADKLYTHLQNNPNNVEKSLNSIKPKL--DTRCV 61

Query: 109 TLGLNKAT--------EFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSR 160
           T  L+K +         F+ W     ++ H+     +   +F    N + + D  +    
Sbjct: 62  TEVLHKCSLNNSQIGLRFFVWAGYQSNYRHSSFLYSKACKLFNIKQNPQAVLDLFE--FY 119

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R    +V   +   ++ +  E  L NEA     +M++F  + D  AY +VI   C  G+ 
Sbjct: 120 RAEKCVVNLKTFKVVLNLCKEGTLANEAFLVLRKMQEFDIQADTKAYTIVIRLFCDKGDM 179

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
           + A+ L+ +M        PD+ TY  +I  +C  G           R+ EA  L + M  
Sbjct: 180 DMAQKLMGEMSFNDLY--PDMVTYVSIIKGFCDIG-----------RLEEACRLVKEMRA 226

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEI 338
            G VP+VV Y+ L+DG C+   +ERALEL   M K+G  C PN +TY S I+        
Sbjct: 227 HGCVPNVVVYSTLVDGICRFGSVERALELLGGMEKEGGDCNPNVLTYTSVIQGLCEKGRT 286

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
             A  ++ +M+      P   + + ++  LC  G + EA   +  +V GGSV 
Sbjct: 287 MDAFAVLDRMEACGCA-PNRVTVSTLLKRLCMDGHLEEAYKLIDRVVAGGSVS 338



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 18/209 (8%)

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNF-NKARFLLEQMELPGFRCPPDVYTYTIL 247
           L  FYR +  +C  ++  + VV+N LC+ G   N+A  +L +M+   F    D   YTI+
Sbjct: 115 LFEFYRAE--KCVVNLKTFKVVLN-LCKEGTLANEAFLVLRKMQ--EFDIQADTKAYTIV 169

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I  +C  G            +  A  L   M F    PD+V Y  +I G C   R+E A 
Sbjct: 170 IRLFCDKG-----------DMDMAQKLMGEMSFNDLYPDMVTYVSIIKGFCDIGRLEEAC 218

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
            L  +M   GC+PN V Y++ +        +++A+E++  M+       P   +YT +I 
Sbjct: 219 RLVKEMRAHGCVPNVVVYSTLVDGICRFGSVERALELLGGMEKEGGDCNPNVLTYTSVIQ 278

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYT 395
            LCE GR ++A   L  +   G  P   T
Sbjct: 279 GLCEKGRTMDAFAVLDRMEACGCAPNRVT 307



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 121/281 (43%), Gaps = 32/281 (11%)

Query: 157 DMSRRGNGEL---------VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           DM+++  GE+         VT  S+   IK   + G + EA      M+   C P+V  Y
Sbjct: 180 DMAQKLMGEMSFNDLYPDMVTYVSI---IKGFCDIGRLEEACRLVKEMRAHGCVPNVVVY 236

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           + +++ +CR G+  +A  LL  ME  G  C P+V TYT +I   C+ G           R
Sbjct: 237 STLVDGICRFGSVERALELLGGMEKEGGDCNPNVLTYTSVIQGLCEKG-----------R 285

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
             +A  +   M   G  P+ V  + L+   C    +E A +L D +   G + +   Y+ 
Sbjct: 286 TMDAFAVLDRMEACGCAPNRVTVSTLLKRLCMDGHLEEAYKLIDRVVAGGSVSSCDCYSP 345

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            +     + ++++A ++ R+   +  GV P   + + +I  LC   RVL+      E+  
Sbjct: 346 IVVCLIRIKKVEEAEKLFRRA--VVSGVKPDGLACSLMIKELCFVNRVLDGYCLHDEIEK 403

Query: 387 GGSVPR----EYTYKLV--CDALNAAEEPSLLDDGLRKRIR 421
            GS+       Y+  LV  C    + E   L    + KRI 
Sbjct: 404 IGSLSTIDSDTYSVLLVGLCQQGYSLEAAKLARSLIEKRIH 444


>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 16/256 (6%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           +W   KD+ RRG      T S   +I     +G ++   +  + M +F C P+ +AYN+V
Sbjct: 40  VWKLFKDVIRRGPQPCKYTFS--GIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIV 97

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           INA C  G  + A      M   G  C P V T+  +I+++CK G            + E
Sbjct: 98  INACCIRGRTSDALAWFNLMIERG--CNPTVVTFNTVINAFCKEG-----------NVVE 144

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  LF  +   GF P+ + YN L++G  K   I++A  L+++M KKG  P+ +T+N  + 
Sbjct: 145 ARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVS 204

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            +      +    +++ +  L   +P  S +   +  LC AGR+ EA +FL ++++ G  
Sbjct: 205 GHYKYGREEDGDRLLKDISVLGL-LPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLS 263

Query: 391 PREYTYKLVCDALNAA 406
           P    +  V  A + A
Sbjct: 264 PSIIAFNSVIAAYSQA 279



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 119/258 (46%), Gaps = 17/258 (6%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           RG     L  F   + R  N  +VT ++V   I    +EG V EA   F  +K+    P+
Sbjct: 104 RGRTSDALAWFNLMIERGCNPTVVTFNTV---INAFCKEGNVVEARKLFDGLKEMGFSPN 160

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              YN ++N   ++   ++A  L E+M   G    PD  T+ IL+S + KYG        
Sbjct: 161 AIMYNTLMNGYVKMREIDQANMLYEEMRKKGI--APDGITFNILVSGHYKYG-------- 210

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              R  + + L + +   G +PD   ++  + G C   R++ A+E   DM +KG  P+ +
Sbjct: 211 ---REEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSII 267

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
            +NS I  YS     DKA E  + M +     P+ S+ + ++  L   GR+ EA + + +
Sbjct: 268 AFNSVIAAYSQAGLEDKAFEAYKLMVHFGL-TPSPSTCSSLLMGLSINGRLQEATELIGQ 326

Query: 384 LVDGGSVPREYTYKLVCD 401
           +++ G       + ++ D
Sbjct: 327 MIEKGLSVNNMAFTVLLD 344



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 124/276 (44%), Gaps = 17/276 (6%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           +KA E Y  +  F     +  TC  + +  +    ++   + +  M  +G    V   + 
Sbjct: 283 DKAFEAYKLMVHF-GLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLS--VNNMAF 339

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T L+    + G V  A + +  M++    PDV A++  I+ L + G   +A  +  +M  
Sbjct: 340 TVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLR 399

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    P+ + Y  LI  +CK G           ++ EA  L ++M  +G +PD+   N 
Sbjct: 400 KGL--IPNNFAYNSLICGFCKCG-----------KLNEALKLEKVMRHRGLLPDIFTTNM 446

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           +I G CK  R+  A+ +F DM++ G  P+ +TYN+ I  Y    ++  A  ++ +M    
Sbjct: 447 IIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASG 506

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              P  ++Y   IH  C + R+  A   L ELV  G
Sbjct: 507 SN-PDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAG 541



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 22/266 (8%)

Query: 153 DFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           +FL DM  +G +  ++  +SV   I    + GL ++A   +  M  F   P     + ++
Sbjct: 252 EFLMDMLEKGLSPSIIAFNSV---IAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLL 308

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             L   G   +A  L+ QM   G     +   +T+L+  + K G   G           A
Sbjct: 309 MGLSINGRLQEATELIGQMIEKGLSV--NNMAFTVLLDKFFKRGDVVG-----------A 355

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             L+  M  +G  PDVVA++  IDG  K   +E A  +F +M +KG IPN   YNS I  
Sbjct: 356 QSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICG 415

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           +    ++++A+++ + M++    +P   +   II  LC+ GR+  A +   ++   G  P
Sbjct: 416 FCKCGKLNEALKLEKVMRHRGL-LPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSP 474

Query: 392 REYTYKLV----CDALNAAEEPSLLD 413
              TY  +    C A +     +L++
Sbjct: 475 DIITYNTLINGYCKAFDMVNADNLVN 500



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 16/234 (6%)

Query: 167 VTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +T S  TC  L+  L   G + EA     +M +     +  A+ V+++   + G+   A+
Sbjct: 297 LTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQ 356

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            L  +ME  G    PDV  ++  I    K G+           + EA ++F  ML KG +
Sbjct: 357 SLWGEMERRGIF--PDVVAFSAFIDGLSKQGL-----------VEEAYNVFLEMLRKGLI 403

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+  AYN LI G CK  ++  AL+L   M  +G +P+  T N  I        +  AI +
Sbjct: 404 PNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINV 463

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
              M       P   +Y  +I+  C+A  ++ A + +  +   GS P   TY +
Sbjct: 464 FMDMHQTGLS-PDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNI 516



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 29/202 (14%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F RG+ V G      +M RRG        + +  I  L ++GLV EA   F  M +    
Sbjct: 347 FKRGD-VVGAQSLWGEMERRG--IFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLI 403

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG------ 255
           P+ +AYN +I   C+ G  N+A  L + M   G    PD++T  ++I   CK G      
Sbjct: 404 PNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLL--PDIFTTNMIIGGLCKQGRMRSAI 461

Query: 256 ------MQTGCRKAIRR------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
                  QTG    I               +  A++L   M   G  PD+  YN  I G 
Sbjct: 462 NVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGF 521

Query: 298 CKTYRIERALELFDDMNKKGCI 319
           C + R+ RA+ + D++   G +
Sbjct: 522 CSSRRMNRAVLMLDELVSAGIL 543


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 117/275 (42%), Gaps = 62/275 (22%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I+ L +EG V EAL     M +   RPD   YN +I   C +G  ++A  L  ++E+
Sbjct: 342 TIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESL--RLEI 399

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
               C P+ +TY+ILI   CK G+           I +A H+F+ M   G +P VV +N 
Sbjct: 400 SKHDCFPNNHTYSILICGMCKNGL-----------INKAQHIFKEMEKLGCLPSVVTFNS 448

Query: 293 LIDGCCKTYRIERALELFDDMN-------------------------------------- 314
           LI+G CK  R+E A  LF  M                                       
Sbjct: 449 LINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMIL 508

Query: 315 ----------KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
                       G +P+  TYN  I  +     I+ A ++ ++MQ   H +P S +Y  +
Sbjct: 509 KAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGH-MPDSVTYGTL 567

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           I  L  AGR  +A +   ++V  G VP   TYK +
Sbjct: 568 IDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTI 602



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 95/225 (42%), Gaps = 61/225 (27%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + LI  + + GL+N+A   F  M++  C P V  +N +IN LC+     +AR L  QM
Sbjct: 410 TYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQM 469

Query: 231 ELPGFRCP------------------------------------------------PDVY 242
           E+   R P                                                PD+ 
Sbjct: 470 EI--VRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIR 527

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TY ILI+ +CK+G   G  K           LF+ M  KG +PD V Y  LIDG  +  R
Sbjct: 528 TYNILINGFCKFGNINGAFK-----------LFKEMQLKGHMPDSVTYGTLIDGLYRAGR 576

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
            E ALE+F+ M KKGC+P   TY + + +    N I  A+ +  K
Sbjct: 577 NEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMK 621



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 128/300 (42%), Gaps = 57/300 (19%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           W  L+++  + +   +++ + + LI+   E G+  +A+ +F  M+ F C+PD++A+N+++
Sbjct: 113 WKVLQEL--KNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLIL 170

Query: 212 NALCRVGNFNKARFLLEQMELPGFRC--PPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           + L R   F  A  +  QM     +C   PDV TY ILI   CK      C+        
Sbjct: 171 HFLVRKEAFLLALAVYNQM----LKCNLNPDVVTYGILIHGLCK-----TCKTQ------ 215

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           +A  LF  M  +G +P+ + Y+ ++ G C+  +I  A  LF  M   GC  + +TYN  +
Sbjct: 216 DALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLL 275

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNH--GV-------------------------------- 355
             +     +D A  +++ +    H  GV                                
Sbjct: 276 NGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIK 335

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSL 411
           P    YT +I  L + GRV EA   L E+ + G  P    Y    K  CD     E  SL
Sbjct: 336 PDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESL 395



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 118/253 (46%), Gaps = 27/253 (10%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G ++      CLI  L       EA   + +M +   +PDV  Y ++I  L + G   +
Sbjct: 297 DGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTE 356

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK- 281
           A  LL +M   G R  PD   Y  LI  +C  G            + EA  L RL + K 
Sbjct: 357 ALTLLGEMTERGLR--PDTICYNALIKGFCDMGY-----------LDEAESL-RLEISKH 402

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
              P+   Y+ LI G CK   I +A  +F +M K GC+P+ VT+NS I      N +++A
Sbjct: 403 DCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEA 462

Query: 342 ------IEMMRK---MQNLNHG---VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
                 +E++RK      L+ G   V   +S   ++  LCE+G +L+A   L +LVD G 
Sbjct: 463 RLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGV 522

Query: 390 VPREYTYKLVCDA 402
           +P   TY ++ + 
Sbjct: 523 LPDIRTYNILING 535



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 117/254 (46%), Gaps = 30/254 (11%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
            +AL  F  M      P+   Y++V++ LC+      A+ L  +M   G  C  D+ TY 
Sbjct: 215 QDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASG--CNRDLITYN 272

Query: 246 ILISSYCKYG---------------------MQTGC--RKAIRRRIWEANHL-FRLMLFK 281
           +L++ +CK G                     +  GC      R R +E  H+ ++ ML +
Sbjct: 273 VLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRE 332

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
              PDV+ Y  +I G  +  R+  AL L  +M ++G  P+ + YN+ I+ +  +  +D+A
Sbjct: 333 NIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEA 392

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
            E +R   + +   P + +Y+ +I  +C+ G + +A+    E+   G +P   T+  + +
Sbjct: 393 -ESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLIN 451

Query: 402 AL---NAAEEPSLL 412
            L   N  EE  LL
Sbjct: 452 GLCKANRLEEARLL 465


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 120/262 (45%), Gaps = 17/262 (6%)

Query: 141  VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            + ARG  VK ++D   +M     G + T  +   +I  L + GLV  A   F  M+    
Sbjct: 1200 LLARGC-VKKVYDLQLEM--ENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGL 1256

Query: 201  RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
             PDV  YN ++N  C+ GN  +A  L   +   G    P V TY ILI  YC+ G     
Sbjct: 1257 LPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGL--APTVLTYNILIDGYCRLG----- 1309

Query: 261  RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                   + EA  L   M  +G +P+V  Y  L+ G      +  A E FD+M  KG  P
Sbjct: 1310 ------DLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQP 1363

Query: 321  NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
            +   YN+ I    ++ +I +A E +R++  L      + +Y  +IH LC+ G + +A++ 
Sbjct: 1364 DCFAYNTRICAELILGDIARAFE-LREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKEL 1422

Query: 381  LAELVDGGSVPREYTYKLVCDA 402
              ++V  G  P   TY  +  A
Sbjct: 1423 QMKMVSNGLQPDCITYTCLIHA 1444



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 123/268 (45%), Gaps = 29/268 (10%)

Query: 161  RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
            R  G L    +   L+    + G + EAL  F  +++    P V  YN++I+  CR+G+ 
Sbjct: 1252 RAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDL 1311

Query: 221  NKARFLLEQMELPGFRCPPDVYTYTILI----------------SSYCKYGMQTGC---- 260
             +AR L E+M   G  C P+V TYTIL+                      G+Q  C    
Sbjct: 1312 EEARILKEEMGEQG--CLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYN 1369

Query: 261  ----RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                 + I   I  A  L  +++ +G   D V YN LI G CKT  ++ A EL   M   
Sbjct: 1370 TRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSN 1429

Query: 317  GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVL 375
            G  P+ +TY   I  +     + +A ++   M  ++ G+ P++ ++T IIHA C  G + 
Sbjct: 1430 GLQPDCITYTCLIHAHCERGLLREARKIFNNM--ISDGLLPSAVTFTVIIHAYCRRGNLY 1487

Query: 376  EARDFLAELVDGGSVPREYTYKLVCDAL 403
             A  +  ++++ G  P E TY ++  AL
Sbjct: 1488 SAYGWFRKMLEEGVEPNEITYNVLIHAL 1515



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 96/212 (45%), Gaps = 16/212 (7%)

Query: 192  FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
            F  M     +PD +AYN  I A   +G+  +A  L E + L G     D  TY ILI   
Sbjct: 1353 FDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISS--DTVTYNILIHGL 1410

Query: 252  CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
            CK G            + +A  L   M+  G  PD + Y CLI   C+   +  A ++F+
Sbjct: 1411 CKTG-----------NLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFN 1459

Query: 312  DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCE 370
            +M   G +P+ VT+   I  Y     +  A    RKM  L  GV P   +Y  +IHALC 
Sbjct: 1460 NMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKM--LEEGVEPNEITYNVLIHALCR 1517

Query: 371  AGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             GR   A     E+++ G V  +YTY L+ D 
Sbjct: 1518 MGRTQLASHHFHEMLERGLVANKYTYTLLIDG 1549



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 111/243 (45%), Gaps = 15/243 (6%)

Query: 154  FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
             LK+M  RG+G L    +   +I  L  +G + EA      M+  + +   + YN +I  
Sbjct: 1141 LLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSK-KASSFTYNPLITG 1199

Query: 214  LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            L   G   K   L  +ME  G    P V TY  +I       +Q+G  +A + +      
Sbjct: 1200 LLARGCVKKVYDLQLEMENEGIM--PTVVTYNAMIHGL----LQSGLVEAAQVK------ 1247

Query: 274  LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
             F  M   G +PDV+ YN L++G CK   ++ AL LF D+ + G  P  +TYN  I  Y 
Sbjct: 1248 -FAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYC 1306

Query: 334  VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             + ++++A  ++++       +P   +YT ++        +  AR+F  E++  G  P  
Sbjct: 1307 RLGDLEEA-RILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDC 1365

Query: 394  YTY 396
            + Y
Sbjct: 1366 FAY 1368



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 24/248 (9%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            +++VL +    ++  A    M +    P +  YN ++++  + G  +K   LL++ME  G
Sbjct: 1090 VLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRG 1149

Query: 235  FRCPPDVYTYTILISSYCKYG-------MQTGCRKAIRRRIWEANHLFRLMLFKGFV--- 284
              C P+  TY ++I+   + G       +  G R + +   +  N L   +L +G V   
Sbjct: 1150 SGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFTYNPLITGLLARGCVKKV 1209

Query: 285  -------------PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
                         P VV YN +I G  ++  +E A   F +M   G +P+ +TYNS +  
Sbjct: 1210 YDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNG 1269

Query: 332  YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
            Y     + +A+ +   ++      PT  +Y  +I   C  G + EAR    E+ + G +P
Sbjct: 1270 YCKAGNLKEALLLFGDLRRAGLA-PTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLP 1328

Query: 392  REYTYKLV 399
               TY ++
Sbjct: 1329 NVCTYTIL 1336



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 16/204 (7%)

Query: 203  DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
            D   YN++I+ LC+ GN   A+ L  QM++      PD  TYT LI ++C+ G+      
Sbjct: 1399 DTVTYNILIHGLCKTGNLKDAKEL--QMKMVSNGLQPDCITYTCLIHAHCERGL------ 1450

Query: 263  AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                 + EA  +F  M+  G +P  V +  +I   C+   +  A   F  M ++G  PN 
Sbjct: 1451 -----LREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNE 1505

Query: 323  VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFL 381
            +TYN  I     +     A     +M  L  G V    +YT +I   C+ G   +A  F 
Sbjct: 1506 ITYNVLIHALCRMGRTQLASHHFHEM--LERGLVANKYTYTLLIDGNCKVGNWEDAMRFY 1563

Query: 382  AELVDGGSVPREYTYKLVCDALNA 405
             E+   G  P   T+K +    + 
Sbjct: 1564 FEMHQNGIHPDYLTHKALLKGFDG 1587



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 78/175 (44%), Gaps = 13/175 (7%)

Query: 158  MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
            M    NG      + TCLI    E GL+ EA   F  M      P    + V+I+A CR 
Sbjct: 1424 MKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRR 1483

Query: 218  GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
            GN   A     +M   G    P+  TY +LI + C+ G           R   A+H F  
Sbjct: 1484 GNLYSAYGWFRKMLEEGVE--PNEITYNVLIHALCRMG-----------RTQLASHHFHE 1530

Query: 278  MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            ML +G V +   Y  LIDG CK    E A+  + +M++ G  P+ +T+ + ++ +
Sbjct: 1531 MLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLKGF 1585



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 4/128 (3%)

Query: 278  MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVV 335
            ML  G  P +V YN L+D   K  R ++   L  +M  +G  C+PN VTYN  I   +  
Sbjct: 1110 MLELGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRK 1169

Query: 336  NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
             ++++A E++  M+       +S +Y P+I  L   G V +  D   E+ + G +P   T
Sbjct: 1170 GDLEEAAELVEGMRLSKKA--SSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVT 1227

Query: 396  YKLVCDAL 403
            Y  +   L
Sbjct: 1228 YNAMIHGL 1235



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 5/114 (4%)

Query: 275  FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
            FR M   G  PDV   N ++       R +    + ++M + G  P+ VTYN+ +  +  
Sbjct: 1072 FREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLK 1131

Query: 335  VNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
                DK   ++++M+    G +P   +Y  +I  L   G + EA    AELV+G
Sbjct: 1132 EGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEA----AELVEG 1181


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 19/258 (7%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +  +G  V      L ++ +  +G  V   + T +I      G   EA+  F +M++  C
Sbjct: 174 ILGKGGRVSAAASLLHNLCK--DGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGC 231

Query: 201 RPDVYAYNVVINALCRVG-NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           +P +  YNV++N   ++G  +NK   L+++M+  G    PD YTY  LIS          
Sbjct: 232 KPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGI--APDSYTYNTLISC--------- 280

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
           CR+       EA  + + M   GF PD V YN L+D   K+ R + A+E+  +M   GC 
Sbjct: 281 CRRG--NLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCP 338

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEAR 378
           P+ VTYNS I  Y+    ++ A+E+  K Q +  G+ P   +YT ++    +AG+   A 
Sbjct: 339 PSIVTYNSLISAYARDGLLEDALEL--KNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAV 396

Query: 379 DFLAELVDGGSVPREYTY 396
               E+ + G  P   T+
Sbjct: 397 QIFEEMRNEGCKPNICTF 414



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 126/288 (43%), Gaps = 36/288 (12%)

Query: 144 RGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           RGN  +     LK+M   G + + VT ++   L+ V G+     EA+     M+   C P
Sbjct: 283 RGNLYEEAAGVLKEMKLAGFSPDKVTYNA---LLDVYGKSRRSKEAMEVLQEMEGNGCPP 339

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM------ 256
            +  YN +I+A  R G    A  L  QM   G +  PDV+TYT L+S + K G       
Sbjct: 340 SIVTYNSLISAYARDGLLEDALELKNQMVEKGIK--PDVFTYTTLLSGFEKAGKDKAAVQ 397

Query: 257 ------QTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
                   GC+  I            R +  E   +F  +      PD+V +N L+    
Sbjct: 398 IFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFG 457

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PT 357
           +         +F +M + G +P R T+N+ I  YS     D+A+ + ++M  L  GV P 
Sbjct: 458 QNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRM--LEAGVNPD 515

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
            SSY  ++ AL   G   ++   LAE+ DG   P E TY   C  L+A
Sbjct: 516 LSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTY---CSLLHA 560



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 124/282 (43%), Gaps = 33/282 (11%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           VF +      +    K+M R G   +    +   LI      G  ++A+A + RM +   
Sbjct: 455 VFGQNGMDSEVSGVFKEMKRAGF--VPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGV 512

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            PD+ +YN V+ AL R G + ++  +L +M+    RC P+  TY  L+ +Y   G +   
Sbjct: 513 NPDLSSYNAVLAALARGGLWKQSEKVLAEMK--DGRCKPNELTYCSLLHAYAN-GKEIER 569

Query: 261 RKAIRRRIW-------------------------EANHLFRLMLFKGFVPDVVAYNCLID 295
             A+   I+                         E    F  +  +GF PD+   N ++ 
Sbjct: 570 MCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVS 629

Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
              +   + +A E+ D M + G  P+  TYNS +  YS     +++ E++R++  L  G+
Sbjct: 630 IYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREI--LAKGI 687

Query: 356 -PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            P   SY  +I+A C  GR+ +A   L+E+ + G  P   TY
Sbjct: 688 RPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITY 729



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 112/259 (43%), Gaps = 52/259 (20%)

Query: 175 LIKVLGEEGL-VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-FNKARFLLEQMEL 232
           ++ V G+ G+  N+ +    RMK     PD Y YN +I+  CR GN + +A  +L++M+L
Sbjct: 241 ILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISC-CRRGNLYEEAAGVLKEMKL 299

Query: 233 PGFR---------------------------------CPPDVYTYTILISSYCKYGMQTG 259
            GF                                  CPP + TY  LIS+Y + G+   
Sbjct: 300 AGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGL--- 356

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                   + +A  L   M+ KG  PDV  Y  L+ G  K  + + A+++F++M  +GC 
Sbjct: 357 --------LEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCK 408

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN--HGVPTSSSYTPIIHALCEAGRVLEA 377
           PN  T+N+ I+ +       K  EMM+  +++      P   ++  ++    + G   E 
Sbjct: 409 PNICTFNALIKMHG---NRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEV 465

Query: 378 RDFLAELVDGGSVPREYTY 396
                E+   G VP   T+
Sbjct: 466 SGVFKEMKRAGFVPERDTF 484



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 16/202 (7%)

Query: 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243
           L+ E    F  ++Q    PD+   N +++   R     KA  +L+ M+  GF   P + T
Sbjct: 601 LLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGF--TPSLTT 658

Query: 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303
           Y  L+  Y         R A   R   +  + R +L KG  PD+++YN +I   C+  R+
Sbjct: 659 YNSLMYMYS--------RSANFER---SEEILREILAKGIRPDIISYNTVIYAYCRNGRM 707

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYT 362
             A  +  +M + G  P+ +TYN+FI  Y+  +   +AI+++  M  + HG  P  S+Y 
Sbjct: 708 RDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYM--IKHGCKPNQSTYN 765

Query: 363 PIIHALCEAGRVLEARDFLAEL 384
            I+   C+  R  EA  F+  L
Sbjct: 766 SIVDWYCKLNRRDEASMFVNNL 787



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 15/196 (7%)

Query: 157 DMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
           ++ +RG    +TT  +  ++ + G   +V +A      MK+    P +  YN ++    R
Sbjct: 611 ELRQRGFSPDITT--LNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSR 668

Query: 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276
             NF ++  +L ++   G R  PD+ +Y  +I +YC+ G           R+ +A+ +  
Sbjct: 669 SANFERSEEILREILAKGIR--PDIISYNTVIYAYCRNG-----------RMRDASRVLS 715

Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M   G  PD++ YN  I           A+++   M K GC PN+ TYNS + +Y  +N
Sbjct: 716 EMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLN 775

Query: 337 EIDKAIEMMRKMQNLN 352
             D+A   +  ++ L+
Sbjct: 776 RRDEASMFVNNLRKLD 791



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 13/170 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           +   LIK+ G  G   E +  F  +K F+C PD+  +N +++   + G  ++   + ++M
Sbjct: 413 TFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEM 472

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  GF   P+  T+  LISSY + G              +A  +++ ML  G  PD+ +Y
Sbjct: 473 KRAGF--VPERDTFNTLISSYSRCG-----------SFDQAMAVYKRMLEAGVNPDLSSY 519

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           N ++    +    +++ ++  +M    C PN +TY S +  Y+   EI++
Sbjct: 520 NAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIER 569


>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
 gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 647

 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 119/257 (46%), Gaps = 29/257 (11%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T L++ L ++G V++AL  +  M      P   +YN++I  LC VG+   A  +L  M
Sbjct: 300 TFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSM 359

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG------------MQTGCRKAI------------RR 266
           E  G  C P+V TY+ LI  + K G             ++GC+  +            + 
Sbjct: 360 EQHG--CFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKL 417

Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
              +A  L   ML +   P+ V +N LI   C   R+ RAL +F +M + GC+PN  TYN
Sbjct: 418 MFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYN 477

Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELV 385
             I           A+ M+ +MQ  +HG+  S  +Y  ++  LC+     EA  F+ +++
Sbjct: 478 ELIHGLFREGNCGDALHMVTEMQ--SHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMI 535

Query: 386 DGGSVPREYTYKLVCDA 402
             G  P  +T+  +  A
Sbjct: 536 VQGIQPNAFTFSAIIHA 552



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 22/253 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  E +V   +  +  M++    P+V+ YN+++ ALC+      AR +L++M   G
Sbjct: 134 LIDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKG 193

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRR-------------------RIWEANHLF 275
             CPPD  TY  ++S  CK        + +                     R+ E   + 
Sbjct: 194 --CPPDDVTYATIVSVLCKLDRLDEATEVLAAMPPVAASYNAIVLALCREFRMQEVFSVV 251

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
             M+ +G  P+V+ Y  ++D  CK   +  A  +   M   GC PN VT+ + +R     
Sbjct: 252 SDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDD 311

Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
             +  A++M R M       P++ SY  +I  LC  G +  A   L  +   G  P   T
Sbjct: 312 GRVHDALDMWRWMV-AEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRT 370

Query: 396 YKLVCDALNAAEE 408
           Y  + D  + A +
Sbjct: 371 YSTLIDGFSKAGD 383



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 106/263 (40%), Gaps = 47/263 (17%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
            +S   ++  L  E  + E  +    M     +P+V  Y  +++A C+ G    A  +L 
Sbjct: 228 AASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILA 287

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
           +M + G  C P+V T+T L+      G           R+ +A  ++R M+ +G+ P  V
Sbjct: 288 RMVITG--CTPNVVTFTALVRGLFDDG-----------RVHDALDMWRWMVAEGWAPSTV 334

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           +YN LI G C    ++ A  + + M + GC PN  TY++ I  +S   ++  AI +   M
Sbjct: 335 SYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDM 394

Query: 349 QN----------------------------------LNHGVPTSSSYTPIIHALCEAGRV 374
                                               L +  P + ++  +I +LC+  RV
Sbjct: 395 SRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRV 454

Query: 375 LEARDFLAELVDGGSVPREYTYK 397
             A     E+   G VP   TY 
Sbjct: 455 GRALGVFHEMRRHGCVPNGRTYN 477



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 120/279 (43%), Gaps = 31/279 (11%)

Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
            ++KG    L  M + G    V T S   LI    + G +  A++ +  M +  C+P+V 
Sbjct: 347 GDLKGASSILNSMEQHGCFPNVRTYST--LIDGFSKAGDLGGAISIWNDMSRSGCKPNVV 404

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC---KYGMQTGCRK 262
            Y  +++  C+   FN+A+ L+++M L    CPP+  T+  LI S C   + G   G   
Sbjct: 405 VYTNMVDVFCKKLMFNQAKSLIDKMLLE--NCPPNTVTFNTLIRSLCDCRRVGRALGVFH 462

Query: 263 AIRRR---------------------IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            +RR                        +A H+   M   G    +V YN ++ G C+T 
Sbjct: 463 EMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTR 522

Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN-HGVPTSSS 360
               A+     M  +G  PN  T+++ I  Y    E+  A  M+  M  +N H       
Sbjct: 523 MSREAMVFVGKMIVQGIQPNAFTFSAIIHAYCKEGEVRMAAWMLGAMNVVNCH--RNILV 580

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           YT ++  LC   ++++A  +L +++  G  P   T+ ++
Sbjct: 581 YTILMAELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVL 619



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 35/230 (15%)

Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI-----------LISSYCKY 254
           A+   +  L   G+ +  +  L++M L G  C        +            + ++ + 
Sbjct: 57  AHEAAVRRLAAAGDVDGVQLALQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRA 116

Query: 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFV----------------PDVVAYNCLIDGCC 298
               GC +    R++  NHL   +L +  V                P+V  YN L+   C
Sbjct: 117 VHDLGCARPTEPRLY--NHLIDALLRENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALC 174

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           +  R+  A ++ D+M +KGC P+ VTY + +     ++ +D+A E++  M       P +
Sbjct: 175 QNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMP------PVA 228

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           +SY  I+ ALC   R+ E    ++++V  G  P   TY  + DA   A E
Sbjct: 229 ASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGE 278



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 13/156 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L  EG   +AL     M+       +  YN V++ LC+     +A   + +M + G
Sbjct: 479 LIHGLFREGNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSREAMVFVGKMIVQG 538

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P+ +T++ +I +YCK G        +R   W    +  +   +    +++ Y  L+
Sbjct: 539 IQ--PNAFTFSAIIHAYCKEG-------EVRMAAWMLGAMNVVNCHR----NILVYTILM 585

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
              C   ++  A+     M  +G  PN VT+N  +R
Sbjct: 586 AELCNQDKLVDAMTYLLKMLYEGIYPNTVTWNVLVR 621


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 117/276 (42%), Gaps = 60/276 (21%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++A   F RM +  C P+   Y+ +IN LC  G   +A  +LE+M   G    P VYTY
Sbjct: 248 LDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIE--PTVYTY 305

Query: 245 TILISSYCKYGM------------QTGCRKAIRRRIWEANHLFRL------------MLF 280
           T+ ISS C  G             + GC  +++      + LFR             ML 
Sbjct: 306 TVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLK 365

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G VP+ V YN LI+  C   R   AL++FD M   G + N  TYN  I+    +++I+K
Sbjct: 366 EGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEK 425

Query: 341 AIEMMRKM-----------------QNLNHGV-----------------PTSSSYTPIIH 366
           A+ +  KM                 +NL  G                  P   +Y  +I 
Sbjct: 426 AMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELIS 485

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             C+ G++  A  F  E++  G  P ++TY  + D 
Sbjct: 486 GFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDG 521



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 141/313 (45%), Gaps = 37/313 (11%)

Query: 113 NKATEFYHWVERFFDFFHNEMTC-----------------KEMGIVFARG----NNVKGL 151
           + A +F++W+ +   F+ ++M C                   + I+  +     + +K +
Sbjct: 85  DTALQFFYWISKR-HFYKHDMGCFVSMLNRLVKDKILAPADHVRILMIKACRNEDELKRV 143

Query: 152 WDFLKDMSRRGNGEL-VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
            DFL  +S   +G    T  S   L+  LG+  +V  A   + ++     +P +  +N +
Sbjct: 144 TDFLHGISSSDSGLFGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTM 203

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           IN LC+ G   +A  +  +  +  F   PD +TYT LI  +C+            R++ +
Sbjct: 204 INILCKKGKVQEAVLVFNK--IFQFDLCPDAFTYTSLILGHCR-----------NRKLDK 250

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  +F  M+  G  P+ V Y+ LI+G C   RI  A+++ ++M +KG  P   TY   I 
Sbjct: 251 AFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPIS 310

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
               +  +D AI ++R M       P+  +YT II  L  AG++  A     +++  G V
Sbjct: 311 SLCDIGRVDDAINLVRSMGK-KGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLV 369

Query: 391 PREYTYKLVCDAL 403
           P   TY  + + L
Sbjct: 370 PNTVTYNALINEL 382



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 111/250 (44%), Gaps = 16/250 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I +L ++G V EA+  F ++ QF   PD + Y  +I   CR    +KA  + ++M   G
Sbjct: 203 MINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDG 262

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             C P+  TY+ LI+  C  G           RI EA  +   M  KG  P V  Y   I
Sbjct: 263 --CNPNSVTYSTLINGLCNEG-----------RIGEAMDMLEEMTEKGIEPTVYTYTVPI 309

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
              C   R++ A+ L   M KKGC P+  TY + I       +++ AI M  KM  L  G
Sbjct: 310 SSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKM--LKEG 367

Query: 355 -VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
            VP + +Y  +I+ LC  GR   A      +   G++    TY  +   L   ++     
Sbjct: 368 LVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAM 427

Query: 414 DGLRKRIRDG 423
               K ++DG
Sbjct: 428 VVFNKMLKDG 437



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 97/238 (40%), Gaps = 31/238 (13%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G +N A    Y MK+  C PD   Y  +I+  C+ G  + A     +M   G    P+ +
Sbjct: 456 GYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGIS--PNQW 513

Query: 243 TYTILISSYCKYGM------------QTGCRKAIR------------RRIWEANHLFRLM 278
           TYT +I  YCK G             + GC  +I              R  EA      M
Sbjct: 514 TYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKM 573

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
             +G  P+ + Y  LI+G CK      A ++F +M KK C+PN  TY S I       ++
Sbjct: 574 TEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKV 633

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           D A  +       N   PT  +Y+ ++  LC  GR  EA   +  + + G  P    Y
Sbjct: 634 DAAERLTE-----NGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIY 686



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 16/222 (7%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y++N ++  L +      A+ +  Q+   G +  P + T+  +I+  CK G        
Sbjct: 162 LYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVK--PSLLTFNTMINILCKKG-------- 211

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
              ++ EA  +F  +      PD   Y  LI G C+  ++++A E+FD M K GC PN V
Sbjct: 212 ---KVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSV 268

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           TY++ I        I +A++M+ +M     G+ PT  +YT  I +LC+ GRV +A + + 
Sbjct: 269 TYSTLINGLCNEGRIGEAMDMLEEMT--EKGIEPTVYTYTVPISSLCDIGRVDDAINLVR 326

Query: 383 ELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
            +   G  P   TY  +   L  A +  L      K +++G+
Sbjct: 327 SMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGL 368



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 114/286 (39%), Gaps = 51/286 (17%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + ++ M ++G    V T   T +I  L   G +  A+  +++M +    P+   YN +IN
Sbjct: 323 NLVRSMGKKGCSPSVQT--YTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALIN 380

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC  G F  A  + + ME  G     +  TY  +I     +GM           I +A 
Sbjct: 381 ELCTEGRFGIALKIFDWME--GHGTLANAQTYNQIIKGL--FGMD---------DIEKAM 427

Query: 273 HLFRLMLFKGFVPDVVAYNC-----------------------------------LIDGC 297
            +F  ML  G  P VV YN                                    LI G 
Sbjct: 428 VVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGF 487

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
           CK  +++ A   F +M K G  PN+ TY + I  Y    +ID A+ +  +M+  N    +
Sbjct: 488 CKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEE-NGCSAS 546

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +Y  II  L +  R  EA  F A++ + G  P   TY  + + L
Sbjct: 547 IETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGL 592



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 122/285 (42%), Gaps = 29/285 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
            ++GN       F   M+ +G      T + T LI  L +    N A   F+ M++  C 
Sbjct: 557 LSKGNRFSEAEKFCAKMTEQGLQP--NTITYTSLINGLCKNTATNLAFKIFHEMEKKNCL 614

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           P+ + Y  +I  LC+ G  + A  L E        C P + TY+ L+S  C+ G      
Sbjct: 615 PNAHTYTSLIYGLCQEGKVDAAERLTEN------GCEPTIDTYSTLVSGLCREG------ 662

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R  EA+ L   M  KG  P +  Y  L+   CK+ +++ ALE+F+ M  KG  P+
Sbjct: 663 -----RSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPH 717

Query: 322 RVTYNSFIRYYSVVNEIDKAI----EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
              Y   I     V+  ++A+     +++K  N +  V     +T ++  L + G     
Sbjct: 718 LFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIV-----WTVLVDGLLQEGDSDLC 772

Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
             FL  +      P  +TY ++   L+   + S+  D +  R+R+
Sbjct: 773 MKFLYLMESRNCTPSLHTYIILARELSKVGK-SIGTDQIGNRLRE 816


>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
          Length = 822

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 109/242 (45%), Gaps = 18/242 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L++ L  EG V E L          C P V  YNV+I+  CR G+  +   LL +M
Sbjct: 206 STCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEM 265

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           E  GF   P + TY  LI+   K G            + +   LF  M  +G  P+V  Y
Sbjct: 266 EAKGFL--PTLVTYGSLINCLGKKG-----------DLEKIGSLFLEMRKRGLSPNVQIY 312

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM-- 348
           N +ID  CK +   +A+ +   M   GC P+ +T+N+ I        + KA   +R+   
Sbjct: 313 NSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIR 372

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           + LN   P   SYTP+IH  C  G ++ A D L E++  G  P   T+  +   L  A +
Sbjct: 373 RELN---PNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGK 429

Query: 409 PS 410
            S
Sbjct: 430 VS 431



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 112/251 (44%), Gaps = 16/251 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           D L +M  RG+   V T     LI  L   G V+EAL    +M + +  PDV  YNV+I+
Sbjct: 400 DLLMEMMGRGHTPDVVTFGA--LIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLIS 457

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
            LC+      A+ +LE+M     +  PD + Y  LI  + +              + +A 
Sbjct: 458 GLCKKHMLPAAKNILEEMLEKNVQ--PDEFVYATLIDGFIR-----------SENLGDAR 504

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            +F  M  KG  PD+V+ N +I G C+   +  A+    +M K GCIP+  TY + I  Y
Sbjct: 505 KIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGY 564

Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
           +    ++ A+  +  M       P   +Y+ +I+  C+ G    A    A +      P 
Sbjct: 565 AKQGNLNGALRWLCDMIK-RKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPN 623

Query: 393 EYTYKLVCDAL 403
             TY ++  +L
Sbjct: 624 VVTYTILIGSL 634



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 120/272 (44%), Gaps = 35/272 (12%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEALATFYRMKQFR 199
           F R  N+       + M  +G    V    V+C  +IK   + G+++EA+     M++  
Sbjct: 494 FIRSENLGDARKIFEFMEHKG----VRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVG 549

Query: 200 CRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
           C PD + Y  VI+   + GN N A R+L + ++    +C P+V TY+ LI+ YCK G   
Sbjct: 550 CIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKR---KCKPNVVTYSSLINGYCKTGDTD 606

Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                       A  LF  M  +   P+VV Y  LI    K  ++ RA   F+ M    C
Sbjct: 607 -----------SAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHC 655

Query: 319 IPNRVTYNSFIRYYS-----VVNEI---------DKAIEMMRKMQNLNHGVPTSSSYTPI 364
            PN VT +  +   +     V+N I           A+ ++ K    + G P +S+Y  I
Sbjct: 656 SPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAI 715

Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           I +LC    + EA DF   +   G VP   T+
Sbjct: 716 IFSLCRHNMLREALDFKNRMAKKGYVPNPITF 747



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 111/270 (41%), Gaps = 17/270 (6%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK-QFRCRPDVYAYNVVI 211
           D L+ MS  G     T + +  L+    + G++ +A     R++ Q+   P+V   N ++
Sbjct: 119 DTLQSMSLAGAAP--TRACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLL 176

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
             L     ++ AR L ++M   G     D Y+  +L+   C  G           R+ E 
Sbjct: 177 KLLVEQRRWDDARKLYDEML--GEDSGADNYSTCVLVRGLCLEG-----------RVEEG 223

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             L       G +P VV YN LIDG C+   + R L L  +M  KG +P  VTY S I  
Sbjct: 224 LKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINC 283

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
                +++K   +  +M+      P    Y  +I ALC+     +A   L ++   G  P
Sbjct: 284 LGKKGDLEKIGSLFLEMRKRGLS-PNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDP 342

Query: 392 REYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
              T+  +   L         +  LR+ IR
Sbjct: 343 DIITFNTLITGLCHEGHVRKAEHFLREAIR 372



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 43/205 (20%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I    ++G +N AL     M + +C+P+V  Y+ +IN  C+ G+ + A  L   M+ 
Sbjct: 558 TTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGLFANMQA 617

Query: 233 PGFRCPPDVYTYTILISS------------------------------YCKYGMQTGCRK 262
                 P+V TYTILI S                              Y   G+ T C  
Sbjct: 618 EALS--PNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGL-TSCTP 674

Query: 263 AIRRRIWEANHLFR-----LMLFKGFVPDV-----VAYNCLIDGCCKTYRIERALELFDD 312
            +   I             L++FK  V D+      AYN +I   C+   +  AL+  + 
Sbjct: 675 CVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALDFKNR 734

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNE 337
           M KKG +PN +T+ S +  +  V +
Sbjct: 735 MAKKGYVPNPITFLSLLYGFCSVGK 759


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 123/246 (50%), Gaps = 22/246 (8%)

Query: 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
           EG +  A   +  M    C PDV+ Y+++++ LC++G F  A  +L++ME  G  C P++
Sbjct: 326 EGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKG--CAPNI 383

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIW-EANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
            TY+ L+ S+C+ GM            W +A  +   ML KGF  +   YN +I   CK 
Sbjct: 384 VTYSTLLHSFCRNGM------------WDDARAMLDQMLAKGFSMNSQGYNGIIYALCKD 431

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS- 359
            ++++A  L  +M  +GC P+  TYN+ I +    + +++A  + R +  +  GV  +  
Sbjct: 432 GKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNL--IEEGVVANGI 489

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDG 415
           +Y  +IHAL   GR  E     +E++  G      +Y    K +C   N     +LL++ 
Sbjct: 490 TYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEM 549

Query: 416 LRKRIR 421
           + K I+
Sbjct: 550 VTKGIK 555



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 136/305 (44%), Gaps = 44/305 (14%)

Query: 154 FLKDMSRRG---NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
            L+ M+R G   +  L  T     +I  L  +G V EA      M    C  DV  +N +
Sbjct: 199 LLRGMARHGCVPDAVLYQT-----VIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDL 253

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK----------------- 253
           +  LC +G   +A  L+++M   G  C P V TY  L+   C+                 
Sbjct: 254 VLGLCGLGRVREAARLVDRMMTQG--CMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEV 311

Query: 254 --YGMQTGCRKAIRR-RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
               + T  R  +   ++  A  L+ +M  KG  PDV  Y+ L+ G CK  R   A+ + 
Sbjct: 312 NVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRML 371

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALC 369
           D+M +KGC PN VTY++ +  +      D A  M+ +M  L  G   +S  Y  II+ALC
Sbjct: 372 DEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQM--LAKGFSMNSQGYNGIIYALC 429

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVC------DALNAAEE--PSLLDDGLRKRIR 421
           + G++ +A   + E+   G  P   TY  +       D +  AE    +L+++G+   + 
Sbjct: 430 KDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGV---VA 486

Query: 422 DGIEY 426
           +GI Y
Sbjct: 487 NGITY 491



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 13/173 (7%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L   G   E L     M    C+ DV +YN +I ALC+ GN +++  LLE+M   G
Sbjct: 494 LIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKG 553

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  P+ ++Y +LI+  CK G           ++ +A  L + ML +G  PD+V YN LI
Sbjct: 554 IK--PNNFSYNMLINELCKAG-----------KVRDALELSKEMLNQGLTPDIVTYNTLI 600

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           +G CK      AL L + +  +   P+ VTYN  I ++  V  +D A  ++ K
Sbjct: 601 NGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDK 653



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 129/299 (43%), Gaps = 37/299 (12%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L +M  +G    + T S   L+      G+ ++A A   +M       +   YN +I A
Sbjct: 370 MLDEMEEKGCAPNIVTYST--LLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYA 427

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI----- 268
           LC+ G  ++A  L+++M+  G  C PD+ TY  +I   C   +        R  I     
Sbjct: 428 LCKDGKLDQATRLVQEMKSQG--CKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVV 485

Query: 269 ------------------W-EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
                             W E   L   ML  G   DV++YN LI   CK   ++R++ L
Sbjct: 486 ANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMAL 545

Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHAL 368
            ++M  KG  PN  +YN  I       ++  A+E+ ++M  LN G+ P   +Y  +I+ L
Sbjct: 546 LEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEM--LNQGLTPDIVTYNTLINGL 603

Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG---LRKRIRDGI 424
           C+ G    A + L +L +    P   TY ++   ++   +  LLDD    L K I  GI
Sbjct: 604 CKVGWTHAALNLLEKLPNENVHPDIVTYNIL---ISWHCKVRLLDDAAMLLDKAISGGI 659



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 53/289 (18%)

Query: 149 KGLWDFLKDMSRR--GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV-- 204
            G+WD  + M  +    G  + +     +I  L ++G +++A      MK   C+PD+  
Sbjct: 396 NGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICT 455

Query: 205 ---------------------------------YAYNVVINALCRVGNFNKARFLLEQME 231
                                              YN +I+AL R G + +   L  +M 
Sbjct: 456 YNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEML 515

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
           L G  C  DV +Y  LI + CK G            +  +  L   M+ KG  P+  +YN
Sbjct: 516 LHG--CQLDVISYNGLIKALCKEG-----------NVDRSMALLEEMVTKGIKPNNFSYN 562

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
            LI+  CK  ++  ALEL  +M  +G  P+ VTYN+ I     V     A+ ++ K+ N 
Sbjct: 563 MLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNE 622

Query: 352 N-HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           N H  P   +Y  +I   C+   + +A   L + + GG VP E T+ ++
Sbjct: 623 NVH--PDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMM 669



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 95/241 (39%), Gaps = 43/241 (17%)

Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           +AL  + RM + R  P  + + V   ALCR+G    A  LL  M   G  C PD   Y  
Sbjct: 160 DALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALLRGMARHG--CVPDAVLYQT 217

Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           +I +    G            + EA  L   ML  G   DV  +N L+ G C   R+  A
Sbjct: 218 VIHALVAQG-----------GVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREA 266

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN-------------- 352
             L D M  +GC+P+ VTY   ++      + D+A  M+ ++  +N              
Sbjct: 267 ARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTE 326

Query: 353 ---------------HGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
                           G P    +Y+ ++H LC+ GR   A   L E+ + G  P   TY
Sbjct: 327 GKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTY 386

Query: 397 K 397
            
Sbjct: 387 S 387



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 13/158 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LIK L +EG V+ ++A    M     +P+ ++YN++IN LC+ G    A  L ++M   G
Sbjct: 529 LIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQG 588

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD+ TY  LI+  CK G        + +   E  H           PD+V YN LI
Sbjct: 589 L--TPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVH-----------PDIVTYNILI 635

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
              CK   ++ A  L D     G +PN  T+   ++ +
Sbjct: 636 SWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQNF 673


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 99/203 (48%), Gaps = 12/203 (5%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           RM +  C PDV++Y+ ++  LC      +A  L+  M   G  CPPDV +Y+ +I  + K
Sbjct: 74  RMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFK 133

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G            + +A  LF  ML  G  P+VV  N +IDG CK   +++A  +   M
Sbjct: 134 EG-----------DVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQM 182

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
             +  +PN  TYNS I  Y    +  +A+ ++++M   +   P   +Y  +I  LC++G 
Sbjct: 183 IDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSR-DGQRPNVVTYNMLIDCLCKSGF 241

Query: 374 VLEARDFLAELVDGGSVPREYTY 396
             EAR+    ++  G  P   TY
Sbjct: 242 HAEAREIFNSMIQSGPKPDATTY 264



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 129/277 (46%), Gaps = 26/277 (9%)

Query: 149 KGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
            G W      LK+MSR G    V T ++  LI  L + G   EA   F  M Q   +PD 
Sbjct: 204 SGQWTEAVRILKEMSRDGQRPNVVTYNM--LIDCLCKSGFHAEAREIFNSMIQSGPKPDA 261

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
             Y  +++     GN  +   + + M   G R   + +T++I I +YCK G         
Sbjct: 262 TTYGSLLHGYATEGNLVEMNNVKDLMVQNGMR--SNHHTFSIEIYAYCKCG--------- 310

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             R+ EA+  F  M   GF+PD+V Y  +IDG CK  R++ A+  F  M   G  PN +T
Sbjct: 311 --RLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIIT 368

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAE 383
           + + I  +S+  + +KA E+  +M  ++ G+P   + +T +I  L + G+V EA+     
Sbjct: 369 FTTLIHGFSMYGKWEKAEELFYEM--MDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDL 426

Query: 384 LVDGGSVPREYTYKLVCD----ALNAAEEPSLLDDGL 416
           +   G+ P   +Y  +      A    E   LLDD L
Sbjct: 427 MPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDML 463



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 127/299 (42%), Gaps = 35/299 (11%)

Query: 141 VFARGNNVKGLW---------DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           VF+    +KGL          + +  M+  G+       S + +I    +EG V +A   
Sbjct: 84  VFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTL 143

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           F +M      P+V   N VI+ LC+V   +KA  +L+QM        P+  TY  LI  Y
Sbjct: 144 FCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIM--PNCTTYNSLIHGY 201

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
              G  T           EA  + + M   G  P+VV YN LID  CK+     A E+F+
Sbjct: 202 LSSGQWT-----------EAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFN 250

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM--MRKMQNLNHGVPTSSSYTPIIHALC 369
            M + G  P+  TY S +  Y+    +   +EM  ++ +   N       +++  I+A C
Sbjct: 251 SMIQSGPKPDATTYGSLLHGYATEGNL---VEMNNVKDLMVQNGMRSNHHTFSIEIYAYC 307

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL--------NAAEEPSLLDDGLRKRI 420
           + GR+ EA     ++   G +P   TY  V D L          +    ++DDGL   I
Sbjct: 308 KCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNI 366



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 97/241 (40%), Gaps = 48/241 (19%)

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQM---------------------------- 230
           +  PD+  + ++I+  C  G  N     L Q+                            
Sbjct: 8   KVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSDA 67

Query: 231 ------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-- 282
                  +P   C PDV++Y+ L+   C             ++  EA  L  +M   G  
Sbjct: 68  MNIVLRRMPELGCTPDVFSYSTLLKGLCA-----------EKKCEEAAELIHMMAEDGDN 116

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
             PDVV+Y+ +I G  K   + +A  LF  M   G  PN VT NS I     V  +DKA 
Sbjct: 117 CPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAE 176

Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            ++++M +  H +P  ++Y  +IH    +G+  EA   L E+   G  P   TY ++ D 
Sbjct: 177 AVLQQMID-EHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDC 235

Query: 403 L 403
           L
Sbjct: 236 L 236



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 94/227 (41%), Gaps = 43/227 (18%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++EA  TF +M+Q    PD+  Y  VI+ LC++G  + A     QM   G    P++ 
Sbjct: 310 GRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLS--PNII 367

Query: 243 TYTILISSYCKYG------------MQTGCRKAI------------RRRIWEANHLFRLM 278
           T+T LI  +  YG            M  G    +              ++ EA  LF LM
Sbjct: 368 TFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLM 427

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
              G  P+VV+YN +I G      +   ++L DDM   G  P  VT+N+          +
Sbjct: 428 PRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTL---------L 478

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
           D  + M  K        P   +   +I + CE GR+ +      E++
Sbjct: 479 DGMVSMGLK--------PDVDTCKTLIDSCCEDGRIEDILTLFREML 517



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 74/187 (39%), Gaps = 35/187 (18%)

Query: 144 RGNNVKGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199
            G ++ G W+       +M  RG    VT    T +I  L +EG V EA   F  M +  
Sbjct: 374 HGFSMYGKWEKAEELFYEMMDRGIPPDVTI--FTAMIDRLFKEGKVTEAQKLFDLMPRAG 431

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
            +P+V +YN +I+     G   +   LL+ M L G +  P   T+               
Sbjct: 432 AKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLK--PTAVTF--------------- 474

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                       N L   M+  G  PDV     LID CC+  RIE  L LF +M  K   
Sbjct: 475 ------------NTLLDGMVSMGLKPDVDTCKTLIDSCCEDGRIEDILTLFREMLGKADK 522

Query: 320 PNRVTYN 326
            + +T N
Sbjct: 523 TDTITEN 529


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 127/300 (42%), Gaps = 49/300 (16%)

Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
           T   + +   +  ++  +   LK+M   G    V T   T  I+VLG  G +NEA     
Sbjct: 225 TYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYT--FTICIRVLGRAGKINEAYEILK 282

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM----------------------- 230
           RM    C PDV  Y V+I+ALC     + A+ + E+M                       
Sbjct: 283 RMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNR 342

Query: 231 ----------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
                     E+      PDV T+TIL+ + CK G              EA     +M  
Sbjct: 343 DLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAG-----------NFGEAFDTLDVMRD 391

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +G +P++  YN LI G  + +R++ ALELF +M   G  P   TY  FI YY    +   
Sbjct: 392 QGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVS 451

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A+E   KM+    G+ P   +    +++L +AGR  EA+     L D G VP   TY ++
Sbjct: 452 ALETFEKMK--TKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMM 509



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 123/255 (48%), Gaps = 19/255 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G ++   S   LI +L +     EA+  + RM     RP +  Y+ ++  L +  + +  
Sbjct: 183 GFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSV 242

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             LL++ME  G +  P+VYT+TI I    + G           +I EA  + + M  +G 
Sbjct: 243 MGLLKEMETLGLK--PNVYTFTICIRVLGRAG-----------KINEAYEILKRMDDEGC 289

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
            PDVV Y  LID  C   +++ A E+F+ M      P+RVTY + +  +S   ++D   +
Sbjct: 290 GPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQ 349

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK-LVCDA 402
              +M+   H VP   ++T ++ ALC+AG   EA D L  + D G +P  +TY  L+C  
Sbjct: 350 FWSEMEKDGH-VPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGL 408

Query: 403 LNAAEEPSLLDDGLR 417
           L        LDD L 
Sbjct: 409 LRVHR----LDDALE 419



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 116/242 (47%), Gaps = 21/242 (8%)

Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV--LGEEGLVNEALATFYRMKQFRCRP 202
           G++V  L  F K M  +G    +  + V C   +  L + G   EA   FY +K     P
Sbjct: 447 GDSVSALETFEK-MKTKG----IAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVP 501

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           D   YN+++    +VG  ++A  LL +M   G  C PDV     LI++  K         
Sbjct: 502 DSVTYNMMMKCYSKVGEIDEAIKLLSEMMENG--CEPDVIVVNSLINTLYK--------- 550

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
               R+ EA  +F  M      P VV YN L+ G  K  +I+ A+ELF+ M +KGC PN 
Sbjct: 551 --ADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNT 608

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
           +T+N+        +E+  A++M+ KM ++   VP   +Y  II  L + G+V EA  F  
Sbjct: 609 ITFNTLFDCLCKNDEVTLALKMLFKMMDMGC-VPDVFTYNTIIFGLVKNGQVKEAMCFFH 667

Query: 383 EL 384
           ++
Sbjct: 668 QM 669



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 106/234 (45%), Gaps = 17/234 (7%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            LI  L E  ++  A   F ++K   C PDV  YN +++A  + G  ++   L ++M    
Sbjct: 791  LIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMST-- 848

Query: 235  FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL-FRLMLFKGFVPDVVAYNCL 293
              C  +  T+ I+IS   K G            + +A  L + LM  + F P    Y  L
Sbjct: 849  HECEANTITHNIVISGLVKAG-----------NVDDALDLYYDLMSDRDFSPTACTYGPL 897

Query: 294  IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
            IDG  K+ R+  A +LF+ M   GC PN   YN  I  +    E D A  + ++M  +  
Sbjct: 898  IDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRM--VKE 955

Query: 354  GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            GV P   +Y+ ++  LC  GRV E   +  EL + G  P    Y L+ + L  +
Sbjct: 956  GVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKS 1009



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 49/210 (23%)

Query: 175  LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
            LI  L + G + EA   F  M  + CRP+   YN++IN   + G  + A  L ++M   G
Sbjct: 897  LIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG 956

Query: 235  FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
             R  PD+ TY++L+   C  G           R+ E  H F+ +   G  PDVV YN +I
Sbjct: 957  VR--PDLKTYSVLVDCLCMVG-----------RVDEGLHYFKELKESGLNPDVVCYNLII 1003

Query: 295  DGCCKTYRIERALELFDDM------------------------------------NKKGC 318
            +G  K++R+E AL LF++M                                     + G 
Sbjct: 1004 NGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGL 1063

Query: 319  IPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
             PN  T+N+ IR YS+  + + A  + + M
Sbjct: 1064 EPNVFTFNALIRGYSLSGKPEHAYAVYQTM 1093



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 12/247 (4%)

Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
           +L E G+ N    +   +    CR        +I   C+  N + AR L E+        
Sbjct: 723 ILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFT-KDLGV 781

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
            P + TY +LI    +  M           I  A  +F  +   G +PDV  YN L+D  
Sbjct: 782 QPKLPTYNLLIGGLLEADM-----------IEIAQDVFLQVKSTGCIPDVATYNFLLDAY 830

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
            K+ +I+   EL+ +M+   C  N +T+N  I        +D A+++   + +     PT
Sbjct: 831 GKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPT 890

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
           + +Y P+I  L ++GR+ EA+     ++D G  P    Y ++ +    A E        +
Sbjct: 891 ACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFK 950

Query: 418 KRIRDGI 424
           + +++G+
Sbjct: 951 RMVKEGV 957



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 118/269 (43%), Gaps = 16/269 (5%)

Query: 142  FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR-C 200
            + +   +  L++  K+MS         T ++  +I  L + G V++AL  +Y +   R  
Sbjct: 830  YGKSGKIDELFELYKEMSTHECEANTITHNI--VISGLVKAGNVDDALDLYYDLMSDRDF 887

Query: 201  RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
             P    Y  +I+ L + G   +A+ L E M    + C P+   Y ILI+ + K G     
Sbjct: 888  SPTACTYGPLIDGLSKSGRLYEAKQLFEGM--LDYGCRPNCAIYNILINGFGKAGEADA- 944

Query: 261  RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                      A  LF+ M+ +G  PD+  Y+ L+D  C   R++  L  F ++ + G  P
Sbjct: 945  ----------ACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNP 994

Query: 321  NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
            + V YN  I      + +++A+ +  +M+      P   +Y  +I  L  AG V EA   
Sbjct: 995  DVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKI 1054

Query: 381  LAELVDGGSVPREYTYKLVCDALNAAEEP 409
              E+   G  P  +T+  +    + + +P
Sbjct: 1055 YNEIQRAGLEPNVFTFNALIRGYSLSGKP 1083



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 103/239 (43%), Gaps = 18/239 (7%)

Query: 161  RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
            +  G +   ++   L+   G+ G ++E    +  M    C  +   +N+VI+ L + GN 
Sbjct: 812  KSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNV 871

Query: 221  NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            + A  L   + +      P   TY  LI    K G           R++EA  LF  ML 
Sbjct: 872  DDALDLYYDL-MSDRDFSPTACTYGPLIDGLSKSG-----------RLYEAKQLFEGMLD 919

Query: 281  KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
             G  P+   YN LI+G  K    + A  LF  M K+G  P+  TY+  +    +V  +D+
Sbjct: 920  YGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDE 979

Query: 341  AIEMMRKMQ--NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL-VDGGSVPREYTY 396
             +   ++++   LN   P    Y  II+ L ++ R+ EA     E+    G  P  YTY
Sbjct: 980  GLHYFKELKESGLN---PDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTY 1035



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 77/187 (41%), Gaps = 14/187 (7%)

Query: 142  FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
            F +           K M + G    + T SV  L+  L   G V+E L  F  +K+    
Sbjct: 936  FGKAGEADAACALFKRMVKEGVRPDLKTYSV--LVDCLCMVGRVDEGLHYFKELKESGLN 993

Query: 202  PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            PDV  YN++IN L +     +A  L  +M+       PD+YTY  LI +    GM     
Sbjct: 994  PDVVCYNLIINGLGKSHRLEEALVLFNEMK-TSRGITPDLYTYNSLILNLGIAGM----- 1047

Query: 262  KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                  + EA  ++  +   G  P+V  +N LI G   + + E A  ++  M   G  PN
Sbjct: 1048 ------VEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1101

Query: 322  RVTYNSF 328
              TY   
Sbjct: 1102 TGTYEQL 1108



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 1/144 (0%)

Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
           +++  + +A +  R M   GFV +  +YN LI    K+     A+E++  M  +G  P+ 
Sbjct: 164 SVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSL 223

Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
            TY+S +       +ID  + ++++M+ L    P   ++T  I  L  AG++ EA + L 
Sbjct: 224 QTYSSLMVGLGKRRDIDSVMGLLKEMETLGLK-PNVYTFTICIRVLGRAGKINEAYEILK 282

Query: 383 ELVDGGSVPREYTYKLVCDALNAA 406
            + D G  P   TY ++ DAL  A
Sbjct: 283 RMDDEGCGPDVVTYTVLIDALCTA 306


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 111/231 (48%), Gaps = 16/231 (6%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M +RG    V T   T L   L ++G V  A    + M       +   YN +IN LC+ 
Sbjct: 457 MVQRGVTPNVVT--YTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKA 514

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           G   +A   +  M+    +  PDVYTYT LI + CK G            +  A+ L + 
Sbjct: 515 GYLEQAMRTMADMDTACLK--PDVYTYTTLIDALCKSG-----------DLDRAHSLLQE 561

Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
           ML KG  P +V YN L++G C + R+E   +L D M +K   PN  TYNS ++ Y + N 
Sbjct: 562 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENN 621

Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
           +    E+ + M++ + G P  ++Y  +I   C+A  + EA  F  E++  G
Sbjct: 622 MKSTTEIYKGMRSRDVG-PNENTYNILIKGHCKARNMKEALYFHDEMIQKG 671



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 101/210 (48%), Gaps = 18/210 (8%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           F  M++     D   Y  +IN LCR     +A  LL++M     R   D  TYT+LI  Y
Sbjct: 384 FDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMW--ARRLDVDEVTYTVLIDGY 441

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK G           ++ EA  +   M+ +G  P+VV Y  L DG CK   ++ A EL  
Sbjct: 442 CKRG-----------KMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLH 490

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV--PTSSSYTPIIHALC 369
           +M+ KG   N  TYNS I        +++A   MR M +++     P   +YT +I ALC
Sbjct: 491 EMSNKGLELNACTYNSLINGLCKAGYLEQA---MRTMADMDTACLKPDVYTYTTLIDALC 547

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           ++G +  A   L E++D G  P   TY ++
Sbjct: 548 KSGDLDRAHSLLQEMLDKGIKPTIVTYNVL 577



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 24/262 (9%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  +V+   + L +MS +G    +   +   LI  L + G + +A+ T   M     +PD
Sbjct: 478 KQGDVQAANELLHEMSNKGLE--LNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPD 535

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           VY Y  +I+ALC+ G+ ++A  LL++M   G +  P + TY +L++ +C  G   G +K 
Sbjct: 536 VYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIK--PTIVTYNVLMNGFCMSGRVEGGKK- 592

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
                     L   ML K   P+   YN L+   C    ++   E++  M  +   PN  
Sbjct: 593 ----------LLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNEN 642

Query: 324 TYNSFIRYYSVVNEIDKAI----EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           TYN  I+ +     + +A+    EM++K   L     T++SY+ +I  L +  + +EAR+
Sbjct: 643 TYNILIKGHCKARNMKEALYFHDEMIQKGFRL-----TATSYSALIRLLNKKKKFVEARE 697

Query: 380 FLAELVDGGSVPREYTYKLVCD 401
              ++   G       Y    D
Sbjct: 698 LFHDMRKEGLTAESDVYDFYID 719



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 121/256 (47%), Gaps = 18/256 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T ++ +L ++G +++AL     M Q +   D   Y  V++  C  G+   AR   ++M+ 
Sbjct: 330 TSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQR 389

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G     D  TYT +I+  C+         A+   + EA  L + M  +    D V Y  
Sbjct: 390 KGL--ATDGVTYTTMINGLCR---------AVE--LEEAEKLLQEMWARRLDVDEVTYTV 436

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LIDG CK  ++  A ++ + M ++G  PN VTY +         ++  A E++ +M N  
Sbjct: 437 LIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKG 496

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE---- 408
             +  + +Y  +I+ LC+AG + +A   +A++      P  YTY  + DAL  + +    
Sbjct: 497 LEL-NACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRA 555

Query: 409 PSLLDDGLRKRIRDGI 424
            SLL + L K I+  I
Sbjct: 556 HSLLQEMLDKGIKPTI 571



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 17/255 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S   L+K L + G V +A   F  M      PDV  Y ++I+  C +G    A  LL++M
Sbjct: 261 SYNILLKALCDAGRVKDARQLFDEMAS---APDVVTYGILIHGHCALGELENAVKLLDEM 317

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G    P+   YT +++  C  G            I +A  +   M+ +  + D   Y
Sbjct: 318 VAGGVE--PNATVYTSVVALLCDKGW-----------ISDALRVVEDMVQRKVILDEALY 364

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             ++ G C    +  A   FD+M +KG   + VTY + I       E+++A +++++M  
Sbjct: 365 TTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWA 424

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
               V    +YT +I   C+ G++ EA      +V  G  P   TY  + D L    +  
Sbjct: 425 RRLDV-DEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQ 483

Query: 411 LLDDGLRKRIRDGIE 425
             ++ L +    G+E
Sbjct: 484 AANELLHEMSNKGLE 498



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 29/231 (12%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           R++Q+   P   A N V++ L      ++A  L +  ELP      +V +Y IL+ + C 
Sbjct: 222 RLRQYGISPSPEACNAVLSRL----PLDEAIELFQ--ELPH----KNVCSYNILLKALCD 271

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
            G           R+ +A  LF  M      PDVV Y  LI G C    +E A++L D+M
Sbjct: 272 AG-----------RVKDARQLFDEM---ASAPDVVTYGILIHGHCALGELENAVKLLDEM 317

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
              G  PN   Y S +        I  A+ ++  M      +   + YT ++   C  G 
Sbjct: 318 VAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQ-RKVILDEALYTTVLSGFCNKGD 376

Query: 374 VLEARDFLAELVDGGSVPREYTYKL----VCDALNAAEEPSLLDDGLRKRI 420
           ++ AR +  E+   G      TY      +C A+   E   LL +   +R+
Sbjct: 377 LVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRL 427


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 14/199 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--IPNGVTFTTLIXGHCKNG----- 261

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +  +PD++ YN LI G CK   +++A  L D+M+ KG  P
Sbjct: 262 ------RVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKP 315

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           ++ TY + I       ++D A +  ++M   N  +    +YT +I  LC+ GR ++A   
Sbjct: 316 DKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLD-DVAYTALISGLCQEGRSVDAEKM 374

Query: 381 LAELVDGGSVPREYTYKLV 399
           L E++  G  P   TY ++
Sbjct: 375 LREMLSVGLKPDIGTYTMI 393



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 142 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 191

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG IP
Sbjct: 192 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIP 245

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ + M  Q+L   +P   +Y  +I+ LC+ G + +A 
Sbjct: 246 NGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSL---LPDLITYNTLIYGLCKKGDLKQAH 302

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
             + E+   G  P ++TY  + D 
Sbjct: 303 XLIDEMSMKGLKPDKFTYTTLIDG 326



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 97/198 (48%), Gaps = 16/198 (8%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  +  M      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 249 TFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEM 308

Query: 231 ELPGFRCPPDVYTYTILISSYCKYG-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
            + G +  PD +TYT LI   CK G + T  +   R+R+ + N   RL        D VA
Sbjct: 309 SMKGLK--PDKFTYTTLIDGCCKEGDLDTAFKH--RKRMIQGN--IRL--------DDVA 354

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y  LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ
Sbjct: 355 YTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQ 414

Query: 350 NLNHGVPTSSSYTPIIHA 367
              H VP+  +Y  +++ 
Sbjct: 415 RNGH-VPSVVTYNVLMNG 431



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 105/237 (44%), Gaps = 30/237 (12%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   +   A +++   + R G  + +      +E  G +   D+Y +
Sbjct: 17  HTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFATILETKGTQ-RSDIYVF 75

Query: 245 TILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK---GFVPDVVA 289
           + LI++Y + G       C +  R  ++W           HL +L  FK   GF  +++ 
Sbjct: 76  SGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILE 135

Query: 290 ---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
                    +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  + ++D+
Sbjct: 136 CGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDE 195

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
              +   M  L  GV P   +Y+ +I+ LC+  ++ +A +   E++  G +P   T+
Sbjct: 196 GFRLKSAM--LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTF 250


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 16/230 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L + G V+ A      M +    PD+    ++++ LC+    ++A  L  Q+   G
Sbjct: 366 LIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESG 425

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PDV++YTILI   C             RR+ EA +L R M  K  VP +V Y+CLI
Sbjct: 426 L--TPDVWSYTILIHGCCT-----------SRRMGEAMNLLRDMHLKNLVPHIVTYSCLI 472

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           DG C++ RI  A  L ++M+ KG +P+ +TY+  +        +D+A+ +  +M  +  G
Sbjct: 473 DGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQM--IKRG 530

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           + P    YT +I   C++ R+ EA +   E+     VP   TY ++ +A+
Sbjct: 531 LEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNAV 580



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 117/268 (43%), Gaps = 31/268 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I  L   G V+E    +  M      P+ + Y  +I  LC VG F +   L+++M   G
Sbjct: 191 VIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRG 250

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRK------------------------AIRRRIWE 270
                 VY +T+LI   CK GM    R+                         ++  +  
Sbjct: 251 L--DVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDM 308

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  LF  +   GF  DV  YN  I G CK  R+  A+ +FD+M ++G +PN VTYNS I 
Sbjct: 309 ARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLID 368

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                 E+  A E+++ M   +   P   +   ++  LC++ R+ +A     +LV+ G  
Sbjct: 369 CLCKAGEVSGAWEIVKTMHR-SGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLT 427

Query: 391 PREYTYKLV----CDALNAAEEPSLLDD 414
           P  ++Y ++    C +    E  +LL D
Sbjct: 428 PDVWSYTILIHGCCTSRRMGEAMNLLRD 455



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 28/230 (12%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G V+ + + F ++ +     D  A N V+  LC  G   KA    +++   GF    +  
Sbjct: 86  GHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGF--SLNEV 143

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM------LFKGFV--PDVVAYNCLI 294
           +Y ILI+  C+ G           R+ EA +L R++         GF    +VV Y+ +I
Sbjct: 144 SYGILINGLCENG-----------RVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVI 192

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           D  C+   ++   E +++M   G  PN  TY S IR    V +  +   ++ +M  +  G
Sbjct: 193 DCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEM--IRRG 250

Query: 355 VPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +  S   +T +I  LC+ G ++EAR+   E+V+ G  P   T    C AL
Sbjct: 251 LDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVT----CTAL 296



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 15/148 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L+DM  +     + T S  CLI  L   G ++ A      M      PD   Y+++++
Sbjct: 451 NLLRDMHLKNLVPHIVTYS--CLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLD 508

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           AL +  + ++A FL  QM   G    PDV  YTI+I  YCK             RI EA 
Sbjct: 509 ALWKKQHLDEAVFLFNQMIKRGLE--PDVMCYTIMIDGYCK-----------SERIDEAI 555

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           +LFR M  K  VPD+V Y  L +   K+
Sbjct: 556 NLFREMHMKNLVPDIVTYTILFNAVFKS 583



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 11/156 (7%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +F  +L +G+  D VA N ++ G C    + +ALE  D++   G   N V+Y   I    
Sbjct: 94  IFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLC 153

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTS-------SSYTPIIHALCEAGRVLEARDFLAELVD 386
               +++A+ ++R ++                  Y+ +I  LC  G V E  +F  E++ 
Sbjct: 154 ENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMG 213

Query: 387 GGSVPREYTY----KLVCDALNAAEEPSLLDDGLRK 418
            G  P E+TY    + +C      E   L+D+ +R+
Sbjct: 214 NGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRR 249



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             R   +   W  L +M  +G   L  T + + L+  L ++  ++EA+  F +M +    
Sbjct: 475 LCRSGRISNAWRLLNEMHVKG--PLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLE 532

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
           PDV  Y ++I+  C+    ++A  L  +M +      PD+ TYTIL ++  K G  +
Sbjct: 533 PDVMCYTIMIDGYCKSERIDEAINLFREMHMKNL--VPDIVTYTILFNAVFKSGSNS 587


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 16/225 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDV  +NV+++ LC+    N+A+ L  ++   G R  P V ++  LI+ YCK G      
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLR--PTVVSFNTLINGYCKSG------ 274

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                 + +   L R M+     PDV  Y+ LI+G CK  +++ A +LF +M  +G +PN
Sbjct: 275 -----NLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPN 329

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
            VT+ + I  + V    D  +E+ ++M  L  GV P   +Y  +I+ LC+ G + EA+  
Sbjct: 330 DVTFTTLINGHCVTGRADLGMEIYQQM--LRKGVKPDVITYNTLINGLCKVGDLREAKKL 387

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           + E+   G  P ++TY ++ D      +     +  ++ +++GIE
Sbjct: 388 VIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIE 432



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 125/263 (47%), Gaps = 55/263 (20%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA----RFLLEQM 230
           L+  L +E  +NEA   F  + +   RP V ++N +IN  C+ GN ++     RF++E  
Sbjct: 231 LMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMEN- 289

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                R  PDV+TY++LI+  CK G           ++ +AN LF  M  +G VP+ V +
Sbjct: 290 -----RVFPDVFTYSVLINGLCKEG-----------QLDDANKLFLEMCDRGLVPNDVTF 333

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA----IEMMR 346
             LI+G C T R +  +E++  M +KG  P+ +TYN+ I     V ++ +A    IEM +
Sbjct: 334 TTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQ 393

Query: 347 -----------------------------KMQNLNHGVPTSS-SYTPIIHALCEAGRVLE 376
                                        + + +  G+   + ++T +I   C  G+V+E
Sbjct: 394 RGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIE 453

Query: 377 ARDFLAELVDGGSVPREYTYKLV 399
           A   L E+++ G  P + TY +V
Sbjct: 454 AERTLREMLEAGIKPDDATYTMV 476



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 109/234 (46%), Gaps = 16/234 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + LI  L +EG +++A   F  M      P+   +  +IN  C  G  +    + +QM
Sbjct: 297 TYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQM 356

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +  PDV TY  LI+  CK G            + EA  L   M  +G  PD   Y
Sbjct: 357 LRKGVK--PDVITYNTLINGLCKVG-----------DLREAKKLVIEMTQRGLKPDKFTY 403

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LIDGCCK   +E ALE+  +M K+G   + V + + I  +    ++ +A   +R+M  
Sbjct: 404 TMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREM-- 461

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           L  G+ P  ++YT +IH  C+ G V      L E+   G VP   TY ++ + L
Sbjct: 462 LEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGL 515



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 14/232 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI      G  +  +  + +M +   +PDV  YN +IN LC+VG+  +A+ L+ +M
Sbjct: 332 TFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEM 391

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +  PD +TYT+LI   CK G            +  A  + + M+ +G   D VA+
Sbjct: 392 TQRGLK--PDKFTYTMLIDGCCKEG-----------DLESALEIRKEMVKEGIELDNVAF 438

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  ++  A     +M + G  P+  TY   I  +    ++    +++++MQ 
Sbjct: 439 TALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQC 498

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
             H VP   +Y  +++ LC+ G++  A   L  +++ G VP + TY ++ + 
Sbjct: 499 DGH-VPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEG 549



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 1/144 (0%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G+ PDV  +N L+   CK ++I  A  LF ++ K+G  P  V++N+ I  Y     +D+ 
Sbjct: 220 GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQG 279

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
             + R M   N   P   +Y+ +I+ LC+ G++ +A     E+ D G VP + T+  + +
Sbjct: 280 FRLKRFMME-NRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLIN 338

Query: 402 ALNAAEEPSLLDDGLRKRIRDGIE 425
                    L  +  ++ +R G++
Sbjct: 339 GHCVTGRADLGMEIYQQMLRKGVK 362


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 16/242 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
             K+M+ RG      T ++  LI  L + G++ +AL  F +M+    +  VY YN +IN 
Sbjct: 360 LFKEMAGRGLEPNEVTYAI--LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLING 417

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+ G+ ++AR LL  M   G    P   +Y+ LI+  C+ G  + C +           
Sbjct: 418 YCKQGSLDRARGLLSGMVKEGL--TPTAASYSPLIAGLCRNGDLSSCME----------- 464

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L R M  +G   +   +  LI+G CK  +++ A  LFD M     IPN VT+N  I  Y 
Sbjct: 465 LHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYC 524

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           +V  I KA ++  +M  +    P + +Y  +I  LC    V +A +F+A+L +  +V   
Sbjct: 525 LVGNIRKAFQLYDQMVEMGLK-PDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNN 583

Query: 394 YT 395
           ++
Sbjct: 584 FS 585



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 22/275 (8%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEA 188
           +E+T + +   F R   ++       DM R G       S   C  +I  L ++ LV EA
Sbjct: 267 DEVTYRTLVYGFCRMEELEMALRITHDMIRLG----FVPSEANCSFMIDELRKKELVEEA 322

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
            +   ++      P+V+AYN +I+ LC+   F+ A  L ++M   G    P+  TY ILI
Sbjct: 323 FSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLE--PNEVTYAILI 380

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
            + CK GM           I +A  LF  M  KG    V  YN LI+G CK   ++RA  
Sbjct: 381 HALCKRGM-----------IEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARG 429

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHA 367
           L   M K+G  P   +Y+  I       ++   +E+ R+M     G+  ++ ++T +I+ 
Sbjct: 430 LLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMA--ERGIAWNNYTFTALING 487

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            C+  ++ EA     +++D   +P E T+ ++ + 
Sbjct: 488 FCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEG 522



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 149/339 (43%), Gaps = 27/339 (7%)

Query: 108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARG--NNVKGLWDFLKDMSRRG-NG 164
           +T G++KA EF   +E  +   +N      +   F  G       LWD   +M+ RG   
Sbjct: 560 LTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWD---EMAVRGVKL 616

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +LV   S T ++    ++    ++   F  MK+   +PD   Y  +I+AL +  N  +A 
Sbjct: 617 DLV---SFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQAL 673

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
              +QM + G+   P+  T+T+LI++ CK G            +  A  L + ML    +
Sbjct: 674 NCWDQMVVDGY--SPNTVTHTVLINNLCKSGY-----------LGSAELLCKEMLAGNVL 720

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+   YNC +D       +E+A +L   M  +G + + V++N  I+      +I +AI++
Sbjct: 721 PNKFTYNCFLDYFATEGDMEKAKDLHSAM-LQGHLASIVSFNILIKGLCKAGKIQEAIDL 779

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           M K+       P   SY+ IIH LC+ G + +A +   E++  G  P    Y +     N
Sbjct: 780 MSKITESGFS-PDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCN 838

Query: 405 AAEEPSLLDDGLRKRIRDGIEYR---FRQVMKVKPIMKH 440
              E           IR G++     +R ++    +M H
Sbjct: 839 VHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMLH 877



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 14/212 (6%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           F +M Q     D Y Y   I A C   N + AR L+ +ME  G +       Y +L+   
Sbjct: 186 FDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKA--SAVPYNVLMYGL 243

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK             R+ EA  +  +M+  G   D V Y  L+ G C+   +E AL +  
Sbjct: 244 CK-----------NMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITH 292

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
           DM + G +P+    +  I        +++A  +  K+ +L   VP   +Y  +I  LC+ 
Sbjct: 293 DMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM-VPNVFAYNALIDKLCKN 351

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            R  +A     E+   G  P E TY ++  AL
Sbjct: 352 ERFDDADRLFKEMAGRGLEPNEVTYAILIHAL 383



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           C +     EG + +A      M Q      + ++N++I  LC+ G   +A  L+ ++   
Sbjct: 728 CFLDYFATEGDMEKAKDLHSAMLQGHL-ASIVSFNILIKGLCKAGKIQEAIDLMSKITES 786

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           GF   PD  +Y+ +I   CK G            I +A  L+  ML+KG  PDVVAYN  
Sbjct: 787 GF--SPDCISYSTIIHELCKMG-----------DINKAFELWNEMLYKGLKPDVVAYNIF 833

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
           I  C      ++AL ++ +M + G  PN  TY + +   S++   D
Sbjct: 834 IRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMLHYD 879



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 14/221 (6%)

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           Y  + ++ +L ++  F  AR L ++M   G     D Y YT  I +YC+     G R  +
Sbjct: 164 YTASQILFSLVKIRQFALARDLFDKMLQSGVHL--DEYVYTAGIRAYCESRNLDGARGLV 221

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
            R           M  +G     V YN L+ G CK  R++ A+E+ + M   G   + VT
Sbjct: 222 VR-----------MESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVT 270

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y + +  +  + E++ A+ +   M  L   VP+ ++ + +I  L +   V EA     +L
Sbjct: 271 YRTLVYGFCRMEELEMALRITHDMIRLGF-VPSEANCSFMIDELRKKELVEEAFSLACKL 329

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
            D G VP  + Y  + D L   E     D   ++    G+E
Sbjct: 330 GDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLE 370


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 122/286 (42%), Gaps = 63/286 (22%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G ++T  + T L+    + G  + A     +M    C+ D+Y Y+V++ ALC+    N+A
Sbjct: 590 GVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEA 649

Query: 224 RFLLEQMELPGFRC---------------------------------PPDVYTYTILISS 250
             +L+QM + G +C                                  P   TYT+ ISS
Sbjct: 650 LSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISS 709

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
           YCK G           RI EA HL   M   G  PDVV YN  I+GC     I+RA    
Sbjct: 710 YCKIG-----------RIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTL 758

Query: 311 DDMNKKGCIPNRVTYNSFIRYY---SVVN-------------EIDKAIEMMRKMQNLNHG 354
             M    C PN  TY   ++++   S++N             E++   +++ +M  + HG
Sbjct: 759 KRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWIELNMVWQLLERM--MKHG 816

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           + PT  +Y+ II   C+A R+ EA   L  ++     P E  Y ++
Sbjct: 817 LNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTML 862



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 124/293 (42%), Gaps = 38/293 (12%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE  I  ARG         L +M  RG    V T +   +I    + G + +AL     
Sbjct: 295 CKEGRIHDARG--------LLDEMPLRGVVPSVWTYNA--MIDGYCKSGRMKDALGIKAL 344

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M+Q  C PD + YN +I  LC  G  ++A  LL      GF   P V T+T LI+ YCK 
Sbjct: 345 MEQNGCNPDDWTYNSLIYGLCG-GKLDEAEELLNGAIARGF--TPTVITFTNLINGYCKA 401

Query: 255 G------------MQTGCRKAIRR------------RIWEANHLFRLMLFKGFVPDVVAY 290
                        + + C+  ++             R+ EA      M   G  P+VV Y
Sbjct: 402 ERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTY 461

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             +IDG CK   +  ALE+F  M  +GC PN  TY S I       ++ KA+ ++ KMQ 
Sbjct: 462 TSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQE 521

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            +   P   +YT +I   C+      A      +   G  P E  Y ++ DAL
Sbjct: 522 -DGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDAL 573



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 15/232 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           S T LI+ L E   V EAL   + M    C  +++ Y ++I  LC+ G  + AR LL++M
Sbjct: 251 SYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEM 310

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            L G    P V+TY  +I  YCK G           R+ +A  +  LM   G  PD   Y
Sbjct: 311 PLRGV--VPSVWTYNAMIDGYCKSG-----------RMKDALGIKALMEQNGCNPDDWTY 357

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N LI G C   +++ A EL +    +G  P  +T+ + I  Y     ID A+ +   M +
Sbjct: 358 NSLIYGLCGG-KLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMIS 416

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            N  +    +Y  +I+ L +  R+ EA++ L E+   G  P   TY  + D 
Sbjct: 417 SNCKLDL-QAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDG 467



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 105/251 (41%), Gaps = 46/251 (18%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL     M    C+ D+ AY V+IN L +     +A+  L +M   G    P+V TY
Sbjct: 404 IDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGL--APNVVTY 461

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           T +I  YCK GM           +  A  +F+LM  +G  P+   Y  LI G  +  ++ 
Sbjct: 462 TSIIDGYCKVGM-----------VGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLH 510

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
           +A+ L   M + G  P  +TY + I+     +E D A  +   M+  N   P   +Y  +
Sbjct: 511 KAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQ-NGLTPDEQAYNVL 569

Query: 365 IHALCEAGRVLEARDFL------------AELVDG--------------------GSVPR 392
             ALC++GR  EA  FL              LVDG                    G    
Sbjct: 570 TDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKAD 629

Query: 393 EYTYKLVCDAL 403
            YTY ++  AL
Sbjct: 630 LYTYSVLLQAL 640



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 115/256 (44%), Gaps = 18/256 (7%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G L  T +   +I    ++G +  A   F  +++   + D Y  N ++   CR  +  KA
Sbjct: 174 GLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKA 233

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
            +LL  M L G  C  + Y+YTILI   C+            R + EA  L  +M+  G 
Sbjct: 234 CWLLMMMPLMG--CRRNEYSYTILIQGLCE-----------ARCVREALVLVFMMVHDGC 280

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
             ++  Y  LI G CK  RI  A  L D+M  +G +P+  TYN+ I  Y     +  A+ 
Sbjct: 281 SLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALG 340

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +   M+  N   P   +Y  +I+ LC  G++ EA + L   +  G  P   T+  + +  
Sbjct: 341 IKALMEQ-NGCNPDDWTYNSLIYGLC-GGKLDEAEELLNGAIARGFTPTVITFTNLINGY 398

Query: 404 NAAEEPSLLDDGLRKR 419
             AE    +DD LR +
Sbjct: 399 CKAER---IDDALRVK 411



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 10/247 (4%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           +G   + ++ T  I    + G + EA      M++    PDV  YN+ IN    +G  ++
Sbjct: 694 SGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDR 753

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW---EANHLFRL-- 277
           A   L++M      C P+ +TY +L+  + K  +           +W   E N +++L  
Sbjct: 754 AFSTLKRM--VDASCEPNCWTYWLLLKHFLKMSL-INAHYVDTSGMWNWIELNMVWQLLE 810

Query: 278 -MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
            M+  G  P VV Y+ +I G CK  R+E A  L D M  K   PN   Y   I+    + 
Sbjct: 811 RMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIK 870

Query: 337 EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
              KA+  +  M       P   SY  +I  LC+ G    A+    +L+       E  +
Sbjct: 871 LFGKAVSFVTDMIEFGFQ-PQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAW 929

Query: 397 KLVCDAL 403
           K++ D L
Sbjct: 930 KILNDGL 936



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 103/246 (41%), Gaps = 46/246 (18%)

Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALC------------------------------ 215
           + A   F  M+Q    PD  AYNV+ +ALC                              
Sbjct: 545 DNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDG 604

Query: 216 --RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
             + GN + A  L+E+M   G  C  D+YTY++L+ + CK           ++++ EA  
Sbjct: 605 FSKAGNTDFAAVLIEKMVNEG--CKADLYTYSVLLQALCK-----------QKKLNEALS 651

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           +   M   G   ++VAY  +I    K  + + A  LF++M   G  P+  TY  FI  Y 
Sbjct: 652 ILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYC 711

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
            +  I++A  ++ +M+  +   P   +Y   I+     G +  A   L  +VD    P  
Sbjct: 712 KIGRIEEAEHLIGEMER-DGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNC 770

Query: 394 YTYKLV 399
           +TY L+
Sbjct: 771 WTYWLL 776



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 98/259 (37%), Gaps = 52/259 (20%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI  L ++  +++A+A   +M++    P V  Y  +I   C+   F+ A  L E ME  G
Sbjct: 499 LIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNG 558

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               PD   Y +L  + CK G               A   +  ++ KG V   V Y  L+
Sbjct: 559 L--TPDEQAYNVLTDALCKSG--------------RAEEAYSFLVRKGVVLTKVTYTSLV 602

Query: 295 DG-----------------------------------CCKTYRIERALELFDDMNKKGCI 319
           DG                                    CK  ++  AL + D M   G  
Sbjct: 603 DGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVK 662

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
            N V Y   I       + D A  +  +M +  H  P++++YT  I + C+ GR+ EA  
Sbjct: 663 CNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHK-PSATTYTVFISSYCKIGRIEEAEH 721

Query: 380 FLAELVDGGSVPREYTYKL 398
            + E+   G  P   TY +
Sbjct: 722 LIGEMERDGVTPDVVTYNI 740



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 1/130 (0%)

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L+  ++ +G +PD V YN +I   CK   +  A   F  + + G   +  T N+ +  Y 
Sbjct: 166 LYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYC 225

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
             +++ KA  ++  M  L        SYT +I  LCEA  V EA   +  +V  G     
Sbjct: 226 RTSDLRKACWLLM-MMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNL 284

Query: 394 YTYKLVCDAL 403
           +TY L+   L
Sbjct: 285 HTYTLLIKGL 294


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M     +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 189 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGL--VPNGV 246

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 247 TFTTLIDGHCKNG-----------RVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGD 295

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M  KG  P++++Y + I       +++ A E  ++M   N  +    +YT
Sbjct: 296 LKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLD-DVAYT 354

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 355 ALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRD 414

Query: 423 G 423
           G
Sbjct: 415 G 415



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 105/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A  + + +   G R  P V ++  L++ Y + G        
Sbjct: 140 LYFFNILMHRFCKEGDIRVALSVFDAITKWGLR--PSVVSFNTLMNGYIRLG-------- 189

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG +P
Sbjct: 190 ------DLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVP 243

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+
Sbjct: 244 NGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQ 300

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + +Y  + D 
Sbjct: 301 DLIDEMRMKGLKPDKISYTTLIDG 324



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 26/234 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG   TT     LI    + G V+ A+  + +
Sbjct: 221 CKE-----SKMDDANELFDEMLDKGLVPNGVTFTT-----LIDGHCKNGRVDLAMEVYKQ 270

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G +  PD  +YT LI   CK 
Sbjct: 271 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLK--PDKISYTTLIDGCCKE 328

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 329 GDLETAFEH--RKRMIQEN--IRL--------DDVAYTALISGLCQEGRSIDAEKMLREM 376

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
              G  P+  TY   I  +    ++    +++++MQ   H VP+  +Y  +++ 
Sbjct: 377 LSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGH-VPSVVTYNVLMNG 429



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 30/243 (12%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   +   A N++   + R G  + +      +E  G +   D+Y +
Sbjct: 15  HTLHSYCTMIHFLCTHQMLPEAKNLIQVVVSRKGKNSASAVFAAILETQGTQ-RSDIYVF 73

Query: 245 TILISSYCKYGM---QTGCRKAIR-RRIWEA--------NHLFRLMLFK----------- 281
           + LI++Y + G       C +  R  + W           HL +L  FK           
Sbjct: 74  SGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWXFYKEILE 133

Query: 282 -GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G+   +  +N L+   CK   I  AL +FD + K G  P+ V++N+ +  Y  + ++D+
Sbjct: 134 CGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDE 193

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
              +   M     GV P   +Y+ +I+ LC+  ++ +A +   E++D G VP   T+  +
Sbjct: 194 GFRLKSAMH--ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTL 251

Query: 400 CDA 402
            D 
Sbjct: 252 IDG 254


>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 25/248 (10%)

Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
           IK + + G V +AL    RM +F C PD    N+++  LCRV   ++ R +L +++  G 
Sbjct: 235 IKGVCQVGDVQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGV 294

Query: 236 RCPPDVYTYTILISSYCK----------YGMQTGCRKAIRRRIW--------------EA 271
            C P+V TYT +IS YCK          Y    GC        +               A
Sbjct: 295 -CMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSA 353

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +++ M+ +   PDVV ++ LIDG C+  +++ A+  + +M++    PN  T++  I  
Sbjct: 354 VAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILS 413

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           +   N   +A+  ++++       P +    P+I  LC+ G+V EA   L E+   G  P
Sbjct: 414 FCKQNRSAEALRFLKELNMRTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGCRP 473

Query: 392 REYTYKLV 399
            +YTY ++
Sbjct: 474 DKYTYTIL 481



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 15/234 (6%)

Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           +I +L +     +AL  F +M  Q    P+    + +  +    G  + A  LL +   P
Sbjct: 127 VISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAAAALLSKA--P 184

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAYNC 292
            F C  + Y Y  L++S+   G           R+ +A  LF   +  G + PDV ++N 
Sbjct: 185 QFGCCVEAYAYNKLMNSFIGCG-----------RVQDAVALFEGWIQGGAYSPDVWSFNV 233

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
            I G C+   +++ALEL + M + GC P+ VT N  +     V E+ +  E++R++Q   
Sbjct: 234 AIKGVCQVGDVQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDG 293

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
             +P   +YT +I   C++GR+ +A     +++  G+ P   TY ++ +    A
Sbjct: 294 VCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKA 347



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 30/229 (13%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G      +   LI   G+ G +  A+A + +M   RC PDV  ++ +I+  CR G  +
Sbjct: 327 GCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLD 386

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCK-------------YGMQTG-------CR 261
            A  +    E+  ++  P+ +T++I+I S+CK               M+T        C 
Sbjct: 387 DA--MRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRFLKELNMRTDIAPRAFICN 444

Query: 262 KAIR-----RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
             I       ++ EAN +   M  KG  PD   Y  LI G C   RI  A+  F+ M   
Sbjct: 445 PVIDVLCKGGKVDEANLILMEMEGKGCRPDKYTYTILIIGHCMKGRISEAITFFNKMVDT 504

Query: 317 GCIPNRVTYNSFIRYY---SVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           GC P+ +T NSFI       + +E+D+ +++     + +  VP+  S +
Sbjct: 505 GCSPDSITVNSFIGCLLKAGMPSEVDRIMKIASGSTSSSQEVPSPVSQS 553



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 68/187 (36%), Gaps = 10/187 (5%)

Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
           PP  ++Y  +IS  C+    T   K   +   ++ H           P+    + L   C
Sbjct: 118 PPSAHSYRYVISMLCQSSRHTDALKLFDQMTDQSGHF----------PNARFLSFLAGSC 167

Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
                ++ A  L     + GC      YN  +  +     +  A+ +           P 
Sbjct: 168 ANAGFLDAAAALLSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPD 227

Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
             S+   I  +C+ G V +A + +  + + G  P   T  ++   L   +E S   + LR
Sbjct: 228 VWSFNVAIKGVCQVGDVQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLR 287

Query: 418 KRIRDGI 424
           +  RDG+
Sbjct: 288 RLQRDGV 294


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 136/289 (47%), Gaps = 29/289 (10%)

Query: 122 VERFFDFFHNEMTCKEMGIVF----ARGNNVKGLWDFLKDMSR----RGNGELVTTSSVT 173
           + R  D F N+++  +  +VF     RG+  + L  F K M R    + N  + T     
Sbjct: 97  IARCLDVFKNKLSLNDFALVFKEFAQRGDWQRSLRLF-KYMQRQIWCKPNEHIYT----- 150

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I VLG EGL+ +    F  M      P V+++  +INA  R G +  +  LL++M+  
Sbjct: 151 IMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKE 210

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN-HLFRLMLFKGFVPDVVAYNC 292
             R  P + TY  +I+S  + G+            WE    LF  M  +G   D+V YN 
Sbjct: 211 --RVSPSILTYNTVINSCARGGLD-----------WEELLGLFAQMRHEGIQADIVTYNT 257

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           L+  C +    + A  +F  MN+ G +P+  TY+  +  +  +N ++K  E++++M++  
Sbjct: 258 LLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMES-G 316

Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
              P  +SY  ++ A  ++G + EA     ++   G VP   TY ++ +
Sbjct: 317 GSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLN 365



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 124/306 (40%), Gaps = 37/306 (12%)

Query: 124 RFFDFFHNEMTCKE-------MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLI 176
           R F +   ++ CK        M  V  R   ++   +   +M   G    V   S T LI
Sbjct: 131 RLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVF--SFTALI 188

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQMELPGF 235
              G  G    +L    RMK+ R  P +  YN VIN+  R G ++ +   L  QM   G 
Sbjct: 189 NAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGI 248

Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIR------------------------RRIWEA 271
           +   D+ TY  L+S+  + G+        R                         R+ + 
Sbjct: 249 QA--DIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKV 306

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
           + L + M   G  PD+ +YN L++   ++  I+ A+ +F  M   GC+PN  TY+  +  
Sbjct: 307 SELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNL 366

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           Y      D   ++  +M+ +++  P +++Y  +I+   E G   E      ++V+    P
Sbjct: 367 YGRHGRYDDVRDLFLEMK-VSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEP 425

Query: 392 REYTYK 397
              TY+
Sbjct: 426 NMETYE 431



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 124/286 (43%), Gaps = 35/286 (12%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            F + N ++ + + LK+M   G+   +T+ +V  L++   + G + EA+  F +M+   C
Sbjct: 296 TFGKLNRLEKVSELLKEMESGGSFPDITSYNV--LLEAHAQSGSIKEAMGVFRQMQGAGC 353

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----- 255
            P+   Y++++N   R G ++  R L  +M++      P+  TY ILI+ + + G     
Sbjct: 354 VPNAATYSILLNLYGRHGRYDDVRDLFLEMKVS--NTEPNAATYNILINVFGEGGYFKEV 411

Query: 256 ---------------MQT------GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
                          M+T       C K       +A  +   M  KG VP   AY  +I
Sbjct: 412 VTLFHDMVEENVEPNMETYEGLIFACGKGGLHE--DAKKILLHMNEKGVVPSSKAYTGVI 469

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +   +    E AL  F+ MN+ G  P   TYNS I+ ++      ++  ++ KM     G
Sbjct: 470 EAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMG--QSG 527

Query: 355 VPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           V  +  ++  +I A  + G+  EA     E+      P E T + V
Sbjct: 528 VARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAV 573



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 85/221 (38%), Gaps = 53/221 (23%)

Query: 139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS--VTCLIKVLGEEGLVNEALATFYRMK 196
           G++FA G    GL +  K +    N + V  SS   T +I+  G+  L  EAL  F  M 
Sbjct: 432 GLIFACGKG--GLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMN 489

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-------------------------- 230
           +   +P V  YN +I    + G + ++  +L +M                          
Sbjct: 490 EVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFE 549

Query: 231 -------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
                  E+   RC PD  T   ++S YC  G+           + E+   F  +   G 
Sbjct: 550 EAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGL-----------VEESEEQFGEIKALGI 598

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
           +P V+ Y  ++    K  R + A +L D+M       NRV+
Sbjct: 599 LPSVMCYCMMLAVYAKADRWDDAHQLLDEM-----FTNRVS 634


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 18/226 (7%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGC 260
           PDV  +NV+++ LC+    N+A+ L  ++   G R  P V ++  LI+ YCK G +  G 
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLR--PTVVSFNTLINGYCKSGNLDQGF 280

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
           R            L R M+     PDV  Y+ LI+G CK  +++ A +LF +M  +G +P
Sbjct: 281 R------------LKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVP 328

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
           N VT+ + I  + V    D  +E+ ++M  L  GV P   +Y  +I+ LC+ G + EA+ 
Sbjct: 329 NDVTFTTLINGHCVTGRADLGMEIYQQM--LRKGVKPDVITYNTLINGLCKVGDLREAKK 386

Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
            + E+   G  P ++TY ++ D      +     +  ++ +++GIE
Sbjct: 387 LVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIE 432



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 125/263 (47%), Gaps = 55/263 (20%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA----RFLLEQM 230
           L+  L +E  +NEA   F  + +   RP V ++N +IN  C+ GN ++     RF++E  
Sbjct: 231 LMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMEN- 289

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                R  PDV+TY++LI+  CK G           ++ +AN LF  M  +G VP+ V +
Sbjct: 290 -----RVFPDVFTYSVLINGLCKEG-----------QLDDANKLFLEMCDRGLVPNDVTF 333

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA----IEMMR 346
             LI+G C T R +  +E++  M +KG  P+ +TYN+ I     V ++ +A    IEM +
Sbjct: 334 TTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQ 393

Query: 347 -----------------------------KMQNLNHGVPTSS-SYTPIIHALCEAGRVLE 376
                                        + + +  G+   + ++T +I   C  G+V+E
Sbjct: 394 RGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIE 453

Query: 377 ARDFLAELVDGGSVPREYTYKLV 399
           A   L E+++ G  P + TY +V
Sbjct: 454 AERTLREMLEAGIKPDDATYTMV 476



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 109/234 (46%), Gaps = 16/234 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + + LI  L +EG +++A   F  M      P+   +  +IN  C  G  +    + +QM
Sbjct: 297 TYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQM 356

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +  PDV TY  LI+  CK G            + EA  L   M  +G  PD   Y
Sbjct: 357 LRKGVK--PDVITYNTLINGLCKVG-----------DLREAKKLVIEMTQRGLKPDKFTY 403

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LIDGCCK   +E ALE+  +M K+G   + V + + I  +    ++ +A   +R+M  
Sbjct: 404 TMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREM-- 461

Query: 351 LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           L  G+ P  ++YT +IH  C+ G V      L E+   G VP   TY ++ + L
Sbjct: 462 LEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGL 515



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 14/229 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI      G  +  +  + +M +   +PDV  YN +IN LC+VG+  +A+ L+ +M
Sbjct: 332 TFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEM 391

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
              G +  PD +TYT+LI   CK G            +  A  + + M+ +G   D VA+
Sbjct: 392 TQRGLK--PDKFTYTMLIDGCCKEG-----------DLESALEIRKEMVKEGIELDNVAF 438

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  ++  A     +M + G  P+  TY   I  +    ++    +++++MQ 
Sbjct: 439 TALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQC 498

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
             H VP   +Y  +++ LC+ G++  A   L  +++ G VP + TY ++
Sbjct: 499 DGH-VPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNIL 546



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 1/144 (0%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G+ PDV  +N L+   CK ++I  A  LF ++ K+G  P  V++N+ I  Y     +D+ 
Sbjct: 220 GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQG 279

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
             + R M   N   P   +Y+ +I+ LC+ G++ +A     E+ D G VP + T+  + +
Sbjct: 280 FRLKRFMME-NRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLIN 338

Query: 402 ALNAAEEPSLLDDGLRKRIRDGIE 425
                    L  +  ++ +R G++
Sbjct: 339 GHCVTGRADLGMEIYQQMLRKGVK 362



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI     EG V EA  T   M +   +PD   Y +VI+  C+ G+      LL++M
Sbjct: 437 AFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEM 496

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
           +  G    P V TY +L++  CK G           ++  AN L   ML  G VPD + Y
Sbjct: 497 QCDGHV--PGVVTYNVLLNGLCKQG-----------QMKNANMLLDAMLNLGVVPDDITY 543

Query: 291 NCLIDGCCKTYR 302
           N L++   + ++
Sbjct: 544 NILLERTLQAWK 555


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 117/238 (49%), Gaps = 20/238 (8%)

Query: 157 DMSRRGNGELVTTSSVT-------CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
           +M+++   E+++T  VT        LI+     G+V++    F  + +F C PDV  YN 
Sbjct: 201 NMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNT 260

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +++ LCR G    A  +++ M        P+V TYT LI  YC            +R I 
Sbjct: 261 LVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCA-----------KREIE 309

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSF 328
           +A  +F  M+ +G   + + YN LI G C+  + E+  ++ +     G   P+  T+N+ 
Sbjct: 310 KALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTL 369

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           +  +     +D A+++  +M  L    P S++Y+ ++ +LC+ G   +A D L +L++
Sbjct: 370 MHCHCHAGNLDDALKVFERMSELKIQ-PDSATYSALVRSLCQGGHYEKAEDLLDKLLE 426



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 124/324 (38%), Gaps = 60/324 (18%)

Query: 109 TLGL----NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNG 164
           TLG     +KA +F++W +    + H E +   M  +  R  ++    +FL  + +R  G
Sbjct: 85  TLGFLRDTSKALQFFNWAQEM-GYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRG 143

Query: 165 EL-VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
            + +       L++     GL  E++  F  MK     P V  +N ++  L + G  N A
Sbjct: 144 IVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMA 203

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           + + ++M                 +S+Y                              G 
Sbjct: 204 KKVYDEM-----------------LSTY------------------------------GV 216

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI----RYYSVVNEID 339
            PD   +N LI G C    ++    +F+D+++ GC P+ VTYN+ +    R   V    +
Sbjct: 217 TPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYN 276

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
               M +K  +LN   P   +YT +I   C    + +A     E+V+ G      TY  +
Sbjct: 277 VVKGMGKKSVDLN---PNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTL 333

Query: 400 CDALNAAEEPSLLDDGLRKRIRDG 423
              L  A +   + D L     DG
Sbjct: 334 IKGLCEARKFEKIKDILEGTAGDG 357



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 112/286 (39%), Gaps = 21/286 (7%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R   V   ++ +K M ++         + T LI+    +  + +ALA F  M     + +
Sbjct: 267 RAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKAN 326

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              YN +I  LC    F K + +LE     G    PD  T+  L+  +C  G        
Sbjct: 327 NITYNTLIKGLCEARKFEKIKDILEGTAGDG-TFSPDTCTFNTLMHCHCHAG-------- 377

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK------- 316
               + +A  +F  M      PD   Y+ L+   C+    E+A +L D + ++       
Sbjct: 378 ---NLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGD 434

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           GC P    YN   +Y     +  KA +  R++  +  G     SY  +I   C+ G    
Sbjct: 435 GCKPLVAAYNPIFKYLCETGKTKKAEKAFRQL--MRRGTQDPPSYKTLIMGHCKEGTFES 492

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
             + L  ++    +P   TY+ + + L   ++P L    L K +R 
Sbjct: 493 GYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRS 538



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 16/131 (12%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C+P V AYN +   LC  G   KA     Q+   G + PP   +Y  LI  +CK G    
Sbjct: 436 CKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPP---SYKTLIMGHCKEG---- 488

Query: 260 CRKAIRRRIWEANH-LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                    +E+ + L  LML K F+PD   Y  LI+G     +   AL+  + M +   
Sbjct: 489 --------TFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSH 540

Query: 319 IPNRVTYNSFI 329
            PN  T++S +
Sbjct: 541 RPNSSTFHSIL 551


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 117/251 (46%), Gaps = 16/251 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            L DM  +G G  +       +I     +G+V++AL     M++     D+Y YN +   
Sbjct: 130 LLADMQGQGVG--LNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACG 187

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           LCRV   ++A+ LL  M   G    P+  TYT LIS +CK G            + EA  
Sbjct: 188 LCRVNRLDEAKTLLHIMIEMGV--VPNYVTYTTLISIHCKDG-----------DMVEARR 234

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           LFR M  KG  P VV YN +I G  K   I  A     +M KKG +P+  TY S +  + 
Sbjct: 235 LFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHC 294

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           V  ++D A+++  +M+      P   +YT +I  L + GR   A     +++  G +P +
Sbjct: 295 VNGKVDVALKLFEEMKQRGT-EPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDD 353

Query: 394 YTYKLVCDALN 404
             Y  +  +L+
Sbjct: 354 SLYSALVGSLH 364



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 89/227 (39%), Gaps = 27/227 (11%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM---- 256
            P+   Y V+IN  C++G    A  LL  M+  G     +   +  +I  YC+ GM    
Sbjct: 105 EPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGL--NQIIFNTMIDGYCRKGMVDDA 162

Query: 257 --------------------QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                                  C      R+ EA  L  +M+  G VP+ V Y  LI  
Sbjct: 163 LKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISI 222

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            CK   +  A  LF +M +KG  P+ VTYN  I  Y+    I +A E  RK       VP
Sbjct: 223 HCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREA-ERFRKEMEKKGFVP 281

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
              +Y  ++H  C  G+V  A     E+   G+ P    Y  +   L
Sbjct: 282 DVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGL 328



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 34/255 (13%)

Query: 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
           V+  + + ++  L + G V++A      M +     +   YN +++   R  +  + + +
Sbjct: 12  VSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEI 71

Query: 227 LEQMELPGFRC---------PPDVY-------------TYTILISSYCKYGMQTGCRKAI 264
           LE ME  G            PP V              TY +LI+ +CK G         
Sbjct: 72  LEIMENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIG--------- 122

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
             ++  A  L   M  +G   + + +N +IDG C+   ++ AL++   M K G   +  T
Sbjct: 123 --QMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYT 180

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           YN+       VN +D+A  ++  M  +   VP   +YT +I   C+ G ++EAR    E+
Sbjct: 181 YNTLACGLCRVNRLDEAKTLLHIMIEMGV-VPNYVTYTTLISIHCKDGDMVEARRLFREM 239

Query: 385 VDGGSVPREYTYKLV 399
            + G+ P   TY ++
Sbjct: 240 AEKGATPSVVTYNVM 254



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 26/153 (16%)

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           +A + ++DG CK+ R++ A  L DDM + G   N + YNS +  Y    +  +  E++  
Sbjct: 15  LAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEI 74

Query: 348 MQN----------------------LNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           M+N                      + +GV P   +Y  +I+  C+ G++  A   LA++
Sbjct: 75  MENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADM 134

Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
              G    +  +  + D         ++DD L+
Sbjct: 135 QGQGVGLNQIIFNTMIDGYC---RKGMVDDALK 164


>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g77360, mitochondrial; Flags: Precursor
 gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 164/381 (43%), Gaps = 44/381 (11%)

Query: 45  IESVADVLKSIPRFFFQSPR----SIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPA 100
           +  VADV K+I +    SP+    S   Q+G R    + Q +++    ++ N     G  
Sbjct: 65  VRDVADVAKNISKVLMSSPQLVLDSALDQSGLR----VSQEVVE----DVLNRFRNAGLL 116

Query: 101 AYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSR 160
            YR              F+ W E+   + H+      M    A+    K +WD +  M +
Sbjct: 117 TYR--------------FFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRK 162

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           +   +++   +   +++       V+EA+  F  M+++   P++ A+N +++ALC+  N 
Sbjct: 163 K---KMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNV 219

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            KA+ + E M     R  PD  TY+IL+  + K              + +A  +FR M+ 
Sbjct: 220 RKAQEVFENMR---DRFTPDSKTYSILLEGWGK-----------EPNLPKAREVFREMID 265

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G  PD+V Y+ ++D  CK  R++ AL +   M+   C P    Y+  +  Y   N +++
Sbjct: 266 AGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEE 325

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A++   +M+         + +  +I A C+A R+      L E+   G  P   +  ++ 
Sbjct: 326 AVDTFLEMERSGMKADV-AVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIIL 384

Query: 401 DALNAAEEPSLLDDGLRKRIR 421
             L    E     D  RK I+
Sbjct: 385 RHLIERGEKDEAFDVFRKMIK 405



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 43/190 (22%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           TT   + L+   G E  + EA+ TF  M++   + DV  +N +I A C+         +L
Sbjct: 306 TTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVL 365

Query: 228 EQMELPG---------------------------FR-----CPPDVYTYTILISSYCKYG 255
           ++M+  G                           FR     C PD  TYT++I  +C+  
Sbjct: 366 KEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEPDADTYTMVIKMFCE-- 423

Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
                    ++ +  A+ +++ M  KG  P +  ++ LI+G C+    ++A  L ++M +
Sbjct: 424 ---------KKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIE 474

Query: 316 KGCIPNRVTY 325
            G  P+ VT+
Sbjct: 475 MGIRPSGVTF 484


>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 105/227 (46%), Gaps = 27/227 (11%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC---KYGMQ 257
            PDV+AYN VI+  C+V     A  +L +M+  GF   PD+ TY I+I S C   K G+ 
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFL--PDIVTYNIMIGSLCNRRKLGLA 191

Query: 258 ---------TGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                      C   +               I EA  L   ML +G +PD+  YN +I G
Sbjct: 192 LKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRG 251

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
            CK    +   +L  +M  +GC PN+VTY+  I        ID+AI +++ M       P
Sbjct: 252 MCKEGMWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIE-KELTP 310

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            + SY P+I ALC+ GR+  A   +  ++  G +P    Y  +  AL
Sbjct: 311 DTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAAL 357



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 15/189 (7%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LI+    EG +NEA+     M      PD+Y YN +I  +C+ G +++   L+
Sbjct: 206 TVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMWDEGEKLV 265

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            +M   G  C P+  TY+ILISS C++G           RI EA  + ++M+ K   PD 
Sbjct: 266 AEMFSRG--CEPNKVTYSILISSLCRFG-----------RIDEAISVLKVMIEKELTPDT 312

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
            +Y+ LI   CK  R++ A+ + D M   GC+P+ V YN+ +         ++A+E+  K
Sbjct: 313 YSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNK 372

Query: 348 MQNLNHGVP 356
           ++ +  G P
Sbjct: 373 LRGM--GCP 379



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 20/235 (8%)

Query: 173 TCLIKVLG---EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           T L+K+L    + G  NE+L     +      PDV     +I       N  KA  ++E 
Sbjct: 69  THLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEI 128

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           +E       PDV+ Y  +IS +CK             RI  A  +   M  +GF+PD+V 
Sbjct: 129 LE---SHTEPDVFAYNAVISGFCKV-----------NRIEAATQVLNRMKARGFLPDIVT 174

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN +I   C   ++  AL++ D +    C+P  +TY   I    V   I++A++++ +M 
Sbjct: 175 YNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEM- 233

Query: 350 NLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            L  G +P   +Y  II  +C+ G   E    +AE+   G  P + TY ++  +L
Sbjct: 234 -LARGLLPDMYTYNAIIRGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSILISSL 287


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 15/234 (6%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-ELPGFRCPPDVYTYTILISSYC 252
           RM +  C PDV +YN ++   C      +A  LL  M +  G  CPP+V +Y I+I+ + 
Sbjct: 155 RMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFF 214

Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
             G           ++ +A +LF  M+ +G  P+VV Y  +IDG CK   ++RA  +F  
Sbjct: 215 TEG-----------QVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQ 263

Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEA 371
           M  KG  P+  TYN  I  Y  + +  + + M+ +M    HG+ P   +Y  +++ LC  
Sbjct: 264 MIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMS--AHGLKPDCYTYGSLLNYLCNN 321

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
           GR  EAR     ++  G  P    Y ++          S + D L   + +G+ 
Sbjct: 322 GRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLS 375



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 123/314 (39%), Gaps = 70/314 (22%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           CLI      G   E +     M     +PD Y Y  ++N LC  G   +ARFL + M   
Sbjct: 278 CLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRK 337

Query: 234 GFRCPPDVYTYTILISSYCKYG------------MQTGCRK------------AIRRRIW 269
           G +  P+V  Y ILI  Y   G            ++ G               A +  I 
Sbjct: 338 GIK--PNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMID 395

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA H+F  M  +G  PDVV Y  LID  CK  R++ A+  F+ M  +G  PN   +NS +
Sbjct: 396 EAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLV 455

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGV---------------------------------- 355
                V++ +KA E   +M  LN G+                                  
Sbjct: 456 YGLCTVDKWEKAKEFYFEM--LNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVG 513

Query: 356 --PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD 413
             P   SYT +I   C  GR+ EA   L  ++  G  P E+TY  +   L+       +D
Sbjct: 514 TRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTL---LHGYCRAGRID 570

Query: 414 DG---LRKRIRDGI 424
           D     R+ +R+GI
Sbjct: 571 DAYGVFREMLRNGI 584



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 29/250 (11%)

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
            ++ +++EA+  F +MKQ    PDV  Y  +I+ALC++G  + A     QM   G    P
Sbjct: 389 AKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGV--AP 446

Query: 240 DVYTYTILISSYCKYG------------MQTG------------CRKAIRRRIWEANHLF 275
           +++ +  L+   C               +  G            C    + ++ +A  L 
Sbjct: 447 NIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLI 506

Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
            LM   G  P V++Y  LI G C   RI+ A +  D M   G  P+  TYN+ +  Y   
Sbjct: 507 DLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRA 566

Query: 336 NEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
             ID A  + R+M  L +G+ P   +Y+ I+H L    R  EA++    ++  G     +
Sbjct: 567 GRIDDAYGVFREM--LRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIW 624

Query: 395 TYKLVCDALN 404
            Y ++ + L+
Sbjct: 625 IYNIILNGLS 634



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 14/225 (6%)

Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
           L  +G V +A      M++   RP V +Y  +I   C VG  ++A   L+ M   G +  
Sbjct: 493 LCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLK-- 550

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PD +TY  L+  YC+ G           RI +A  +FR ML  G  P VV Y+ ++ G  
Sbjct: 551 PDEWTYNTLLHGYCRAG-----------RIDDAYGVFREMLRNGITPGVVTYSTILHGLF 599

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
            T R   A EL+ +M   G   N   YN  +   S  N +D+A ++ + + + +  +   
Sbjct: 600 TTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEI- 658

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
           +++  +I AL ++GR  +A    A +   G VP  +TY L+ + L
Sbjct: 659 TTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENL 703



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 16/195 (8%)

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
            +  PD  TY+ILI  +C+ G           R+      F L+L  G+  + +  N L+
Sbjct: 88  IKVTPDPCTYSILIGCFCRMG-----------RLEHGFATFGLILKSGWRVNNIVINQLL 136

Query: 295 DGCCKTYRIERALE-LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
            G C   R+  A++ L   M + GC P+ V+YN+ ++ +      ++A+E++  M + + 
Sbjct: 137 KGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMAD-SQ 195

Query: 354 G---VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410
           G    P   SY  +I+     G+V +A +   E++D G  P   TY  V D L  A+   
Sbjct: 196 GRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVD 255

Query: 411 LLDDGLRKRIRDGIE 425
             +   ++ I  G++
Sbjct: 256 RAEGVFQQMIDKGVK 270



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 15/219 (6%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           + R   +   +   ++M R G    V T S   ++  L      +EA   +  M     +
Sbjct: 563 YCRAGRIDDAYGVFREMLRNGITPGVVTYST--ILHGLFTTRRFSEAKELYLNMITSGKQ 620

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            +++ YN+++N L +    ++A  L + +    F+   ++ T+ I+I +  K G      
Sbjct: 621 WNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQL--EITTFNIMIGALFKSG------ 672

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R  +A HLF  +   G VPDV  Y  + +   +   +E   +LF  M K G  PN
Sbjct: 673 -----RNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPN 727

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
               N+ +R      +I +A   + K+   N  +  S++
Sbjct: 728 SRMLNALVRRLLHRGDITRAGAYLCKLDEKNFSLEASTT 766


>gi|255660938|gb|ACU25638.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 481

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 134/281 (47%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVZR   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVZRSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LQWDEDLWV 84

Query: 175 L-IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L I   G+ G+V E++  F++M++      + +Y+V+   + R G +  A+    +M   
Sbjct: 85  LMIDSYGKAGIVQESVKLFHKMEELGVERTIKSYDVLFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ I+I  +   G           ++  A   F  M  +   PDV+ YN +
Sbjct: 145 GIE--PTRHTFNIMIWGFFLSG-----------KVETAXRFFEDMKSRDITPDVITYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VT+ + I+ Y  V+ +D A+ ++ +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTHTTLIKGYVAVDRVDDALRLVEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+  +  LC A ++ EAR  L E+VD    P +
Sbjct: 250 GIKPNAITYSTXLPGLCNAEKMSEARSXLKEMVDKYIAPTD 290



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 25/214 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA   F  MK     P V  +  +I     V   + A  L+E+M+  GF   P+  TY
Sbjct: 201 MEEAEKYFVEMKGRNIEPTVVTHTTLIKGYVAVDRVDDALRLVEEMK--GFGIKPNAITY 258

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRI 303
           +  +   C              ++ EA    + M+ K   P D   +  LI G CK   +
Sbjct: 259 STXLPGLCN-----------AEKMSEARSXLKEMVDKYIAPTDNSIFLRLISGQCKAGNL 307

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM---------QNLNHG 354
           + A ++   M +         Y   I  Y    + DKAI ++ K+         Q+ +H 
Sbjct: 308 DAAADVLKAMIRLSVPTEAGHYGVLIENYCKAVQYDKAISLLDKLIEKDIILRPQSTSHM 367

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
            P  S+Y P+I  LC  G+  +A   + +L+  G
Sbjct: 368 EP--SAYNPLIEYLCNNGQTAKAETLVRQLMKLG 399


>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
          Length = 1184

 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 136/298 (45%), Gaps = 19/298 (6%)

Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
           N    F+ W  +   +FH+   CK M ++ ++      +W  +++M R+ N EL+     
Sbjct: 112 NLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEM-RKTNPELIEPELF 170

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             L++      +V +A+     M ++   PD Y +  +++ALC+ G+  +A  + E M  
Sbjct: 171 VVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMR- 229

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
              + PP++  +T L+  +C+ G           ++ EA  +   M   G  PD+V +  
Sbjct: 230 --EKFPPNLRYFTSLLYGWCREG-----------KLMEAKEVLVQMKEAGLEPDIVVFTN 276

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE-IDKAIEMMRKMQNL 351
           L+ G     ++  A +L +DM K+G  PN   Y   I+      + +D+A+ +  +M+  
Sbjct: 277 LLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEME-- 334

Query: 352 NHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
            +G      +YT +I   C+ G + +    L ++   G +P + TY  +  A    E+
Sbjct: 335 RYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQ 392



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 125/302 (41%), Gaps = 54/302 (17%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL-GEEGLVNEALATFYRMKQFRC 200
           +A    +   +D + DM +RG    V  +  T LI+ L   E  ++EA+  F  M+++ C
Sbjct: 281 YAHAGKMADAYDLMNDMRKRGFEPNV--NCYTVLIQALCRTEKRMDEAMRVFVEMERYGC 338

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
             D+  Y  +I+  C+ G  +K   +L+ M   G    P   TY  ++ ++ K      C
Sbjct: 339 EADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVM--PSQVTYMQIMVAHEKKEQFEEC 396

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
            + I +           M  +G  PD++ YN +I   CK   ++ A+ L+++M   G  P
Sbjct: 397 LELIEK-----------MKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSP 445

Query: 321 NRVTYNSFIRYY-------------------------------SVVNEI--DKAIEMMRK 347
              T+   I  +                               S++N +  D  +EM + 
Sbjct: 446 GVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKD 505

Query: 348 MQNLNHGVPTS-----SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           + +      +S     S++T  IHAL   G V EA  +  ++++   +P+  TY  +   
Sbjct: 506 VWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEACSYCLDMMEMDLMPQPNTYAKLMKG 565

Query: 403 LN 404
           LN
Sbjct: 566 LN 567


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 117/238 (49%), Gaps = 20/238 (8%)

Query: 157 DMSRRGNGELVTTSSVT-------CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
           +M+++   E+++T  VT        LI+     G+V++    F  + +F C PDV  YN 
Sbjct: 201 NMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNT 260

Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
           +++ LCR G    A  +++ M        P+V TYT LI  YC            +R I 
Sbjct: 261 LVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCA-----------KREIE 309

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSF 328
           +A  +F  M+ +G   + + YN LI G C+  + E+  ++ +     G   P+  T+N+ 
Sbjct: 310 KALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTL 369

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
           +  +     +D A+++  +M  L    P S++Y+ ++ +LC+ G   +A D L +L++
Sbjct: 370 MHCHCHAGNLDDALKVFERMSELKIQ-PDSATYSALVRSLCQGGHYEKAEDLLDKLLE 426



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 124/324 (38%), Gaps = 60/324 (18%)

Query: 109 TLGL----NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNG 164
           TLG     +KA +F++W +    + H E +   M  +  R  ++    +FL  + +R  G
Sbjct: 85  TLGFLRDTSKALQFFNWAQEM-GYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRG 143

Query: 165 EL-VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
            + +       L++     GL  E++  F  MK     P V  +N ++  L + G  N A
Sbjct: 144 IVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMA 203

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
           + + ++M                 +S+Y                              G 
Sbjct: 204 KKVYDEM-----------------LSTY------------------------------GV 216

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI----RYYSVVNEID 339
            PD   +N LI G C    ++    +F+D+++ GC P+ VTYN+ +    R   V    +
Sbjct: 217 TPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYN 276

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
               M +K  +LN   P   +YT +I   C    + +A     E+V+ G      TY  +
Sbjct: 277 VVKGMGKKSVDLN---PNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTL 333

Query: 400 CDALNAAEEPSLLDDGLRKRIRDG 423
              L  A +   + D L     DG
Sbjct: 334 IKGLCEARKFEKIKDILEGTAGDG 357



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 111/286 (38%), Gaps = 21/286 (7%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           R   V   ++ +K M ++         + T LI+    +  + +ALA F  M     + +
Sbjct: 267 RAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKAN 326

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
              YN +I  LC    F K + +LE     G    PD  T+  L+  +C  G        
Sbjct: 327 NITYNTLIKGLCEARKFEKIKDILEGTAGDG-TFSPDTCTFNTLMHCHCHAG-------- 377

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK------- 316
               + +A  +F  M      PD   Y+ L+   C+    E+A +L D + ++       
Sbjct: 378 ---NLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGD 434

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
           GC P    YN   +Y     +  KA +  R++  +  G     SY  +I   C+ G    
Sbjct: 435 GCKPLVAAYNPIFKYLCETGKTKKAEKAFRQL--MRRGTQDPPSYKTLIMGHCKEGTFES 492

Query: 377 ARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
             + L  ++     P   TY+ + + L   ++P L    L K +R 
Sbjct: 493 GYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRS 538



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 16/131 (12%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C+P V AYN +   LC  G   KA     Q+   G + PP   +Y  LI  +CK G    
Sbjct: 436 CKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPP---SYKTLIMGHCKEG---- 488

Query: 260 CRKAIRRRIWEANH-LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
                    +E+ + L  LML K F PD   Y  LI+G     +   AL+  + M +   
Sbjct: 489 --------TFESGYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRSSH 540

Query: 319 IPNRVTYNSFI 329
            PN  T++S +
Sbjct: 541 RPNSSTFHSIL 551


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 107/217 (49%), Gaps = 14/217 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M      PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 191 GDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGL--VPNSV 248

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G            +  A  +++ ML +  +PD+V YN LI G CK   
Sbjct: 249 TFTTLIDGHCKNGW-----------VDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGD 297

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+  G  P+++TY + I       ++D A E  RKM    +      +YT
Sbjct: 298 LKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFE-HRKMMIQENIRLDDVAYT 356

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
            +I  LC+ GR ++A   L E++  G  P   TY ++
Sbjct: 357 ALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMI 393



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 142 LYFFNILMHRFCKEGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 191

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  +++ A +LFD+M +KG +P
Sbjct: 192 ------DLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVP 245

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A 
Sbjct: 246 NSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSL---LPDLVTYNALIYGLCKKGDLKQAH 302

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 303 DLIDEMSMXGLKPDKITYTTLIDG 326



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 14/204 (6%)

Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
           G +  + + T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A
Sbjct: 242 GLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQA 301

Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
             L+++M + G +  PD  TYT LI   CK G       A   R        ++M+ +  
Sbjct: 302 HDLIDEMSMXGLK--PDKITYTTLIDGCCKEG---DLDTAFEHR--------KMMIQENI 348

Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
             D VAY  LI G C+  R   A ++  +M   G  P+  TY   I  +    ++ K  +
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSK 408

Query: 344 MMRKMQNLNHGVPTSSSYTPIIHA 367
           ++++MQ   H VP+  +Y  +++ 
Sbjct: 409 LLKEMQRDGH-VPSVVTYNVLMNG 431



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 34/245 (13%)

Query: 187 EALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
             L ++  M  F C   ++  A +++   + R G  + +      +E  G +   D+Y +
Sbjct: 17  HTLHSYCAMIHFLCSHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQ-RSDIYVF 75

Query: 245 TILISSYCKYGM---QTGCRKAIR-----------RRIWEANHLFRLMLFK---GFVPDV 287
           + LI++Y + G       C +  R           R++ E  HL +L  FK   GF  ++
Sbjct: 76  SGLITAYLELGFLRDAIDCYRLTREHKFCVPFDTCRKVLE--HLMKLKYFKLVWGFYEEI 133

Query: 288 VA---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
           +          +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  + ++
Sbjct: 134 LECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDL 193

Query: 339 DKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           D+   +   M     GV P   +Y+ +I+ LC+  ++ +A     E+++ G VP   T+ 
Sbjct: 194 DEGFRLKSAMH--ASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFT 251

Query: 398 LVCDA 402
            + D 
Sbjct: 252 TLIDG 256



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 15/153 (9%)

Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
           +  ++K   D + +MS  G      T   T LI    +EG ++ A      M Q   R D
Sbjct: 294 KKGDLKQAHDLIDEMSMXGLKPDKIT--YTTLIDGCCKEGDLDTAFEHRKMMIQENIRLD 351

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
             AY  +I+ LC+ G    A  +L +M   G +  PD  TYT++I+ +CK G        
Sbjct: 352 DVAYTALISGLCQEGRSVDAEKMLREMLSVGLK--PDTRTYTMIINEFCKKG-------- 401

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
               +W+ + L + M   G VP VV YN L++G
Sbjct: 402 ---DVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 16/243 (6%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           R  G L    +   L+    + G   EAL  F  +++    P V  YN++I+  CR+G+ 
Sbjct: 364 RAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDL 423

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            +AR L E+M   G  C PDVYTYTIL+      G    C  A+ R  ++       ML 
Sbjct: 424 EEARRLKEEMVEQG--CLPDVYTYTILMK-----GSHNVCSLAMTREFFDE------MLS 470

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           KG  PD  AYN  I        I ++ +L + +  +G   + VTYN  I        +  
Sbjct: 471 KGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKD 530

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A E+M  MQ +++G+ P   +YT +IHA CE G + EAR F  +++  G  P   TY ++
Sbjct: 531 AEELM--MQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVI 588

Query: 400 CDA 402
             A
Sbjct: 589 IHA 591



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 96/212 (45%), Gaps = 16/212 (7%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           F  M     RPD +AYN  I A   +G+ +K+  L E + L G     D  TY ILI   
Sbjct: 465 FDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISS--DTVTYNILIDGL 522

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK G            + +A  L   M+  G  PD + Y CLI   C+   +  A + F+
Sbjct: 523 CKTG-----------NLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFN 571

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCE 370
           DM   G  P+ VTY   I  Y     +  A    RKM  L  GV P   +Y  +IHALC 
Sbjct: 572 DMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKM--LEEGVEPNEITYNVLIHALCR 629

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            GR   A     E+++ G VP +YTY L+ D 
Sbjct: 630 MGRTQLAYRHFYEMLERGLVPNKYTYTLLIDG 661



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 24/248 (9%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +++VL +    ++  A    M Q    P +  YN ++++  + G  +K   LL++ME  G
Sbjct: 202 VLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARG 261

Query: 235 FRCPPDVYTYTILISSYCKYG-------MQTGCRKAIRRRIWEANHLFRLMLFKGFV--- 284
             C P+  TY ++I+   + G       +    R + +   +  N L   +L +GFV   
Sbjct: 262 SSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMRLSKKASSFTYNPLITGLLARGFVKKV 321

Query: 285 -------------PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
                        P VV YN +I G  ++ +IE A   F +M   G +P+ +TYNS +  
Sbjct: 322 DDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNG 381

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           Y       +A+ +   ++      PT  +Y  +I   C  G + EAR    E+V+ G +P
Sbjct: 382 YCKAGNQKEALLLFGDLRRAGLA-PTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLP 440

Query: 392 REYTYKLV 399
             YTY ++
Sbjct: 441 DVYTYTIL 448



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 106/244 (43%), Gaps = 17/244 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
            LK+M  RG+  L    +   +I  L  +G + EA      M+  + +   + YN +I  
Sbjct: 253 LLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMRLSK-KASSFTYNPLITG 311

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
           L   G   K   L  +ME  G    P V TY  +I    + G           +I  A  
Sbjct: 312 LLARGFVKKVDDLQLEMENEGIM--PTVVTYNAMIHGLLQSG-----------QIEAAQA 358

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
            F  M   G +PDV+ YN L++G CK    + AL LF D+ + G  P  +TYN  I  Y 
Sbjct: 359 KFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYC 418

Query: 334 VVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
            + ++++A  +  +M  +  G +P   +YT ++        +   R+F  E++  G  P 
Sbjct: 419 RLGDLEEARRLKEEM--VEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPD 476

Query: 393 EYTY 396
            + Y
Sbjct: 477 CFAY 480



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 56/139 (40%), Gaps = 13/139 (9%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217
           M    NG      + TCLI    E G + EA   F  M      P    Y V+I+A CR 
Sbjct: 536 MQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRR 595

Query: 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277
           GN   A     +M   G    P+  TY +LI + C+ G           R   A   F  
Sbjct: 596 GNLYSAYGWFRKMLEEGVE--PNEITYNVLIHALCRMG-----------RTQLAYRHFYE 642

Query: 278 MLFKGFVPDVVAYNCLIDG 296
           ML +G VP+   Y  LIDG
Sbjct: 643 MLERGLVPNKYTYTLLIDG 661



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
           F  DM   G      T +V  +I      G +  A   F +M +    P+   YNV+I+A
Sbjct: 569 FFNDMISDGLPPSAVTYTV--IIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHA 626

Query: 214 LCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILI 248
           LCR+G    A R   E +E  G    P+ YTYT+LI
Sbjct: 627 LCRMGRTQLAYRHFYEMLER-GLV--PNKYTYTLLI 659


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 16/242 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
             K+M+ RG      T ++  LI  L + G++ +AL  F +M+    +  VY YN +IN 
Sbjct: 360 LFKEMAGRGLEPNEVTYAI--LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLING 417

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+ G+ ++AR LL  M   G    P   +Y+ LI+  C+ G  + C +           
Sbjct: 418 YCKQGSLDRARGLLSGMVKEGLT--PTAASYSPLIAGLCRNGDLSSCME----------- 464

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L R M  +G   +   +  LI+G CK  +++ A  LFD M     IPN VT+N  I  Y 
Sbjct: 465 LHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYC 524

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           +V  I KA ++  +M  +    P + +Y  +I  LC    V +A +F+A+L +  +V   
Sbjct: 525 LVGNIRKAFQLYDQMVEMGLK-PDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNN 583

Query: 394 YT 395
           ++
Sbjct: 584 FS 585



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 131/273 (47%), Gaps = 18/273 (6%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190
           +E+T + +   F R   ++       DM R G   + + ++ + +I  L ++ LV EA +
Sbjct: 267 DEVTYRTLVYGFCRMEELEMALRITHDMIRLGF--VPSEANCSFMIDELRKKELVEEAFS 324

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
              ++      P+V+AYN +I+ LC+   F+ A  L ++M   G    P+  TY ILI +
Sbjct: 325 LACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLE--PNEVTYAILIHA 382

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF 310
            CK GM           I +A  LF  M  KG    V  YN LI+G CK   ++RA  L 
Sbjct: 383 LCKRGM-----------IEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLL 431

Query: 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALC 369
             M K+G  P   +Y+  I       ++   +E+ R+M     G+  ++ ++T +I+  C
Sbjct: 432 SGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMA--ERGIAWNNYTFTALINGFC 489

Query: 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
           +  ++ EA     +++D   +P E T+ ++ + 
Sbjct: 490 KDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEG 522



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 150/342 (43%), Gaps = 27/342 (7%)

Query: 108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARG--NNVKGLWDFLKDMSRRG-NG 164
           +T G++KA EF   +E  +   +N      +   F  G       LWD   +M+ RG   
Sbjct: 560 LTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWD---EMAVRGVKL 616

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +LV   S T ++    ++    ++   F  MK+   +PD   Y  +I+AL +  N  +A 
Sbjct: 617 DLV---SFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQAL 673

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
              +QM + G+   P+  T+T+LI++ CK G            +  A  L + ML    +
Sbjct: 674 NCWDQMVVDGYS--PNTVTHTVLINNLCKSGY-----------LGSAELLCKEMLAGNVL 720

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+   YNC +D       +E+A +L   M  +G + + V++N  I+      +I +AI++
Sbjct: 721 PNKFTYNCFLDYFATEGDMEKAKDLHSAM-LQGHLASIVSFNILIKGLCKAGKIQEAIDL 779

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           M K+       P   SY+ IIH LC+ G + +A +   E++  G  P    Y +     N
Sbjct: 780 MSKITESGFS-PDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCN 838

Query: 405 AAEEPSLLDDGLRKRIRDGIEYR---FRQVMKVKPIMKHKEL 443
              E           IR G++     +R ++    +M H + 
Sbjct: 839 VHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMLHYDF 880



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 14/212 (6%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           F +M Q     D Y Y   I A C   N + AR L+ +ME  G +       Y +L+   
Sbjct: 186 FDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKA--SAVPYNVLMYGL 243

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK             R+ EA  +  +M+  G   D V Y  L+ G C+   +E AL +  
Sbjct: 244 CK-----------NMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITH 292

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
           DM + G +P+    +  I        +++A  +  K+ +L   VP   +Y  +I  LC+ 
Sbjct: 293 DMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM-VPNVFAYNALIDKLCKN 351

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            R  +A     E+   G  P E TY ++  AL
Sbjct: 352 ERFDDADRLFKEMAGRGLEPNEVTYAILIHAL 383



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 14/199 (7%)

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           Y  + ++ +L ++  F  AR L ++M   G     D Y YT  I +YC+     G R  +
Sbjct: 164 YTASQILFSLVKIRQFALARDLFDKMLQSGVHL--DEYVYTAGIRAYCESRNLDGARGLV 221

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
            R           M  +G     V YN L+ G CK  R++ A+E+ + M   G   + VT
Sbjct: 222 VR-----------MESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVT 270

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y + +  +  + E++ A+ +   M  L   VP+ ++ + +I  L +   V EA     +L
Sbjct: 271 YRTLVYGFCRMEELEMALRITHDMIRLGF-VPSEANCSFMIDELRKKELVEEAFSLACKL 329

Query: 385 VDGGSVPREYTYKLVCDAL 403
            D G VP  + Y  + D L
Sbjct: 330 GDLGMVPNVFAYNALIDKL 348



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           K  +   A +LFD M + G   +   Y + IR Y     +D A  ++ +M++   GV  S
Sbjct: 175 KIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMES--EGVKAS 232

Query: 359 S-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
           +  Y  +++ LC+  RV EA +    +V+ G    E TY+ +       EE
Sbjct: 233 AVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEE 283


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 125/259 (48%), Gaps = 16/259 (6%)

Query: 139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
           G+VF + N +  L  F    +R     +++ S V  +I VLG+EG  + A +  + ++  
Sbjct: 156 GLVFYKKNEL-ALCVFYFVRNREDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRND 214

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
               D+YAY  +I A    G + +A  + +++E  G  C P + TY ++++ Y K GM  
Sbjct: 215 GVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG--CRPTLITYNVILNVYGKMGMP- 271

Query: 259 GCRKAIRRRIW-EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                     W +   L   M   G  PD+  YN LI  C +    E A E+F++M   G
Sbjct: 272 ----------WSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAG 321

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P++VTYN+ +  Y       +A+E++++M+      P+  +Y  +I A    G + EA
Sbjct: 322 FSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFA-PSIVTYNSLISAYARDGLLDEA 380

Query: 378 RDFLAELVDGGSVPREYTY 396
            +  +++V  G  P  +TY
Sbjct: 381 MELKSQMVKKGIKPDVFTY 399



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 17/233 (7%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-N 219
           R +G  +   + T LI      G   EA+  F ++++  CRP +  YNV++N   ++G  
Sbjct: 212 RNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMP 271

Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279
           ++K   L++ M+  G    PD+YTY  LISS         CR+       EA  +F  M 
Sbjct: 272 WSKIAGLVDSMKSSG--VAPDLYTYNTLISS---------CRRGSLYE--EAAEVFEEMK 318

Query: 280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
             GF PD V YN L+D   K+ R   A+E+  +M   G  P+ VTYNS I  Y+    +D
Sbjct: 319 AAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLD 378

Query: 340 KAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
           +A+E+  K Q +  G+ P   +YT ++    + G+   A     E+   G  P
Sbjct: 379 EAMEL--KSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQP 429



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 127/279 (45%), Gaps = 21/279 (7%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
           F  +++T   +  V+ +    +   + LK+M   G    + T     LI     +GL++E
Sbjct: 322 FSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVT--YNSLISAYARDGLLDE 379

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A+    +M +   +PDV+ Y  +++   + G  + A  + E+M + G  C P++ T+  L
Sbjct: 380 AMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAG--CQPNICTFNAL 437

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I  +   G              E   +F  +     VPD+V +N L+    +        
Sbjct: 438 IKMHGNRG-----------NFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVS 486

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
            +F +M + G +P R T+N+ I  YS     D+A+ + R+M  L+ GV P  S+Y  ++ 
Sbjct: 487 GVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRM--LDAGVTPDLSTYNAVLA 544

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           AL   G   ++   LAE+ DG   P E TY   C  L+A
Sbjct: 545 ALARGGLWEQSEKVLAEMKDGRCKPNELTY---CSLLHA 580



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 117/268 (43%), Gaps = 26/268 (9%)

Query: 137 EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196
           +MG+ +++   + GL D     S + +G      +   LI       L  EA   F  MK
Sbjct: 267 KMGMPWSK---IAGLVD-----SMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMK 318

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
                PD   YN +++   +     +A  +L++ME  GF   P + TY  LIS+Y + G+
Sbjct: 319 AAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGF--APSIVTYNSLISAYARDGL 376

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                      + EA  L   M+ KG  PDV  Y  L+ G  KT + + A+++F++M   
Sbjct: 377 -----------LDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVA 425

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN--HGVPTSSSYTPIIHALCEAGRV 374
           GC PN  T+N+ I+ +         +EMM+  + +     VP   ++  ++    + G  
Sbjct: 426 GCQPNICTFNALIKMHGNRGNF---VEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMD 482

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDA 402
            E      E+   G VP   T+  +  A
Sbjct: 483 SEVSGVFKEMKRAGFVPERDTFNTLISA 510



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 121/290 (41%), Gaps = 33/290 (11%)

Query: 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF 192
           +T   +  VF +      +    K+M R G   +    +   LI      G  ++A+A +
Sbjct: 467 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF--VPERDTFNTLISAYSRCGFFDQAMAIY 524

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
            RM      PD+  YN V+ AL R G + ++  +L +M+    RC P+  TY  L+ +Y 
Sbjct: 525 RRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMK--DGRCKPNELTYCSLLHAYA 582

Query: 253 KYGMQTGCRKAIRRRIW-------------------------EANHLFRLMLFKGFVPDV 287
             G +     A+   I+                         E    F  +  +GF PD+
Sbjct: 583 N-GKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDI 641

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
              N ++    +   + +  E+ + +   G  P+  TYNS +  YS     +K+ +++R+
Sbjct: 642 TTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILRE 701

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +  +  G+ P   S+  +I A C  GR+ EA    AE+ D G  P   TY
Sbjct: 702 I--IAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITY 749



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 13/186 (6%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           +++  ++ + G   +V++       +K     P +  YN ++    R  +F K+  +L +
Sbjct: 642 TTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILRE 701

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           +   G +  PD+ ++  +I +YC+ G           R+ EA+ +F  M   G  PDV+ 
Sbjct: 702 IIAKGMK--PDIISFNTVIFAYCRNG-----------RMKEASRIFAEMKDFGLAPDVIT 748

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN  I           A+++   M K  C PN+ TYNS I ++  +N  D+A   +  ++
Sbjct: 749 YNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNLR 808

Query: 350 NLNHGV 355
           NL+  V
Sbjct: 809 NLDPSV 814



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 13/167 (7%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            LIK+ G  G   E +  F  +K   C PD+  +N ++    + G  ++   + ++M+  
Sbjct: 436 ALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 495

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           GF   P+  T+  LIS+Y + G              +A  ++R ML  G  PD+  YN +
Sbjct: 496 GF--VPERDTFNTLISAYSRCGF-----------FDQAMAIYRRMLDAGVTPDLSTYNAV 542

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +    +    E++ ++  +M    C PN +TY S +  Y+   E+++
Sbjct: 543 LAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVER 589


>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 484

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 135/281 (48%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV-T 173
           A +F+ WVER     HN     ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLLEHNREIHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            +I   G+ G+V E++  F +M++      + +Y+ +   + R G +  ++    +M   
Sbjct: 85  MMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ +LI  +   G           ++  AN  F  M  +   PDV+ YN +
Sbjct: 145 GIE--PTRHTFNVLIWGFFLSG-----------KVETANRFFEDMKSREITPDVITYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M ++   P  VTY + I+ Y+ V+ +D A+ ++ +M+ L  
Sbjct: 192 INGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDALRLVEEMKGL-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E+VD    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYVAPTD 290



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 92/250 (36%), Gaps = 58/250 (23%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDV 241
           G V  A   F  MK     PDV  YN +IN   RV    +A ++ LE  E    +  P V
Sbjct: 164 GKVETANRFFEDMKSREITPDVITYNTMINGYNRVKKMEEAEKYFLEMKER---KIDPTV 220

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
            TYT LI  Y               R+ +A  L   M   G  P+ + Y+ L+ G C   
Sbjct: 221 VTYTTLIKGYASVD-----------RVDDALRLVEEMKGLGIKPNAITYSTLLPGLCNAE 269

Query: 302 RIERALELFDDMNKKGCIPNRVT------------------------------------Y 325
           ++  A  +  +M  K   P   +                                    Y
Sbjct: 270 KMSEARSILKEMVDKYVAPTDNSIFMRLISSQCKAGNLDAAADVLKAMIRLSVPTEAGHY 329

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTS------SSYTPIIHALCEAGRVLEAR 378
              I YY    + DKA++++ K+   +  + P S      S+Y P+I  LC  G+  +A 
Sbjct: 330 GVLIEYYCKAGQYDKAVKLLDKLIEKDIILRPQSTLHMELSAYNPLIEYLCNNGQTAKAE 389

Query: 379 DFLAELVDGG 388
             + +L+  G
Sbjct: 390 TLVRQLMKLG 399



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 22/213 (10%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK    +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYASVDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCNAEKMSEARSIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LISS CK G            +  A  + + M+      + 
Sbjct: 279 KEM-VDKYVAPTDNSIFMRLISSQCKAG-----------NLDAAADVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCI--PNRV------TYNSFIRYYSVVNEID 339
             Y  LI+  CK  + ++A++L D + +K  I  P          YN  I Y     +  
Sbjct: 327 GHYGVLIEYYCKAGQYDKAVKLLDKLIEKDIILRPQSTLHMELSAYNPLIEYLCNNGQTA 386

Query: 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
           KA  ++R++  L  GV   +S   +I    + G
Sbjct: 387 KAETLVRQLMKL--GVQDPTSLNTLIRGHSQEG 417


>gi|297842515|ref|XP_002889139.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334980|gb|EFH65398.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 482

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 162/381 (42%), Gaps = 44/381 (11%)

Query: 45  IESVADVLKSIPRFFFQSPR----SIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPA 100
           +  VADV K+I +    SP+    S   Q+G R    + + +L    Y   N     G  
Sbjct: 30  VRDVADVAKNISKVLMSSPQLVIDSALDQSGLRVSPEVVEDVL----YRFRNA----GLL 81

Query: 101 AYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSR 160
           AYR              F+ W E+   + H+      M    A+    K +WD +  M +
Sbjct: 82  AYR--------------FFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMMK 127

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
           +   +++   +   +++       V+EA+  F  M+++   P++ A+N +++ALC+  N 
Sbjct: 128 K---KMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNV 184

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
            KA+ + E M     R  PD  TY+IL+  + K              + +A  +FR M+ 
Sbjct: 185 RKAQEIFENMR---DRFTPDSKTYSILLEGWGK-----------EPNLPKAREVFREMVD 230

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
            G +PD+V Y+ ++D  CK  R++ AL +   M+   C P    Y+  +  Y     +++
Sbjct: 231 AGSLPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTETRLEE 290

Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
           A++   +M+         + +  +I A C+  R+      L E+   G  P   +  ++ 
Sbjct: 291 AVDTFLEMERSGMKADV-AVFNSLIGAFCKTNRMKNVYRVLKEMKSKGVTPNSKSCNIIL 349

Query: 401 DALNAAEEPSLLDDGLRKRIR 421
             L    E     D  RK I+
Sbjct: 350 RHLIDRGEKDEAFDVFRKMIK 370



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 14/162 (8%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           TT   + L+   G E  + EA+ TF  M++   + DV  +N +I A C+         +L
Sbjct: 271 TTFIYSVLVHTYGTETRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKTNRMKNVYRVL 330

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M+  G    P+  +  I++      G +            EA  +FR M+ K   PD 
Sbjct: 331 KEMKSKG--VTPNSKSCNIILRHLIDRGEKD-----------EAFDVFRKMI-KVCEPDA 376

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
             Y  +I   C+   +E A +++  M KKG  P+  T++  I
Sbjct: 377 DTYTMMIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLI 418


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 124/250 (49%), Gaps = 11/250 (4%)

Query: 160 RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
           +RG G +    + T ++    + GL+ +A   F  M++  C P+V  Y  +I+A  +   
Sbjct: 469 KRG-GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKK 527

Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGC----RKAIRRRIWEANHL 274
            + A  L E M   G  C P++ TY+ LI  +CK G ++  C    R    + + + +  
Sbjct: 528 VSYANELFETMLSEG--CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 585

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           F+        P+VV Y  L+DG CK++R+E A +L D M+ +GC PN++ Y++ I     
Sbjct: 586 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 645

Query: 335 VNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           V ++D+A E+  +M    HG P T  +Y+ +I    +  R   A   L+++++    P  
Sbjct: 646 VGKLDEAQEVKTEMS--EHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNV 703

Query: 394 YTYKLVCDAL 403
             Y  + D L
Sbjct: 704 VIYTEMIDGL 713



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 123/256 (48%), Gaps = 30/256 (11%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G +  TS+ + ++  L     +  A   F  MK+     DVY Y +++++ C+ G   
Sbjct: 435 GQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIE 494

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +AR    +M   G  C P+V TYT LI +Y K            +++  AN LF  ML +
Sbjct: 495 QARKWFNEMREVG--CTPNVVTYTALIHAYLK-----------AKKVSYANELFETMLSE 541

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI----------------PNRVTY 325
           G +P++V Y+ LIDG CK  ++E+A ++F+ M     +                PN VTY
Sbjct: 542 GCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTY 601

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            + +  +   + +++A +++  M ++    P    Y  +I  LC+ G++ EA++   E+ 
Sbjct: 602 GALLDGFCKSHRVEEARKLLDAM-SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMS 660

Query: 386 DGGSVPREYTYKLVCD 401
           + G     YTY  + D
Sbjct: 661 EHGFPATLYTYSSLID 676



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 18/233 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EA      M    C P+   Y+ +I+ LC+VG  ++A+ +  +M   GF  P  +YTY
Sbjct: 614 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGF--PATLYTY 671

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           + LI  Y K   Q    K + +           ML     P+VV Y  +IDG CK  + +
Sbjct: 672 SSLIDRYFKVKRQDLASKVLSK-----------MLENSCAPNVVIYTEMIDGLCKVGKTD 720

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A +L   M +KGC PN VTY + I  + ++ +I+  +E++ +M   + GV P   +Y  
Sbjct: 721 EAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG--SKGVAPNYVTYRV 778

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA--EEPSLLDD 414
           +I   C+ G +  A + L E+           Y+ V +  N    E   LLD+
Sbjct: 779 LIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDE 831



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 142/365 (38%), Gaps = 42/365 (11%)

Query: 39  TQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLG 98
           TQ+     ++AD +  +   F +  +   RQ  FR +          E+  I    L+  
Sbjct: 54  TQSSIDARAIADAVTGVDDVFGRKSQKFLRQ--FREKL--------SESLVIEVLRLIAR 103

Query: 99  PAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDM 158
           P+A                F+ W  R   + H       +  +  R ++ K   +FL+ +
Sbjct: 104 PSA-------------VISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQI 150

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
             R + + V    +  L++     G  + AL    R+K FR RP    YN +I A  +  
Sbjct: 151 --RDDDKEVFGQFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKAD 208

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
             + A  +  +M L   R   D +T      S CK G             W       L+
Sbjct: 209 RLDSASLIHREMSLANLRM--DGFTLRCFAYSLCKVGK------------WR--EALTLV 252

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
             + FVPD V Y  LI G C+    E A++  + M    C+PN VTY++ +       ++
Sbjct: 253 ETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQL 312

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
            +   ++  M  +    P+   +  ++HA C +G    A   L ++V  G +P    Y +
Sbjct: 313 GRCKRVLNMMM-MEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNI 371

Query: 399 VCDAL 403
           +  ++
Sbjct: 372 LIGSI 376



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 98/233 (42%), Gaps = 33/233 (14%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC------K 253
           C P    +N +++A C  G+ + A  LL++M   G    P    Y ILI S C       
Sbjct: 327 CYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHM--PGYVVYNILIGSICGDKDSLN 384

Query: 254 YGMQTGCRKAIRRRIW------------------------EANHLFRLMLFKGFVPDVVA 289
           + +     KA    +                         +A  + R M+ +GF+PD   
Sbjct: 385 FDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 444

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y+ +++  C   ++E A  LF++M + G + +  TY   +  +     I++A +   +M+
Sbjct: 445 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 504

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +    P   +YT +IHA  +A +V  A +    ++  G +P   TY  + D 
Sbjct: 505 EVG-CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDG 556



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 114/282 (40%), Gaps = 35/282 (12%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI  L E  L  EA+    RM+   C P+V  Y+ ++          + + +L  M +
Sbjct: 265 TKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMM 324

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL------------------ 274
            G  C P    +  L+ +YC  G  +   K +++ + +  H+                  
Sbjct: 325 EG--CYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMV-KCGHMPGYVVYNILIGSICGDKD 381

Query: 275 -------------FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                        +  ML  G V + +  +      C   + E+A  +  +M  +G IP+
Sbjct: 382 SLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPD 441

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TY+  + Y    ++++ A  +  +M+     V    +YT ++ + C+AG + +AR + 
Sbjct: 442 TSTYSKVLNYLCNASKMELAFLLFEEMKR-GGLVADVYTYTIMVDSFCKAGLIEQARKWF 500

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
            E+ + G  P   TY  +  A   A++ S  ++     + +G
Sbjct: 501 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 542



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 99/240 (41%), Gaps = 30/240 (12%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I  L + G  +EA      M++  C+P+V  Y  +I+    +G       LLE+M  
Sbjct: 707 TEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGS 766

Query: 233 PGFRCPPDVYTYTILISSYCKYGM------------QT-------GCRKAIR---RRIWE 270
            G    P+  TY +LI   CK G             QT       G RK I    +   E
Sbjct: 767 KGV--APNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIE 824

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN--KKGCIPNRVTYNSF 328
           +  L   +      P +  Y  LID   K  R+E AL L +++       +    TYNS 
Sbjct: 825 SLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSL 884

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA---RDFLAELV 385
           I    + N+++ A ++  +M      +P   S+  +I  L    ++ EA    DF++ +V
Sbjct: 885 IESLCLANKVETAFQLFSEMTK-KGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHMV 943


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 29/247 (11%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V++AL  F  M     RPDV+ Y+ +I+ LC  G ++ A  LL  M     +  P+V T+
Sbjct: 256 VDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM--LERKINPNVVTF 313

Query: 245 TILISSYCKYGMQTGCRK------------------------AIRRRIWEANHLFRLMLF 280
             LI ++ K G      K                         +  R+ EA  +F LM+ 
Sbjct: 314 NSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 373

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           K  +PDVV YN LI+G CK  ++   +ELF DM+++G + N VTY + I  +   ++ D 
Sbjct: 374 KDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDN 433

Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
           A  + ++M  ++ GV P   +Y  ++  LC+ G++ +A      L      P  YTY ++
Sbjct: 434 AQMVFKQM--VSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIM 491

Query: 400 CDALNAA 406
            + +  A
Sbjct: 492 SEGMCKA 498



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 129/261 (49%), Gaps = 17/261 (6%)

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +LVT  +V   I  L + G  + AL    +M++ +   DV  Y+ VI++LC+  + + A 
Sbjct: 204 DLVTYGAV---INGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDAL 260

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
            L  +M+  G R  PDV+TY+ LIS  C YG           R  +A+ L   ML +   
Sbjct: 261 NLFTEMDNKGIR--PDVFTYSSLISCLCNYG-----------RWSDASRLLSDMLERKIN 307

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+VV +N LID   K  ++  A +LFD+M ++   PN VTYNS I  + + + +D+A ++
Sbjct: 308 PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQI 367

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
              M +    +P   +Y  +I+  C+A +V++  +   ++   G V    TY  +     
Sbjct: 368 FTLMVS-KDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFF 426

Query: 405 AAEEPSLLDDGLRKRIRDGIE 425
            A +        ++ + DG+ 
Sbjct: 427 QASDCDNAQMVFKQMVSDGVH 447



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 124/284 (43%), Gaps = 27/284 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F  GN +      +  M   G      T + T L+  L +    +EA+A   RM    C+
Sbjct: 145 FCHGNRISEAVALVDQMVEMGYQP--DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQ 202

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD+  Y  VIN LC+ G  + A  LL +ME    +   DV  Y+ +I S CKY       
Sbjct: 203 PDLVTYGAVINGLCKRGEPDLALNLLNKMEKG--KIEADVVIYSTVIDSLCKY------- 253

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
               R + +A +LF  M  KG  PDV  Y+ LI   C   R   A  L  DM ++   PN
Sbjct: 254 ----RHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPN 309

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
            VT+NS I  ++   ++ +A ++  +M   +   P   +Y  +I+  C   R+ EA+   
Sbjct: 310 VVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID-PNIVTYNSLINGFCMHDRLDEAQQIF 368

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
             +V    +P   TY  + +    A           K++ DG+E
Sbjct: 369 TLMVSKDCLPDVVTYNTLINGFCKA-----------KKVVDGME 401



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 17/210 (8%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           F +   V    +  +DMSRRG   LV  T + T LI    +    + A   F +M     
Sbjct: 390 FCKAKKVVDGMELFRDMSRRG---LVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
            P++  YN +++ LC+ G   KA  + E ++    +  PD+YTY I+    CK G     
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKS--KMEPDIYTYNIMSEGMCKAG----- 499

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 ++ +   LF  +  KG  PDV+AYN +I G CK    E A  LF  M + G +P
Sbjct: 500 ------KVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLP 553

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           +  TYN+ IR +    +   + E++++M++
Sbjct: 554 DSGTYNTLIRAHLRDGDKAASAELIKEMRS 583



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 18/231 (7%)

Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           +M+      ++Y YN++IN LCR    + A  +L +M   G+   P + T   L++ +C 
Sbjct: 90  KMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGY--GPSIVTLNSLLNGFCH 147

Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
                        RI EA  L   M+  G+ PD V +  L+ G  +  +   A+ L + M
Sbjct: 148 -----------GNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM 196

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
             KGC P+ VTY + I       E D A+ ++ KM+           Y+ +I +LC+   
Sbjct: 197 VVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEK-GKIEADVVIYSTVIDSLCKYRH 255

Query: 374 VLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRI 420
           V +A +   E+ + G  P  +TY      +C+    ++   LL D L ++I
Sbjct: 256 VDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKI 306



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 1/144 (0%)

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
           G   ++  YN +I+  C+  ++  AL +   M K G  P+ VT NS +  +   N I +A
Sbjct: 95  GVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEA 154

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           + ++ +M  + +  P + ++T ++H L +  +  EA   +  +V  G  P   TY  V +
Sbjct: 155 VALVDQMVEMGYQ-PDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVIN 213

Query: 402 ALNAAEEPSLLDDGLRKRIRDGIE 425
            L    EP L  + L K  +  IE
Sbjct: 214 GLCKRGEPDLALNLLNKMEKGKIE 237


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 16/242 (6%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M     +PDVY Y+++IN LC+ G  ++A  L  +M   G    P+  
Sbjct: 185 GDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK             ++  A  +++ ML +G  PD++ YN LI G CK   
Sbjct: 243 TFTTLIHGHCK-----------NEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGE 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SY 361
           +++  +L D+M   G  P++++Y + I       +++ A+E+  KM  +   +     +Y
Sbjct: 292 LKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKM--IQESIRLDDVAY 349

Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
           T +I  LC  GR  +A   L E++  G  P   TY ++ +      +       LR+  R
Sbjct: 350 TALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQR 409

Query: 422 DG 423
           DG
Sbjct: 410 DG 411



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 101/200 (50%), Gaps = 16/200 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++   C+ G    A+ + + +   G R  P V ++  LI+ Y K G        
Sbjct: 136 LYFFNILMQRFCKEGEMRLAQSVFDAITKWGLR--PSVVSFNTLINGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   M   G  PDV  Y+ LI+G CK  +++ A ELF++M   G +PN V
Sbjct: 186 ---DLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGV 242

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
           T+ + I  +    ++D A+E+ ++M  L+ G+ P   +Y  +I+ LC+ G + +  D + 
Sbjct: 243 TFTTLIHGHCKNEKVDLAMEIYKQM--LSQGLSPDLITYNTLIYGLCKKGELKQVHDLID 300

Query: 383 ELVDGGSVPREYTYKLVCDA 402
           E++  G  P + +Y  + D 
Sbjct: 301 EMIMNGLKPDKISYTTLIDG 320



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 104/245 (42%), Gaps = 14/245 (5%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           E G V +A+  F   KQ + R        V+  L     F       +++   G+  P  
Sbjct: 78  ESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGY--PAS 135

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           +Y + IL+  +CK G            +  A  +F  +   G  P VV++N LI+G  K 
Sbjct: 136 LYFFNILMQRFCKEG-----------EMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKL 184

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
             ++    L   M+  G  P+  TY+  I       ++D+A E+  +M + N  VP   +
Sbjct: 185 GDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLD-NGLVPNGVT 243

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
           +T +IH  C+  +V  A +   +++  G  P   TY  +   L    E   + D + + I
Sbjct: 244 FTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMI 303

Query: 421 RDGIE 425
            +G++
Sbjct: 304 MNGLK 308



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 13/187 (6%)

Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
           NG +    + T LI    +   V+ A+  + +M      PD+  YN +I  LC+ G   +
Sbjct: 235 NGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQ 294

Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
              L+++M + G +  PD  +YT LI   CK G      +   + I E+  L        
Sbjct: 295 VHDLIDEMIMNGLK--PDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRL-------- 344

Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
              D VAY  LI   C+  R   A ++  +M   G  P+  TY   I  +    +   A 
Sbjct: 345 ---DDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTAS 401

Query: 343 EMMRKMQ 349
           +++R+MQ
Sbjct: 402 KLLREMQ 408



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 15/148 (10%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +   +K + D + +M    NG      S T LI    +EG +  AL    +M Q   R
Sbjct: 286 LCKKGELKQVHDLIDEMIM--NGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIR 343

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            D  AY  +I+ LCR G  + A  +L +M   G +  PD  TYT++I+ +CK        
Sbjct: 344 LDDVAYTALISCLCREGRASDAEKMLREMLSVGLK--PDNGTYTMIINEFCK-------- 393

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVA 289
              +R    A+ L R M   G +P VV 
Sbjct: 394 ---KRDSKTASKLLREMQRDGPLPGVVT 418


>gi|449446161|ref|XP_004140840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 127/280 (45%), Gaps = 16/280 (5%)

Query: 117 EFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLI 176
           +F+ W  R  ++ H   +   +  +FA     K +W  L +M+ +G    VT  +   LI
Sbjct: 136 KFFIWSGRIENYRHTVNSYHIIMKIFAECEEFKAMWRVLDEMTEKGYP--VTARTFMILI 193

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
              GE GL    +  F + K F  RP  ++YN +++ L  V  +    ++ +QM L    
Sbjct: 194 CTCGEAGLAKRVVERFIKSKTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDH- 252

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
             PD+ TY +L+ S CK G           ++ + + L   M  KGF PD   YN L+  
Sbjct: 253 -SPDILTYNVLLFSSCKLG-----------KLDQFHRLLDEMARKGFSPDFHTYNILLYV 300

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
             K  +   AL L + M + G  PN + + + I   S    +D       ++ N N  +P
Sbjct: 301 LGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRAGNLDACKYFFDELGN-NGCIP 359

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
               YT +I +  EAG+  +AR F  E++  G +P  +TY
Sbjct: 360 DVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQLPNVFTY 399



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 4/141 (2%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           +R  N+     F  ++    NG +      T +I    E G   +A A F  M      P
Sbjct: 337 SRAGNLDACKYFFDELGN--NGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQLP 394

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           +V+ YN +I   C VG F +A  +L +ME  G  C P+   Y+ L+S     G      K
Sbjct: 395 NVFTYNSMIRGFCMVGKFKEAYSMLSEMESRG--CRPNFLVYSTLVSYLRNAGKLGEAHK 452

Query: 263 AIRRRIWEANHLFRLMLFKGF 283
            I++ +    +   +  FKG+
Sbjct: 453 VIKQMVENGQYAHLMTKFKGY 473


>gi|255660932|gb|ACU25635.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 484

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 134/281 (47%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFQHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDMWV 84

Query: 175 L-IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L I   G  G+V E++  F +M +      + +Y+ +   + R G +  A+    +M   
Sbjct: 85  LMIDSYGNGGIVQESVKLFQKMDELGVERTIKSYDALFKVISRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ I+I  +   G           ++  AN  F  M  +   PDV+ YN +
Sbjct: 145 GIE--PTRHTFNIMIWGFFLSG-----------KVETANRFFEDMKNREITPDVITYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+   +
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMK--GY 249

Query: 354 GVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+  ++ +Y+ ++  LC A ++ EAR  L E+VD    P +
Sbjct: 250 GIKANAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTD 290


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 124/250 (49%), Gaps = 11/250 (4%)

Query: 160 RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
           +RG G +    + T ++    + GL+ +A   F  M++  C P+V  Y  +I+A  +   
Sbjct: 510 KRG-GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKK 568

Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGC----RKAIRRRIWEANHL 274
            + A  L E M   G  C P++ TY+ LI  +CK G ++  C    R    + + + +  
Sbjct: 569 VSYANELFETMLSEG--CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 626

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
           F+        P+VV Y  L+DG CK++R+E A +L D M+ +GC PN++ Y++ I     
Sbjct: 627 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686

Query: 335 VNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           V ++D+A E+  +M    HG P T  +Y+ +I    +  R   A   L+++++    P  
Sbjct: 687 VGKLDEAQEVKTEMS--EHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNV 744

Query: 394 YTYKLVCDAL 403
             Y  + D L
Sbjct: 745 VIYTEMIDGL 754



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 123/256 (48%), Gaps = 30/256 (11%)

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
           G G +  TS+ + ++  L     +  A   F  MK+     DVY Y +++++ C+ G   
Sbjct: 476 GQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIE 535

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           +AR    +M   G  C P+V TYT LI +Y K            +++  AN LF  ML +
Sbjct: 536 QARKWFNEMREVG--CTPNVVTYTALIHAYLK-----------AKKVSYANELFETMLSE 582

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI----------------PNRVTY 325
           G +P++V Y+ LIDG CK  ++E+A ++F+ M     +                PN VTY
Sbjct: 583 GCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTY 642

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            + +  +   + +++A +++  M ++    P    Y  +I  LC+ G++ EA++   E+ 
Sbjct: 643 GALLDGFCKSHRVEEARKLLDAM-SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMS 701

Query: 386 DGGSVPREYTYKLVCD 401
           + G     YTY  + D
Sbjct: 702 EHGFPATLYTYSSLID 717



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 18/233 (7%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           V EA      M    C P+   Y+ +I+ LC+VG  ++A+ +  +M   GF  P  +YTY
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGF--PATLYTY 712

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
           + LI  Y K   Q    K + +           ML     P+VV Y  +IDG CK  + +
Sbjct: 713 SSLIDRYFKVKRQDLASKVLSK-----------MLENSCAPNVVIYTEMIDGLCKVGKTD 761

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
            A +L   M +KGC PN VTY + I  + ++ +I+  +E++ +M   + GV P   +Y  
Sbjct: 762 EAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG--SKGVAPNYVTYRV 819

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA--EEPSLLDD 414
           +I   C+ G +  A + L E+           Y+ V +  N    E   LLD+
Sbjct: 820 LIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDE 872



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 150/382 (39%), Gaps = 54/382 (14%)

Query: 39  TQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLG 98
           TQ+     ++AD +  +   F +  +   RQ  FR +          E+  I    L+  
Sbjct: 95  TQSSIDARAIADAVSGVDDVFGRKSQKFLRQ--FREKL--------SESLVIEVLRLIAR 144

Query: 99  PAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDM 158
           P+A                F+ W  R   + H       +  +  R ++ K   +FL+ +
Sbjct: 145 PSA-------------VISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQI 191

Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
             R + + V    +  L++     G  + AL    R+K FR RP    YN +I A  +  
Sbjct: 192 --RDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKAD 249

Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
             + A  +  +M L   R   D +T      S CK G     R+A+            L+
Sbjct: 250 RLDSASLIHREMSLANLRM--DGFTLRCFAYSLCKVGKW---REALT-----------LV 293

Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
             + FVPD V Y  LI G C+    E A++  + M    C+PN VTY++ +       ++
Sbjct: 294 ETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQL 353

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
            +   ++  M  +    P+   +  ++HA C +G    A   L ++V  G +P    Y +
Sbjct: 354 GRCKRVLNMMM-MEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNI 412

Query: 399 V------------CDALNAAEE 408
           +            CD L+ AE+
Sbjct: 413 LIGSICGDKDSLNCDLLDLAEK 434



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 33/233 (14%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C P    +N +++A C  G+ + A  LL++M   G    P    Y ILI S C       
Sbjct: 368 CYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHM--PGYVVYNILIGSICGDKDSLN 425

Query: 260 C------RKAIRRRIW------------------------EANHLFRLMLFKGFVPDVVA 289
           C       KA    +                         +A  + R M+ +GF+PD   
Sbjct: 426 CDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           Y+ +++  C   ++E A  LF++M + G + +  TY   +  +     I++A +   +M+
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545

Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            +    P   +YT +IHA  +A +V  A +    ++  G +P   TY  + D 
Sbjct: 546 EVG-CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDG 597



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 114/282 (40%), Gaps = 35/282 (12%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI  L E  L  EA+    RM+   C P+V  Y+ ++          + + +L  M +
Sbjct: 306 TKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMM 365

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL------------------ 274
            G  C P    +  L+ +YC  G  +   K +++ + +  H+                  
Sbjct: 366 EG--CYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMV-KCGHMPGYVVYNILIGSICGDKD 422

Query: 275 -------------FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                        +  ML  G V + +  +      C   + E+A  +  +M  +G IP+
Sbjct: 423 SLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPD 482

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TY+  + Y    ++++ A  +  +M+     V    +YT ++ + C+AG + +AR + 
Sbjct: 483 TSTYSKVLNYLCNASKMELAFLLFEEMKR-GGLVADVYTYTIMVDSFCKAGLIEQARKWF 541

Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
            E+ + G  P   TY  +  A   A++ S  ++     + +G
Sbjct: 542 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 96/239 (40%), Gaps = 30/239 (12%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T +I  L + G  +EA      M++  C+P+V  Y  +I+    +G       LLE+M  
Sbjct: 748 TEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGS 807

Query: 233 PGFRCPPDVYTYTILISSYCKYGM-------------------QTGCRKAIR---RRIWE 270
            G    P+  TY +LI   CK G                      G RK I    +   E
Sbjct: 808 KGV--APNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIE 865

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN--KKGCIPNRVTYNSF 328
           +  L   +      P +  Y  LID   K  R+E AL L +++       +    TYNS 
Sbjct: 866 SLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSL 925

Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA---RDFLAEL 384
           I    + N+++ A ++  +M      +P   S+  +I  L    ++ EA    DF++ +
Sbjct: 926 IESLCLANKVETAFQLFSEMTK-KGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHM 983


>gi|255660910|gb|ACU25624.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 484

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 131/280 (46%), Gaps = 18/280 (6%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G            
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKGLE--WDEDMWVM 85

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           +I   G++G+V E++  F +M++      + +Y+ +   + R G +  A+    +M   G
Sbjct: 86  MIDSYGKQGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEG 145

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P   T+ +LI  +   G           ++  AN  F  M  +   PDVV YN +I
Sbjct: 146 IE--PTRXTFXVLIWGFFLSG-----------KVETANRFFEDMKSREISPDVVTYNTMI 192

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
           +G  +  + E A + F +M  +   P  VTY + I+ Y  V+++D A+ ++ +M+    G
Sbjct: 193 NGYYRVKKXEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGF--G 250

Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           + P +  Y+ ++  LC A ++ EAR  L E++D    P +
Sbjct: 251 IKPNAIXYSTLLPGLCNAEKMSEARSILKEMMDKYLAPTD 290



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 40/221 (18%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T  + T LIK       V++AL     MK F  +P+   Y+ ++  LC     ++AR +L
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIXYSTLLPGLCNAEKMSEARSIL 278

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++M +  +  P D   +  LI+S CK G            +  A+ + + M+      + 
Sbjct: 279 KEM-MDKYLAPTDNSIFMRLITSQCKSG-----------NLDAASDVLKAMIRLSVPTEA 326

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
             Y  LI+  CK  + ++A++L D + +K  I                         +R 
Sbjct: 327 GHYGVLIENFCKAGQYDQAVKLLDKLIEKDII-------------------------LRP 361

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
              L H  P  S+Y P+I  LC  G+  +A   + +L+  G
Sbjct: 362 QSTL-HLEP--SAYNPMIEYLCNNGQAAKAETLVRQLLKWG 399


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 162/355 (45%), Gaps = 34/355 (9%)

Query: 62  SPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLV-LGPAAYRDPQK----VTLGLNKAT 116
           +P +  RQ  F + TP  +R L  +A     NVL+ + P+   +  K    V   +N+ T
Sbjct: 18  TPATTLRQLLFTNFTPSPKRRLLLQARAAKPNVLIPINPSVTVEKGKYSYDVETLINRLT 77

Query: 117 EF--YHWVERFFDFFHNEMTCKEMGIVF----ARGNNVKGLWDFLKDMSRR---GNGELV 167
                  + R  D F N+++  +  +VF     RG+  + L  F K M R+      E +
Sbjct: 78  ALPPRGSIARCLDPFKNKLSLNDFALVFKEFAQRGDWQRSLRLF-KYMQRQIWCKPNEHI 136

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
            T     +I +LG EGL+++    F  M        VY+Y  +INA  R G F+ +  LL
Sbjct: 137 HT----IMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELL 192

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN-HLFRLMLFKGFVPD 286
             M+    R  P + TY  +I++  + G+            WE    LF  M  +G  PD
Sbjct: 193 NGMKQE--RVSPSILTYNTVINACARGGLD-----------WEGLLGLFAEMRHEGIQPD 239

Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
           V+ YN L+  C      + A  +F  MN+ G +P+  TY+  ++ +  +N ++K  E++R
Sbjct: 240 VITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLR 299

Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           +M+     +P  +SY  ++ A  E G + EA     ++   G V    TY ++ +
Sbjct: 300 EME-CGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLN 353



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 132/337 (39%), Gaps = 50/337 (14%)

Query: 104 DPQKVTLGLNK-ATEFYHWVER--------FFDFFHNEMTCKE-------MGIVFARGNN 147
           DP K  L LN  A  F  + +R         F +   ++ CK        M  +  R   
Sbjct: 90  DPFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGR--- 146

Query: 148 VKGLWDFLKDM--SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
            +GL D  +++      NG + T  S T +I   G  G  + +L     MKQ R  P + 
Sbjct: 147 -EGLLDKCREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSIL 205

Query: 206 AYNVVINALCRVG-NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
            YN VINA  R G ++     L  +M   G +  PDV TY  L+ +    G+        
Sbjct: 206 TYNTVINACARGGLDWEGLLGLFAEMRHEGIQ--PDVITYNTLLGACAHRGLGDEAEMVF 263

Query: 265 R------------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           R                         R+ + + L R M   G +PD+ +YN L++   + 
Sbjct: 264 RTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAEL 323

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
             I+ A+ +F  M   GC+ N  TY+  +  Y      D   ++  +M+ +++  P + +
Sbjct: 324 GSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMK-VSNTDPDAGT 382

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
           Y  +I    E G   E      ++ +    P   TY+
Sbjct: 383 YNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYE 419



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 114/263 (43%), Gaps = 16/263 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
            F + N ++ + + L++M   GN  L   +S   L++   E G + EA+  F +M+   C
Sbjct: 284 TFGKLNRLEKVSELLREMECGGN--LPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGC 341

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
             +   Y+V++N   + G ++  R L  +M++      PD  TY ILI  + + G     
Sbjct: 342 VANAATYSVLLNLYGKHGRYDDVRDLFLEMKVS--NTDPDAGTYNILIQVFGEGGY---- 395

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                    E   LF  M  +   P++  Y  LI  C K    E A ++   MN+KG +P
Sbjct: 396 -------FKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVP 448

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           +   Y   I  +      ++A+ M   M  +    PT  +Y  +IHA    G   EA   
Sbjct: 449 SSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSN-PTVETYNSLIHAFARGGLYKEAEAI 507

Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
           L+ + + G     +++  V +A 
Sbjct: 508 LSRMNESGLKRDVHSFNGVIEAF 530



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 104/254 (40%), Gaps = 22/254 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           LI+V GE G   E +  F+ M +    P++  Y  +I A  + G +  A+ +L  M   G
Sbjct: 386 LIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKG 445

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P    YT +I ++ +  +             EA  +F  M   G  P V  YN LI
Sbjct: 446 --VVPSSKAYTGVIEAFGQAALYE-----------EALVMFNTMNEVGSNPTVETYNSLI 492

Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
               +    + A  +   MN+ G   +  ++N  I  +    + ++A++   +M+  N  
Sbjct: 493 HAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANC- 551

Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC------DALNAAEE 408
            P   +   ++   C AG V E  +   E+   G +P    Y ++       D LN A  
Sbjct: 552 EPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYAKNDRLNDAY- 610

Query: 409 PSLLDDGLRKRIRD 422
            +L+D  +  R+ D
Sbjct: 611 -NLIDAMITMRVSD 623



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 17/212 (8%)

Query: 139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS--VTCLIKVLGEEGLVNEALATFYRMK 196
           G++FA G    GL++  K +    N + V  SS   T +I+  G+  L  EAL  F  M 
Sbjct: 420 GLIFACGKG--GLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMN 477

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
           +    P V  YN +I+A  R G + +A  +L +M   G +   DV+++  +I ++ + G 
Sbjct: 478 EVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLK--RDVHSFNGVIEAFRQGG- 534

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                     +  EA   +  M      P+ +    ++   C    ++   E F ++   
Sbjct: 535 ----------QYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKAS 584

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
           G +P+ + Y   +  Y+  + ++ A  ++  M
Sbjct: 585 GILPSVMCYCMMLALYAKNDRLNDAYNLIDAM 616


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 122/235 (51%), Gaps = 18/235 (7%)

Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
           + L++M  +G    + T ++  ++K L  EG + EAL     M +    PDV  YN +I+
Sbjct: 372 NLLEEMRDKGVKSSLVTHNI--VVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLID 429

Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
           A C+  N  KA  L+++M   G +   D +T   L+ + CK            +R  EA 
Sbjct: 430 AYCKARNVAKAFVLMDEMVRSGLKM--DTFTLNTLLYNLCK-----------EKRYEEAE 476

Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
            L R    +GFVPD V+Y  ++    K  + E AL L+D+M+K+   P+  TYN+ I+  
Sbjct: 477 ELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGL 536

Query: 333 SVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
             + ++ +AI+ + ++  +  G VP  ++Y  IIHA C+ G + +A  F  ++++
Sbjct: 537 CTIGKLTEAIDKLNEL--MKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLE 589



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 21/253 (8%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           L+     +G + +AL+T   M+ F   PDV  YN ++ A CR G   +AR LL +M+  G
Sbjct: 216 LVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEG 275

Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
               P   TY  L+S+Y + G            I +A ++   M   GF PD+  YN L 
Sbjct: 276 I--APTRATYNTLVSAYARLGW-----------IKQATNVVEAMTAFGFEPDLWTYNVLA 322

Query: 295 DGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
            G C+  +++ A +L D+M     + P+ VTYN+ +           A+ ++ +M+  + 
Sbjct: 323 AGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMR--DK 380

Query: 354 GVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEE 408
           GV +S  ++  ++  LC  G++ EA   L  + + G  P   TY  +    C A N A+ 
Sbjct: 381 GVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKA 440

Query: 409 PSLLDDGLRKRIR 421
             L+D+ +R  ++
Sbjct: 441 FVLMDEMVRSGLK 453



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 129/291 (44%), Gaps = 24/291 (8%)

Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
           T ++   L+      G + +A      M  F   PD++ YNV+   LC+ G  ++A  L 
Sbjct: 279 TRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLK 338

Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
           ++ME       PDV TY  L+ +  KY           +R  +A +L   M  KG    +
Sbjct: 339 DEMEHLSI-VSPDVVTYNTLVDACFKY-----------QRSSDALNLLEEMRDKGVKSSL 386

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
           V +N ++ G C+  ++E AL     M ++G  P+ +TYN+ I  Y     + KA  +M +
Sbjct: 387 VTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDE 446

Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL--NA 405
           M      + T +  T +++ LC+  R  EA + L      G VP E +Y  V  A     
Sbjct: 447 MVRSGLKMDTFTLNT-LLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKEN 505

Query: 406 AEEPSL-LDDGLRKRIRDGIEYRFRQVMK--------VKPIMKHKELLKCG 447
             EP+L L D + KR      Y +  ++K         + I K  EL+K G
Sbjct: 506 KPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKG 556



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 112/267 (41%), Gaps = 57/267 (21%)

Query: 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           LWD   +MS+R     + T +   LIK L   G + EA+     + +    PD   YN++
Sbjct: 513 LWD---EMSKRKLTPSIYTYNT--LIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNII 567

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           I+A C+ G+  KA     +M    F+  PDV T   L++  C +G           ++ +
Sbjct: 568 IHAYCKEGDLEKAFQFHNKMLENYFK--PDVVTCNTLMNGLCLHG-----------KLEK 614

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  LF     KG   DV+ YN LI   CK   ++ AL  F DM  +G  P+  TYN    
Sbjct: 615 AIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNV--- 671

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
                                            ++ AL EAGR  EA++ L +L + G +
Sbjct: 672 ---------------------------------VLSALSEAGRSEEAQNMLHKLDESGKL 698

Query: 391 PREYTYKLV---CDALNAAEEPSLLDD 414
              ++Y L+    + +   ++P +  D
Sbjct: 699 SERFSYPLIKSSAEEVKTGKDPEVKSD 725



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 13/216 (6%)

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           +L  F  +   R  P+ Y +N++++  C  G    A   L  M+  GF   PDV TY  L
Sbjct: 194 SLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQ--GFGLSPDVVTYNTL 251

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           + ++C+ GM           + EA  L   M  +G  P    YN L+    +   I++A 
Sbjct: 252 LKAHCRKGM-----------LGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQAT 300

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
            + + M   G  P+  TYN          ++D+A ++  +M++L+   P   +Y  ++ A
Sbjct: 301 NVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDA 360

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +  R  +A + L E+ D G      T+ +V   L
Sbjct: 361 CFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGL 396


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 125/259 (48%), Gaps = 16/259 (6%)

Query: 139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198
           G+VF + N +  L  F    +R     +++ S V  +I VLG+EG  + A +  + ++  
Sbjct: 156 GLVFYKKNEL-ALCVFYFVRNREDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRND 214

Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
               D+YAY  +I A    G + +A  + +++E  G  C P + TY ++++ Y K GM  
Sbjct: 215 GVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG--CRPTLITYNVILNVYGKMGMP- 271

Query: 259 GCRKAIRRRIW-EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
                     W +   L   M   G  PD+  YN LI  C +    E A E+F++M   G
Sbjct: 272 ----------WSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAG 321

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
             P++VTYN+ +  Y       +A+E++++M+      P+  +Y  +I A    G + EA
Sbjct: 322 FSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFA-PSIVTYNSLISAYARDGLLDEA 380

Query: 378 RDFLAELVDGGSVPREYTY 396
            +  +++V  G  P  +TY
Sbjct: 381 MELKSQMVKKGIKPDVFTY 399



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 115/238 (48%), Gaps = 17/238 (7%)

Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-N 219
           R +G  +   + T LI      G   EA+  F ++++  CRP +  YNV++N   ++G  
Sbjct: 212 RNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMP 271

Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279
           ++K   L++ M+  G    PD+YTY  LISS         CR+       EA  +F  M 
Sbjct: 272 WSKIAGLVDSMKSSG--VAPDLYTYNTLISS---------CRRGSLYE--EAAEVFEEMK 318

Query: 280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEID 339
             GF PD V YN L+D   K+ R   A+E+  +M   G  P+ VTYNS I  Y+    +D
Sbjct: 319 AAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLD 378

Query: 340 KAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +A+E+  K Q +  G+ P   +YT ++    + G+   A     E+   G  P   T+
Sbjct: 379 EAMEL--KSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTF 434



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 127/279 (45%), Gaps = 21/279 (7%)

Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
           F  +++T   +  V+ +    +   + LK+M   G    + T     LI     +GL++E
Sbjct: 322 FSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVT--YNSLISAYARDGLLDE 379

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           A+    +M +   +PDV+ Y  +++   + G  + A  + E+M + G  C P++ T+  L
Sbjct: 380 AMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAG--CQPNICTFNAL 437

Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
           I  +   G              E   +F  +     VPD+V +N L+    +        
Sbjct: 438 IKMHGNRG-----------NFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVS 486

Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
            +F +M + G +P R T+N+ I  YS     D+A+ + R+M  L+ GV P  S+Y  ++ 
Sbjct: 487 GVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRM--LDAGVTPDLSTYNAVLA 544

Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
           AL   G   ++   LAE+ DG   P E TY   C  L+A
Sbjct: 545 ALARGGLWEQSEKVLAEMKDGRCKPNELTY---CSLLHA 580



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 117/268 (43%), Gaps = 26/268 (9%)

Query: 137 EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196
           +MG+ +++   + GL D     S + +G      +   LI       L  EA   F  MK
Sbjct: 267 KMGMPWSK---IAGLVD-----SMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMK 318

Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
                PD   YN +++   +     +A  +L++ME  GF   P + TY  LIS+Y + G+
Sbjct: 319 AAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGF--APSIVTYNSLISAYARDGL 376

Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                      + EA  L   M+ KG  PDV  Y  L+ G  KT + + A+++F++M   
Sbjct: 377 -----------LDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVA 425

Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN--HGVPTSSSYTPIIHALCEAGRV 374
           GC PN  T+N+ I+ +         +EMM+  + +     VP   ++  ++    + G  
Sbjct: 426 GCQPNICTFNALIKMHGNRGNF---VEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMD 482

Query: 375 LEARDFLAELVDGGSVPREYTYKLVCDA 402
            E      E+   G VP   T+  +  A
Sbjct: 483 SEVSGVFKEMKRAGFVPERDTFNTLISA 510



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 121/290 (41%), Gaps = 33/290 (11%)

Query: 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF 192
           +T   +  VF +      +    K+M R G   +    +   LI      G  ++A+A +
Sbjct: 467 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF--VPERDTFNTLISAYSRCGFFDQAMAIY 524

Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
            RM      PD+  YN V+ AL R G + ++  +L +M+    RC P+  TY  L+ +Y 
Sbjct: 525 RRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMK--DGRCKPNELTYCSLLHAYA 582

Query: 253 KYGMQTGCRKAIRRRIW-------------------------EANHLFRLMLFKGFVPDV 287
             G +     A+   I+                         E    F  +  +GF PD+
Sbjct: 583 N-GKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDI 641

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
              N ++    +   + +  E+ + +   G  P+  TYNS +  YS     +K+ +++R+
Sbjct: 642 TTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILRE 701

Query: 348 MQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           +  +  G+ P   S+  +I A C  GR+ EA    AE+ D G  P   TY
Sbjct: 702 I--IAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITY 749



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 13/186 (6%)

Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
           +++  ++ + G   +V++       +K     P +  YN ++    R  +F K+  +L +
Sbjct: 642 TTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILRE 701

Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
           +   G +  PD+ ++  +I +YC+ G           R+ EA+ +F  M   G  PDV+ 
Sbjct: 702 IIAKGMK--PDIISFNTVIFAYCRNG-----------RMKEASRIFAEMKDFGLAPDVIT 748

Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           YN  I           A+++   M K GC PN+ TYNS I ++  +N  D+A   +  ++
Sbjct: 749 YNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLR 808

Query: 350 NLNHGV 355
           NL+  V
Sbjct: 809 NLDPSV 814



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 13/167 (7%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
            LIK+ G  G   E +  F  +K   C PD+  +N ++    + G  ++   + ++M+  
Sbjct: 436 ALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 495

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           GF   P+  T+  LIS+Y + G              +A  ++R ML  G  PD+  YN +
Sbjct: 496 GF--VPERDTFNTLISAYSRCGF-----------FDQAMAIYRRMLDAGVTPDLSTYNAV 542

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
           +    +    E++ ++  +M    C PN +TY S +  Y+   E+++
Sbjct: 543 LAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVER 589


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 112/232 (48%), Gaps = 16/232 (6%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI      G+++EAL     M +  C  DV  YN ++N LC+    ++A  L  +M  
Sbjct: 537 TILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTE 596

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G    PD YT+T LI+ Y K G            + +A  LF +M+ +   PDVV YN 
Sbjct: 597 RGVF--PDFYTFTTLINGYXKDG-----------NMNKAVTLFEMMIQRNLKPDVVTYNT 643

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LIDG CK   +E+  EL++DM  +   PN ++Y   I  Y  +  + +A  +  +M  + 
Sbjct: 644 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEM--VE 701

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            G   T  +   I+   C AG  ++A +FL+ ++  G VP   TY  + +  
Sbjct: 702 KGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGF 753



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 16/252 (6%)

Query: 152 WDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
           W+  +++ R  +G  V   ++  +I  L +   +    +    M++    PDV  YN +I
Sbjct: 343 WEIYQEVVR--SGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 400

Query: 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
           NA CR G   +A  L++ M   G +  P V+TY  +I+  CK G      K +R     A
Sbjct: 401 NAYCRQGLLEEAFELMDSMSGKGLK--PCVFTYNAIINGLCKTG------KYLR-----A 447

Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
             +   ML  G  PD   YN L+  CC+   +  A  +FD+M  +G +P+ V++++ I  
Sbjct: 448 KGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGL 507

Query: 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
            S    +D+A++  R M+N     P +  YT +I   C  G + EA     E+++ G   
Sbjct: 508 LSKNGCLDQALKYFRDMKNAGLA-PDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXL 566

Query: 392 REYTYKLVCDAL 403
              TY  + + L
Sbjct: 567 DVVTYNTILNGL 578



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 14/226 (6%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    ++G +N+A+  F  M Q   +PDV  YN +I+  C+     K   L   M
Sbjct: 605 TFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM 664

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
                R  P+  +Y ILI+ YC  G            + EA  L+  M+ KGF   ++  
Sbjct: 665 --ISRRIYPNHISYGILINGYCNMGC-----------VSEAFRLWDEMVEKGFEATIITC 711

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
           N ++ G C+     +A E   +M  KG +P+ +TYN+ I  +     +D+A  ++ KM+N
Sbjct: 712 NTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMEN 771

Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
            +  +P   +Y  I++     GR+ EA   + ++++ G  P   TY
Sbjct: 772 -SGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTY 816



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 134/338 (39%), Gaps = 44/338 (13%)

Query: 121 WVERFFDFFH---------NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
           WV+  ++ +          N  T   M     +   ++    FL DM  +G    V T +
Sbjct: 338 WVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYN 397

Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
              LI     +GL+ EA      M     +P V+ YN +IN LC+ G + +A+ +L++M 
Sbjct: 398 T--LINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEML 455

Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR------------------------ 267
             G    PD  TY IL+   C+        +                             
Sbjct: 456 KIGM--SPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGC 513

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + +A   FR M   G  PD V Y  LI G C+   +  AL++ D+M ++GC  + VTYN+
Sbjct: 514 LDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNT 573

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            +        + +A E+  +M     GV P   ++T +I+   + G + +A      ++ 
Sbjct: 574 ILNGLCKEKMLSEADELFTEMT--ERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQ 631

Query: 387 GGSVPREYTYKLVCDALNAAEE----PSLLDDGLRKRI 420
               P   TY  + D      E      L +D + +RI
Sbjct: 632 RNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 669



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 98/253 (38%), Gaps = 57/253 (22%)

Query: 187 EALATFYRMKQFRCR----PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
            +L +F  M     R    PD  A   VI  + R    ++   ++E + L    C  +  
Sbjct: 234 HSLQSFSAMIHILVRSRRLPDAQA---VILRMVRKSGVSRVE-IVESLVLTYGNCGSNPL 289

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG------ 296
            + +L+ +Y +            R++ E    FR++  KG    + A N L+ G      
Sbjct: 290 VFDLLVRTYVQ-----------ARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGW 338

Query: 297 -----------------------------CCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
                                         CK  +IE       DM +KG  P+ VTYN+
Sbjct: 339 VDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNT 398

Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
            I  Y     +++A E+M  M     G+ P   +Y  II+ LC+ G+ L A+  L E++ 
Sbjct: 399 LINAYCRQGLLEEAFELMDSMS--GKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLK 456

Query: 387 GGSVPREYTYKLV 399
            G  P   TY ++
Sbjct: 457 IGMSPDTATYNIL 469



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 13/120 (10%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PD   YN +IN   +  N ++A  L+ +ME  G    PDV TY ++++ + + G      
Sbjct: 741 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLL--PDVITYNVILNGFSRQG------ 792

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                R+ EA  +   M+ +G  PD   Y  LI+G      ++ A  + D+M ++G +P+
Sbjct: 793 -----RMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 19/156 (12%)

Query: 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALA 190
           +TC  +   + R  N     +FL +M  +G    +    +T   LI    +E  ++ A A
Sbjct: 709 ITCNTIVKGYCRAGNAVKADEFLSNMLLKG----IVPDGITYNTLINGFIKEENMDRAFA 764

Query: 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250
              +M+     PDV  YNV++N   R G   +A  ++ +M   G    PD  TYT LI+ 
Sbjct: 765 LVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVN--PDRSTYTSLING 822

Query: 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
           +             +  + EA  +   ML +GFVPD
Sbjct: 823 H-----------VTQNNLKEAFRVHDEMLQRGFVPD 847


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 16/242 (6%)

Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
             K+M+ RG      T ++  LI  L + G++ +AL  F +M+    +  VY YN +IN 
Sbjct: 383 LFKEMAGRGLEPNEVTYAI--LIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLING 440

Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
            C+ G+ ++AR LL  M   G    P   +Y+ LI+  C+ G  + C +           
Sbjct: 441 YCKQGSLDRARGLLSGMVKEGL--TPTAASYSPLIAGLCRNGDLSSCME----------- 487

Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
           L R M  +G   +   +  LI+G CK  +++ A  LFD M     IPN VT+N  I  Y 
Sbjct: 488 LHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYC 547

Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           +V  I KA ++  +M  +    P + +Y  +I  LC    V +A +F+A+L +  +V   
Sbjct: 548 LVGNIRKAFQLYDQMVEMGLK-PDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNN 606

Query: 394 YT 395
           ++
Sbjct: 607 FS 608



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 22/275 (8%)

Query: 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC--LIKVLGEEGLVNEA 188
           +E+T + +   F R   ++       DM R G       S   C  +I  L ++ LV EA
Sbjct: 290 DEVTYRTLVYGFCRMEELEMALRITHDMIRLG----FVPSEANCSFMIDELRKKELVEEA 345

Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
            +   ++      P+V+AYN +I+ LC+   F+ A  L ++M   G    P+  TY ILI
Sbjct: 346 FSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLE--PNEVTYAILI 403

Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
            + CK GM           I +A  LF  M  KG    V  YN LI+G CK   ++RA  
Sbjct: 404 HALCKRGM-----------IEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARG 452

Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHA 367
           L   M K+G  P   +Y+  I       ++   +E+ R+M     G+  ++ ++T +I+ 
Sbjct: 453 LLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMA--ERGIAWNNYTFTALING 510

Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
            C+  ++ EA     +++D   +P E T+ ++ + 
Sbjct: 511 FCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEG 545



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 142/321 (44%), Gaps = 24/321 (7%)

Query: 108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARG--NNVKGLWDFLKDMSRRG-NG 164
           +T G++KA EF   +E  +   +N      +   F  G       LWD   +M+ RG   
Sbjct: 583 LTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWD---EMAVRGVKL 639

Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
           +LV   S T ++    ++    ++   F  MK+   +PD   Y  +I+AL +  N  +A 
Sbjct: 640 DLV---SFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQAL 696

Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
              +QM + G+   P+  T+T+LI++ CK G            +  A  L + ML    +
Sbjct: 697 NCWDQMVVDGY--SPNTVTHTVLINNLCKSGY-----------LGSAELLCKEMLAGNVL 743

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
           P+   YNC +D       +E+A +L   M  +G + + V++N  I+      +I +AI++
Sbjct: 744 PNKFTYNCFLDYFATEGDMEKAKDLHSAM-LQGHLASIVSFNILIKGLCKAGKIQEAIDL 802

Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           M K+       P   SY+ IIH LC+ G + +A +   E++  G  P    Y +     N
Sbjct: 803 MSKITESGFS-PDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCN 861

Query: 405 AAEEPSLLDDGLRKRIRDGIE 425
              E           IR G++
Sbjct: 862 VHGESDKALGIYTNMIRSGVQ 882



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 100/220 (45%), Gaps = 28/220 (12%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           TC+I  L +E  + +AL  + +M      P+   + V+IN LC+ G    A  L ++M L
Sbjct: 680 TCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEM-L 738

Query: 233 PGFRCPPDVYTYTILISSYCKYG-----------MQTGCRKAIRR------------RIW 269
            G    P+ +TY   +  +   G           M  G   +I              +I 
Sbjct: 739 AG-NVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQ 797

Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
           EA  L   +   GF PD ++Y+ +I   CK   I +A EL+++M  KG  P+ V YN FI
Sbjct: 798 EAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFI 857

Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHAL 368
           R+ +V  E DKA+ +   M  +  GV P   +Y  ++  +
Sbjct: 858 RWCNVHGESDKALGIYTNM--IRSGVQPNWDTYRALLSGI 895



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 14/212 (6%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           F +M Q     D Y Y   I A C   N + AR L+ +ME  G +       Y +L+   
Sbjct: 209 FDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKA--SAVPYNVLMYGL 266

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK             R+ EA  +  +M+  G   D V Y  L+ G C+   +E AL +  
Sbjct: 267 CK-----------NMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITH 315

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
           DM + G +P+    +  I        +++A  +  K+ +L   VP   +Y  +I  LC+ 
Sbjct: 316 DMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM-VPNVFAYNALIDKLCKN 374

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
            R  +A     E+   G  P E TY ++  AL
Sbjct: 375 ERFDDADRLFKEMAGRGLEPNEVTYAILIHAL 406



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 14/169 (8%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           C +     EG + +A      M Q      + ++N++I  LC+ G   +A  L+ ++   
Sbjct: 751 CFLDYFATEGDMEKAKDLHSAMLQGHL-ASIVSFNILIKGLCKAGKIQEAIDLMSKITES 809

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           GF   PD  +Y+ +I   CK G            I +A  L+  ML+KG  PDVVAYN  
Sbjct: 810 GF--SPDCISYSTIIHELCKMG-----------DINKAFELWNEMLYKGLKPDVVAYNIF 856

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
           I  C      ++AL ++ +M + G  PN  TY + +   S++    +A+
Sbjct: 857 IRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMVSKGQAL 905



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 14/199 (7%)

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
           Y  + ++ +L ++  F  AR L ++M   G     D Y YT  I +YC+     G R  +
Sbjct: 187 YTASQILFSLVKIRQFALARDLFDKMLQSGVHL--DEYVYTAGIRAYCESRNLDGARGLV 244

Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
            R           M  +G     V YN L+ G CK  R++ A+E+ + M   G   + VT
Sbjct: 245 VR-----------MESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVT 293

Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
           Y + +  +  + E++ A+ +   M  L   VP+ ++ + +I  L +   V EA     +L
Sbjct: 294 YRTLVYGFCRMEELEMALRITHDMIRLGF-VPSEANCSFMIDELRKKELVEEAFSLACKL 352

Query: 385 VDGGSVPREYTYKLVCDAL 403
            D G VP  + Y  + D L
Sbjct: 353 GDLGMVPNVFAYNALIDKL 371


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 106/199 (53%), Gaps = 14/199 (7%)

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           +PDVY Y+V+IN LC+    + A  L ++M + G    P+  T+T LI  +CK G     
Sbjct: 191 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL--IPNGVTFTTLIDGHCKNG----- 243

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 R+  A  +++ ML +  +PD++ YN LI G CK   +++A +L D+M+ KG  P
Sbjct: 244 ------RVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKP 297

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
           ++ TY + I       ++D A +  ++M   N  +    +YT +I  LC+ G+ ++A   
Sbjct: 298 DKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLD-DVAYTALISGLCQEGQSVDAEKM 356

Query: 381 LAELVDGGSVPREYTYKLV 399
           L E++  G  P   TY ++
Sbjct: 357 LREMLSVGLKPDIGTYTMI 375



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 124 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 173

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  +++ A ELFD+M  KG IP
Sbjct: 174 ------DLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIP 227

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L   +P   +Y  +I+ LC+ G + +A 
Sbjct: 228 NGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSL---LPDLITYNTLIYGLCKNGDLKQAH 284

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P ++TY  + D 
Sbjct: 285 DLIDEMSMKGLKPDKFTYTTLIDG 308



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 14/197 (7%)

Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
           + T LI    + G V+ A+  + RM      PD+  YN +I  LC+ G+  +A  L+++M
Sbjct: 231 TFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEM 290

Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
            + G +  PD +TYT LI   CK G      K  +R I E   L           D VAY
Sbjct: 291 SMKGLK--PDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRL-----------DDVAY 337

Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
             LI G C+  +   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ 
Sbjct: 338 TALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQR 397

Query: 351 LNHGVPTSSSYTPIIHA 367
             H  P+  +Y  +++ 
Sbjct: 398 NGHA-PSVVTYNVLMNG 413



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             +  ++K   D + +MS +G        + T LI    +EG ++ A     RM Q   R
Sbjct: 274 LCKNGDLKQAHDLIDEMSMKGLKP--DKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIR 331

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
            D  AY  +I+ LC+ G    A  +L +M   G +  PD+ TYT++I+ +CK G      
Sbjct: 332 LDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLK--PDIGTYTMIINEFCKKG------ 383

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
                 +W+ + L + M   G  P VV YN L++G
Sbjct: 384 -----DVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 413



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 108/241 (44%), Gaps = 30/241 (12%)

Query: 189 LATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
           L ++  M  F C   +   A +++   + R G  + +      +E  G +   D+Y ++ 
Sbjct: 1   LHSYCTMIHFLCTHQMLSEAKSLIQLVVSRKGKGSASVVFATILETKGTQ-RSDIYVFSG 59

Query: 247 LISSYCKYGM---QTGCRKAIR-RRIW--------EANHLFRLMLFK---GFVPDVVA-- 289
           LI++Y + G       C +  R  ++W           HL +L  FK   GF  +++   
Sbjct: 60  LITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLRYFKLVWGFYEEILECG 119

Query: 290 -------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
                  +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  + ++D+  
Sbjct: 120 YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 179

Query: 343 EMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
            +   M  L +GV P   +Y+ +I+ LC+  ++ +A +   E++  G +P   T+  + D
Sbjct: 180 RLKSAM--LANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLID 237

Query: 402 A 402
            
Sbjct: 238 G 238


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 124/278 (44%), Gaps = 49/278 (17%)

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           ++G +  A + F  + ++  RP V +YN ++N   R+G+ ++   L   M   G +  PD
Sbjct: 154 KDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ--PD 211

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
           VYTY++LI+  CK             +  +AN LF  ML KG VP+ V +  LIDG CK 
Sbjct: 212 VYTYSVLINGXCK-----------ESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKN 260

Query: 301 YRIERALELF-----------------------------------DDMNKKGCIPNRVTY 325
            R++ A+E++                                   D+M+ KG  P+++TY
Sbjct: 261 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITY 320

Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            + I       ++D A E  ++M   N  +     YT +I  LC  GR ++A   L E++
Sbjct: 321 TTLIDGCCKEGDLDXAFEHXKRMIQENXRLDX-VXYTALISGLCXEGRSVDAEKMLREML 379

Query: 386 DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
             G  P   TY ++ +      +       L++  RDG
Sbjct: 380 SVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDG 417



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N++++  C+ G+   A+ + + +   G R  P V +Y  L++ Y + G        
Sbjct: 142 LYFFNILMHRFCKDGDIRJAQSVFDAITKWGLR--PSVVSYNTLMNGYIRLG-------- 191

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   ML  G  PDV  Y+ LI+G CK  + + A ELFD+M  KG +P
Sbjct: 192 ------DLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVP 245

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N V + + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A 
Sbjct: 246 NXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAH 302

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
             + E+   G  P + TY  + D 
Sbjct: 303 HLIDEMSXKGLKPDKITYTTLIDG 326



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 14/195 (7%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI    + G V+ A+  + +M      PD+  YN +I  LC+ G+  +A  L+++M  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSX 310

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
            G +  PD  TYT LI   CK G      +  +R I E   L           D V Y  
Sbjct: 311 KGLK--PDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRL-----------DXVXYTA 357

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI G C   R   A ++  +M   G  P+  TY   I  +    ++ K  +++++MQ   
Sbjct: 358 LISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDG 417

Query: 353 HGVPTSSSYTPIIHA 367
           H VP+  +Y  +++ 
Sbjct: 418 H-VPSVVTYNVLMNG 431



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 27/189 (14%)

Query: 239 PDVYTYTILISSYCKYGMQTGC----RKAIRRRIWEA--------NHLFRLMLFK---GF 283
            D+Y ++ LI++Y + G         R     + W           HL +L  FK   GF
Sbjct: 70  SDJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 129

Query: 284 VPDVVA---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
             +++          +N L+   CK   I  A  +FD + K G  P+ V+YN+ +  Y  
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 335 VNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           + ++D+   +   M  L  GV P   +Y+ +I+  C+  +  +A +   E++  G VP  
Sbjct: 190 LGDLDEGFRLKSAM--LASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNX 247

Query: 394 YTYKLVCDA 402
             +  + D 
Sbjct: 248 VXFTTLIDG 256


>gi|449485620|ref|XP_004157226.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 127/280 (45%), Gaps = 16/280 (5%)

Query: 117 EFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLI 176
           +F+ W  R  ++ H   +   +  +FA     K +W  L +M+ +G    VT  +   LI
Sbjct: 136 KFFIWSGRIENYRHTVNSYHIIMKIFAECEEFKAMWRVLDEMTEKGYP--VTARTFMILI 193

Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
              GE GL    +  F + K F  RP  ++YN +++ L  V  +    ++ +QM L    
Sbjct: 194 CTCGEAGLAKRVVERFIKSKTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDH- 252

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
             PD+ TY +L+ S CK G           ++ + + L   M  KGF PD   YN L+  
Sbjct: 253 -SPDILTYNVLLFSSCKLG-----------KLDQFHRLLDEMARKGFSPDFHTYNILLYV 300

Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
             K  +   AL L + M + G  PN + + + I   S    +D       ++ N N  +P
Sbjct: 301 LGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRAGNLDACKYFFDELGN-NGCIP 359

Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
               YT +I +  EAG+  +AR F  E++  G +P  +TY
Sbjct: 360 DVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQLPNVFTY 399



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 4/141 (2%)

Query: 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           +R  N+     F  ++    NG +      T +I    E G   +A A F  M      P
Sbjct: 337 SRAGNLDACKYFFDELG--NNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQLP 394

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
           +V+ YN +I   C VG F +A  +L +ME  G  C P+   Y+ L+S     G      K
Sbjct: 395 NVFTYNSMIRGFCMVGKFKEAYSMLSEMESRG--CRPNFLVYSTLVSYLRNAGKLGEAHK 452

Query: 263 AIRRRIWEANHLFRLMLFKGF 283
            I+R +    +   +  FKG+
Sbjct: 453 VIKRMVENGQYAHLMTKFKGY 473


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M   G    P+  
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGL--VPNGV 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +    D++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A E  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 103/204 (50%), Gaps = 24/204 (11%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +     R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWSLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
                 + +  FRL   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M   G +P
Sbjct: 186 ------DLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVP 239

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378
           N VT+ + I  +     +D A+E+ ++M  Q+L+  + T   Y  +I+ LC+ G + +A+
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLIT---YNTLIYGLCKKGDLKQAQ 296

Query: 379 DFLAELVDGGSVPREYTYKLVCDA 402
           D + E+   G  P + TY  + D 
Sbjct: 297 DLIDEMSMKGLKPDKITYTTLIDG 320



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG +    + T LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANELFDEMLD-----NGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M       D+  YN +I  LC+ G+  +A+ L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK--PDKITYTTLIDGNCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T      R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFE--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 14/241 (5%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G ++E       M+    +PDVY Y+V+IN LC+    + A  L ++M L     P  V 
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEM-LDNXLVPNGV- 242

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           T+T LI  +CK G           R+  A  +++ ML +   PD++ YN LI G CK   
Sbjct: 243 TFTTLIDGHCKNG-----------RVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           +++A +L D+M+ KG  P+++TY + I       +++ A +  ++M   N  +    +YT
Sbjct: 292 LKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLD-DVAYT 350

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
            +I  LC+ GR ++A   L E++  G  P   TY ++ +      +       L++  RD
Sbjct: 351 ALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410

Query: 423 G 423
           G
Sbjct: 411 G 411



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 18/201 (8%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
           +Y +N+++++  + G    A+ + + +     R  P V ++  L++ Y K G        
Sbjct: 136 LYFFNILMHSFVKEGEIRLAQSVFDAITKWSLR--PSVVSFNTLMNGYIKLG-------- 185

Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
               + E   L   M   G  PDV  Y+ LI+G CK  +++ A ELFD+M     +PN V
Sbjct: 186 ---DLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGV 242

Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
           T+ + I  +     +D A+E+ ++M  Q+L+   P   +Y  +I+ LC+ G + +A+D +
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS---PDLITYNTLIYGLCKKGDLKQAQDLI 299

Query: 382 AELVDGGSVPREYTYKLVCDA 402
            E+   G  P + TY  + D 
Sbjct: 300 DEMSMKGLKPDKITYTTLIDG 320



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 25/216 (11%)

Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194
           CKE     ++ ++   L+D + D     NG   TT     LI    + G V+ A+  + +
Sbjct: 217 CKE-----SKMDDANELFDEMLDNXLVPNGVTFTT-----LIDGHCKNGRVDLAMEIYKQ 266

Query: 195 MKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254
           M      PD+  YN +I  LC+ G+  +A+ L+++M + G +  PD  TYT LI   CK 
Sbjct: 267 MLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK--PDKITYTTLIDGNCKE 324

Query: 255 G-MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           G ++T  +   R+R+ + N   RL        D VAY  LI G C+  R   A ++  +M
Sbjct: 325 GDLETAFK--YRKRMIKEN--IRL--------DDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
              G  P   TY   I  +    ++    +++++MQ
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQ 408


>gi|255660936|gb|ACU25637.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 484

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 133/281 (47%), Gaps = 20/281 (7%)

Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
           A +F+ WVER   F HN  T  ++  +  R + +      L DM ++G   L     +  
Sbjct: 28  ALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG---LEWDEDLWV 84

Query: 175 L-IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
           L I   G+ G+V E++  F +M++      + +Y+V+   + R G +  A+    +M   
Sbjct: 85  LMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDVLFKVILRRGRYMMAKRYFNKMLSE 144

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
           G    P  +T+ I+I  +   G           ++  AN  F  M  +   PDV+ YN +
Sbjct: 145 GIE--PTRHTFNIMIWGFFLSG-----------KVETANRFFEDMKSRXITPDVITYNTM 191

Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
           I+G  +  ++E A + F +M  +   P  VT  + I+ Y  V+ +D A+ +  +M+    
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTXTTLIKGYVSVDRVDDALRLXEEMKGF-- 249

Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
           G+ P + +Y+ ++  LC A ++ EAR  L E+VD    P +
Sbjct: 250 GIKPNAITYSTLLPGLCNAEKMSEARSXLKEMVDKYIAPTD 290



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 21/212 (9%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           + EA   F  MK     P V     +I     V   + A  L E+M+  GF   P+  TY
Sbjct: 201 MEEAEKYFVEMKGRNIEPTVVTXTTLIKGYVSVDRVDDALRLXEEMK--GFGIKPNAITY 258

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRI 303
           + L+   C              ++ EA    + M+ K   P D   +  LI G CK   +
Sbjct: 259 STLLPGLCN-----------AEKMSEARSXLKEMVDKYIAPTDNSIFLRLISGQCKAGNL 307

Query: 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSS--- 359
           + A ++   M +         Y   I  Y    + DKAI ++ K+   +  + P S+   
Sbjct: 308 DAAADVLQAMIRLSVPTEAGHYGVLIENYCKAGQYDKAINLLDKLIEKDIILRPQSTLHM 367

Query: 360 ---SYTPIIHALCEAGRVLEARDFLAELVDGG 388
              +Y P+I  LC  GR  +A   + +L+  G
Sbjct: 368 EXIAYNPLIEYLCNNGRTAKAETLVRQLMKLG 399


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.325    0.140    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,915,247,330
Number of Sequences: 23463169
Number of extensions: 283353892
Number of successful extensions: 936506
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5694
Number of HSP's successfully gapped in prelim test: 4513
Number of HSP's that attempted gapping in prelim test: 790967
Number of HSP's gapped (non-prelim): 56689
length of query: 451
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 305
effective length of database: 8,933,572,693
effective search space: 2724739671365
effective search space used: 2724739671365
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 79 (35.0 bits)