BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013010
(451 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1PFC5|PP130_ARATH Pentatricopeptide repeat-containing protein At1g77405
OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1
Length = 458
Score = 622 bits (1603), Expect = e-177, Method: Compositional matrix adjust.
Identities = 293/446 (65%), Positives = 359/446 (80%), Gaps = 6/446 (1%)
Query: 1 MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
M S+PL ++ +V Q++ M++N PFDA LA+ST P+T + V+DVL SIPRFFF
Sbjct: 1 MKPSQPLCNR---IVDQLITAMIQNRPFDAVLASSTVA--KPWTQQLVSDVLHSIPRFFF 55
Query: 61 QSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYH 120
SPRSIGRQ GFRHR+PL+QR L E+ + VLVLGP AY DP+KV++GL KA EF+
Sbjct: 56 ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFF 115
Query: 121 WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVL 179
W+E F F HNE+TC++M + A+GN+ KGLWDFL+ +SRR NG+ +VTT+S+TCL+K L
Sbjct: 116 WIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175
Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235
Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
D YTYTILISSYC+YGMQTGCRKAIRRR+WEAN +FR MLF+GFVPDVV YNCLIDGCCK
Sbjct: 236 DTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCK 295
Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
T RI RALELF+DM KGC+PN+VTYNSFIRYYSV NEI+ AIEMMR M+ L HGVP SS
Sbjct: 296 TNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVPGSS 355
Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
+YTP+IHAL E R EARD + E+V+ G VPREYTYKLVCDAL++ S LD+ L KR
Sbjct: 356 TYTPLIHALVETRRAAEARDLVVEMVEAGLVPREYTYKLVCDALSSEGLASTLDEELHKR 415
Query: 420 IRDGIEYRFRQVMKVKPIMKHKELLK 445
+R+GI+ R+ +VMK+KP M KE+++
Sbjct: 416 MREGIQQRYSRVMKIKPTMARKEVVR 441
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 15/262 (5%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + V+ +F+++MS + +G + L+ L + G V A+ M Q
Sbjct: 269 FCKEGRVEDALNFIQEMSNQ-DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
PDVY YN VI+ LC++G +A +L+QM C P+ TY LIS+ CK
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD--CSPNTVTYNTLISTLCK-------- 377
Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
++ EA L R++ KG +PDV +N LI G C T A+ELF++M KGC P+
Sbjct: 378 ---ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434
Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
TYN I ++D+A+ M+++M+ L+ + +Y +I C+A + EA +
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQME-LSGCARSVITYNTLIDGFCKANKTREAEEIF 493
Query: 382 AELVDGGSVPREYTYKLVCDAL 403
E+ G TY + D L
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGL 515
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 102/194 (52%), Gaps = 14/194 (7%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ F M+ C PD + YN++I++LC G ++A +L+QMEL G C V TY L
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARSVITYNTL 476
Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
I +CK + EA +F M G + V YN LIDG CK+ R+E A
Sbjct: 477 IDGFCK-----------ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAA 525
Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
+L D M +G P++ TYNS + ++ +I KA ++++ M + N P +Y +I
Sbjct: 526 QLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTS-NGCEPDIVTYGTLISG 584
Query: 368 LCEAGRVLEARDFL 381
LC+AGRV A L
Sbjct: 585 LCKAGRVEVASKLL 598
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 111/252 (44%), Gaps = 16/252 (6%)
Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ LK M G V T + LI + EA F M+ + YN +I+
Sbjct: 456 NMLKQMELSGCARSVITYNT--LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLID 513
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
LC+ A L++QM + G + PD YTY L++ +C+ G I +A
Sbjct: 514 GLCKSRRVEDAAQLMDQMIMEGQK--PDKYTYNSLLTHFCRGG-----------DIKKAA 560
Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
+ + M G PD+V Y LI G CK R+E A +L + KG YN I+
Sbjct: 561 DIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGL 620
Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR-VLEARDFLAELVDGGSVP 391
+ +AI + R+M N P + SY + LC G + EA DFL EL++ G VP
Sbjct: 621 FRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVP 680
Query: 392 REYTYKLVCDAL 403
+ ++ + L
Sbjct: 681 EFSSLYMLAEGL 692
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 31/232 (13%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
P+ Y ++ L R G+F+ + +LE M+ RC T+ ILI SY ++ +Q
Sbjct: 81 PEPALYEEILLRLGRSGSFDDMKKILEDMK--SSRCEMGTSTFLILIESYAQFELQDEIL 138
Query: 262 KAIRRRIWE-----ANHLFRLML--------------------FKGFVPDVVAYNCLIDG 296
+ I E H + ML G PDV +N LI
Sbjct: 139 SVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKA 198
Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
C+ +++ A+ + +DM G +P+ T+ + ++ Y ++D A+ + +M + G
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQM--VEFGCS 256
Query: 357 TSS-SYTPIIHALCEAGRVLEARDFLAELVD-GGSVPREYTYKLVCDALNAA 406
S+ S I+H C+ GRV +A +F+ E+ + G P +YT+ + + L A
Sbjct: 257 WSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKA 308
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 121/271 (44%), Gaps = 20/271 (7%)
Query: 136 KEMGIVFARGNNVKGLWDFLKDM--SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATF- 192
+E+ + R + + L+DM SR G TS+ LI+ + L +E L+
Sbjct: 87 EEILLRLGRSGSFDDMKKILEDMKSSRCEMG----TSTFLILIESYAQFELQDEILSVVD 142
Query: 193 YRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252
+ + +F +PD + YN ++N L + +M + G + PDV T+ +LI + C
Sbjct: 143 WMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIK--PDVSTFNVLIKALC 200
Query: 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312
+ ++ A + M G VPD + ++ G + ++ AL + +
Sbjct: 201 R-----------AHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQ 249
Query: 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372
M + GC + V+ N + + ++ A+ +++M N + P ++ +++ LC+AG
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309
Query: 373 RVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
V A + + ++ G P YTY V L
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 125/259 (48%), Gaps = 17/259 (6%)
Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG-EEGLVNEALATFYRMKQFR 199
+ N + + F K+M R G T +S+ LIK L +G V+ L F M +
Sbjct: 130 ILVEENQLNLAFKFYKNM--REIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRG 187
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
C PD Y Y +I+ LCR G ++A+ L +M C P V TYT LI+ C
Sbjct: 188 CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD--CAPTVVTYTSLINGLCG------ 239
Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
+ + EA M KG P+V Y+ L+DG CK R +A+ELF+ M +GC
Sbjct: 240 -----SKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCR 294
Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
PN VTY + I +I +A+E++ +M NL P + Y +I C + EA +
Sbjct: 295 PNMVTYTTLITGLCKEQKIQEAVELLDRM-NLQGLKPDAGLYGKVISGFCAISKFREAAN 353
Query: 380 FLAELVDGGSVPREYTYKL 398
FL E++ GG P T+ +
Sbjct: 354 FLDEMILGGITPNRLTWNI 372
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 115/266 (43%), Gaps = 55/266 (20%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L G ++EA F M + C P V Y +IN LC N ++A LE+M+ G
Sbjct: 198 LISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKG 257
Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
P+V+TY+ L+ CK G R +A LF +M+ +G P++V Y LI
Sbjct: 258 IE--PNVFTYSSLMDGLCKDG-----------RSLQAMELFEMMMARGCRPNMVTYTTLI 304
Query: 295 DGCCKTYRIERALELFDDMNKKG-----------------------------------CI 319
G CK +I+ A+EL D MN +G
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGIT 364
Query: 320 PNRVTYNSFIRYYSVV------NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
PNR+T+N ++ + V N +A + M++ V + ++ LC+ G
Sbjct: 365 PNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEV-ETLESLVKCLCKKGE 423
Query: 374 VLEARDFLAELVDGGSVPREYTYKLV 399
+A + E+V G +P + T+KL+
Sbjct: 424 FQKAVQLVDEIVTDGCIPSKGTWKLL 449
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 282 GFVPDVVAYNCLIDGCCKT-YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
G P V + N LI C+ ++ L++F +M K+GC P+ TY + I ID+
Sbjct: 151 GLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDE 210
Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
A ++ +M PT +YT +I+ LC + V EA +L E+ G P +TY +
Sbjct: 211 AKKLFTEMVE-KDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLM 269
Query: 401 DAL 403
D L
Sbjct: 270 DGL 272
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 34/215 (15%)
Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
NV +L++M +G V T S L+ L ++G +A+ F M CRP++
Sbjct: 242 NVDEAMRYLEEMKSKGIEPNVFTYS--SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVT 299
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK------------- 253
Y +I LC+ +A LL++M L G + PD Y +IS +C
Sbjct: 300 YTTLITGLCKEQKIQEAVELLDRMNLQGLK--PDAGLYGKVISGFCAISKFREAANFLDE 357
Query: 254 --YGMQTGCRKAIRRRIWEANHLFR---------------LMLFKGFVPDVVAYNCLIDG 296
G T R + +N + R M +G +V L+
Sbjct: 358 MILGGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKC 417
Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
CK ++A++L D++ GCIP++ T+ I +
Sbjct: 418 LCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGH 452
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 128 bits (322), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 126/253 (49%), Gaps = 27/253 (10%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ V+ + G A+ +M++ + D Y+++I+ LC+ G+ + A L +ME+ G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293
Query: 235 FRCPPDVYTYTILISSYCKYGMQTG----CRKAIRRRIW--------------------E 270
F+ D+ TY LI +C G R I+R+I E
Sbjct: 294 FK--ADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLRE 351
Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
A+ L + M+ +G P+ + YN LIDG CK R+E A+++ D M KGC P+ +T+N I
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILIN 411
Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
Y N ID +E+ R+M +L + + +Y ++ C++G++ A+ E+V
Sbjct: 412 GYCKANRIDDGLELFREM-SLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVR 470
Query: 391 PREYTYKLVCDAL 403
P +YK++ D L
Sbjct: 471 PDIVSYKILLDGL 483
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 128/282 (45%), Gaps = 28/282 (9%)
Query: 150 GLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G WD L+DM +R V T SV LI +EG + EA M Q P+
Sbjct: 312 GRWDDGAKLLRDMIKRKISPNVVTFSV--LIDSFVKEGKLREADQLLKEMMQRGIAPNTI 369
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
YN +I+ C+ +A +++ M G C PD+ T+ ILI+ YCK
Sbjct: 370 TYNSLIDGFCKENRLEEAIQMVDLMISKG--CDPDIMTFNILINGYCKAN---------- 417
Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
RI + LFR M +G + + V YN L+ G C++ ++E A +LF +M + P+ V+Y
Sbjct: 418 -RIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSY 476
Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQ----NLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
+ E++KA+E+ K++ L+ G+ Y IIH +C A +V +A D
Sbjct: 477 KILLDGLCDNGELEKALEIFGKIEKSKMELDIGI-----YMIIIHGMCNASKVDDAWDLF 531
Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
L G Y ++ L + S D RK +G
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 105/233 (45%), Gaps = 17/233 (7%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + N + + ++MS RG + T + L++ + G + A F M R R
Sbjct: 413 YCKANRIDDGLELFREMSLRG--VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVR 470
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
PD+ +Y ++++ LC G KA + ++E + D+ Y I+I C
Sbjct: 471 PDIVSYKILLDGLCDNGELEKALEIFGKIEKS--KMELDIGIYMIIIHGMCNAS------ 522
Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
++ +A LF + KG D AYN +I C+ + +A LF M ++G P+
Sbjct: 523 -----KVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPD 577
Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
+TYN IR + ++ A E++ +M+ + G P S ++ + +G +
Sbjct: 578 ELTYNILIRAHLGDDDATTAAELIEEMK--SSGFPADVSTVKMVINMLSSGEL 628
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 113/269 (42%), Gaps = 43/269 (15%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A+ F M Q R P V +N + +A+ + + L +QME G +YT +
Sbjct: 70 DDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGI--AHSIYTLS 127
Query: 246 ILISSYCKYGMQTGCRK------------------------------AIRRRIWEANHLF 275
I+I+ +C+ CRK + R+ EA L
Sbjct: 128 IMINCFCR------CRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELV 181
Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
M+ G P ++ N L++G C ++ A+ L D M + G PN VTY +
Sbjct: 182 DRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKS 241
Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
+ A+E++RKM+ N + + Y+ II LC+ G + A + E+ G T
Sbjct: 242 GQTALAMELLRKMEERNIKLD-AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIT 300
Query: 396 YKLV----CDALNAAEEPSLLDDGLRKRI 420
Y + C+A + LL D ++++I
Sbjct: 301 YNTLIGGFCNAGRWDDGAKLLRDMIKRKI 329
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 128 bits (322), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 130/260 (50%), Gaps = 21/260 (8%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI+ + V A+ M+ C PDV YNV++N +C+ G ++A L M
Sbjct: 243 TILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM-- 300
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
P C P+V T+ I++ S C G R +A L ML KGF P VV +N
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTG-----------RWMDAEKLLADMLRKGFSPSVVTFNI 349
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
LI+ C+ + RA+++ + M + GC PN ++YN + + ++D+AIE + +M ++
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM--VS 407
Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS- 410
G P +Y ++ ALC+ G+V +A + L +L G P TY V D L A +
Sbjct: 408 RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGK 467
Query: 411 ---LLDDGLRKRIR-DGIEY 426
LLD+ K ++ D I Y
Sbjct: 468 AIKLLDEMRAKDLKPDTITY 487
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 133/259 (51%), Gaps = 22/259 (8%)
Query: 150 GLW----DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G W L DM R+G V T ++ LI L +GL+ A+ +M Q C+P+
Sbjct: 323 GRWMDAEKLLADMLRKGFSPSVVTFNI--LINFLCRKGLLGRAIDILEKMPQHGCQPNSL 380
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
+YN +++ C+ ++A LE+M G C PD+ TY ++++ CK G
Sbjct: 381 SYNPLLHGFCKEKKMDRAIEYLERMVSRG--CYPDIVTYNTMLTALCKDG---------- 428
Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
++ +A + + KG P ++ YN +IDG K + +A++L D+M K P+ +TY
Sbjct: 429 -KVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY 487
Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
+S + S ++D+AI+ + + + G+ P + ++ I+ LC++ + A DFL +
Sbjct: 488 SSLVGGLSREGKVDEAIKFFHEFERM--GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFM 545
Query: 385 VDGGSVPREYTYKLVCDAL 403
++ G P E +Y ++ + L
Sbjct: 546 INRGCKPNETSYTILIEGL 564
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 130/273 (47%), Gaps = 24/273 (8%)
Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
E TC++ G+ A L +M RG V T +V L+ + +EG ++EA+
Sbjct: 247 EATCRDSGVGHA--------MKLLDEMRDRGCTPDVVTYNV--LVNGICKEGRLDEAIKF 296
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
M C+P+V +N+++ ++C G + A LL M GF P V T+ ILI+
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF--SPSVVTFNILINFL 354
Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
C+ G+ + A + M G P+ ++YN L+ G CK +++RA+E +
Sbjct: 355 CRKGL-----------LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE 403
Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
M +GC P+ VTYN+ + +++ A+E++ ++ + P +Y +I L +A
Sbjct: 404 RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCS-PVLITYNTVIDGLAKA 462
Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
G+ +A L E+ P TY + L+
Sbjct: 463 GKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLS 495
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 21/221 (9%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
PD+ +I CR+G KA +LE +E G PDV TY ++IS YCK G
Sbjct: 135 PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSG--AVPDVITYNVMISGYCKAG------ 186
Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
E N+ ++ PDVV YN ++ C + ++++A+E+ D M ++ C P+
Sbjct: 187 --------EINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPD 238
Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
+TY I + + A++++ +M++ P +Y +++ +C+ GR+ EA FL
Sbjct: 239 VITYTILIEATCRDSGVGHAMKLLDEMRD-RGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297
Query: 382 AELVDGGSVPREYTYKLV----CDALNAAEEPSLLDDGLRK 418
++ G P T+ ++ C + LL D LRK
Sbjct: 298 NDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRK 338
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 15/198 (7%)
Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
++L+ M RG + T + ++ L ++G V +A+ ++ C P + YN VI+
Sbjct: 400 EYLERMVSRGCYPDIVTYNT--MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVID 457
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
L + G KA LL++M + PD TY+ L+ + G ++ EA
Sbjct: 458 GLAKAGKTGKAIKLLDEMRAKDLK--PDTITYSSLVGGLSREG-----------KVDEAI 504
Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
F G P+ V +N ++ G CK+ + +RA++ M +GC PN +Y I
Sbjct: 505 KFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGL 564
Query: 333 SVVNEIDKAIEMMRKMQN 350
+ +A+E++ ++ N
Sbjct: 565 AYEGMAKEALELLNELCN 582
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
M++ G VPD++ LI G C+ + +A ++ + + G +P+ +TYN I Y E
Sbjct: 128 MVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGE 187
Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
I+ A+ ++ +M P +Y I+ +LC++G++ +A + L ++ P TY
Sbjct: 188 INNALSVLDRMSV----SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYT 243
Query: 398 LVCDA 402
++ +A
Sbjct: 244 ILIEA 248
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 126/259 (48%), Gaps = 27/259 (10%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++KV+ + G A+ +M++ + + D Y+++I+ LC+ G+ + A L +ME+ G
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277
Query: 235 FRCPPDVYTYTILISSYCKYGMQTG----CRKAIRRRIW--------------------E 270
F+ D+ YT LI +C G R I+R+I E
Sbjct: 278 FK--ADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 335
Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
A L + M+ +G PD V Y LIDG CK ++++A + D M KGC PN T+N I
Sbjct: 336 AEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILIN 395
Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
Y N ID +E+ RKM +L V + +Y +I CE G++ A++ E+V
Sbjct: 396 GYCKANLIDDGLELFRKM-SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVR 454
Query: 391 PREYTYKLVCDALNAAEEP 409
P +YK++ D L EP
Sbjct: 455 PDIVSYKILLDGLCDNGEP 473
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 131/290 (45%), Gaps = 32/290 (11%)
Query: 144 RGNNVKGLWD----FLKDMSRRG-NGELVTTSS-VTCLIKVLGEEGLVNEALATFYRMKQ 197
RG G WD L+DM +R ++V S+ + C +K EG + EA M Q
Sbjct: 290 RGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVK----EGKLREAEELHKEMIQ 345
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
PD Y +I+ C+ +KA +L+ M G C P++ T+ ILI+ YCK +
Sbjct: 346 RGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG--CGPNIRTFNILINGYCKANL- 402
Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
I + LFR M +G V D V YN LI G C+ ++E A ELF +M +
Sbjct: 403 ----------IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452
Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ----NLNHGVPTSSSYTPIIHALCEAGR 373
P+ V+Y + E +KA+E+ K++ L+ G+ Y IIH +C A +
Sbjct: 453 VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI-----YNIIIHGMCNASK 507
Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
V +A D L G P TY ++ L S D RK DG
Sbjct: 508 VDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 128/274 (46%), Gaps = 34/274 (12%)
Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + + LI L EG V+EAL RM + +P + N ++N LC G + A L++
Sbjct: 142 TVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLID 201
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE------------------ 270
+M GF+ P+ TY ++ CK G QT + R++ E
Sbjct: 202 RMVETGFQ--PNEVTYGPVLKVMCKSG-QTALAMELLRKMEERKIKLDAVKYSIIIDGLC 258
Query: 271 -------ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
A +LF M KGF D++ Y LI G C R + +L DM K+ P+ V
Sbjct: 259 KDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 318
Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
+++ I + ++ +A E+ ++M + G+ P + +YT +I C+ ++ +A L
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEM--IQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376
Query: 383 ELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416
+V G P T+ ++ +N + +L+DDGL
Sbjct: 377 LMVSKGCGPNIRTFNIL---INGYCKANLIDDGL 407
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 15/218 (6%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + N + + + MS RG + T + LI+ E G + A F M R R
Sbjct: 397 YCKANLIDDGLELFRKMSLRG--VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVR 454
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
PD+ +Y ++++ LC G KA + E++E + D+ Y I+I C
Sbjct: 455 PDIVSYKILLDGLCDNGEPEKALEIFEKIEKS--KMELDIGIYNIIIHGMCNAS------ 506
Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
++ +A LF + KG PDV YN +I G CK + A LF M + G PN
Sbjct: 507 -----KVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561
Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
TYN IR + + K+ +++ +++ V S+
Sbjct: 562 GCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDAST 599
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 114/286 (39%), Gaps = 29/286 (10%)
Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V AR + D K M +G + T S+ +I ++ A + ++ +
Sbjct: 81 VVARTKQYDLVLDLCKQMELKGIAHNLYTLSI--MINCCCRCRKLSLAFSAMGKIIKLGY 138
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
PD ++ +IN LC G ++A L+++M G + P + T L++ C G +
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK--PTLITLNALVNGLCLNGKVSDA 196
Query: 261 RKAIRRRIWE------------------------ANHLFRLMLFKGFVPDVVAYNCLIDG 296
I R + A L R M + D V Y+ +IDG
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256
Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
CK ++ A LF++M KG + + Y + IR + D +++R M P
Sbjct: 257 LCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK-RKITP 315
Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
+++ +I + G++ EA + E++ G P TY + D
Sbjct: 316 DVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDG 361
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
L + M KG ++ + +I+ CC+ ++ A + K G P+ VT+++ I
Sbjct: 94 LCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLC 153
Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
+ + +A+E++ +M + H PT + +++ LC G+V +A + +V+ G P E
Sbjct: 154 LEGRVSEALELVDRMVEMGHK-PTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNE 212
Query: 394 YTY----KLVCDALNAAEEPSLLDDGLRKRIR-DGIEY 426
TY K++C + A LL ++I+ D ++Y
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKY 250
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 115/214 (53%), Gaps = 16/214 (7%)
Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
F M + + P+V+ YN++I C GN + A L ++ME G C P+V TY LI Y
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKG--CLPNVVTYNTLIDGY 250
Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
CK R+I + L R M KG P++++YN +I+G C+ R++ +
Sbjct: 251 CKL-----------RKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLT 299
Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCE 370
+MN++G + VTYN+ I+ Y +A+ M +M L HG+ P+ +YT +IH++C+
Sbjct: 300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM--LRHGLTPSVITYTSLIHSMCK 357
Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
AG + A +FL ++ G P E TY + D +
Sbjct: 358 AGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFS 391
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 134/260 (51%), Gaps = 18/260 (6%)
Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R +K + L +M+RRG + + LIK +EG ++AL M + P
Sbjct: 287 REGRMKEVSFVLTEMNRRGYS--LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPS 344
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
V Y +I+++C+ GN N+A L+QM + G CP + TYT L+ + + G
Sbjct: 345 VITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL-CPNE-RTYTTLVDGFSQKGYMN----- 397
Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
EA + R M GF P VV YN LI+G C T ++E A+ + +DM +KG P+ V
Sbjct: 398 ------EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVV 451
Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
+Y++ + + ++D+A+ + R+M + G+ P + +Y+ +I CE R EA D
Sbjct: 452 SYSTVLSGFCRSYDVDEALRVKREM--VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYE 509
Query: 383 ELVDGGSVPREYTYKLVCDA 402
E++ G P E+TY + +A
Sbjct: 510 EMLRVGLPPDEFTYTALINA 529
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 18/254 (7%)
Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
+ N+ +FL M RG + T L+ ++G +NEA M P
Sbjct: 357 KAGNMNRAMEFLDQMRVRG--LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPS 414
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
V YN +IN C G A +LE M+ G PDV +Y+ ++S +C+
Sbjct: 415 VVTYNALINGHCVTGKMEDAIAVLEDMKEKGL--SPDVVSYSTVLSGFCR---------- 462
Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
+ EA + R M+ KG PD + Y+ LI G C+ R + A +L+++M + G P+
Sbjct: 463 -SYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEF 521
Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
TY + I Y + +++KA+++ +M + GV P +Y+ +I+ L + R EA+ L
Sbjct: 522 TYTALINAYCMEGDLEKALQLHNEM--VEKGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579
Query: 383 ELVDGGSVPREYTY 396
+L SVP + TY
Sbjct: 580 KLFYEESVPSDVTY 593
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 105/222 (47%), Gaps = 19/222 (8%)
Query: 177 KVLGEE--GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
K L +E LV ++L Y + C +++V+ + R+ +KA ++ + G
Sbjct: 109 KTLDDEYASLVFKSLQETYDL----CYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHG 164
Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
F P V +Y ++ + + +R I A ++F+ ML P+V YN LI
Sbjct: 165 FM--PGVLSYNAVLDATIRS----------KRNISFAENVFKEMLESQVSPNVFTYNILI 212
Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
G C I+ AL LFD M KGC+PN VTYN+ I Y + +ID +++R M L
Sbjct: 213 RGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMA-LKGL 271
Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
P SY +I+ LC GR+ E L E+ G E TY
Sbjct: 272 EPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 161/390 (41%), Gaps = 72/390 (18%)
Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
+N+A EF + R NE T + F++ + + L++M+ G V T +
Sbjct: 361 MNRAMEFLDQM-RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
LI G + +A+A MK+ PDV +Y+ V++ CR + ++A + +M
Sbjct: 420 A--LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMV 477
Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
G + PD TY+ LI +C+ +RR EA L+ ML G PD Y
Sbjct: 478 EKGIK--PDTITYSSLIQGFCE-----------QRRTKEACDLYEEMLRVGLPPDEFTYT 524
Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN------------------------- 326
LI+ C +E+AL+L ++M +KG +P+ VTY+
Sbjct: 525 ALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYE 584
Query: 327 ----------------SFIRYYSVVNEID---------KAIEMMRKMQNLNHGVPTSSSY 361
S I + SVV+ I +A ++ M NH P ++Y
Sbjct: 585 ESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHK-PDGTAY 643
Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421
+IH C AG + +A E+V G + T + AL+ + + L+ + +R
Sbjct: 644 NIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLR 703
Query: 422 DGIEYRFRQVMKVKPIMKHKELLKCGEIDI 451
E + KV + H+E G +D+
Sbjct: 704 -SCELSEAEQAKVLVEINHRE----GNMDV 728
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 100/251 (39%), Gaps = 63/251 (25%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI EG + +AL M + PDV Y+V+IN L + +A+ LL ++
Sbjct: 524 TALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFY 583
Query: 233 PGFRCPPDVYTYTI--------------LISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
P DV +T+ LI +C GM T EA+ +F M
Sbjct: 584 EE-SVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMT-----------EADQVFESM 631
Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
L K PD AYN +I G C+ I +A L+ +M K G + + VT + +
Sbjct: 632 LGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALV--------- 682
Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHAL--CEAGRVLEAR----------------DF 380
KA+ K+ LN + I+H L CE +A+ D
Sbjct: 683 -KALHKEGKVNELN---------SVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDV 732
Query: 381 LAELVDGGSVP 391
LAE+ G +P
Sbjct: 733 LAEMAKDGFLP 743
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 13/154 (8%)
Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
SV LIK +G++ EA F M +PD AYN++I+ CR G+ KA L ++M
Sbjct: 607 SVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
GF +T+ + + K + G ++ E N + +L + +
Sbjct: 667 VKSGF------LLHTVTVIALVKALHKEG-------KVNELNSVIVHVLRSCELSEAEQA 713
Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
L++ + ++ L++ +M K G +PN ++
Sbjct: 714 KVLVEINHREGNMDVVLDVLAEMAKDGFLPNGIS 747
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 114/238 (47%), Gaps = 13/238 (5%)
Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + LI+ L G +AL M F C PD+ YN +I C+ NKA + +
Sbjct: 206 TKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFK 265
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
++ G C PDV TYT +IS YCK G ++ EA+ L ML G P V
Sbjct: 266 DVK-SGSVCSPDVVTYTSMISGYCKAG-----------KMREASSLLDDMLRLGIYPTNV 313
Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
+N L+DG K + A E+ M GC P+ VT+ S I Y V ++ + + +M
Sbjct: 314 TFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEM 373
Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
N P + +Y+ +I+ALC R+L+AR+ L +L +P+ + Y V D A
Sbjct: 374 -NARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKA 430
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 113/241 (46%), Gaps = 26/241 (10%)
Query: 192 FYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F+ +F+ R + YN++ +LC+ G + A + E M+ G P+ L+S
Sbjct: 89 FWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGV--SPNNRLLGFLVS 146
Query: 250 SYCKYG---------MQT----GCRKAIRR---------RIWEANHLFRLMLFKGFVPDV 287
S+ + G +Q+ GC + R+ +A LF L D
Sbjct: 147 SFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDT 206
Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
+N LI G C + E+ALEL M+ GC P+ VTYN+ I+ + NE++KA EM +
Sbjct: 207 KTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKD 266
Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
+++ + P +YT +I C+AG++ EA L +++ G P T+ ++ D A
Sbjct: 267 VKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAG 326
Query: 408 E 408
E
Sbjct: 327 E 327
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 119/266 (44%), Gaps = 16/266 (6%)
Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
LNKA+E + V+ + +T M + + ++ L DM R G T +
Sbjct: 257 LNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLG--IYPTNVT 314
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
L+ + G + A +M F C PDV + +I+ CRVG ++ L E+M
Sbjct: 315 FNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMN 374
Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
G P+ +TY+ILI++ C R+ +A L + K +P YN
Sbjct: 375 ARGMF--PNAFTYSILINALCN-----------ENRLLKARELLGQLASKDIIPQPFMYN 421
Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
+IDG CK ++ A + ++M KK C P+++T+ I + + + +A+ + KM +
Sbjct: 422 PVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAI 481
Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEA 377
P + + ++ L +AG EA
Sbjct: 482 GCS-PDKITVSSLLSCLLKAGMAKEA 506
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 129/278 (46%), Gaps = 20/278 (7%)
Query: 150 GLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
G WD M R G + VT LI V +EG + EA + M PD Y
Sbjct: 294 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 353
Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
N +I+ C+ ++A + + M G C PD+ TY+ILI+SYCK +R
Sbjct: 354 NSLIDGFCKENCLHEANQMFDLMVSKG--CEPDIVTYSILINSYCK-----------AKR 400
Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
+ + LFR + KG +P+ + YN L+ G C++ ++ A ELF +M +G P+ VTY
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460
Query: 328 FIRYYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
+ E++KA+E+ KMQ + G+ Y IIH +C A +V +A L
Sbjct: 461 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGI---YNIIIHGMCNASKVDDAWSLFCSLS 517
Query: 386 DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
D G P TY ++ L S D RK DG
Sbjct: 518 DKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 14/234 (5%)
Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + + L+ EG V+EA+A RM + + RPD+ + +IN LC G ++A L++
Sbjct: 140 TITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLID 199
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
+M GF+ PD TY +++ CK G A LFR M + VV
Sbjct: 200 RMVEYGFQ--PDEVTYGPVLNRLCKSGNSA-----------LALDLFRKMEERNIKASVV 246
Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
Y+ +ID CK + AL LF++M KG + VTY+S I + D +M+R+M
Sbjct: 247 QYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM 306
Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
N +P +++ +I + G++LEA++ E++ G P TY + D
Sbjct: 307 IGRNI-IPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDG 359
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 178 VLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGF 235
VLG + G +N A F M P V Y ++++ LC G NKA + E+M+
Sbjct: 427 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKS-- 484
Query: 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
R + Y I+I C ++ +A LF + KG PDVV YN +I
Sbjct: 485 RMTLGIGIYNIIIHGMCN-----------ASKVDDAWSLFCSLSDKGVKPDVVTYNVMIG 533
Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
G CK + A LF M + GC P+ TYN IR + + + ++E++ +M+
Sbjct: 534 GLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSA 593
Query: 356 PTSS 359
+S+
Sbjct: 594 DSST 597
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 27/243 (11%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
VN+A+ F M Q R P +N + +A+ R ++ + MEL G D+YT
Sbjct: 51 VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIE--HDMYTM 108
Query: 245 TILISSYCK-----YGMQTGCRK-------------------AIRRRIWEANHLFRLMLF 280
TI+I+ YC+ + R + R+ EA L M+
Sbjct: 109 TIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 168
Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
PD+V + LI+G C R+ AL L D M + G P+ VTY +
Sbjct: 169 MKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSAL 228
Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
A+++ RKM+ N Y+ +I +LC+ G +A E+ G TY +
Sbjct: 229 ALDLFRKMEERNIKASV-VQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLI 287
Query: 401 DAL 403
L
Sbjct: 288 GGL 290
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 125 bits (313), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 125/263 (47%), Gaps = 29/263 (11%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
++ V+ + G A+ +M++ + D Y+++I+ LC+ G+ + A L +ME+ G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293
Query: 235 FRCPPDVYTYTILISSYCKYGMQTG----CRKAIRRRI--------------------WE 270
++ TY ILI +C G R I+R+I E
Sbjct: 294 I--TTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLRE 351
Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
A L + M+ +G PD + Y LIDG CK +++A ++ D M KGC PN T+N I
Sbjct: 352 AEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILIN 411
Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
Y N ID +E+ RKM +L V + +Y +I CE G++ A++ E+V
Sbjct: 412 GYCKANRIDDGLELFRKM-SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP 470
Query: 391 PREYTYKLVCDAL--NAAEEPSL 411
P TYK++ D L N E +L
Sbjct: 471 PNIVTYKILLDGLCDNGESEKAL 493
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 120/262 (45%), Gaps = 28/262 (10%)
Query: 150 GLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
G WD L+DM +R V T SV LI +EG + EA M PD
Sbjct: 312 GRWDDGAKLLRDMIKRKINPNVVTFSV--LIDSFVKEGKLREAEELHKEMIHRGIAPDTI 369
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
Y +I+ C+ + +KA +++ M G C P++ T+ ILI+ YCK
Sbjct: 370 TYTSLIDGFCKENHLDKANQMVDLMVSKG--CDPNIRTFNILINGYCKA----------- 416
Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
RI + LFR M +G V D V YN LI G C+ ++ A ELF +M + PN VTY
Sbjct: 417 NRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTY 476
Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQ----NLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
+ E +KA+E+ K++ L+ G+ Y IIH +C A +V +A D
Sbjct: 477 KILLDGLCDNGESEKALEIFEKIEKSKMELDIGI-----YNIIIHGMCNASKVDDAWDLF 531
Query: 382 AELVDGGSVPREYTYKLVCDAL 403
L G P TY ++ L
Sbjct: 532 CSLPLKGVKPGVKTYNIMIGGL 553
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 118/269 (43%), Gaps = 43/269 (15%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A+ F M R P V ++ + +A+ + ++ L +QMEL G ++YT +
Sbjct: 70 DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGI--AHNLYTLS 127
Query: 246 ILISSYCKYGMQTGCRK------------------------------AIRRRIWEANHLF 275
I+I+ +C+ CRK + R+ EA L
Sbjct: 128 IMINCFCR------CRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELV 181
Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
M+ G PD++ N L++G C + + A+ L D M + GC PN VTY +
Sbjct: 182 DRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKS 241
Query: 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
+ A+E++RKM+ N + + Y+ II LC+ G + A + E+ G T
Sbjct: 242 GQTALAMELLRKMEERNIKLD-AVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIIT 300
Query: 396 YKLV----CDALNAAEEPSLLDDGLRKRI 420
Y ++ C+A + LL D ++++I
Sbjct: 301 YNILIGGFCNAGRWDDGAKLLRDMIKRKI 329
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 15/218 (6%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
+ + N + + + MS RG + T + LI+ E G +N A F M +
Sbjct: 413 YCKANRIDDGLELFRKMSLRG--VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP 470
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
P++ Y ++++ LC G KA + E++E + D+ Y I+I C
Sbjct: 471 PNIVTYKILLDGLCDNGESEKALEIFEKIEKS--KMELDIGIYNIIIHGMCNAS------ 522
Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
++ +A LF + KG P V YN +I G CK + A LF M + G P+
Sbjct: 523 -----KVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577
Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
TYN IR + + K+++++ +++ V S+
Sbjct: 578 GWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDAST 615
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 122 bits (305), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 126/262 (48%), Gaps = 16/262 (6%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
R + D L+ M R V T S +I L +G ++ A++ F M+ +
Sbjct: 203 ICRSGDTSLALDLLRKMEERNVKADVFTYST--IIDSLCRDGCIDAAISLFKEMETKGIK 260
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
V YN ++ LC+ G +N LL+ M P+V T+ +L+ + K G
Sbjct: 261 SSVVTYNSLVRGLCKAGKWNDGALLLKDM--VSREIVPNVITFNVLLDVFVKEG------ 312
Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
++ EAN L++ M+ +G P+++ YN L+DG C R+ A + D M + C P+
Sbjct: 313 -----KLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367
Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
VT+ S I+ Y +V +D +++ R + V + +Y+ ++ C++G++ A +
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGL-VANAVTYSILVQGFCQSGKIKLAEELF 426
Query: 382 AELVDGGSVPREYTYKLVCDAL 403
E+V G +P TY ++ D L
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGL 448
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 24/288 (8%)
Query: 142 FARGNNVKGLWD----FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
RG G W+ LKDM R V T +V L+ V +EG + EA + M
Sbjct: 269 LVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV--LLDVFVKEGKLQEANELYKEMIT 326
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
P++ YN +++ C ++A +L+ M +C PD+ T+T LI YC
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN--KCSPDIVTFTSLIKGYC----- 379
Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
+ +R+ + +FR + +G V + V Y+ L+ G C++ +I+ A ELF +M G
Sbjct: 380 ------MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433
Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPIIHALCEAGRVL 375
+P+ +TY + +++KA+E+ +Q ++ G+ YT II +C+ G+V
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVM---YTTIIEGMCKGGKVE 490
Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
+A + L G P TY ++ L S + LRK DG
Sbjct: 491 DAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 538
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 108/239 (45%), Gaps = 18/239 (7%)
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
++A+A F M + R P + ++ +A+ R FN +Q+EL G ++YT
Sbjct: 70 DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGI--AHNIYTLN 127
Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
I+I+ +C+ C+ + L ++M G+ PD +N LI G ++
Sbjct: 128 IMINCFCRC-----CKTCFAYSV-----LGKVMKL-GYEPDTTTFNTLIKGLFLEGKVSE 176
Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
A+ L D M + GC P+ VTYNS + + A++++RKM+ N +Y+ II
Sbjct: 177 AVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADV-FTYSTII 235
Query: 366 HALCEAGRVLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRI 420
+LC G + A E+ G TY + +C A + LL D + + I
Sbjct: 236 DSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 15/204 (7%)
Query: 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215
+++S+RG T S+ L++ + G + A F M PDV Y ++++ LC
Sbjct: 392 RNISKRGLVANAVTYSI--LVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC 449
Query: 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275
G KA + E +L + + YT +I CK G ++ +A +LF
Sbjct: 450 DNGKLEKALEIFE--DLQKSKMDLGIVMYTTIIEGMCKGG-----------KVEDAWNLF 496
Query: 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335
+ KG P+V+ Y +I G CK + A L M + G PN TYN+ IR +
Sbjct: 497 CSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRD 556
Query: 336 NEIDKAIEMMRKMQNLNHGVPTSS 359
++ + +++ +M++ SS
Sbjct: 557 GDLTASAKLIEEMKSCGFSADASS 580
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 123/251 (49%), Gaps = 17/251 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
LI G +++A A M + PDV YN +I + G A +L M
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418
Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
G C P+VY+YTIL+ +CK G +I EA ++ M G P+ V +NCL
Sbjct: 419 G--CKPNVYSYTILVDGFCKLG-----------KIDEAYNVLNEMSADGLKPNTVGFNCL 465
Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
I CK +RI A+E+F +M +KGC P+ T+NS I V+EI A+ ++R M ++
Sbjct: 466 ISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDM--ISE 523
Query: 354 GVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
GV ++ +Y +I+A G + EAR + E+V GS E TY + L A E
Sbjct: 524 GVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKA 583
Query: 413 DDGLRKRIRDG 423
K +RDG
Sbjct: 584 RSLFEKMLRDG 594
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 131/291 (45%), Gaps = 31/291 (10%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + + ++ L +MS +G T CLI +E + EA+ F M + C+
Sbjct: 434 FCKLGKIDEAYNVLNEMS--ADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCK 491
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
PDVY +N +I+ LC V A +LL M G + TY LI+++ + G R
Sbjct: 492 PDVYTFNSLISGLCEVDEIKHALWLLRDMISEG--VVANTVTYNTLINAFLRRGEIKEAR 549
Query: 262 KAIRRRIWE------------------------ANHLFRLMLFKGFVPDVVAYNCLIDGC 297
K + +++ A LF ML G P ++ N LI+G
Sbjct: 550 KLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGL 609
Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
C++ +E A+E +M +G P+ VT+NS I I+ + M RK+Q G+P
Sbjct: 610 CRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQ--AEGIPP 667
Query: 358 SS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
+ ++ ++ LC+ G V +A L E ++ G VP T+ ++ ++ E
Sbjct: 668 DTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQE 718
Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 140/327 (42%), Gaps = 33/327 (10%)
Query: 125 FFDFFHNEM--TCKEMGIV---FARGNNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKV 178
F+D ++ T G+V F N + L+DM++ G V S + LI
Sbjct: 205 FYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHG---CVPNSVIYQTLIHS 261
Query: 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP 238
L + VNEAL M C PD +N VI LC+ N+A ++ +M + GF
Sbjct: 262 LSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGF--A 319
Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRR--------------------RIWEANHLFRLM 278
PD TY L++ CK G + R R+ +A + M
Sbjct: 320 PDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDM 379
Query: 279 LFK-GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
+ G VPDV YN LI G K + ALE+ DM KGC PN +Y + + + +
Sbjct: 380 VTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK 439
Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
ID+A ++ +M + + P + + +I A C+ R+ EA + E+ G P YT+
Sbjct: 440 IDEAYNVLNEM-SADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFN 498
Query: 398 LVCDALNAAEEPSLLDDGLRKRIRDGI 424
+ L +E LR I +G+
Sbjct: 499 SLISGLCEVDEIKHALWLLRDMISEGV 525
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 106/260 (40%), Gaps = 30/260 (11%)
Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T S ++++L A FY M + P ++ + VV+ A C V + A LL
Sbjct: 181 TFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLL 240
Query: 228 EQMELPGFRCPPDVYTYTILISSYCK-----YGMQ-------TGCRKAIRR--------- 266
M G C P+ Y LI S K +Q GC
Sbjct: 241 RDMTKHG--CVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC 298
Query: 267 ---RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
RI EA + ML +GF PD + Y L++G CK R++ A +LF + K P V
Sbjct: 299 KFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIV 354
Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
+N+ I + +D A ++ M VP +Y +I+ + G V A + L +
Sbjct: 355 IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHD 414
Query: 384 LVDGGSVPREYTYKLVCDAL 403
+ + G P Y+Y ++ D
Sbjct: 415 MRNKGCKPNVYSYTILVDGF 434
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 18/186 (9%)
Query: 198 FRCRPDVYAYNVVINALCRVGNFNK--ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255
+ C P +YNVV+ L GN +K A + + + PP ++T+ +++ ++C
Sbjct: 176 YSCEPTFKSYNVVLEILVS-GNCHKVAANVFYDMLSR---KIPPTLFTFGVVMKAFCAV- 230
Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
I A L R M G VP+ V Y LI K R+ AL+L ++M
Sbjct: 231 ----------NEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFL 280
Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
GC+P+ T+N I + I++A +M+ +M + P +Y +++ LC+ GRV
Sbjct: 281 MGCVPDAETFNDVILGLCKFDRINEAAKMVNRML-IRGFAPDDITYGYLMNGLCKIGRVD 339
Query: 376 EARDFL 381
A+D
Sbjct: 340 AAKDLF 345
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 14/181 (7%)
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
R +LE + + C P +Y +++ + C K A ++F ML +
Sbjct: 166 TRLMLEMRNV--YSCEPTFKSYNVVLEIL----VSGNCHKV-------AANVFYDMLSRK 212
Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
P + + ++ C I+ AL L DM K GC+PN V Y + I S N +++A+
Sbjct: 213 IPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEAL 272
Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
+++ +M L VP + ++ +I LC+ R+ EA + ++ G P + TY + +
Sbjct: 273 QLLEEMF-LMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNG 331
Query: 403 L 403
L
Sbjct: 332 L 332
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 14/229 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+I+ + +EG+V+ A ++ C PDV +YN+++ AL G + + L+ +M
Sbjct: 269 IIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM--FS 326
Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
+C P+V TY+ILI++ C+ G +I EA +L +LM KG PD +Y+ LI
Sbjct: 327 EKCDPNVVTYSILITTLCRDG-----------KIEEAMNLLKLMKEKGLTPDAYSYDPLI 375
Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
C+ R++ A+E + M GC+P+ V YN+ + + D+A+E+ K+ +
Sbjct: 376 AAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCS 435
Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
P SSSY + AL +G + A + E++ G P E TY + L
Sbjct: 436 -PNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCL 483
Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 57/308 (18%)
Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
S L++ L +G E +M +C P+V Y+++I LCR G +A LL+ M
Sbjct: 300 SYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLM 359
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
+ G PD Y+Y LI+++C+ G R+ A M+ G +PD+V Y
Sbjct: 360 KEKGL--TPDAYSYDPLIAAFCREG-----------RLDVAIEFLETMISDGCLPDIVNY 406
Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF---------------------- 328
N ++ CK + ++ALE+F + + GC PN +YN+
Sbjct: 407 NTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMS 466
Query: 329 -------IRYYSVVN------EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
I Y S+++ +D+A E++ M++ P+ +Y ++ C+A R+
Sbjct: 467 NGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFH-PSVVTYNIVLLGFCKAHRIE 525
Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALN----AAEEPSLLDDGLRKRIRDGI-EYRFRQ 430
+A + L +V G P E TY ++ + + AE L +D +R D I EY F++
Sbjct: 526 DAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI---DAISEYSFKR 582
Query: 431 VMKVKPIM 438
+ + P++
Sbjct: 583 LHRTFPLL 590
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 27/220 (12%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG----- 255
+PDV+AYN +IN C++ + A +L++M F PD TY I+I S C G
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDF--SPDTVTYNIMIGSLCSRGKLDLA 212
Query: 256 -------MQTGCRKAI------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
+ C+ + + EA L ML +G PD+ YN +I G
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272
Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356
CK ++RA E+ ++ KGC P+ ++YN +R + ++ ++M KM + P
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFS-EKCDP 331
Query: 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
+Y+ +I LC G++ EA + L + + G P Y+Y
Sbjct: 332 NVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSY 371
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 15/208 (7%)
Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F R + +FL+ M +G L + ++ L + G ++AL F ++ + C
Sbjct: 377 AFCREGRLDVAIEFLETMI--SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGC 434
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
P+ +YN + +AL G+ +A ++ +M G PD TY +IS C+ GM
Sbjct: 435 SPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGI--DPDEITYNSMISCLCREGM---- 488
Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
+ EA L M F P VV YN ++ G CK +RIE A+ + + M GC P
Sbjct: 489 -------VDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRP 541
Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
N TY I +A+E+ +
Sbjct: 542 NETTYTVLIEGIGFAGYRAEAMELANDL 569
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 15/185 (8%)
Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
CR GN+ ++ LLE M G+ PDV T LI + R I +A +
Sbjct: 100 CRSGNYIESLHLLETMVRKGYN--PDVILCTKLIKGFFTL-----------RNIPKAVRV 146
Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
+ L K PDV AYN LI+G CK RI+ A + D M K P+ VTYN I
Sbjct: 147 MEI-LEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCS 205
Query: 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394
++D A++++ ++ + ++ PT +YT +I A G V EA + E++ G P +
Sbjct: 206 RGKLDLALKVLNQLLS-DNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMF 264
Query: 395 TYKLV 399
TY +
Sbjct: 265 TYNTI 269
Score = 39.7 bits (91), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
C++ +L L + M +KG P+ + I+ + + I KA+ +M ++ G P
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKF--GQPD 157
Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
+Y +I+ C+ R+ +A L + P TY ++ +L
Sbjct: 158 VFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSL 203
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 14/228 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L VL + G++ EA+ F +MK+FR P + N +++ ++G + + + M G
Sbjct: 198 LFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAG 257
Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
R P V+TY I+I CK G + A LF M F+G VPD V YN +I
Sbjct: 258 AR--PTVFTYNIMIDCMCKEG-----------DVEAARGLFEEMKFRGLVPDTVTYNSMI 304
Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
DG K R++ + F++M C P+ +TYN+ I + ++ +E R+M+ N
Sbjct: 305 DGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKG-NGL 363
Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
P SY+ ++ A C+ G + +A F ++ G VP EYTY + DA
Sbjct: 364 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 411
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 160/388 (41%), Gaps = 47/388 (12%)
Query: 39 TQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRH---------------------RTP 77
T P + V LK P+ F+ + + GF+H +
Sbjct: 105 TLAPIWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSV 164
Query: 78 LRQRILKKEAYNIAN------NVLVLGPAAYRDPQKVTLGLNKATEFYHWVERF--FDFF 129
L++ +L K ++ + NV V G + V + L E + F F
Sbjct: 165 LKEMVLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVF 224
Query: 130 HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEAL 189
+C + FA+ + F KDM G G T + +I + +EG V A
Sbjct: 225 PKTRSCNGLLHRFAKLGKTDDVKRFFKDMI--GAGARPTVFTYNIMIDCMCKEGDVEAAR 282
Query: 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249
F MK PD YN +I+ +VG + E+M+ C PDV TY LI+
Sbjct: 283 GLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMK--DMCCEPDVITYNALIN 340
Query: 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
+CK+G ++ +R M G P+VV+Y+ L+D CK +++A++
Sbjct: 341 CFCKFG-----------KLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKF 389
Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHAL 368
+ DM + G +PN TY S I + + A + +M L GV + +YT +I L
Sbjct: 390 YVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEM--LQVGVEWNVVTYTALIDGL 447
Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTY 396
C+A R+ EA + ++ G +P +Y
Sbjct: 448 CDAERMKEAEELFGKMDTAGVIPNLASY 475
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 137/310 (44%), Gaps = 45/310 (14%)
Query: 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFY 193
CKE + ARG ++M RG LV T + +I G+ G +++ + F
Sbjct: 273 CKEGDVEAARG--------LFEEMKFRG---LVPDTVTYNSMIDGFGKVGRLDDTVCFFE 321
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
MK C PDV YN +IN C+ G +M+ G + P+V +Y+ L+ ++CK
Sbjct: 322 EMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLK--PNVVSYSTLVDAFCK 379
Query: 254 YGMQTGCRK---AIRR------------------RIWEANHLFRL---MLFKGFVPDVVA 289
GM K +RR +I + FRL ML G +VV
Sbjct: 380 EGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVT 439
Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
Y LIDG C R++ A ELF M+ G IPN +YN+ I + +D+A+E++ +++
Sbjct: 440 YTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELK 499
Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----N 404
G+ P Y I LC ++ A+ + E+ + G Y + DA N
Sbjct: 500 --GRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGN 557
Query: 405 AAEEPSLLDD 414
E LLD+
Sbjct: 558 PTEGLHLLDE 567
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 51/264 (19%)
Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+F ++M +GNG S + L+ +EG++ +A+ + M++ P+ Y Y +I+
Sbjct: 353 EFYREM--KGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 410
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
A C++GN + A L +M G +V TYT LI C R+ EA
Sbjct: 411 ANCKIGNLSDAFRLGNEMLQVGVEW--NVVTYTALIDGLCD-----------AERMKEAE 457
Query: 273 HLFRLM--------------LFKGFV---------------------PDVVAYNCLIDGC 297
LF M L GFV PD++ Y I G
Sbjct: 458 ELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGL 517
Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
C +IE A + ++M + G N + Y + + Y + + ++ +M+ L+ V T
Sbjct: 518 CSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEV-T 576
Query: 358 SSSYTPIIHALCEAGRVLEARDFL 381
++ +I LC+ V +A D+
Sbjct: 577 VVTFCVLIDGLCKNKLVSKAVDYF 600
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 93/209 (44%), Gaps = 13/209 (6%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ A MK+ + + Y +++A + GN + LL++M+ V T+
Sbjct: 523 IEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVT--VVTF 580
Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
+LI CK K + + + ++ R+ G + + +IDG CK ++E
Sbjct: 581 CVLIDGLCK-------NKLVSKAV---DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVE 630
Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
A LF+ M +KG +P+R Y S + + +A+ + KM + + +YT +
Sbjct: 631 AATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDL-LAYTSL 689
Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPRE 393
+ L ++ +AR FL E++ G P E
Sbjct: 690 VWGLSHCNQLQKARSFLEEMIGEGIHPDE 718
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 12/176 (6%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T L+ + G E L MK+ V + V+I+ LC+ +KA ++
Sbjct: 546 TTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRIS- 604
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
F + +T +I CK ++ A LF M+ KG VPD AY
Sbjct: 605 NDFGLQANAAIFTAMIDGLCK-----------DNQVEAATTLFEQMVQKGLVPDRTAYTS 653
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
L+DG K + AL L D M + G + + Y S + S N++ KA + +M
Sbjct: 654 LMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 709
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 19/224 (8%)
Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK- 196
M F GN +GL L D + + E VT + LI L + LV++A+ F R+
Sbjct: 549 MDAYFKSGNPTEGL--HLLDEMKELDIE-VTVVTFCVLIDGLCKNKLVSKAVDYFNRISN 605
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
F + + + +I+ LC+ A L EQM G PD YT L+ K G
Sbjct: 606 DFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL--VPDRTAYTSLMDGNFKQG- 662
Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
+ EA L M G D++AY L+ G ++++A ++M +
Sbjct: 663 ----------NVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGE 712
Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
G P+ V S ++ + + ID+A+E+ + + H + TS +
Sbjct: 713 GIHPDEVLCISVLKKHYELGCIDEAVELQSYL--MKHQLLTSDN 754
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
C+P +++ + +++AI+ KM+ P + S ++H + G+ +
Sbjct: 188 CVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRF-RVFPKTRSCNGLLHRFAKLGKTDDV 246
Query: 378 RDFLAELVDGGSVPREYTYKLVCDAL 403
+ F +++ G+ P +TY ++ D +
Sbjct: 247 KRFFKDMIGAGARPTVFTYNIMIDCM 272
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 118 bits (296), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 104/201 (51%), Gaps = 14/201 (6%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
RPD YN +++A R N + A + E ME RC PD++TY +IS Y + G+
Sbjct: 294 RPDAITYNTLLSACSRDSNLDGAVKVFEDME--AHRCQPDLWTYNAMISVYGRCGLAA-- 349
Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
EA LF + KGF PD V YN L+ + E+ E++ M K G
Sbjct: 350 ---------EAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGK 400
Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
+ +TYN+ I Y ++D A+++ + M+ L+ P + +YT +I +L +A R +EA
Sbjct: 401 DEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAAL 460
Query: 381 LAELVDGGSVPREYTYK-LVC 400
++E++D G P TY L+C
Sbjct: 461 MSEMLDVGIKPTLQTYSALIC 481
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 17/251 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ + ++ A+ F M+ RC+PD++ YN +I+ R G +A L ++EL G
Sbjct: 303 LLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKG 362
Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
F PD TY L+ ++ + R + +++ M GF D + YN +I
Sbjct: 363 FF--PDAVTYNSLLYAFAR-----------ERNTEKVKEVYQQMQKMGFGKDEMTYNTII 409
Query: 295 DGCCKTYRIERALELFDDMNK-KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
K +++ AL+L+ DM G P+ +TY I N +A +M +M L+
Sbjct: 410 HMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEM--LDV 467
Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412
G+ PT +Y+ +I +AG+ EA D + ++ G+ P Y ++ D L E
Sbjct: 468 GIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKA 527
Query: 413 DDGLRKRIRDG 423
R I DG
Sbjct: 528 WGLYRDMISDG 538
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 16/225 (7%)
Query: 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187
FF + +T + FAR N + + + + M + G G+ T + +I + G++G ++
Sbjct: 363 FFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNT--IIHMYGKQGQLDL 420
Query: 188 ALATFYRMKQFRCR-PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
AL + MK R PD Y V+I++L + +A L+ +M G + P + TY+
Sbjct: 421 ALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIK--PTLQTYSA 478
Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
LI Y K G + EA F ML G PD +AY+ ++D + +A
Sbjct: 479 LICGYAKAGKRE-----------EAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKA 527
Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
L+ DM G P+ Y I N D + +R M+ L
Sbjct: 528 WGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEEL 572
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 13/228 (5%)
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
V ++ VLG + A+ F R + V YN ++ R G F+KA+ L++ M
Sbjct: 194 VAAILGVLGRWNQESLAVEIFTRAEP-TVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMR 252
Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
G C PD+ ++ LI++ K G T A L ++ G PD + YN
Sbjct: 253 QRG--CVPDLISFNTLINARLKSGGLTPNL---------AVELLDMVRNSGLRPDAITYN 301
Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
L+ C + ++ A+++F+DM C P+ TYN+ I Y +A + +++ L
Sbjct: 302 TLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELE-L 360
Query: 352 NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
P + +Y +++A + ++ ++ G E TY +
Sbjct: 361 KGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTI 408
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 114/265 (43%), Gaps = 22/265 (8%)
Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
R +G + L+ + G A A F M + P V + N++++ALC G
Sbjct: 779 RQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRL 838
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
+ ++E+++ GF+ + +++ ++ + G I+E ++ M
Sbjct: 839 EELYVVVEELQDMGFKISKS--SILLMLDAFARAG-----------NIFEVKKIYSSMKA 885
Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
G++P + Y +I+ CK R+ A + +M + +NS ++ Y+ + + K
Sbjct: 886 AGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKK 945
Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
+++ ++++ P ++Y +I C R E + ++ + G P+ TYK +
Sbjct: 946 TVQVYQRIKETGLE-PDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLI 1004
Query: 401 DA------LNAAEE--PSLLDDGLR 417
A L AE+ LL GL+
Sbjct: 1005 SAFGKQKCLEQAEQLFEELLSKGLK 1029
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 106/282 (37%), Gaps = 52/282 (18%)
Query: 155 LKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214
L+DM G ++ SS+ ++ G + E + MK P + Y ++I L
Sbjct: 848 LQDM-----GFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELL 902
Query: 215 CRVGNFNKARFLLEQMELPGFRCP---------------------------------PDV 241
C+ A ++ +ME F+ PD
Sbjct: 903 CKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDE 962
Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301
TY LI YC+ RR E L + M G P + Y LI K
Sbjct: 963 TTYNTLIIMYCR-----------DRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQK 1011
Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSS 360
+E+A +LF+++ KG +R Y++ ++ KA ++++ M+ N G+ PT ++
Sbjct: 1012 CLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMK--NAGIEPTLAT 1069
Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
++ + +G EA L+ L D Y V DA
Sbjct: 1070 MHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDA 1111
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 73/182 (40%), Gaps = 13/182 (7%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI G++ + +A F + + D Y+ ++ G+ +KA LL+ M+ G
Sbjct: 1003 LISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAG 1062
Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
P + T +L+ SY G K + L L Y+ +I
Sbjct: 1063 IE--PTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTL-----------PYSSVI 1109
Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
D ++ +E +M K+G P+ + F+R S E + + +++ ++++
Sbjct: 1110 DAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLKALEDIGFD 1169
Query: 355 VP 356
+P
Sbjct: 1170 LP 1171
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 145/317 (45%), Gaps = 42/317 (13%)
Query: 170 SSVTC--LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
S+++C L+ L +E + + M + + +P+V+ +NVVINALC+ G NKAR ++
Sbjct: 187 SALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVM 246
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA---------------------IRR 266
E M++ G C P+V +Y LI YCK G KA +
Sbjct: 247 EDMKVYG--CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILID 304
Query: 267 RIWEANHL------FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
W+ ++L F+ ML + P+V++YN LI+G C +I A+ + D M G P
Sbjct: 305 GFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQP 364
Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
N +TYN+ I + + + +A++M ++ VPT+ Y +I A C+ G++ +
Sbjct: 365 NLITYNALINGFCKNDMLKEALDMFGSVKG-QGAVPTTRMYNMLIDAYCKLGKIDDGFAL 423
Query: 381 LAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRKRIRDGIEYRF------RQ 430
E+ G VP TY + L N L D K + D + + R+
Sbjct: 424 KEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRK 483
Query: 431 VMKVKPIMKHKELLKCG 447
K M KE+ K G
Sbjct: 484 GESRKAAMLLKEMSKMG 500
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 14/227 (6%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
LI + ++ EAL F +K P YN++I+A C++G + L E+ME
Sbjct: 370 NALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMER 429
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
G PDV TY LI+ C+ G I A LF + KG +PD+V ++
Sbjct: 430 EGI--VPDVGTYNCLIAGLCRNG-----------NIEAAKKLFDQLTSKG-LPDLVTFHI 475
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
L++G C+ +A L +M+K G P +TYN ++ Y + A M +M+
Sbjct: 476 LMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKER 535
Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
+SY ++ + G++ +A L E+++ G VP TY++V
Sbjct: 536 RLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 39/310 (12%)
Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
T + T LIK L +EAL M++ +P+++ Y V+I++LC F KAR LL
Sbjct: 322 TVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELL 381
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI----------------------- 264
QM G P+V TY LI+ YCK GM +
Sbjct: 382 GQMLEKGLM--PNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYC 439
Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
+ + +A + ML + +PDVV YN LIDG C++ + A L MN +G +P++ T
Sbjct: 440 KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWT 499
Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAE 383
Y S I +++A ++ ++ GV P YT +I C+AG+V EA L +
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLE--QKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEK 557
Query: 384 LVDGGSVPREYTYKLVCDALNA---AEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKH 440
++ +P T+ + L A +E +LL++ K ++ G++ + I+ H
Sbjct: 558 MLSKNCLPNSLTFNALIHGLCADGKLKEATLLEE---KMVKIGLQ----PTVSTDTILIH 610
Query: 441 KELLKCGEID 450
+ LLK G+ D
Sbjct: 611 R-LLKDGDFD 619
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 123/272 (45%), Gaps = 48/272 (17%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A+ +M + + PDV YN +I+ CR GNF+ A LL M G PD +TY
Sbjct: 443 VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGL--VPDQWTY 500
Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
T +I S CK +R+ EA LF + KG P+VV Y LIDG CK +++
Sbjct: 501 TSMIDSLCK-----------SKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVD 549
Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM---------------- 348
A + + M K C+PN +T+N+ I ++ +A + KM
Sbjct: 550 EAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILI 609
Query: 349 -----------------QNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
Q L+ G P + +YT I C GR+L+A D +A++ + G
Sbjct: 610 HRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVS 669
Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
P +TY + + + D L KR+RD
Sbjct: 670 PDLFTYSSLIKGYGDLGQTNFAFDVL-KRMRD 700
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 148/332 (44%), Gaps = 39/332 (11%)
Query: 89 NIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEM---------- 138
++ + V + P+ + L A F HW+ + + H+ + +
Sbjct: 80 SLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYV 139
Query: 139 GIVFA------RGNNVKGLWDFLKDMSRRGNG----ELVTTSSVTC---LIKVLGEEGLV 185
G+VF + + G ++ D+ R+ N EL + C L+ L GLV
Sbjct: 140 GVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLV 199
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+E + M + + P++Y YN ++N C++GN +A + ++ G PD +TYT
Sbjct: 200 DEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGL--DPDFFTYT 257
Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
LI YC+ R+ + A +F M KG + VAY LI G C RI+
Sbjct: 258 SLIMGYCQ-----------RKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDE 306
Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPI 364
A++LF M C P TY I+ +A+ ++++M+ G+ P +YT +
Sbjct: 307 AMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEET--GIKPNIHTYTVL 364
Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
I +LC + +AR+ L ++++ G +P TY
Sbjct: 365 IDSLCSQCKFEKARELLGQMLEKGLMPNVITY 396
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 14/197 (7%)
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266
YN ++N+L R G ++ + + ME+ + P++YTY +++ YCK G
Sbjct: 186 YNTLLNSLARFGLVDEMKQVY--MEMLEDKVCPNIYTYNKMVNGYCKLG----------- 232
Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
+ EAN ++ G PD Y LI G C+ ++ A ++F++M KGC N V Y
Sbjct: 233 NVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYT 292
Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
I V ID+A+++ KM++ + PT +YT +I +LC + R EA + + E+ +
Sbjct: 293 HLIHGLCVARRIDEAMDLFVKMKD-DECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEE 351
Query: 387 GGSVPREYTYKLVCDAL 403
G P +TY ++ D+L
Sbjct: 352 TGIKPNIHTYTVLIDSL 368
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 39/264 (14%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L +G + EA +M + +P V ++I+ L + G+F+ A +QM G
Sbjct: 573 LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG 632
Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
+ PD +TYT I +YC+ G R+ +A + M G PD+ Y+ LI
Sbjct: 633 TK--PDAHTYTTFIQTYCREG-----------RLLDAEDMMAKMRENGVSPDLFTYSSLI 679
Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY------------------SVVN 336
G + A ++ M GC P++ T+ S I++ S +
Sbjct: 680 KGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMM 739
Query: 337 EIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELV-DGGSVPREY 394
E D +E++ KM + H V P + SY +I +CE G + A + + G P E
Sbjct: 740 EFDTVVELLEKM--VEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSEL 797
Query: 395 TYKLV----CDALNAAEEPSLLDD 414
+ + C E ++DD
Sbjct: 798 VFNALLSCCCKLKKHNEAAKVVDD 821
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI + G V+EA +M C P+ +N +I+ LC G +A L E+M
Sbjct: 536 TALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVK 595
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
G + P V T TILI K G A F+ ML G PD Y
Sbjct: 596 IGLQ--PTVSTDTILIHRLLKDG-----------DFDHAYSRFQQMLSSGTKPDAHTYTT 642
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
I C+ R+ A ++ M + G P+ TY+S I+ Y + + + A +++++M++
Sbjct: 643 FIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG 702
Query: 353 HGVPTSSSYTPIIHALCE 370
P+ ++ +I L E
Sbjct: 703 -CEPSQHTFLSLIKHLLE 719
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 25/161 (15%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M + P+ +Y +I +C VGN A + + M+ P ++ + L+S CK
Sbjct: 750 KMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSEL-VFNALLSCCCK 808
Query: 254 YGMQTGCRKAIRRRIW------------------------EANHLFRLMLFKGFVPDVVA 289
K + I +F+ +L G+ D +A
Sbjct: 809 LKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELA 868
Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
+ +IDG K +E ELF+ M K GC + TY+ I
Sbjct: 869 WKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIE 909
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 38/189 (20%)
Query: 153 DFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211
D + M G + +L T SS LIK G+ G N A RM+ C P + + +I
Sbjct: 658 DMMAKMRENGVSPDLFTYSS---LIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLI 714
Query: 212 N---------------ALCRVGN---FNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
LC + N F+ LLE+M P+ +Y LI C+
Sbjct: 715 KHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKM--VEHSVTPNAKSYEKLILGICE 772
Query: 254 YGMQTGCRKAIRRRIWEA--NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
G R+ E +H+ R +G P + +N L+ CCK + A ++ D
Sbjct: 773 VG---------NLRVAEKVFDHMQR---NEGISPSELVFNALLSCCCKLKKHNEAAKVVD 820
Query: 312 DMNKKGCIP 320
DM G +P
Sbjct: 821 DMICVGHLP 829
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 145/301 (48%), Gaps = 30/301 (9%)
Query: 87 AYNIANNVLVLGPAAYRDPQKVTLGL--------NKATEFYHWVERFFDFFHNEMTCKEM 138
A +I +L LG +P +VT+G N+ ++ V++ + +
Sbjct: 139 ALSILGKMLKLG----YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 194
Query: 139 GIV--FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196
I+ + V +DF K++ R+G V T T L+ L ++A M
Sbjct: 195 AIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT--YTALVNGLCNSSRWSDAARLLSDMI 252
Query: 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256
+ + P+V Y+ +++A + G +A+ L E+M PD+ TY+ LI+ C
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEM--VRMSIDPDIVTYSSLINGLC---- 306
Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
+ RI EAN +F LM+ KG + DVV+YN LI+G CK R+E ++LF +M+++
Sbjct: 307 -------LHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQR 359
Query: 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376
G + N VTYN+ I+ + ++DKA E +M P +Y ++ LC+ G + +
Sbjct: 360 GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGIS-PDIWTYNILLGGLCDNGELEK 418
Query: 377 A 377
A
Sbjct: 419 A 419
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 14/210 (6%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M+ R D+Y +N+VIN C + A +L +M G+ PD T L++ +C+
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYE--PDRVTIGSLVNGFCR 167
Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
R R+ +A L M+ G+ PD+VAYN +ID CKT R+ A + F ++
Sbjct: 168 -----------RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI 216
Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
+KG PN VTY + + + A ++ M P +Y+ ++ A + G+
Sbjct: 217 ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGK 275
Query: 374 VLEARDFLAELVDGGSVPREYTYKLVCDAL 403
VLEA++ E+V P TY + + L
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVTYSSLINGL 305
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 119/294 (40%), Gaps = 38/294 (12%)
Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L DM ++ V T S L+ + G V EA F M + PD+ Y+ +IN
Sbjct: 247 LLSDMIKKKITPNVITYSA--LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR------- 266
LC ++A + + M G C DV +Y LI+ +CK K R
Sbjct: 305 LCLHDRIDEANQMFDLMVSKG--CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLV 362
Query: 267 -----------------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
+ +A F M F G PD+ YN L+ G C +E+AL +
Sbjct: 363 SNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVI 422
Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
F+DM K+ + VTY + IR ++++A + + +L P +YT ++ LC
Sbjct: 423 FEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL-SLKGLKPDIVTYTTMMSGLC 481
Query: 370 EAGRVLEARDFLAELVDGGSVPREYTY---------KLVCDALNAAEEPSLLDD 414
G + E ++ G + + T +L+ L+ PSLL D
Sbjct: 482 TKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKD 535
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 109/219 (49%), Gaps = 16/219 (7%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+N+A+ F M + R P + +N +++A+ ++ ++ L ++ME+ G R D+YT+
Sbjct: 66 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIR--NDLYTF 123
Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
I+I+ +C C + + A + ML G+ PD V L++G C+ R+
Sbjct: 124 NIVINCFC------CCFQ-----VSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVS 172
Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
A+ L D M + G P+ V YN+ I ++ A + ++++ G+ P +YT
Sbjct: 173 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER--KGIRPNVVTYTA 230
Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
+++ LC + R +A L++++ P TY + DA
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDA 269
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 134/269 (49%), Gaps = 20/269 (7%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNG-ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ V D L M + G G ++VT +S LI L G ++A M +
Sbjct: 196 LCKSKQVDNALDLLNRMEKDGIGPDVVTYNS---LISGLCSSGRWSDATRMVSCMTKREI 252
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
PDV+ +N +I+A + G ++A E+M PD+ TY++LI C Y
Sbjct: 253 YPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL--DPDIVTYSLLIYGLCMYS----- 305
Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
R+ EA +F M+ KG PDVV Y+ LI+G CK+ ++E ++LF +M+++G +
Sbjct: 306 ------RLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVR 359
Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
N VTY I+ Y +++ A E+ R+M + GV P +Y ++H LC+ G++ +A
Sbjct: 360 NTVTYTILIQGYCRAGKLNVAEEIFRRM--VFCGVHPNIITYNVLLHGLCDNGKIEKALV 417
Query: 380 FLAELVDGGSVPREYTYKLVCDALNAAEE 408
LA++ G TY ++ + A E
Sbjct: 418 ILADMQKNGMDADIVTYNIIIRGMCKAGE 446
Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 136/321 (42%), Gaps = 32/321 (9%)
Query: 119 YHWVE-RFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
Y W + + HN TC + F R + + FL M + G+ + T L+
Sbjct: 102 YLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVT--FGSLLN 159
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
V +AL F +M +P+V YN +I+ LC+ + A LL +ME G
Sbjct: 160 GFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGI-- 217
Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAI------------------------RRRIWEANH 273
PDV TY LIS C G + + + R+ EA
Sbjct: 218 GPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEE 277
Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
+ M+ + PD+V Y+ LI G C R++ A E+F M KGC P+ VTY+ I Y
Sbjct: 278 FYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYC 337
Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
+++ +++ +M V + +YT +I C AG++ A + +V G P
Sbjct: 338 KSKKVEHGMKLFCEMSQ-RGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNI 396
Query: 394 YTYKLVCDAL--NAAEEPSLL 412
TY ++ L N E +L+
Sbjct: 397 ITYNVLLHGLCDNGKIEKALV 417
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 108/218 (49%), Gaps = 14/218 (6%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++++L F+ M Q R P + ++ +++A+ ++ ++ +L EQM++ G P ++ T
Sbjct: 62 LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGI--PHNLCTC 119
Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
IL++ +C+ ++ A M+ G P +V + L++G C+ R+
Sbjct: 120 NILLNCFCRCS-----------QLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVY 168
Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
AL +FD M G PN V YN+ I ++D A++++ +M+ G P +Y +
Sbjct: 169 DALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIG-PDVVTYNSL 227
Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
I LC +GR +A ++ + P +T+ + DA
Sbjct: 228 ISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDA 265
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 131/280 (46%), Gaps = 18/280 (6%)
Query: 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
G N+A F+ W + H+ T M V + N +W+ + +M++ +LVT
Sbjct: 145 GWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLD 204
Query: 171 SVTCLIKVLGEEGLVNEALATFYRM-KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+++ +++ L + G N+A+ F M K + + D A N +++AL + + A +
Sbjct: 205 TMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAH----E 260
Query: 230 MELPGFRC-PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
+ L F PD T+ ILI +CK R+ +A + LM F PDVV
Sbjct: 261 VFLKLFDTIKPDARTFNILIHGFCK-----------ARKFDDARAMMDLMKVTEFTPDVV 309
Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
Y ++ CK R E+ ++M + GC PN VTY + ++ +A+ + KM
Sbjct: 310 TYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKM 369
Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
+ + VP + Y+ +IH L + GR +A + ++ + G
Sbjct: 370 KE-DGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQG 408
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 122/304 (40%), Gaps = 53/304 (17%)
Query: 93 NVLVLGPAAYR--DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKG 150
N+L+ G R D + + L K TEF V + F E CKE F R N
Sbjct: 277 NILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFV--EAYCKEGD--FRRVN---- 328
Query: 151 LWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209
+ L++M G N +VT T ++ LG+ V EAL + +MK+ C PD Y+
Sbjct: 329 --EMLEEMRENGCNPNVVT---YTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSS 383
Query: 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269
+I+ L + G F A + E M G R DV Y +IS+ + + ++R
Sbjct: 384 LIHILSKTGRFKDAAEIFEDMTNQGVR--RDVLVYNTMISAALHHSRDEMALRLLKRMED 441
Query: 270 EANH---------------------------LFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
E L M+ DV Y LI G C + +
Sbjct: 442 EEGESCSPNVETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGK 501
Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA--IEMMRKMQNLNHGVPTSSS 360
+E A F++ +KG +P T +V+E++K E K+Q+L S
Sbjct: 502 VEEACLFFEEAVRKGMVPRDSTCK------MLVDELEKKNMAEAKLKIQSLVQSKTMIDS 555
Query: 361 YTPI 364
++P+
Sbjct: 556 HSPL 559
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 282 GFVPDVVAYNCLIDGCCKTYRIERA----LELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
G D +A N L+D K IE A L+LFD + P+ T+N I + +
Sbjct: 234 GVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIK-----PDARTFNILIHGFCKARK 288
Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
D A MM M+ + P +YT + A C+ G + L E+ + G P TY
Sbjct: 289 FDDARAMMDLMK-VTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYT 347
Query: 398 LVCDALNAAEE 408
+V +L +++
Sbjct: 348 IVMHSLGKSKQ 358
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 111/216 (51%), Gaps = 14/216 (6%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A + F M +F P++Y YN +I+ C+ GN +A LL +ME PDV+TYTIL
Sbjct: 323 ARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEME--SLNLSPDVFTYTIL 380
Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
I+ C I ++ EAN LF+ M + P YN LI G CK Y +E+AL
Sbjct: 381 INGLC-----------IEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQAL 429
Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367
+L +M G PN +T+++ I Y V +I A+ + +M + VP +YT +I A
Sbjct: 430 DLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEM-TIKGIVPDVVTYTALIDA 488
Query: 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
+ + EA +++++ G P ++T+ + D
Sbjct: 489 HFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGF 524
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 14/216 (6%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
++GL ++ M +P+VY Y + I LCR +A + E M+ G P+
Sbjct: 211 KQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVL--PN 268
Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
+YTY+ +I YCK G + +A L++ +L +P+VV + L+DG CK
Sbjct: 269 LYTYSAMIDGYCKTG-----------NVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKA 317
Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
+ A LF M K G PN YN I + + +A+ ++ +M++LN P +
Sbjct: 318 RELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLS-PDVFT 376
Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
YT +I+ LC +V EA ++ + P TY
Sbjct: 377 YTILINGLCIEDQVAEANRLFQKMKNERIFPSSATY 412
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 109/264 (41%), Gaps = 31/264 (11%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI L E V EA F +MK R P YN +I+ C+ N +A L +M
Sbjct: 378 TILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTA 437
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
G P++ T++ LI YC R I A L+ M KG VPDVV Y
Sbjct: 438 SGVE--PNIITFSTLIDGYCNV-----------RDIKAAMGLYFEMTIKGIVPDVVTYTA 484
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
LID K ++ AL L+ DM + G PN T+ + + + AI+ ++ N
Sbjct: 485 LIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQE-NNQQ 543
Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY---------------- 396
+T +I LC+ G +L A F +++ G P +Y
Sbjct: 544 RSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDT 603
Query: 397 -KLVCDALNAAEEPSLLDDGLRKR 419
L CD + P+LL + L R
Sbjct: 604 MMLQCDMIKTGILPNLLVNQLLAR 627
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 16/203 (7%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
PDV+ Y V+ + G ++K LL++M G + P+VY YTI I C+
Sbjct: 197 PDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIK--PNVYIYTIYILDLCR-------- 246
Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
++ EA +F LM G +P++ Y+ +IDG CKT + +A L+ ++ +PN
Sbjct: 247 ---DNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPN 303
Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
V + + + + E+ A + M + GV P Y +IH C++G +LEA
Sbjct: 304 VVVFGTLVDGFCKARELVTARSLFVHM--VKFGVDPNLYVYNCLIHGHCKSGNMLEAVGL 361
Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
L+E+ P +TY ++ + L
Sbjct: 362 LSEMESLNLSPDVFTYTILINGL 384
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 14/224 (6%)
Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
++++ LI +E + +AL M P++ ++ +I+ C V + A L
Sbjct: 408 SSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLY 467
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
+M + G PDV TYT LI ++ K + ++A+R L+ ML G P+
Sbjct: 468 FEMTIKGI--VPDVVTYTALIDAHFK---EANMKEALR--------LYSDMLEAGIHPND 514
Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
+ CL+DG K R+ A++ + + N++ N V + I I +A
Sbjct: 515 HTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSD 574
Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
M++ P SY ++ + R+ + +++ G +P
Sbjct: 575 MRSCGI-TPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILP 617
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 66/181 (36%), Gaps = 26/181 (14%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ A+ ++ M PDV Y +I+A + N +A L M G P+ +T+
Sbjct: 460 IKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIH--PNDHTF 517
Query: 245 TILISSYCKYG-------------MQTGCRKAI-----------RRRIWEANHLFRLMLF 280
L+ + K G Q C + I A+ F M
Sbjct: 518 ACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRS 577
Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
G PD+ +Y ++ G + RI + L DM K G +PN + R+Y +
Sbjct: 578 CGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLLVNQLLARFYQANGYVKS 637
Query: 341 A 341
A
Sbjct: 638 A 638
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 140/301 (46%), Gaps = 27/301 (8%)
Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL-VTTSSVTCLI 176
F+ WV F H E + M R N+ +FL + RR NG + + LI
Sbjct: 87 FFDWVSNK-GFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLI 145
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
+ G GL E++ F MKQ P V +N +++ L + G A L ++M +
Sbjct: 146 RSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMR-RTYG 204
Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
PD YT+ LI+ +CK M + EA +F+ M PDVV YN +IDG
Sbjct: 205 VTPDSYTFNTLINGFCKNSM-----------VDEAFRIFKDMELYHCNPDVVTYNTIIDG 253
Query: 297 CCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
C+ +++ A + M KK PN V+Y + +R Y + EID+A+ + M L+ G
Sbjct: 254 LCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDM--LSRG 311
Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV--PREYTYKLV----CDA--LNA 405
+ P + +Y +I L EA R E +D L D + P T+ ++ CDA L+A
Sbjct: 312 LKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDA 371
Query: 406 A 406
A
Sbjct: 372 A 372
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 132/301 (43%), Gaps = 27/301 (8%)
Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
+ I+ RG G+ L D RR G + + LI + +V+EA F M+
Sbjct: 180 LSILLKRGRT--GMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMEL 237
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
+ C PDV YN +I+ LCR G A +L M P+V +YT L+ YC
Sbjct: 238 YHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYC----- 292
Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
+++ I EA +F ML +G P+ V YN LI G + +R + ++ N
Sbjct: 293 ------MKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAF 346
Query: 318 CI--PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375
P+ T+N I+ + +D A+++ ++M N+ P S+SY+ +I LC
Sbjct: 347 TTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLH-PDSASYSVLIRTLCMRNEFD 405
Query: 376 EARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS---LLDDGLRKRIRDGIEYRFRQVM 432
A EL + + K C L AA P L +G K+ E FRQ+M
Sbjct: 406 RAETLFNELFEKEVL----LGKDECKPLAAAYNPMFEYLCANGKTKQ----AEKVFRQLM 457
Query: 433 K 433
K
Sbjct: 458 K 458
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 27/237 (11%)
Query: 148 VKGL-----WDFLKDMSRRGNGELVTTSSVTC----LIKVLGEEGLVNEALATFYRMKQF 198
+KGL +D +KD+ GN T + C LIK + G ++ A+ F M
Sbjct: 323 IKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNM 382
Query: 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQM-----ELPGFRCPPDVYTYTILISSYCK 253
+ PD +Y+V+I LC F++A L ++ L C P Y + C
Sbjct: 383 KLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCA 442
Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
G + +A +FR ++ +G V D +Y LI G C+ + + A EL M
Sbjct: 443 NG-----------KTKQAEKVFRQLMKRG-VQDPPSYKTLITGHCREGKFKPAYELLVLM 490
Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370
++ +P+ TY I + E A + +++M ++ +P ++++ ++ L +
Sbjct: 491 LRREFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRSSY-LPVATTFHSVLAELAK 546
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 115 bits (287), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 137/290 (47%), Gaps = 53/290 (18%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-- 230
T +I L + G VN AL+ F +M+ + RPDV Y ++N LC G + A LL M
Sbjct: 181 TTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTK 240
Query: 231 -------------------------------ELPGFRCPPDVYTYTILISSYCKYGMQTG 259
E+ P+++TYT LI+ +C G
Sbjct: 241 RKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFC----MEG 296
Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
C + EA +F LM KG PDVVAY LI+G CK +++ A+++F +M++KG
Sbjct: 297 C-------VDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLT 349
Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEAR 378
N +TY + I+ + V + + A E+ M ++ GVP + +Y ++H LC G+V +A
Sbjct: 350 GNTITYTTLIQGFGQVGKPNVAQEVFSHM--VSRGVPPNIRTYNVLLHCLCYNGKVKKAL 407
Query: 379 DFLAELVD---GGSVPREYTYKLVCDAL--NAAEEPSLLD-DGLRKRIRD 422
++ G P +TY ++ L N E +L+ + +RKR D
Sbjct: 408 MIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMD 457
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 133/301 (44%), Gaps = 18/301 (5%)
Query: 130 HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLVNEA 188
H+ TC + F + + FL M + G ++VT +S LI + EA
Sbjct: 105 HDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTS---LINGFCLGNRMEEA 161
Query: 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248
++ +M + +PDV Y +I++LC+ G+ N A L +QME G R PDV YT L+
Sbjct: 162 MSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIR--PDVVMYTSLV 219
Query: 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALE 308
+ C G R +A+ L R M + PDV+ +N LID K + A E
Sbjct: 220 NGLCNSG-----------RWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEE 268
Query: 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368
L+++M + PN TY S I + + +D+A +M M+ P +YT +I+
Sbjct: 269 LYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET-KGCFPDVVAYTSLINGF 327
Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRF 428
C+ +V +A E+ G TY + +P++ + + G+
Sbjct: 328 CKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNI 387
Query: 429 R 429
R
Sbjct: 388 R 388
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 32/246 (13%)
Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ T LI EG V+EA FY M+ C PDV AY +IN C+ + A + +M
Sbjct: 284 TYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEM 343
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA--------NHLFR------ 276
G + TYT LI + + G ++ + N L
Sbjct: 344 SQKGL--TGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNG 401
Query: 277 -----LMLFK--------GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
LM+F+ G P++ YN L+ G C ++E+AL +F+DM K+ +
Sbjct: 402 KVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGII 461
Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
TY I+ ++ A+ + + + GV P +YT +I L G EA
Sbjct: 462 TYTIIIQGMCKAGKVKNAVNLFCSLP--SKGVKPNVVTYTTMISGLFREGLKHEAHVLFR 519
Query: 383 ELVDGG 388
++ + G
Sbjct: 520 KMKEDG 525
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 7/145 (4%)
Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
G D+ N L++ C++ + A M K G P+ VT+ S I + + N +++A
Sbjct: 102 GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEA 161
Query: 342 IEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL-- 398
+ M+ +M + G+ P YT II +LC+ G V A ++ + G P Y
Sbjct: 162 MSMVNQMVEM--GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLV 219
Query: 399 --VCDALNAAEEPSLLDDGLRKRIR 421
+C++ + SLL +++I+
Sbjct: 220 NGLCNSGRWRDADSLLRGMTKRKIK 244
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 123/268 (45%), Gaps = 47/268 (17%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-- 230
T +I L VN+AL F M RP+V YN +I LC G ++ A LL M
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318
Query: 231 -------------------------------ELPGFRCPPDVYTYTILISSYCKYGMQTG 259
E+ PD++TY+ LI+ +C
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC------- 371
Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
+ R+ EA H+F LM+ K P+VV YN LI G CK R+E +ELF +M+++G +
Sbjct: 372 ----MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 427
Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEAR 378
N VTYN+ I+ + D A ++ +KM ++ GVP +Y+ ++ LC+ G++ +A
Sbjct: 428 GNTVTYNTLIQGLFQAGDCDMAQKIFKKM--VSDGVPPDIITYSILLDGLCKYGKLEKAL 485
Query: 379 DFLAELVDGGSVPREYTYKLVCDALNAA 406
L P YTY ++ + + A
Sbjct: 486 VVFEYLQKSKMEPDIYTYNIMIEGMCKA 513
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 120/294 (40%), Gaps = 62/294 (21%)
Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG---------- 218
T + LI L +EA+A RM C+PD++ Y V+N LC+ G
Sbjct: 185 TVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLK 244
Query: 219 -------------------------NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
N N A L +M+ G R P+V TY LI C
Sbjct: 245 KMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIR--PNVVTYNSLIRCLCN 302
Query: 254 YGMQTGCRK----AIRRRI--------------------WEANHLFRLMLFKGFVPDVVA 289
YG + + I R+I EA L+ M+ + PD+
Sbjct: 303 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 362
Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
Y+ LI+G C R++ A +F+ M K C PN VTYN+ I+ + +++ +E+ R+M
Sbjct: 363 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 422
Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
V + +Y +I L +AG A+ ++V G P TY ++ D L
Sbjct: 423 QRGL-VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 475
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 22/245 (8%)
Query: 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGELVTTSSVTCLIKVLGEEGLV 185
D F N +T + F + V+ + ++MS+RG G VT ++ LI+ L + G
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT---LIQGLFQAGDC 446
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+ A F +M PD+ Y+++++ LC+ G KA + E ++ + PD+YTY
Sbjct: 447 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS--KMEPDIYTYN 504
Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
I+I CK G ++ + LF + KG P+V+ Y +I G C+ E
Sbjct: 505 IMIEGMCKAG-----------KVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEE 553
Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA--IEMMRKMQNLNHGVPTSSSYTP 363
A LF +M + G +PN TYN+ IR + + + DKA E++++M++ V +S+ +
Sbjct: 554 ADALFREMKEDGTLPNSGTYNTLIR--ARLRDGDKAASAELIKEMRSCGF-VGDASTISM 610
Query: 364 IIHAL 368
+I+ L
Sbjct: 611 VINML 615
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 131/303 (43%), Gaps = 51/303 (16%)
Query: 150 GLWD----FLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G W L DM R+ N +VT S+ LI +EG + EA + M + PD+
Sbjct: 304 GRWSDASRLLSDMIERKINPNVVTFSA---LIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY-----GMQ-- 257
+ Y+ +IN C ++A+ + E M C P+V TY LI +CK GM+
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELM--ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 418
Query: 258 -----------TGCRKAIRRRIWEANH------LFRLMLFKGFVPDVVAYNCLIDGCCKT 300
T + + +++A +F+ M+ G PD++ Y+ L+DG CK
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478
Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
++E+AL +F+ + K P+ TYN I +++ ++ + +L P
Sbjct: 479 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL-SLKGVKPNVII 537
Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
YT +I C G EA E+ + G++P TY + +R R+
Sbjct: 538 YTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTL----------------IRARL 581
Query: 421 RDG 423
RDG
Sbjct: 582 RDG 584
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 106/231 (45%), Gaps = 18/231 (7%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
RM+ R D+Y+YN++IN CR A +L +M G+ PD+ T + L++ YC
Sbjct: 105 RMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYE--PDIVTLSSLLNGYCH 162
Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
+RI EA L M + P+ V +N LI G + A+ L D M
Sbjct: 163 -----------GKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 211
Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
+GC P+ TY + + +ID A+ +++KM+ YT II ALC
Sbjct: 212 VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVIYTTIIDALCNYKN 270
Query: 374 VLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRI 420
V +A + E+ + G P TY + +C+ ++ LL D + ++I
Sbjct: 271 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 321
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+A +M +P+ +N +I+ L ++A L+++M G C PD++TY
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG--CQPDLFTY 223
Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
+++ CK G I A L + M DVV Y +ID C +
Sbjct: 224 GTVVNGLCKRG-----------DIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVN 272
Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYT 362
AL LF +M+ KG PN VTYNS IR A ++ M + +N P +++
Sbjct: 273 DALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN---PNVVTFS 329
Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
+I A + G+++EA E++ P +TY
Sbjct: 330 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345
D+ +YN LI+ C+ ++ AL + M K G P+ VT +S + Y I +A+ ++
Sbjct: 114 DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 173
Query: 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
+M + + P + ++ +IH L + EA + +V G P +TY V + L
Sbjct: 174 DQMFVMEYQ-PNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCK 232
Query: 406 AEEPSLLDDGLRKRIRDGIE 425
+ L L+K + IE
Sbjct: 233 RGDIDLALSLLKKMEKGKIE 252
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361
+++ A++LF +M + +P+ V +N + + +N+ D I + +MQNL SY
Sbjct: 60 KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDL-YSY 118
Query: 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV----CDALNAAEEPSLLD 413
+I+ C ++ A L +++ G P T + C +E +L+D
Sbjct: 119 NILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVD 174
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 17/239 (7%)
Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
RG G S LI + G + +A + F M + P+V YN+++ CR G
Sbjct: 619 RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEI 678
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
KA+ LL++M + G P+ TY +I YCK G + EA LF M
Sbjct: 679 EKAKELLDEMSVKGLH--PNAVTYCTIIDGYCKSG-----------DLAEAFRLFDEMKL 725
Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
KG VPD Y L+DGCC+ +ERA+ +F NKKGC + +N+ I + + +
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITIFG-TNKKGCASSTAPFNALINWVFKFGKTEL 784
Query: 341 AIEMMRKMQNLNH---GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
E++ ++ + + G P +Y +I LC+ G + A++ ++ + +P TY
Sbjct: 785 KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITY 843
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 19/244 (7%)
Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G L + T L+ L + V++A F M+ PDV++Y V+IN ++GN KA
Sbjct: 587 GILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKA 646
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
+ ++M G P+V Y +L+ +C+ G I +A L M KG
Sbjct: 647 SSIFDEMVEEGL--TPNVIIYNMLLGGFCRSG-----------EIEKAKELLDEMSVKGL 693
Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
P+ V Y +IDG CK+ + A LFD+M KG +P+ Y + + +N++++AI
Sbjct: 694 HPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAIT 753
Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG----SVPREYTYKLV 399
+ N +++ + +I+ + + G+ + L L+DG P + TY ++
Sbjct: 754 IFG--TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIM 811
Query: 400 CDAL 403
D L
Sbjct: 812 IDYL 815
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 129/315 (40%), Gaps = 64/315 (20%)
Query: 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206
++ G ++ +K+M G V T LIK + +A+ MK+ PD++
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVVI--YTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFC 489
Query: 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY---------------------- 244
YN +I L + ++AR L +M G + P+ +TY
Sbjct: 490 YNSLIIGLSKAKRMDEARSFLVEMVENGLK--PNAFTYGAFISGYIEASEFASADKYVKE 547
Query: 245 -------------TILISSYCKYGMQTGCRKAIRR------------------------R 267
T LI+ YCK G A R +
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607
Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
+ +A +FR M KG PDV +Y LI+G K +++A +FD+M ++G PN + YN
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667
Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
+ + EI+KA E++ +M ++ P + +Y II C++G + EA E+
Sbjct: 668 LLGGFCRSGEIEKAKELLDEM-SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK 726
Query: 388 GSVPREYTYKLVCDA 402
G VP + Y + D
Sbjct: 727 GLVPDSFVYTTLVDG 741
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 14/197 (7%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI ++G V EA + + M D Y V++N L + + A + +M
Sbjct: 561 TGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRG 620
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
G PDV++Y +LI+ + K G + +A+ +F M+ +G P+V+ YN
Sbjct: 621 KGI--APDVFSYGVLINGFSKLG-----------NMQKASSIFDEMVEEGLTPNVIIYNM 667
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
L+ G C++ IE+A EL D+M+ KG PN VTY + I Y ++ +A + +M+ L
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK-LK 726
Query: 353 HGVPTSSSYTPIIHALC 369
VP S YT ++ C
Sbjct: 727 GLVPDSFVYTTLVDGCC 743
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 109/254 (42%), Gaps = 27/254 (10%)
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
C I V+ +EG++ +A A F M P AY +I CR N + LL +M+
Sbjct: 352 CCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKR 411
Query: 234 GFRCPPDVYTYTILISSYCKYG------------MQTGCRKAI------------RRRIW 269
P YTY ++ C G + +GCR + R
Sbjct: 412 NIVISP--YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFG 469
Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
+A + + M +G PD+ YN LI G K R++ A +M + G PN TY +FI
Sbjct: 470 DAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529
Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389
Y +E A + +++M+ +P T +I+ C+ G+V+EA +VD G
Sbjct: 530 SGYIEASEFASADKYVKEMRECGV-LPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGI 588
Query: 390 VPREYTYKLVCDAL 403
+ TY ++ + L
Sbjct: 589 LGDAKTYTVLMNGL 602
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 64/255 (25%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-------- 253
P Y Y+V+I+ LC++ A+ LL +M+ G D +TY++LI K
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSL--DNHTYSLLIDGLLKGRNADAAK 332
Query: 254 --------YGMQTG--------CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
+G+ C + + +A LF M+ G +P AY LI+G
Sbjct: 333 GLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGY 392
Query: 298 CKTYRIERALELFDDMNKK-----------------------------------GCIPNR 322
C+ + + EL +M K+ GC PN
Sbjct: 393 CREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452
Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
V Y + I+ + + A+ ++++M+ G+ P Y +I L +A R+ EAR FL
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKE--QGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510
Query: 382 AELVDGGSVPREYTY 396
E+V+ G P +TY
Sbjct: 511 VEMVENGLKPNAFTY 525
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 19/174 (10%)
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
+P+ YN++I+ LC+ GN A+ L QM+ P V TYT L++ Y K G
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLM--PTVITYTSLLNGYDKMG----- 854
Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK---- 316
R+A E +F + G PD + Y+ +I+ K +AL L D M K
Sbjct: 855 RRA------EMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVD 908
Query: 317 -GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
GC + T + + ++ V E++ A ++M M L + +P S++ +I+ C
Sbjct: 909 DGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQY-IPDSATVIELINESC 961
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 240 DVYTYTILISSYCKYG-MQTG------CRKAIRRRIWEANHLFRL---MLFKGFVPDVVA 289
DV TY +LI ++C+ G +Q G K R + +L M+ KG VP
Sbjct: 220 DVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYT 279
Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
Y+ LIDG CK R+E A L +M+ G + TY+ I D A ++ +M
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM- 338
Query: 350 NLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
++HG+ Y I + + G + +A+ ++ G +P+ Y
Sbjct: 339 -VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 108/297 (36%), Gaps = 59/297 (19%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG--EEGLVNEALATFYRMKQFR 199
F R ++ + L +MS +G + ++VT + G + G + EA F MK
Sbjct: 672 FCRSGEIEKAKELLDEMSVKG----LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727
Query: 200 CRPDVYAYNVVINALCRVGNFNKA------------------------RFLLEQMELPG- 234
PD + Y +++ CR+ + +A F + EL
Sbjct: 728 LVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTE 787
Query: 235 ------------FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
F P DV TY I+I CK G + A LF M
Sbjct: 788 VLNRLMDGSFDRFGKPNDV-TYNIMIDYLCKEG-----------NLEAAKELFHQMQNAN 835
Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
+P V+ Y L++G K R +FD+ G P+ + Y+ I + KA+
Sbjct: 836 LMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKAL 895
Query: 343 EMMRKM---QNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
++ +M ++ G S S+ ++ + G + A + +V +P T
Sbjct: 896 VLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSAT 952
Score = 35.4 bits (80), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 52/229 (22%)
Query: 214 LCRVGNFNKARFLLEQMELPGF----------RCP-------PDVYTYTILISSYCKYGM 256
LC G+F KA ++E+M + RC D + IL Y G
Sbjct: 107 LCNFGSFEKALSVVERMIERNWPVAEVWSSIVRCSQEFVGKSDDGVLFGILFDGYIAKGY 166
Query: 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
I EA +F + VP + L+D + R++ +++ M ++
Sbjct: 167 -----------IEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVER 215
Query: 317 GCIPNRVTYNSFI---------------------RYYSVVNEIDKAIEMMRKMQNLNHG- 354
+ + TY+ I + + +D A+++ M + G
Sbjct: 216 NVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESM--ICKGL 273
Query: 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
VP +Y +I LC+ R+ +A+ L E+ G +TY L+ D L
Sbjct: 274 VPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGL 322
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 127/248 (51%), Gaps = 29/248 (11%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+EG +++A F + + +P V ++N +IN C+VGN ++ L QME R PD
Sbjct: 252 KEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKS--RTRPD 309
Query: 241 VYTYTILISSYCKYGMQTG--------CRKAI-------------RRRIWEANHL---FR 276
V+TY+ LI++ CK G C++ + R E + + ++
Sbjct: 310 VFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQ 369
Query: 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336
ML KG PD+V YN L++G CK + A + D M ++G P+++TY + I +
Sbjct: 370 KMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGG 429
Query: 337 EIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395
+++ A+E+ ++M +G+ ++ ++ +C+ GRV++A L E++ G P + T
Sbjct: 430 DVETALEIRKEMD--QNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487
Query: 396 YKLVCDAL 403
Y ++ DA
Sbjct: 488 YTMMMDAF 495
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 119/258 (46%), Gaps = 18/258 (6%)
Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
N + G +M +RG L+ + T LI G ++ ++ +M +PD+
Sbjct: 324 NKMDGAHGLFDEMCKRG---LIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDI 380
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
YN ++N C+ G+ AR +++ M G R PD TYT LI +C+ G
Sbjct: 381 VLYNTLVNGFCKNGDLVAARNIVDGMIRRGLR--PDKITYTTLIDGFCRGG--------- 429
Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
+ A + + M G D V ++ L+ G CK R+ A +M + G P+ VT
Sbjct: 430 --DVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487
Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
Y + + + +++++MQ+ H VP+ +Y +++ LC+ G++ A L +
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQSDGH-VPSVVTYNVLLNGLCKLGQMKNADMLLDAM 546
Query: 385 VDGGSVPREYTYKLVCDA 402
++ G VP + TY + +
Sbjct: 547 LNIGVVPDDITYNTLLEG 564
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 16/202 (7%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
+VY +N+++N C+ GN + A+ + +++ + P V ++ LI+ YCK G
Sbjct: 239 NVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQ--PTVVSFNTLINGYCKVG------- 289
Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
+ E L M PDV Y+ LI+ CK +++ A LFD+M K+G IPN
Sbjct: 290 ----NLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPND 345
Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
V + + I +S EID E +KM L+ G+ P Y +++ C+ G ++ AR+ +
Sbjct: 346 VIFTTLIHGHSRNGEIDLMKESYQKM--LSKGLQPDIVLYNTLVNGFCKNGDLVAARNIV 403
Query: 382 AELVDGGSVPREYTYKLVCDAL 403
++ G P + TY + D
Sbjct: 404 DGMIRRGLRPDKITYTTLIDGF 425
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 24/200 (12%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F RG +V+ + K+M + NG + + L+ + +EG V +A M + +
Sbjct: 425 FCRGGDVETALEIRKEMDQ--NGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIK 482
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
PD Y ++++A C+ G+ LL++M+ G P V TY +L++ CK G
Sbjct: 483 PDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGH--VPSVVTYNVLLNGLCKLG------ 534
Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
++ A+ L ML G VPD + YN L++G +R + + + + G + +
Sbjct: 535 -----QMKNADMLLDAMLNIGVVPDDITYNTLLEG---HHRHANSSKRYIQKPEIGIVAD 586
Query: 322 RVTYNSFIRYYSVVNEIDKA 341
+Y S+VNE+D+A
Sbjct: 587 LASYK------SIVNELDRA 600
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 1/148 (0%)
Query: 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337
+L GF +V +N L++ CK I A ++FD++ K+ P V++N+ I Y V
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGN 290
Query: 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397
+D+ + +M+ + P +Y+ +I+ALC+ ++ A E+ G +P + +
Sbjct: 291 LDEGFRLKHQMEK-SRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFT 349
Query: 398 LVCDALNAAEEPSLLDDGLRKRIRDGIE 425
+ + E L+ + +K + G++
Sbjct: 350 TLIHGHSRNGEIDLMKESYQKMLSKGLQ 377
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 131/279 (46%), Gaps = 21/279 (7%)
Query: 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177
FY E+ F+ TC + + +R N ++ W F DM R V T ++ +I
Sbjct: 178 FYLMKEK--GFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNI--MIN 233
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
VL +EG + +A M+ F +P + YN ++ G AR ++ +M+ GF+
Sbjct: 234 VLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQ- 292
Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
PD+ TY ++S C G A+ + R M G VPD V+YN LI GC
Sbjct: 293 -PDMQTYNPILSWMCNEG--------------RASEVLREMKEIGLVPDSVSYNILIRGC 337
Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
+E A D+M K+G +P TYN+ I + N+I+ A ++R+++ V
Sbjct: 338 SNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIRE-KGIVLD 396
Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
S +Y +I+ C+ G +A E++ G P ++TY
Sbjct: 397 SVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTY 435
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 16/223 (7%)
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
D YN++IN C+ G+ KA L ++M G + P +TYT LI C+
Sbjct: 396 DSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQ--PTQFTYTSLIYVLCR--------- 444
Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
+ + EA+ LF ++ KG PD+V N L+DG C ++RA L +M+ P+
Sbjct: 445 --KNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDD 502
Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
VTYN +R + ++A E+M +M+ G+ P SY +I + G A
Sbjct: 503 VTYNCLMRGLCGEGKFEEARELMGEMK--RRGIKPDHISYNTLISGYSKKGDTKHAFMVR 560
Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
E++ G P TY + L+ +E L ++ LR+ +GI
Sbjct: 561 DEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGI 603
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
G ++ A + M PD YN ++ LC G F +AR L+ +M+ G + PD
Sbjct: 481 GNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIK--PDHI 538
Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL---MLFKGFVPDVVAYNCLIDGCCK 299
+Y LIS Y K G + H F + ML GF P ++ YN L+ G K
Sbjct: 539 SYNTLISGYSKKG--------------DTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSK 584
Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
E A EL +M +G +PN ++ S I S
Sbjct: 585 NQEGELAEELLREMKSEGIVPNDSSFCSVIEAMS 618
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 39/169 (23%)
Query: 266 RRIWEANHLFRLMLFKGFVP-----------------------------------DVVAY 290
R + EA F LM KGF P +V +
Sbjct: 169 RMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTF 228
Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
N +I+ CK ++++A M G P VTYN+ ++ +S+ I+ A ++ +M++
Sbjct: 229 NIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKS 288
Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
P +Y PI+ +C GR A + L E+ + G VP +Y ++
Sbjct: 289 KGFQ-PDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNIL 333
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
+ ++ L+ CC+ ++ A+E F M +KG P T N + S +N I+ A
Sbjct: 155 TILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYA 214
Query: 347 KMQNLNHGVPTSSSYT--PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
M + S+ YT +I+ LC+ G++ +A+ FL + G P TY
Sbjct: 215 DMYRME---IKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTY 263
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 125/292 (42%), Gaps = 32/292 (10%)
Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
M +F G KG F + +RR + S + LI L + G NE FY MK+
Sbjct: 524 MDCMFKAGEPEKGRAMFEEIKARRF---VPDARSYSILIHGLIKAGFANETYELFYSMKE 580
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-- 255
C D AYN+VI+ C+ G NKA LLE+M+ GF P V TY +I K
Sbjct: 581 QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFE--PTVVTYGSVIDGLAKIDRL 638
Query: 256 ------MQTGCRKAIR----------------RRIWEANHLFRLMLFKGFVPDVVAYNCL 293
+ K I RI EA + ++ KG P++ +N L
Sbjct: 639 DEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSL 698
Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
+D K I AL F M + C PN+VTY I V + +KA ++MQ
Sbjct: 699 LDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQ--KQ 756
Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
G+ P++ SYT +I L +AG + EA G VP Y + + L+
Sbjct: 757 GMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLS 808
Score = 112 bits (280), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 128/294 (43%), Gaps = 20/294 (6%)
Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
+N+A E++ W ER + H + + +V AR N L L +MS G G V T
Sbjct: 78 VNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNT-- 135
Query: 172 VTCLIKVLG--EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
C+ VLG + + E M++F+ RP AY +I A V + + L +Q
Sbjct: 136 --CIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQ 193
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
M+ G+ P V+ +T LI + K G R+ A L M D+V
Sbjct: 194 MQELGYE--PTVHLFTTLIRGFAKEG-----------RVDSALSLLDEMKSSSLDADIVL 240
Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
YN ID K +++ A + F ++ G P+ VTY S I N +D+A+EM ++
Sbjct: 241 YNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLE 300
Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
N VP + +Y +I AG+ EA L GS+P Y + L
Sbjct: 301 K-NRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCL 353
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 107/240 (44%), Gaps = 22/240 (9%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LIK G + + M C PD+ N ++ + + G K R + E E+
Sbjct: 486 TSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFE--EI 543
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
R PD +Y+ILI K G E LF M +G V D AYN
Sbjct: 544 KARRFVPDARSYSILIHGLIKAGFAN-----------ETYELFYSMKEQGCVLDTRAYNI 592
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI----EMMRKM 348
+IDG CK ++ +A +L ++M KG P VTY S I + ++ +D+A E K
Sbjct: 593 VIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKR 652
Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
LN + Y+ +I + GR+ EA L EL+ G P YT+ + DAL AEE
Sbjct: 653 IELNVVI-----YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEE 707
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 131/299 (43%), Gaps = 20/299 (6%)
Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
++ A +F+H +E +E+T M V + N + + + + + N + T +
Sbjct: 254 VDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEK--NRRVPCTYA 310
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
+I G G +EA + R + P V AYN ++ L ++G ++A + E+M+
Sbjct: 311 YNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK 370
Query: 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291
P++ TY ILI C+ G ++ A L M G P+V N
Sbjct: 371 KDA---APNLSTYNILIDMLCRAG-----------KLDTAFELRDSMQKAGLFPNVRTVN 416
Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351
++D CK+ +++ A +F++M+ K C P+ +T+ S I V +D A ++ KM L
Sbjct: 417 IMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM--L 474
Query: 352 NHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
+ T+S YT +I GR + ++++ P D + A EP
Sbjct: 475 DSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEP 533
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 21/221 (9%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ LI G+ G ++EA + Q P++Y +N +++AL + N+A + M+
Sbjct: 661 SSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMK- 719
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
+C P+ TY ILI+ CK R+ +A ++ M +G P ++Y
Sbjct: 720 -ELKCTPNQVTYGILINGLCKV-----------RKFNKAFVFWQEMQKQGMKPSTISYTT 767
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
+I G K I A LFD G +P+ YN+ I S N A + + +
Sbjct: 768 MISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETR--R 825
Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
G+P + ++ L D L + G+V RE
Sbjct: 826 RGLPIHNKTCVVLL------DTLHKNDCLEQAAIVGAVLRE 860
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 143/319 (44%), Gaps = 25/319 (7%)
Query: 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTS 170
G +A E + F + + + F RG N++ MS+ VT +
Sbjct: 209 GYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKE-----VTCA 263
Query: 171 ----SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
S + LI L E G + EA +M + C+P Y V+I ALC G +KA L
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNL 323
Query: 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
++M G C P+V+TYT+LI C+ G +I EAN + R M+ P
Sbjct: 324 FDEMIPRG--CKPNVHTYTVLIDGLCRDG-----------KIEEANGVCRKMVKDRIFPS 370
Query: 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
V+ YN LI+G CK R+ A EL M K+ C PN T+N + V + KA+ +++
Sbjct: 371 VITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLK 430
Query: 347 KMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405
+M L++G+ P SY +I LC G + A L+ + P T+ + +A
Sbjct: 431 RM--LDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCK 488
Query: 406 AEEPSLLDDGLRKRIRDGI 424
+ + L +R GI
Sbjct: 489 QGKADVASAFLGLMLRKGI 507
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 34/242 (14%)
Query: 166 LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
L T S+ ++ +L + V E LA ++ + P V Y +++ L R G+ +
Sbjct: 543 LTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFR 602
Query: 226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285
+LE M+L G C P+VY YTI+I+ C++G R+ EA L M G P
Sbjct: 603 ILELMKLSG--CLPNVYPYTIIINGLCQFG-----------RVEEAEKLLSAMQDSGVSP 649
Query: 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY------------S 333
+ V Y ++ G +++RALE M ++G N Y+S ++ + S
Sbjct: 650 NHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEES 709
Query: 334 VVNEI-------DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
V++I + E++ ++ L G S ++ LC+ GR E+ D + +++
Sbjct: 710 TVSDIALRETDPECINELISVVEQL--GGCISGLCIFLVTRLCKEGRTDESNDLVQNVLE 767
Query: 387 GG 388
G
Sbjct: 768 RG 769
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 111/288 (38%), Gaps = 36/288 (12%)
Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
NG S LI L EG +N A M F PD + +INA C+ G +
Sbjct: 435 NGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADV 494
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC----RKAIRRRIWEANHLFRL- 277
A L M G D T T LI CK G ++ RI H +
Sbjct: 495 ASAFLGLMLRKGI--SLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVI 552
Query: 278 --MLFKG-----------------FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
ML KG VP VV Y L+DG ++ I + + + M GC
Sbjct: 553 LDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGC 612
Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
+PN Y I +++A +++ MQ + GV P +YT ++ G++ A
Sbjct: 613 LPNVYPYTIIINGLCQFGRVEEAEKLLSAMQ--DSGVSPNHVTYTVMVKGYVNNGKLDRA 670
Query: 378 RDFLAELVDGGSVPREYTYK-------LVCDALNAAEEPSLLDDGLRK 418
+ + +V+ G + Y L ++ +EE ++ D LR+
Sbjct: 671 LETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSDIALRE 718
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 17/198 (8%)
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPDV 287
+ME GF + Y ++++ CK G EA +F + K GFV D
Sbjct: 185 RMEADGF--VVGMIDYRTIVNALCKNGYT------------EAAEMFMSKILKIGFVLDS 230
Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKK-GCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
L+ G C+ + AL++FD M+K+ C PN V+Y+ I V +++A +
Sbjct: 231 HIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKD 290
Query: 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
+M P++ +YT +I ALC+ G + +A + E++ G P +TY ++ D L
Sbjct: 291 QMGE-KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRD 349
Query: 407 EEPSLLDDGLRKRIRDGI 424
+ + RK ++D I
Sbjct: 350 GKIEEANGVCRKMVKDRI 367
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 137/333 (41%), Gaps = 29/333 (8%)
Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
A F+ W F H + + +FA K +W + +M + +G T +
Sbjct: 132 AYRFFLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQ--DGFPTTARTFNL 189
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI GE GL +A+ F + K F RP ++YN ++N+L V + ++ +QM G
Sbjct: 190 LICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDG 249
Query: 235 FRCPPDVYTYTILISSYCKYG--------MQTGCRKAIRRRIWEANHLFRL--------- 277
F PDV TY IL+ + + G R + N L +
Sbjct: 250 F--SPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLA 307
Query: 278 -------MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
M G P V+ Y LIDG + +E D+M K GC P+ V Y I
Sbjct: 308 ALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMIT 367
Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
Y V E+DKA EM R+M + +P +Y +I LC AG EA L E+ G
Sbjct: 368 GYVVSGELDKAKEMFREM-TVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCN 426
Query: 391 PREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
P Y + L A + S +R+ ++ G
Sbjct: 427 PNFVVYSTLVSYLRKAGKLSEARKVIREMVKKG 459
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 13/181 (7%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
L+ +LG+ AL T MK+ P V Y +I+ L R GN ++ L++M G
Sbjct: 295 LLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAG 354
Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
C PDV YT++I+ Y G + +A +FR M KG +P+V YN +I
Sbjct: 355 --CRPDVVCYTVMITGYVVSG-----------ELDKAKEMFREMTVKGQLPNVFTYNSMI 401
Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
G C A L +M +GC PN V Y++ + Y ++ +A +++R+M H
Sbjct: 402 RGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKGHY 461
Query: 355 V 355
V
Sbjct: 462 V 462
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 17/260 (6%)
Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+LVT V + L + G + A +M+Q + P V YN +I+ LC+ + + A
Sbjct: 220 DLVTYGVV---VNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 276
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
L ++ME G R P+V TY+ LIS C YG R +A+ L M+ +
Sbjct: 277 NLFKEMETKGIR--PNVVTYSSLISCLCNYG-----------RWSDASRLLSDMIERKIN 323
Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
PDV ++ LID K ++ A +L+D+M K+ P+ VTY+S I + + + +D+A +M
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383
Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
M + H P +Y +I C+ RV E + E+ G V TY ++ L
Sbjct: 384 FEFMVS-KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLF 442
Query: 405 AAEEPSLLDDGLRKRIRDGI 424
A + + + ++ + DG+
Sbjct: 443 QAGDCDMAQEIFKEMVSDGV 462
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 29/247 (11%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++AL F M+ RP+V Y+ +I+ LC G ++ A LL M + PDV+T+
Sbjct: 272 MDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM--IERKINPDVFTF 329
Query: 245 TILISSYCKYGMQTGCRK------------------------AIRRRIWEANHLFRLMLF 280
+ LI ++ K G K + R+ EA +F M+
Sbjct: 330 SALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 389
Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
K PDVV YN LI G CK R+E +E+F +M+++G + N VTYN I+ + D
Sbjct: 390 KHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDM 449
Query: 341 AIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
A E+ ++M ++ GVP + +Y ++ LC+ G++ +A L P YTY ++
Sbjct: 450 AQEIFKEM--VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 507
Query: 400 CDALNAA 406
+ + A
Sbjct: 508 IEGMCKA 514
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 132/298 (44%), Gaps = 41/298 (13%)
Query: 150 GLWD----FLKDM-SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV 204
G W L DM R+ N ++ T S+ LI +EG + EA + M + P +
Sbjct: 305 GRWSDASRLLSDMIERKINPDVFTFSA---LIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361
Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
Y+ +IN C ++A+ + E M C PDV TY LI +CKY
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFM--VSKHCFPDVVTYNTLIKGFCKY---------- 409
Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
+R+ E +FR M +G V + V YN LI G + + A E+F +M G PN +T
Sbjct: 410 -KRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 468
Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
YN+ + +++KA+ + +Q + PT +Y +I +C+AG+V + D L
Sbjct: 469 YNTLLDGLCKNGKLEKAMVVFEYLQR-SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 527
Query: 385 VDGGSVPREYTYKLV------------CDAL--NAAEEPSLLDDG-----LRKRIRDG 423
G P Y + DAL E+ +L + G +R R+RDG
Sbjct: 528 SLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDG 585
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 19/234 (8%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V+ + ++MS+RG LV T + LI+ L + G + A F M
Sbjct: 406 FCKYKRVEEGMEVFREMSQRG---LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
P++ YN +++ LC+ G KA + E ++ + P +YTY I+I CK G
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS--KMEPTIYTYNIMIEGMCKAG----- 515
Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
++ + LF + KG PDVVAYN +I G C+ E A LF +M + G +P
Sbjct: 516 ------KVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLP 569
Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
N YN+ IR + + + E++++M++ G +S ++ + GR+
Sbjct: 570 NSGCYNTLIRARLRDGDREASAELIKEMRSC--GFAGDASTIGLVTNMLHDGRL 621
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 124/261 (47%), Gaps = 33/261 (12%)
Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R + K +D+ + +SR G EL +++A+A F M + R P
Sbjct: 38 RAFSGKTSYDYREKLSRNGLSELK-----------------LDDAVALFGEMVKSRPFPS 80
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263
+ ++ +++A+ ++ F+ L EQM+ G P + YTY+ILI+ +C+
Sbjct: 81 IIEFSKLLSAIAKMNKFDVVISLGEQMQNLGI--PHNHYTYSILINCFCR---------- 128
Query: 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323
R ++ A + M+ G+ P++V + L++G C + RI A+ L D M G PN V
Sbjct: 129 -RSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTV 187
Query: 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLA 382
T+N+ I + N+ +A+ ++ +M + G P +Y +++ LC+ G A + L
Sbjct: 188 TFNTLIHGLFLHNKASEAMALIDRM--VAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLN 245
Query: 383 ELVDGGSVPREYTYKLVCDAL 403
++ G P Y + D L
Sbjct: 246 KMEQGKLEPGVLIYNTIIDGL 266
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
++EA+A +M +P+ +N +I+ L ++A L+++M G C PD+ TY
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG--CQPDLVTY 224
Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
++++ CK G A +L M P V+ YN +IDG CK ++
Sbjct: 225 GVVVNGLCKRGDTD-----------LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMD 273
Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYT 362
AL LF +M KG PN VTY+S I A ++ M + +N P +++
Sbjct: 274 DALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN---PDVFTFS 330
Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
+I A + G+++EA E+V P TY
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 364
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 128/261 (49%), Gaps = 18/261 (6%)
Query: 110 LGLNKATEFYHWVERFFDFFHNE-MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVT 168
+ L+++ F++W D+ H EM + + W + D+ + N E ++
Sbjct: 128 IPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLI-DLMKSRNVE-IS 185
Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
+ T LI+ GL +EA+ F RM+ + C PD A+++VI+ L R ++A+ +
Sbjct: 186 IETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFD 245
Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
++ R PDV YT L+ +C+ G I EA +F+ M G P+V
Sbjct: 246 SLK---DRFEPDVIVYTNLVRGWCRAG-----------EISEAEKVFKEMKLAGIEPNVY 291
Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
Y+ +ID C+ +I RA ++F DM GC PN +T+N+ +R + +K +++ +M
Sbjct: 292 TYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQM 351
Query: 349 QNLNHGVPTSSSYTPIIHALC 369
+ L P + +Y +I A C
Sbjct: 352 KKLG-CEPDTITYNFLIEAHC 371
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 118/306 (38%), Gaps = 63/306 (20%)
Query: 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203
R + + +D LKD R +++ T L++ G ++EA F MK P+
Sbjct: 236 RASEAQSFFDSLKD---RFEPDVIV---YTNLVRGWCRAGEISEAEKVFKEMKLAGIEPN 289
Query: 204 VYAYNVVINALCRVGNFNKARFLLEQM--------------------------------- 230
VY Y++VI+ALCR G ++A + M
Sbjct: 290 VYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYN 349
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI------------------------RR 266
++ C PD TY LI ++C+ K + +R
Sbjct: 350 QMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKR 409
Query: 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326
+ A+ ++ M+ P+ V YN L+ + + L++ +M+ K PN TY
Sbjct: 410 DVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYR 469
Query: 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386
+ + + + A ++ ++M P+ S Y ++ L AG++ + + + +++
Sbjct: 470 LLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQ 529
Query: 387 GGSVPR 392
G V R
Sbjct: 530 KGLVAR 535
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 97/243 (39%), Gaps = 57/243 (23%)
Query: 167 VTTSSVTCLIKVLGE--EGL-VNEALATFYRMKQFRCRPD---VYAYNVVINALCRVGNF 220
V+ S V C+I+ G G+ ++++LA F+ R D + YN +I+ +V F
Sbjct: 109 VSPSVVRCVIEKCGSVRHGIPLHQSLA-FFNWATSRDDYDHKSPHPYNEMIDLSGKVRQF 167
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
+ A L++ M+ + T+TILI Y + G+ + EA H F M
Sbjct: 168 DLAWHLIDLMKSRNVEI--SIETFTILIRRYVRAGLAS-----------EAVHCFNRMED 214
Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
G VPD +A++ +I + R A FD + K P+ + Y + +R +
Sbjct: 215 YGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNLVRGW-------- 265
Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
C AG + EA E+ G P YTY +V
Sbjct: 266 ----------------------------CRAGEISEAEKVFKEMKLAGIEPNVYTYSIVI 297
Query: 401 DAL 403
DAL
Sbjct: 298 DAL 300
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 125/274 (45%), Gaps = 19/274 (6%)
Query: 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
+ LK+M RG +TT + ++K G + A F MK+ C DV Y V++
Sbjct: 216 EVLKEMVERGINPNLTTYNT--MLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVH 273
Query: 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
G +AR + ++M G P V TY +I CK + + A
Sbjct: 274 GFGVAGEIKRARNVFDEMIREG--VLPSVATYNAMIQVLCK-----------KDNVENAV 320
Query: 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
+F M+ +G+ P+V YN LI G R EL M +GC PN TYN IRYY
Sbjct: 321 VMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYY 380
Query: 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR---VLEARDFLAELVDGGS 389
S +E++KA+ + KM + +P +Y +I + R ++ A L E+V+ G
Sbjct: 381 SECSEVEKALGLFEKMGS-GDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGF 439
Query: 390 VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
+PR++T+ V + L + + LR + + G
Sbjct: 440 IPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKSG 473
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 146/318 (45%), Gaps = 20/318 (6%)
Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGI-VFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
KA +F+H+++ + ++ + ++ I + AR + +W + M G T ++
Sbjct: 72 KALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAI 131
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ G ++A+ F M + C D+ ++N +++ LC+ KA L +
Sbjct: 132 VA--ERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALR- 188
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
R D TY ++++ +C + +R +A + + M+ +G P++ YN
Sbjct: 189 --GRFSVDTVTYNVILNGWC-----------LIKRTPKALEVLKEMVERGINPNLTTYNT 235
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
++ G + +I A E F +M K+ C + VTY + + + V EI +A + +M +
Sbjct: 236 MLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM--IR 293
Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411
GV P+ ++Y +I LC+ V A E+V G P TY ++ L A E S
Sbjct: 294 EGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSR 353
Query: 412 LDDGLRKRIRDGIEYRFR 429
++ +++ +G E F+
Sbjct: 354 GEELMQRMENEGCEPNFQ 371
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 16/233 (6%)
Query: 167 VTTSSVTCLIKVLGEEGLVNEAL-ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225
V + T L+K L + ++A+ RM + C P+V++YN+++ LC +A
Sbjct: 120 VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALE 179
Query: 226 LLEQM-ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
LL M + G PPDV +YT +I+ + K G +A + ML +G +
Sbjct: 180 LLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSD-----------KAYSTYHEMLDRGIL 228
Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
PDVV YN +I CK +++A+E+ + M K G +P+ +TYNS + Y + +AI
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288
Query: 345 MRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
++KM+ + GV P +Y+ ++ LC+ GR +EAR + G P TY
Sbjct: 289 LKKMR--SDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTY 339
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 125/301 (41%), Gaps = 61/301 (20%)
Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
RG G S T +I +EG ++A +T++ M PDV YN +I ALC+
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
+KA +L M G PD TY ++ YC G EA + M
Sbjct: 248 DKAMEVLNTMVKNGVM--PDCMTYNSILHGYCSSGQPK-----------EAIGFLKKMRS 294
Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV------ 334
G PDVV Y+ L+D CK R A ++FD M K+G P TY + ++ Y+
Sbjct: 295 DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVE 354
Query: 335 -----------------------------VNEIDKAIEMMRKM--QNLNHGVPTSSSYTP 363
++D+A+ + KM Q LN P + +Y
Sbjct: 355 MHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLN---PNAVTYGA 411
Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV------CDALNAAEE--PSLLDDG 415
+I LC++GRV +A + +++D G P Y + C+ AEE +LD G
Sbjct: 412 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471
Query: 416 L 416
+
Sbjct: 472 I 472
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 120/273 (43%), Gaps = 38/273 (13%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ LI ++G V++A+ F +M+Q P+ Y VI LC+ G A EQM
Sbjct: 375 SILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434
Query: 233 PGFRCPPDVYTYTILISSYCKYG---------------------------MQTGCRKAIR 265
G P Y LI C + + C++
Sbjct: 435 EGL--SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEG-- 490
Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
R+ E+ LF LM+ G P+V+ YN LI+G C +++ A++L M G PN VTY
Sbjct: 491 -RVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549
Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
++ I Y ++ ++ A+ + ++M+ + GV P +Y I+ L + R A++ +
Sbjct: 550 STLINGYCKISRMEDALVLFKEME--SSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 607
Query: 385 VDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
+ G+ TY ++ L+ + L DD L+
Sbjct: 608 TESGTQIELSTYNII---LHGLCKNKLTDDALQ 637
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 14/221 (6%)
Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
+EG V E+ F M + +P+V YN +IN C G ++A LL M G + P+
Sbjct: 488 KEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLK--PN 545
Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
TY+ LI+ YCK R+ +A LF+ M G PD++ YN ++ G +T
Sbjct: 546 TVTYSTLINGYCKI-----------SRMEDALVLFKEMESSGVSPDIITYNIILQGLFQT 594
Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
R A EL+ + + G TYN + D A++M + + ++ + + +
Sbjct: 595 RRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLE-ART 653
Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
+ +I AL + GR EA+D G VP +TY+L+ +
Sbjct: 654 FNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAE 694
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 18/244 (7%)
Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
FLK M G V T S+ L+ L + G EA F M + +P++ Y ++
Sbjct: 288 FLKKMRSDGVEPDVVTYSL--LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQG 345
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
G + LL+ M G PD Y ++ILI +Y K G ++ +A
Sbjct: 346 YATKGALVEMHGLLDLMVRNGIH--PDHYVFSILICAYAKQG-----------KVDQAML 392
Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
+F M +G P+ V Y +I CK+ R+E A+ F+ M +G P + YNS I
Sbjct: 393 VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC 452
Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSS-YTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
N+ ++A E++ +M L+ G+ ++ + II + C+ GRV+E+ +V G P
Sbjct: 453 TCNKWERAEELILEM--LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPN 510
Query: 393 EYTY 396
TY
Sbjct: 511 VITY 514
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 18/228 (7%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
PD+ Y ++I CR G + L + GFR D +T L+ C +
Sbjct: 85 PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRV--DAIAFTPLLKGLCADKRTSDAM 142
Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD---DMNKKGC 318
+ RR+ E G +P+V +YN L+ G C R + ALEL D G
Sbjct: 143 DIVLRRMTEL----------GCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGS 192
Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
P+ V+Y + I + + DKA +M L+ G+ P +Y II ALC+A + +A
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEM--LDRGILPDVVTYNSIIAALCKAQAMDKA 250
Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
+ L +V G +P TY + ++ +P L+K DG+E
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVE 298
Score = 38.9 bits (89), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 81/223 (36%), Gaps = 28/223 (12%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+ +AL F M+ PD+ YN+++ L + A+ L ++ G + ++ TY
Sbjct: 562 MEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQI--ELSTY 619
Query: 245 TILISSYCKYGM--------QTGCRKAIR----------------RRIWEANHLFRLMLF 280
I++ CK + Q C ++ R EA LF
Sbjct: 620 NIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSS 679
Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
G VP+ Y + + +E +LF M GC + N +R EI +
Sbjct: 680 NGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITR 739
Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383
A + + + + S++ + L G+ E FL E
Sbjct: 740 AGTYLSMIDEKHFSLEASTA--SLFIDLLSGGKYQEYYRFLPE 780
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 119/258 (46%), Gaps = 31/258 (12%)
Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G + + ++ + + G AL +M++ +PDV Y+ +I+ LC+ G+ +
Sbjct: 254 GKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHS 313
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------------- 266
A++L +M G P+V+TY +I +C +G + ++ +R
Sbjct: 314 DAQYLFSEMLEKGI--APNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNA 371
Query: 267 ---------RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
+++EA L ML + PD V YN +I G CK R + A +FD M
Sbjct: 372 LISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-- 429
Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
P+ VT+N+ I Y +D+ ++++R++ V +++Y +IH CE + A
Sbjct: 430 --PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL-VANTTTYNTLIHGFCEVDNLNAA 486
Query: 378 RDFLAELVDGGSVPREYT 395
+D E++ G P T
Sbjct: 487 QDLFQEMISHGVCPDTIT 504
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 112/275 (40%), Gaps = 59/275 (21%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L EG V EA A +M DV Y ++N +C++G+ A LL +ME
Sbjct: 232 LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 291
Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
+ PDV Y+ +I CK G + +A +LF ML KG P+V YNC+I
Sbjct: 292 IK--PDVVIYSAIIDRLCKDGHHS-----------DAQYLFSEMLEKGIAPNVFTYNCMI 338
Query: 295 DGCCKTYR-----------IER------------------------ALELFDDMNKKGCI 319
DG C R IER A +L D+M +
Sbjct: 339 DGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF 398
Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
P+ VTYNS I + N D A M M + P ++ II C A RV E
Sbjct: 399 PDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS-----PDVVTFNTIIDVYCRAKRVDEGMQ 453
Query: 380 FLAELVDGGSVPREYTYKLV------CDALNAAEE 408
L E+ G V TY + D LNAA++
Sbjct: 454 LLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQD 488
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 114/230 (49%), Gaps = 33/230 (14%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ +I L ++G ++A F M + P+V+ YN +I+ C G ++ A+ LL M
Sbjct: 300 SAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDM-- 357
Query: 233 PGFRCPPDVYTYTILISSYCKYG----MQTGCRKAIRRRIW------------------- 269
PDV T+ LIS+ K G + C + + R I+
Sbjct: 358 IEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRF 417
Query: 270 -EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
+A H+F LM PDVV +N +ID C+ R++ ++L +++++G + N TYN+
Sbjct: 418 DDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL 473
Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEA 377
I + V+ ++ A ++ ++M ++HGV P + + +++ CE ++ EA
Sbjct: 474 IHGFCEVDNLNAAQDLFQEM--ISHGVCPDTITCNILLYGFCENEKLEEA 521
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V+E + + + + YN +I+ C V N N A+ L ++M G PD T
Sbjct: 448 VDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV--CPDTITC 505
Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
IL+ +C+ ++ EA LF ++ D VAYN +I G CK +++
Sbjct: 506 NILLYGFCE-----------NEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVD 554
Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
A +LF + G P+ TYN I + + I A + KM++ H P +S+Y +
Sbjct: 555 EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHE-PDNSTYNTL 613
Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
I +AG + ++ + ++E+ G +T K+V D +
Sbjct: 614 IRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVADLI 652
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 112/249 (44%), Gaps = 27/249 (10%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A++ + +M+ R ++Y++N++I C + + ++ GF+ PDV T+ L
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQ--PDVVTFNTL 182
Query: 248 ISSYC------------KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
+ C Y ++TG EA LF M+ G P V+ +N LI+
Sbjct: 183 LHGLCLEDRISEALALFGYMVETG--------FLEAVALFDQMVEIGLTPVVITFNTLIN 234
Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
G C R+ A L + M KG + VTY + + + + A+ ++ KM+ H
Sbjct: 235 GLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEE-THIK 293
Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA----AEEPSL 411
P Y+ II LC+ G +A+ +E+++ G P +TY + D + ++ L
Sbjct: 294 PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 353
Query: 412 LDDGLRKRI 420
L D + + I
Sbjct: 354 LRDMIEREI 362
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 99/234 (42%), Gaps = 17/234 (7%)
Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V+ R V L+++SRRG + T++ LI E +N A F M
Sbjct: 441 VYCRAKRVDEGMQLLREISRRG--LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
PD N+++ C +A L E +++ + D Y I+I CK
Sbjct: 499 CPDTITCNILLYGFCENEKLEEALELFEVIQMS--KIDLDTVAYNIIIHGMCK------- 549
Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
++ EA LF + G PDV YN +I G C I A LF M G P
Sbjct: 550 ----GSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEP 605
Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374
+ TYN+ IR EIDK+IE++ +M+ ++G + ++ L GR+
Sbjct: 606 DNSTYNTLIRGCLKAGEIDKSIELISEMR--SNGFSGDAFTIKMVADLITDGRL 657
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 115/256 (44%), Gaps = 47/256 (18%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-------------- 230
VN+AL F M RP+V YN +I LC G ++ A LL M
Sbjct: 272 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331
Query: 231 -------------------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
E+ PD++TY+ LI+ +C + R+ EA
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC-----------MHDRLDEA 380
Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
H+F LM+ K P+VV YN LI G CK R++ +ELF +M+++G + N VTY + I
Sbjct: 381 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHG 440
Query: 332 YSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
+ E D A + ++M ++ GV P +Y+ ++ LC G+V A L
Sbjct: 441 FFQARECDNAQIVFKQM--VSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKME 498
Query: 391 PREYTYKLVCDALNAA 406
P YTY ++ + + A
Sbjct: 499 PDIYTYNIMIEGMCKA 514
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 135/330 (40%), Gaps = 62/330 (18%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F GN + + M G + + LI L +EA+A RM C+
Sbjct: 161 FCHGNRISDAVSLVGQMVEMGYQP--DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQ 218
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMEL----PGF---------------------- 235
PD+ Y +V+N LC+ G+ + A LL++ME PG
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNL 278
Query: 236 -------RCPPDVYTYTILISSYCKYGMQTGCRK----AIRRRI---------------- 268
P+V TY LI C YG + + I R+I
Sbjct: 279 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338
Query: 269 ----WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
EA L+ M+ + PD+ Y+ LI+G C R++ A +F+ M K C PN VT
Sbjct: 339 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 398
Query: 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
YN+ I+ + +D+ +E+ R+M V + +YT +IH +A A+ ++
Sbjct: 399 YNTLIKGFCKAKRVDEGMELFREMSQRGL-VGNTVTYTTLIHGFFQARECDNAQIVFKQM 457
Query: 385 VDGGSVPREYTYKLVCDAL--NAAEEPSLL 412
V G +P TY ++ D L N E +L+
Sbjct: 458 VSDGVLPDIMTYSILLDGLCNNGKVETALV 487
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 20/238 (8%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
ALA +M + PD+ N ++N C + A L+ QM G++ PD +T+ L
Sbjct: 135 ALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQ--PDSFTFNTL 192
Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
I ++ R EA L M+ KG PD+V Y +++G CK I+ AL
Sbjct: 193 IHGLFRH-----------NRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241
Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
L M + P V YN+ I ++ A+ + +M N G+ P +Y +I
Sbjct: 242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMD--NKGIRPNVVTYNSLIR 299
Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRKRI 420
LC GR +A L+++++ P T+ + DA E L D+ +++ I
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 18/231 (7%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M+ ++Y Y+++IN CR + A +L +M G+ PD+ T L++ +C
Sbjct: 106 QMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYE--PDIVTLNSLLNGFCH 163
Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
RI +A L M+ G+ PD +N LI G + R A+ L D M
Sbjct: 164 -----------GNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRM 212
Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
KGC P+ VTY + +ID A+ +++KM+ P Y II ALC
Sbjct: 213 VVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQ-GKIEPGVVIYNTIIDALCNYKN 271
Query: 374 VLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRI 420
V +A + E+ + G P TY + +C+ ++ LL D + ++I
Sbjct: 272 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 322
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 15/224 (6%)
Query: 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN 186
D F N +T + F + V + ++MS+RG + T + T LI + +
Sbjct: 391 DCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRG--LVGNTVTYTTLIHGFFQARECD 448
Query: 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246
A F +M PD+ Y+++++ LC G A + E ++ + PD+YTY I
Sbjct: 449 NAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRS--KMEPDIYTYNI 506
Query: 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
+I CK G ++ + LF + KG P+VV Y ++ G C+ E A
Sbjct: 507 MIEGMCKAG-----------KVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEA 555
Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
LF +M ++G +P+ TYN+ IR + + + E++R+M++
Sbjct: 556 DALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599
Score = 38.9 bits (89), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 38/150 (25%)
Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL--NHGVPTSS 359
+++ A+ LF DM K P+ V ++ + + +N+ D I + +MQNL +H + T S
Sbjct: 61 KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120
Query: 360 -------------------------SYTP-------IIHALCEAGRVLEARDFLAELVDG 387
Y P +++ C R+ +A + ++V+
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 388 GSVPREYTYKLVCDAL----NAAEEPSLLD 413
G P +T+ + L A+E +L+D
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVD 210
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 119/264 (45%), Gaps = 48/264 (18%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LIK L +G++ EA M + P+V +N+++N LC++G + A L++ M G
Sbjct: 397 LIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456
Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
+ PD++T+ ILI Y + + ++ A + +ML G PDV YN L+
Sbjct: 457 YF--PDIFTFNILIHGY-----------STQLKMENALEILDVMLDNGVDPDVYTYNSLL 503
Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYN----SFIRYYSV--------------VN 336
+G CKT + E +E + M +KGC PN T+N S RY + VN
Sbjct: 504 NGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVN 563
Query: 337 -----------------EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
++D A + RKM+ ++ +Y IIHA E V A
Sbjct: 564 PDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEK 623
Query: 380 FLAELVDGGSVPREYTYKLVCDAL 403
E+VD P YTY+L+ D
Sbjct: 624 LFQEMVDRCLGPDGYTYRLMVDGF 647
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 121/259 (46%), Gaps = 16/259 (6%)
Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V + +VK L + +RG L + I+ L + G ++ A+ + +
Sbjct: 225 VLCKKGDVKECEKLLDKVIKRG--VLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGP 282
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
+PDV YN +I LC+ F +A L +M G PD YTY LI+ YCK GM
Sbjct: 283 KPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLE--PDSYTYNTLIAGYCKGGMV--- 337
Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
+ R + +A +F GFVPD Y LIDG C RAL LF++ KG P
Sbjct: 338 -QLAERIVGDA-------VFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKP 389
Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
N + YN+ I+ S I +A ++ +M +P ++ +++ LC+ G V +A
Sbjct: 390 NVILYNTLIKGLSNQGMILEAAQLANEMSEKGL-IPEVQTFNILVNGLCKMGCVSDADGL 448
Query: 381 LAELVDGGSVPREYTYKLV 399
+ ++ G P +T+ ++
Sbjct: 449 VKVMISKGYFPDIFTFNIL 467
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 136/308 (44%), Gaps = 30/308 (9%)
Query: 114 KATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
KA E ++ + + F H T + + + + + L DM R G +
Sbjct: 22 KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDM-RENVGNHMLEGVYV 80
Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
+K G +G V EA+ F RM + C P V++YN +++ L G F++A + +M
Sbjct: 81 GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDR 140
Query: 234 GFRCPPDVYTYTILISSYCKYG------------MQTGCRK------AIRRRIWEAN--- 272
G PDVY++TI + S+CK GC + +E N
Sbjct: 141 GI--TPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKA 198
Query: 273 ---HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329
LF ML G + +N L+ CK ++ +L D + K+G +PN TYN FI
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFI 258
Query: 330 RYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
+ E+D A+ M+ + + G P +Y +I+ LC+ + EA +L ++V+ G
Sbjct: 259 QGLCQRGELDGAVRMVGCL--IEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEG 316
Query: 389 SVPREYTY 396
P YTY
Sbjct: 317 LEPDSYTY 324
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
PD + Y +I+ LC G N+A L + G + P+V Y LI GM
Sbjct: 354 PDQFTYRSLIDGLCHEGETNRALALFNEALGKGIK--PNVILYNTLIKGLSNQGM----- 406
Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
I EA L M KG +P+V +N L++G CK + A L M KG P+
Sbjct: 407 ------ILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPD 460
Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDF 380
T+N I YS +++ A+E++ M L++GV P +Y +++ LC+ + + +
Sbjct: 461 IFTFNILIHGYSTQLKMENALEILDVM--LDNGVDPDVYTYNSLLNGLCKTSKFEDVMET 518
Query: 381 LAELVDGGSVPREYTYKLVCDAL 403
+V+ G P +T+ ++ ++L
Sbjct: 519 YKTMVEKGCAPNLFTFNILLESL 541
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 103/252 (40%), Gaps = 48/252 (19%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
PDVY YN ++N LC+ F + M G C P+++T+ IL+ S C+Y
Sbjct: 494 PDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKG--CAPNLFTFNILLESLCRY------- 544
Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
R++ EA L M K PD V + LIDG CK ++ A LF M + + +
Sbjct: 545 ----RKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSS 600
Query: 322 RV-TYNSFIRYYSVVNEIDKAIEMMRKM----------------------QNLNHG---- 354
TYN I ++ + A ++ ++M N+N G
Sbjct: 601 STPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFL 660
Query: 355 --------VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
+P+ ++ +I+ LC RV EA + +V G VP D A
Sbjct: 661 LEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPEAVNTICDVDKKEVA 720
Query: 407 EEPSLLDDGLRK 418
+L+D L+K
Sbjct: 721 APKLVLEDLLKK 732
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 24/181 (13%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFR 199
F + ++ G + + M V++S+ T +I E+ V A F M
Sbjct: 576 FCKNGDLDGAYTLFRKMEEAYK---VSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRC 632
Query: 200 CRPDVYAYNVVINALCRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258
PD Y Y ++++ C+ GN N +FLLE ME GF P + T +I+ C
Sbjct: 633 LGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMME-NGF--IPSLTTLGRVINCLC------ 683
Query: 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
+ R++EA + M+ KG VP+ V C +D + + +D+ KK C
Sbjct: 684 -----VEDRVYEAAGIIHRMVQKGLVPEAVNTICDVD----KKEVAAPKLVLEDLLKKSC 734
Query: 319 I 319
I
Sbjct: 735 I 735
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 127/300 (42%), Gaps = 49/300 (16%)
Query: 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193
T + + + ++ + LK+M G V T T I+VLG G +NEA
Sbjct: 225 TYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYT--FTICIRVLGRAGKINEAYEILK 282
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM----------------------- 230
RM C PDV Y V+I+ALC + A+ + E+M
Sbjct: 283 RMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNR 342
Query: 231 ----------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
E+ PDV T+TIL+ + CK G EA +M
Sbjct: 343 DLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAG-----------NFGEAFDTLDVMRD 391
Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
+G +P++ YN LI G + +R++ ALELF +M G P TY FI YY +
Sbjct: 392 QGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVS 451
Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
A+E KM+ G+ P + +++L +AGR EA+ L D G VP TY ++
Sbjct: 452 ALETFEKMK--TKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMM 509
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 123/255 (48%), Gaps = 19/255 (7%)
Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G ++ S LI +L + EA+ + RM RP + Y+ ++ L + + +
Sbjct: 183 GFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSV 242
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
LL++ME G + P+VYT+TI I + G +I EA + + M +G
Sbjct: 243 MGLLKEMETLGLK--PNVYTFTICIRVLGRAG-----------KINEAYEILKRMDDEGC 289
Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
PDVV Y LID C +++ A E+F+ M P+RVTY + + +S ++D +
Sbjct: 290 GPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQ 349
Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK-LVCDA 402
+M+ H VP ++T ++ ALC+AG EA D L + D G +P +TY L+C
Sbjct: 350 FWSEMEKDGH-VPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGL 408
Query: 403 LNAAEEPSLLDDGLR 417
L LDD L
Sbjct: 409 LRVHR----LDDALE 419
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 116/242 (47%), Gaps = 21/242 (8%)
Query: 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV--LGEEGLVNEALATFYRMKQFRCRP 202
G++V L F K M +G + + V C + L + G EA FY +K P
Sbjct: 447 GDSVSALETFEK-MKTKG----IAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVP 501
Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
D YN+++ +VG ++A LL +M G C PDV LI++ K
Sbjct: 502 DSVTYNMMMKCYSKVGEIDEAIKLLSEMMENG--CEPDVIVVNSLINTLYK--------- 550
Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
R+ EA +F M P VV YN L+ G K +I+ A+ELF+ M +KGC PN
Sbjct: 551 --ADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNT 608
Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
+T+N+ +E+ A++M+ KM ++ VP +Y II L + G+V EA F
Sbjct: 609 ITFNTLFDCLCKNDEVTLALKMLFKMMDMGC-VPDVFTYNTIIFGLVKNGQVKEAMCFFH 667
Query: 383 EL 384
++
Sbjct: 668 QM 669
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 106/234 (45%), Gaps = 17/234 (7%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L E ++ A F ++K C PDV YN +++A + G ++ L ++M
Sbjct: 791 LIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMST-- 848
Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL-FRLMLFKGFVPDVVAYNCL 293
C + T+ I+IS K G + +A L + LM + F P Y L
Sbjct: 849 HECEANTITHNIVISGLVKAG-----------NVDDALDLYYDLMSDRDFSPTACTYGPL 897
Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
IDG K+ R+ A +LF+ M GC PN YN I + E D A + ++M +
Sbjct: 898 IDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRM--VKE 955
Query: 354 GV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
GV P +Y+ ++ LC GRV E + EL + G P Y L+ + L +
Sbjct: 956 GVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKS 1009
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 49/210 (23%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
LI L + G + EA F M + CRP+ YN++IN + G + A L ++M G
Sbjct: 897 LIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG 956
Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
R PD+ TY++L+ C G R+ E H F+ + G PDVV YN +I
Sbjct: 957 VR--PDLKTYSVLVDCLCMVG-----------RVDEGLHYFKELKESGLNPDVVCYNLII 1003
Query: 295 DGCCKTYRIERALELFDDM------------------------------------NKKGC 318
+G K++R+E AL LF++M + G
Sbjct: 1004 NGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGL 1063
Query: 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
PN T+N+ IR YS+ + + A + + M
Sbjct: 1064 EPNVFTFNALIRGYSLSGKPEHAYAVYQTM 1093
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 12/247 (4%)
Query: 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC 237
+L E G+ N + + CR +I C+ N + AR L E+
Sbjct: 723 ILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFT-KDLGV 781
Query: 238 PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297
P + TY +LI + M I A +F + G +PDV YN L+D
Sbjct: 782 QPKLPTYNLLIGGLLEADM-----------IEIAQDVFLQVKSTGCIPDVATYNFLLDAY 830
Query: 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357
K+ +I+ EL+ +M+ C N +T+N I +D A+++ + + PT
Sbjct: 831 GKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPT 890
Query: 358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417
+ +Y P+I L ++GR+ EA+ ++D G P Y ++ + A E +
Sbjct: 891 ACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFK 950
Query: 418 KRIRDGI 424
+ +++G+
Sbjct: 951 RMVKEGV 957
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 118/269 (43%), Gaps = 16/269 (5%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR-C 200
+ + + L++ K+MS T ++ +I L + G V++AL +Y + R
Sbjct: 830 YGKSGKIDELFELYKEMSTHECEANTITHNI--VISGLVKAGNVDDALDLYYDLMSDRDF 887
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
P Y +I+ L + G +A+ L E M + C P+ Y ILI+ + K G
Sbjct: 888 SPTACTYGPLIDGLSKSGRLYEAKQLFEGM--LDYGCRPNCAIYNILINGFGKAGEADA- 944
Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
A LF+ M+ +G PD+ Y+ L+D C R++ L F ++ + G P
Sbjct: 945 ----------ACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNP 994
Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
+ V YN I + +++A+ + +M+ P +Y +I L AG V EA
Sbjct: 995 DVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKI 1054
Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEP 409
E+ G P +T+ + + + +P
Sbjct: 1055 YNEIQRAGLEPNVFTFNALIRGYSLSGKP 1083
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 103/239 (43%), Gaps = 18/239 (7%)
Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ G + ++ L+ G+ G ++E + M C + +N+VI+ L + GN
Sbjct: 812 KSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNV 871
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
+ A L + + P TY LI K G R++EA LF ML
Sbjct: 872 DDALDLYYDL-MSDRDFSPTACTYGPLIDGLSKSG-----------RLYEAKQLFEGMLD 919
Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
G P+ YN LI+G K + A LF M K+G P+ TY+ + +V +D+
Sbjct: 920 YGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDE 979
Query: 341 AIEMMRKMQ--NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL-VDGGSVPREYTY 396
+ ++++ LN P Y II+ L ++ R+ EA E+ G P YTY
Sbjct: 980 GLHYFKELKESGLN---PDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTY 1035
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 77/187 (41%), Gaps = 14/187 (7%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F + K M + G + T SV L+ L G V+E L F +K+
Sbjct: 936 FGKAGEADAACALFKRMVKEGVRPDLKTYSV--LVDCLCMVGRVDEGLHYFKELKESGLN 993
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
PDV YN++IN L + +A L +M+ PD+YTY LI + GM
Sbjct: 994 PDVVCYNLIINGLGKSHRLEEALVLFNEMK-TSRGITPDLYTYNSLILNLGIAGM----- 1047
Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
+ EA ++ + G P+V +N LI G + + E A ++ M G PN
Sbjct: 1048 ------VEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1101
Query: 322 RVTYNSF 328
TY
Sbjct: 1102 TGTYEQL 1108
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Query: 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
+++ + +A + R M GFV + +YN LI K+ A+E++ M +G P+
Sbjct: 164 SVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSL 223
Query: 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382
TY+S + +ID + ++++M+ L P ++T I L AG++ EA + L
Sbjct: 224 QTYSSLMVGLGKRRDIDSVMGLLKEMETLGLK-PNVYTFTICIRVLGRAGKINEAYEILK 282
Query: 383 ELVDGGSVPREYTYKLVCDALNAA 406
+ D G P TY ++ DAL A
Sbjct: 283 RMDDEGCGPDVVTYTVLIDALCTA 306
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/381 (23%), Positives = 164/381 (43%), Gaps = 44/381 (11%)
Query: 45 IESVADVLKSIPRFFFQSPR----SIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPA 100
+ VADV K+I + SP+ S Q+G R + Q +++ ++ N G
Sbjct: 65 VRDVADVAKNISKVLMSSPQLVLDSALDQSGLR----VSQEVVE----DVLNRFRNAGLL 116
Query: 101 AYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSR 160
YR F+ W E+ + H+ M A+ K +WD + M +
Sbjct: 117 TYR--------------FFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRK 162
Query: 161 RGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220
+ +++ + +++ V+EA+ F M+++ P++ A+N +++ALC+ N
Sbjct: 163 K---KMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNV 219
Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280
KA+ + E M R PD TY+IL+ + K + +A +FR M+
Sbjct: 220 RKAQEVFENMR---DRFTPDSKTYSILLEGWGK-----------EPNLPKAREVFREMID 265
Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
G PD+V Y+ ++D CK R++ AL + M+ C P Y+ + Y N +++
Sbjct: 266 AGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEE 325
Query: 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400
A++ +M+ + + +I A C+A R+ L E+ G P + ++
Sbjct: 326 AVDTFLEMERSGMKADV-AVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIIL 384
Query: 401 DALNAAEEPSLLDDGLRKRIR 421
L E D RK I+
Sbjct: 385 RHLIERGEKDEAFDVFRKMIK 405
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 43/190 (22%)
Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
TT + L+ G E + EA+ TF M++ + DV +N +I A C+ +L
Sbjct: 306 TTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVL 365
Query: 228 EQMELPG---------------------------FR-----CPPDVYTYTILISSYCKYG 255
++M+ G FR C PD TYT++I +C+
Sbjct: 366 KEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCEPDADTYTMVIKMFCE-- 423
Query: 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315
++ + A+ +++ M KG P + ++ LI+G C+ ++A L ++M +
Sbjct: 424 ---------KKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIE 474
Query: 316 KGCIPNRVTY 325
G P+ VT+
Sbjct: 475 MGIRPSGVTF 484
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 29/247 (11%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++AL F M RPDV+ Y+ +I+ LC G ++ A LL M + P+V T+
Sbjct: 256 VDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM--LERKINPNVVTF 313
Query: 245 TILISSYCKYGMQTGCRK------------------------AIRRRIWEANHLFRLMLF 280
LI ++ K G K + R+ EA +F LM+
Sbjct: 314 NSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 373
Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
K +PDVV YN LI+G CK ++ +ELF DM+++G + N VTY + I + ++ D
Sbjct: 374 KDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDN 433
Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
A + ++M ++ GV P +Y ++ LC+ G++ +A L P YTY ++
Sbjct: 434 AQMVFKQM--VSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIM 491
Query: 400 CDALNAA 406
+ + A
Sbjct: 492 SEGMCKA 498
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 129/261 (49%), Gaps = 17/261 (6%)
Query: 165 ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224
+LVT +V I L + G + AL +M++ + DV Y+ VI++LC+ + + A
Sbjct: 204 DLVTYGAV---INGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDAL 260
Query: 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284
L +M+ G R PDV+TY+ LIS C YG R +A+ L ML +
Sbjct: 261 NLFTEMDNKGIR--PDVFTYSSLISCLCNYG-----------RWSDASRLLSDMLERKIN 307
Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344
P+VV +N LID K ++ A +LFD+M ++ PN VTYNS I + + + +D+A ++
Sbjct: 308 PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQI 367
Query: 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
M + +P +Y +I+ C+A +V++ + ++ G V TY +
Sbjct: 368 FTLMVS-KDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFF 426
Query: 405 AAEEPSLLDDGLRKRIRDGIE 425
A + ++ + DG+
Sbjct: 427 QASDCDNAQMVFKQMVSDGVH 447
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 124/284 (43%), Gaps = 27/284 (9%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
F GN + + M G T + T L+ L + +EA+A RM C+
Sbjct: 145 FCHGNRISEAVALVDQMVEMGYQP--DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQ 202
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
PD+ Y VIN LC+ G + A LL +ME + DV Y+ +I S CKY
Sbjct: 203 PDLVTYGAVINGLCKRGEPDLALNLLNKMEKG--KIEADVVIYSTVIDSLCKY------- 253
Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
R + +A +LF M KG PDV Y+ LI C R A L DM ++ PN
Sbjct: 254 ----RHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPN 309
Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
VT+NS I ++ ++ +A ++ +M + P +Y +I+ C R+ EA+
Sbjct: 310 VVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID-PNIVTYNSLINGFCMHDRLDEAQQIF 368
Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
+V +P TY + + A K++ DG+E
Sbjct: 369 TLMVSKDCLPDVVTYNTLINGFCKA-----------KKVVDGME 401
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 17/210 (8%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
F + V + +DMSRRG LV T + T LI + + A F +M
Sbjct: 390 FCKAKKVVDGMELFRDMSRRG---LVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
P++ YN +++ LC+ G KA + E ++ + PD+YTY I+ CK G
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKS--KMEPDIYTYNIMSEGMCKAG----- 499
Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
++ + LF + KG PDV+AYN +I G CK E A LF M + G +P
Sbjct: 500 ------KVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLP 553
Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
+ TYN+ IR + + + E++++M++
Sbjct: 554 DSGTYNTLIRAHLRDGDKAASAELIKEMRS 583
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 18/231 (7%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M+ ++Y YN++IN LCR + A +L +M G+ P + T L++ +C
Sbjct: 90 KMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGY--GPSIVTLNSLLNGFCH 147
Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
RI EA L M+ G+ PD V + L+ G + + A+ L + M
Sbjct: 148 -----------GNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM 196
Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
KGC P+ VTY + I E D A+ ++ KM+ Y+ +I +LC+
Sbjct: 197 VVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEK-GKIEADVVIYSTVIDSLCKYRH 255
Query: 374 VLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRI 420
V +A + E+ + G P +TY +C+ ++ LL D L ++I
Sbjct: 256 VDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKI 306
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
G ++ YN +I+ C+ ++ AL + M K G P+ VT NS + + N I +A
Sbjct: 95 GVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEA 154
Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
+ ++ +M + + P + ++T ++H L + + EA + +V G P TY V +
Sbjct: 155 VALVDQMVEMGYQ-PDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVIN 213
Query: 402 ALNAAEEPSLLDDGLRKRIRDGIE 425
L EP L + L K + IE
Sbjct: 214 GLCKRGEPDLALNLLNKMEKGKIE 237
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 124/250 (49%), Gaps = 11/250 (4%)
Query: 160 RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219
+RG G + + T ++ + GL+ +A F M++ C P+V Y +I+A +
Sbjct: 510 KRG-GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKK 568
Query: 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG-MQTGC----RKAIRRRIWEANHL 274
+ A L E M G C P++ TY+ LI +CK G ++ C R + + + +
Sbjct: 569 VSYANELFETMLSEG--CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 626
Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
F+ P+VV Y L+DG CK++R+E A +L D M+ +GC PN++ Y++ I
Sbjct: 627 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686
Query: 335 VNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
V ++D+A E+ +M HG P T +Y+ +I + R A L+++++ P
Sbjct: 687 VGKLDEAQEVKTEMS--EHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNV 744
Query: 394 YTYKLVCDAL 403
Y + D L
Sbjct: 745 VIYTEMIDGL 754
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G + TS+ + ++ L + A F MK+ DVY Y +++++ C+ G
Sbjct: 476 GQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIE 535
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
+AR +M G C P+V TYT LI +Y K +++ AN LF ML +
Sbjct: 536 QARKWFNEMREVG--CTPNVVTYTALIHAYLK-----------AKKVSYANELFETMLSE 582
Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI----------------PNRVTY 325
G +P++V Y+ LIDG CK ++E+A ++F+ M + PN VTY
Sbjct: 583 GCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTY 642
Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
+ + + + +++A +++ M ++ P Y +I LC+ G++ EA++ E+
Sbjct: 643 GALLDGFCKSHRVEEARKLLDAM-SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMS 701
Query: 386 DGGSVPREYTYKLVCD 401
+ G YTY + D
Sbjct: 702 EHGFPATLYTYSSLID 717
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 18/233 (7%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V EA M C P+ Y+ +I+ LC+VG ++A+ + +M GF P +YTY
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGF--PATLYTY 712
Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
+ LI Y K Q K + + ML P+VV Y +IDG CK + +
Sbjct: 713 SSLIDRYFKVKRQDLASKVLSK-----------MLENSCAPNVVIYTEMIDGLCKVGKTD 761
Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTP 363
A +L M +KGC PN VTY + I + ++ +I+ +E++ +M + GV P +Y
Sbjct: 762 EAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG--SKGVAPNYVTYRV 819
Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA--EEPSLLDD 414
+I C+ G + A + L E+ Y+ V + N E LLD+
Sbjct: 820 LIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDE 872
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 150/382 (39%), Gaps = 54/382 (14%)
Query: 39 TQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLG 98
TQ+ ++AD + + F + + RQ FR + E+ I L+
Sbjct: 95 TQSSIDARAIADAVSGVDDVFGRKSQKFLRQ--FREKL--------SESLVIEVLRLIAR 144
Query: 99 PAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDM 158
P+A F+ W R + H + + R ++ K +FL+ +
Sbjct: 145 PSA-------------VISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQI 191
Query: 159 SRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218
R + + V + L++ G + AL R+K FR RP YN +I A +
Sbjct: 192 --RDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKAD 249
Query: 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
+ A + +M L R D +T S CK G R+A+ L+
Sbjct: 250 RLDSASLIHREMSLANLRM--DGFTLRCFAYSLCKVGKW---REALT-----------LV 293
Query: 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
+ FVPD V Y LI G C+ E A++ + M C+PN VTY++ + ++
Sbjct: 294 ETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQL 353
Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
+ ++ M + P+ + ++HA C +G A L ++V G +P Y +
Sbjct: 354 GRCKRVLNMMM-MEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNI 412
Query: 399 V------------CDALNAAEE 408
+ CD L+ AE+
Sbjct: 413 LIGSICGDKDSLNCDLLDLAEK 434
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 33/233 (14%)
Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
C P +N +++A C G+ + A LL++M G P Y ILI S C
Sbjct: 368 CYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHM--PGYVVYNILIGSICGDKDSLN 425
Query: 260 C------RKAIRRRIW------------------------EANHLFRLMLFKGFVPDVVA 289
C KA + +A + R M+ +GF+PD
Sbjct: 426 CDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485
Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
Y+ +++ C ++E A LF++M + G + + TY + + I++A + +M+
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMR 545
Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
+ P +YT +IHA +A +V A + ++ G +P TY + D
Sbjct: 546 EVG-CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDG 597
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 114/282 (40%), Gaps = 35/282 (12%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T LI L E L EA+ RM+ C P+V Y+ ++ + + +L M +
Sbjct: 306 TKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMM 365
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL------------------ 274
G C P + L+ +YC G + K +++ + + H+
Sbjct: 366 EG--CYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMV-KCGHMPGYVVYNILIGSICGDKD 422
Query: 275 -------------FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
+ ML G V + + + C + E+A + +M +G IP+
Sbjct: 423 SLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPD 482
Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
TY+ + Y ++++ A + +M+ V +YT ++ + C+AG + +AR +
Sbjct: 483 TSTYSKVLNYLCNASKMELAFLLFEEMKR-GGLVADVYTYTIMVDSFCKAGLIEQARKWF 541
Query: 382 AELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
E+ + G P TY + A A++ S ++ + +G
Sbjct: 542 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEG 583
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 97/240 (40%), Gaps = 30/240 (12%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T +I L + G +EA M++ C+P+V Y +I+ +G LLE+M
Sbjct: 748 TEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGS 807
Query: 233 PGFRCPPDVYTYTILISSYCKYGM-------------------QTGCRKAIR---RRIWE 270
G P+ TY +LI CK G G RK I + E
Sbjct: 808 KGV--APNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIE 865
Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN--KKGCIPNRVTYNSF 328
+ L + P + Y LID K R+E AL L +++ + TYNS
Sbjct: 866 SLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSL 925
Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA---RDFLAELV 385
I + N+++ A ++ +M +P S+ +I L ++ EA DF++ +V
Sbjct: 926 IESLCLANKVETAFQLFSEMTK-KGVIPEMQSFCSLIKGLFRNSKISEALLLLDFISHMV 984
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 135/316 (42%), Gaps = 29/316 (9%)
Query: 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSS 171
L+KA E Y +V +D + + C + + + + +M RG+ V S
Sbjct: 150 LSKAVEIYDYVVELYDSVPDVIACNSLLSLLVKSRRLGDARKVYDEMCDRGDS--VDNYS 207
Query: 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
L+K + EG V C P++ YN +I C++G+ A + ++++
Sbjct: 208 TCILVKGMCNEGKVEVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELK 267
Query: 232 LPGFRCPPDVYTYTILISSYCKYG--------MQTGCRKAIRRRIWEANHLFRLMLFKGF 283
L GF P + T+ +I+ +CK G + + +R +W N++ G+
Sbjct: 268 LKGFM--PTLETFGTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGY 325
Query: 284 V----------------PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
PDV YN LI+ CK + E A+ D+ +KKG IPN ++Y
Sbjct: 326 KVDPAESIGWIIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAP 385
Query: 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
I+ Y E D A +++ +M P +Y +IH L +G + +A + +L+D
Sbjct: 386 LIQAYCKSKEYDIASKLLLQMAERGCK-PDIVTYGILIHGLVVSGHMDDAVNMKVKLIDR 444
Query: 388 GSVPREYTYKLVCDAL 403
G P Y ++ L
Sbjct: 445 GVSPDAAIYNMLMSGL 460
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 121/263 (46%), Gaps = 18/263 (6%)
Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
L M+ RG + T + LI L G +++A+ ++ PD YN++++
Sbjct: 402 LLLQMAERGCKPDIVTYGI--LIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSG 459
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
LC+ G F A+ L +M PD Y Y LI + + G EA
Sbjct: 460 LCKTGRFLPAKLLFSEM--LDRNILPDAYVYATLIDGFIRSG-----------DFDEARK 506
Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
+F L + KG DVV +N +I G C++ ++ AL + MN++ +P++ TY++ I Y
Sbjct: 507 VFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYV 566
Query: 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393
++ AI++ R M+ N P +YT +I+ C G A + E+ VP
Sbjct: 567 KQQDMATAIKIFRYMEK-NKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNV 625
Query: 394 YTYKLVCDALNAAEEPSLLDDGL 416
TY + +L A+E S L+ +
Sbjct: 626 VTYTTLIRSL--AKESSTLEKAV 646
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 91/238 (38%), Gaps = 54/238 (22%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
A+ F M++ +C+P+V Y +IN C G+F A ++M+L P+V TYT L
Sbjct: 574 AIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDL--VPNVVTYTTL 631
Query: 248 ISSYCKYG----------------------------MQTGCRKAIRRRIWE---ANH--- 273
I S K +Q +K + + E +NH
Sbjct: 632 IRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQS 691
Query: 274 -----LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328
F M G+ AYN + C ++ A D M KKG P+ V++ +
Sbjct: 692 SLFSEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKKGFSPDPVSFAAI 751
Query: 329 IRYYSVVNEIDKAIEMMRKMQNLN---HGVPTSSSYTPIIH------ALCEAGRVLEA 377
+ + VV + R M N G+ + Y+ ++ +CEA +L A
Sbjct: 752 LHGFCVVGN----SKQWRNMDFCNLGEKGLEVAVRYSQVLEQHLPQPVICEASTILHA 805
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 47/256 (18%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-------------- 230
+++AL F M RPDV+ Y+ +I+ LC G ++ A LL M
Sbjct: 274 MDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 333
Query: 231 -------------------ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271
E+ PD++TY+ LI+ +C + R+ EA
Sbjct: 334 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC-----------MHDRLDEA 382
Query: 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331
H+F LM+ K P+VV Y+ LI G CK R+E +ELF +M+++G + N VTY + I
Sbjct: 383 KHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHG 442
Query: 332 YSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
+ + D A + ++M ++ GV P +Y ++ LC+ G++ +A L
Sbjct: 443 FFQARDCDNAQMVFKQMVSV--GVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME 500
Query: 391 PREYTYKLVCDALNAA 406
P YTY ++ + + A
Sbjct: 501 PDIYTYNIMIEGMCKA 516
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 126/294 (42%), Gaps = 62/294 (21%)
Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + T LI L +EA+A +M Q C+PD+ Y V+N LC+ G+ + A LL+
Sbjct: 188 TFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLK 247
Query: 229 QMEL-----------------------------------PGFRCPPDVYTYTILISSYCK 253
+ME G R PDV+TY+ LIS C
Sbjct: 248 KMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIR--PDVFTYSSLISCLCN 305
Query: 254 YGMQTGCRK----AIRRRI--------------------WEANHLFRLMLFKGFVPDVVA 289
YG + + I R+I EA L+ M+ + PD+
Sbjct: 306 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 365
Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
Y+ LI+G C R++ A +F+ M K C PN VTY++ I+ + +++ +E+ R+M
Sbjct: 366 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMS 425
Query: 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
V + +YT +IH +A A+ ++V G P TY ++ D L
Sbjct: 426 QRGL-VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGL 478
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 117/249 (46%), Gaps = 19/249 (7%)
Query: 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLV 185
D F N +T + F + V+ + ++MS+RG LV T + T LI +
Sbjct: 393 DCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRG---LVGNTVTYTTLIHGFFQARDC 449
Query: 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245
+ A F +M P++ YN++++ LC+ G KA + E ++ PD+YTY
Sbjct: 450 DNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME--PDIYTYN 507
Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
I+I CK G ++ + LF + KG P+V+AYN +I G C+ E
Sbjct: 508 IMIEGMCKAG-----------KVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEE 556
Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365
A L M + G +PN TYN+ IR + + + E++++M++ G +S ++
Sbjct: 557 ADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSC--GFAGDASTIGLV 614
Query: 366 HALCEAGRV 374
+ GR+
Sbjct: 615 TNMLHDGRL 623
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 20/238 (8%)
Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
ALA +M + PD+ + ++N C + A L++QM G++ PD +T+T L
Sbjct: 137 ALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYK--PDTFTFTTL 194
Query: 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERAL 307
I +G+ + + EA L M+ +G PD+V Y +++G CK I+ AL
Sbjct: 195 I-----HGL------FLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243
Query: 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIH 366
L M K + V YN+ I +D A+ + +M N G+ P +Y+ +I
Sbjct: 244 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMD--NKGIRPDVFTYSSLIS 301
Query: 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL----NAAEEPSLLDDGLRKRI 420
LC GR +A L+++++ P T+ + DA E L D+ +++ I
Sbjct: 302 CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 359
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 18/231 (7%)
Query: 194 RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
+M+ D+Y Y++ IN CR + A +L +M G+ PD+ T + L++ YC
Sbjct: 108 QMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYE--PDIVTLSSLLNGYCH 165
Query: 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
+RI +A L M+ G+ PD + LI G + A+ L D M
Sbjct: 166 -----------SKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQM 214
Query: 314 NKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373
++GC P+ VTY + + +ID A+ +++KM+ Y II LC+
Sbjct: 215 VQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVIYNTIIDGLCKYKH 273
Query: 374 VLEARDFLAELVDGGSVPREYTY----KLVCDALNAAEEPSLLDDGLRKRI 420
+ +A + E+ + G P +TY +C+ ++ LL D + ++I
Sbjct: 274 MDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKI 324
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 18/214 (8%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
+++A+A +M + +PD + + +I+ L ++A L++QM G C PD+ TY
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG--CQPDLVTY 226
Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
+++ CK G I A L + M DVV YN +IDG CK ++
Sbjct: 227 GTVVNGLCKRG-----------DIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMD 275
Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM--QNLNHGVPTSSSYT 362
AL LF +M+ KG P+ TY+S I A ++ M + +N P +++
Sbjct: 276 DALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKIN---PNVVTFS 332
Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
+I A + G+++EA E++ P +TY
Sbjct: 333 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 366
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 15/242 (6%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
+ LIK + V E + F M Q + Y +I+ + + + A+ + +QM
Sbjct: 402 STLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 461
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
G P++ TY IL+ CK G ++ +A +F + PD+ YN
Sbjct: 462 VGVH--PNILTYNILLDGLCKNG-----------KLAKAMVVFEYLQRSTMEPDIYTYNI 508
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
+I+G CK ++E ELF +++ KG PN + YN+ I + ++A +++KM+ +
Sbjct: 509 MIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKE-D 567
Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE-EPSL 411
+P S +Y +I A G + + + E+ G T LV + L+ + S
Sbjct: 568 GPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKSF 627
Query: 412 LD 413
LD
Sbjct: 628 LD 629
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 49/241 (20%)
Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
V++A+ F M + R P + +N +++A+ ++ F L EQM+ G D+YTY
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGI--SHDLYTY 121
Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
+I I+ +C+ R ++ A + M+ G+ PD+V + L++G C + RI
Sbjct: 122 SIFINCFCR-----------RSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRIS 170
Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364
A+ L +D+ +EM K P + ++T +
Sbjct: 171 DAVAL----------------------------VDQMVEMGYK--------PDTFTFTTL 194
Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
IH L + EA + ++V G P TY V + L + L L+K + I
Sbjct: 195 IHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKI 254
Query: 425 E 425
E
Sbjct: 255 E 255
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 37/155 (23%)
Query: 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL--NHGVPTSS 359
+++ A++LF DM K P+ V +N + + +N+ + I + +MQ L +H + T S
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 360 -------------------------SYTP-------IIHALCEAGRVLEARDFLAELVDG 387
Y P +++ C + R+ +A + ++V+
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 388 GSVPREYTYKLVCDAL---NAAEEPSLLDDGLRKR 419
G P +T+ + L N A E L D + +R
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR 217
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 110/240 (45%), Gaps = 16/240 (6%)
Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G +V T + L+ L E G ++EA + C D +YN +I+ C ++A
Sbjct: 513 GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEA 572
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
L++M G + PD YTY+ILI C ++ EA + G
Sbjct: 573 FMFLDEMVKRGLK--PDNYTYSILI-----------CGLFNMNKVEEAIQFWDDCKRNGM 619
Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
+PDV Y+ +IDGCCK R E E FD+M K PN V YN IR Y + A+E
Sbjct: 620 LPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALE 679
Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
+ M+ + G+ P S++YT +I + RV EA+ E+ G P + Y + D
Sbjct: 680 LREDMK--HKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDG 737
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 122/274 (44%), Gaps = 25/274 (9%)
Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
G G ++ S LI + ++EA M + +PD Y Y+++I L +
Sbjct: 546 GRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVE 605
Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
+A + + G PDVYTY+++I CK R E F M+ K
Sbjct: 606 EAIQFWDDCKRNGML--PDVYTYSVMIDGCCK-----------AERTEEGQEFFDEMMSK 652
Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
P+ V YN LI C++ R+ ALEL +DM KG PN TY S I+ S+++ +++A
Sbjct: 653 NVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEA 712
Query: 342 ---IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398
E MR M+ L P YT +I + G++++ L E+ P + TY +
Sbjct: 713 KLLFEEMR-MEGLE---PNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTV 768
Query: 399 VCDAL----NAAEEPSLLDDGLRKRIR-DGIEYR 427
+ N E LL++ K I D I Y+
Sbjct: 769 MIGGYARDGNVTEASRLLNEMREKGIVPDSITYK 802
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 14/213 (6%)
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
T I + G V EA+ F +M++ P+V +N VI+ L G +++A E+M
Sbjct: 277 TTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE 336
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
G P + TY+IL+ G +A +RI +A + + M KGF P+V+ YN
Sbjct: 337 RGME--PTLITYSILVK---------GLTRA--KRIGDAYFVLKEMTKKGFPPNVIVYNN 383
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
LID + + +A+E+ D M KG TYN+ I+ Y + D A ++++M ++
Sbjct: 384 LIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIG 443
Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
V S+T +I LC A F+ E++
Sbjct: 444 FNV-NQGSFTSVICLLCSHLMFDSALRFVGEML 475
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 16/188 (8%)
Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
PDVY + INA C+ G +A L +ME G P+V T+ +I G
Sbjct: 271 PDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGV--APNVVTFNTVIDGLGMCG------ 322
Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
R EA M+ +G P ++ Y+ L+ G + RI A + +M KKG PN
Sbjct: 323 -----RYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPN 377
Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDF 380
+ YN+ I + ++KAIE+ M ++ G+ TSS+Y +I C+ G+ A
Sbjct: 378 VIVYNNLIDSFIEAGSLNKAIEIKDLM--VSKGLSLTSSTYNTLIKGYCKNGQADNAERL 435
Query: 381 LAELVDGG 388
L E++ G
Sbjct: 436 LKEMLSIG 443
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 102/232 (43%), Gaps = 16/232 (6%)
Query: 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY 205
N V+ F D R NG L + + +I + E F M +P+
Sbjct: 602 NKVEEAIQFWDDCKR--NGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTV 659
Query: 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265
YN +I A CR G + A L E M+ G P+ TYT LI GM +I
Sbjct: 660 VYNHLIRAYCRSGRLSMALELREDMKHKGI--SPNSATYTSLIK-----GM------SII 706
Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
R+ EA LF M +G P+V Y LIDG K ++ + L +M+ K PN++TY
Sbjct: 707 SRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITY 766
Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
I Y+ + +A ++ +M+ VP S +Y I+ + G VLEA
Sbjct: 767 TVMIGGYARDGNVTEASRLLNEMRE-KGIVPDSITYKEFIYGYLKQGGVLEA 817
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 127/295 (43%), Gaps = 32/295 (10%)
Query: 164 GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223
G +T+S+ LIK + G + A M + ++ VI LC F+ A
Sbjct: 408 GLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSA 467
Query: 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283
+ +M L P T LIS CK+G + +A L+ L KGF
Sbjct: 468 LRFVGEMLLRNM--SPGGGLLTTLISGLCKHGKHS-----------KALELWFQFLNKGF 514
Query: 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
V D N L+ G C+ +++ A + ++ +GC+ +RV+YN+ I ++D+A
Sbjct: 515 VVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFM 574
Query: 344 MMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV--- 399
+ +M + G+ P + +Y+ +I L +V EA F + G +P YTY ++
Sbjct: 575 FLDEM--VKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDG 632
Query: 400 -CDALNAAEEPSLLDDGLRKRIR-DGIEY-----------RFRQVMKVKPIMKHK 441
C A E D+ + K ++ + + Y R ++++ MKHK
Sbjct: 633 CCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHK 687
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 111/277 (40%), Gaps = 32/277 (11%)
Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
F + M RG + T S+ L+K L + +A M + P+V YN +I++
Sbjct: 330 FKEKMVERGMEPTLITYSI--LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDS 387
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI----- 268
G+ NKA + + M G TY LI YCK G + ++ +
Sbjct: 388 FIEAGSLNKAIEIKDLMVSKGLSLTSS--TYNTLIKGYCKNGQADNAERLLKEMLSIGFN 445
Query: 269 -----------WEANHL-----FRL---MLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309
+HL R ML + P LI G CK + +ALEL
Sbjct: 446 VNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALEL 505
Query: 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHAL 368
+ KG + + T N+ + ++D+A + +++ L G V SY +I
Sbjct: 506 WFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEI--LGRGCVMDRVSYNTLISGC 563
Query: 369 CEAGRVLEARDFLAELVDGGSVPREYTYK-LVCDALN 404
C ++ EA FL E+V G P YTY L+C N
Sbjct: 564 CGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFN 600
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 3/127 (2%)
Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340
KG PDV + I+ CK ++E A++LF M + G PN VT+N+ I + D+
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE 326
Query: 341 AIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
A KM + G+ PT +Y+ ++ L A R+ +A L E+ G P Y +
Sbjct: 327 AFMFKEKM--VERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNL 384
Query: 400 CDALNAA 406
D+ A
Sbjct: 385 IDSFIEA 391
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 15/179 (8%)
Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ R + + +DM +G +++ T LIK + V EA F M+
Sbjct: 667 AYCRSGRLSMALELREDMKHKGISP--NSATYTSLIKGMSIISRVEEAKLLFEEMRMEGL 724
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
P+V+ Y +I+ ++G K LL +M P+ TYT++I Y + G
Sbjct: 725 EPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVH--PNKITYTVMIGGYARDG----- 777
Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
+ EA+ L M KG VPD + Y I G K + A + D+ N I
Sbjct: 778 ------NVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDEENYAAII 830
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 12/163 (7%)
Query: 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305
+LI YC + GC A+ +F ++ KG P N L+ + ++
Sbjct: 206 LLIEVYCTQFKRDGCYLAL--------DVFPVLANKGMFPSKTTCNILLTSLVRANEFQK 257
Query: 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPI 364
E FD + K G P+ + + I + ++++A+++ KM+ GV P ++ +
Sbjct: 258 CCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEE--AGVAPNVVTFNTV 314
Query: 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
I L GR EA F ++V+ G P TY ++ L A+
Sbjct: 315 IDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAK 357
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 131/266 (49%), Gaps = 25/266 (9%)
Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+LK M +G L + S +I L + + A M+ P++ +N ++
Sbjct: 412 YLKQMGV--DGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSG 469
Query: 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273
G+ K +LE++ + GF+ PDV T++++I+ C+ + I +A
Sbjct: 470 YSVRGDVKKVHGVLEKLLVHGFK--PDVITFSLIINCLCR-----------AKEIKDAFD 516
Query: 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333
F+ ML G P+ + YN LI CC T +R+++LF M + G P+ YN+ I+ +
Sbjct: 517 CFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFC 576
Query: 334 VVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
+ ++ KA E+++ M L G+ P + +Y+ +I AL E+GR EAR+ + + G VP
Sbjct: 577 KMRKVKKAEELLKTM--LRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPD 634
Query: 393 EYTYKLVCDALNAAEEPSLLDDGLRK 418
YT +LV EE L GL +
Sbjct: 635 SYTKRLV-------EELDLRKSGLSR 653
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 116/284 (40%), Gaps = 25/284 (8%)
Query: 118 FYHWVERFFDFFHNEMTCKE-MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLI 176
FY WV F + + + K +G R + + LK++ R +G ++ + LI
Sbjct: 95 FYLWVSNFDPVYAKDQSLKSVLGNALFRKGPLLLSMELLKEI--RDSGYRISDELMCVLI 152
Query: 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236
G GL F ++ +P YN VI+AL + + + A +QM G
Sbjct: 153 GSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDG-- 210
Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296
C PD +TY ILI CK G+ + EA L + M +G P+V Y LIDG
Sbjct: 211 CKPDRFTYNILIHGVCKKGV-----------VDEAIRLVKQMEQEGNRPNVFTYTILIDG 259
Query: 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFI----RYYSVVNEIDKAIEMMRKMQNLN 352
R++ AL+ + M + PN T +F+ R + + M K NL
Sbjct: 260 FLIAGRVDEALKQLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQ 319
Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
Y +++ L E FL ++ + G +P T+
Sbjct: 320 R-----VGYDAVLYCLSNNSMAKETGQFLRKIGERGYIPDSSTF 358
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
+R E + + M G + V +YN +ID CK RIE A +M +G PN VT+
Sbjct: 404 QRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTF 463
Query: 326 NSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAEL 384
N+F+ YSV ++ K ++ K+ L HG P +++ II+ LC A + +A D E+
Sbjct: 464 NTFLSGYSVRGDVKKVHGVLEKL--LVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEM 521
Query: 385 VDGGSVPREYTYKLV 399
++ G P E TY ++
Sbjct: 522 LEWGIEPNEITYNIL 536
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 114/257 (44%), Gaps = 14/257 (5%)
Query: 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLL 227
+T +I L + ++ A F +M+ C+PD + YN++I+ +C+ G ++A L+
Sbjct: 179 STRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLV 238
Query: 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
+QME G R P+V+TYTILI + G R+ EA +M + P+
Sbjct: 239 KQMEQEGNR--PNVFTYTILIDGFLIAG-----------RVDEALKQLEMMRVRKLNPNE 285
Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347
+ G + +A E+ +K RV Y++ + S + + + +RK
Sbjct: 286 ATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETGQFLRK 345
Query: 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407
+ + +P SS++ + L + ++E V G P Y ++ AL A+
Sbjct: 346 IGERGY-IPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQ 404
Query: 408 EPSLLDDGLRKRIRDGI 424
S D L++ DG+
Sbjct: 405 RFSEGDRYLKQMGVDGL 421
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 108/265 (40%), Gaps = 23/265 (8%)
Query: 154 FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213
+LK R +G + LI + ++G+V+EA+ +M+Q RP+V+ Y ++I+
Sbjct: 200 YLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDG 259
Query: 214 LCRVGNFNKARFLLEQMEL----PG-----------FRCPPDVYTYTILISSYCK-YGMQ 257
G ++A LE M + P FRC P + +L+ K +Q
Sbjct: 260 FLIAGRVDEALKQLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQ 319
Query: 258 TGCRKAI------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
A+ E R + +G++PD +N + K + + +FD
Sbjct: 320 RVGYDAVLYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFD 379
Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
+G P Y ++ + +++M ++ + + SY +I LC+A
Sbjct: 380 GFVSRGVKPGFNGYLVLVQALLNAQRFSEGDRYLKQM-GVDGLLSSVYSYNAVIDCLCKA 438
Query: 372 GRVLEARDFLAELVDGGSVPREYTY 396
R+ A FL E+ D G P T+
Sbjct: 439 RRIENAAMFLTEMQDRGISPNLVTF 463
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 136/298 (45%), Gaps = 19/298 (6%)
Query: 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172
N F+ W + +FH+ CK M ++ ++ +W +++M R+ N EL+
Sbjct: 112 NLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEM-RKTNPELIEPELF 170
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
L++ +V +A+ M ++ PD Y + +++ALC+ G+ +A + E M
Sbjct: 171 VVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE 230
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
+ PP++ +T L+ +C+ G ++ EA + M G PD+V +
Sbjct: 231 ---KFPPNLRYFTSLLYGWCREG-----------KLMEAKEVLVQMKEAGLEPDIVVFTN 276
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE-IDKAIEMMRKMQNL 351
L+ G ++ A +L +DM K+G PN Y I+ + +D+A+ + +M+
Sbjct: 277 LLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEME-- 334
Query: 352 NHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
+G +YT +I C+ G + + L ++ G +P + TY + A E+
Sbjct: 335 RYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQ 392
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 125/302 (41%), Gaps = 54/302 (17%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE-EGLVNEALATFYRMKQFRC 200
+A + +D + DM +RG V +V LI+ L E ++EA+ F M+++ C
Sbjct: 281 YAHAGKMADAYDLMNDMRKRGFEPNVNCYTV--LIQALCRTEKRMDEAMRVFVEMERYGC 338
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
D+ Y +I+ C+ G +K +L+ M G P TY ++ ++ K
Sbjct: 339 EADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVM--PSQVTYMQIMVAHEK------- 389
Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
+ + E L M +G PD++ YN +I CK ++ A+ L+++M G P
Sbjct: 390 ----KEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSP 445
Query: 321 NRVTYNSFIRYY-------------------------------SVVNEI--DKAIEMMRK 347
T+ I + S++N + D +EM +
Sbjct: 446 GVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKD 505
Query: 348 MQNLNHGVPTS-----SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402
+ + +S S++T IHAL G V EA + ++++ +P+ TY +
Sbjct: 506 VWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEACSYCLDMMEMDLMPQPNTYAKLMKG 565
Query: 403 LN 404
LN
Sbjct: 566 LN 567
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 126/285 (44%), Gaps = 18/285 (6%)
Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSV-TCLIKVLGEEGLVNEALATFYRMKQFRC 200
+ R + +W ++ M R+G L S + +I +L + EA F M +
Sbjct: 291 YCRFGELDKVWKLIEVMKRKG---LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGI 347
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
PD Y +I+ C+ G+ A +M PDV TYT +IS +C+ G
Sbjct: 348 LPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDI--TPDVLTYTAIISGFCQIG----- 400
Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
+ EA LF M KG PD V + LI+G CK ++ A + + M + GC P
Sbjct: 401 ------DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSP 454
Query: 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
N VTY + I ++D A E++ +M + P +Y I++ LC++G + EA
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ-PNIFTYNSIVNGLCKSGNIEEAVKL 513
Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425
+ E G TY + DA + E + L++ + G++
Sbjct: 514 VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ 558
Score = 105 bits (262), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 14/229 (6%)
Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
+ T LI L +EG ++ A + M + +P+++ YN ++N LC+ GN +A L+ +
Sbjct: 458 TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 517
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
E G D TYT L+ +YCK G + +A + + ML KG P +V +
Sbjct: 518 EAAGLN--ADTVTYTTLMDAYCKSG-----------EMDKAQEILKEMLGKGLQPTIVTF 564
Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
N L++G C +E +L + M KG PN T+NS ++ Y + N + A + + M +
Sbjct: 565 NVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCS 624
Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
G P +Y ++ C+A + EA E+ G TY ++
Sbjct: 625 RGVG-PDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVL 672
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 16/235 (6%)
Query: 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQ 229
+S +I + + G + EA M+ PDV +Y+ V+N CR G +K L+E
Sbjct: 247 ASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEV 306
Query: 230 MELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289
M+ G + P+ Y Y +I C+ C+ A EA F M+ +G +PD V
Sbjct: 307 MKRKGLK--PNSYIYGSIIGLLCRI-----CKLA------EAEEAFSEMIRQGILPDTVV 353
Query: 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
Y LIDG CK I A + F +M+ + P+ +TY + I + + ++ +A ++ +M
Sbjct: 354 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM- 412
Query: 350 NLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
G+ P S ++T +I+ C+AG + +A ++ G P TY + D L
Sbjct: 413 -FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 466
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
+VL + GL+ EA F +M + V + NV + L + + A ++ E P
Sbjct: 181 FFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSK-DCYKTATAIIVFREFPE 239
Query: 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294
+V +Y I+I C+ G RI EA+HL LM KG+ PDV++Y+ ++
Sbjct: 240 VGVCWNVASYNIVIHFVCQLG-----------RIKEAHHLLLLMELKGYTPDVISYSTVV 288
Query: 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354
+G C+ +++ +L + M +KG PN Y S I + ++ +A E +M + G
Sbjct: 289 NGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM--IRQG 346
Query: 355 V-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399
+ P + YT +I C+ G + A F E+ P TY +
Sbjct: 347 ILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAI 392
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 33/206 (16%)
Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
T + T L+ + G +++A M +P + +NV++N C G LL
Sbjct: 526 TVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 585
Query: 229 QMELPGFRCPPDVYTYTILISSYC-KYGMQTG-------CRKAI---------------- 264
M G P+ T+ L+ YC + ++ C + +
Sbjct: 586 WMLAKGI--APNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCK 643
Query: 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324
R + EA LF+ M KGF V Y+ LI G K + A E+FD M ++G ++
Sbjct: 644 ARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEI 703
Query: 325 YNSFI-------RYYSVVNEIDKAIE 343
++ F R ++V+ ID+ IE
Sbjct: 704 FDFFSDTKYKGKRPDTIVDPIDEIIE 729
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 2/156 (1%)
Query: 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKT-YRIERALELFDDMNKKGCIPNRVTYNSF 328
EA +F ML G V V + N + K Y+ A+ +F + + G N +YN
Sbjct: 193 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIV 252
Query: 329 IRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388
I + + I +A ++ M+ L P SY+ +++ C G + + + + G
Sbjct: 253 IHFVCQLGRIKEAHHLLLLME-LKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311
Query: 389 SVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424
P Y Y + L + + ++ + IR GI
Sbjct: 312 LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGI 347
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 131/286 (45%), Gaps = 16/286 (5%)
Query: 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197
+GI F G K L D ++M R G V T T LIK LG+ G V+EA + M +
Sbjct: 275 LGIYFKVGKVEKAL-DLFEEMKRAGCSPTVYT--YTELIKGLGKAGRVDEAYGFYKDMLR 331
Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
PDV N ++N L +VG + + +M + +RC P V +Y +I + +
Sbjct: 332 DGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGM--WRCTPTVVSYNTVIKALFES--- 386
Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
+ + E + F M P Y+ LIDG CKT R+E+AL L ++M++KG
Sbjct: 387 -------KAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKG 439
Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
P Y S I + A E+ ++++ N G +S Y +I + G++ EA
Sbjct: 440 FPPCPAAYCSLINALGKAKRYEAANELFKELKE-NFGNVSSRVYAVMIKHFGKCGKLSEA 498
Query: 378 RDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
D E+ + GS P Y Y + + A + + LRK +G
Sbjct: 499 VDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENG 544
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 130/352 (36%), Gaps = 76/352 (21%)
Query: 122 VERFFDFFHNEMTCKEMGIVFARGNNVKGL---------WDFLKDMSRRGNGELVTTSSV 172
VE+ D F V+ +KGL + F KDM R G V +
Sbjct: 284 VEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVF--L 341
Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL------------------ 214
L+ +LG+ G V E F M +RC P V +YN VI AL
Sbjct: 342 NNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK 401
Query: 215 ------------------CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK--- 253
C+ KA LLE+M+ GF PP Y LI++ K
Sbjct: 402 ADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGF--PPCPAAYCSLINALGKAKR 459
Query: 254 YGMQTGCRKAIRR---------------------RIWEANHLFRLMLFKGFVPDVVAYNC 292
Y K ++ ++ EA LF M +G PDV AYN
Sbjct: 460 YEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNA 519
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
L+ G K I A L M + GC + ++N + ++ +AIEM +++
Sbjct: 520 LMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKH-- 577
Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
G+ P +Y ++ AG EA + E+ D G TY + DA+
Sbjct: 578 SGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAV 629
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 119/289 (41%), Gaps = 49/289 (16%)
Query: 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162
R ++ + +N +F+ W + +F H+ T + ++ ++++ R
Sbjct: 97 RSILEIDVEINVKIQFFKWAGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNT 156
Query: 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222
V+ + ++ L+K LG +V++AL+ FY+ K +C+P YN VI L + G K
Sbjct: 157 YVS-VSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEK 215
Query: 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282
+VYT C G C
Sbjct: 216 VH---------------EVYT------EMCNEG---DC---------------------- 229
Query: 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342
PD + Y+ LI K R + A+ LFD+M P Y + + Y V +++KA+
Sbjct: 230 -FPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKAL 288
Query: 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391
++ +M+ PT +YT +I L +AGRV EA F +++ G P
Sbjct: 289 DLFEEMKRAGCS-PTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTP 336
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 2/141 (1%)
Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDM-NKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343
P YN +I + + E+ E++ +M N+ C P+ +TY++ I Y + D AI
Sbjct: 195 PTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIR 254
Query: 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
+ +M++ N PT YT ++ + G+V +A D E+ G P YTY + L
Sbjct: 255 LFDEMKD-NCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGL 313
Query: 404 NAAEEPSLLDDGLRKRIRDGI 424
A + +RDG+
Sbjct: 314 GKAGRVDEAYGFYKDMLRDGL 334
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 43/104 (41%)
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
L+ + + +AL +F + C P TYNS I + +K E+ +M N
Sbjct: 168 LVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEG 227
Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
P + +Y+ +I + + GR A E+ D P E Y
Sbjct: 228 DCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIY 271
>sp|Q9FZ19|PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g02420
OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2
Length = 491
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/416 (22%), Positives = 173/416 (41%), Gaps = 59/416 (14%)
Query: 1 MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
M++ KPL+S H + N S + +E D +++ R
Sbjct: 2 MMILKPLSSHH-----------VSNFRLSVSFLHSVALSDAKVPVEEEGDDAETVFRMIN 50
Query: 61 QSPRSIG-----RQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKA 115
S + +G L R+LK+ ++ N + L
Sbjct: 51 GSNLQVELKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTL------------------ 92
Query: 116 TEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCL 175
EFY + F+H+ + M + R +W+ L + ++R + L++ ++ +
Sbjct: 93 -EFYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIWELLIE-TKRKDRSLISPRTMQVV 150
Query: 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVY---AYNVVINALCRVGNFNKARFLLEQMEL 232
+ + + V + + +F++ K R PD + +N ++ LC+ + AR + ++
Sbjct: 151 LGRVAKLCSVRQTVESFWKFK--RLVPDFFDTACFNALLRTLCQEKSMTDARNVYHSLK- 207
Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
+ PD+ T+ IL+S + + EA F M KG PDVV YN
Sbjct: 208 --HQFQPDLQTFNILLSGW--------------KSSEEAEAFFEEMKGKGLKPDVVTYNS 251
Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
LID CK IE+A +L D M ++ P+ +TY + I ++ + DKA E++++M+
Sbjct: 252 LIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYG 311
Query: 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408
P ++Y I C A R+ +A + E+V G P TY L L+ A +
Sbjct: 312 -CYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNLFFRVLSLAND 366
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 98/241 (40%), Gaps = 30/241 (12%)
Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
V+ + ++ + + M R E + T +I LG G ++A MK++ C
Sbjct: 255 VYCKDREIEKAYKLIDKM--REEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGC 312
Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI-------------- 246
PDV AYN I C A L+++M G P+ TY +
Sbjct: 313 YPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGL--SPNATTYNLFFRVLSLANDLGRS 370
Query: 247 ------LISSYCKYGMQTGCRKAIR-----RRIWEANHLFRLMLFKGFVPDVVAYNCLID 295
++ + C Q+ C I+ ++ A L+ M+ KGF + + L+D
Sbjct: 371 WELYVRMLGNECLPNTQS-CMFLIKMFKRHEKVDMAMRLWEDMVVKGFGSYSLVSDVLLD 429
Query: 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355
C ++E A + +M +KG P+ V++ + N+ D+ +++KM + +
Sbjct: 430 LLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRIKLLMELANKHDEVNNLIQKMAIFSTEI 489
Query: 356 P 356
P
Sbjct: 490 P 490
>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400,
mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2
SV=2
Length = 466
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 133/290 (45%), Gaps = 17/290 (5%)
Query: 115 ATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174
A E + + + +F H+ + + + RG + D L R +G +T T
Sbjct: 67 AKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLA--KHRSSGYPLTGEIFTY 124
Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL-CRVGNFNKARFLLEQMELP 233
LIKV E L + L+TFY+M +F P N +++ L G KA L + L
Sbjct: 125 LIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLH 184
Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293
G P+ +Y +L+ ++C + + A LF ML + VPDV +Y L
Sbjct: 185 GVM--PNTRSYNLLMQAFC-----------LNDDLSIAYQLFGKMLERDVVPDVDSYKIL 231
Query: 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353
I G C+ ++ A+EL DDM KG +P+R++Y + + ++ +A +++ +M+ L
Sbjct: 232 IQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMK-LKG 290
Query: 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
P Y +I C R ++AR L +++ G P +Y+ + L
Sbjct: 291 CNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGL 340
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 14/215 (6%)
Query: 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230
S LI+ +G VN A+ M PD +Y ++N+LCR +A LL +M
Sbjct: 227 SYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRM 286
Query: 231 ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290
+L G C PD+ Y +I +C+ R +A + ML G P+ V+Y
Sbjct: 287 KLKG--CNPDLVHYNTMILGFCR-----------EDRAMDARKVLDDMLSNGCSPNSVSY 333
Query: 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350
LI G C + + ++M KG P+ N ++ + ++++A +++ +
Sbjct: 334 RTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMK 393
Query: 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
N S ++ +I +C + + FL + V
Sbjct: 394 -NGETLHSDTWEMVIPLICNEDESEKIKLFLEDAV 427
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,624,587
Number of Sequences: 539616
Number of extensions: 6848822
Number of successful extensions: 26736
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 19438
Number of HSP's gapped (non-prelim): 2524
length of query: 451
length of database: 191,569,459
effective HSP length: 121
effective length of query: 330
effective length of database: 126,275,923
effective search space: 41671054590
effective search space used: 41671054590
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)