BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013010
         (451 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 33.1 bits (74), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
           + R  ++F  M     +PN  T+ +  R     ++ + A +M+++M+    G+ P   SY
Sbjct: 86  LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF--GIQPRLRSY 143

Query: 362 TPIIHALCEAGRVLEARDFLAEL 384
            P +   C  G   +A +  A +
Sbjct: 144 GPALFGFCRKGDADKAYEVDAHM 166


>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
           Homomalla
 pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
           Homomalla
          Length = 1066

 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 75  RTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERF 125
           +TPL   +L+K A+NIAN    LG    + P+            Y WV+  
Sbjct: 309 KTPLSPDVLEKTAFNIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQHL 359


>pdb|1U5U|A Chain A, The Structure Of An Allene Oxide Synthase Reveals A Novel
           Use For A Catalase Fold
 pdb|1U5U|B Chain B, The Structure Of An Allene Oxide Synthase Reveals A Novel
           Use For A Catalase Fold
          Length = 374

 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 75  RTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERF 125
           +TPL   +L+K A+NIAN    LG    + P+            Y WV+  
Sbjct: 309 KTPLSPDVLEKTAFNIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQHL 359


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,159,519
Number of Sequences: 62578
Number of extensions: 539333
Number of successful extensions: 1624
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1618
Number of HSP's gapped (non-prelim): 10
length of query: 451
length of database: 14,973,337
effective HSP length: 102
effective length of query: 349
effective length of database: 8,590,381
effective search space: 2998042969
effective search space used: 2998042969
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)