Query 013010
Match_columns 451
No_of_seqs 495 out of 2483
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 08:37:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.7E-51 1E-55 424.4 38.6 339 106-449 447-809 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 7.1E-51 1.5E-55 423.0 39.2 293 106-404 482-800 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 9.8E-47 2.1E-51 388.6 28.0 314 103-450 165-479 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.3E-44 2.8E-49 372.8 31.6 293 104-420 197-521 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.4E-44 3E-49 381.1 31.7 340 90-450 153-642 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 5.9E-43 1.3E-47 368.7 32.7 303 90-420 254-652 (857)
7 PRK11788 tetratricopeptide rep 99.9 7.5E-20 1.6E-24 176.9 34.3 300 107-427 46-352 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.8 4.1E-17 9E-22 174.5 36.2 296 102-424 573-868 (899)
9 PRK11788 tetratricopeptide rep 99.8 5.7E-17 1.2E-21 156.8 32.8 263 139-422 42-311 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 1.9E-16 4.1E-21 169.5 37.3 292 103-421 540-831 (899)
11 KOG4422 Uncharacterized conser 99.7 8.2E-15 1.8E-19 132.3 28.5 316 109-438 128-478 (625)
12 PRK15174 Vi polysaccharide exp 99.7 1.7E-13 3.6E-18 139.9 35.7 298 107-430 87-392 (656)
13 PRK15174 Vi polysaccharide exp 99.7 3E-13 6.5E-18 138.1 37.0 288 109-421 55-346 (656)
14 KOG4422 Uncharacterized conser 99.6 1E-12 2.2E-17 119.0 29.4 288 129-424 204-592 (625)
15 TIGR00990 3a0801s09 mitochondr 99.6 6.3E-12 1.4E-16 128.5 36.7 299 101-422 132-496 (615)
16 KOG4626 O-linked N-acetylgluco 99.6 9.7E-13 2.1E-17 124.2 25.7 286 94-409 216-506 (966)
17 KOG4626 O-linked N-acetylgluco 99.6 3.1E-13 6.7E-18 127.5 21.3 297 95-420 115-415 (966)
18 TIGR00990 3a0801s09 mitochondr 99.5 2.2E-11 4.7E-16 124.6 33.4 257 110-387 308-571 (615)
19 PRK11447 cellulose synthase su 99.5 5.2E-11 1.1E-15 129.9 37.1 299 105-420 360-738 (1157)
20 PF13429 TPR_15: Tetratricopep 99.5 1.4E-13 3.1E-18 126.5 13.2 255 106-384 18-274 (280)
21 PRK10747 putative protoheme IX 99.5 1.7E-10 3.8E-15 111.1 33.7 285 109-420 97-388 (398)
22 PRK11447 cellulose synthase su 99.5 1.4E-10 3.1E-15 126.5 36.9 118 297-422 583-700 (1157)
23 PF13429 TPR_15: Tetratricopep 99.5 3.1E-13 6.8E-18 124.2 13.4 261 137-420 13-275 (280)
24 PRK10049 pgaA outer membrane p 99.5 5.8E-10 1.2E-14 116.5 38.4 304 107-421 26-387 (765)
25 TIGR00540 hemY_coli hemY prote 99.5 5.4E-10 1.2E-14 108.3 34.4 292 107-420 95-397 (409)
26 PRK14574 hmsH outer membrane p 99.4 1.6E-09 3.4E-14 111.8 36.7 304 107-420 79-443 (822)
27 PRK10049 pgaA outer membrane p 99.4 1.8E-09 3.8E-14 112.9 37.2 297 104-421 57-421 (765)
28 PF13041 PPR_2: PPR repeat fam 99.4 6E-13 1.3E-17 87.0 6.4 50 285-334 1-50 (50)
29 PRK09782 bacteriophage N4 rece 99.4 2.6E-09 5.6E-14 112.5 36.7 289 109-421 389-705 (987)
30 KOG1126 DNA-binding cell divis 99.4 1.7E-10 3.7E-15 110.5 25.3 277 112-419 335-617 (638)
31 PF13041 PPR_2: PPR repeat fam 99.4 8.1E-13 1.8E-17 86.4 6.4 50 356-405 1-50 (50)
32 PRK14574 hmsH outer membrane p 99.4 4.8E-09 1E-13 108.2 35.9 291 106-421 44-395 (822)
33 PRK10747 putative protoheme IX 99.4 1.3E-09 2.9E-14 105.0 30.0 252 106-386 128-389 (398)
34 COG2956 Predicted N-acetylgluc 99.4 3.1E-09 6.8E-14 93.5 28.8 295 110-424 49-349 (389)
35 PRK09782 bacteriophage N4 rece 99.4 3.9E-09 8.4E-14 111.1 34.4 260 131-419 476-737 (987)
36 KOG4318 Bicoid mRNA stability 99.3 6.3E-11 1.4E-15 116.4 17.8 264 118-409 12-287 (1088)
37 TIGR02521 type_IV_pilW type IV 99.3 4.6E-09 9.9E-14 93.3 26.4 197 171-385 33-230 (234)
38 TIGR00540 hemY_coli hemY prote 99.3 6E-09 1.3E-13 101.0 29.0 258 105-385 127-397 (409)
39 TIGR02521 type_IV_pilW type IV 99.3 5.9E-09 1.3E-13 92.6 26.1 201 202-420 29-230 (234)
40 PRK12370 invasion protein regu 99.3 8.1E-09 1.8E-13 104.0 29.2 248 149-424 278-537 (553)
41 KOG2076 RNA polymerase III tra 99.2 2.2E-08 4.8E-13 99.3 30.2 291 108-420 151-510 (895)
42 COG3071 HemY Uncharacterized e 99.2 1.1E-07 2.3E-12 86.4 32.0 288 108-420 96-388 (400)
43 PRK12370 invasion protein regu 99.2 7.9E-09 1.7E-13 104.0 27.1 214 183-421 275-501 (553)
44 KOG1155 Anaphase-promoting com 99.2 4.6E-08 1E-12 90.2 28.6 284 111-421 242-535 (559)
45 COG2956 Predicted N-acetylgluc 99.2 1.9E-08 4.2E-13 88.6 24.5 265 101-387 74-347 (389)
46 KOG1840 Kinesin light chain [C 99.2 1.3E-08 2.9E-13 98.3 24.9 242 132-385 199-477 (508)
47 KOG1840 Kinesin light chain [C 99.2 1.4E-08 3.1E-13 98.1 24.6 254 162-420 192-477 (508)
48 KOG1155 Anaphase-promoting com 99.1 3E-07 6.5E-12 85.0 29.9 318 127-450 159-524 (559)
49 KOG2003 TPR repeat-containing 99.1 6E-08 1.3E-12 89.1 24.7 290 106-420 429-720 (840)
50 PF12569 NARP1: NMDA receptor- 99.1 2.4E-07 5.1E-12 90.8 30.1 288 106-420 14-332 (517)
51 KOG1126 DNA-binding cell divis 99.1 2.1E-08 4.6E-13 96.5 21.9 264 103-392 360-625 (638)
52 KOG2076 RNA polymerase III tra 99.1 2.9E-07 6.3E-12 91.6 29.4 321 99-427 176-560 (895)
53 KOG4318 Bicoid mRNA stability 99.0 1.4E-08 3E-13 100.4 17.1 242 153-427 11-270 (1088)
54 PF12569 NARP1: NMDA receptor- 99.0 5.6E-07 1.2E-11 88.2 27.1 259 139-423 11-292 (517)
55 COG3071 HemY Uncharacterized e 99.0 2.8E-06 6.1E-11 77.4 29.3 256 105-387 127-390 (400)
56 PRK11189 lipoprotein NlpI; Pro 98.9 2E-06 4.3E-11 79.5 27.0 226 111-363 41-275 (296)
57 PRK11189 lipoprotein NlpI; Pro 98.9 2.7E-06 5.8E-11 78.6 27.3 224 143-388 37-266 (296)
58 KOG1129 TPR repeat-containing 98.9 1.8E-07 3.8E-12 82.8 17.7 227 173-420 227-456 (478)
59 KOG1915 Cell cycle control pro 98.9 1.3E-05 2.8E-10 74.6 30.3 117 301-421 418-535 (677)
60 KOG2003 TPR repeat-containing 98.9 4E-06 8.7E-11 77.4 26.3 309 102-421 243-688 (840)
61 PF12854 PPR_1: PPR repeat 98.9 3.6E-09 7.7E-14 62.2 4.4 34 198-231 1-34 (34)
62 PF12854 PPR_1: PPR repeat 98.8 4.9E-09 1.1E-13 61.7 4.0 32 282-313 2-33 (34)
63 KOG1129 TPR repeat-containing 98.8 1.2E-06 2.5E-11 77.7 18.9 229 136-387 227-458 (478)
64 KOG2002 TPR-containing nuclear 98.8 3.1E-06 6.8E-11 85.1 24.3 286 106-399 462-757 (1018)
65 KOG1173 Anaphase-promoting com 98.8 1.5E-05 3.3E-10 75.8 27.1 271 109-406 257-535 (611)
66 COG3063 PilF Tfp pilus assembl 98.8 1.2E-05 2.7E-10 68.1 23.8 209 134-363 37-245 (250)
67 cd05804 StaR_like StaR_like; a 98.8 2.2E-05 4.8E-10 74.9 29.5 266 139-423 50-337 (355)
68 KOG0495 HAT repeat protein [RN 98.8 0.00018 3.8E-09 69.9 34.1 289 127-426 474-790 (913)
69 KOG2002 TPR-containing nuclear 98.7 9.3E-06 2E-10 81.8 26.0 188 218-422 544-745 (1018)
70 KOG0547 Translocase of outer m 98.7 1.9E-05 4.1E-10 73.9 26.2 149 267-420 409-564 (606)
71 KOG0495 HAT repeat protein [RN 98.7 0.00013 2.9E-09 70.7 32.3 284 112-420 566-878 (913)
72 COG3063 PilF Tfp pilus assembl 98.7 1.5E-05 3.3E-10 67.6 23.1 183 210-410 41-224 (250)
73 PF04733 Coatomer_E: Coatomer 98.7 3E-06 6.4E-11 77.5 19.3 247 144-421 13-264 (290)
74 KOG0547 Translocase of outer m 98.7 1.4E-05 3E-10 74.8 23.3 223 142-386 336-565 (606)
75 cd05804 StaR_like StaR_like; a 98.6 0.00014 2.9E-09 69.4 30.5 271 133-421 7-292 (355)
76 KOG1070 rRNA processing protei 98.6 4.3E-05 9.3E-10 79.8 26.3 227 168-415 1457-1693(1710)
77 PF04733 Coatomer_E: Coatomer 98.5 8E-06 1.7E-10 74.6 17.3 224 133-387 36-265 (290)
78 KOG1173 Anaphase-promoting com 98.5 0.0002 4.4E-09 68.4 26.5 266 131-421 243-517 (611)
79 KOG1174 Anaphase-promoting com 98.4 0.00047 1E-08 63.5 25.7 269 127-420 227-498 (564)
80 PRK04841 transcriptional regul 98.4 0.0007 1.5E-08 73.2 31.0 302 109-421 422-759 (903)
81 KOG1174 Anaphase-promoting com 98.4 0.00073 1.6E-08 62.3 25.8 259 102-387 238-500 (564)
82 TIGR03302 OM_YfiO outer membra 98.4 6.3E-05 1.4E-09 67.1 19.4 188 131-351 32-232 (235)
83 KOG1156 N-terminal acetyltrans 98.4 0.0024 5.2E-08 62.3 30.4 302 109-423 54-469 (700)
84 TIGR03302 OM_YfiO outer membra 98.3 0.00016 3.4E-09 64.6 21.2 195 167-387 31-232 (235)
85 PLN02789 farnesyltranstransfer 98.3 0.00099 2.1E-08 61.9 26.7 206 143-371 48-268 (320)
86 KOG1125 TPR repeat-containing 98.3 0.00025 5.4E-09 68.0 22.4 258 141-416 294-565 (579)
87 TIGR00756 PPR pentatricopeptid 98.3 1.6E-06 3.6E-11 51.4 4.5 33 289-321 2-34 (35)
88 TIGR00756 PPR pentatricopeptid 98.3 2.1E-06 4.4E-11 51.0 4.7 34 359-392 1-34 (35)
89 KOG4340 Uncharacterized conser 98.2 0.00086 1.9E-08 59.2 21.9 263 135-417 13-334 (459)
90 PF13812 PPR_3: Pentatricopept 98.2 2.4E-06 5.2E-11 50.4 4.2 33 288-320 2-34 (34)
91 KOG1156 N-terminal acetyltrans 98.2 0.0074 1.6E-07 59.0 30.2 122 290-417 374-506 (700)
92 KOG1070 rRNA processing protei 98.2 0.0021 4.6E-08 67.8 27.3 242 113-376 1442-1689(1710)
93 PRK04841 transcriptional regul 98.2 0.0018 3.9E-08 70.0 28.7 274 138-422 415-720 (903)
94 PRK14720 transcript cleavage f 98.2 0.00042 9.1E-09 71.8 22.2 221 131-404 30-268 (906)
95 PF13812 PPR_3: Pentatricopept 98.2 3.2E-06 6.9E-11 49.9 4.3 33 359-391 2-34 (34)
96 COG4783 Putative Zn-dependent 98.2 0.0037 8E-08 59.2 26.1 112 267-383 321-433 (484)
97 PLN02789 farnesyltranstransfer 98.2 0.0028 6.2E-08 58.8 25.6 216 173-407 41-269 (320)
98 KOG1128 Uncharacterized conser 98.2 0.00044 9.4E-09 68.2 20.4 233 134-404 400-634 (777)
99 PF10037 MRP-S27: Mitochondria 98.1 3.1E-05 6.8E-10 73.6 12.0 126 127-254 61-186 (429)
100 PRK10370 formate-dependent nit 98.1 0.00072 1.6E-08 58.3 19.4 120 217-352 52-174 (198)
101 KOG1128 Uncharacterized conser 98.1 0.0013 2.9E-08 64.9 22.9 215 173-422 402-616 (777)
102 KOG3081 Vesicle coat complex C 98.1 0.0026 5.7E-08 55.4 22.0 100 267-372 152-255 (299)
103 COG5010 TadD Flp pilus assembl 98.1 0.00053 1.1E-08 59.6 17.5 158 136-312 70-227 (257)
104 PF10037 MRP-S27: Mitochondria 98.1 6.1E-05 1.3E-09 71.6 12.9 125 281-406 60-186 (429)
105 KOG2047 mRNA splicing factor [ 98.1 0.0086 1.9E-07 58.6 27.1 298 100-415 391-716 (835)
106 KOG1915 Cell cycle control pro 98.1 0.011 2.4E-07 55.7 29.9 207 167-387 320-536 (677)
107 KOG3081 Vesicle coat complex C 98.0 0.00092 2E-08 58.2 18.1 154 177-350 116-270 (299)
108 PF08579 RPM2: Mitochondrial r 98.0 0.00019 4E-09 54.0 11.9 88 208-299 29-116 (120)
109 PRK15359 type III secretion sy 98.0 0.00036 7.8E-09 56.9 15.1 97 134-234 26-122 (144)
110 COG5010 TadD Flp pilus assembl 98.0 0.002 4.3E-08 56.1 19.9 160 208-385 70-229 (257)
111 PRK10370 formate-dependent nit 98.0 0.00046 1E-08 59.5 16.1 129 109-246 52-183 (198)
112 KOG2047 mRNA splicing factor [ 98.0 0.018 4E-07 56.4 27.8 384 16-422 46-506 (835)
113 KOG3785 Uncharacterized conser 98.0 0.0042 9.2E-08 56.3 21.8 299 106-418 67-453 (557)
114 PRK15179 Vi polysaccharide bio 98.0 0.0061 1.3E-07 62.6 26.1 144 168-329 85-229 (694)
115 KOG2053 Mitochondrial inherita 98.0 0.012 2.7E-07 59.7 27.0 101 145-255 22-124 (932)
116 PRK15359 type III secretion sy 98.0 0.00076 1.6E-08 55.0 16.0 112 273-393 14-125 (144)
117 KOG1125 TPR repeat-containing 98.0 0.00051 1.1E-08 66.0 16.8 221 179-420 295-525 (579)
118 KOG3785 Uncharacterized conser 98.0 0.0067 1.4E-07 55.1 22.8 286 112-419 167-487 (557)
119 PF08579 RPM2: Mitochondrial r 98.0 0.00012 2.6E-09 54.9 9.8 79 173-253 29-116 (120)
120 PF01535 PPR: PPR repeat; Int 97.9 1.3E-05 2.9E-10 46.0 3.5 29 289-317 2-30 (31)
121 PF01535 PPR: PPR repeat; Int 97.9 1.5E-05 3.2E-10 45.8 3.6 29 360-388 2-30 (31)
122 PF09976 TPR_21: Tetratricopep 97.9 0.00091 2E-08 54.6 15.4 128 134-277 14-143 (145)
123 PRK15179 Vi polysaccharide bio 97.9 0.0027 5.9E-08 65.1 21.7 184 127-335 81-268 (694)
124 KOG4162 Predicted calmodulin-b 97.9 0.013 2.7E-07 58.6 24.7 220 127-351 318-542 (799)
125 TIGR02552 LcrH_SycD type III s 97.9 0.0011 2.3E-08 53.4 15.2 108 287-399 17-124 (135)
126 TIGR02552 LcrH_SycD type III s 97.9 0.00085 1.8E-08 54.0 14.4 109 131-247 16-124 (135)
127 PF06239 ECSIT: Evolutionarily 97.9 0.00049 1.1E-08 58.3 13.0 105 239-349 45-166 (228)
128 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0018 3.9E-08 61.5 18.0 125 206-350 171-296 (395)
129 KOG2376 Signal recognition par 97.8 0.041 8.9E-07 53.5 29.6 115 106-235 22-141 (652)
130 KOG0624 dsRNA-activated protei 97.8 0.017 3.7E-07 52.3 22.1 254 112-387 88-370 (504)
131 KOG3060 Uncharacterized conser 97.8 0.02 4.3E-07 49.8 22.8 186 183-387 26-220 (289)
132 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0012 2.5E-08 51.7 13.6 102 133-234 3-106 (119)
133 COG4783 Putative Zn-dependent 97.8 0.019 4.1E-07 54.5 23.2 136 215-386 317-453 (484)
134 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0014 3.1E-08 62.1 16.1 123 289-419 171-294 (395)
135 PF06239 ECSIT: Evolutionarily 97.8 0.00031 6.8E-09 59.5 10.3 87 168-256 46-153 (228)
136 KOG2053 Mitochondrial inherita 97.7 0.073 1.6E-06 54.3 30.3 229 110-352 23-256 (932)
137 KOG3617 WD40 and TPR repeat-co 97.7 0.01 2.2E-07 59.7 21.2 242 104-384 736-993 (1416)
138 KOG4340 Uncharacterized conser 97.7 0.005 1.1E-07 54.5 16.5 232 143-383 123-371 (459)
139 KOG4162 Predicted calmodulin-b 97.7 0.083 1.8E-06 53.0 29.5 299 106-425 333-752 (799)
140 PRK14720 transcript cleavage f 97.7 0.013 2.9E-07 61.1 22.2 211 105-369 40-268 (906)
141 PF09976 TPR_21: Tetratricopep 97.6 0.0011 2.4E-08 54.1 11.8 120 109-230 24-144 (145)
142 KOG2376 Signal recognition par 97.6 0.088 1.9E-06 51.3 28.6 286 109-407 92-506 (652)
143 KOG0985 Vesicle coat protein c 97.6 0.11 2.3E-06 53.9 26.1 215 131-381 983-1217(1666)
144 KOG0985 Vesicle coat protein c 97.6 0.03 6.6E-07 57.7 22.3 179 112-344 1064-1242(1666)
145 KOG3617 WD40 and TPR repeat-co 97.6 0.082 1.8E-06 53.5 24.9 142 112-279 816-994 (1416)
146 KOG3616 Selective LIM binding 97.5 0.0092 2E-07 59.2 17.6 138 138-312 738-875 (1636)
147 KOG3616 Selective LIM binding 97.5 0.008 1.7E-07 59.6 17.2 168 211-417 739-906 (1636)
148 cd00189 TPR Tetratricopeptide 97.5 0.0028 6.1E-08 46.4 11.5 94 290-386 3-96 (100)
149 PRK02603 photosystem I assembl 97.5 0.0072 1.6E-07 50.9 14.9 118 131-255 34-165 (172)
150 PF05843 Suf: Suppressor of fo 97.5 0.0042 9.1E-08 56.8 14.3 131 205-351 2-136 (280)
151 KOG0548 Molecular co-chaperone 97.4 0.12 2.7E-06 49.7 25.3 89 104-197 10-98 (539)
152 cd00189 TPR Tetratricopeptide 97.4 0.003 6.5E-08 46.3 11.0 95 135-233 3-97 (100)
153 PRK10866 outer membrane biogen 97.4 0.08 1.7E-06 47.3 20.9 58 175-234 38-99 (243)
154 KOG1914 mRNA cleavage and poly 97.4 0.028 6.2E-07 54.0 18.3 150 268-420 347-499 (656)
155 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.011 2.3E-07 46.1 13.4 100 171-281 4-105 (119)
156 KOG1914 mRNA cleavage and poly 97.3 0.14 3.1E-06 49.4 22.3 175 185-374 347-526 (656)
157 KOG0548 Molecular co-chaperone 97.3 0.13 2.8E-06 49.6 22.1 220 172-405 227-471 (539)
158 CHL00033 ycf3 photosystem I as 97.2 0.02 4.3E-07 48.0 14.9 105 169-280 35-148 (168)
159 PF05843 Suf: Suppressor of fo 97.2 0.015 3.3E-07 53.2 14.4 147 242-403 2-150 (280)
160 CHL00033 ycf3 photosystem I as 97.2 0.012 2.5E-07 49.4 12.8 96 287-384 35-139 (168)
161 PLN03088 SGT1, suppressor of 97.1 0.014 3.1E-07 55.3 14.5 90 295-387 10-99 (356)
162 KOG0624 dsRNA-activated protei 97.1 0.2 4.3E-06 45.7 26.1 285 109-420 51-368 (504)
163 PLN03088 SGT1, suppressor of 97.1 0.016 3.5E-07 55.0 14.5 91 140-234 10-100 (356)
164 PF12895 Apc3: Anaphase-promot 97.1 0.0013 2.8E-08 48.0 5.6 79 301-382 3-82 (84)
165 KOG3060 Uncharacterized conser 97.1 0.17 3.7E-06 44.2 23.2 185 112-316 28-220 (289)
166 PF14938 SNAP: Soluble NSF att 97.1 0.11 2.3E-06 47.7 19.4 65 288-352 156-226 (282)
167 PRK02603 photosystem I assembl 97.0 0.05 1.1E-06 45.8 15.5 85 287-373 35-121 (172)
168 PF12895 Apc3: Anaphase-promot 97.0 0.0018 3.8E-08 47.3 5.7 48 146-194 3-50 (84)
169 PF04840 Vps16_C: Vps16, C-ter 97.0 0.29 6.2E-06 45.5 22.7 113 287-420 177-289 (319)
170 PRK10153 DNA-binding transcrip 97.0 0.12 2.6E-06 51.6 19.7 146 199-352 332-483 (517)
171 PF12921 ATP13: Mitochondrial 96.9 0.031 6.7E-07 44.0 12.3 104 286-410 1-105 (126)
172 PF12688 TPR_5: Tetratrico pep 96.8 0.053 1.2E-06 42.3 12.6 58 140-197 9-66 (120)
173 PF14559 TPR_19: Tetratricopep 96.8 0.006 1.3E-07 42.2 6.7 51 182-233 4-54 (68)
174 PRK10866 outer membrane biogen 96.8 0.34 7.4E-06 43.2 19.3 175 210-418 38-237 (243)
175 PF12688 TPR_5: Tetratrico pep 96.7 0.091 2E-06 41.0 13.3 104 294-404 8-117 (120)
176 PF13525 YfiO: Outer membrane 96.7 0.19 4E-06 43.6 16.9 58 140-197 13-70 (203)
177 PF14559 TPR_19: Tetratricopep 96.7 0.0075 1.6E-07 41.7 6.6 64 143-211 2-65 (68)
178 PRK15363 pathogenicity island 96.7 0.041 8.8E-07 44.7 11.4 99 132-234 35-133 (157)
179 KOG1538 Uncharacterized conser 96.7 0.094 2E-06 51.6 15.6 259 130-424 554-848 (1081)
180 PRK15363 pathogenicity island 96.7 0.14 3E-06 41.7 14.3 96 170-280 36-131 (157)
181 PRK10803 tol-pal system protei 96.6 0.055 1.2E-06 48.8 13.1 103 132-234 143-247 (263)
182 PF03704 BTAD: Bacterial trans 96.6 0.026 5.7E-07 46.0 10.3 72 324-397 64-140 (146)
183 PRK10153 DNA-binding transcrip 96.6 0.13 2.8E-06 51.3 16.7 145 127-291 332-490 (517)
184 COG3898 Uncharacterized membra 96.6 0.63 1.4E-05 43.4 27.3 297 109-430 97-400 (531)
185 PF14938 SNAP: Soluble NSF att 96.6 0.59 1.3E-05 42.9 20.1 135 294-430 121-271 (282)
186 PF13525 YfiO: Outer membrane 96.6 0.28 6E-06 42.5 16.8 62 172-233 8-71 (203)
187 PF13432 TPR_16: Tetratricopep 96.4 0.016 3.4E-07 39.7 6.6 55 140-197 5-59 (65)
188 PF13432 TPR_16: Tetratricopep 96.4 0.016 3.5E-07 39.6 6.6 59 175-234 3-61 (65)
189 PF12921 ATP13: Mitochondrial 96.4 0.062 1.3E-06 42.3 10.5 57 315-371 45-101 (126)
190 PF03704 BTAD: Bacterial trans 96.4 0.22 4.7E-06 40.5 14.3 72 205-290 63-139 (146)
191 PF13170 DUF4003: Protein of u 96.4 0.82 1.8E-05 42.0 22.0 151 267-420 77-244 (297)
192 KOG1127 TPR repeat-containing 96.2 0.18 3.8E-06 52.4 14.9 181 112-315 474-658 (1238)
193 KOG2280 Vacuolar assembly/sort 96.2 1.7 3.7E-05 44.0 21.6 263 133-420 508-797 (829)
194 PF13414 TPR_11: TPR repeat; P 96.2 0.034 7.5E-07 38.5 7.3 62 322-385 3-65 (69)
195 KOG1127 TPR repeat-containing 96.1 0.7 1.5E-05 48.2 18.6 179 185-385 474-657 (1238)
196 PF13414 TPR_11: TPR repeat; P 96.1 0.034 7.3E-07 38.5 7.0 62 133-197 4-66 (69)
197 PF04840 Vps16_C: Vps16, C-ter 96.1 1.2 2.6E-05 41.4 19.7 110 243-384 179-288 (319)
198 PRK10803 tol-pal system protei 96.0 0.16 3.5E-06 45.8 12.6 99 287-387 143-246 (263)
199 KOG0553 TPR repeat-containing 95.9 0.14 3E-06 45.9 11.4 91 266-362 95-186 (304)
200 KOG1585 Protein required for f 95.9 0.61 1.3E-05 40.6 14.7 208 132-381 31-250 (308)
201 KOG1130 Predicted G-alpha GTPa 95.9 0.24 5.3E-06 46.3 13.0 290 131-421 14-343 (639)
202 KOG2796 Uncharacterized conser 95.8 0.26 5.7E-06 43.3 12.2 61 172-232 180-240 (366)
203 KOG3941 Intermediate in Toll s 95.8 0.071 1.5E-06 47.2 8.9 89 284-373 64-173 (406)
204 KOG2796 Uncharacterized conser 95.8 0.36 7.8E-06 42.5 12.9 140 243-397 179-323 (366)
205 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.24 5.3E-06 47.4 13.0 70 129-198 72-141 (453)
206 PF13371 TPR_9: Tetratricopept 95.7 0.095 2.1E-06 36.6 8.1 56 330-387 3-58 (73)
207 PF13424 TPR_12: Tetratricopep 95.7 0.038 8.2E-07 39.4 6.1 64 133-196 6-73 (78)
208 KOG3941 Intermediate in Toll s 95.7 0.14 3.1E-06 45.3 10.4 34 221-256 140-173 (406)
209 COG4700 Uncharacterized protei 95.7 1 2.2E-05 37.6 19.0 137 283-421 85-221 (251)
210 COG4235 Cytochrome c biogenesi 95.6 0.93 2E-05 40.8 15.2 102 203-316 155-256 (287)
211 PF13371 TPR_9: Tetratricopept 95.5 0.1 2.2E-06 36.5 7.5 55 178-233 4-58 (73)
212 KOG0553 TPR repeat-containing 95.5 0.23 5E-06 44.5 11.0 93 109-208 94-186 (304)
213 KOG2041 WD40 repeat protein [G 95.4 1.7 3.7E-05 43.6 17.5 90 283-386 848-951 (1189)
214 PF13424 TPR_12: Tetratricopep 95.4 0.067 1.4E-06 38.1 6.3 61 324-384 7-72 (78)
215 PF13170 DUF4003: Protein of u 95.3 2.3 4.9E-05 39.2 22.6 157 185-350 78-249 (297)
216 COG4700 Uncharacterized protei 95.3 1.4 3.1E-05 36.8 18.3 127 239-381 87-216 (251)
217 COG5107 RNA14 Pre-mRNA 3'-end 95.2 1.1 2.3E-05 42.8 14.7 48 205-253 398-445 (660)
218 PF13281 DUF4071: Domain of un 95.1 3 6.5E-05 39.4 22.2 177 132-316 141-334 (374)
219 KOG1538 Uncharacterized conser 95.0 2.8 6.1E-05 41.8 17.4 226 136-390 602-849 (1081)
220 COG1729 Uncharacterized protei 94.8 0.87 1.9E-05 40.5 12.7 100 134-234 144-245 (262)
221 COG5107 RNA14 Pre-mRNA 3'-end 94.8 1.2 2.7E-05 42.3 14.0 150 240-408 396-550 (660)
222 PF13281 DUF4071: Domain of un 94.6 4.1 9E-05 38.5 20.5 102 150-253 121-229 (374)
223 COG4235 Cytochrome c biogenesi 94.6 3.1 6.8E-05 37.6 15.7 99 168-281 155-256 (287)
224 KOG1130 Predicted G-alpha GTPa 94.6 0.77 1.7E-05 43.1 12.0 271 107-385 28-342 (639)
225 PF04184 ST7: ST7 protein; In 94.5 3.2 6.8E-05 40.3 16.4 76 293-368 265-341 (539)
226 PF10300 DUF3808: Protein of u 94.5 2.5 5.4E-05 41.9 16.6 167 206-385 190-374 (468)
227 PLN03098 LPA1 LOW PSII ACCUMUL 94.4 0.85 1.9E-05 43.8 12.5 64 286-351 74-141 (453)
228 PF09205 DUF1955: Domain of un 94.3 2 4.4E-05 33.7 13.6 68 203-284 85-152 (161)
229 PF13512 TPR_18: Tetratricopep 94.3 1.4 2.9E-05 35.3 11.4 78 139-216 17-94 (142)
230 COG3629 DnrI DNA-binding trans 94.2 0.64 1.4E-05 41.9 10.6 81 322-404 153-238 (280)
231 smart00299 CLH Clathrin heavy 93.8 2.9 6.3E-05 33.5 15.8 126 245-405 11-137 (140)
232 PF09205 DUF1955: Domain of un 93.7 2.7 5.9E-05 33.0 14.6 143 265-430 15-157 (161)
233 KOG4555 TPR repeat-containing 93.7 2.3 5E-05 33.3 11.2 53 297-350 53-105 (175)
234 PF08631 SPO22: Meiosis protei 93.6 5.6 0.00012 36.3 24.6 15 368-382 256-270 (278)
235 COG1729 Uncharacterized protei 93.6 1.2 2.7E-05 39.6 11.1 98 289-387 144-244 (262)
236 PF10300 DUF3808: Protein of u 93.4 4.4 9.5E-05 40.1 15.9 150 267-419 203-373 (468)
237 COG3629 DnrI DNA-binding trans 93.3 0.98 2.1E-05 40.8 10.1 77 171-250 155-236 (280)
238 PF04053 Coatomer_WDAD: Coatom 93.3 1.8 3.9E-05 42.3 12.7 156 144-348 273-428 (443)
239 KOG2610 Uncharacterized conser 93.2 6.8 0.00015 36.1 16.0 118 182-312 116-234 (491)
240 PF04053 Coatomer_WDAD: Coatom 93.1 3.1 6.7E-05 40.7 14.2 156 177-382 269-426 (443)
241 KOG0543 FKBP-type peptidyl-pro 93.0 2.5 5.4E-05 39.8 12.5 95 288-385 258-353 (397)
242 PF10602 RPN7: 26S proteasome 92.9 3 6.4E-05 35.2 12.1 100 132-231 36-140 (177)
243 KOG4570 Uncharacterized conser 92.3 0.72 1.6E-05 41.7 7.7 104 127-234 59-165 (418)
244 smart00299 CLH Clathrin heavy 92.2 5.1 0.00011 32.1 15.8 44 173-217 11-54 (140)
245 PRK11906 transcriptional regul 92.0 12 0.00027 36.2 16.1 150 111-279 273-434 (458)
246 KOG0550 Molecular chaperone (D 91.9 12 0.00026 35.6 16.6 82 267-352 264-351 (486)
247 KOG1920 IkappaB kinase complex 91.8 22 0.00048 38.5 18.7 76 299-385 951-1026(1265)
248 PF07035 Mic1: Colon cancer-as 91.8 6.7 0.00014 32.5 15.3 138 271-423 13-150 (167)
249 PRK11906 transcriptional regul 91.6 12 0.00026 36.3 15.5 172 205-383 252-432 (458)
250 PRK15331 chaperone protein Sic 91.5 6.9 0.00015 32.2 15.7 89 295-386 45-133 (165)
251 PF04184 ST7: ST7 protein; In 91.5 15 0.00032 36.0 17.4 76 245-331 263-340 (539)
252 KOG2114 Vacuolar assembly/sort 91.4 6.8 0.00015 40.5 14.2 213 134-384 285-516 (933)
253 KOG4570 Uncharacterized conser 91.4 0.84 1.8E-05 41.3 7.2 97 169-280 64-163 (418)
254 PF13762 MNE1: Mitochondrial s 91.1 6.9 0.00015 31.5 12.9 88 325-412 42-134 (145)
255 PF10602 RPN7: 26S proteasome 90.9 2.9 6.4E-05 35.2 9.9 50 206-255 38-87 (177)
256 PRK15331 chaperone protein Sic 90.8 3.3 7.2E-05 34.0 9.6 92 138-233 43-134 (165)
257 KOG2114 Vacuolar assembly/sort 90.0 9.6 0.00021 39.5 13.8 168 132-314 334-517 (933)
258 COG4105 ComL DNA uptake lipopr 90.0 13 0.00029 32.9 20.3 57 293-350 173-232 (254)
259 KOG1550 Extracellular protein 89.9 22 0.00049 36.1 16.9 185 220-425 228-429 (552)
260 PF13512 TPR_18: Tetratricopep 89.9 8.5 0.00018 30.9 10.9 75 297-372 20-96 (142)
261 KOG0550 Molecular chaperone (D 89.6 19 0.00042 34.2 18.5 189 202-410 166-374 (486)
262 PF08631 SPO22: Meiosis protei 89.6 16 0.00035 33.3 25.5 229 108-349 5-273 (278)
263 KOG4555 TPR repeat-containing 89.5 8.5 0.00019 30.3 10.2 90 108-199 55-145 (175)
264 PF07079 DUF1347: Protein of u 89.4 21 0.00046 34.4 22.3 260 142-420 16-325 (549)
265 KOG0543 FKBP-type peptidyl-pro 89.2 6.5 0.00014 37.1 11.3 100 295-398 216-329 (397)
266 PF13428 TPR_14: Tetratricopep 88.9 1.7 3.6E-05 26.8 5.2 24 327-350 6-29 (44)
267 PF13428 TPR_14: Tetratricopep 88.8 1.6 3.6E-05 26.8 5.1 28 135-162 4-31 (44)
268 KOG2280 Vacuolar assembly/sort 88.6 32 0.00069 35.4 20.3 284 111-418 452-769 (829)
269 PF13176 TPR_7: Tetratricopept 88.3 1.1 2.4E-05 26.2 4.0 23 172-194 2-24 (36)
270 PF13176 TPR_7: Tetratricopept 88.3 1.2 2.6E-05 26.0 4.1 26 360-385 1-26 (36)
271 PF09613 HrpB1_HrpK: Bacterial 87.2 15 0.00033 30.1 10.9 61 288-352 8-74 (160)
272 KOG1920 IkappaB kinase complex 87.1 48 0.001 36.1 17.0 109 293-420 914-1026(1265)
273 cd00923 Cyt_c_Oxidase_Va Cytoc 87.1 5.4 0.00012 29.4 7.4 63 184-249 22-84 (103)
274 COG1747 Uncharacterized N-term 86.5 35 0.00076 33.6 16.7 173 239-429 64-241 (711)
275 COG3118 Thioredoxin domain-con 86.4 26 0.00056 31.9 16.7 50 180-230 145-194 (304)
276 PF02284 COX5A: Cytochrome c o 85.9 4.6 9.9E-05 30.1 6.6 63 185-250 26-88 (108)
277 cd00923 Cyt_c_Oxidase_Va Cytoc 85.8 7.7 0.00017 28.6 7.6 41 309-349 29-69 (103)
278 COG3118 Thioredoxin domain-con 85.5 28 0.00061 31.6 15.9 149 138-304 140-289 (304)
279 KOG2610 Uncharacterized conser 85.2 32 0.00069 31.9 14.5 155 215-385 114-274 (491)
280 COG4105 ComL DNA uptake lipopr 84.8 28 0.0006 31.0 22.5 188 177-386 42-232 (254)
281 COG4649 Uncharacterized protei 84.7 22 0.00047 29.6 14.2 136 203-351 58-196 (221)
282 PF07035 Mic1: Colon cancer-as 84.6 22 0.00047 29.5 15.1 130 190-346 15-144 (167)
283 PF13374 TPR_10: Tetratricopep 83.7 2.8 6E-05 25.0 4.2 25 171-195 4-28 (42)
284 KOG2041 WD40 repeat protein [G 83.2 59 0.0013 33.4 20.1 287 109-416 747-1080(1189)
285 PF11207 DUF2989: Protein of u 83.0 13 0.00028 31.8 9.0 78 143-224 118-198 (203)
286 PF13374 TPR_10: Tetratricopep 81.9 3.6 7.8E-05 24.5 4.2 27 359-385 3-29 (42)
287 PF02284 COX5A: Cytochrome c o 81.6 20 0.00043 26.9 10.0 59 305-365 28-86 (108)
288 PF13929 mRNA_stabil: mRNA sta 81.5 42 0.0009 30.5 18.1 139 267-405 143-290 (292)
289 KOG1550 Extracellular protein 81.3 67 0.0014 32.7 21.5 187 111-318 227-428 (552)
290 KOG1941 Acetylcholine receptor 80.6 51 0.0011 31.0 15.9 65 367-431 215-286 (518)
291 PF00515 TPR_1: Tetratricopept 80.3 4.6 0.0001 22.9 4.1 26 172-197 4-29 (34)
292 COG4455 ImpE Protein of avirul 80.1 14 0.0003 32.0 8.2 78 289-367 3-81 (273)
293 PF09613 HrpB1_HrpK: Bacterial 80.1 32 0.00069 28.3 13.2 89 141-234 19-107 (160)
294 COG1747 Uncharacterized N-term 79.7 67 0.0014 31.8 21.2 179 168-368 65-249 (711)
295 COG4455 ImpE Protein of avirul 79.2 19 0.0004 31.3 8.6 77 324-402 3-81 (273)
296 PF13762 MNE1: Mitochondrial s 78.8 33 0.00071 27.7 11.1 95 127-221 32-132 (145)
297 PF10579 Rapsyn_N: Rapsyn N-te 78.7 6.1 0.00013 27.9 4.8 48 144-191 18-65 (80)
298 PF11848 DUF3368: Domain of un 78.4 9.1 0.0002 24.2 5.2 36 367-402 11-46 (48)
299 PF11207 DUF2989: Protein of u 77.9 27 0.00058 29.9 9.3 22 356-377 176-197 (203)
300 KOG1941 Acetylcholine receptor 77.8 63 0.0014 30.4 15.9 117 267-383 137-271 (518)
301 PHA02875 ankyrin repeat protei 76.6 76 0.0016 30.7 15.7 50 175-228 38-89 (413)
302 PF13431 TPR_17: Tetratricopep 76.6 3.5 7.6E-05 23.8 2.7 21 357-377 12-32 (34)
303 PF00637 Clathrin: Region in C 76.3 1 2.2E-05 36.4 0.5 54 138-193 13-66 (143)
304 COG4649 Uncharacterized protei 76.2 45 0.00097 27.9 14.0 133 134-281 61-196 (221)
305 PF10579 Rapsyn_N: Rapsyn N-te 75.8 8.1 0.00018 27.3 4.7 47 334-380 18-65 (80)
306 TIGR02561 HrpB1_HrpK type III 75.4 42 0.00092 27.2 11.2 89 298-394 21-113 (153)
307 PF00515 TPR_1: Tetratricopept 75.2 7.2 0.00016 22.0 3.9 30 205-234 2-31 (34)
308 PF07719 TPR_2: Tetratricopept 74.6 8.3 0.00018 21.6 4.1 23 174-196 6-28 (34)
309 PF13431 TPR_17: Tetratricopep 74.2 4.6 9.9E-05 23.3 2.8 16 172-187 16-31 (34)
310 COG0457 NrfG FOG: TPR repeat [ 74.1 52 0.0011 27.6 29.7 224 146-386 37-264 (291)
311 PF00637 Clathrin: Region in C 73.9 1 2.2E-05 36.4 -0.1 54 293-346 13-66 (143)
312 PHA02875 ankyrin repeat protei 73.5 29 0.00062 33.7 10.0 47 177-227 7-55 (413)
313 KOG1585 Protein required for f 72.4 70 0.0015 28.4 17.4 168 146-345 72-250 (308)
314 TIGR02561 HrpB1_HrpK type III 72.4 51 0.0011 26.7 10.9 49 182-234 23-74 (153)
315 TIGR02508 type_III_yscG type I 72.0 39 0.00085 25.3 9.1 86 267-361 20-105 (115)
316 TIGR03504 FimV_Cterm FimV C-te 71.8 7.7 0.00017 24.0 3.5 20 366-385 7-26 (44)
317 PF13929 mRNA_stabil: mRNA sta 71.7 81 0.0017 28.8 18.2 116 184-312 143-263 (292)
318 PF07163 Pex26: Pex26 protein; 71.6 66 0.0014 29.1 10.4 88 247-345 89-181 (309)
319 COG3947 Response regulator con 71.5 82 0.0018 28.8 15.5 70 325-396 282-356 (361)
320 TIGR01503 MthylAspMut_E methyl 71.4 38 0.00081 32.9 9.5 164 109-292 27-216 (480)
321 COG0457 NrfG FOG: TPR repeat [ 70.6 63 0.0014 27.1 29.1 205 132-351 59-265 (291)
322 PF07163 Pex26: Pex26 protein; 69.7 79 0.0017 28.7 10.5 86 293-381 89-181 (309)
323 COG5159 RPN6 26S proteasome re 69.4 90 0.0019 28.4 15.5 159 175-343 9-186 (421)
324 PF06552 TOM20_plant: Plant sp 69.0 38 0.00082 28.5 7.9 29 220-252 96-124 (186)
325 PF07719 TPR_2: Tetratricopept 68.9 12 0.00026 20.8 3.9 30 205-234 2-31 (34)
326 KOG2063 Vacuolar assembly/sort 68.3 1.8E+02 0.0038 31.4 16.5 39 296-334 600-638 (877)
327 COG3898 Uncharacterized membra 67.9 1.2E+02 0.0025 29.1 26.1 249 109-387 133-392 (531)
328 cd08819 CARD_MDA5_2 Caspase ac 67.8 44 0.00096 24.2 7.2 65 341-412 21-85 (88)
329 KOG2659 LisH motif-containing 67.1 71 0.0015 27.9 9.5 102 126-229 20-128 (228)
330 TIGR03504 FimV_Cterm FimV C-te 67.0 13 0.00029 23.0 3.8 20 140-159 7-26 (44)
331 PF08311 Mad3_BUB1_I: Mad3/BUB 66.7 52 0.0011 25.9 8.2 44 150-194 81-124 (126)
332 PF07079 DUF1347: Protein of u 66.1 1.4E+02 0.003 29.3 27.7 102 112-217 61-180 (549)
333 PF13181 TPR_8: Tetratricopept 66.0 18 0.00038 20.3 4.2 27 171-197 3-29 (34)
334 TIGR02508 type_III_yscG type I 65.8 55 0.0012 24.5 7.4 52 330-388 47-98 (115)
335 KOG4077 Cytochrome c oxidase, 65.5 50 0.0011 25.9 7.3 47 187-233 67-113 (149)
336 PF07721 TPR_4: Tetratricopept 65.2 11 0.00023 20.0 2.9 17 365-381 8-24 (26)
337 KOG0276 Vesicle coat complex C 64.8 98 0.0021 31.3 10.9 94 267-382 652-745 (794)
338 KOG4279 Serine/threonine prote 63.9 1.2E+02 0.0025 31.7 11.5 200 113-352 180-396 (1226)
339 PF02259 FAT: FAT domain; Int 62.2 1.4E+02 0.003 28.0 19.2 66 285-350 144-212 (352)
340 PF11846 DUF3366: Domain of un 61.9 38 0.00081 28.9 7.2 32 355-386 141-172 (193)
341 PF08311 Mad3_BUB1_I: Mad3/BUB 61.6 77 0.0017 24.9 9.6 44 340-383 81-124 (126)
342 PF10475 DUF2450: Protein of u 61.0 79 0.0017 29.1 9.5 111 247-379 104-218 (291)
343 COG2976 Uncharacterized protei 60.6 1.1E+02 0.0023 26.2 14.2 128 133-282 55-189 (207)
344 PF11848 DUF3368: Domain of un 60.6 35 0.00075 21.5 5.0 31 181-211 14-44 (48)
345 KOG4648 Uncharacterized conser 60.1 39 0.00084 31.5 7.0 47 177-225 105-152 (536)
346 PF10345 Cohesin_load: Cohesin 60.0 2.2E+02 0.0047 29.5 21.7 199 130-349 28-252 (608)
347 PF13174 TPR_6: Tetratricopept 59.5 14 0.00031 20.3 2.9 20 213-232 9-28 (33)
348 KOG0276 Vesicle coat complex C 59.4 1.3E+02 0.0027 30.6 10.7 98 109-230 650-747 (794)
349 PF02259 FAT: FAT domain; Int 59.0 1.6E+02 0.0034 27.6 19.9 54 176-233 5-58 (352)
350 KOG4077 Cytochrome c oxidase, 58.9 82 0.0018 24.8 7.5 42 309-350 71-112 (149)
351 KOG4279 Serine/threonine prote 58.8 1.2E+02 0.0026 31.6 10.6 88 151-241 182-280 (1226)
352 COG5108 RPO41 Mitochondrial DN 58.2 60 0.0013 33.1 8.4 47 292-338 33-81 (1117)
353 KOG1464 COP9 signalosome, subu 58.1 1.4E+02 0.0031 26.9 16.9 187 110-308 41-252 (440)
354 PF11663 Toxin_YhaV: Toxin wit 58.1 8 0.00017 30.5 2.1 33 369-403 106-138 (140)
355 KOG2063 Vacuolar assembly/sort 57.2 2.8E+02 0.0061 29.9 15.1 120 134-255 506-640 (877)
356 COG5187 RPN7 26S proteasome re 57.2 1.1E+02 0.0023 28.0 9.0 85 308-392 100-189 (412)
357 KOG4648 Uncharacterized conser 56.4 73 0.0016 29.8 8.0 55 295-351 105-160 (536)
358 PF14689 SPOB_a: Sensor_kinase 56.4 32 0.0007 23.1 4.6 23 363-385 28-50 (62)
359 PF11846 DUF3366: Domain of un 55.8 34 0.00073 29.2 5.9 35 127-161 139-173 (193)
360 KOG3807 Predicted membrane pro 55.4 1.3E+02 0.0028 28.0 9.5 55 296-352 284-341 (556)
361 smart00638 LPD_N Lipoprotein N 54.8 2.5E+02 0.0055 28.7 21.5 220 146-385 285-523 (574)
362 PHA03100 ankyrin repeat protei 54.5 1.5E+02 0.0033 29.3 11.2 14 379-392 297-310 (480)
363 KOG1258 mRNA processing protei 54.0 2.5E+02 0.0055 28.4 23.9 301 101-413 84-420 (577)
364 PF10366 Vps39_1: Vacuolar sor 53.9 96 0.0021 23.6 7.9 27 360-386 41-67 (108)
365 KOG1586 Protein required for f 53.9 1.6E+02 0.0035 26.1 10.9 187 187-398 3-194 (288)
366 PRK10564 maltose regulon perip 53.7 28 0.00062 31.8 5.1 36 318-353 252-288 (303)
367 cd08819 CARD_MDA5_2 Caspase ac 53.4 85 0.0018 22.8 7.2 38 299-341 48-85 (88)
368 PF10366 Vps39_1: Vacuolar sor 52.9 1E+02 0.0022 23.5 7.7 26 172-197 42-67 (108)
369 PF04097 Nic96: Nup93/Nic96; 52.3 1.2E+02 0.0026 31.4 10.1 91 177-281 266-356 (613)
370 PF06552 TOM20_plant: Plant sp 52.2 1.4E+02 0.0031 25.1 9.7 87 221-318 52-138 (186)
371 PF14689 SPOB_a: Sensor_kinase 51.6 42 0.00091 22.5 4.6 23 327-349 28-50 (62)
372 TIGR01228 hutU urocanate hydra 51.3 94 0.002 30.6 8.3 69 145-228 207-280 (545)
373 COG2178 Predicted RNA-binding 51.2 1.6E+02 0.0034 25.2 9.6 107 269-386 20-149 (204)
374 PRK14956 DNA polymerase III su 50.5 2.7E+02 0.0059 27.8 11.7 100 270-394 184-284 (484)
375 KOG4567 GTPase-activating prot 49.6 1.1E+02 0.0024 28.2 7.9 69 307-381 263-341 (370)
376 KOG4234 TPR repeat-containing 49.4 1.7E+02 0.0038 25.2 9.4 91 295-388 103-198 (271)
377 COG3947 Response regulator con 49.1 2.2E+02 0.0047 26.2 16.4 140 112-258 149-330 (361)
378 KOG2297 Predicted translation 48.9 2.2E+02 0.0048 26.3 13.6 17 289-305 323-339 (412)
379 smart00777 Mad3_BUB1_I Mad3/BU 48.8 1.3E+02 0.0028 23.6 8.9 75 112-193 49-123 (125)
380 KOG2422 Uncharacterized conser 48.3 3.1E+02 0.0067 27.8 17.9 166 109-275 251-449 (665)
381 KOG0687 26S proteasome regulat 48.3 2.3E+02 0.0051 26.4 13.4 138 127-280 65-209 (393)
382 KOG0686 COP9 signalosome, subu 48.3 2.6E+02 0.0057 27.0 16.2 96 133-230 151-255 (466)
383 COG2976 Uncharacterized protei 48.3 1.8E+02 0.0038 25.0 16.5 139 287-433 54-199 (207)
384 PRK14958 DNA polymerase III su 47.7 3.1E+02 0.0067 27.6 12.2 35 279-315 192-226 (509)
385 COG0735 Fur Fe2+/Zn2+ uptake r 47.7 79 0.0017 25.5 6.5 60 156-218 10-69 (145)
386 KOG1464 COP9 signalosome, subu 47.6 2.2E+02 0.0047 25.8 18.6 70 127-196 21-92 (440)
387 PF11817 Foie-gras_1: Foie gra 46.9 1.4E+02 0.003 26.7 8.5 54 174-227 183-241 (247)
388 PRK09687 putative lyase; Provi 46.7 2.3E+02 0.005 25.9 26.3 121 286-421 141-262 (280)
389 smart00028 TPR Tetratricopepti 46.1 40 0.00088 17.3 3.5 25 172-196 4-28 (34)
390 PF11817 Foie-gras_1: Foie gra 45.4 1.3E+02 0.0029 26.7 8.2 57 328-384 184-244 (247)
391 PF09454 Vps23_core: Vps23 cor 45.0 70 0.0015 21.8 4.8 49 284-333 5-53 (65)
392 PRK10564 maltose regulon perip 44.4 45 0.00098 30.5 4.9 28 208-235 261-288 (303)
393 PRK15180 Vi polysaccharide bio 43.8 3.3E+02 0.0072 26.9 12.3 121 215-352 300-421 (831)
394 PF11768 DUF3312: Protein of u 43.1 3.5E+02 0.0076 27.3 11.0 62 290-353 411-475 (545)
395 PF10345 Cohesin_load: Cohesin 43.0 4E+02 0.0087 27.6 27.4 284 110-399 74-453 (608)
396 PF12926 MOZART2: Mitotic-spin 42.9 1.3E+02 0.0028 21.8 7.9 44 308-351 29-72 (88)
397 PRK09857 putative transposase; 42.5 1.6E+02 0.0034 27.2 8.3 64 325-390 209-272 (292)
398 PF04097 Nic96: Nup93/Nic96; 42.5 4.1E+02 0.0089 27.6 15.1 90 293-387 264-356 (613)
399 smart00544 MA3 Domain in DAP-5 42.2 1.5E+02 0.0032 22.4 9.4 21 328-348 8-28 (113)
400 PF02847 MA3: MA3 domain; Int 42.0 66 0.0014 24.4 5.0 21 328-348 8-28 (113)
401 COG5108 RPO41 Mitochondrial DN 41.9 2.5E+02 0.0053 29.1 9.7 121 174-314 33-160 (1117)
402 PF09454 Vps23_core: Vps23 cor 40.9 55 0.0012 22.3 3.8 49 320-370 6-54 (65)
403 COG2178 Predicted RNA-binding 40.7 2.3E+02 0.005 24.2 10.0 99 243-351 31-150 (204)
404 PF07575 Nucleopor_Nup85: Nup8 40.5 82 0.0018 32.2 6.8 34 370-403 507-540 (566)
405 PF11663 Toxin_YhaV: Toxin wit 39.9 42 0.0009 26.6 3.4 31 145-179 108-138 (140)
406 cd07153 Fur_like Ferric uptake 39.9 66 0.0014 24.6 4.8 41 368-408 10-50 (116)
407 COG5159 RPN6 26S proteasome re 39.4 3E+02 0.0066 25.2 11.2 129 211-348 10-151 (421)
408 KOG2066 Vacuolar assembly/sort 37.8 5.2E+02 0.011 27.4 22.5 117 112-232 372-533 (846)
409 PF08314 Sec39: Secretory path 37.4 5.3E+02 0.011 27.4 12.6 188 229-438 418-650 (715)
410 PF09477 Type_III_YscG: Bacter 37.0 1.9E+02 0.0041 22.1 8.3 80 301-388 20-99 (116)
411 PF14853 Fis1_TPR_C: Fis1 C-te 36.5 1.2E+02 0.0026 19.6 5.3 27 366-394 9-35 (53)
412 PF12862 Apc5: Anaphase-promot 36.3 1.5E+02 0.0033 21.6 6.0 20 178-197 50-69 (94)
413 PRK08691 DNA polymerase III su 36.2 5.4E+02 0.012 27.1 11.7 81 269-352 181-275 (709)
414 KOG4234 TPR repeat-containing 35.9 2.9E+02 0.0063 23.9 9.3 87 179-281 105-197 (271)
415 PF09477 Type_III_YscG: Bacter 35.4 2E+02 0.0044 21.9 9.7 86 267-361 21-106 (116)
416 PRK15180 Vi polysaccharide bio 35.4 4.6E+02 0.0099 26.0 12.9 121 179-316 299-420 (831)
417 PF14669 Asp_Glu_race_2: Putat 34.8 2.9E+02 0.0064 23.6 14.8 58 325-382 135-205 (233)
418 PRK09857 putative transposase; 34.3 3E+02 0.0066 25.3 8.8 66 362-428 210-275 (292)
419 PRK06645 DNA polymerase III su 34.0 5.1E+02 0.011 26.1 11.2 17 218-234 271-287 (507)
420 COG5210 GTPase-activating prot 34.0 4.6E+02 0.0099 26.3 10.8 45 308-352 363-407 (496)
421 COG0735 Fur Fe2+/Zn2+ uptake r 33.3 2.2E+02 0.0047 23.0 6.9 43 309-352 8-50 (145)
422 PF01475 FUR: Ferric uptake re 33.2 69 0.0015 24.7 3.9 48 363-410 12-59 (120)
423 PRK09687 putative lyase; Provi 33.2 3.8E+02 0.0083 24.5 27.2 234 130-404 35-278 (280)
424 KOG0403 Neoplastic transformat 33.0 4.9E+02 0.011 25.6 18.4 77 325-407 512-588 (645)
425 PF03745 DUF309: Domain of unk 32.5 1.6E+02 0.0034 19.8 5.8 48 297-344 9-61 (62)
426 PF09670 Cas_Cas02710: CRISPR- 32.4 4.6E+02 0.01 25.2 12.1 49 267-316 146-198 (379)
427 KOG2297 Predicted translation 31.9 4.2E+02 0.0091 24.6 17.0 22 322-343 321-342 (412)
428 KOG4567 GTPase-activating prot 31.6 2.7E+02 0.0058 25.8 7.5 71 271-346 262-342 (370)
429 PF11838 ERAP1_C: ERAP1-like C 31.3 4.2E+02 0.0091 24.4 21.6 148 267-420 145-302 (324)
430 cd08326 CARD_CASP9 Caspase act 30.8 2.1E+02 0.0045 20.6 6.7 60 343-411 20-79 (84)
431 PF09868 DUF2095: Uncharacteri 30.6 2E+02 0.0043 22.1 5.5 25 328-352 67-91 (128)
432 PF02607 B12-binding_2: B12 bi 30.5 64 0.0014 22.5 3.1 38 370-407 13-50 (79)
433 PRK06645 DNA polymerase III su 30.4 5.8E+02 0.013 25.7 11.0 43 270-314 191-234 (507)
434 KOG2659 LisH motif-containing 30.4 3.8E+02 0.0082 23.6 9.9 100 282-384 21-129 (228)
435 COG0790 FOG: TPR repeat, SEL1 30.2 4.2E+02 0.0091 24.0 22.2 153 110-283 55-222 (292)
436 PRK14951 DNA polymerase III su 30.1 6.5E+02 0.014 26.2 11.2 35 279-315 197-231 (618)
437 COG1466 HolA DNA polymerase II 29.1 3.2E+02 0.007 25.6 8.4 39 191-231 149-187 (334)
438 PF02631 RecX: RecX family; I 29.1 2.7E+02 0.0058 21.4 11.9 107 269-381 9-116 (121)
439 smart00777 Mad3_BUB1_I Mad3/BU 29.1 2.9E+02 0.0062 21.7 7.5 44 339-382 80-123 (125)
440 TIGR03581 EF_0839 conserved hy 29.0 1.8E+02 0.0039 25.3 5.8 43 342-384 192-234 (236)
441 KOG2066 Vacuolar assembly/sort 27.8 7.6E+02 0.016 26.2 14.2 25 327-351 510-534 (846)
442 KOG0991 Replication factor C, 27.8 4.4E+02 0.0096 23.5 12.9 94 298-394 170-274 (333)
443 PRK11639 zinc uptake transcrip 27.5 2.7E+02 0.0058 23.2 6.7 38 182-219 38-75 (169)
444 PF09670 Cas_Cas02710: CRISPR- 27.4 5.6E+02 0.012 24.6 12.1 57 141-198 140-198 (379)
445 cd00280 TRFH Telomeric Repeat 27.1 3.9E+02 0.0086 22.7 11.6 68 338-409 85-159 (200)
446 PRK11639 zinc uptake transcrip 27.0 3.1E+02 0.0068 22.7 7.0 63 311-375 15-77 (169)
447 PF15297 CKAP2_C: Cytoskeleton 27.0 5.4E+02 0.012 24.3 9.1 69 147-215 118-186 (353)
448 cd07153 Fur_like Ferric uptake 26.9 1.4E+02 0.0029 22.8 4.6 36 183-218 14-49 (116)
449 PRK14963 DNA polymerase III su 26.8 6.5E+02 0.014 25.4 10.3 47 112-160 177-223 (504)
450 PRK14958 DNA polymerase III su 26.3 6.9E+02 0.015 25.2 12.3 32 127-160 195-226 (509)
451 COG2405 Predicted nucleic acid 26.1 1.4E+02 0.003 23.9 4.3 46 356-402 108-153 (157)
452 cd00245 Glm_e Coenzyme B12-dep 25.6 1.1E+02 0.0023 29.9 4.4 186 146-350 25-232 (428)
453 PF08424 NRDE-2: NRDE-2, neces 25.5 5.6E+02 0.012 23.9 17.0 126 185-318 47-185 (321)
454 PF15297 CKAP2_C: Cytoskeleton 25.2 5.9E+02 0.013 24.1 9.9 65 338-405 119-187 (353)
455 KOG0687 26S proteasome regulat 24.5 5.9E+02 0.013 23.9 15.4 97 288-386 105-209 (393)
456 PF04762 IKI3: IKI3 family; I 24.3 9.8E+02 0.021 26.4 15.0 196 137-348 699-927 (928)
457 PRK14951 DNA polymerase III su 24.2 8.2E+02 0.018 25.4 11.4 87 112-202 185-283 (618)
458 KOG2300 Uncharacterized conser 24.1 7.3E+02 0.016 24.8 18.1 159 181-359 335-522 (629)
459 PF02184 HAT: HAT (Half-A-TPR) 24.0 1.1E+02 0.0025 17.4 2.6 22 185-208 3-24 (32)
460 PF12862 Apc5: Anaphase-promot 23.8 2.9E+02 0.0063 20.1 7.5 21 330-350 49-69 (94)
461 PF07678 A2M_comp: A-macroglob 23.5 5.3E+02 0.011 22.9 8.5 165 223-399 33-238 (246)
462 COG2909 MalT ATP-dependent tra 23.4 9.6E+02 0.021 25.9 24.6 196 215-421 426-646 (894)
463 smart00386 HAT HAT (Half-A-TPR 23.4 1.3E+02 0.0028 15.9 3.8 13 338-350 3-15 (33)
464 PF09986 DUF2225: Uncharacteri 23.3 3E+02 0.0065 24.0 6.5 51 112-162 141-195 (214)
465 PRK10941 hypothetical protein; 23.0 5.7E+02 0.012 23.2 10.8 86 287-373 181-266 (269)
466 PF09868 DUF2095: Uncharacteri 22.9 3.6E+02 0.0078 20.8 5.8 35 293-328 67-101 (128)
467 PRK09462 fur ferric uptake reg 22.9 3.8E+02 0.0083 21.5 6.7 62 311-374 6-68 (148)
468 COG5187 RPN7 26S proteasome re 22.8 6.1E+02 0.013 23.4 14.7 98 286-385 114-219 (412)
469 KOG1166 Mitotic checkpoint ser 22.5 2.7E+02 0.0059 30.5 7.0 60 335-394 91-150 (974)
470 PF02847 MA3: MA3 domain; Int 22.5 3.4E+02 0.0074 20.3 7.8 22 174-195 7-28 (113)
471 COG4785 NlpI Lipoprotein NlpI, 22.1 5.5E+02 0.012 22.6 15.5 190 179-389 75-268 (297)
472 PRK14956 DNA polymerase III su 22.0 8.1E+02 0.018 24.5 11.1 34 203-236 247-280 (484)
473 KOG0991 Replication factor C, 21.8 5.8E+02 0.013 22.8 13.0 97 178-288 168-274 (333)
474 KOG4507 Uncharacterized conser 21.8 3.6E+02 0.0078 27.5 7.1 59 293-352 648-706 (886)
475 COG4003 Uncharacterized protei 21.4 3.2E+02 0.0069 19.6 5.2 23 330-352 39-61 (98)
476 PRK14963 DNA polymerase III su 21.3 8.5E+02 0.019 24.5 14.7 44 270-315 179-223 (504)
477 PF01475 FUR: Ferric uptake re 21.0 1.4E+02 0.003 23.0 3.6 20 185-204 23-42 (120)
478 KOG2422 Uncharacterized conser 20.8 9.2E+02 0.02 24.7 16.5 129 240-373 283-431 (665)
479 cd08315 Death_TRAILR_DR4_DR5 D 20.7 3.6E+02 0.0078 20.0 5.6 31 287-317 64-94 (96)
480 KOG1114 Tripeptidyl peptidase 20.7 1.1E+03 0.025 25.8 16.2 50 358-407 1231-1281(1304)
481 KOG2582 COP9 signalosome, subu 20.5 7.6E+02 0.016 23.6 13.3 14 267-280 198-211 (422)
482 PRK14961 DNA polymerase III su 20.4 7.5E+02 0.016 23.5 10.9 21 372-392 259-279 (363)
483 PF11838 ERAP1_C: ERAP1-like C 20.4 6.7E+02 0.015 23.0 23.2 110 292-409 134-251 (324)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.7e-51 Score=424.37 Aligned_cols=339 Identities=20% Similarity=0.293 Sum_probs=264.9
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV 185 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~ 185 (451)
+...+++++|.++|+.|.+. |+.||..+|+.||.+|++.|++++|.++|++|.+.|+.| |..+|+.||.+|++.|++
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P--dvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA--NVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCcCH
Confidence 55667788888888888865 888888888888888888888888888888888887665 778888888888888888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH
Q 013010 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265 (451)
Q Consensus 186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~ 265 (451)
++|.++|++|.+.|+.||..+||.+|.+|++.|++++|.++|++|...+..+.||..+|+++|.+|++.|+.+.|.+.+.
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888876322234888888888888888886665555432
Q ss_pred ------------------------HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 013010 266 ------------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321 (451)
Q Consensus 266 ------------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 321 (451)
+++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.+++++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 36677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013010 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401 (451)
Q Consensus 322 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 401 (451)
..+|+.||.+|++.|++++|.++|++|.+.+. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~-~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKL-RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77788888888888888888888887777776 77888888888888888888888888888877788888888888888
Q ss_pred HHHhcCCCchHHHHHHHHHHhchHHHHHHhhchhcccchhhhhcccCC
Q 013010 402 ALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLKCGEI 449 (451)
Q Consensus 402 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~k~g~~ 449 (451)
+|++.|+.+.|.+++.+|++.|+.|+......+.. +-.+.|.||+++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIg-lc~~~y~ka~~l 809 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG-LCLRRFEKACAL 809 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHHHHHHhhh
Confidence 88888888888888888887777776444333321 212346677654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.1e-51 Score=423.03 Aligned_cols=293 Identities=18% Similarity=0.224 Sum_probs=214.7
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV 185 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~ 185 (451)
+...|++++|.++|+.|.+. |+.||..+|+.||.+|++.|++++|.++|+.|.+.|+.| |..+|+.||.+|++.|++
T Consensus 482 y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P--D~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 482 CAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP--DRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCH
Confidence 44444555555555555543 555555555555555555555555555555555555443 444555555555555555
Q ss_pred HHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHH
Q 013010 186 NEALATFYRMKQ--FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263 (451)
Q Consensus 186 ~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~ 263 (451)
++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+. |+..+|+++|.+|++.|+.+.|.+.
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~--p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK--GTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CChHHHHHHHHHHHhcCCHHHHHHH
Confidence 555555555543 344555555555555555555555555555555555532 5555555555555555554444443
Q ss_pred HH------------------------HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 013010 264 IR------------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319 (451)
Q Consensus 264 ~~------------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 319 (451)
+. +++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 32 289999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399 (451)
Q Consensus 320 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 399 (451)
||..+||.||.+|++.|++++|.++|++|...|. .||..+|+.+|.+|++.|++++|.+++.+|.+.|+.||..+|++|
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi-~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGL-CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 013010 400 CDALN 404 (451)
Q Consensus 400 i~~~~ 404 (451)
+..|.
T Consensus 796 Iglc~ 800 (1060)
T PLN03218 796 TGLCL 800 (1060)
T ss_pred HHHHH
Confidence 97654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.8e-47 Score=388.56 Aligned_cols=314 Identities=14% Similarity=0.164 Sum_probs=245.3
Q ss_pred CCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc
Q 013010 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE 182 (451)
Q Consensus 103 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~ 182 (451)
.+.|...|++++|.++|+.|. .||..+||.++.+|++.|++++|.++|++|.+.|..| +..+|+.++.+|++.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p--~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA--EPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC--ChhhHHHHHHHHhcC
Confidence 344555555555555555553 2455555555555555555555555555555555433 445555555555555
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhH
Q 013010 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262 (451)
Q Consensus 183 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~ 262 (451)
|..+.+.+++..+.+.|+.||..+||+||++|++.|++++|.++|++|.. +|..+||+||.+|++.|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~~~vt~n~li~~y~~~g------- 304 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------KTTVAWNSMLAGYALHG------- 304 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------CChhHHHHHHHHHHhCC-------
Confidence 55555555555555666666666777777777777777778777777742 57777888888888877
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342 (451)
Q Consensus 263 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 342 (451)
++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.
T Consensus 305 ----~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 305 ----YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred ----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH-
Q 013010 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR- 421 (451)
Q Consensus 343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~- 421 (451)
++|++|. .||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..+++.++++.|.+
T Consensus 381 ~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 381 NVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 9999985 4788999999999999999999999999999999999999999999999999999999999999985
Q ss_pred hchHHHHHHhhchhcccchhhhhcccCCC
Q 013010 422 DGIEYRFRQVMKVKPIMKHKELLKCGEID 450 (451)
Q Consensus 422 ~g~~~~~~~~~~~~~~~~~~~~~k~g~~~ 450 (451)
.|+.|+...... .+ +.|.++|++|
T Consensus 456 ~g~~p~~~~y~~---li--~~l~r~G~~~ 479 (697)
T PLN03081 456 HRIKPRAMHYAC---MI--ELLGREGLLD 479 (697)
T ss_pred cCCCCCccchHh---HH--HHHHhcCCHH
Confidence 588775322111 11 4566666554
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=372.84 Aligned_cols=293 Identities=18% Similarity=0.179 Sum_probs=158.0
Q ss_pred CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010 104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183 (451)
Q Consensus 104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g 183 (451)
+.+...|++++|+++|++|.+. |+.|+..+|+.++.++++.|+.+.+.+++..+.+.|..+ +..+||+||.+|++.|
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~--d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG--DTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc--cceeHHHHHHHHHHCC
Confidence 4467778899999999999865 777776666655555555555555555555555554433 4444555555555555
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHH
Q 013010 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~ 263 (451)
++++|.++|++|.+ +|..+||++|.+|++.|++++|.++|++|.+.|+. ||..||++++.+|++.|
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~--pd~~t~~~ll~a~~~~g-------- 339 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS--IDQFTFSIMIRIFSRLA-------- 339 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcc--------
Confidence 55555555555542 34555555555555555555555555555555532 55555555555555555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC-------------------------------CHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 013010 264 IRRRIWEANHLFRLMLFKGFVP-------------------------------DVVAYNCLIDGCCKTYRIERALELFDD 312 (451)
Q Consensus 264 ~~~~~~~a~~~~~~m~~~~~~~-------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~ 312 (451)
++++|.+++..|.+.|+.| |..+||+||.+|++.|+.++|.++|++
T Consensus 340 ---~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 340 ---LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred ---chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444444444444 445555555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 013010 313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL-NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391 (451)
Q Consensus 313 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 391 (451)
|.+.|+.||..||+.+|.+|++.|.+++|.++|+.|.+. +. .|+..+|+.++++|++.|++++|.+++++| ++.|
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~-~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p 492 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI-KPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKP 492 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC-CCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCC
Confidence 555555555555555555555555555555555555432 22 455555555555555555555555544433 3445
Q ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 392 REYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 392 ~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
+..+|++|+.+|+..|+.+.+.++++++.
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 55555555555555555555544444443
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-44 Score=381.14 Aligned_cols=340 Identities=20% Similarity=0.230 Sum_probs=287.6
Q ss_pred hhhhhhhcCcccCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhH----------------------------------
Q 013010 90 IANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTC---------------------------------- 135 (451)
Q Consensus 90 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~---------------------------------- 135 (451)
..|++++.+ +...+.+++|+++|+.|... |+.||..||
T Consensus 153 ~~~n~li~~-------~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (857)
T PLN03077 153 FSWNVLVGG-------YAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224 (857)
T ss_pred eEHHHHHHH-------HHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccch
Confidence 455555544 66778899999999999865 777766555
Q ss_pred -HHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 013010 136 -KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214 (451)
Q Consensus 136 -~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 214 (451)
|+|+.+|++.|+++.|.++|++|.. ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 5666667777788888888877753 366789999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH--------------------HHHHHHHHH
Q 013010 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR--------------------RRIWEANHL 274 (451)
Q Consensus 215 ~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~--------------------~~~~~a~~~ 274 (451)
++.|+.+.|.+++..|.+.|+. ||..+|++||.+|++.|+.+.+.+.+. +++++|.++
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~--~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFA--VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCc--cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999999965 999999999999999999888887664 578999999
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Q 013010 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH- 353 (451)
Q Consensus 275 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 353 (451)
|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.+.
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v 456 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence 9999999999999999999999999999999999999999999999999999999999988888888888887755321
Q ss_pred --------------------------------------------------------------------------------
Q 013010 354 -------------------------------------------------------------------------------- 353 (451)
Q Consensus 354 -------------------------------------------------------------------------------- 353 (451)
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence
Q ss_pred -------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 354 -------------GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 354 -------------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
..||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.+++.++++.|.
T Consensus 537 ~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 537 CGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred cCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 0356677888999999999999999999999999999999999999999999999999999999999
Q ss_pred -HhchHHHHHHhhchhcccchhhhhcccCCC
Q 013010 421 -RDGIEYRFRQVMKVKPIMKHKELLKCGEID 450 (451)
Q Consensus 421 -~~g~~~~~~~~~~~~~~~~~~~~~k~g~~~ 450 (451)
+.|+.|+...... | -+.|.++|+++
T Consensus 617 ~~~gi~P~~~~y~~----l-v~~l~r~G~~~ 642 (857)
T PLN03077 617 EKYSITPNLKHYAC----V-VDLLGRAGKLT 642 (857)
T ss_pred HHhCCCCchHHHHH----H-HHHHHhCCCHH
Confidence 7898886433222 1 25677777765
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.9e-43 Score=368.74 Aligned_cols=303 Identities=20% Similarity=0.210 Sum_probs=244.1
Q ss_pred hhhhhhhcCcccCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccH
Q 013010 90 IANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTT 169 (451)
Q Consensus 90 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 169 (451)
+.|++++.+ |...+.+++|+++|+.|.+. |+.||..+|+.++.+|++.|+++.|.+++..|.+.|..| +.
T Consensus 254 ~s~n~li~~-------~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~--d~ 323 (857)
T PLN03077 254 ISWNAMISG-------YFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV--DV 323 (857)
T ss_pred chhHHHHHH-------HHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc--ch
Confidence 455565555 66677788999999999876 888998899988888888888888888888888888765 77
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 013010 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (451)
Q Consensus 170 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~ 249 (451)
.+||+||.+|++.|++++|.++|++|.. ||..+||++|.+|++.|++++|.++|++|.+.|+. ||..||++++.
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~--Pd~~t~~~ll~ 397 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS--PDEITIASVLS 397 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--CCceeHHHHHH
Confidence 7888888888888888888888888864 67788888888888888888888888888888854 88888888888
Q ss_pred HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------------
Q 013010 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK------------- 316 (451)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------- 316 (451)
+|++.| ++++|.++++.|.+.|+.|+..+||+||.+|++.|++++|.++|++|.+.
T Consensus 398 a~~~~g-----------~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~ 466 (857)
T PLN03077 398 ACACLG-----------DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466 (857)
T ss_pred HHhccc-----------hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 888888 55555555555555555555555555555555555555555544444321
Q ss_pred -----------------CC-------------------------------------------------------------
Q 013010 317 -----------------GC------------------------------------------------------------- 318 (451)
Q Consensus 317 -----------------g~------------------------------------------------------------- 318 (451)
++
T Consensus 467 ~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~ 546 (857)
T PLN03077 467 LNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546 (857)
T ss_pred HCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH
Confidence 12
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-hCCCCCCH
Q 013010 319 ----IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV-DGGSVPRE 393 (451)
Q Consensus 319 ----~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~ 393 (451)
.||..+||++|.+|++.|+.++|.++|++|.+.|. .||..||+.+|.+|++.|++++|.++|++|. +.|+.|+.
T Consensus 547 f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~-~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 547 FNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV-NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 45667788889999999999999999999999998 9999999999999999999999999999999 78999999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 394 YTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 394 ~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
.+|+.++.+|+++|++++|.+.+++|-
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 999999999999999999999999883
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=7.5e-20 Score=176.89 Aligned_cols=300 Identities=15% Similarity=0.079 Sum_probs=248.1
Q ss_pred hhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CccHHhHHHHHHHHHhcCCH
Q 013010 107 KVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVLGEEGLV 185 (451)
Q Consensus 107 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~~li~~~~~~g~~ 185 (451)
...+++++|+..|+.+.+. .+.+..++..+...+...|++++|..+++.+...+..+ ......+..+...|...|++
T Consensus 46 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3456789999999999864 33456789999999999999999999999998864221 11235688899999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHhcCCchhhhH
Q 013010 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD---VYTYTILISSYCKYGMQTGCRK 262 (451)
Q Consensus 186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~---~~~~~~li~~~~~~g~~~~~~~ 262 (451)
++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+...+.. ++. ...+..+...+.+.|
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~------- 194 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-SLRVEIAHFYCELAQQALARG------- 194 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhCC-------
Confidence 99999999998753 456889999999999999999999999999876522 111 224566777888888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342 (451)
Q Consensus 263 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 342 (451)
++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.+..+|...|++++|.
T Consensus 195 ----~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 195 ----DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred ----CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999998753 33456788888999999999999999999987642223567889999999999999999
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCCchHHHHHHHH
Q 013010 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA---AEEPSLLDDGLRKR 419 (451)
Q Consensus 343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~~a~~~~~~~ 419 (451)
..++++.+.. |+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+.+...++++
T Consensus 270 ~~l~~~~~~~---p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 270 EFLRRALEEY---PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHhC---CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 9999998863 66677788999999999999999999998875 6899999999988875 55888899999999
Q ss_pred HHhchHHH
Q 013010 420 IRDGIEYR 427 (451)
Q Consensus 420 ~~~g~~~~ 427 (451)
.+.++.+.
T Consensus 345 ~~~~~~~~ 352 (389)
T PRK11788 345 VGEQLKRK 352 (389)
T ss_pred HHHHHhCC
Confidence 99888765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=4.1e-17 Score=174.51 Aligned_cols=296 Identities=11% Similarity=0.018 Sum_probs=226.8
Q ss_pred CCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh
Q 013010 102 YRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE 181 (451)
Q Consensus 102 ~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~ 181 (451)
.+..+...+++++|+.+++.+.+. .+.+...|..+...+.+.|++++|...++.+.+... .+...+..+..++..
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP---DSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHH
Confidence 345567788899999999998753 456778899999999999999999999999988752 255678889999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh
Q 013010 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261 (451)
Q Consensus 182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~ 261 (451)
.|++++|..+|+++.+.. +.+..++..+...+...|++++|.++++.+.... +.+...+..+...+.+.|
T Consensus 648 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g------ 717 (899)
T TIGR02917 648 MKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---PKAALGFELEGDLYLRQK------ 717 (899)
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCChHHHHHHHHHHHHCC------
Confidence 999999999999998753 3457888999999999999999999999998875 357778888888999998
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341 (451)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 341 (451)
++++|...|+.+...+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|+.++|
T Consensus 718 -----~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A 789 (899)
T TIGR02917 718 -----DYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKA 789 (899)
T ss_pred -----CHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 7778888887777653 444666667777777888888887777777653 33567777777777777888888
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 342 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
.++|+++.+.. +.+...++.+...+...|+ .+|..++++..+.. +-+..++..+...+...|++++|.+.++++++
T Consensus 790 ~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 790 IKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88887777765 5566777777777777777 66777777776542 12345566667777777777777777777776
Q ss_pred hch
Q 013010 422 DGI 424 (451)
Q Consensus 422 ~g~ 424 (451)
.+.
T Consensus 866 ~~~ 868 (899)
T TIGR02917 866 IAP 868 (899)
T ss_pred hCC
Confidence 544
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=5.7e-17 Score=156.81 Aligned_cols=263 Identities=14% Similarity=0.090 Sum_probs=220.0
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHH
Q 013010 139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD---VYAYNVVINALC 215 (451)
Q Consensus 139 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~ 215 (451)
...+...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP---ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4445678999999999999999753 3567899999999999999999999999988542222 356888899999
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC----HhhHH
Q 013010 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD----VVAYN 291 (451)
Q Consensus 216 ~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~ 291 (451)
+.|++++|..+|+++.+.. +++..+++.++..+.+.| ++++|.+.++.+.+.+..++ ...+.
T Consensus 119 ~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 184 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG---DFAEGALQQLLEIYQQEK-----------DWQKAIDVAERLEKLGGDSLRVEIAHFYC 184 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC---cchHHHHHHHHHHHHHhc-----------hHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 9999999999999998764 367889999999999999 99999999999987643322 12456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc
Q 013010 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371 (451)
Q Consensus 292 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 371 (451)
.+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++++|.++++++.+.+. .....+++.+..+|++.
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP-EYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHc
Confidence 67778889999999999999998763 22466788888999999999999999999987642 22246788999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422 (451)
Q Consensus 372 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 422 (451)
|++++|...++++.+. .|+...+..+...+.+.|+++.|...+.++++.
T Consensus 263 g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 263 GDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred CCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999875 466677789999999999999999999998865
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.81 E-value=1.9e-16 Score=169.46 Aligned_cols=292 Identities=10% Similarity=0.032 Sum_probs=248.2
Q ss_pred CCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc
Q 013010 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE 182 (451)
Q Consensus 103 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~ 182 (451)
+..+...++.++|..+|+.+... .+.+...+..++..+.+.|++++|..+++.+.+... .+..+|..+..+|...
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP---DSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHc
Confidence 34566678899999999998754 345667788899999999999999999999987652 3567899999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhH
Q 013010 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262 (451)
Q Consensus 183 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~ 262 (451)
|++++|...|+.+.+.. +.+...+..+..++...|++++|..+|+++.... +.+..++..+...+...|
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~------- 683 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK---PDNTEAQIGLAQLLLAAK------- 683 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcC-------
Confidence 99999999999998754 3467788889999999999999999999988764 357889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342 (451)
Q Consensus 263 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 342 (451)
++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.|+.+...+ |+..++..+...+.+.|++++|.
T Consensus 684 ----~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 684 ----RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred ----CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHH
Confidence 8999999999998764 4567788888899999999999999999988864 55678888899999999999999
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
+.++++.+.. +.+...+..+...|...|+.++|.++|+++.+.. +.+...+..+...+...|+ ..|...+++.++
T Consensus 757 ~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 757 KTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 9999998876 5678889999999999999999999999998764 4567889999999999999 778888888875
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=8.2e-15 Score=132.32 Aligned_cols=316 Identities=16% Similarity=0.194 Sum_probs=240.3
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHc--cCC-hhHHHHHHHHHHHcCC-----------------CCCcc
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFAR--GNN-VKGLWDFLKDMSRRGN-----------------GELVT 168 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~--~g~-~~~a~~~~~~m~~~~~-----------------~~~~~ 168 (451)
.+.++.+.-+|+.|... |++.+...-..|+...+- +.+ .-.-++-|-.|...|. ..+.+
T Consensus 128 ~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 128 SREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 45688999999999876 887777766666554332 222 2122333444433321 11235
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (451)
Q Consensus 169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li 248 (451)
..+|.+||.++|+-...+.|.++|++-.....+.+..+||.+|.+-.-.. -.+++.+|...... ||..|+|+++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~--Pnl~TfNalL 280 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT--PNLFTFNALL 280 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC--CchHhHHHHH
Confidence 67899999999999999999999999999888999999999998765333 38899999999865 9999999999
Q ss_pred HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHH----hCCCCC---
Q 013010 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER-ALELFDDMN----KKGCIP--- 320 (451)
Q Consensus 249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~----~~g~~p--- 320 (451)
.+..+.|+... ....|++++.+|++-|+.|...+|..+|..+++.++..+ |.-++.+.. ....+|
T Consensus 281 ~c~akfg~F~~-------ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 281 SCAAKFGKFED-------ARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HHHHHhcchHH-------HHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 99999996654 344788999999999999999999999999999888754 444444443 233333
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 013010 321 -NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG---VPT---SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393 (451)
Q Consensus 321 -~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 393 (451)
|..-|..-|..|.+..+.+.|..+-.-+...... .|+ ..-|..+..+.|.....+.-+..|+.|+-.-+-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 5566778888888999999998887766543211 233 235678888899999999999999999988888999
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHHHHHhhchhccc
Q 013010 394 YTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIM 438 (451)
Q Consensus 394 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~ 438 (451)
.+...+++|..-.|.++...+++..++.-|..-+-.-...++..|
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL 478 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999888554433333433333
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.69 E-value=1.7e-13 Score=139.93 Aligned_cols=298 Identities=11% Similarity=-0.000 Sum_probs=209.5
Q ss_pred hhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHH
Q 013010 107 KVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN 186 (451)
Q Consensus 107 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~ 186 (451)
...++.++|++.|+.+... -+.+...+..+...+.+.|++++|...+++..+... .+...+..+...+...|+.+
T Consensus 87 l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P---~~~~a~~~la~~l~~~g~~~ 161 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS---GNSQIFALHLRTLVLMDKEL 161 (656)
T ss_pred hhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHCCChH
Confidence 3467777888888777643 233455667777777788888888888887777642 24556777777788888888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHH
Q 013010 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266 (451)
Q Consensus 187 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~ 266 (451)
+|...++.+....- .+...+..+ ..+...|++++|...++.+..... .++...+..+...+.+.|
T Consensus 162 eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~--~~~~~~~~~l~~~l~~~g----------- 226 (656)
T PRK15174 162 QAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFA--LERQESAGLAVDTLCAVG----------- 226 (656)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC--CcchhHHHHHHHHHHHCC-----------
Confidence 88888877765432 222333232 346777888888888877765531 133444455566777777
Q ss_pred HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER----ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 342 (451)
++++|...++...+.. +.+...+..+...+...|++++ |...|+...+.. +.+...+..+...+...|++++|.
T Consensus 227 ~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 227 KYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888887653 3356677778888888888885 788888887652 225678888888889999999999
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE-YTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
..+++..+.. +.+...+..+...+.+.|++++|.+.++.+.+.+ |+. ..+..+..++...|+.++|...+++.++
T Consensus 305 ~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 305 PLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999888765 4455667778888889999999999998888653 443 3344456778889999999999888875
Q ss_pred hc---hHHHHHH
Q 013010 422 DG---IEYRFRQ 430 (451)
Q Consensus 422 ~g---~~~~~~~ 430 (451)
.. ....|.+
T Consensus 381 ~~P~~~~~~~~e 392 (656)
T PRK15174 381 ARASHLPQSFEE 392 (656)
T ss_pred hChhhchhhHHH
Confidence 43 3444543
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.69 E-value=3e-13 Score=138.11 Aligned_cols=288 Identities=12% Similarity=0.009 Sum_probs=154.7
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 188 (451)
.|+.++|+.+++..... .+-+...+..++.+....|++++|...++++...... +...+..+...+...|++++|
T Consensus 55 ~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~---~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 55 KDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC---QPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred cCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHH
Confidence 45556666666655543 2223334444445555566666666666666655421 334455556666666666666
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 013010 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268 (451)
Q Consensus 189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~ 268 (451)
...|++..+.. +.+...+..+..++...|++++|...++.+....- .+...+..+ ..+.+.| ++
T Consensus 130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P---~~~~a~~~~-~~l~~~g-----------~~ 193 (656)
T PRK15174 130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP---PRGDMIATC-LSFLNKS-----------RL 193 (656)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC---CCHHHHHHH-HHHHHcC-----------CH
Confidence 66666665531 22345555556666666666666666665544331 122222222 2355555 56
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHH
Q 013010 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK----AIEM 344 (451)
Q Consensus 269 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~----A~~~ 344 (451)
++|...++.+.+..-.++...+..+..++...|++++|.+.++...+.. +-+...+..+-..|...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 6666666665544222233333444455566666666666666655542 1234555556666666666654 5666
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 345 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
|++..+.. +.+...+..+...+...|++++|...+++..+.. +-+...+..+..++.+.|+++.|.+.+.+..+
T Consensus 273 ~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 273 WRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66665543 3344555666666666666666666666655532 11234455555666666666666666665553
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1e-12 Score=119.04 Aligned_cols=288 Identities=17% Similarity=0.215 Sum_probs=206.9
Q ss_pred CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 013010 129 FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208 (451)
Q Consensus 129 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 208 (451)
+.+..+|..||.++|+--..+.|.+++.+......+ ++..+||.+|.+-.-... .+++.+|.+..+.||..|+|
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k--v~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK--VYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe--eeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 447889999999999999999999999998877544 488899999977543322 68899999999999999999
Q ss_pred HHHHHHHhcCChHH----HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH-------------------
Q 013010 209 VVINALCRVGNFNK----ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR------------------- 265 (451)
Q Consensus 209 ~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~------------------- 265 (451)
+++.+..+.|+++. |.+++.+|++.|+. |...+|..+|..+++.+++.+....+-
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVe--PsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVE--PSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC--cchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 99999999998765 67788999999976 999999999999999997744332211
Q ss_pred --------------HHHHHHHHHHHHHHhc----CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 013010 266 --------------RRIWEANHLFRLMLFK----GFVPD---VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324 (451)
Q Consensus 266 --------------~~~~~a~~~~~~m~~~----~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 324 (451)
.+.+.|.++..-.... -+.|+ .+-|..+....|.....+.-...|+.|.-.-+-|+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 1222333332222110 01222 12245566666777777777777777776667777888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------------------------------------
Q 013010 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNH--------------------------------------------------- 353 (451)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------------------------------------------------- 353 (451)
...++++..-.|.++-.-++|.++...|+
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~ 515 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ 515 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 88888888888888888888877777663
Q ss_pred --CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhch
Q 013010 354 --GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS----VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424 (451)
Q Consensus 354 --~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~ 424 (451)
........+.+.-.+.+.|..++|.+++..+.+.+- .|......-++++-.+..+...|...+.-+...++
T Consensus 516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 012233455556667788888888888888865432 23444445666777777788878888887765443
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.61 E-value=6.3e-12 Score=128.49 Aligned_cols=299 Identities=11% Similarity=-0.022 Sum_probs=232.7
Q ss_pred cCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHH
Q 013010 101 AYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG 180 (451)
Q Consensus 101 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~ 180 (451)
..++.+...+++++|+..|+.... ..|+...|..+..+|.+.|++++|.+.++...+.+. .+...|..+..+|.
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p---~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP---DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHH
Confidence 334556677889999999999874 567888899999999999999999999999988752 25668889999999
Q ss_pred hcCCHHHHHHHHHHHhhCCC----------------------------CC----CHHHHHHH------------------
Q 013010 181 EEGLVNEALATFYRMKQFRC----------------------------RP----DVYAYNVV------------------ 210 (451)
Q Consensus 181 ~~g~~~~A~~~~~~m~~~g~----------------------------~p----~~~~~~~l------------------ 210 (451)
..|++++|+.-|......+- .| ........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999999876654432110 00 00000000
Q ss_pred ---------HHHH------HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHH
Q 013010 211 ---------INAL------CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275 (451)
Q Consensus 211 ---------i~~~------~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~ 275 (451)
+..+ ...+++++|.+.|++....+...+.....|+.+...+...| ++++|...+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g-----------~~~eA~~~~ 354 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG-----------KHLEALADL 354 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-----------CHHHHHHHH
Confidence 0000 11257889999999988765211235567888888888999 899999999
Q ss_pred HHHHhcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 013010 276 RLMLFKGFVPD-VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354 (451)
Q Consensus 276 ~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 354 (451)
++..+. .|+ ...|..+...+...|++++|...|+...+.. +-+..+|..+...|...|++++|...|++..+..
T Consensus 355 ~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-- 429 (615)
T TIGR00990 355 SKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-- 429 (615)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 998865 344 5578888888999999999999999987763 2357889999999999999999999999999875
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422 (451)
Q Consensus 355 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 422 (451)
+.+...+..+...+.+.|++++|...|++.++.. +-+...|..+..++...|+++.|.+.+++.+..
T Consensus 430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4567788888899999999999999999988642 334778899999999999999999999887753
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.59 E-value=9.7e-13 Score=124.21 Aligned_cols=286 Identities=16% Similarity=0.136 Sum_probs=232.1
Q ss_pred hhhcCcccCCCchhhhcCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhH
Q 013010 94 VLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHN-EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV 172 (451)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 172 (451)
.+..+.+..+-.+...|+...|+..|++..+ +.|+ ...|-.|...|...+.++.|...+.+..... +....++
T Consensus 216 ~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr---pn~A~a~ 289 (966)
T KOG4626|consen 216 CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR---PNHAVAH 289 (966)
T ss_pred ceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC---Ccchhhc
Confidence 4566666777777788889999999998873 4555 3568889999999999999999998877654 2356778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (451)
Q Consensus 173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~ 251 (451)
..+...|-..|.++-|+..|++..+. .|+ ...||.|.+++-..|++.+|.+.|.+..... +--..+.+.|...|
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~---p~hadam~NLgni~ 364 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC---PNHADAMNNLGNIY 364 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC---CccHHHHHHHHHHH
Confidence 88888899999999999999998874 565 6889999999999999999999999888764 44667889999999
Q ss_pred HhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 013010 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD-VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFI 329 (451)
Q Consensus 252 ~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li 329 (451)
...| .+++|..+|....+- -|. ...+|.|...|-+.|++++|..-|++...- .|+ ...|+.+-
T Consensus 365 ~E~~-----------~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmG 429 (966)
T KOG4626|consen 365 REQG-----------KIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMG 429 (966)
T ss_pred HHhc-----------cchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcc
Confidence 9999 888999888877754 343 467899999999999999999999998764 676 67899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 013010 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEE 408 (451)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~ 408 (451)
..|-..|+++.|.+.+.+....+ +.-...++.|...|..+|++.+|+.-|++..+ ++|| ...|-.++.++.--.+
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhc
Confidence 99999999999999999988865 44567889999999999999999999998876 5566 3455555555443333
Q ss_pred C
Q 013010 409 P 409 (451)
Q Consensus 409 ~ 409 (451)
+
T Consensus 506 w 506 (966)
T KOG4626|consen 506 W 506 (966)
T ss_pred c
Confidence 3
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.58 E-value=3.1e-13 Score=127.50 Aligned_cols=297 Identities=13% Similarity=0.060 Sum_probs=223.3
Q ss_pred hhcCcccCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHH
Q 013010 95 LVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC 174 (451)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 174 (451)
..-.++.+++.++..|.+++|+..++.+.+. -+.....|..+..++...|+.+.|...|....+.+... .-..+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l---~ca~s~ 189 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL---YCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch---hhhhcc
Confidence 3444666778888999999999999999853 23356789999999999999999999999888875321 112233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh
Q 013010 175 LIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (451)
Q Consensus 175 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~ 253 (451)
+-......|++++|...|.+..+. .|. ...|..|...+-.+|++..|+..|++..... |-=...|-.|-..|..
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld---P~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD---PNFLDAYINLGNVYKE 264 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC---CcchHHHhhHHHHHHH
Confidence 344445578899999988887763 343 5678888888889999999999999988765 2234567777777777
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 013010 254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD-VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRY 331 (451)
Q Consensus 254 ~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~ 331 (451)
.+ .++.|...+.+.... .|+ ...+..+...|...|.+|.|+..|++..+. .|+ ...|+.|..+
T Consensus 265 ~~-----------~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 265 AR-----------IFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANA 329 (966)
T ss_pred Hh-----------cchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHH
Confidence 77 777887777766543 454 456777777788888888888888888775 565 6788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCCc
Q 013010 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEEPS 410 (451)
Q Consensus 332 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~ 410 (451)
+-..|++.+|...+++..... .--..+.+.|-..|...|.+++|..+|....+ +.|. ....+.|...|.+.|+++
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHH
Confidence 888888888888888888765 34556778888888888888888888877765 4454 456778888888888888
Q ss_pred hHHHHHHHHH
Q 013010 411 LLDDGLRKRI 420 (451)
Q Consensus 411 ~a~~~~~~~~ 420 (451)
+|..-+++.+
T Consensus 406 ~Ai~~Ykeal 415 (966)
T KOG4626|consen 406 DAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHH
Confidence 7755544443
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.55 E-value=2.2e-11 Score=124.57 Aligned_cols=257 Identities=14% Similarity=0.042 Sum_probs=189.3
Q ss_pred cCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010 110 LGLNKATEFYHWVERFFDFFH-NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188 (451)
Q Consensus 110 ~~~~~A~~~f~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 188 (451)
+++++|++.|+...+.....| ....++.+...+...|++++|...++....... .....|..+...+...|++++|
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P---~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP---RVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHCCCHHHH
Confidence 457788888888875422223 345677778888888999999999988887642 2455677888888888999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 013010 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268 (451)
Q Consensus 189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~ 268 (451)
...|++..+.. +-+..+|..+...+...|++++|...|++..... |.+...+..+...+.+.| ++
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~---P~~~~~~~~la~~~~~~g-----------~~ 449 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD---PDFIFSHIQLGVTQYKEG-----------SI 449 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---ccCHHHHHHHHHHHHHCC-----------CH
Confidence 99998887753 3357788888888888899999999998888765 346777778888888888 88
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHH
Q 013010 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR------VTYNSFIRYYSVVNEIDKAI 342 (451)
Q Consensus 269 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~~li~~~~~~g~~~~A~ 342 (451)
++|+..|++..+. .+-+...++.+...+...|++++|.+.|+...+..-..+. ..++.....|...|++++|.
T Consensus 450 ~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~ 528 (615)
T TIGR00990 450 ASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAE 528 (615)
T ss_pred HHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence 8888888887754 2334677888888888889999999988887765211111 11222223344468889999
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
+++++..... +.+...+..+...+...|++++|.++|++..+.
T Consensus 529 ~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 529 NLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9988877754 344557788888888899999999988887654
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.54 E-value=5.2e-11 Score=129.94 Aligned_cols=299 Identities=12% Similarity=0.079 Sum_probs=215.1
Q ss_pred chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHH----------
Q 013010 105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC---------- 174 (451)
Q Consensus 105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~---------- 174 (451)
.+...+++++|+..|+.+... .+.+...+..+...+...|++++|.+.|++..+.... +...+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~---~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG---NTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCH
Confidence 344578899999999999864 3345667778899999999999999999998876422 2222222
Q ss_pred --------------------------------HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH
Q 013010 175 --------------------------------LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (451)
Q Consensus 175 --------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 222 (451)
+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 2234456788888888888888743 2246677778888889999999
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH---------------------------------HHHH
Q 013010 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR---------------------------------RRIW 269 (451)
Q Consensus 223 a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~---------------------------------~~~~ 269 (451)
|...++++.+.. |.+...+..+...+...++.+.+...+. ++.+
T Consensus 514 A~~~l~~al~~~---P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 514 ADALMRRLAQQK---PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 999999887653 2344444444444455554333322211 1344
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349 (451)
Q Consensus 270 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 349 (451)
+|..+++ ..+.+...+..+...+.+.|++++|.+.|+...+.. +-+...+..+...|...|+.++|++.++...
T Consensus 591 eA~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4444444 123455667778888899999999999999988763 2367888999999999999999999999887
Q ss_pred hcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS--VP---REYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 350 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p---~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
+.. +.+...+..+..++...|++++|.++++.+....- .| +...+..+...+...|+.+.|.+.+++.+
T Consensus 665 ~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 665 ATA--NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred ccC--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 654 34556667777888899999999999999886432 22 23566677888999999999999988886
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=1.4e-13 Score=126.54 Aligned_cols=255 Identities=18% Similarity=0.096 Sum_probs=76.1
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHN-EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL 184 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~ 184 (451)
+-..+++++|+++++..... ..+|+ ...|..+.......++++.|.+.++++...+.. +...+..++.. ...++
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA---NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc---ccccccccccc-ccccc
Confidence 44455566666666433222 11222 233333334444456666666666666555422 33345555554 45666
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHH
Q 013010 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~ 264 (451)
+++|.++++...+.. ++...+..++..+.+.++++++..+++.+....- .+++...|..+...+.+.|
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~G--------- 160 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-APDSARFWLALAEIYEQLG--------- 160 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCC---------
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC---------
Confidence 666666665554432 3445555556666666666666666666543221 1345555666666666666
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 013010 265 RRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343 (451)
Q Consensus 265 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 343 (451)
+.++|++.+++..+. .| |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.
T Consensus 161 --~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 161 --DPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp --HHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred --CHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccc
Confidence 666666666666554 23 34555556666666666666666665555442 2344455566666666666666666
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384 (451)
Q Consensus 344 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 384 (451)
+|++..+.. +.|+.....+.+++...|+.++|.++..+.
T Consensus 236 ~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 236 YLEKALKLN--PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHS--TT-HHHHHHHHHHHT---------------
T ss_pred ccccccccc--cccccccccccccccccccccccccccccc
Confidence 666665544 345555566666666666666666665544
No 21
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=1.7e-10 Score=111.11 Aligned_cols=285 Identities=10% Similarity=0.038 Sum_probs=212.0
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHH-HHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEM-GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 187 (451)
.|++++|........+. .++...+..+ ..+..+.|+++.|.+.+.++.+..... .....-.....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~--~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADND--QLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHCCCHHH
Confidence 57889999888776543 2223333333 444478999999999999998764221 11111233567888999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCH------HHHHHHHHHHHhcCCchhhh
Q 013010 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV------YTYTILISSYCKYGMQTGCR 261 (451)
Q Consensus 188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~------~~~~~li~~~~~~g~~~~~~ 261 (451)
|.+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+.. +|.. .+|..++.......
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~l~~~~~~~~------ 243 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-DEEHRAMLEQQAWIGLMDQAMADQ------ 243 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 999999998865 346788889999999999999999999999998753 2221 12233333332322
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341 (451)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 341 (451)
+.+...++++.+... .+.+......+...+...|+.++|.+++++..+. .||... .++.+....++.+++
T Consensus 244 -----~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~a 313 (398)
T PRK10747 244 -----GSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQL 313 (398)
T ss_pred -----CHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHH
Confidence 344555566555432 3457788888999999999999999999998875 455522 234444566999999
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 342 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
.+..+...+.. +-|...+..+-..|.+.|++++|.+.|+...+ ..|+..+|..+..++.+.|+.++|.+.+++-.
T Consensus 314 l~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 314 EKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999875 45666788889999999999999999999987 46999999999999999999999988777543
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.50 E-value=1.4e-10 Score=126.50 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=83.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHH
Q 013010 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376 (451)
Q Consensus 297 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 376 (451)
+...|+.++|.++++. .+.+...+..+...|.+.|+.++|++.|++..+.. +.+...+..+...|...|++++
T Consensus 583 l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHH
Confidence 3344444444444441 12344556667777888888888888888888765 4567788888888889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010 377 ARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422 (451)
Q Consensus 377 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 422 (451)
|.+.++...+.. +-+..++..+..++...|++++|.+.+++.+..
T Consensus 656 A~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 656 ARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999988776532 123456667778888899999898888887753
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=3.1e-13 Score=124.25 Aligned_cols=261 Identities=14% Similarity=0.091 Sum_probs=113.5
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 013010 137 EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216 (451)
Q Consensus 137 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 216 (451)
.+...+.+.|++++|++++........ ++.+...|..+...+-..++.+.|.+.|+++.+.+-. +...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~-~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA-PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 567888899999999999965544431 1224555666777777899999999999999986533 56677777777 78
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC-CCCCHhhHHHHHH
Q 013010 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLID 295 (451)
Q Consensus 217 ~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~ 295 (451)
.+++++|.+++...-+.. ++...+..++..+.+.+ +++++..+++...... .+.+...|..+..
T Consensus 90 ~~~~~~A~~~~~~~~~~~----~~~~~l~~~l~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 154 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD----GDPRYLLSALQLYYRLG-----------DYDEAEELLEKLEELPAAPDSARFWLALAE 154 (280)
T ss_dssp --------------------------------H-HHHTT------------HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred cccccccccccccccccc----cccchhhHHHHHHHHHh-----------HHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 999999999998765543 56677888899999999 8899999998876532 3567788888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 013010 296 GCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374 (451)
Q Consensus 296 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 374 (451)
.+.+.|+.++|.+.+++..+. .| |....+.++..+...|+.+++.+++....+.. ..|...+..+..+|...|+.
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccc
Confidence 999999999999999999887 46 57788899999999999999999999988875 46667888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 375 LEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 375 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
++|..++++..+.. +-|..+...+.+++...|+.+.|.++.++..
T Consensus 231 ~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 231 EEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 99999999988742 3378888999999999999999988877554
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.49 E-value=5.8e-10 Score=116.51 Aligned_cols=304 Identities=12% Similarity=0.068 Sum_probs=179.2
Q ss_pred hhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHH
Q 013010 107 KVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN 186 (451)
Q Consensus 107 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~ 186 (451)
...|+.++|++++...... -+.+...+..+..++.+.|++++|.+++++..+... .+...+..+...+...|+.+
T Consensus 26 ~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP---QNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHH
Confidence 3456677777777776531 233455577777777777888888888877776642 13445667777777778888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH-
Q 013010 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR- 265 (451)
Q Consensus 187 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~- 265 (451)
+|...+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. |.+...+..+...+...+..+.+.+.+.
T Consensus 101 eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~---P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 101 EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA---PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 8888887777642 23444 6677777777788888888887777664 2344555556666665555443332221
Q ss_pred -------------------------------HHH---HHHHHHHHHHHhc-CCCCCHh-hHH----HHHHHHHhcCCHHH
Q 013010 266 -------------------------------RRI---WEANHLFRLMLFK-GFVPDVV-AYN----CLIDGCCKTYRIER 305 (451)
Q Consensus 266 -------------------------------~~~---~~a~~~~~~m~~~-~~~~~~~-~~~----~li~~~~~~g~~~~ 305 (451)
+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|++++
T Consensus 176 ~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 176 ANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 112 4566666666543 1122211 111 11334456677777
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHH
Q 013010 306 ALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP--TSSSYTPIIHALCEAGRVLEARDFLA 382 (451)
Q Consensus 306 a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~ 382 (451)
|...|+.+.+.+-. |+. .-..+...|...|++++|+.+|+++.+.....+ ....+..+..++...|++++|.++++
T Consensus 256 A~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 77777777766421 321 111135567777777777777777665331110 12345555556677777777777777
Q ss_pred HHHhCC-----------CCCC---HHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 383 ELVDGG-----------SVPR---EYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 383 ~m~~~g-----------~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
.+.+.. -.|+ ...+..+...+...|+.++|.+.+++...
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 776542 1122 12344556667777777777777776653
No 25
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=5.4e-10 Score=108.28 Aligned_cols=292 Identities=10% Similarity=0.008 Sum_probs=209.9
Q ss_pred hhhcCHHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH
Q 013010 107 KVTLGLNKATEFYHWVERFFDFFHNEM-TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV 185 (451)
Q Consensus 107 ~~~~~~~~A~~~f~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~ 185 (451)
...|+++.|.+.+....+ ..|+.. .+-....+..+.|+.+.|.+.+.+..+.... ......-.....+...|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~--~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN--DNILVEIARTRILLAQNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--CchHHHHHHHHHHHHCCCH
Confidence 346789999999988764 345433 3344456778889999999999998776422 2222333457778889999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH-HHHHH---HhcCCchhhh
Q 013010 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI-LISSY---CKYGMQTGCR 261 (451)
Q Consensus 186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~-li~~~---~~~g~~~~~~ 261 (451)
+.|.+.++.+.+.. +-+......+...+...|++++|.+++..+.+.+.. +...+.. -..++ ...+
T Consensus 170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~---~~~~~~~l~~~a~~~~l~~~------ 239 (409)
T TIGR00540 170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF---DDEEFADLEQKAEIGLLDEA------ 239 (409)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHHHH------
Confidence 99999999999865 336778889999999999999999999999998753 3333321 11121 2222
Q ss_pred HHHHHHHHHHHHHHHHHHhcC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhc
Q 013010 262 KAIRRRIWEANHLFRLMLFKG---FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT---YNSFIRYYSVV 335 (451)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~ 335 (451)
..+++.+.+..+.+.. .+.+...+-.+...+...|+.++|.+++++..+. .||... ...........
T Consensus 240 -----~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 240 -----MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred -----HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCC
Confidence 2223333444444331 1237788888999999999999999999999886 344432 12222233446
Q ss_pred CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHH
Q 013010 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415 (451)
Q Consensus 336 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 415 (451)
++.+.+.+.++...+.....|+.....++-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899999999888764222222556678888999999999999999655555679999999999999999999999888
Q ss_pred HHHHH
Q 013010 416 LRKRI 420 (451)
Q Consensus 416 ~~~~~ 420 (451)
+++..
T Consensus 393 ~~~~l 397 (409)
T TIGR00540 393 RQDSL 397 (409)
T ss_pred HHHHH
Confidence 88643
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.44 E-value=1.6e-09 Score=111.79 Aligned_cols=304 Identities=10% Similarity=0.036 Sum_probs=167.9
Q ss_pred hhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHH
Q 013010 107 KVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN 186 (451)
Q Consensus 107 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~ 186 (451)
...|..++|+..++.... ..+........+...+...|++++|.++++++.+.... +...+..++..+...++.+
T Consensus 79 ~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~---n~~~l~gLa~~y~~~~q~~ 153 (822)
T PRK14574 79 GWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT---NPDLISGMIMTQADAGRGG 153 (822)
T ss_pred HHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHhhcCCHH
Confidence 344677888888888761 11222333333456778889999999999999887633 4556777788888899999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH-
Q 013010 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR- 265 (451)
Q Consensus 187 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~- 265 (451)
+|++.++++... .|+...+-.++..+...++..+|++.++++.+.. |-+...+..++.++.+.|-..-+.+...
T Consensus 154 eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 154 VVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 999999988874 4666666555445545666666999999988875 2366677777777777775444433221
Q ss_pred ---------------------------------HH---HHHHHHHHHHHHhc-CCCCC-HhhH----HHHHHHHHhcCCH
Q 013010 266 ---------------------------------RR---IWEANHLFRLMLFK-GFVPD-VVAY----NCLIDGCCKTYRI 303 (451)
Q Consensus 266 ---------------------------------~~---~~~a~~~~~~m~~~-~~~~~-~~~~----~~li~~~~~~g~~ 303 (451)
++ .+.|+.-++.+... +-.|. ...| --.+.++...|++
T Consensus 229 ~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~ 308 (822)
T PRK14574 229 NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT 308 (822)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH
Confidence 01 11222222222221 11111 1111 1123344455555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCChhhHHHHHHHHHHcCCHHHHHH
Q 013010 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH----GVPTSSSYTPIIHALCEAGRVLEARD 379 (451)
Q Consensus 304 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~ 379 (451)
.++.+.|+.|...|.+.-..+-..+..+|...+++++|..++..+..... ..++......|..+|...+++++|..
T Consensus 309 ~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~ 388 (822)
T PRK14574 309 ADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ 388 (822)
T ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence 55555555555555432233444555555555555555555555543221 01222233455555555555555555
Q ss_pred HHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 380 FLAELVDGGS-----------VPR---EYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 380 l~~~m~~~g~-----------~p~---~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
+++.+.+.-- .|+ ...+..++..+...|++..|.+.++++.
T Consensus 389 ~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~ 443 (822)
T PRK14574 389 FAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS 443 (822)
T ss_pred HHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555554110 111 1223334455555555555555555554
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.43 E-value=1.8e-09 Score=112.90 Aligned_cols=297 Identities=11% Similarity=0.016 Sum_probs=200.1
Q ss_pred CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010 104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183 (451)
Q Consensus 104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g 183 (451)
..+...+++++|..+|+..... .+.+...+..+...+...|++++|...+++..+... .+.. +..+...+...|
T Consensus 57 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P---~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 57 VAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP---DKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHH-HHHHHHHHHHCC
Confidence 3466678899999999998753 344566777888889999999999999999988742 2455 888888899999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh-------------------------------
Q 013010 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL------------------------------- 232 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------------------------------- 232 (451)
+.++|+..++++.+.. +-+...+..+..++...+..+.|+..++....
T Consensus 131 ~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~ 209 (765)
T PRK10049 131 RHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERY 209 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHH
Confidence 9999999999998853 22455556667777777777766666654332
Q ss_pred ---------------CCCCCCCCHH-HHH----HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC-CCHhhHH
Q 013010 233 ---------------PGFRCPPDVY-TYT----ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PDVVAYN 291 (451)
Q Consensus 233 ---------------~g~~~~p~~~-~~~----~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~ 291 (451)
.--. .|+.. .+. ..+..+...| ++++|...|+.+.+.+-. |+. .--
T Consensus 210 ~~ad~Al~~~~~ll~~~~~-~p~~~~~~~~a~~d~l~~Ll~~g-----------~~~eA~~~~~~ll~~~~~~P~~-a~~ 276 (765)
T PRK10049 210 AIADRALAQYDALEALWHD-NPDATADYQRARIDRLGALLARD-----------RYKDVISEYQRLKAEGQIIPPW-AQR 276 (765)
T ss_pred HHHHHHHHHHHHHHhhccc-CCccchHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHhhccCCCCCHH-HHH
Confidence 1000 01110 000 0011223333 788899999888876522 322 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----------CCCCh
Q 013010 292 CLIDGCCKTYRIERALELFDDMNKKGCIP---NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH----------GVPTS 358 (451)
Q Consensus 292 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------~~p~~ 358 (451)
.+..+|...|++++|...|+.+.+..-.. .......+..++...|++++|.++++.+..... ..|+.
T Consensus 277 ~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 277 WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 24667888899999999988876542111 134456666778888888888888888876531 02231
Q ss_pred ---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 359 ---SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 359 ---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
..+..+...+...|+.++|.++++++.... +-+...+..+...+...|+++.|.+.+++.+.
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 234556667778888888888888877542 33466777777788888888888888777764
No 28
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=6e-13 Score=87.04 Aligned_cols=50 Identities=48% Similarity=0.814 Sum_probs=41.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334 (451)
Q Consensus 285 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 334 (451)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.41 E-value=2.6e-09 Score=112.46 Aligned_cols=289 Identities=13% Similarity=0.058 Sum_probs=212.0
Q ss_pred hcCHHHHHHHHHHHhh-cCCCCCCHHhHHHHHHHHHccCC---hhHHHHH----------------------HHHHHHcC
Q 013010 109 TLGLNKATEFYHWVER-FFDFFHNEMTCKEMGIVFARGNN---VKGLWDF----------------------LKDMSRRG 162 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~-~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~----------------------~~~m~~~~ 162 (451)
.|..++|..+|+.... ...-..+....+.++..|.+.+. ..++..+ .......-
T Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 4557888888887764 21122344556678888887766 3333222 11111111
Q ss_pred CCCCc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC
Q 013010 163 NGELV--TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240 (451)
Q Consensus 163 ~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~ 240 (451)
...+. +...|..+..++.. ++.++|...|.+.... .|+......+..++...|++++|...|+++.... |+
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~----p~ 541 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD----MS 541 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC----CC
Confidence 11122 56677888877776 8888999988887764 4665554444555568999999999999876542 55
Q ss_pred HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320 (451)
Q Consensus 241 ~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 320 (451)
...+..+...+.+.| +.++|...++...+.. +.+...+..+...+...|++++|...+++..+. .|
T Consensus 542 ~~a~~~la~all~~G-----------d~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P 607 (987)
T PRK09782 542 NEDLLAAANTAQAAG-----------NGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--AP 607 (987)
T ss_pred cHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CC
Confidence 556677788888999 8899999999888753 223333333334445569999999999998876 57
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 013010 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400 (451)
Q Consensus 321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 400 (451)
+...|..+...+.+.|+.++|...+++..... +-+...++.+-..+...|++++|.+.+++..+.. +-+...+..+.
T Consensus 608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA 684 (987)
T PRK09782 608 SANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLA 684 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 78889999999999999999999999999876 5667788888889999999999999999988753 23567888999
Q ss_pred HHHHhcCCCchHHHHHHHHHH
Q 013010 401 DALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 401 ~~~~~~g~~~~a~~~~~~~~~ 421 (451)
.++...|+++.|...+++.++
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999875
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=1.7e-10 Score=110.53 Aligned_cols=277 Identities=16% Similarity=0.088 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH-HHHHH
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV-NEALA 190 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~ 190 (451)
.++|+..|..++.+ ..-+......+..+|...+++++|.++|+.+.+...-...+..+|.+.+.-+-+.=.. -.|.+
T Consensus 335 ~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 335 CREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 68888888886653 3334466777888999999999999999999887654455778888887654321111 11222
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 013010 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270 (451)
Q Consensus 191 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~ 270 (451)
+.+.+ +-.+.+|.++.++|.-+++++.|++.|++..+.. +-..++|+.+-.-+.... .+|.
T Consensus 413 Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld---p~faYayTLlGhE~~~~e-----------e~d~ 473 (638)
T KOG1126|consen 413 LIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD---PRFAYAYTLLGHESIATE-----------EFDK 473 (638)
T ss_pred HHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC---CccchhhhhcCChhhhhH-----------HHHh
Confidence 32222 3467999999999999999999999999998765 227888888888777777 8999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHH---HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010 271 ANHLFRLMLFKGFVPDVVAYNCL---IDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMR 346 (451)
Q Consensus 271 a~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (451)
|...|+.... .|...||+. .-.|.+.++++.|+-.|+...+. .| +.+....+...+-+.|+.|+|+.+++
T Consensus 474 a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 474 AMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYE 547 (638)
T ss_pred HHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHH
Confidence 9999987764 477788775 45688999999999999998876 45 56667777888889999999999999
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCCchHHHHHHHH
Q 013010 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEEPSLLDDGLRKR 419 (451)
Q Consensus 347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~ 419 (451)
+...... -|+..--.-...+...+++++|+..++++++ +.|+ ...|..+...|.+-|+.+.|..-+--+
T Consensus 548 ~A~~ld~--kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 548 KAIHLDP--KNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHhcCC--CCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 9988763 4444444455667888999999999999987 4565 567888899999999999775544433
No 31
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=8.1e-13 Score=86.43 Aligned_cols=50 Identities=30% Similarity=0.626 Sum_probs=41.1
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405 (451)
Q Consensus 356 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 405 (451)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888764
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.38 E-value=4.8e-09 Score=108.23 Aligned_cols=291 Identities=11% Similarity=-0.005 Sum_probs=207.9
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCH--HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNE--MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g 183 (451)
..+.|+.+.|++.|+...+. .|+. ..+ .++..+...|+.++|...+++..... +........+...|...|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~---n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM---NISSRGLASAARAYRNEK 116 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC---CCCHHHHHHHHHHHHHcC
Confidence 34578889999999999853 4443 233 88888889999999999999988322 223333444466888899
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHH
Q 013010 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~ 263 (451)
++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+.... |+...+..++..+...+
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d----p~~~~~l~layL~~~~~-------- 183 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD----PTVQNYMTLSYLNRATD-------- 183 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC----cchHHHHHHHHHHHhcc--------
Confidence 9999999999999864 2346777788889999999999999999998775 77666644433333333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH---------------------------------
Q 013010 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF--------------------------------- 310 (451)
Q Consensus 264 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~--------------------------------- 310 (451)
+..+|++.++++.+.. +-+...+..++.++.+.|-...|.++.
T Consensus 184 ---~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 184 ---RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred ---hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 4545888888887652 223444455555555555444333333
Q ss_pred ---------------HHHHh-CCCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 013010 311 ---------------DDMNK-KGCIPNR-VTY----NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369 (451)
Q Consensus 311 ---------------~~m~~-~g~~p~~-~t~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 369 (451)
+.+.. .+-.|.. .-| --.+-++...|+.+++++.++.+...+...| ..+-..+.++|.
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P-~y~~~a~adayl 338 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP-DYARRWAASAYI 338 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC-HHHHHHHHHHHH
Confidence 22222 1112321 112 2345577889999999999999998885234 457788999999
Q ss_pred HcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 370 EAGRVLEARDFLAELVDGG-----SVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 370 ~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
..+.+++|..+|.++.... ..++......|.-++...|++++|..++.++.+
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 9999999999999997543 233455568899999999999999999999986
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=1.3e-09 Score=105.00 Aligned_cols=252 Identities=10% Similarity=-0.022 Sum_probs=199.2
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHH--HHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCK--EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g 183 (451)
....|+.++|.+.|..+.+ ..|+...+. .....+...|+++.|...++.+.+.... +...+..+...|.+.|
T Consensus 128 A~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~---~~~al~ll~~~~~~~g 201 (398)
T PRK10747 128 AQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR---HPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHH
Confidence 3557889999999999974 455554333 3356788999999999999999988733 6678999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 013010 184 LVNEALATFYRMKQFRCRPDV-------YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~ 256 (451)
++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+...- +.+......+...+...|
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~---~~~~~~~~~~A~~l~~~g- 277 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT---RHQVALQVAMAEHLIECD- 277 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH---hCCHHHHHHHHHHHHHCC-
Confidence 999999999999997754322 233444444445556677777777765432 357888899999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 013010 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVV 335 (451)
Q Consensus 257 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~ 335 (451)
+.++|.+++++..+. .||... .++.+.+..++.+++.+..+...+. .| |...+..+-..|.+.
T Consensus 278 ----------~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 278 ----------DHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred ----------CHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHC
Confidence 889999999888874 455422 2345556679999999999998876 45 566788889999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 336 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
+++++|.+.|+...+. .|+...|..+...+.+.|+.++|.+++++-..
T Consensus 342 ~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 342 GEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999985 59999999999999999999999999987653
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=3.1e-09 Score=93.48 Aligned_cols=295 Identities=13% Similarity=0.088 Sum_probs=213.4
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CccHHhHHHHHHHHHhcCCHHHH
Q 013010 110 LGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVLGEEGLVNEA 188 (451)
Q Consensus 110 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 188 (451)
...++|++.|-+|.+. -+-+..+--+|.+.|.+.|.++.|+++.+.+.++..-+ .--....-.|..-|...|-++.|
T Consensus 49 ~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 49 NQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred cCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3479999999999863 33455566678899999999999999999988863211 11223455677888999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH-HHHHHHhcCCchhhhHHHHHH
Q 013010 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI-LISSYCKYGMQTGCRKAIRRR 267 (451)
Q Consensus 189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~-li~~~~~~g~~~~~~~~~~~~ 267 (451)
+.+|..+.+.|. .-......|+..|-...+|++|.++-+++.+.+-. + |+. +...||.......+. .+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q--~----~~~eIAqfyCELAq~~~~~----~~ 195 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ--T----YRVEIAQFYCELAQQALAS----SD 195 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc--c----chhHHHHHHHHHHHHHhhh----hh
Confidence 999999998652 34667788999999999999999999999887632 2 222 233444433222222 28
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010 268 IWEANHLFRLMLFKGFVPDVVAYN-CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346 (451)
Q Consensus 268 ~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (451)
++.|..++.+..+.+ |+.+--+ .+-+.....|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+.
T Consensus 196 ~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 196 VDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred HHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888999998887653 3332223 3446778999999999999999998655567788999999999999999999999
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHhc
Q 013010 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP---SLLDDGLRKRIRDG 423 (451)
Q Consensus 347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~---~~a~~~~~~~~~~g 423 (451)
.+.+.. +....-..+-+......-.+.|..++.+-+.. .|+...+..|++.-...++. ..-...+++|+..-
T Consensus 274 ~~~~~~---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 274 RAMETN---TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHcc---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 988865 34444455555555555577777777666553 59999999999887655443 44445666666433
Q ss_pred h
Q 013010 424 I 424 (451)
Q Consensus 424 ~ 424 (451)
+
T Consensus 349 l 349 (389)
T COG2956 349 L 349 (389)
T ss_pred H
Confidence 3
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.36 E-value=3.9e-09 Score=111.13 Aligned_cols=260 Identities=12% Similarity=-0.011 Sum_probs=199.5
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+...|..+..++.. ++.++|...+.+..... | +......+...+...|++++|...|+++... +|+...+..+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l 548 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA 548 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 56778888888876 89999999888877764 2 3222333344456899999999999998664 4555667777
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 290 (451)
..++.+.|+.++|...+++..+.. +++...+..+.....+.| ++++|...+++..+. .|+...|
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~---P~~~~l~~~La~~l~~~G-----------r~~eAl~~~~~AL~l--~P~~~a~ 612 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRG---LGDNALYWWLHAQRYIPG-----------QPELALNDLTRSLNI--APSANAY 612 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHh--CCCHHHH
Confidence 888999999999999999998765 234444444444555668 999999999999865 5678889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 013010 291 NCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369 (451)
Q Consensus 291 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 369 (451)
..+..++.+.|+.++|...++...+. .| +...++.+-..+...|+.++|+..+++..+.. +-+...+..+-.++.
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~ 688 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 99999999999999999999998887 35 56777888889999999999999999999875 556778899999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCCchHHHHHHHH
Q 013010 370 EAGRVLEARDFLAELVDGGSVPRE-YTYKLVCDALNAAEEPSLLDDGLRKR 419 (451)
Q Consensus 370 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~ 419 (451)
..|++++|...+++..+.. |+. .+.-...+...+..+++.+.+.+...
T Consensus 689 ~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998743 543 33333444455555555444444433
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=6.3e-11 Score=116.41 Aligned_cols=264 Identities=11% Similarity=0.118 Sum_probs=175.4
Q ss_pred HHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010 118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197 (451)
Q Consensus 118 ~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 197 (451)
|+-.+... |+.|+..||.++|.-||..|+.+.|- +|.-|..+..+. +...++.++.+....++.+.+.
T Consensus 12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv--~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPV--REGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccc--cchhHHHHHhcccccccccCCC--------
Confidence 44445544 99999999999999999999999998 998888876543 6678999999999999887765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHh----hhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHH-----HH
Q 013010 198 FRCRPDVYAYNVVINALCRVGNFNK---ARFLLEQM----ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA-----IR 265 (451)
Q Consensus 198 ~g~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m----~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~-----~~ 265 (451)
.|...||..|+.+|...||+.. +.+.+... ...|+. .|.. -+-..+++ +..-. ..+... .+
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~-~fl~k~~c-~p~~l-pda~n~illlv~e 152 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPER-WFLMKIHC-CPHSL-PDAENAILLLVLE 152 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHH-HHHhhccc-Ccccc-hhHHHHHHHHHHH
Confidence 6899999999999999999755 32222221 223432 1111 11111121 11111 111111 12
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 013010 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345 (451)
Q Consensus 266 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 345 (451)
+-++.+.+++..+....- +. ++-.+++-+.. ......++......-.-.|+..+|.+++..-..+|+++.|..++
T Consensus 153 glwaqllkll~~~Pvsa~--~~-p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAW--NA-PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHhhCCcccc--cc-hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 244455555544332110 00 11112333222 23344455544443322589999999999999999999999999
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Q 013010 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409 (451)
Q Consensus 346 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 409 (451)
.+|++.|. +.+.+-|..|+-+ .++..-+..++..|.+.|+.|+..|+...+..+.+.|..
T Consensus 228 ~emke~gf-pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 228 YEMKEKGF-PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHHHHcCC-Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 99999998 6677777777655 888888899999999999999999998887777775543
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=4.6e-09 Score=93.32 Aligned_cols=197 Identities=14% Similarity=0.062 Sum_probs=94.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (451)
Q Consensus 171 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~ 250 (451)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+...
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~ 108 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHH
Confidence 34444445555555555555555544422 1223444444455555555555555555544432 1233444445555
Q ss_pred HHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 013010 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF-VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329 (451)
Q Consensus 251 ~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 329 (451)
+...| ++++|.+.+.+...... ......+..+...+...|++++|.+.+.+..+.. +.+...+..+.
T Consensus 109 ~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 176 (234)
T TIGR02521 109 LCQQG-----------KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELA 176 (234)
T ss_pred HHHcc-----------cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHH
Confidence 55555 45555555555443211 1122334444445555555555555555554432 11334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
..+...|++++|...+++..... ..+...+..+...+...|+.++|..+.+.+.
T Consensus 177 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 177 ELYYLRGQYKDARAYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555666555555555442 3344444455555555555555555555443
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.29 E-value=6e-09 Score=100.99 Aligned_cols=258 Identities=10% Similarity=-0.021 Sum_probs=186.0
Q ss_pred chhhhcCHHHHHHHHHHHhhcCCCCCCHH--hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc
Q 013010 105 PQKVTLGLNKATEFYHWVERFFDFFHNEM--TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE 182 (451)
Q Consensus 105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~ 182 (451)
.+...|+.++|.+.+....+. .|+.. .--.....+...|+++.|...++.+.+.... +..++..+...+...
T Consensus 127 aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~---~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 127 AAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR---HKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHH
Confidence 345568899999999998754 24432 3333577788899999999999999998633 556788999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHH---HhcCChHHHHHHHHHhhhCCC-CCCCCHHHHHHHHHHHHhcCCc
Q 013010 183 GLVNEALATFYRMKQFRCRPDVYAY-NVVINAL---CRVGNFNKARFLLEQMELPGF-RCPPDVYTYTILISSYCKYGMQ 257 (451)
Q Consensus 183 g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~---~~~g~~~~a~~~~~~m~~~g~-~~~p~~~~~~~li~~~~~~g~~ 257 (451)
|++++|.+.+..+.+.++. +...+ ..-..++ ...+..+...+.+..+.+... ..+.+...+..+...+...|
T Consensus 201 ~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g-- 277 (409)
T TIGR00540 201 GAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD-- 277 (409)
T ss_pred hhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC--
Confidence 9999999999999998754 33333 2222222 222233333334444443320 01137888999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHH
Q 013010 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA---YNCLIDGCCKTYRIERALELFDDMNKKGCIPNR---VTYNSFIRY 331 (451)
Q Consensus 258 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~ 331 (451)
+.++|.+++++..+. .||... ...........++.+.+.+.++...+. .|+. ....++-..
T Consensus 278 ---------~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 278 ---------DHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQL 344 (409)
T ss_pred ---------ChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHH
Confidence 899999999999875 344432 122223334567888899988887765 4543 455678888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 332 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
|.+.|++++|.+.|+....... .|+...+..+...+.+.|+.++|.+++++-.
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~-~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKE-QLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999995433333 6889889999999999999999999998754
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=5.9e-09 Score=92.58 Aligned_cols=201 Identities=14% Similarity=0.094 Sum_probs=165.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281 (451)
Q Consensus 202 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~ 281 (451)
.....+..+...+...|++++|...+++..+.. +.+...+..+...|...| ++++|.+.+++..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~ 94 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD---PDDYLAYLALALYYQQLG-----------ELEKAEDSFRRALTL 94 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhh
Confidence 346778888899999999999999999988764 346778888999999999 889999999988865
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhh
Q 013010 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360 (451)
Q Consensus 282 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~ 360 (451)
. +.+...+..+...+...|++++|.+.++........| ....+..+...|...|++++|...+++..+.. +.+...
T Consensus 95 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 171 (234)
T TIGR02521 95 N-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPES 171 (234)
T ss_pred C-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHH
Confidence 3 3355677888889999999999999999988753223 45567778888999999999999999998865 445678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 361 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
+..+...+...|++++|.+++++..+. ...+...+..+...+...|+.+.+......+.
T Consensus 172 ~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 172 LLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888999999999999999999999876 34466777788899999999998877766543
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=8.1e-09 Score=103.98 Aligned_cols=248 Identities=11% Similarity=0.059 Sum_probs=156.8
Q ss_pred hHHHHHHHHHHHcCCCCCccHHhHHHHHHHHH---------hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 013010 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG---------EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (451)
Q Consensus 149 ~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 219 (451)
++|..+|++..+.... +...|..+..++. ..+++++|...+++..+.+ +-+..++..+...+...|+
T Consensus 278 ~~A~~~~~~Al~ldP~---~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 278 QQALKLLTQCVNMSPN---SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 6777777777776422 3445555544332 2355788888888887753 2356777777777788888
Q ss_pred hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCH-hhHHHHHHHHH
Q 013010 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV-VAYNCLIDGCC 298 (451)
Q Consensus 220 ~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~ 298 (451)
+++|...|++..+.. |.+...+..+...+...| ++++|...+++..+. .|+. ..+..++..+.
T Consensus 354 ~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G-----------~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 354 YIVGSLLFKQANLLS---PISADIKYYYGWNLFMAG-----------QLEEALQTINECLKL--DPTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhc--CCCChhhHHHHHHHHH
Confidence 888888888887765 345667777888888888 888888888887765 3332 23333444566
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHH
Q 013010 299 KTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377 (451)
Q Consensus 299 ~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 377 (451)
..|++++|...+++..+.. .| +...+..+-.+|...|+.++|...+.++.... ..+....+.+...|+..| ++|
T Consensus 418 ~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~a 492 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQNS--ERA 492 (553)
T ss_pred hccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccH--HHH
Confidence 6788888888888876553 24 34456667777778888888888888775542 222333444555566666 477
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhch
Q 013010 378 RDFLAELVDG-GSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424 (451)
Q Consensus 378 ~~l~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~ 424 (451)
...++.+.+. ...+...-+..++ +.-.|+.+.+ ..++++.+.|-
T Consensus 493 ~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~-~~~~~~~~~~~ 537 (553)
T PRK12370 493 LPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAE-KMWNKFKNEDN 537 (553)
T ss_pred HHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHH-HHHHHhhccch
Confidence 7767666543 2233322333333 4444555533 44466665543
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.25 E-value=2.2e-08 Score=99.30 Aligned_cols=291 Identities=13% Similarity=0.072 Sum_probs=210.3
Q ss_pred hhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010 108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187 (451)
Q Consensus 108 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 187 (451)
..|+.++|.+++.++.++ .+.+...|..|...|-..|+.+++...+-.....+ | .|..-|..+-....+.|+++.
T Consensus 151 arg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p-~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--P-KDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--C-CChHHHHHHHHHHHhcccHHH
Confidence 348899999999999875 55677889999999999999999998885544443 3 255789999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHH----HHHHHHHhcCCchhhhHH
Q 013010 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT----ILISSYCKYGMQTGCRKA 263 (451)
Q Consensus 188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~----~li~~~~~~g~~~~~~~~ 263 (451)
|.-.|.+..+.. +++...+---...|-+.|+...|..-|.++..... +.|..-+- .++..+...+
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~er~~d~i~~~~~~~~~~~-------- 294 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDIERIEDLIRRVAHYFITHN-------- 294 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHHHHHHhh--------
Confidence 999999999864 34555555556778899999999999999987741 12322233 3344555555
Q ss_pred HHHHHHHHHHHHHHHHh-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------------------
Q 013010 264 IRRRIWEANHLFRLMLF-KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK-------------------------- 316 (451)
Q Consensus 264 ~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------------------- 316 (451)
+-+.|.+.++.... .+-..+...++.++..|.+...++.|......+...
T Consensus 295 ---~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 295 ---ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred ---HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 33566666655443 223445566777777777777777777666655541
Q ss_pred -----------------------------------CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChh
Q 013010 317 -----------------------------------GCIP--NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359 (451)
Q Consensus 317 -----------------------------------g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 359 (451)
.+.| +...|.-+..+|.+.|++++|+.+|..+..... .-+..
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~-~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG-YQNAF 450 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc-ccchh
Confidence 1111 233345577788888999999999998887654 45567
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
.|-.+..+|...|..++|.+.|...+.. .|+ ...--+|-..+.+.|+.++|.+.++.+.
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 8888888888899999999999888764 233 3344556667888899999988888865
No 42
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=1.1e-07 Score=86.42 Aligned_cols=288 Identities=10% Similarity=0.033 Sum_probs=221.3
Q ss_pred hhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010 108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187 (451)
Q Consensus 108 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 187 (451)
..|++.+|+.....-.+. +-.| ...|..-..+--+.|+.+.+-.++.+..+... +.+...+-+........|+++.
T Consensus 96 ~eG~~~qAEkl~~rnae~-~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~--~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEH-GEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAG--DDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred hcCcHHHHHHHHHHhhhc-Ccch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCC--CchHHHHHHHHHHHHhCCCchh
Confidence 367899999988876543 3222 33455555667788999999999999888632 3467777788888999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC-----HHHHHHHHHHHHhcCCchhhhH
Q 013010 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-----VYTYTILISSYCKYGMQTGCRK 262 (451)
Q Consensus 188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~-----~~~~~~li~~~~~~g~~~~~~~ 262 (451)
|..-++++.+.+ +.+.........+|.+.|++.....++..|.+.|.-.++. ..+|..+++-....+
T Consensus 172 A~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~------- 243 (400)
T COG3071 172 ARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN------- 243 (400)
T ss_pred HHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc-------
Confidence 999999998865 4567888999999999999999999999999998741111 135666666665554
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342 (451)
Q Consensus 263 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 342 (451)
..+.-...+++.. ...+-+...-.+++.-+..+|+.++|.++..+..+.+..|+ -...-.+.+.++...-+
T Consensus 244 ----~~~gL~~~W~~~p-r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~ 314 (400)
T COG3071 244 ----GSEGLKTWWKNQP-RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLI 314 (400)
T ss_pred ----cchHHHHHHHhcc-HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHH
Confidence 3333333444443 23455677778888899999999999999999998877666 22334556778888888
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
+..+...+.. +-++..+.+|-..|.+.+.+.+|.+.|+...+ ..|+..+|+.+.+++.+.|+...+.++.++..
T Consensus 315 k~~e~~l~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 315 KAAEKWLKQH--PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHhC--CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8888777655 34557888999999999999999999996665 56999999999999999999999988877655
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=7.9e-09 Score=104.04 Aligned_cols=214 Identities=12% Similarity=0.032 Sum_probs=152.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH
Q 013010 183 GLVNEALATFYRMKQFRCRPD-VYAYNVVINALCR---------VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252 (451)
Q Consensus 183 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~ 252 (451)
+..++|.+.|++..+. .|+ ...|..+..+|.. .+++++|...+++..+.. |-+..++..+...+.
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld---P~~~~a~~~lg~~~~ 349 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD---HNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHH
Confidence 4578999999998874 454 4555555444432 244788999999988775 347778888888888
Q ss_pred hcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 013010 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRY 331 (451)
Q Consensus 253 ~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~ 331 (451)
..| ++++|...|++..+.+ +.+...+..+...+...|++++|...++...+.. |+ ...+..+...
T Consensus 350 ~~g-----------~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~ 415 (553)
T PRK12370 350 IHS-----------EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWI 415 (553)
T ss_pred Hcc-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHH
Confidence 888 8889999999888763 3345667778888889999999999999988763 43 2333344445
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCC
Q 013010 332 YSVVNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEEP 409 (451)
Q Consensus 332 ~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~ 409 (451)
+...|++++|...+++..... .| +...+..+..++...|+.++|...+.++... .|+ ....+.+...|+..|+
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~- 490 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSE- 490 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHH-
Confidence 666889999999999887654 34 3445667777788899999999999887543 233 3445556666777774
Q ss_pred chHHHHHHHHHH
Q 013010 410 SLLDDGLRKRIR 421 (451)
Q Consensus 410 ~~a~~~~~~~~~ 421 (451)
.+...++++.+
T Consensus 491 -~a~~~l~~ll~ 501 (553)
T PRK12370 491 -RALPTIREFLE 501 (553)
T ss_pred -HHHHHHHHHHH
Confidence 56666666553
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4.6e-08 Score=90.22 Aligned_cols=284 Identities=11% Similarity=0.055 Sum_probs=203.9
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH---
Q 013010 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE--- 187 (451)
Q Consensus 111 ~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~--- 187 (451)
..+++..-.+..... |++.+...-+....+.-...++++|+.+|+++.+..+-...+..+|+.++ |.++.+-.-
T Consensus 242 q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~L 318 (559)
T KOG1155|consen 242 QHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHH
Confidence 345555555555443 56555555555555566678888888888888887544444677777776 444332221
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 013010 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267 (451)
Q Consensus 188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~ 267 (451)
|..++.- . +--..|+.++.+-|.-.++.++|...|++..+.+ |-....|+.+-+-|.... +
T Consensus 319 A~~v~~i---d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---p~~~~aWTLmGHEyvEmK-----------N 379 (559)
T KOG1155|consen 319 AQNVSNI---D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN---PKYLSAWTLMGHEYVEMK-----------N 379 (559)
T ss_pred HHHHHHh---c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC---cchhHHHHHhhHHHHHhc-----------c
Confidence 2222221 1 2345778888888888889999999999988776 246678888888888888 7
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMR 346 (451)
Q Consensus 268 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (451)
...|.+-++...+-+ +.|-..|-.|-.+|.-.+...=|+-.|++...- +| |...|.+|-++|.+.++.++|++.|.
T Consensus 380 t~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 380 THAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred cHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 788888888887653 557788888888888888888888888887765 55 78899999999999999999999999
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD----GGSVPR--EYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
.....+ ..+...+..|.+.|-+.++.++|...|..-++ .|..-+ .....-|..-+.+.+++++|........
T Consensus 457 rai~~~--dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 457 RAILLG--DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHhcc--ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 988876 45678888999999999999999888876654 233322 2333346677888899988866555444
Q ss_pred H
Q 013010 421 R 421 (451)
Q Consensus 421 ~ 421 (451)
+
T Consensus 535 ~ 535 (559)
T KOG1155|consen 535 K 535 (559)
T ss_pred c
Confidence 3
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.9e-08 Score=88.60 Aligned_cols=265 Identities=12% Similarity=0.085 Sum_probs=199.2
Q ss_pred cCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHH--hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHH
Q 013010 101 AYRDPQKVTLGLNKATEFYHWVERFFDFFHNEM--TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV 178 (451)
Q Consensus 101 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~ 178 (451)
+.++.+++.|.+++|+.+-..+.+.++.+.+.. ..-.|..-|...|-+|.|+.+|..+.+.+ ..-......|+..
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~---efa~~AlqqLl~I 150 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG---EFAEGALQQLLNI 150 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch---hhhHHHHHHHHHH
Confidence 345789999999999999999987766655433 34456777889999999999999998865 2245568899999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc
Q 013010 179 LGEEGLVNEALATFYRMKQFRCRPD----VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (451)
Q Consensus 179 ~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~ 254 (451)
|-...+|++|+++-+++.+.+-++. ...|.-+...+....+++.|..++.+..+..- -.+.+--.+-+.+...
T Consensus 151 YQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~---~cvRAsi~lG~v~~~~ 227 (389)
T COG2956 151 YQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK---KCVRASIILGRVELAK 227 (389)
T ss_pred HHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc---cceehhhhhhHHHHhc
Confidence 9999999999999999988654332 23344555555667889999999999887762 2333444556677788
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334 (451)
Q Consensus 255 g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 334 (451)
| +++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+.... ...-..+-..-..
T Consensus 228 g-----------~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g--~~~~l~l~~lie~ 294 (389)
T COG2956 228 G-----------DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG--ADAELMLADLIEL 294 (389)
T ss_pred c-----------chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC--ccHHHHHHHHHHH
Confidence 8 99999999999998865556678899999999999999999999998887433 3333444444444
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHhC
Q 013010 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA---GRVLEARDFLAELVDG 387 (451)
Q Consensus 335 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~ 387 (451)
....+.|...+.+-... +|+...+..+|+.-... |...+-..++..|+..
T Consensus 295 ~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 295 QEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred hhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 55677777777665554 69999999999875433 4466667777788744
No 46
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=1.3e-08 Score=98.34 Aligned_cols=242 Identities=17% Similarity=0.130 Sum_probs=173.1
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHc-----CCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C--
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRR-----GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF-----R-- 199 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-- 199 (451)
..++..+...|...|+++.|..++....+. |.....=....+.+...|...+++++|..+|+++..- |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 446666899999999999999999877654 2222122233455667888999999999999998762 2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCCCHH-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHH
Q 013010 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVY-TYTILISSYCKYGMQTGCRKAIRRRIWEANH 273 (451)
Q Consensus 200 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~p~~~-~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~ 273 (451)
.+.-..+++.|-.+|++.|++++|...+++..+ .|.. .|.+. .++.+...++..+ ++++|..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-~~~v~~~l~~~~~~~~~~~-----------~~Eea~~ 346 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-HPEVAAQLSELAAILQSMN-----------EYEEAKK 346 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHhc-----------chhHHHH
Confidence 222356678888899999999988887766532 1221 24443 3556677777777 6666666
Q ss_pred HHHHHHhc---CCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHHhcCCHH
Q 013010 274 LFRLMLFK---GFVP----DVVAYNCLIDGCCKTYRIERALELFDDMNKK-----G-CIP-NRVTYNSFIRYYSVVNEID 339 (451)
Q Consensus 274 ~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p-~~~t~~~li~~~~~~g~~~ 339 (451)
+++...+. -..+ -..+++.|-..|.+.|++++|.+++++.... | ..+ ....++.|-..|.+.+...
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence 66544321 1112 2467999999999999999999999987643 1 122 3566788888999999999
Q ss_pred HHHHHHHHHH----hcCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 340 KAIEMMRKMQ----NLNHGVPT-SSSYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 340 ~A~~~~~~m~----~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
+|.++|.+.. ..|...|+ ..+|..|...|...|++++|.++.+...
T Consensus 427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999988643 33322333 4589999999999999999999988776
No 47
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=1.4e-08 Score=98.08 Aligned_cols=254 Identities=17% Similarity=0.149 Sum_probs=183.4
Q ss_pred CCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CCCHHH-HHHHHHHHHhcCChHHHHHHHHHhhh--
Q 013010 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF-----RC-RPDVYA-YNVVINALCRVGNFNKARFLLEQMEL-- 232 (451)
Q Consensus 162 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~-- 232 (451)
+...+.-..+...|...|...|++++|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++..
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3333334456777999999999999999999887663 21 233333 34467788899999999999998854
Q ss_pred ---CCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCCHHHHHH
Q 013010 233 ---PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV-VAYNCLIDGCCKTYRIERALE 308 (451)
Q Consensus 233 ---~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~ 308 (451)
.|-.++.-..+++.|-..|++.|+++.+.. -.+.|.++++.... ...|.+ ..++.+...|+..+++++|..
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~----~~e~Al~I~~~~~~-~~~~~v~~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEE----YCERALEIYEKLLG-ASHPEVAAQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHH----HHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 243333445678888889999996666655 55666666666221 123333 346677778889999999999
Q ss_pred HHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---C---CCChhhHHHHHHHHHHcCCHH
Q 013010 309 LFDDMNKK---GCIP----NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH---G---VPTSSSYTPIIHALCEAGRVL 375 (451)
Q Consensus 309 ~~~~m~~~---g~~p----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~---~p~~~~~~~li~~~~~~g~~~ 375 (451)
+++...+. -..+ -..+++.|-..|...|++++|.+++++..+... . .-....++.|-..|.+.+++.
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence 98875432 1122 357889999999999999999999998765431 1 122456788888999999999
Q ss_pred HHHHHHHHHH----hCCCC-CC-HHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 376 EARDFLAELV----DGGSV-PR-EYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 376 ~A~~l~~~m~----~~g~~-p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
+|.++|.+-. ..|.. |+ ..+|..|...|.+.|+++.|.++.+..+
T Consensus 427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999987654 33322 23 5789999999999999999988888776
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3e-07 Score=84.97 Aligned_cols=318 Identities=13% Similarity=0.061 Sum_probs=221.5
Q ss_pred CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcC-------------CC-----------CCccHHhHH--HHHHHHH
Q 013010 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-------------NG-----------ELVTTSSVT--CLIKVLG 180 (451)
Q Consensus 127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-------------~~-----------~~~~~~~~~--~li~~~~ 180 (451)
+...|...+-.....+-+.|....|.+.|......- .. .+.+..-.. -+..+|-
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 344455555555556677788888888876665531 00 000000000 1223444
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC----
Q 013010 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM---- 256 (451)
Q Consensus 181 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~---- 256 (451)
...+.+++.+=.+.+.+.|+.-+...-+....+.....++|+|+.+|+++.+...----|..+|+.++-.-.....
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 4557777888888888888765555555555566678899999999999988741101266777766543222110
Q ss_pred -----------chhhh-----HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010 257 -----------QTGCR-----KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320 (451)
Q Consensus 257 -----------~~~~~-----~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 320 (451)
++.|. -+++++.++|...|++..+.+ +-....|+.+-.-|....+...|.+-++...+.. +.
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~ 396 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PR 396 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-ch
Confidence 11110 123468899999999988753 2345677878888999999999999999998873 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 013010 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC 400 (451)
Q Consensus 321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 400 (451)
|-..|-.|-++|.-.+...=|+-.|++..+.. +-|...|.+|-..|.+.++.++|.+.|......|-. +...|..|.
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~La 473 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLA 473 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHH
Confidence 88999999999999999999999999998865 678999999999999999999999999999987644 667899999
Q ss_pred HHHHhcCCCchHHHHHHHHHHhchHH-HH-HHhhchhcccchhhhhcccCCC
Q 013010 401 DALNAAEEPSLLDDGLRKRIRDGIEY-RF-RQVMKVKPIMKHKELLKCGEID 450 (451)
Q Consensus 401 ~~~~~~g~~~~a~~~~~~~~~~g~~~-~~-~~~~~~~~~~~~~~~~k~g~~~ 450 (451)
+.+-+-++.++|...+.+.++.-... .. +...+.+..+ ...+.|+++.+
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fL-A~~f~k~~~~~ 524 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFL-AEYFKKMKDFD 524 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH-HHHHHhhcchH
Confidence 99999999999999999888533110 01 1122222333 35566777654
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=6e-08 Score=89.14 Aligned_cols=290 Identities=12% Similarity=0.005 Sum_probs=203.0
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHH-HHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKE-MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL 184 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~ 184 (451)
+.+.++++.|++++..+.++-+-..+...-|. .+..+.-..++..|.+.-+...... ..+......--+....+|+
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d---ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID---RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc---ccCHHHhhcCCceeeecCc
Confidence 45577888888888887765222222222221 1222222347777777776655443 1122222222233345799
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHH
Q 013010 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~ 264 (451)
+++|.+.|++....+-.-....||+=+ .+-..|++++|++.|-.+...- .-+..+...+.+.|-...
T Consensus 506 ~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il---~nn~evl~qianiye~le--------- 572 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL---LNNAEVLVQIANIYELLE--------- 572 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhh---------
Confidence 999999999998754333344455433 3567899999999998876432 246777777888887766
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013010 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344 (451)
Q Consensus 265 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 344 (451)
+..+|.+++-+... -++-|....+.|...|-+.|+-..|++.+-+--.- ++.+..|...|-..|....-+++|+.+
T Consensus 573 --d~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 573 --DPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred --CHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 67788888765543 24557788999999999999999998876553322 344788889999999999999999999
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHH-HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 345 MRKMQNLNHGVPTSSSYTPIIHAL-CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 345 ~~~m~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
|++..-. .|+..-|..+|..| .+.|++.+|+++|+.... .++-|.....-|++.+...|..+ +.+.-++..
T Consensus 649 ~ekaali---qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl~d-~key~~kle 720 (840)
T KOG2003|consen 649 FEKAALI---QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLKD-AKEYADKLE 720 (840)
T ss_pred HHHHHhc---CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccchh-HHHHHHHHH
Confidence 9987542 79999999998765 567999999999998754 47778889999999999998776 666655554
No 50
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=2.4e-07 Score=90.77 Aligned_cols=288 Identities=15% Similarity=0.107 Sum_probs=207.6
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc---
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE--- 182 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~--- 182 (451)
....|+.++|++.++.-.. .+......+......+.+.|+.++|..++..+.+++.. +..-|..+..+.+-.
T Consensus 14 l~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd---n~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD---NYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHhhhccc
Confidence 3456889999999988653 34444566777888999999999999999999999733 554566666666332
Q ss_pred --CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchh
Q 013010 183 --GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF-NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259 (451)
Q Consensus 183 --g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~ 259 (451)
.+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|+ |+ +|+.|-..|....
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv---Ps--lF~~lk~Ly~d~~---- 157 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV---PS--LFSNLKPLYKDPE---- 157 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC---ch--HHHHHHHHHcChh----
Confidence 35788899999987743 5444443333223322233 345666677788885 43 5677777676544
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc----C----------CCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H
Q 013010 260 CRKAIRRRIWEANHLFRLMLFK----G----------FVPDV--VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-R 322 (451)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~ 322 (451)
+..-..+++...... + -.|+. .++..+...|-..|++++|.+.+++..+. .|+ +
T Consensus 158 -------K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ 228 (517)
T PF12569_consen 158 -------KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLV 228 (517)
T ss_pred -------HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcH
Confidence 444444555444321 1 12333 34566677788999999999999998887 465 7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH------
Q 013010 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY------ 396 (451)
Q Consensus 323 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~------ 396 (451)
..|..-...|-+.|++++|.+.++..+... .-|...=+-.+..+.++|++++|.+++...-..+..|-...+
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 788888899999999999999999999988 578888889999999999999999999988876654433221
Q ss_pred --HHHHHHHHhcCCCchHHHHHHHHH
Q 013010 397 --KLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 397 --~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
.-...+|.+.|++..|...++...
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 445788999999998887777654
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=2.1e-08 Score=96.47 Aligned_cols=264 Identities=14% Similarity=0.066 Sum_probs=196.9
Q ss_pred CCchhhhcCHHHHHHHHHHHhhcCCC-CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh
Q 013010 103 RDPQKVTLGLNKATEFYHWVERFFDF-FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE 181 (451)
Q Consensus 103 ~~~~~~~~~~~~A~~~f~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~ 181 (451)
+.+|-..++.++|..+|+.+.+.... ..+..+|.+.+--+-+ .-+.--+-+++.+.. +.+..+|.++-++|.-
T Consensus 360 GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~Laq~Li~~~---~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 360 GRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYLAQDLIDTD---PNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHHHHHHHhhC---CCCcHHHHHhcchhhh
Confidence 34465677789999999999875332 2356677766644332 222222223344433 2256789999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhh
Q 013010 182 EGLVNEALATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260 (451)
Q Consensus 182 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~ 260 (451)
.++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|....... +-+-.+|.-|.-.|.+.+
T Consensus 434 Qkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~---~rhYnAwYGlG~vy~Kqe----- 503 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD---PRHYNAWYGLGTVYLKQE----- 503 (638)
T ss_pred hhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC---chhhHHHHhhhhheeccc-----
Confidence 99999999999999984 45 68999999888999999999999999877443 124455666777899999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 013010 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK 340 (451)
Q Consensus 261 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 340 (451)
+++.|+-.|+...+-+ +-+.+....+...+-+.|+.|+|++++++.....-+ |+.+--.-...+...++.++
T Consensus 504 ------k~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 504 ------KLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred ------hhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHH
Confidence 9999999999888653 335667777778888999999999999998876422 44444444566677899999
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 013010 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392 (451)
Q Consensus 341 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 392 (451)
|+..++++++.- +-+...|..+...|.+.|+.+.|+.-|.-+.+..-++.
T Consensus 576 al~~LEeLk~~v--P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 576 ALQELEELKELV--PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHHHhC--cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 999999999853 34556777888899999999999998888876554443
No 52
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.09 E-value=2.9e-07 Score=91.57 Aligned_cols=321 Identities=14% Similarity=0.101 Sum_probs=227.1
Q ss_pred cccCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHH
Q 013010 99 PAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV 178 (451)
Q Consensus 99 ~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~ 178 (451)
+...+..|...|+..+++.++-... +-.+.|...|..+.....+.|+++.|.-.|.+..+.... +...+--=+..
T Consensus 176 y~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~---n~~~~~ers~L 250 (895)
T KOG2076|consen 176 YYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS---NWELIYERSSL 250 (895)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc---chHHHHHHHHH
Confidence 4444566888899999999855544 245557788999999999999999999999999988632 44444455677
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc
Q 013010 179 LGEEGLVNEALATFYRMKQFRCRPDVYAY----NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (451)
Q Consensus 179 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~ 254 (451)
|-+.|+...|..-|.++.+..-+.|..-+ -.++..+...++-+.|.+.++.....+.. ..+...+++++..|.+.
T Consensus 251 ~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~-~~~~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 251 YQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD-EASLEDLNILAELFLKN 329 (895)
T ss_pred HHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc-cccccHHHHHHHHHHHh
Confidence 88899999999999999885422222222 23455566667778888888777663221 23444555666666555
Q ss_pred CCchhhhHHHH--------------------------------------------------HHHHHHHHHHHHHHhcCC-
Q 013010 255 GMQTGCRKAIR--------------------------------------------------RRIWEANHLFRLMLFKGF- 283 (451)
Q Consensus 255 g~~~~~~~~~~--------------------------------------------------~~~~~a~~~~~~m~~~~~- 283 (451)
...+.+...+. +..+....+.....+..+
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~ 409 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW 409 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC
Confidence 53333322221 011222223333333332
Q ss_pred -CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHH
Q 013010 284 -VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362 (451)
Q Consensus 284 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 362 (451)
.-+...|--+..+|...|++.+|..+|..+......-+...|-.+-.+|...|..+.|.+.|+...... +-+...-.
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri 487 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARI 487 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhh
Confidence 224556778889999999999999999999987555567889999999999999999999999999865 34445555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHH
Q 013010 363 PIIHALCEAGRVLEARDFLAELV--------DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYR 427 (451)
Q Consensus 363 ~li~~~~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~ 427 (451)
.|-..+-+.|+.++|.+.+..+. ..+..|+....-...+.+...|+.+........++...+.-+
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~ 560 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKR 560 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 66677899999999999999854 345677777777888899999999988888888886555444
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.02 E-value=1.4e-08 Score=100.40 Aligned_cols=242 Identities=16% Similarity=0.118 Sum_probs=169.5
Q ss_pred HHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 013010 153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (451)
Q Consensus 153 ~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 232 (451)
.++..+...|+.| +..||..+|.-||..|+++.|- +|.-|.-...+.+...++.++.+...+++.+.+.
T Consensus 11 nfla~~e~~gi~P--nRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILP--NRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred hHHHHHHHhcCCC--chhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------
Confidence 4566777888876 7789999999999999999998 9999988888888999999999999999877765
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH----hcCCCCCHhhH--------------HHHH
Q 013010 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML----FKGFVPDVVAY--------------NCLI 294 (451)
Q Consensus 233 ~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~--------------~~li 294 (451)
. |...||++|..+|...|+.. .++..++.+.... ..|+-.....+ ...+
T Consensus 80 ---e--p~aDtyt~Ll~ayr~hGDli--------~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~i 146 (1088)
T KOG4318|consen 80 ---E--PLADTYTNLLKAYRIHGDLI--------LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAI 146 (1088)
T ss_pred ---C--CchhHHHHHHHHHHhccchH--------HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHH
Confidence 2 78889999999999999765 3444444332222 22321111111 2233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 013010 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374 (451)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 374 (451)
.-....|-++.+.+++..+-.... ..++..+++-+.... .-..++.+..+. ....|+..+|.++++.-.-+|+.
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~---~~p~~vfLrqnv~~n--tpvekLl~~cks-l~e~~~s~~l~a~l~~alaag~~ 220 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAW---NAPFQVFLRQNVVDN--TPVEKLLNMCKS-LVEAPTSETLHAVLKRALAAGDV 220 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccc---cchHHHHHHHhccCC--chHHHHHHHHHH-hhcCCChHHHHHHHHHHHhcCch
Confidence 333444555555555544422110 011112344333322 223344443333 22269999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHH
Q 013010 375 LEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYR 427 (451)
Q Consensus 375 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~ 427 (451)
+.|..++.+|.+.|+..+.+-|-.|+-+ .++...+..+++.|-..|+.|.
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~ 270 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPG 270 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999988888766 8888888888888889988765
No 54
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=5.6e-07 Score=88.21 Aligned_cols=259 Identities=16% Similarity=0.138 Sum_probs=186.4
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhc
Q 013010 139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV-VINALCRV 217 (451)
Q Consensus 139 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~ 217 (451)
...+...|++++|++.++.-...-+. ...........+.+.|+.++|..+|..+.+.+ |+-..|-. +..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~D---k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILD---KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence 34567889999999999876555322 34566778889999999999999999999976 66665554 44444222
Q ss_pred -----CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHH-HHHHHHHHHHhcCCCCCHhhHH
Q 013010 218 -----GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EANHLFRLMLFKGFVPDVVAYN 291 (451)
Q Consensus 218 -----g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~ 291 (451)
.+.+....+|+++...- |...+...+.-.+.. |+ .+. .+..++..+...|++ .+|+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y----p~s~~~~rl~L~~~~-g~----------~F~~~~~~yl~~~l~KgvP---slF~ 147 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY----PRSDAPRRLPLDFLE-GD----------EFKERLDEYLRPQLRKGVP---SLFS 147 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC----ccccchhHhhcccCC-HH----------HHHHHHHHHHHHHHhcCCc---hHHH
Confidence 25677888899887664 443333333222222 21 333 455666777778854 4566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 013010 292 CLIDGCCKTYRIERALELFDDMNKK----G----------CIPNRV--TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355 (451)
Q Consensus 292 ~li~~~~~~g~~~~a~~~~~~m~~~----g----------~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 355 (451)
.|-..|......+-..+++...... | -.|+.. ++..+...|-..|++++|++++++..++. +
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--P 225 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--P 225 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--C
Confidence 6777777666666666666665432 1 134443 44566778889999999999999999875 3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423 (451)
Q Consensus 356 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g 423 (451)
..+..|..-.+.|-+.|++.+|.+.++...+... -|...-+-....+.++|+.++|.+.+....+.+
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 4467888888999999999999999999887654 377888888999999999999999999888766
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.99 E-value=2.8e-06 Score=77.39 Aligned_cols=256 Identities=11% Similarity=0.031 Sum_probs=202.2
Q ss_pred chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC
Q 013010 105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL 184 (451)
Q Consensus 105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~ 184 (451)
+....|+.++|-.+..+..+. --.++...+-+........|+++.|..-+.++.+.+.. +..+......+|.+.|+
T Consensus 127 AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr---~~~vlrLa~r~y~~~g~ 202 (400)
T COG3071 127 AAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR---HPEVLRLALRAYIRLGA 202 (400)
T ss_pred HHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC---ChHHHHHHHHHHHHhcc
Confidence 355578888999988888754 22445666777788889999999999999999988633 56689999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCc
Q 013010 185 VNEALATFYRMKQFRCRPDV-------YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~ 257 (451)
+.....++..|.+.|.--|. .+|+.++.-....+..+.-...+++....- .-+...-.+++.-+.+.|
T Consensus 203 ~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l---r~~p~l~~~~a~~li~l~-- 277 (400)
T COG3071 203 WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL---RNDPELVVAYAERLIRLG-- 277 (400)
T ss_pred HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh---hcChhHHHHHHHHHHHcC--
Confidence 99999999999999865543 567888887777777777677777765442 245667778889999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC
Q 013010 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK-KGCIPNRVTYNSFIRYYSVVN 336 (451)
Q Consensus 258 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g 336 (451)
+.++|.++..+..+++..|+. ...-.+.+-++.+.-.+..+.-.+ .+.. +..+..|-..|.+.+
T Consensus 278 ---------~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~ 342 (400)
T COG3071 278 ---------DHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNK 342 (400)
T ss_pred ---------ChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhh
Confidence 889999999998888766652 223345667777777777766443 4444 477888888999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010 337 EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 337 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
.+.+|.+.|+...+. .|+..+|+.+-++|.+.|+..+|.+..++-...
T Consensus 343 ~w~kA~~~leaAl~~---~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 343 LWGKASEALEAALKL---RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHHHhc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999977664 699999999999999999999999999887643
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.93 E-value=2e-06 Score=79.51 Aligned_cols=226 Identities=13% Similarity=0.025 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHhhcCCCCCC--HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010 111 GLNKATEFYHWVERFFDFFHN--EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188 (451)
Q Consensus 111 ~~~~A~~~f~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 188 (451)
..+.++.-+..+.......|+ ...|..+...+.+.|+.++|...|++..+.... +...|+.+...+...|++++|
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHH
Confidence 356667766666643223332 345777777888888888888888888776532 566788888888888888888
Q ss_pred HHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 013010 189 LATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267 (451)
Q Consensus 189 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~ 267 (451)
.+.|+...+. .| +..+|..+..++...|++++|.+.|+...+.. |+..........+...+ +
T Consensus 118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~----P~~~~~~~~~~l~~~~~-----------~ 180 (296)
T PRK11189 118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD----PNDPYRALWLYLAESKL-----------D 180 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHccC-----------C
Confidence 8888888764 34 36677777777888888888888888877664 43221111111223334 6
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHhcCCHHHH
Q 013010 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK---GC--IP-NRVTYNSFIRYYSVVNEIDKA 341 (451)
Q Consensus 268 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~--~p-~~~t~~~li~~~~~~g~~~~A 341 (451)
.++|...|.+.... ..++...+ . ......|+...+ +.+..+.+. .. .| ...+|..+-..|.+.|++++|
T Consensus 181 ~~~A~~~l~~~~~~-~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 181 PKQAKENLKQRYEK-LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred HHHHHHHHHHHHhh-CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 77888888654432 12332211 2 222334555443 344444322 11 11 234677777777778888888
Q ss_pred HHHHHHHHhcCCCCCChhhHHH
Q 013010 342 IEMMRKMQNLNHGVPTSSSYTP 363 (451)
Q Consensus 342 ~~~~~~m~~~~~~~p~~~~~~~ 363 (451)
...|++..+.+ +||-.-+..
T Consensus 256 ~~~~~~Al~~~--~~~~~e~~~ 275 (296)
T PRK11189 256 AALFKLALANN--VYNFVEHRY 275 (296)
T ss_pred HHHHHHHHHhC--CchHHHHHH
Confidence 88887777655 445444443
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.91 E-value=2.7e-06 Score=78.65 Aligned_cols=224 Identities=13% Similarity=0.033 Sum_probs=156.8
Q ss_pred HccCChhHHHHHHHHHHHcCC-CCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 013010 143 ARGNNVKGLWDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221 (451)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 221 (451)
...+..+.+..-+.++..... .+......|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 334566778888888776542 222235568888888999999999999999998854 335789999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 013010 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301 (451)
Q Consensus 222 ~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 301 (451)
+|...|+...+.. |-+..+|..+...+...| ++++|.+.|+...+. .|+..........+...+
T Consensus 116 ~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~g-----------~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~ 179 (296)
T PRK11189 116 AAYEAFDSVLELD---PTYNYAYLNRGIALYYGG-----------RYELAQDDLLAFYQD--DPNDPYRALWLYLAESKL 179 (296)
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccC
Confidence 9999999998765 235678888888899999 899999999988865 454332222223344567
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CCChhhHHHHHHHHHHcCCHHH
Q 013010 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-----VPTSSSYTPIIHALCEAGRVLE 376 (451)
Q Consensus 302 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~p~~~~~~~li~~~~~~g~~~~ 376 (451)
+.++|.+.+....... .|+...+ .+ .+...|+.+.+ +.+..+.+.... ......|..+-..+.+.|++++
T Consensus 180 ~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~ 254 (296)
T PRK11189 180 DPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDE 254 (296)
T ss_pred CHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 8999999997755332 3332222 22 22335555444 345555432110 1234578888899999999999
Q ss_pred HHHHHHHHHhCC
Q 013010 377 ARDFLAELVDGG 388 (451)
Q Consensus 377 A~~l~~~m~~~g 388 (451)
|...|++..+.+
T Consensus 255 A~~~~~~Al~~~ 266 (296)
T PRK11189 255 AAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHhC
Confidence 999999998765
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=1.8e-07 Score=82.76 Aligned_cols=227 Identities=12% Similarity=0.040 Sum_probs=145.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHH-HHHHHH
Q 013010 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT-ILISSY 251 (451)
Q Consensus 173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~-~li~~~ 251 (451)
+.+-++|.+.|-+.+|.+.|+...+. .|-+.||-.|-++|.+..+.+.|+.++.+-.+.- |-.+||. -+.+.+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f----P~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF----PFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC----CchhhhhhhhHHHH
Confidence 45667777777777777777766653 4566677777777777777777777777666543 4444443 345555
Q ss_pred HhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013010 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331 (451)
Q Consensus 252 ~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 331 (451)
-..+ +.++|.++++...+.. +.++....++..+|.-.++++-|...|+.+.+.|+. ++..|+.+--+
T Consensus 301 eam~-----------~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLC 367 (478)
T KOG1129|consen 301 EAME-----------QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLC 367 (478)
T ss_pred HHHH-----------hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHH
Confidence 5555 6677777777766542 335555566666677777777777777777777764 66777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Q 013010 332 YSVVNEIDKAIEMMRKMQNLNHGVPT--SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409 (451)
Q Consensus 332 ~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 409 (451)
|.-.+++|-++.-|.+....-. .|+ ...|-.+-......|++.-|.+.|+-....+- -....++.|.-.-.+.|+.
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat-~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTAT-QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhcc-CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCch
Confidence 7777777777777776655432 233 23555555556667777777777766554432 2345666666666777777
Q ss_pred chHHHHHHHHH
Q 013010 410 SLLDDGLRKRI 420 (451)
Q Consensus 410 ~~a~~~~~~~~ 420 (451)
+.|...+....
T Consensus 446 ~~Arsll~~A~ 456 (478)
T KOG1129|consen 446 LGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHHhh
Confidence 77766665444
No 59
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=1.3e-05 Score=74.62 Aligned_cols=117 Identities=12% Similarity=0.124 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 013010 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380 (451)
Q Consensus 301 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 380 (451)
.++..|.+++... -|.-|-..+|...|..=.+.+++|.+..+++...+-+ +-+..+|......=...|+.+.|..+
T Consensus 418 ~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 418 LNLTGARKILGNA--IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred cccHHHHHHHHHH--hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444444432 2446677777777777777778888888888877755 45666776666666667888888888
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 381 LAELVDGG-SVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 381 ~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
|.-.++.. .......|.+-|+-=..+|.++.+..+++..++
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 87777542 333455666777777778888888777777763
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=4e-06 Score=77.39 Aligned_cols=309 Identities=11% Similarity=0.070 Sum_probs=180.6
Q ss_pred CCCchhhhcCHHHHHHHHHHHhhc-CCCCCC--HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHH
Q 013010 102 YRDPQKVTLGLNKATEFYHWVERF-FDFFHN--EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV 178 (451)
Q Consensus 102 ~~~~~~~~~~~~~A~~~f~~~~~~-~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~ 178 (451)
.++.+-+...+.+|+.+|+....+ +.+..+ ....+.+...+.+.|+++.|..-|+...+.. |+..+--.|+-+
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~----pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA----PNFIAALNLIIC 318 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC----ccHHhhhhhhhh
Confidence 345555566788999999887754 111111 3356666667889999999999999988774 243333445555
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCC------------CHHHHH--------------------------------------
Q 013010 179 LGEEGLVNEALATFYRMKQFRCRP------------DVYAYN-------------------------------------- 208 (451)
Q Consensus 179 ~~~~g~~~~A~~~~~~m~~~g~~p------------~~~~~~-------------------------------------- 208 (451)
+..-|+.++..+.|..|..--..| +....|
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f 398 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF 398 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch
Confidence 666788899888998887632222 111110
Q ss_pred -------------------------HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc-CC-chhhh
Q 013010 209 -------------------------VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY-GM-QTGCR 261 (451)
Q Consensus 209 -------------------------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~-g~-~~~~~ 261 (451)
.-...|.+.|+++.|.+++.-..+...+ .-...-+.|-..+.-. |. ...+.
T Consensus 399 a~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk--~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 399 AAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNK--TASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred hcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccch--hhHHHhhhhHHHHHHhcccchhHHH
Confidence 0122356678888888888777665433 1112222222222221 21 01110
Q ss_pred H-------H----------------HHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 013010 262 K-------A----------------IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK--- 315 (451)
Q Consensus 262 ~-------~----------------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--- 315 (451)
. . ..+++++|.+.|++.....-.-....||+=+ .+-..|++++|++.|-.+..
T Consensus 477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHH
Confidence 0 0 0157777887777776543222223333222 23455666666665544322
Q ss_pred -----------------------------CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010 316 -----------------------------KGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365 (451)
Q Consensus 316 -----------------------------~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 365 (451)
..+.| |+....-|-..|-+.|+-..|.+..-+--+.. +-+..+..-|.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryf--p~nie~iewl~ 633 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF--PCNIETIEWLA 633 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc--CcchHHHHHHH
Confidence 11233 55566666666666666666666554433321 45566666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCCchHHHHHHHHHH
Q 013010 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD-ALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 366 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~a~~~~~~~~~ 421 (451)
..|....-+++|+.+|++.. -+.|+..-|..++. ++.+.|++..|.+.+++.-+
T Consensus 634 ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66666667777888777643 37899999988765 55788999999888876543
No 61
>PF12854 PPR_1: PPR repeat
Probab=98.87 E-value=3.6e-09 Score=62.25 Aligned_cols=34 Identities=35% Similarity=0.773 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 013010 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (451)
Q Consensus 198 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 231 (451)
+|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788999999999999999999999999999884
No 62
>PF12854 PPR_1: PPR repeat
Probab=98.83 E-value=4.9e-09 Score=61.68 Aligned_cols=32 Identities=63% Similarity=1.107 Sum_probs=16.3
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313 (451)
Q Consensus 282 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 313 (451)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=1.2e-06 Score=77.72 Aligned_cols=229 Identities=14% Similarity=0.054 Sum_probs=189.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHH
Q 013010 136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN-VVINAL 214 (451)
Q Consensus 136 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~ 214 (451)
+.+...|.+.|.+.+|.+.++.-.... +-..||-.|-+.|.+..+++.|+.+|.+-.+. .|-.+||- -+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~----~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF----PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC----CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence 457788999999999999998877763 24557999999999999999999999998873 46556654 455677
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 013010 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294 (451)
Q Consensus 215 ~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 294 (451)
-..++.++|.++|+...+.. +.++.....+..+|.-.+ +.+-|+.+++++.+.|+. +...|+.+-
T Consensus 301 eam~~~~~a~~lYk~vlk~~---~~nvEaiAcia~~yfY~~-----------~PE~AlryYRRiLqmG~~-speLf~Nig 365 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH---PINVEAIACIAVGYFYDN-----------NPEMALRYYRRILQMGAQ-SPELFCNIG 365 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC---CccceeeeeeeeccccCC-----------ChHHHHHHHHHHHHhcCC-ChHHHhhHH
Confidence 77899999999999998875 357777777778888777 889999999999999865 678888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 013010 295 DGCCKTYRIERALELFDDMNKKGCIPN--RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372 (451)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 372 (451)
-+|.-.+++|-++--|......--.|+ ...|-.|-......|++..|.+.|+-....+ .-+...++.|.-.-.+.|
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSG 443 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcC
Confidence 888899999999999998877655554 3455556666677899999999999988876 567789999988889999
Q ss_pred CHHHHHHHHHHHHhC
Q 013010 373 RVLEARDFLAELVDG 387 (451)
Q Consensus 373 ~~~~A~~l~~~m~~~ 387 (451)
++++|..++....+.
T Consensus 444 ~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 444 DILGARSLLNAAKSV 458 (478)
T ss_pred chHHHHHHHHHhhhh
Confidence 999999999887653
No 64
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.79 E-value=3.1e-06 Score=85.09 Aligned_cols=286 Identities=13% Similarity=0.075 Sum_probs=205.5
Q ss_pred hhhhcCHHHHHHHHHHHhhcCC--CCCCHH-------hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHH
Q 013010 106 QKVTLGLNKATEFYHWVERFFD--FFHNEM-------TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLI 176 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~--~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li 176 (451)
+-..|.+.+|.+.|........ ..++.. -|| +...+-..++++.|.+++..+.+..+. =...|--+.
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~---YId~ylRl~ 537 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPG---YIDAYLRLG 537 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCch---hHHHHHHhh
Confidence 3346778899999888765411 223331 344 555566678999999999999988532 122343444
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 013010 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (451)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~ 256 (451)
......++..+|...+....+.+ ..+...+..+.+.+.+..++..|.+-|....+.-.. .+|.++.-.|.+.|.+.-.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~-~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST-KTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc-CCchhHHHHhhHHHHHHhc
Confidence 33334578889999999888743 456677777777888888888888877766655443 3677777777776654432
Q ss_pred chhh-hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013010 257 QTGC-RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335 (451)
Q Consensus 257 ~~~~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 335 (451)
.... .+.-++..+.|+++|.+..... +-|...-|-+--.++..|++.+|..+|.+..+... -+..+|-.+..+|...
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHH
Confidence 2111 1222347889999999888753 45777778888889999999999999999998754 2456788899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399 (451)
Q Consensus 336 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 399 (451)
|++..|+++|+...+.....-+....+.|.+++.+.|.+.+|.+.+.........-....||..
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 9999999999987776654678889999999999999999999988776654443334445543
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.5e-05 Score=75.82 Aligned_cols=271 Identities=14% Similarity=0.008 Sum_probs=188.9
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 188 (451)
.+++++..++++.+.+. .++....+..=|..+...|+..+-..+=.++++..+. ...+|-++.--|.-.|+..+|
T Consensus 257 ~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~---~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS---KALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred cChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC---CCcchhhHHHHHHHhcCcHHH
Confidence 44567777777777654 3445555555566777777777777777777776532 455677777777777888888
Q ss_pred HHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CCCCHHHHHHHHHHHHhcCCchhhhHHHHH
Q 013010 189 LATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFR-CPPDVYTYTILISSYCKYGMQTGCRKAIRR 266 (451)
Q Consensus 189 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~p~~~~~~~li~~~~~~g~~~~~~~~~~~ 266 (451)
.+.|.+.... .|. ...|-....+|+-.|..|.|...+....+.-.. +.|.. | +---|.+.+
T Consensus 332 Rry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Y--lgmey~~t~----------- 394 (611)
T KOG1173|consen 332 RRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--Y--LGMEYMRTN----------- 394 (611)
T ss_pred HHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--H--HHHHHHHhc-----------
Confidence 8888776542 232 456777777788888888887777655443111 12322 2 233455566
Q ss_pred HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHH
Q 013010 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK------GCIPNRVTYNSFIRYYSVVNEIDK 340 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~li~~~~~~g~~~~ 340 (451)
.++.|.++|.+.... .+-|+..++-+--.....+.+.+|..+|+..... .......+++.|-.+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 788899998877643 2345667777766667788899999988876521 111245678888889999999999
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013010 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406 (451)
Q Consensus 341 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 406 (451)
|+..+++..... +-+..+|..+--.|...|+++.|.+.|.+.. .+.|+..+-..++..+...
T Consensus 474 AI~~~q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 474 AIDYYQKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 999999988866 6788888888888999999999999998765 4778877777776655544
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.77 E-value=1.2e-05 Score=68.10 Aligned_cols=209 Identities=13% Similarity=0.009 Sum_probs=153.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 013010 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (451)
Q Consensus 134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 213 (451)
+...|.-.|.+.|+...|..-+++..+.... +..+|..+...|-+.|+.+.|.+.|+...+.. +-+..+.|..-..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH
Confidence 4555777788888888888888888887632 56678888888888888888888888888743 2356777777888
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 013010 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293 (451)
Q Consensus 214 ~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 293 (451)
+|..|++++|...|++...... .+--..+|..+.-+..+.| +.+.|...|++-.+.. +-...+.-.+
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~-Y~~~s~t~eN~G~Cal~~g-----------q~~~A~~~l~raL~~d-p~~~~~~l~~ 179 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPA-YGEPSDTLENLGLCALKAG-----------QFDQAEEYLKRALELD-PQFPPALLEL 179 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCC-CCCcchhhhhhHHHHhhcC-----------CchhHHHHHHHHHHhC-cCCChHHHHH
Confidence 8888888888888888776543 1234467777877788888 7778888887777642 2234556667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHH
Q 013010 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363 (451)
Q Consensus 294 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 363 (451)
.....+.|++-.|...++.....+. ++..+.-..|..-...|+.+.+.+.=..+.+. .|...-|..
T Consensus 180 a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~---fP~s~e~q~ 245 (250)
T COG3063 180 ARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL---FPYSEEYQT 245 (250)
T ss_pred HHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHh
Confidence 7777888888888888888777765 77777777777777888888877776666654 355444433
No 67
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.77 E-value=2.2e-05 Score=74.86 Aligned_cols=266 Identities=12% Similarity=-0.014 Sum_probs=164.8
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHH---HHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHH
Q 013010 139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC---LIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINAL 214 (451)
Q Consensus 139 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~ 214 (451)
...+...|++++|.+++++..+.... +...+.. ........+....+.+.+.. .. ...|+ ......+...+
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYPR---DLLALKLHLGAFGLGDFSGMRDHVARVLPL-WA-PENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHhHHHHHhcccccCchhHHHHHhc-cC-cCCCCcHHHHHHHHHHH
Confidence 34556789999999999998887522 3334442 11112224555666666654 11 22333 44555666788
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC-CCCH--hhHH
Q 013010 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF-VPDV--VAYN 291 (451)
Q Consensus 215 ~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~ 291 (451)
...|++++|...+++..+.. |.+...+..+...|...| ++++|...+++.....- .++. ..|-
T Consensus 125 ~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g-----------~~~eA~~~l~~~l~~~~~~~~~~~~~~~ 190 (355)
T cd05804 125 EEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQG-----------RFKEGIAFMESWRDTWDCSSMLRGHNWW 190 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHhhhhccCCCcchhHHHHH
Confidence 89999999999999999875 356778889999999999 99999999988776421 2232 2355
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHH-HhcCCCCCChhhHHHH
Q 013010 292 CLIDGCCKTYRIERALELFDDMNKKGC-IPNRVTY-N--SFIRYYSVVNEIDKAIEM--MRKM-QNLNHGVPTSSSYTPI 364 (451)
Q Consensus 292 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~-~--~li~~~~~~g~~~~A~~~--~~~m-~~~~~~~p~~~~~~~l 364 (451)
.+...+...|++++|..++++...... .+..... + .++.-+...|..+.+.+. .... ................
T Consensus 191 ~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 270 (355)
T cd05804 191 HLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHA 270 (355)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 677889999999999999999864422 1222221 2 233333344433333222 1111 1110101111222356
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCC-------C-CHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010 365 IHALCEAGRVLEARDFLAELVDGGSV-------P-REYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423 (451)
Q Consensus 365 i~~~~~~g~~~~A~~l~~~m~~~g~~-------p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g 423 (451)
..++...|+.+.|..+++.+...... . .....-...-++...|+.+.|.+.+...+..+
T Consensus 271 a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 271 ALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 66778889999999999998753221 1 11222223334568899999999988887543
No 68
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.76 E-value=0.00018 Score=69.93 Aligned_cols=289 Identities=12% Similarity=0.018 Sum_probs=170.6
Q ss_pred CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 013010 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206 (451)
Q Consensus 127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 206 (451)
|+..+..-|-.=...|-..|.+-.+..+.......|+....-..||..-...|.+.+.++-|..+|....+. ++-+...
T Consensus 474 gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~sl 552 (913)
T KOG0495|consen 474 GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSL 552 (913)
T ss_pred ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHH
Confidence 444444444444445555555555555555555555544344566777777778888888888888877763 2335566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH---------------------
Q 013010 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR--------------------- 265 (451)
Q Consensus 207 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~--------------------- 265 (451)
|......--..|..+....+|++.... ||-....|-.....+-..|+...++..+.
T Consensus 553 Wlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~ 629 (913)
T KOG0495|consen 553 WLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhh
Confidence 666655555567777777777777665 33344455555555666663333332221
Q ss_pred --HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 013010 266 --RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRYYSVVNEIDKAI 342 (451)
Q Consensus 266 --~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~ 342 (451)
..++.|..+|.+... ..|+...|..-+..---.++.++|.+++++..+. -|+ ...|-.+-+.+-+.++++.|.
T Consensus 630 en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 630 ENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred ccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 145555555554443 3455555555444444555666666666655544 233 234444444555555566665
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH--
Q 013010 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI-- 420 (451)
Q Consensus 343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~-- 420 (451)
+.|..=.+.. +-.+..|-.|.+.=-+.|.+-.|..++++-.-.+- -+...|-..|+.=.+.|..+.|...+.+.+
T Consensus 706 ~aY~~G~k~c--P~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 706 EAYLQGTKKC--PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHhccccC--CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555443322 23344555565666667788888888887765542 356788888999999999988888877776
Q ss_pred --HhchHH
Q 013010 421 --RDGIEY 426 (451)
Q Consensus 421 --~~g~~~ 426 (451)
..|+-+
T Consensus 783 cp~sg~LW 790 (913)
T KOG0495|consen 783 CPSSGLLW 790 (913)
T ss_pred CCccchhH
Confidence 356553
No 69
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.74 E-value=9.3e-06 Score=81.84 Aligned_cols=188 Identities=15% Similarity=0.089 Sum_probs=130.5
Q ss_pred CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC-CCCCHhhHHHHHHH
Q 013010 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLIDG 296 (451)
Q Consensus 218 g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~ 296 (451)
+...+|..++.+.....- .+...++.+-..+.+.. .+..|.+-|....+.- ..+|..+.-+|-+.
T Consensus 544 ~~~~ea~~~lk~~l~~d~---~np~arsl~G~~~l~k~-----------~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDS---SNPNARSLLGNLHLKKS-----------EWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred cCcHHHHHHHHHHHhccc---CCcHHHHHHHHHHHhhh-----------hhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 344455555555444332 23333333444444444 4555555555444321 22466665555554
Q ss_pred HHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010 297 CCK------------TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364 (451)
Q Consensus 297 ~~~------------~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 364 (451)
|.. .+..++|+++|....... +-|...-|-+-..++..|++.+|..+|.+..+.. .-+..+|-.+
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNl 686 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNL 686 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeH
Confidence 432 245788999999888763 2367777888888999999999999999999876 3466789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010 365 IHALCEAGRVLEARDFLAELVD-GGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422 (451)
Q Consensus 365 i~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 422 (451)
.+.|...|++-.|+++|+.-.+ ..-.-+....+.|.+++-+.|.+.++.+.+......
T Consensus 687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999987664 455557888999999999999999888887776643
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.9e-05 Score=73.89 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 013010 267 RIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 345 (451)
++++|..=|++.... .| +...|-.+--+..+.+++++++..|++.++. ++-.+..|+.....+...+++++|.+.|
T Consensus 409 q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 409 QYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 777888888777654 33 3445555555666888999999999998876 3445788999999999999999999999
Q ss_pred HHHHhcCCC------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 013010 346 RKMQNLNHG------VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419 (451)
Q Consensus 346 ~~m~~~~~~------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~ 419 (451)
+........ .+.+..--.++-.-. .+++..|.+++...++..-+ ....|..|.+.-.+.|+.++|.+.+++.
T Consensus 486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 486 DKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 987765421 111112222222222 27889999999988875432 3568999999999999999999998877
Q ss_pred H
Q 013010 420 I 420 (451)
Q Consensus 420 ~ 420 (451)
.
T Consensus 564 a 564 (606)
T KOG0547|consen 564 A 564 (606)
T ss_pred H
Confidence 6
No 71
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.73 E-value=0.00013 Score=70.72 Aligned_cols=284 Identities=13% Similarity=0.003 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHH
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 191 (451)
.++-..+|+....+ ++.....|-.....+-..|++..|..++....+.+. .+...|-.-++.-+.+.++++|..+
T Consensus 566 ~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p---nseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 566 RESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP---NSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred HHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC---CcHHHHHHHHHHhhccccHHHHHHH
Confidence 44444455554432 333444444444555555666666666665555431 1455566666666666666666666
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHH-HHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 013010 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY-TYTILISSYCKYGMQTGCRKAIRRRIWE 270 (451)
Q Consensus 192 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~-~~~~li~~~~~~g~~~~~~~~~~~~~~~ 270 (451)
|.+.... .|+...|.--++.---.++.++|.+++++..+.- |+-. .|-.+-..+-+.+ +++.
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f----p~f~Kl~lmlGQi~e~~~-----------~ie~ 703 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF----PDFHKLWLMLGQIEEQME-----------NIEM 703 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC----CchHHHHHHHhHHHHHHH-----------HHHH
Confidence 6665542 3555555554444445566666666666555442 3332 3333334444444 5555
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 271 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
|.+.|..=.+. ++-....|-.|...=-+.|.+-+|..+++...-.+ +-+...|-..|+.=.+.|+.+.|..++.+..+
T Consensus 704 aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 704 AREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555433221 22233455555555567778888888888776653 22677888888888888888888887776665
Q ss_pred cCC----------------------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013010 351 LNH----------------------------GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402 (451)
Q Consensus 351 ~~~----------------------------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 402 (451)
... ..-|++..-.+...|....+++.|.+.|.+.++.+-. +..+|.-+...
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykf 860 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKF 860 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHH
Confidence 432 0234555556666677777888888888888765422 35678888888
Q ss_pred HHhcCCCchHHHHHHHHH
Q 013010 403 LNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 403 ~~~~g~~~~a~~~~~~~~ 420 (451)
+.++|..+.-.+++.+..
T Consensus 861 el~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 861 ELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 888888777777777766
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.73 E-value=1.5e-05 Score=67.56 Aligned_cols=183 Identities=16% Similarity=0.116 Sum_probs=93.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhh
Q 013010 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289 (451)
Q Consensus 210 li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 289 (451)
|.-+|...|+...|.+-+++..+.. |-+..++..+...|.+.| ..+.|.+-|+...... +-+..+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~G-----------e~~~A~e~YrkAlsl~-p~~GdV 105 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLG-----------ENDLADESYRKALSLA-PNNGDV 105 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcC-----------ChhhHHHHHHHHHhcC-CCccch
Confidence 3344555555555555555555543 224445555555555555 4445555555444321 113344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013010 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368 (451)
Q Consensus 290 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 368 (451)
.|..-.-+|..|++++|...|+.....-.-| -..||..+.-+..+.|+.+.|.+.|++..+.. +-...+.-.+....
T Consensus 106 LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~ 183 (250)
T COG3063 106 LNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLH 183 (250)
T ss_pred hhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHH
Confidence 4445555555555555555555554432222 23455555555555555555555555555544 23334444555555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCc
Q 013010 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410 (451)
Q Consensus 369 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 410 (451)
.+.|++..|..+++.....+. ++....-..|+.-.+.|+-+
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHH
Confidence 555555555555555544433 55555555555555555555
No 73
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.68 E-value=3e-06 Score=77.47 Aligned_cols=247 Identities=11% Similarity=0.021 Sum_probs=140.5
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 013010 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223 (451)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 223 (451)
-.|++..+..-.+ ... ..+.........+.+++...|+.+.++ .++.... .|.......+...+...++-+.+
T Consensus 13 y~G~Y~~~i~e~~-~~~--~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKS--FSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp CTT-HHHHCHHHH-CHT--STCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HhhhHHHHHHHhh-ccC--CCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 3577777765444 222 122234445556677777788766543 3443332 56666665555444433445555
Q ss_pred HHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 013010 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303 (451)
Q Consensus 224 ~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 303 (451)
..-+++....... ..+..........+...| ++++|++++..- .+.......+..|.+.+++
T Consensus 86 l~~l~~~~~~~~~-~~~~~~~~~~A~i~~~~~-----------~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~ 147 (290)
T PF04733_consen 86 LEELKELLADQAG-ESNEIVQLLAATILFHEG-----------DYEEALKLLHKG------GSLELLALAVQILLKMNRP 147 (290)
T ss_dssp HHHHHHCCCTS----CHHHHHHHHHHHHCCCC-----------HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhccc-cccHHHHHHHHHHHHHcC-----------CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCH
Confidence 5555554433321 122222223333445556 777777777532 2456666677788888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 013010 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSV----VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379 (451)
Q Consensus 304 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 379 (451)
+.|.+.++.|.+.+ +..+...|..++.. .+.+.+|..+|+++.+.. .+++.+.+.+..++...|++++|.+
T Consensus 148 dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~ 222 (290)
T PF04733_consen 148 DLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEE 222 (290)
T ss_dssp HHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 88888888887653 23344444444433 235788888888877653 5677777888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Q 013010 380 FLAELVDGGSVPREYTYKLVCDALNAAEEP-SLLDDGLRKRIR 421 (451)
Q Consensus 380 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a~~~~~~~~~ 421 (451)
++.+..+.+- -+..|...++-+....|+. +.+.+.+.++..
T Consensus 223 ~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 223 LLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 8877665432 2455666677777777777 445555555553
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.4e-05 Score=74.81 Aligned_cols=223 Identities=13% Similarity=0.143 Sum_probs=174.6
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 013010 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221 (451)
Q Consensus 142 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 221 (451)
+.-.|+...|..-|+...+....+ ++ .|--+...|....+.++..+.|++..+.+ +-|..+|..-...+.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~--lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NS--LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-ch--HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 445688899999999988876432 22 36677778999999999999999998855 235667766666677778999
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 013010 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301 (451)
Q Consensus 222 ~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 301 (451)
+|..=|++.++.. |-+...|--+.-+..+.+ ++++++..|++.+++ ++--+..||.....+...+
T Consensus 412 ~A~aDF~Kai~L~---pe~~~~~iQl~~a~Yr~~-----------k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 412 EAIADFQKAISLD---PENAYAYIQLCCALYRQH-----------KIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQ 476 (606)
T ss_pred HHHHHHHHHhhcC---hhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHH
Confidence 9999999998775 357778888888888888 999999999999865 5666789999999999999
Q ss_pred CHHHHHHHHHHHHhCC-----CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 013010 302 RIERALELFDDMNKKG-----CIPNRVTY--NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374 (451)
Q Consensus 302 ~~~~a~~~~~~m~~~g-----~~p~~~t~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 374 (451)
+++.|.+.|+...+.. +..+..++ ..++..-. .+++..|..++++..+.. +-....|..|...-.+.|++
T Consensus 477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhH
Confidence 9999999999876541 11122222 22222222 389999999999999876 45667899999999999999
Q ss_pred HHHHHHHHHHHh
Q 013010 375 LEARDFLAELVD 386 (451)
Q Consensus 375 ~~A~~l~~~m~~ 386 (451)
++|+++|++-..
T Consensus 554 ~eAielFEksa~ 565 (606)
T KOG0547|consen 554 DEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.64 E-value=0.00014 Score=69.45 Aligned_cols=271 Identities=13% Similarity=0.020 Sum_probs=167.3
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccH-HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTT-SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
..|..+...+...|+.+.+.+.+....+.... ..+. .........+...|++++|.+.+++..+.. +.|...+.. .
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAA-RATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 34555666666778888877777666555422 1222 222223345567899999999999988752 334444443 2
Q ss_pred HHHHh----cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 013010 212 NALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287 (451)
Q Consensus 212 ~~~~~----~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 287 (451)
..+.. .+..+.+.+.+.... +. .+........+...+...| ++++|...+++..+.. +.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~--~~-~~~~~~~~~~~a~~~~~~G-----------~~~~A~~~~~~al~~~-p~~~ 148 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA--PE-NPDYWYLLGMLAFGLEEAG-----------QYDRAEEAARRALELN-PDDA 148 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC--cC-CCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhC-CCCc
Confidence 22322 455555666655411 11 1234455566777888999 8999999999998764 3346
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhH-H-
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGC-IPNR--VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY-T- 362 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~- 362 (451)
..+..+...+...|++++|...++......- .|+. ..|..+...+...|++++|..++++........+..... +
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA 228 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH
Confidence 6778888899999999999999998776532 2332 345578888999999999999999986433211112111 1
Q ss_pred -HHHHHHHHcCCHHHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 363 -PIIHALCEAGRVLEARDF--LAELVDGGS--VPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 363 -~li~~~~~~g~~~~A~~l--~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
.++.-+...|..+.+.++ +........ ......-.....++...|+.+.+...+.....
T Consensus 229 ~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 229 ASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 223333444543333332 111111111 11222233577888999999999999988774
No 76
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=4.3e-05 Score=79.85 Aligned_cols=227 Identities=14% Similarity=0.083 Sum_probs=180.4
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHH
Q 013010 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-----DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242 (451)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~ 242 (451)
+...|-.-|.-....++.++|.++.++.... +.+ -...|.++++.-...|.-+...++|++..+.. -...
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc----d~~~ 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC----DAYT 1531 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc----chHH
Confidence 5556777788888889999999999988762 211 24567777777777788888999999998764 2346
Q ss_pred HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 013010 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN- 321 (451)
Q Consensus 243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~- 321 (451)
.|..|...|.+.+ .+++|-++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+. -|.
T Consensus 1532 V~~~L~~iy~k~e-----------k~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~ 1597 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSE-----------KNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQ 1597 (1710)
T ss_pred HHHHHHHHHHHhh-----------cchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchh
Confidence 7888999999998 889999999999874 3356788889999999999999999999987765 343
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHH
Q 013010 322 --RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR--EYTYK 397 (451)
Q Consensus 322 --~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~ 397 (451)
.....-.+..-.+.|+.+.+..+|+...... +--...|+..|+.=.++|+.+.+..+|++.+..++.|- ...|.
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 3344455556678899999999999988876 34567899999999999999999999999999998886 45788
Q ss_pred HHHHHHHhcCCCchHHHH
Q 013010 398 LVCDALNAAEEPSLLDDG 415 (451)
Q Consensus 398 ~li~~~~~~g~~~~a~~~ 415 (451)
..++.=...|+-+.++.+
T Consensus 1676 kwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHhcCchhhHHHH
Confidence 888888888887755433
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.52 E-value=8e-06 Score=74.65 Aligned_cols=224 Identities=12% Similarity=0.098 Sum_probs=139.9
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI- 211 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li- 211 (451)
....-+..++...|+++.+. .++.... .+.......+...+...++-+.++.-+++.......++..++..+.
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl---~ei~~~~---~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVL---SEIKKSS---SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHH---HHS-TTS---SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHH---HHhccCC---ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 34445667777778766543 3332322 2344444444444433355566666665555444332333333322
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHH
Q 013010 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291 (451)
Q Consensus 212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 291 (451)
..+...|++++|++++..- .+.......+..|.+.+ +++.|.+.++.|.+.. .| .+..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~-----------R~dlA~k~l~~~~~~~--eD-~~l~ 167 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMN-----------RPDLAEKELKNMQQID--ED-SILT 167 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT------------HHHHHHHHHHHHCCS--CC-HHHH
T ss_pred HHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcC--Cc-HHHH
Confidence 3455678899888887642 25667778888899988 8889999999988652 34 3333
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010 292 CLIDGCC----KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367 (451)
Q Consensus 292 ~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 367 (451)
.+..++. ....+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+ +-+..+...++-.
T Consensus 168 qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d~LaNliv~ 244 (290)
T PF04733_consen 168 QLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPDTLANLIVC 244 (290)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHHHHHHHHHH
Confidence 3444443 234688999999997665 56788888888889999999999999999887655 4566677777777
Q ss_pred HHHcCCH-HHHHHHHHHHHhC
Q 013010 368 LCEAGRV-LEARDFLAELVDG 387 (451)
Q Consensus 368 ~~~~g~~-~~A~~l~~~m~~~ 387 (451)
....|+. +.+.+++.++...
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhCCChhHHHHHHHHHHHh
Confidence 7777877 6677888887753
No 78
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=0.0002 Score=68.40 Aligned_cols=266 Identities=14% Similarity=0.065 Sum_probs=199.7
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+......-..-+-..+++.+..++++.+.+.. + +....+..=|.++...|+..+-..+=..|.+. .+-...+|-++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-p--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-P--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-C--CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 34444445555667889999999999988875 2 24445777777888888887777777777764 34568899999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh--cCC-CCCH
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF--KGF-VPDV 287 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~--~~~-~~~~ 287 (451)
.--|.-.|+.++|.+.|.+....... =...|-.+...|+-.| .-++|...+...-+ .|. .|.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~---fgpaWl~fghsfa~e~-----------EhdQAmaaY~tAarl~~G~hlP~- 383 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT---FGPAWLAFGHSFAGEG-----------EHDQAMAAYFTAARLMPGCHLPS- 383 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc---ccHHHHHHhHHhhhcc-----------hHHHHHHHHHHHHHhccCCcchH-
Confidence 88888889999999999987655422 2346777788888888 66777777765543 222 222
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCC-ChhhH
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN----HGVP-TSSSY 361 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~p-~~~~~ 361 (451)
.| +---|.+.++.+.|.+.|.+.... .| |+...+-+--.....+.+.+|..+|......- ...+ ...++
T Consensus 384 -LY--lgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~ 458 (611)
T KOG1173|consen 384 -LY--LGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTL 458 (611)
T ss_pred -HH--HHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHH
Confidence 22 334577889999999999987754 45 67778877777778899999999998876221 1112 45578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 362 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
+.|-++|.+.+.+++|+..++..+.. .+-+..++.++.-.|...|+++.|.+.+++...
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 89999999999999999999998865 344788999999999999999999999999874
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=0.00047 Score=63.50 Aligned_cols=269 Identities=14% Similarity=0.050 Sum_probs=113.5
Q ss_pred CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 013010 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206 (451)
Q Consensus 127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 206 (451)
.++-|+.....+...+...|+.++|...|+.....+.........|..| +...|+.+....+...+.... +-+...
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~ 302 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASH 302 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhh
Confidence 3444555666666666666666666666666555432211112223222 233444444444444433210 112222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 013010 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286 (451)
Q Consensus 207 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 286 (451)
|-.-.......++++.|+.+-++-.+..- -+...|-.--..+...+ +.++|.-.|+..+... +-+
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~---r~~~alilKG~lL~~~~-----------R~~~A~IaFR~Aq~La-p~r 367 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEP---RNHEALILKGRLLIALE-----------RHTQAVIAFRTAQMLA-PYR 367 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCc---ccchHHHhccHHHHhcc-----------chHHHHHHHHHHHhcc-hhh
Confidence 22222223334444444444444443321 12223322223333333 4555555555443221 124
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCCCCC-hhhHHH
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI-RYYS-VVNEIDKAIEMMRKMQNLNHGVPT-SSSYTP 363 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ 363 (451)
...|.-|+..|...|++.+|.-+-+..... +.-+..+.+.+- ..+. ....-++|..+++.-.+.. |+ ....+.
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~---P~Y~~AV~~ 443 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN---PIYTPAVNL 443 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC---CccHHHHHH
Confidence 455555555555555555554443332221 011222222110 0010 1111233444444333321 22 223334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 364 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
+...|...|+.+++..+++.-.. ..||...-+.|.+.+.....+.++.+.+....
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44445555666666666555443 34555555566666666665555555555444
No 80
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.38 E-value=0.0007 Score=73.17 Aligned_cols=302 Identities=12% Similarity=0.055 Sum_probs=188.5
Q ss_pred hcCHHHHHHHHHHHhhcCCC-----CCC--HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc--cHHhHHHHHHHH
Q 013010 109 TLGLNKATEFYHWVERFFDF-----FHN--EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV--TTSSVTCLIKVL 179 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~-----~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~~li~~~ 179 (451)
.+++++|...++.......- .+. ......+...+...|++++|...++........... .....+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 45678888877766542111 111 112222334556789999999999987764211111 123445666677
Q ss_pred HhcCCHHHHHHHHHHHhhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCC-CCCCHHHHHHHHH
Q 013010 180 GEEGLVNEALATFYRMKQF----RC-RPDVYAYNVVINALCRVGNFNKARFLLEQMELP----GFR-CPPDVYTYTILIS 249 (451)
Q Consensus 180 ~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~p~~~~~~~li~ 249 (451)
...|++++|...+++.... |- .....++..+...+...|++++|...+++.... +.. .+.....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 7899999999999888652 11 112344556667788899999999998876542 211 0112344555666
Q ss_pred HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc--CCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC
Q 013010 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK--GFVP--DVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIPN 321 (451)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~ 321 (451)
.+...| ++++|...+.+.... ...+ ....+..+...+...|+++.|.+.+...... +..+.
T Consensus 582 ~~~~~G-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 582 LLWEWA-----------RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHhc-----------CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 777778 777777777665432 1112 2334455666778899999999999887542 11111
Q ss_pred HHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-
Q 013010 322 RVTY--NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT--SSSYTPIIHALCEAGRVLEARDFLAELVDG----GSVPR- 392 (451)
Q Consensus 322 ~~t~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~- 392 (451)
.... ...+..+...|+.+.|.+++..........+. ...+..+..++...|+.++|..++.+.... |..++
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 1011 11234455689999999998776543211110 111345667788899999999999887643 43332
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 393 EYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 393 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
..++..+..++.+.|+.+.|.+.+.+.++
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34677778889999999999999998874
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=0.00073 Score=62.30 Aligned_cols=259 Identities=12% Similarity=0.031 Sum_probs=187.9
Q ss_pred CCCchhhhcCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHH
Q 013010 102 YRDPQKVTLGLNKATEFYHWVERFFDFFH-NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG 180 (451)
Q Consensus 102 ~~~~~~~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~ 180 (451)
.++.+-..|+-++|+..|+...- ..| +..........+.+.|+.+....+...+.... +.+...|-.-.....
T Consensus 238 lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 238 LGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV---KYTASHWFVHAQLLY 311 (564)
T ss_pred HhhhhhhhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh---hcchhhhhhhhhhhh
Confidence 44667778999999999999863 333 33344445566788999999998888877654 124444555555666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhh
Q 013010 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260 (451)
Q Consensus 181 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~ 260 (451)
...+++.|+.+-++..+.+ +.+...|-.=..++...|+.++|.-.|...+... |.+...|.-|+.+|...|
T Consensus 312 ~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL~~Y~GL~hsYLA~~----- 382 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA---PYRLEIYRGLFHSYLAQK----- 382 (564)
T ss_pred hhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHhhc-----
Confidence 7889999999999888743 2345555555567788999999999999888764 468899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH-HHHHh-cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 013010 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI-DGCCK-TYRIERALELFDDMNKKGCIPN-RVTYNSFIRYYSVVNE 337 (451)
Q Consensus 261 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~-~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~ 337 (451)
++.+|.-.-++.... +..+..+.+.+- ..+.- ..--++|.++++.-... .|+ ....+.+...+...|.
T Consensus 383 ------~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 383 ------RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGP 453 (564)
T ss_pred ------hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCc
Confidence 777776655543321 122444444331 22222 22346788888775554 565 4556777788889999
Q ss_pred HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 338 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
.++++.+++..... .||....+.|-+.+.-.+.+.+|++.|......
T Consensus 454 ~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 454 TKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred cchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999999998874 589999999999999999999999999887753
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=6.3e-05 Score=67.14 Aligned_cols=188 Identities=12% Similarity=0.005 Sum_probs=130.2
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC-HHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR-PD-VYAYN 208 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~ 208 (451)
....+..+...+.+.|+++.|...++++............++..+..++...|++++|...|+++.+..-. |. ..++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 45567778888899999999999999998875332223356778889999999999999999999874311 11 12444
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHhhhCCCCCCCCH-HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010 209 VVINALCRV--------GNFNKARFLLEQMELPGFRCPPDV-YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279 (451)
Q Consensus 209 ~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~p~~-~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~ 279 (451)
.+..++... |+.++|.+.|+.+.... |+. ..+..+... + ..... ..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~a~~~~----~-----------~~~~~------~~ 166 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY----PNSEYAPDAKKRM----D-----------YLRNR------LA 166 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC----CCChhHHHHHHHH----H-----------HHHHH------HH
Confidence 455555544 77889999999998765 443 233222111 1 10010 00
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010 280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351 (451)
Q Consensus 280 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (451)
...-.+...+.+.|++++|...++...+.. .+.....+..+..+|...|+.++|..+++.+...
T Consensus 167 --------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 --------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 001245567889999999999999987662 1224578889999999999999999999888764
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.38 E-value=0.0024 Score=62.30 Aligned_cols=302 Identities=16% Similarity=0.127 Sum_probs=198.8
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 188 (451)
.|+-++|.+..+...+ +-..+..+|+.+.-.+....++++|.+.+......+. .|...|.-+--.=+..|+++..
T Consensus 54 lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~---dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK---DNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred ccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHhhhhH
Confidence 4556788888777653 4555778899888888888999999999999888763 2677777777667778888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH------HHhcCCchhhhH
Q 013010 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS------YCKYGMQTGCRK 262 (451)
Q Consensus 189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~------~~~~g~~~~~~~ 262 (451)
......+.+.. +-....|..+..++.-.|+...|..++++..+.... .|+...|.-.... ..+.|..+.+.+
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~-~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT-SPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 88888887742 234567788888888899999999999999877642 4677666543332 344454444433
Q ss_pred HHH-----------------------HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH-hcCCHHHH------------
Q 013010 263 AIR-----------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC-KTYRIERA------------ 306 (451)
Q Consensus 263 ~~~-----------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a------------ 306 (451)
-+. +++++|..++..+..+ .||..-|.-.+..+. +..+.-++
T Consensus 207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 221 5888999999988876 466665544433322 11111111
Q ss_pred -----------------------HHHHHHHHhCCC---------------------------------------------
Q 013010 307 -----------------------LELFDDMNKKGC--------------------------------------------- 318 (451)
Q Consensus 307 -----------------------~~~~~~m~~~g~--------------------------------------------- 318 (451)
.+++..+.+.|+
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 112222222332
Q ss_pred -CCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 013010 319 -IPNRVTY--NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394 (451)
Q Consensus 319 -~p~~~t~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 394 (451)
+|+...| -.++..|-..|+++.|...++....+. |+. ..|..=.+.+...|++++|..++++..+.. .+|..
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT---PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~ 440 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT---PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRA 440 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC---chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHH
Confidence 2333222 345666677788888888888777643 433 345455566778888888888887776553 24555
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010 395 TYKLVCDALNAAEEPSLLDDGLRKRIRDG 423 (451)
Q Consensus 395 t~~~li~~~~~~g~~~~a~~~~~~~~~~g 423 (451)
.-.--..-..++.+.++|.+++.+.-+.|
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 44455666777788888888887777665
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.35 E-value=0.00016 Score=64.57 Aligned_cols=195 Identities=16% Similarity=0.062 Sum_probs=131.3
Q ss_pred ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCH-
Q 013010 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD----VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV- 241 (451)
Q Consensus 167 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~- 241 (451)
.....+-.+...+...|++++|...|+++.... |+ ..++..+..++...|++++|...++++.+..-. .|..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchH
Confidence 356678888888999999999999999998743 43 246777888999999999999999999876521 1221
Q ss_pred HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV-AYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320 (451)
Q Consensus 242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 320 (451)
.++..+..++.+..... ....++.++|.+.|+.+... .|+.. .+.++... .. .... .
T Consensus 108 ~a~~~~g~~~~~~~~~~---~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~~------~------- 165 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRV---DRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRNR------L------- 165 (235)
T ss_pred HHHHHHHHHHHHhcccc---cCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHHH------H-------
Confidence 24555555555431000 00002788999999988865 34432 22222111 11 1110 0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
......+...|.+.|++++|...+.+..+.... +.....+..+..++.+.|++++|..+++.+...
T Consensus 166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011124556789999999999999999886532 224578899999999999999999999988754
No 85
>PLN02789 farnesyltranstransferase
Probab=98.34 E-value=0.00099 Score=61.86 Aligned_cols=206 Identities=11% Similarity=0.012 Sum_probs=141.7
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh-
Q 013010 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG-LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF- 220 (451)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~- 220 (451)
...++.++|..+..++...+.. +..+|+.--..+...| ++++++..++++.+.. +-+..+|+..-..+.+.|+.
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 4467888999999988887633 4456766666666667 5789999999988754 33556677655555566653
Q ss_pred -HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 013010 221 -NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299 (451)
Q Consensus 221 -~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 299 (451)
++++.+++.+.+... -|..+|+-..-.+.+.| +++++++.++++.+.+. -|...|+.....+.+
T Consensus 124 ~~~el~~~~kal~~dp---kNy~AW~~R~w~l~~l~-----------~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 124 ANKELEFTRKILSLDA---KNYHAWSHRQWVLRTLG-----------GWEDELEYCHQLLEEDV-RNNSAWNQRYFVITR 188 (320)
T ss_pred hHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHh
Confidence 677888888887763 48888888888888888 88899999999987653 355666665555544
Q ss_pred c---CCH----HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010 300 T---YRI----ERALELFDDMNKKGCIP-NRVTYNSFIRYYSVV----NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367 (451)
Q Consensus 300 ~---g~~----~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 367 (451)
. |.. ++..+...++... .| |...|+.+-..+... +...+|.+.+.+....+ +.+......|++.
T Consensus 189 ~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~al~~l~d~ 264 (320)
T PLN02789 189 SPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVFALSDLLDL 264 (320)
T ss_pred ccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc--CCcHHHHHHHHHH
Confidence 4 222 3555666555554 34 667787777777663 34456778877766644 4566777788888
Q ss_pred HHHc
Q 013010 368 LCEA 371 (451)
Q Consensus 368 ~~~~ 371 (451)
|+..
T Consensus 265 ~~~~ 268 (320)
T PLN02789 265 LCEG 268 (320)
T ss_pred HHhh
Confidence 8753
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=0.00025 Score=68.01 Aligned_cols=258 Identities=14% Similarity=0.075 Sum_probs=183.4
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC
Q 013010 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINALCRVGN 219 (451)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 219 (451)
-+.+.|++.+|.-.|+..++.+. -+...|--|-..-..+++-..|+..+.+..+. .| +......|.-.|...|.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP---~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDP---QHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhCh---HHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhh
Confidence 34567888888888888887753 36778888888888888888888888888774 34 56777777778888888
Q ss_pred hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhH-HHHHHHHHHHHHHHHHH-hcCCCCCHhhHHHHHHHH
Q 013010 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK-AIRRRIWEANHLFRLML-FKGFVPDVVAYNCLIDGC 297 (451)
Q Consensus 220 ~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~-~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~ 297 (451)
-..|++.++....... |- ..+..+ ...+....-.+ .....+.+..++|-++. +.+..+|..+...|--.|
T Consensus 369 q~~Al~~L~~Wi~~~p---~y----~~l~~a-~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKP---KY----VHLVSA-GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHHHHHHHHHHHHhCc---cc----hhcccc-CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 8888888887755431 10 000000 00000000000 00014556666666665 455557888888888889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHcCCHH
Q 013010 298 CKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT-SSSYTPIIHALCEAGRVL 375 (451)
Q Consensus 298 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 375 (451)
--.|++++|.+-|+..... .| |..+||.|-..+++..+..+|+.-|++..+.. |+ +.....|--+|...|.++
T Consensus 441 ~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq---P~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ---PGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred hcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC---CCeeeeehhhhhhhhhhhhHH
Confidence 9999999999999998876 56 78999999999999999999999999999864 33 345555666899999999
Q ss_pred HHHHHHHHHH---hC------CCCCCHHHHHHHHHHHHhcCCCchHHHHH
Q 013010 376 EARDFLAELV---DG------GSVPREYTYKLVCDALNAAEEPSLLDDGL 416 (451)
Q Consensus 376 ~A~~l~~~m~---~~------g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 416 (451)
+|.+.|-+.+ .. +..++...|.+|-.+++-.++.|.+.+..
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 9999886654 22 22334568888888888888888554443
No 87
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.6e-06 Score=51.45 Aligned_cols=33 Identities=55% Similarity=0.955 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 013010 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321 (451)
Q Consensus 289 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 321 (451)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677777777777777777777777777777776
No 88
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.26 E-value=2.1e-06 Score=51.02 Aligned_cols=34 Identities=38% Similarity=0.763 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 013010 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392 (451)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 392 (451)
.+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888886
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00086 Score=59.22 Aligned_cols=263 Identities=13% Similarity=0.060 Sum_probs=142.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH-HHH
Q 013010 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV-INA 213 (451)
Q Consensus 135 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~ 213 (451)
+++.+..+.+..+++.|.+++....++..+ +....+.|..+|-...++..|-..|+++... .|...-|... ...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~---~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR---SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 445555556666777777776666555422 4455666666666777777777777776652 3444444321 223
Q ss_pred HHhcCChHHHHHHHHHhhhCCCC-------------CC----------------CCHHHHHHHHHHHHhcCCchhhhHHH
Q 013010 214 LCRVGNFNKARFLLEQMELPGFR-------------CP----------------PDVYTYTILISSYCKYGMQTGCRKAI 264 (451)
Q Consensus 214 ~~~~g~~~~a~~~~~~m~~~g~~-------------~~----------------p~~~~~~~li~~~~~~g~~~~~~~~~ 264 (451)
+.+++.+..|+++...|.+...- .. -+..+.+.......+.|
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg--------- 158 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG--------- 158 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc---------
Confidence 44455566666666555432100 00 01112222222223333
Q ss_pred HHHHHHHHHHHHHHHh-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------------CCHHH------
Q 013010 265 RRRIWEANHLFRLMLF-KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-------------PNRVT------ 324 (451)
Q Consensus 265 ~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-------------p~~~t------ 324 (451)
++++|.+-|+...+ .|.. ....||.-+..| +.|+.+.|.+...++.++|++ ||...
T Consensus 159 --qyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 159 --QYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred --cHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 88999999988776 4554 456788666544 568899999999999887742 22211
Q ss_pred --HHHHHHH-------HHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 013010 325 --YNSFIRY-------YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395 (451)
Q Consensus 325 --~~~li~~-------~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 395 (451)
-+.++.+ +.+.|+.+.|.+-+-.|.-+.....|++|...+.-.= -.+++.+..+-+.-+.+.+. -...|
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ET 312 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPET 312 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHH
Confidence 1334443 4567889999888888765544344555544432111 11223333332333333221 23345
Q ss_pred HHHHHHHHHhcCCCchHHHHHH
Q 013010 396 YKLVCDALNAAEEPSLLDDGLR 417 (451)
Q Consensus 396 ~~~li~~~~~~g~~~~a~~~~~ 417 (451)
|..++-.||+..-++.|.+++.
T Consensus 313 FANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHh
Confidence 5555555555555555554443
No 90
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.21 E-value=2.4e-06 Score=50.39 Aligned_cols=33 Identities=39% Similarity=0.758 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 320 (451)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.21 E-value=0.0074 Score=59.02 Aligned_cols=122 Identities=17% Similarity=0.134 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013010 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368 (451)
Q Consensus 290 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 368 (451)
+-.++..+-+.|+++.|...++....+ .|+ ..-|..=.+.+...|++++|..++++..+.. .||...=+--..-.
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD--~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD--TADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--chhHHHHHHHHHHH
Confidence 344667778899999999999988776 555 3445555678899999999999999999887 68877766777888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHH--------HHH--HHHHHhcCCCchHHHHHH
Q 013010 369 CEAGRVLEARDFLAELVDGGSVPREYTY--------KLV--CDALNAAEEPSLLDDGLR 417 (451)
Q Consensus 369 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~--------~~l--i~~~~~~g~~~~a~~~~~ 417 (451)
.++++.++|.++....-..|. +...+ -.+ ..+|.+.|++..|.+-++
T Consensus 450 LrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 899999999999988887765 32222 111 345666666655544443
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.19 E-value=0.0021 Score=67.80 Aligned_cols=242 Identities=11% Similarity=0.021 Sum_probs=179.3
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcC-CCC-CccHHhHHHHHHHHHhcCCHHHHHH
Q 013010 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGE-LVTTSSVTCLIKVLGEEGLVNEALA 190 (451)
Q Consensus 113 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~-~~~~~~~~~li~~~~~~g~~~~A~~ 190 (451)
+.|.++-+.+. +-|-+...|-..+......++.++|.+++++....- +.. .--...|.++++.-..-|.-+...+
T Consensus 1442 esaeDferlvr---ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1442 ESAEDFERLVR---SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred cCHHHHHHHHh---cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 45555555544 334456678889999999999999999999987763 111 1123468888887777888899999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 013010 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270 (451)
Q Consensus 191 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~ 270 (451)
+|++..+.. -.-..|..|...|.+.++.++|-++|+.|.+.-- -....|...+..+.+.. .-+.
T Consensus 1519 VFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~---q~~~vW~~y~~fLl~~n-----------e~~a 1582 (1710)
T KOG1070|consen 1519 VFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG---QTRKVWIMYADFLLRQN-----------EAEA 1582 (1710)
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc---chhhHHHHHHHHHhccc-----------HHHH
Confidence 999999842 2346688899999999999999999999987632 46788999999999988 6677
Q ss_pred HHHHHHHHHhcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013010 271 ANHLFRLMLFKGFVPD---VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347 (451)
Q Consensus 271 a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 347 (451)
|..++.+..+. -|- .......+..-.+.|+.+++..+|+.....- +--...|+.+|..=.++|+.+.+..+|++
T Consensus 1583 a~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1583 ARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred HHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 88888777654 232 2334445555678999999999999988762 22578899999999999999999999999
Q ss_pred HHhcCCCCCC-hhhHHHHHHHHHHcCCHHH
Q 013010 348 MQNLNHGVPT-SSSYTPIIHALCEAGRVLE 376 (451)
Q Consensus 348 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 376 (451)
....+...-. ...|...+..=...|+-..
T Consensus 1660 vi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1660 VIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 9998862111 2345555544444565443
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.18 E-value=0.0018 Score=70.00 Aligned_cols=274 Identities=10% Similarity=-0.028 Sum_probs=167.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCC------CCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHH
Q 013010 138 MGIVFARGNNVKGLWDFLKDMSRRGNG------ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD----VYAY 207 (451)
Q Consensus 138 ll~~~~~~g~~~~a~~~~~~m~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~ 207 (451)
....+...|+++++...+......-.. +.........+-..+...|++++|...+++..+.--..+ ....
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 344456778999999988876543111 111112222233445678999999999998766311112 1344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CC--CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh----
Q 013010 208 NVVINALCRVGNFNKARFLLEQMELPGFRC-PP--DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF---- 280 (451)
Q Consensus 208 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~p--~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~---- 280 (451)
+.+...+...|++++|...+++.....-.. .+ ...++..+...+...| ++++|...+++...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G-----------~~~~A~~~~~~al~~~~~ 563 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG-----------FLQAAYETQEKAFQLIEE 563 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHH
Confidence 566667778999999999998875431110 01 2245566677788889 66666666655433
Q ss_pred cCCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 013010 281 KGFV--P-DVVAYNCLIDGCCKTYRIERALELFDDMNKK--GCIP--NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353 (451)
Q Consensus 281 ~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 353 (451)
.+.. + ....+..+...+...|++++|...+.+.... ...+ ...++..+...+...|+.++|.+.+.+......
T Consensus 564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 2211 1 2234455556677789999999999886543 1112 234445566677889999999999988765321
Q ss_pred CCCChhhH-----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010 354 GVPTSSSY-----TPIIHALCEAGRVLEARDFLAELVDGGSVPR---EYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422 (451)
Q Consensus 354 ~~p~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 422 (451)
.......+ ...+..+...|+.+.|.+++........... ...+..+..++...|+.+.|...+.+....
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 644 NGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred cccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 01111111 1122445568999999999877654221111 112456778889999999998888887753
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.18 E-value=0.00042 Score=71.83 Aligned_cols=221 Identities=8% Similarity=0.036 Sum_probs=152.0
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+...+..|+..+-..+++++|.++.+...+.... ....|-.+...+.+.++...+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~---~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK---SISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc---ceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 4667888999999999999999999977776432 233344444466667775555444 23
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 290 (451)
+.......++..+..+...|...+ -+..++..+..+|-+.| +.++|..+|+++.+.. +-|..+.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~----~~k~Al~~LA~~Ydk~g-----------~~~ka~~~yer~L~~D-~~n~~aL 153 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG----ENKLALRTLAEAYAKLN-----------ENKKLKGVWERLVKAD-RDNPEIV 153 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh----hhhHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcC-cccHHHH
Confidence 333444445545555555666554 46668888899999988 8889999999988876 5577888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----------------
Q 013010 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG---------------- 354 (451)
Q Consensus 291 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---------------- 354 (451)
|.+...|+.. ++++|.+++...... |...+++.++.++|.++......
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence 8888888888 899998888877654 44444555555555555443311
Q ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013010 355 --VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404 (451)
Q Consensus 355 --~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 404 (451)
.--+.++-.+...|...++++++..+++...+..-. |.....-++.+|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 222345556667777888899999999999876433 5566777777776
No 95
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.18 E-value=3.2e-06 Score=49.85 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 013010 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVP 391 (451)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 391 (451)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 96
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.0037 Score=59.17 Aligned_cols=112 Identities=15% Similarity=0.060 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 013010 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRYYSVVNEIDKAIEMM 345 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~ 345 (451)
.+++|+..++.+... .+-|..-.......+.+.++..+|.+.++.+... .|+ ....-.+-++|.+.|++++|+.++
T Consensus 321 ~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L 397 (484)
T COG4783 321 QYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRIL 397 (484)
T ss_pred ccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHH
Confidence 455666666655543 1223333344445555666666666666665554 343 334444555566666666666666
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 013010 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383 (451)
Q Consensus 346 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 383 (451)
+...... +-|+..|..|..+|...|+..+|..-..+
T Consensus 398 ~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 398 NRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 6655544 45555666666666666665555554433
No 97
>PLN02789 farnesyltranstransferase
Probab=98.17 E-value=0.0028 Score=58.84 Aligned_cols=216 Identities=11% Similarity=-0.003 Sum_probs=152.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVG-NFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (451)
Q Consensus 173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~ 250 (451)
+.+-..+...+..++|+.+++++.+. .|+ ..+|+.--.++...| ++++++..++++....- -+..+|+.--..
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np---knyqaW~~R~~~ 115 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP---KNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC---cchHHhHHHHHH
Confidence 33334444557788999999998874 343 456666555666667 57999999999988763 466667765555
Q ss_pred HHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013010 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330 (451)
Q Consensus 251 ~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 330 (451)
+.+.|.. ..++++.+++.+.+.. +-|..+|+-...++...|+++++++.++++.+.+.. |...|+....
T Consensus 116 l~~l~~~---------~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~ 184 (320)
T PLN02789 116 AEKLGPD---------AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYF 184 (320)
T ss_pred HHHcCch---------hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHH
Confidence 5555511 2356788888887653 347788888888888999999999999999987644 6677776655
Q ss_pred HHHhc---CC----HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010 331 YYSVV---NE----IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA----GRVLEARDFLAELVDGGSVPREYTYKLV 399 (451)
Q Consensus 331 ~~~~~---g~----~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~l 399 (451)
.+.+. |. .+++++...++.... +-|...|+.+...+... ++..+|.+.+.+..+.+ ..+......|
T Consensus 185 vl~~~~~l~~~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l 261 (320)
T PLN02789 185 VITRSPLLGGLEAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDL 261 (320)
T ss_pred HHHhccccccccccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHH
Confidence 55544 22 356777777777765 56778888888778773 34567888888877644 3467788889
Q ss_pred HHHHHhcC
Q 013010 400 CDALNAAE 407 (451)
Q Consensus 400 i~~~~~~g 407 (451)
++.|+...
T Consensus 262 ~d~~~~~~ 269 (320)
T PLN02789 262 LDLLCEGL 269 (320)
T ss_pred HHHHHhhh
Confidence 99998643
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=0.00044 Score=68.17 Aligned_cols=233 Identities=12% Similarity=0.043 Sum_probs=164.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 013010 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (451)
Q Consensus 134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 213 (451)
.=..+...+...|-...|..++++.. .|.-+|.+|+..|+..+|..+..+..++ +||...|..+.+.
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 33446677788889999999887753 3677888999999999999988877773 6888888888888
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 013010 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293 (451)
Q Consensus 214 ~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 293 (451)
.....-+++|.++++...... -..+.....+.+ +++++.+.|+.-.+.. +.-..+|-.+
T Consensus 467 ~~d~s~yEkawElsn~~sarA---------~r~~~~~~~~~~-----------~fs~~~~hle~sl~~n-plq~~~wf~~ 525 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISARA---------QRSLALLILSNK-----------DFSEADKHLERSLEIN-PLQLGTWFGL 525 (777)
T ss_pred ccChHHHHHHHHHhhhhhHHH---------HHhhccccccch-----------hHHHHHHHHHHHhhcC-ccchhHHHhc
Confidence 777777888888887643321 011111112244 7888888887655432 2234556555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 013010 294 IDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372 (451)
Q Consensus 294 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 372 (451)
-.+..+.++++.|.+.|...... .| +...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|...+....+.|
T Consensus 526 G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvg 601 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVG 601 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcc
Confidence 56667888999999999887765 56 46889999999999999999999999998877 344566777777788999
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 013010 373 RVLEARDFLAELVDGG-SVPREYTYKLVCDALN 404 (451)
Q Consensus 373 ~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~ 404 (451)
.+++|++.+.+|.+.. -.-|......++.+..
T Consensus 602 e~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 602 EFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred cHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 9999999998887431 1114444444444433
No 99
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.13 E-value=3.1e-05 Score=73.57 Aligned_cols=126 Identities=17% Similarity=0.201 Sum_probs=106.5
Q ss_pred CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 013010 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206 (451)
Q Consensus 127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 206 (451)
+.+.+......+++.+....+++.+..++.+..........-..|..++|+.|.+.|..++++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556778888899999899999999999988876433222334567999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc
Q 013010 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (451)
Q Consensus 207 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~ 254 (451)
+|.||+.+.+.|++..|.++..+|..++.- .+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~--~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEF--DNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhcc--CCchHHHHHHHHHHHh
Confidence 999999999999999999999999888754 6667777777777776
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.12 E-value=0.00072 Score=58.33 Aligned_cols=120 Identities=14% Similarity=0.060 Sum_probs=62.6
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 013010 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG 296 (451)
Q Consensus 217 ~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 296 (451)
.++.+++...++...+.. |.|...|..+...|...| ++++|...|++..... +-+...+..+..+
T Consensus 52 ~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~~~g-----------~~~~A~~a~~~Al~l~-P~~~~~~~~lA~a 116 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWRN-----------DYDNALLAYRQALQLR-GENAELYAALATV 116 (198)
T ss_pred chhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344455555555544443 245555666666666655 5556666665555432 2234444444444
Q ss_pred H-HhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 297 C-CKTYR--IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 297 ~-~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
+ ...|+ .++|.+++++..+.+-. +..++..+-..+.+.|++++|+..|+++.+..
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2 34444 35666666665554211 44555555555566666666666666665544
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=0.0013 Score=64.90 Aligned_cols=215 Identities=13% Similarity=0.014 Sum_probs=168.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH
Q 013010 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252 (451)
Q Consensus 173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~ 252 (451)
..+...+.+.|-...|..+|+++ ..|..+|.+|+..|+..+|..+..+-.+. +||...|..+.+...
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhcc
Confidence 45677788899999999999876 45777889999999999999998887774 389999998888877
Q ss_pred hcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013010 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332 (451)
Q Consensus 253 ~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 332 (451)
... -+++|.++++....+ -...++ ......++++++.+.|+.-.+.. +.-..+|-.+-.+.
T Consensus 469 d~s-----------~yEkawElsn~~sar----A~r~~~---~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~A 529 (777)
T KOG1128|consen 469 DPS-----------LYEKAWELSNYISAR----AQRSLA---LLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAA 529 (777)
T ss_pred ChH-----------HHHHHHHHhhhhhHH----HHHhhc---cccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHH
Confidence 666 788999998765433 001111 11233789999999998765542 22567787777788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchH
Q 013010 333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412 (451)
Q Consensus 333 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 412 (451)
.+.++++.|.+.|....... +-+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+-..|..-+....+-|.++.|
T Consensus 530 Lqlek~q~av~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHH
Confidence 89999999999999988754 4556799999999999999999999999999887 44455666667778899999999
Q ss_pred HHHHHHHHHh
Q 013010 413 DDGLRKRIRD 422 (451)
Q Consensus 413 ~~~~~~~~~~ 422 (451)
.+..+++.+.
T Consensus 607 ~~A~~rll~~ 616 (777)
T KOG1128|consen 607 IKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHHh
Confidence 9999888743
No 102
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0026 Score=55.43 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK----TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 342 (451)
+++-|.+.++.|.+-. +..|.+-|..++.+ .+.+.+|+-+|++|-+. ..|+..+.+-...++...|++++|.
T Consensus 152 r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHH
Confidence 5555555555555431 33444444444432 23355555555555442 3455555555555555555555555
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 013010 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372 (451)
Q Consensus 343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 372 (451)
.++++...+. .-++.+...+|-.-...|
T Consensus 228 ~lL~eaL~kd--~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 228 SLLEEALDKD--AKDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHHhcc--CCCHHHHHHHHHHHHHhC
Confidence 5555555544 233344444443333333
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00053 Score=59.58 Aligned_cols=158 Identities=15% Similarity=0.044 Sum_probs=100.3
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 013010 136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215 (451)
Q Consensus 136 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 215 (451)
..+-..+--.|+-+....+........ ..+....+..++...+.|++..|...|.+.... -++|..+|+.+--+|-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY---PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC---cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHH
Confidence 445555555666666666655544332 224445555677777777777777777777653 2567777777777777
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 013010 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID 295 (451)
Q Consensus 216 ~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 295 (451)
+.|+.++|..-|.+..+... -+...++.|.-.|.-.| +.+.|..++......+ .-|..+-..+..
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~---~~p~~~nNlgms~~L~g-----------d~~~A~~lll~a~l~~-~ad~~v~~NLAl 210 (257)
T COG5010 146 QLGRFDEARRAYRQALELAP---NEPSIANNLGMSLLLRG-----------DLEDAETLLLPAYLSP-AADSRVRQNLAL 210 (257)
T ss_pred HccChhHHHHHHHHHHHhcc---CCchhhhhHHHHHHHcC-----------CHHHHHHHHHHHHhCC-CCchHHHHHHHH
Confidence 77777777777777666542 34556666666666666 6777777777666543 235555666666
Q ss_pred HHHhcCCHHHHHHHHHH
Q 013010 296 GCCKTYRIERALELFDD 312 (451)
Q Consensus 296 ~~~~~g~~~~a~~~~~~ 312 (451)
.....|++++|..+...
T Consensus 211 ~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 211 VVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHhhcCChHHHHhhccc
Confidence 66777777777666554
No 104
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.08 E-value=6.1e-05 Score=71.62 Aligned_cols=125 Identities=9% Similarity=0.106 Sum_probs=103.4
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCh
Q 013010 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK--GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358 (451)
Q Consensus 281 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 358 (451)
.+.+.+......+++.+....+++.+..++...+.. ....-..|..++|+.|.+.|..+.++++++.=...|+ -||.
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi-F~D~ 138 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI-FPDN 138 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc-CCCh
Confidence 345567777888888888888888999988888765 2223355667999999999999999999998888888 8999
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013010 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406 (451)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 406 (451)
.+++.|++.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999998887777888888777777776
No 105
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.08 E-value=0.0086 Score=58.57 Aligned_cols=298 Identities=12% Similarity=0.087 Sum_probs=177.6
Q ss_pred ccCCCchhhhcCHHHHHHHHHHHhhcCCCCCC---HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCC---------CCc
Q 013010 100 AAYRDPQKVTLGLNKATEFYHWVERFFDFFHN---EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNG---------ELV 167 (451)
Q Consensus 100 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---------~~~ 167 (451)
..+++.|...++++.|..+|+..... .++.- ..+|-.-...=.+..+++.|.++.++.....-. .++
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 34456788888899999999887643 22211 223433344444667888888887765432111 111
Q ss_pred ------cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCH
Q 013010 168 ------TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241 (451)
Q Consensus 168 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~ 241 (451)
+...|...++.--..|-++....+|+.+.+..+- ++...-.....+-...-++++.++|++=...- + .|++
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LF-k-~p~v 546 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLF-K-WPNV 546 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC-C-CccH
Confidence 2234445555555567888888888888876543 22222221222333445778888887654432 1 2443
Q ss_pred -HHHHHHHHHHHh-cCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHhCC
Q 013010 242 -YTYTILISSYCK-YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC--KTYRIERALELFDDMNKKG 317 (451)
Q Consensus 242 -~~~~~li~~~~~-~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g 317 (451)
..|++.+.-+.+ -|. ..++.|..+|++..+ |++|...-+--|+.+-. +.|-...|+.++++.-..
T Consensus 547 ~diW~tYLtkfi~rygg---------~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~- 615 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGG---------TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA- 615 (835)
T ss_pred HHHHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-
Confidence 345555554433 221 178899999999888 77765433322332221 457788889999885443
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHH---HHHHHHHcCCHHHHHHHHHHHHhC-CCCC
Q 013010 318 CIPN--RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP---IIHALCEAGRVLEARDFLAELVDG-GSVP 391 (451)
Q Consensus 318 ~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~-g~~p 391 (451)
+.+. ...||+.|.--+..=-+....++|++..+. -|+...-.. ..+.=++.|.++.|..+|..-.+- .-+.
T Consensus 616 v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~ 692 (835)
T KOG2047|consen 616 VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRV 692 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcC
Confidence 4442 467888887766666666777788877764 355544333 333446779999999998765432 2333
Q ss_pred CHHHHHHHHHHHHhcCCCchHHHH
Q 013010 392 REYTYKLVCDALNAAEEPSLLDDG 415 (451)
Q Consensus 392 ~~~t~~~li~~~~~~g~~~~a~~~ 415 (451)
+..-|.+.-.-=.+.|+-+...+.
T Consensus 693 ~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 693 TTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHH
Confidence 456688887778888885544333
No 106
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=0.011 Score=55.73 Aligned_cols=207 Identities=14% Similarity=0.174 Sum_probs=150.5
Q ss_pred ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHH---HhcCChHHHHHHHHHhhhCCCC
Q 013010 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV-------YAYNVVINAL---CRVGNFNKARFLLEQMELPGFR 236 (451)
Q Consensus 167 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~ 236 (451)
.|-.+|--.++.-...|+.+...++|+.... +++|-. ..|--+=.+| ....+.+.+.++|+...+.
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l--- 395 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL--- 395 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---
Confidence 3556788888888888999999999999887 456622 1221111122 3468888999999888874
Q ss_pred CCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316 (451)
Q Consensus 237 ~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 316 (451)
+|....||.-+--.|++-.- -..++..|.+++.... |.-|-..+|...|..=.+.+++|.+..+|+...+.
T Consensus 396 IPHkkFtFaKiWlmyA~feI-------Rq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEI-------RQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred cCcccchHHHHHHHHHHHHH-------HHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45677787776666554320 0017778888887765 55788889999999889999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 317 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
+ +-|..+|.-....=...|+.+.|..+|.-.............|-..|+-=...|.++.|..+|+++++.
T Consensus 467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 4 227788888877778889999999999988774432222344555555556678999999999999865
No 107
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00092 Score=58.17 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=82.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 013010 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (451)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~ 256 (451)
..|+..|++++|++...... ..+....+ ...+.+..+++-|.+.+++|.+.. +..|.+-|..++.+.-.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~id-----ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQID-----EDATLTQLAQAWVKLAT 184 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHhc
Confidence 44666677777766665511 12222222 233455566666777777766542 45566666666554321
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 013010 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336 (451)
Q Consensus 257 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 336 (451)
-. +.+.+|.-+|++|.+. ..|+..+.|-...++...|++++|..++++....... ++.|...+|-.-...|
T Consensus 185 gg-------ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 185 GG-------EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLG 255 (299)
T ss_pred cc-------hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence 11 1566677777776542 4566666666666666677777777777766655322 3444444444333333
Q ss_pred CH-HHHHHHHHHHHh
Q 013010 337 EI-DKAIEMMRKMQN 350 (451)
Q Consensus 337 ~~-~~A~~~~~~m~~ 350 (451)
.. +-..+.+.+++.
T Consensus 256 kd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 256 KDAEVTERNLSQLKL 270 (299)
T ss_pred CChHHHHHHHHHHHh
Confidence 32 333444445444
No 108
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.03 E-value=0.00019 Score=53.95 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 013010 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287 (451)
Q Consensus 208 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 287 (451)
...|..|...+++...-.+|+.+++.|+. -|+..+|+.++.+.++..... ..+..++-+.+.+|+.|...+++|+.
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~-lPsv~~Yn~VL~Si~~R~lD~---~~ie~kl~~LLtvYqDiL~~~lKP~~ 104 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGIT-LPSVELYNKVLKSIAKRELDS---EDIENKLTNLLTVYQDILSNKLKPND 104 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHccccc---hhHHHHHHHHHHHHHHHHHhccCCcH
Confidence 34556666668888888888888888863 488888888888887765322 23334788899999999999999999
Q ss_pred hhHHHHHHHHHh
Q 013010 288 VAYNCLIDGCCK 299 (451)
Q Consensus 288 ~~~~~li~~~~~ 299 (451)
.||+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.03 E-value=0.00036 Score=56.87 Aligned_cols=97 Identities=8% Similarity=-0.154 Sum_probs=85.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 013010 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (451)
Q Consensus 134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 213 (451)
.+..+...+...|++++|...|+....... .+...|..+..++...|++++|...|+.....+ +.+..++..+..+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~ 101 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQP---WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 355678888999999999999999988763 367789999999999999999999999999854 4578889999999
Q ss_pred HHhcCChHHHHHHHHHhhhCC
Q 013010 214 LCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 214 ~~~~g~~~~a~~~~~~m~~~g 234 (451)
+...|++++|...|+......
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999998765
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.002 Score=56.07 Aligned_cols=160 Identities=14% Similarity=0.061 Sum_probs=111.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 013010 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287 (451)
Q Consensus 208 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 287 (451)
..+-..+.-.|+-+....+........ +-|.......+....+.| ++.+|...+++.... -++|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~d~~ll~~~gk~~~~~g-----------~~~~A~~~~rkA~~l-~p~d~ 134 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY---PKDRELLAAQGKNQIRNG-----------NFGEAVSVLRKAARL-APTDW 134 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC---cccHHHHHHHHHHHHHhc-----------chHHHHHHHHHHhcc-CCCCh
Confidence 444556666777777766666644332 245556666777777777 778888888877653 36677
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 367 (451)
.+|+.+--+|.+.|+++.|..-|.+..+... -+...+|.|.-.|.-.|+.+.|..++......+ .-|...-..+...
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~ 211 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALV 211 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHH
Confidence 8888888888888888888888877776521 145666777777777888888888888777655 4466667777777
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 013010 368 LCEAGRVLEARDFLAELV 385 (451)
Q Consensus 368 ~~~~g~~~~A~~l~~~m~ 385 (451)
....|++++|.++...-.
T Consensus 212 ~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 212 VGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HhhcCChHHHHhhccccc
Confidence 788888888887765433
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.01 E-value=0.00046 Score=59.50 Aligned_cols=129 Identities=10% Similarity=0.017 Sum_probs=104.5
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHH-HHhcCC--H
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV-LGEEGL--V 185 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~-~~~~g~--~ 185 (451)
.++.++++..++..... -+.|...|..+...|...|++++|...+++..+.... +...+..+..+ +...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCCCc
Confidence 45567888888777653 4667889999999999999999999999999988633 66678888776 467777 5
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 013010 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246 (451)
Q Consensus 186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~ 246 (451)
++|.+++++..+.+ +-+..++..+...+...|++++|...|+++.+.. +|+..-+..
T Consensus 127 ~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~---~~~~~r~~~ 183 (198)
T PRK10370 127 PQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN---SPRVNRTQL 183 (198)
T ss_pred HHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCccHHHH
Confidence 99999999999865 2367888888999999999999999999998875 466655443
No 112
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.01 E-value=0.018 Score=56.38 Aligned_cols=384 Identities=11% Similarity=0.041 Sum_probs=223.3
Q ss_pred HHHHHHHhhcCCccccccCCcC----C--CCCCCChhhHHHHHhccChhhh---cCCc-c------cccCCCCCCCChhH
Q 013010 16 QQVLPLMLKNVPFDAKLAASTT----K--TQNPFTIESVADVLKSIPRFFF---QSPR-S------IGRQTGFRHRTPLR 79 (451)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~v~~vl~~~~~~~~---~~~~-w------~~~~~~f~h~~~~~ 79 (451)
.++-.+.++..|-+..+|-+=. . -...+|......|-+-|.+... ..+| | .-.|+...|+..+-
T Consensus 46 ~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tf 125 (835)
T KOG2047|consen 46 NLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTF 125 (835)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHH
Confidence 3445666777776666544210 0 1122244444444443433211 3333 3 34577777777776
Q ss_pred HHHHHHhh---hhhhhhhhhcCcccCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHH
Q 013010 80 QRILKKEA---YNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLK 156 (451)
Q Consensus 80 ~~~l~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 156 (451)
.+.|...| +.--|..++.- -...+-++-++.+++...+ + +...-+-.|..+++.+++++|.+.+.
T Consensus 126 drALraLpvtqH~rIW~lyl~F-------v~~~~lPets~rvyrRYLk---~--~P~~~eeyie~L~~~d~~~eaa~~la 193 (835)
T KOG2047|consen 126 DRALRALPVTQHDRIWDLYLKF-------VESHGLPETSIRVYRRYLK---V--APEAREEYIEYLAKSDRLDEAAQRLA 193 (835)
T ss_pred HHHHHhCchHhhccchHHHHHH-------HHhCCChHHHHHHHHHHHh---c--CHHHHHHHHHHHHhccchHHHHHHHH
Confidence 65555333 22334443321 2224446788999888873 3 33447778899999999999999988
Q ss_pred HHHHcC----CCCCccHHhHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHH
Q 013010 157 DMSRRG----NGELVTTSSVTCLIKVLGEEGLVNE---ALATFYRMKQFRCRPD--VYAYNVVINALCRVGNFNKARFLL 227 (451)
Q Consensus 157 ~m~~~~----~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~ 227 (451)
..+... ...+.+...|..+-+...++-+.-. +.++++.+..+ -+| ...|++|.+-|.+.|.++.|.++|
T Consensus 194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVY 271 (835)
T ss_pred HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 776542 1112355667777777666554433 33444444432 344 467899999999999999999999
Q ss_pred HHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh-----------HHHHHHHHHHHHHHHHHHhcC-----------CCC
Q 013010 228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR-----------KAIRRRIWEANHLFRLMLFKG-----------FVP 285 (451)
Q Consensus 228 ~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~-----------~~~~~~~~~a~~~~~~m~~~~-----------~~~ 285 (451)
++....- .++.-|+.+.++|+.-.....+. +....+++-.+.-|+.+...+ -+-
T Consensus 272 eeai~~v----~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~ 347 (835)
T KOG2047|consen 272 EEAIQTV----MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH 347 (835)
T ss_pred HHHHHhh----eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence 9987653 45566777777776543111000 001113344444454444321 011
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCh-
Q 013010 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP------NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS- 358 (451)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p------~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~- 358 (451)
++..|..-+. +..|+..+-..+|.+.... +.| -...|..+...|-..|+++.|..+|++..+... +.+
T Consensus 348 nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y--~~v~ 422 (835)
T KOG2047|consen 348 NVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY--KTVE 422 (835)
T ss_pred cHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc--cchH
Confidence 2333333222 3456677777788877654 222 235678888899999999999999999887654 222
Q ss_pred ---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC----------CCC-------CHHHHHHHHHHHHhcCCCchHHHHHHH
Q 013010 359 ---SSYTPIIHALCEAGRVLEARDFLAELVDGG----------SVP-------REYTYKLVCDALNAAEEPSLLDDGLRK 418 (451)
Q Consensus 359 ---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------~~p-------~~~t~~~li~~~~~~g~~~~a~~~~~~ 418 (451)
.+|..-...=.++.+++.|+++.+.....- ..| +...|...++..-..|-++.-..++++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 234444444456677888888877654211 111 123455556666667777766677776
Q ss_pred HHHh
Q 013010 419 RIRD 422 (451)
Q Consensus 419 ~~~~ 422 (451)
+++.
T Consensus 503 iidL 506 (835)
T KOG2047|consen 503 IIDL 506 (835)
T ss_pred HHHH
Confidence 6643
No 113
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.0042 Score=56.29 Aligned_cols=299 Identities=12% Similarity=0.098 Sum_probs=144.8
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcC------------CCCCc------
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG------------NGELV------ 167 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~------------~~~~~------ 167 (451)
+-+.|+.++|+..+..+.+. -.++...+-.|...+.-.|.+.+|..+-....+.. .....
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh 144 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFH 144 (557)
T ss_pred HHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHH
Confidence 44567789999999888764 34445555555555555677777766643322210 00000
Q ss_pred -----cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHhhhCCCCCCCCH
Q 013010 168 -----TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN-ALCRVGNFNKARFLLEQMELPGFRCPPDV 241 (451)
Q Consensus 168 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~~~p~~ 241 (451)
+...--+|....-..-.+.+|+++|...... .|+-...|.-+. +|.+..-++-+.++++-..+.- |.++
T Consensus 145 ~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~---pdSt 219 (557)
T KOG3785|consen 145 SSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF---PDST 219 (557)
T ss_pred HHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC---CCcH
Confidence 0001112222222334677888888887764 355555665444 4456666777777777665542 2344
Q ss_pred HHHHHHHHHHHhcCCchhhhHH---HH---------------------HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 013010 242 YTYTILISSYCKYGMQTGCRKA---IR---------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297 (451)
Q Consensus 242 ~~~~~li~~~~~~g~~~~~~~~---~~---------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 297 (451)
.+-|.......+.-.-..+... +. +.-+.|++++-.+.+. -|. .--.|+--|
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYy 295 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYY 295 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeee
Confidence 4444443333322111111100 00 0112222222222110 110 111122234
Q ss_pred HhcCCHHHHHHHHHHH--------------------------------------HhCCCCCCHH-HHHHHHHHHHhcCCH
Q 013010 298 CKTYRIERALELFDDM--------------------------------------NKKGCIPNRV-TYNSFIRYYSVVNEI 338 (451)
Q Consensus 298 ~~~g~~~~a~~~~~~m--------------------------------------~~~g~~p~~~-t~~~li~~~~~~g~~ 338 (451)
.+.++..+|..+.+++ .+.+..-|.. --.++..++.-..++
T Consensus 296 L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 4455555555444443 2222221111 112233333334455
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCCchHHHHHH
Q 013010 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK-LVCDALNAAEEPSLLDDGLR 417 (451)
Q Consensus 339 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~li~~~~~~g~~~~a~~~~~ 417 (451)
++++-.++.++.-.. .-|...| .+..+++..|++.+|.++|-......++ |..+|. .|.++|.++|+++.|.+++-
T Consensus 376 ddVl~YlnSi~sYF~-NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 376 DDVLTYLNSIESYFT-NDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHhc-Ccchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 666666665554332 2333333 4567778888888888888666544444 445554 45678888888887765544
Q ss_pred H
Q 013010 418 K 418 (451)
Q Consensus 418 ~ 418 (451)
+
T Consensus 453 k 453 (557)
T KOG3785|consen 453 K 453 (557)
T ss_pred h
Confidence 3
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.98 E-value=0.0061 Score=62.58 Aligned_cols=144 Identities=14% Similarity=0.065 Sum_probs=94.0
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 013010 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246 (451)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~ 246 (451)
+...+-.|.......|.+++|..+++...+. .|| ......+...+.+.+++++|+..+++..... |-+......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~---p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG---SSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC---CCCHHHHHH
Confidence 4556667777777777777777777777763 454 4445566667777777777777777777665 235556666
Q ss_pred HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326 (451)
Q Consensus 247 li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 326 (451)
+..++.+.| ++++|..+|++....+ +-+..++..+-.++-+.|+.++|...|+...+.- .|....|+
T Consensus 160 ~a~~l~~~g-----------~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~ 226 (694)
T PRK15179 160 EAKSWDEIG-----------QSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLT 226 (694)
T ss_pred HHHHHHHhc-----------chHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHH
Confidence 666777777 7777777777777632 2235666666777777777777777777766542 23444554
Q ss_pred HHH
Q 013010 327 SFI 329 (451)
Q Consensus 327 ~li 329 (451)
.++
T Consensus 227 ~~~ 229 (694)
T PRK15179 227 RRL 229 (694)
T ss_pred HHH
Confidence 443
No 115
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.98 E-value=0.012 Score=59.66 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=48.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH
Q 013010 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL--GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (451)
Q Consensus 145 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 222 (451)
.+++..|......+.++.. +. .|..++.++ .+.|+.++|..+++.....+.. |..|..++-..|-+.++.++
T Consensus 22 ~~qfkkal~~~~kllkk~P----n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHP----NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hHHHHHHHHHHHHHHHHCC----Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3455555555555544431 11 133333333 2345555555555554443322 45555555555555555555
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 223 a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
|..+|++..... |+..-...+..+|.+.+
T Consensus 96 ~~~~Ye~~~~~~----P~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 96 AVHLYERANQKY----PSEELLYHLFMAYVREK 124 (932)
T ss_pred HHHHHHHHHhhC----CcHHHHHHHHHHHHHHH
Confidence 555555554432 44444445555555554
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.98 E-value=0.00076 Score=54.97 Aligned_cols=112 Identities=12% Similarity=0.009 Sum_probs=90.0
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 273 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
.++++..+. .|+ .+..+...+...|++++|...|+...... +.+...|..+-..+...|++++|...|+......
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445554443 343 34456778889999999999999988763 3378888999999999999999999999999876
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 013010 353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393 (451)
Q Consensus 353 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 393 (451)
+.+...+..+-.++...|++++|...|+..++. .|+.
T Consensus 89 --p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~ 125 (144)
T PRK15359 89 --ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYAD 125 (144)
T ss_pred --CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 678888999999999999999999999998874 3543
No 117
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=0.00051 Score=65.97 Aligned_cols=221 Identities=13% Similarity=0.034 Sum_probs=167.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCch
Q 013010 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258 (451)
Q Consensus 179 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~ 258 (451)
+.+.|++.+|.-.|+...+.+ +-+...|--|.......++-..|+..+.+..+.. |-|....-+|.-.|...|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNeg--- 367 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNEG--- 367 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhhh---
Confidence 467899999999999988864 3468889999888888898889999999888775 357888899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHH
Q 013010 259 GCRKAIRRRIWEANHLFRLMLFKGFV--------PDVVAYNCLIDGCCKTYRIERALELFDDMN-KKGCIPNRVTYNSFI 329 (451)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~li 329 (451)
.-.+|+..++.......+ ++...-+. ..+.....+....++|-++. ..+..+|......|-
T Consensus 368 --------~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 368 --------LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred --------hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 677888888887654210 01100000 12222333455666666654 455557888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 013010 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEE 408 (451)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~ 408 (451)
-.|.-.|++++|...|+...... +-|..+||.|-..++...+.++|...|.+.++ +.|+ +....-|.-+|...|.
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhh
Confidence 88889999999999999999876 67888999999999999999999999999987 4565 2333445567889999
Q ss_pred CchHHHHHHHHH
Q 013010 409 PSLLDDGLRKRI 420 (451)
Q Consensus 409 ~~~a~~~~~~~~ 420 (451)
+++|.+.+-..+
T Consensus 514 ykEA~~hlL~AL 525 (579)
T KOG1125|consen 514 YKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHHH
Confidence 998888777665
No 118
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0067 Score=55.06 Aligned_cols=286 Identities=12% Similarity=0.101 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHH-HHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh--cCCHHHH
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCKEMG-IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE--EGLVNEA 188 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A 188 (451)
..+|++++...... .|+-...|.-+ -.|.+..-++-+.+++.-..+.... ++...|.......+ +|+..++
T Consensus 167 YQeAIdvYkrvL~d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd---StiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQD---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD---STIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHhc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC---cHHHHHHHHHHHhhhhccchhHH
Confidence 68999999988743 44555555533 4466778888888888777665322 44444444433333 2322211
Q ss_pred HH------------HHHHHhhCC------------CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCC
Q 013010 189 LA------------TFYRMKQFR------------CRPD-----VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239 (451)
Q Consensus 189 ~~------------~~~~m~~~g------------~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p 239 (451)
.. .-+.+...+ +-|. +..--.|+--|.+.+++.+|..+.+++.- .
T Consensus 241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P------t 314 (557)
T KOG3785|consen 241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP------T 314 (557)
T ss_pred HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC------C
Confidence 10 111111111 1111 12223344557889999999998887652 2
Q ss_pred CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 013010 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV-AYNCLIDGCCKTYRIERALELFDDMNKKGC 318 (451)
Q Consensus 240 ~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 318 (451)
+..-|-.-.-.+...|...+.++ .+.-|.+.|+-.-+++..-|+. .-.++.+.+.-..+++++.-.++..+.--.
T Consensus 315 tP~EyilKgvv~aalGQe~gSre----HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~ 390 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSRE----HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT 390 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHH----HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333332333445555544444 5666666666555554443332 233344444455556666666655554422
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HH
Q 013010 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT-PIIHALCEAGRVLEARDFLAELVDGGSVPREY-TY 396 (451)
Q Consensus 319 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 396 (451)
.-|...|| +.++++..|++.+|+++|-.+....+ -|..+|. .|.+.|.+.+.++-|.+++-.+. ...+.. ..
T Consensus 391 NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i--kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLL 464 (557)
T KOG3785|consen 391 NDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI--KNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLL 464 (557)
T ss_pred CcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh--hhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHH
Confidence 22333332 45566666666666666655443321 2334443 33345556666666655543322 222222 22
Q ss_pred HHHHHHHHhcCCCchHHHHHHHH
Q 013010 397 KLVCDALNAAEEPSLLDDGLRKR 419 (451)
Q Consensus 397 ~~li~~~~~~g~~~~a~~~~~~~ 419 (451)
..+.+-|-+++++=-+.+.++..
T Consensus 465 qlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 465 QLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Confidence 33344455555544444444443
No 119
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.96 E-value=0.00012 Score=54.91 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHhhhCCCCCCCCHHH
Q 013010 173 TCLIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVVINALCRVG--------NFNKARFLLEQMELPGFRCPPDVYT 243 (451)
Q Consensus 173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~~~p~~~~ 243 (451)
..-|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-.++.+|++|...+++ |+..|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lK--P~~et 106 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLK--PNDET 106 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccC--CcHHH
Confidence 3455556666777788888888887777 778888888877776542 234567777888777754 88888
Q ss_pred HHHHHHHHHh
Q 013010 244 YTILISSYCK 253 (451)
Q Consensus 244 ~~~li~~~~~ 253 (451)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877665
No 120
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.93 E-value=1.3e-05 Score=45.96 Aligned_cols=29 Identities=52% Similarity=0.974 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 013010 289 AYNCLIDGCCKTYRIERALELFDDMNKKG 317 (451)
Q Consensus 289 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 317 (451)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 55666666666666666666666665554
No 121
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.92 E-value=1.5e-05 Score=45.75 Aligned_cols=29 Identities=28% Similarity=0.641 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 013010 360 SYTPIIHALCEAGRVLEARDFLAELVDGG 388 (451)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 388 (451)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555554
No 122
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.90 E-value=0.00091 Score=54.62 Aligned_cols=128 Identities=15% Similarity=0.085 Sum_probs=91.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHH
Q 013010 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV--YAYNVVI 211 (451)
Q Consensus 134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li 211 (451)
.|..++..+. .++...+...++.+.+............-.+...+...|++++|...|+........|+. ...-.+.
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 4555555553 888898999999998876443222333344557788899999999999999986522321 2344566
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHH
Q 013010 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277 (451)
Q Consensus 212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~ 277 (451)
..+...|++++|+..++...... .....+....+.|.+.| +.++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~----~~~~~~~~~Gdi~~~~g-----------~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA----FKALAAELLGDIYLAQG-----------DYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc----hHHHHHHHHHHHHHHCC-----------CHHHHHHHHHH
Confidence 77888999999999997754433 45567778888999999 77888887764
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.89 E-value=0.0027 Score=65.09 Aligned_cols=184 Identities=8% Similarity=0.065 Sum_probs=142.2
Q ss_pred CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 013010 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206 (451)
Q Consensus 127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 206 (451)
.++.+...+-.|.....+.|.+++|..+++...+.... +......+...+.+.+++++|+..+++..... +-+...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd---~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~ 156 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD---SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSARE 156 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHH
Confidence 45667888888999999999999999999999998532 56678888999999999999999999999864 234666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 013010 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286 (451)
Q Consensus 207 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 286 (451)
.+.+-.++.+.|++++|..+|++....+ +-+..++..+-..+-..| +.++|...|+...+. ..+.
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~---p~~~~~~~~~a~~l~~~G-----------~~~~A~~~~~~a~~~-~~~~ 221 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQH---PEFENGYVGWAQSLTRRG-----------ALWRARDVLQAGLDA-IGDG 221 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHh-hCcc
Confidence 6777788899999999999999999854 235889999999999999 999999999998764 2344
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIPNRVTYNSFIRYYSVV 335 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li~~~~~~ 335 (451)
...|+..+. ++..-...++.+.-. |...........|..|.+.
T Consensus 222 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 222 ARKLTRRLV------DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred hHHHHHHHH------HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 555655443 333445556665543 3333455566677777665
No 124
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.87 E-value=0.013 Score=58.60 Aligned_cols=220 Identities=10% Similarity=0.038 Sum_probs=152.6
Q ss_pred CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHH
Q 013010 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVY 205 (451)
Q Consensus 127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 205 (451)
.+.-|...|..|.-++...|+++.+-+.|++...--+. ..+.|+.+-..|...|.-..|..++++-....-.| |..
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~---~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG---EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh---hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 34567889999999999999999999999987765433 56679999999999999999999998876643234 444
Q ss_pred HHHHHHHHHHh-cCChHHHHHHHHHhhhC--CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC
Q 013010 206 AYNVVINALCR-VGNFNKARFLLEQMELP--GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282 (451)
Q Consensus 206 ~~~~li~~~~~-~g~~~~a~~~~~~m~~~--g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~ 282 (451)
.+-..-..|.+ .+.+++++.+-.+.... +..-.-....|..+--+|........-...-.....++++.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 44444444543 46677777666665551 1110124456666666665543211111111124567888888887653
Q ss_pred -CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010 283 -FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351 (451)
Q Consensus 283 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (451)
-.|++.-|-++ -|+-.++++.|.+..++..+.+-.-+...|..|...+...+++.+|+.+.+.....
T Consensus 475 ~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 475 PTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred CCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34444444333 36677899999999999998866678999999999999999999999999876654
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.87 E-value=0.0011 Score=53.36 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=85.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 366 (451)
......+...+...|++++|.+.++.+...+ +.+...+..+...|...|++++|..+++...+.+ +.+...+..+-.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHH
Confidence 3455667777888999999999999988764 3367888888889999999999999999988765 566777778888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399 (451)
Q Consensus 367 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 399 (451)
.|...|++++|...++...+. .|+...+..+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence 899999999999999888874 3554444333
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.86 E-value=0.00085 Score=53.95 Aligned_cols=109 Identities=10% Similarity=-0.010 Sum_probs=88.9
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+......+...+...|++++|.+.++.....+. .+...+..+...+...|++++|..+|+...+.+ +.+...+..+
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP---YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 345566778888899999999999999988752 266778899999999999999999999988764 4467788888
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l 247 (451)
...|...|++++|...|+...+.. |+...+..+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 124 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC----GENPEYSEL 124 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc----cccchHHHH
Confidence 889999999999999999988765 555444433
No 127
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.86 E-value=0.00049 Score=58.34 Aligned_cols=105 Identities=20% Similarity=0.267 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc----------------CC
Q 013010 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT----------------YR 302 (451)
Q Consensus 239 p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------------g~ 302 (451)
.+..+|..+++.|.+..... +|.++=....+..|.+-|+.-|..+|+.||+.+=+. .+
T Consensus 45 k~K~~F~~~V~~f~~~~~~R------RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Q 118 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRR------RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQ 118 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCC------cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHH
Confidence 58889999999988763111 126777778888999999999999999999988542 13
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 013010 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE-IDKAIEMMRKMQ 349 (451)
Q Consensus 303 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~A~~~~~~m~ 349 (451)
-+-|.+++++|...|+-||..|+..|++.+.+.+. +.+..++.-.|.
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777665554 233444443333
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.83 E-value=0.0018 Score=61.49 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 013010 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285 (451)
Q Consensus 206 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 285 (451)
....++..+...++++.|..+|+++.+.. |+. ...++..+...+ +-.+|.+++++..+. .+-
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~----pev--~~~LA~v~l~~~-----------~E~~AI~ll~~aL~~-~p~ 232 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD----PEV--AVLLARVYLLMN-----------EEVEAIRLLNEALKE-NPQ 232 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC----CcH--HHHHHHHHHhcC-----------cHHHHHHHHHHHHHh-CCC
Confidence 34556667777889999999999999875 664 345777777766 666888888887754 234
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
+....+.-...|.+.++++.|.++.+++.+. .| +..+|..|..+|...|+++.|+..++.+.-
T Consensus 233 d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 233 DSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 6667777777888999999999999998886 56 467999999999999999999999987763
No 129
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.041 Score=53.50 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=80.7
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHH--HHHHHH--h
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC--LIKVLG--E 181 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~--li~~~~--~ 181 (451)
+...+++++|+.....+.. +.+.+...+..=+.++.+.+++++|..+.+.-... .+++. +=.+|| +
T Consensus 22 ~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--------~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--------LVINSFFFEKAYCEYR 91 (652)
T ss_pred hccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--------hhcchhhHHHHHHHHH
Confidence 3456778999999999885 34556667777788889999999999665442211 12222 345565 5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 013010 182 EGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGF 235 (451)
Q Consensus 182 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 235 (451)
.+..++|+..++ |+.++ ..+-..-...+.+.|++++|.++|+.+.+.+.
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 789999999988 33333 33555556678889999999999999966553
No 130
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.79 E-value=0.017 Score=52.33 Aligned_cols=254 Identities=12% Similarity=0.049 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHH-HHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhH------------HHHHHH
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCK-EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV------------TCLIKV 178 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~------------~~li~~ 178 (451)
-+.|+.=|.... ..+||...-. .-...+.+.|.++.|..=|+.+.+...........+ ...+..
T Consensus 88 sk~al~Dl~rVl---elKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s 164 (504)
T KOG0624|consen 88 SKAALQDLSRVL---ELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS 164 (504)
T ss_pred CccchhhHHHHH---hcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444444443 2455543221 233567889999999999999988754322222222 233555
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCch
Q 013010 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258 (451)
Q Consensus 179 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~ 258 (451)
+.-.|+...|+.....+.+-. +-|...|..-..+|...|++..|..=+....+... .++.++.-+-..+...|
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~---DnTe~~ykis~L~Y~vg--- 237 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ---DNTEGHYKISQLLYTVG--- 237 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc---cchHHHHHHHHHHHhhh---
Confidence 677899999999999988742 34888888888999999999999887777666543 47777777788888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCCHhh----HHHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 013010 259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVA----YNCL---------IDGCCKTYRIERALELFDDMNKKGCIPNRVTY 325 (451)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l---------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 325 (451)
+.+.++...++-.+. .||... |..| +......++|.++.+..+...+..-.....+|
T Consensus 238 --------d~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~ 307 (504)
T KOG0624|consen 238 --------DAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRY 307 (504)
T ss_pred --------hHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceee
Confidence 666666666665543 444322 1111 11234456777777777766665322123333
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010 326 ---NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 326 ---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
..+-.+|...+++.+|++...+..... +.|+.++.--..+|.-...+++|+.=|+...+.
T Consensus 308 ~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 308 NGFRVLCTCYREDEQFGEAIQQCKEVLDID--PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eeeheeeecccccCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 344556667788999999998888754 455777777777887777888888877776654
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.02 Score=49.76 Aligned_cols=186 Identities=13% Similarity=0.096 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHhh---CC-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH-HHHhcCC
Q 013010 183 GLVNEALATFYRMKQ---FR-CRPDVYA-YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS-SYCKYGM 256 (451)
Q Consensus 183 g~~~~A~~~~~~m~~---~g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~-~~~~~g~ 256 (451)
.+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|...++++...- |...-...|=. -+-..|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f----p~S~RV~~lkam~lEa~~- 100 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF----PGSKRVGKLKAMLLEATG- 100 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC----CCChhHHHHHHHHHHHhh-
Confidence 345555555555533 12 3444433 3344455556666667777766665543 22211111111 112223
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 013010 257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336 (451)
Q Consensus 257 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 336 (451)
.+++|.++++...+.. +.|..++.-=+...-..|+--+|++-+.+..+. +.-|...|.-+-..|...|
T Consensus 101 ----------~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 101 ----------NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred ----------chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHh
Confidence 5667777777766554 445555555555555556655666666665554 2346777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHhC
Q 013010 337 EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG---RVLEARDFLAELVDG 387 (451)
Q Consensus 337 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~ 387 (451)
++++|.-.++++.-.. +.++..|..+.+.+.-.| +..-|.++|.+.++.
T Consensus 169 ~f~kA~fClEE~ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7777777777776543 344444445555443333 345566666666553
No 132
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.78 E-value=0.0012 Score=51.66 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=80.2
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHH
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVV 210 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l 210 (451)
.++-.+...+.+.|++++|.+.+..+.............+..+...+.+.|+++.|...|+.+.... .......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3456677888889999999999999987753322234567778899999999999999999988742 11225667778
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC
Q 013010 211 INALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
..++...|+.++|.+.++++....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 888899999999999999998875
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.77 E-value=0.019 Score=54.53 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=73.0
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC-HhhHHHH
Q 013010 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD-VVAYNCL 293 (451)
Q Consensus 215 ~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l 293 (451)
...|++++|++.+..+...- |-|..-.......+.+.+ +..+|.+.++.+... .|+ ....-.+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~---P~N~~~~~~~~~i~~~~n-----------k~~~A~e~~~kal~l--~P~~~~l~~~~ 380 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ---PDNPYYLELAGDILLEAN-----------KAKEAIERLKKALAL--DPNSPLLQLNL 380 (484)
T ss_pred HHhcccchHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhc--CCCccHHHHHH
Confidence 34555666666666655542 234444445555556665 556666666666543 343 2333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC
Q 013010 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373 (451)
Q Consensus 294 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 373 (451)
-.+|.+.|++.+|..+++...... +-|+..|..|-++|...|+..++..-..+ +|...|+
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~ 440 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGR 440 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCC
Confidence 455666666666666666555442 22556666666666666665555544333 2344555
Q ss_pred HHHHHHHHHHHHh
Q 013010 374 VLEARDFLAELVD 386 (451)
Q Consensus 374 ~~~A~~l~~~m~~ 386 (451)
++.|...+....+
T Consensus 441 ~~~A~~~l~~A~~ 453 (484)
T COG4783 441 LEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555543
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.77 E-value=0.0014 Score=62.13 Aligned_cols=123 Identities=17% Similarity=0.139 Sum_probs=100.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013010 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368 (451)
Q Consensus 289 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 368 (451)
...+|+..+...++++.|.++++++.+.. |+ ....++..+...++-.+|.+++++..+.. +-+......-...|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34556666777899999999999999884 55 44457888888899999999999998765 45666666677778
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCCchHHHHHHHH
Q 013010 369 CEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEEPSLLDDGLRKR 419 (451)
Q Consensus 369 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~ 419 (451)
.+.++++.|.++.+++.+. .|+ ..+|..|.++|.+.|+++.|...+..+
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 8999999999999999874 465 459999999999999999998777755
No 135
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.76 E-value=0.00031 Score=59.49 Aligned_cols=87 Identities=22% Similarity=0.308 Sum_probs=62.3
Q ss_pred cHHhHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHHH
Q 013010 168 TTSSVTCLIKVLGE-----EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV----------------GNFNKARFL 226 (451)
Q Consensus 168 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~a~~~ 226 (451)
+-.+|..++..|.+ .|.++-....+..|.+.|+.-|..+|+.||+.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 33445555555543 356666666667777777777777777777765442 234679999
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 013010 227 LEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (451)
Q Consensus 227 ~~~m~~~g~~~~p~~~~~~~li~~~~~~g~ 256 (451)
+++|...|+- ||..|+..+++.+++.+.
T Consensus 126 L~qME~~gV~--Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVM--PDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCC--CcHHHHHHHHHHhccccH
Confidence 9999999975 999999999999998883
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.73 E-value=0.073 Score=54.31 Aligned_cols=229 Identities=14% Similarity=0.032 Sum_probs=154.2
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHH--HHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010 110 LGLNKATEFYHWVERFFDFFHNEMTCKEMGIV--FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187 (451)
Q Consensus 110 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 187 (451)
+..++|+.-...+.++++-.+ |...+.+ +.+.|+.++|..+++.....+.. |..|...+-.+|-..++.++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~---D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKGT---DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC---chHHHHHHHHHHHHHhhhhH
Confidence 447899999888887643332 4444544 46889999999988887665533 77899999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCc-hhhhHHHHH
Q 013010 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ-TGCRKAIRR 266 (451)
Q Consensus 188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~-~~~~~~~~~ 266 (451)
|..+|+...+. .|+......+..+|.|.+++.+-.+.--+|-+. .|-+.+.+-++++.+...-.. +.... .-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~---~pk~~yyfWsV~Slilqs~~~~~~~~~--~i 168 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN---FPKRAYYFWSVISLILQSIFSENELLD--PI 168 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCcccchHHHHHHHHHHhccCCccccc--ch
Confidence 99999999874 577777778888999999887655544444433 134556666666666554321 11111 01
Q ss_pred HHHHHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013010 267 RIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRIERALELF-DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 344 (451)
-+.-|.+.++.+.+.+-+. +..-.-.-...+-..|.+++|.+++ ....+.-..-+...-+--+..+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 3445667777776543111 1222222233445678899999998 4454443333555556778888889999999999
Q ss_pred HHHHHhcC
Q 013010 345 MRKMQNLN 352 (451)
Q Consensus 345 ~~~m~~~~ 352 (451)
-.++...+
T Consensus 249 ~~~Ll~k~ 256 (932)
T KOG2053|consen 249 SSRLLEKG 256 (932)
T ss_pred HHHHHHhC
Confidence 99988876
No 137
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.01 Score=59.67 Aligned_cols=242 Identities=14% Similarity=0.103 Sum_probs=146.0
Q ss_pred CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcC--------CCCCccHHhHHHH
Q 013010 104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG--------NGELVTTSSVTCL 175 (451)
Q Consensus 104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--------~~~~~~~~~~~~l 175 (451)
+.|...|+.+.|..-.+.+. +...|..|...|.+..+++-|.-.+-.|.... .. .++ .+-.-+
T Consensus 736 SfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~-e~eakv 806 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE-EDEAKV 806 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc-chhhHH
Confidence 44667788888888766665 55789999999999998888877776665421 00 011 111223
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 176 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
.-.....|.+++|..+|.+-+. |..|-..|-..|.+++|.++-+.--+- --..||......+-..+
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi-----HLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI-----HLRNTYYNYAKYLEARR 872 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce-----ehhhhHHHHHHHHHhhc
Confidence 3334567899999999988765 334445677789999999887643222 23356766666666677
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhc--------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013010 256 MQTGCRKAIRRRIWEANHLFRLMLFK--------GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327 (451)
Q Consensus 256 ~~~~~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 327 (451)
+..+|.+...+--..|.++++-+.+. .-..|...|.-.-.-+-..|+++.|+.+|...++ |-+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 44444443322222333343333221 0012333344333444456777777777766543 444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384 (451)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 384 (451)
+++..|-.|+.++|-++-++- -|....-.|.+.|-..|++.+|..+|.+.
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 556666677777777766542 23445556667777777777777777654
No 138
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.005 Score=54.54 Aligned_cols=232 Identities=16% Similarity=0.097 Sum_probs=139.8
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH
Q 013010 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (451)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 222 (451)
-..+++..+..++++....| +..+.+.......+.|+++.|.+-|+...+.+---....||..+.. .+.|+++.
T Consensus 123 Yse~Dl~g~rsLveQlp~en-----~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyas 196 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPSEN-----EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYAS 196 (459)
T ss_pred cccccCcchHHHHHhccCCC-----ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHH
Confidence 35678888888888776544 4444555555567899999999999999886544567889887754 46788999
Q ss_pred HHHHHHHhhhCCCCCCC-----------CHH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc-CCCCC
Q 013010 223 ARFLLEQMELPGFRCPP-----------DVY----TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPD 286 (451)
Q Consensus 223 a~~~~~~m~~~g~~~~p-----------~~~----~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~-~~~~~ 286 (451)
|+++..+..++|++-.| |+. +...-+++....-+...+.+.-.++++.|.+.+..|.-+ .-..|
T Consensus 197 ALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elD 276 (459)
T KOG4340|consen 197 ALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELD 276 (459)
T ss_pred HHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCC
Confidence 99999999988764222 211 111122222222222222222223777888887777532 23456
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 366 (451)
.+|...+.-.-. .+++.+..+-+.-+...+- .-..||..++-.||+..-++.|-.++-+-......-.+...|+.| +
T Consensus 277 PvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LL-d 353 (459)
T KOG4340|consen 277 PVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLL-D 353 (459)
T ss_pred chhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHH-H
Confidence 777665543222 2445555555555555432 246788888889999988888888886643322212344444433 3
Q ss_pred HHHH-cCCHHHHHHHHHH
Q 013010 367 ALCE-AGRVLEARDFLAE 383 (451)
Q Consensus 367 ~~~~-~g~~~~A~~l~~~ 383 (451)
++.- .-..++|.+-++.
T Consensus 354 aLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 354 ALITCQTAPEEAFKKLDG 371 (459)
T ss_pred HHHhCCCCHHHHHHHHHH
Confidence 3333 3345555544443
No 139
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.66 E-value=0.083 Score=53.04 Aligned_cols=299 Identities=15% Similarity=0.057 Sum_probs=176.7
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh-cCC
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE-EGL 184 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~-~g~ 184 (451)
..+.|.+..+-+.|+.... +.......|+.+...|...|.-..|..+++.-......| .+...+-..-..|.+ .+.
T Consensus 333 l~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p-s~~s~~Lmasklc~e~l~~ 409 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP-SDISVLLMASKLCIERLKL 409 (799)
T ss_pred HHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC-CcchHHHHHHHHHHhchhh
Confidence 4456778888888888763 455567789999999999999888998887765543222 223233333333433 466
Q ss_pred HHHHHHHHHHHhh--CC--CCCCHHHHHHHHHHHHhcC-----------ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 013010 185 VNEALATFYRMKQ--FR--CRPDVYAYNVVINALCRVG-----------NFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (451)
Q Consensus 185 ~~~A~~~~~~m~~--~g--~~p~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~ 249 (451)
+++++++-.+... .+ -......|..+.-+|...- ...++++.+++..+.+.. .|++.-|-++-.
T Consensus 410 ~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~ 488 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQY 488 (799)
T ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 6666666555544 11 1223445555544444321 134566777776665532 355544444433
Q ss_pred HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCC----------
Q 013010 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK-KGC---------- 318 (451)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~---------- 318 (451)
+ ..+ +++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+...+ .|.
T Consensus 489 A--~~R-----------~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 489 A--EQR-----------QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred H--HHH-----------hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 3 333 6677777777766654455666666666666666666666665554321 111
Q ss_pred --------------------------------------------------------------------------------
Q 013010 319 -------------------------------------------------------------------------------- 318 (451)
Q Consensus 319 -------------------------------------------------------------------------------- 318 (451)
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence
Q ss_pred ---CC--CH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010 319 ---IP--NR------VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 319 ---~p--~~------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
.| +. ..|......+.+.++.++|.-.+.+..+.. ...+..|...-..+...|..++|.+.|.....
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~- 712 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA- 712 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh-
Confidence 00 00 011223334455566666666666665544 34444555555566677888888888877665
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCCchHHH--HHHHHHHhchH
Q 013010 388 GSVPR-EYTYKLVCDALNAAEEPSLLDD--GLRKRIRDGIE 425 (451)
Q Consensus 388 g~~p~-~~t~~~li~~~~~~g~~~~a~~--~~~~~~~~g~~ 425 (451)
+.|+ .....++...+.+.|+...+.. .+..+++.+..
T Consensus 713 -ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 713 -LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred -cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 4454 5577888999999999888877 78877765543
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.65 E-value=0.013 Score=61.06 Aligned_cols=211 Identities=8% Similarity=0.016 Sum_probs=103.5
Q ss_pred chhhhcCHHHHHHHHHHHhhcCCCCCCH-HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC----------------Cc
Q 013010 105 PQKVTLGLNKATEFYHWVERFFDFFHNE-MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE----------------LV 167 (451)
Q Consensus 105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----------------~~ 167 (451)
.+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+.+..+ .+...-... ..
T Consensus 40 ~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~ 114 (906)
T PRK14720 40 AYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGE 114 (906)
T ss_pred HHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhh
Confidence 366677789999998866643 4443 2333344466666665555444 222211000 00
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (451)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l 247 (451)
+...+..+..+|-+.|+.++|.++|+++.+.. +-|+.+.|.+...|... ++++|++++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 11234444444555555555555555555544 23445555555555555 555555554443322
Q ss_pred HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH
Q 013010 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK-GCIPNRVTYN 326 (451)
Q Consensus 248 i~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~ 326 (451)
|.... ++.++.++|.++.... ..+.+.-..+.+.+... |..--..++-
T Consensus 179 ---~i~~k-----------q~~~~~e~W~k~~~~~-----------------~~d~d~f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 179 ---FIKKK-----------QYVGIEEIWSKLVHYN-----------------SDDFDFFLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred ---HHhhh-----------cchHHHHHHHHHHhcC-----------------cccchHHHHHHHHHHhhhccchhHHHHH
Confidence 22222 3334444444443321 11222222222222221 2222344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 013010 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369 (451)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 369 (451)
.+-..|...++++++..+++.+.+.. .-|.....-++..|.
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence 56666777777777777777777765 345556666666665
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.63 E-value=0.0011 Score=54.14 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=87.5
Q ss_pred hcCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010 109 TLGLNKATEFYHWVERFFDFFH-NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 187 (451)
.++..++...++.+...++-.+ .....-.+...+...|++++|...|+.+......+.......-.|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4567788888888886522211 122333355778889999999999999999763332233345567788889999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 013010 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230 (451)
Q Consensus 188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 230 (451)
|+..++...... .....+......|.+.|+.++|...|+..
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999998755433 34566778889999999999999999763
No 142
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.088 Score=51.29 Aligned_cols=286 Identities=14% Similarity=0.082 Sum_probs=155.4
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCC-------------------------
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGN------------------------- 163 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~------------------------- 163 (451)
.+.+++|+..++..... |..+...-...+-+.|++++|.++|+.+.+.+.
T Consensus 92 lnk~Dealk~~~~~~~~-----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRL-----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred cccHHHHHHHHhccccc-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 34467777766633211 233444455667778888888888888755421
Q ss_pred CCCccHHhHHHHH---HHHHhcCCHHHHHHHHHHHhhCC-------------CCCCHHHHH-HHHHHHHhcCChHHHHHH
Q 013010 164 GELVTTSSVTCLI---KVLGEEGLVNEALATFYRMKQFR-------------CRPDVYAYN-VVINALCRVGNFNKARFL 226 (451)
Q Consensus 164 ~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~~~~-~li~~~~~~g~~~~a~~~ 226 (451)
.|.....+|..+- ..+...|++..|+++++....-+ +.-...+.. -+..++-..|+-++|.++
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 1112233455444 34556899999999998882211 111112221 233455678999999999
Q ss_pred HHHhhhCCCCCCCCHHH----HHHHHHHHHhcCCchhh----------------hHHHH---------------------
Q 013010 227 LEQMELPGFRCPPDVYT----YTILISSYCKYGMQTGC----------------RKAIR--------------------- 265 (451)
Q Consensus 227 ~~~m~~~g~~~~p~~~~----~~~li~~~~~~g~~~~~----------------~~~~~--------------------- 265 (451)
+....+... +|... -|.|+..-....-.++. ...+.
T Consensus 247 y~~~i~~~~---~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 247 YVDIIKRNP---ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHhcC---CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 988887652 34322 22222211111111100 00000
Q ss_pred -------------------------------HHHHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHH-
Q 013010 266 -------------------------------RRIWEANHLFRLMLFKGFVPD--VVAYNCLIDGCCKTYRIERALELFD- 311 (451)
Q Consensus 266 -------------------------------~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~- 311 (451)
.....+.+++...-+. .|. ..+.-+.+......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0122222233222221 122 1223334445567788888888888
Q ss_pred -------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCChh----hHHHHHHHHHHcCCHHHHHH
Q 013010 312 -------DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSS----SYTPIIHALCEAGRVLEARD 379 (451)
Q Consensus 312 -------~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~----~~~~li~~~~~~g~~~~A~~ 379 (451)
.+.+.+..|-. ...+...|.+.++-+.|..++++....-.. .+... ++.-+..--.+.|+.++|..
T Consensus 402 ~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 402 FLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 56666655544 444555566666666666666654432110 12222 23333333356799999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 013010 380 FLAELVDGGSVPREYTYKLVCDALNAAE 407 (451)
Q Consensus 380 l~~~m~~~g~~p~~~t~~~li~~~~~~g 407 (451)
+++++.+.. ++|..+...++.+|++..
T Consensus 480 ~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 480 LLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 999998753 467888888999998765
No 143
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.11 Score=53.93 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=111.7
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
|.......+.++...+-..+..++++++.-.+-....+...-|.||-...+. +..++.+..+++-..+. |++
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~i------ 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PDI------ 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hhH------
Confidence 4555566677777777777888887777654422222333334444443332 33344444444443221 111
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCC--------------------CCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 013010 211 INALCRVGNFNKARFLLEQMELPGF--------------------RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~--------------------~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~ 270 (451)
...+...+-+++|..+|+.....+. +| -....|+.+..+-.+.| .+.+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~-n~p~vWsqlakAQL~~~-----------~v~d 1122 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC-NEPAVWSQLAKAQLQGG-----------LVKD 1122 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh-CChHHHHHHHHHHHhcC-----------chHH
Confidence 1112223334444444433211000 00 12235556666655555 5555
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 271 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
|.+-|-+. -|...|.-++....+.|.+++-.+.+...++....|... +.||-+|++.+++.+..+++.
T Consensus 1123 AieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---- 1190 (1666)
T KOG0985|consen 1123 AIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---- 1190 (1666)
T ss_pred HHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc----
Confidence 55544222 256677788888888888888887777777766665543 467777888877776655541
Q ss_pred cCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 013010 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381 (451)
Q Consensus 351 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 381 (451)
.||......+-+-|...|.++.|.-+|
T Consensus 1191 ----gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1191 ----GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred ----CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 244444444444444444444444333
No 144
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.03 Score=57.69 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHH
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 191 (451)
.++|..+|+... .+....+.|+.- -++.+.|.++-++.. ...+|+.+..+-.+.|.+.+|.+-
T Consensus 1064 yEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~n--------~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERCN--------EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred HHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhhC--------ChHHHHHHHHHHHhcCchHHHHHH
Confidence 456666555432 133444444432 345555555544321 334688888888888888888877
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHH
Q 013010 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA 271 (451)
Q Consensus 192 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a 271 (451)
|-+. -|+..|.-++....+.|.+++..+++...++.... |. .=+.||-+|++.+ ++.+.
T Consensus 1127 yika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E--~~--id~eLi~AyAkt~-----------rl~el 1185 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE--PY--IDSELIFAYAKTN-----------RLTEL 1185 (1666)
T ss_pred HHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC--cc--chHHHHHHHHHhc-----------hHHHH
Confidence 6443 36778889999999999999998888777766532 43 4457888999888 55554
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013010 272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344 (451)
Q Consensus 272 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 344 (451)
+++. .-||......+-+-|...|.++.|.-+|. +...|..|...+...|++..|...
T Consensus 1186 E~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1186 EEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4333 13555555666666666666666655554 233455555555555555555443
No 145
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.082 Score=53.52 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHH
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 191 (451)
+++|+.+|+...+ |..|=..|-..|.+++|.++-+.--+... ..||..-..-+-..++.+.|++.
T Consensus 816 lEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL-----r~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 816 LEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL-----RNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh-----hhhHHHHHHHHHhhccHHHHHHH
Confidence 5666666666543 33344455567777777777654333322 23566656656667788888877
Q ss_pred HHHHhh----------CC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----------CCC------
Q 013010 192 FYRMKQ----------FR---------CRPDVYAYNVVINALCRVGNFNKARFLLEQMELP----------GFR------ 236 (451)
Q Consensus 192 ~~~m~~----------~g---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------g~~------ 236 (451)
|++.-. .. -..|...|.-....+-..|+.|.|+.+|...++. |..
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH
Confidence 765421 11 0124444444444445578888888887765432 100
Q ss_pred --CCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010 237 --CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279 (451)
Q Consensus 237 --~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~ 279 (451)
-.-|..+...|.+.|-..| ++.+|..+|.+..
T Consensus 961 A~esgd~AAcYhlaR~YEn~g-----------~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 961 AEESGDKAACYHLARMYENDG-----------DVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhcccHHHHHHHHHHhhhhH-----------HHHHHHHHHHHHH
Confidence 0125556667777888777 7777777776553
No 146
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.51 E-value=0.0092 Score=59.19 Aligned_cols=138 Identities=15% Similarity=0.131 Sum_probs=86.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 013010 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217 (451)
Q Consensus 138 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 217 (451)
.+.+....+.+.+|..+++.+...... +.-|..+..-|+..|+++.|.++|.+. ..++-.|..|.++
T Consensus 738 aieaai~akew~kai~ildniqdqk~~----s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~ 804 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTA----SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKA 804 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccc----cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcc
Confidence 344455667788888888777766532 223666777788888888888887553 2345567778888
Q ss_pred CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 013010 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC 297 (451)
Q Consensus 218 g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 297 (451)
|+|+.|.++-.+..... .....|-+-..-+-+.| ++.+|+++|-... .|+. -|..|
T Consensus 805 ~kw~da~kla~e~~~~e----~t~~~yiakaedldehg-----------kf~eaeqlyiti~----~p~~-----aiqmy 860 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECHGPE----ATISLYIAKAEDLDEHG-----------KFAEAEQLYITIG----EPDK-----AIQMY 860 (1636)
T ss_pred ccHHHHHHHHHHhcCch----hHHHHHHHhHHhHHhhc-----------chhhhhheeEEcc----CchH-----HHHHH
Confidence 88888888766554221 34455555555566666 6666666664332 2332 34556
Q ss_pred HhcCCHHHHHHHHHH
Q 013010 298 CKTYRIERALELFDD 312 (451)
Q Consensus 298 ~~~g~~~~a~~~~~~ 312 (451)
-+.|..++..++...
T Consensus 861 dk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 861 DKHGLDDDMIRLVEK 875 (1636)
T ss_pred HhhCcchHHHHHHHH
Confidence 666666666665554
No 147
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.50 E-value=0.008 Score=59.57 Aligned_cols=168 Identities=15% Similarity=0.105 Sum_probs=98.4
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 290 (451)
+.+..++..|.+|+.+++.+..+.. -..-|..+.+.|+..| +++.|+++|.+.- .+
T Consensus 739 ieaai~akew~kai~ildniqdqk~----~s~yy~~iadhyan~~-----------dfe~ae~lf~e~~---------~~ 794 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT----ASGYYGEIADHYANKG-----------DFEIAEELFTEAD---------LF 794 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc----ccccchHHHHHhccch-----------hHHHHHHHHHhcc---------hh
Confidence 3444556777788888887776652 2334666777888888 7888888875432 34
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q 013010 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370 (451)
Q Consensus 291 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 370 (451)
+--|..|.+.|+|+.|.++-.+... -......|-.-..-+-+.|++.+|.+++-.+ | .|+ ..|..|-+
T Consensus 795 ~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti---~--~p~-----~aiqmydk 862 (1636)
T KOG3616|consen 795 KDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI---G--EPD-----KAIQMYDK 862 (1636)
T ss_pred HHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc---c--Cch-----HHHHHHHh
Confidence 5567788888888888887666542 2334555555555556667766666665332 1 343 23455666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 013010 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR 417 (451)
Q Consensus 371 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 417 (451)
.|..+..+++..+-.-. .-..|-..+..-|...|++..|++.+-
T Consensus 863 ~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 863 HGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 66666665554432110 012244445555566666655544443
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.48 E-value=0.0028 Score=46.42 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 013010 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369 (451)
Q Consensus 290 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 369 (451)
+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++...... ..+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHH
Confidence 4455666777888888888888876652 2234666777777788888888888888877654 344457777777788
Q ss_pred HcCCHHHHHHHHHHHHh
Q 013010 370 EAGRVLEARDFLAELVD 386 (451)
Q Consensus 370 ~~g~~~~A~~l~~~m~~ 386 (451)
..|++++|...+....+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 88888888888777654
No 149
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.46 E-value=0.0072 Score=50.92 Aligned_cols=118 Identities=12% Similarity=0.079 Sum_probs=83.1
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
....+..+...+...|++++|...|++..+....+......+..+...+.+.|++++|...+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345677788888999999999999999987654332234678889999999999999999999998853 2246666777
Q ss_pred HHHHHhcCC--------------hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 211 INALCRVGN--------------FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 211 i~~~~~~g~--------------~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
..++...|+ +++|.+++++....+ |+. |..++..+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~----p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA----PNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC----chh--HHHHHHHHHhcC
Confidence 777777776 345555555555433 332 445555554444
No 150
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.46 E-value=0.0042 Score=56.85 Aligned_cols=131 Identities=20% Similarity=0.297 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC
Q 013010 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284 (451)
Q Consensus 205 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 284 (451)
.+|-.+|+..-+.+.++.|.++|.+.++.+. +..++....+++..++. + +.+.|.++|+...+. +.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~-~-----------d~~~A~~Ife~glk~-f~ 67 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCN-K-----------DPKRARKIFERGLKK-FP 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTC-S------------HHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhC-C-----------CHHHHHHHHHHHHHH-CC
Confidence 3555666666666666666666666664432 12333333333332221 2 444566666665543 34
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR----VTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351 (451)
Q Consensus 285 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (451)
.+...|...+..+.+.++.+.|..+|+..... .|.. ..|...+..=.+.|+++.+..+.+++.+.
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45555666666666666666666666665544 2222 36666666666666666666666666654
No 151
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.12 Score=49.73 Aligned_cols=89 Identities=9% Similarity=-0.049 Sum_probs=55.9
Q ss_pred CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010 104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183 (451)
Q Consensus 104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g 183 (451)
++.-..++++.|+..|-..... -++|...|..=..+|+..|++++|.+=-.+-.+... .-...|+-.-.++.-.|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p---~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP---DWAKGYSRKGAALFGLG 84 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC---chhhHHHHhHHHHHhcc
Confidence 3344566777777777776632 234556666677777777777777665555444431 13445666666666677
Q ss_pred CHHHHHHHHHHHhh
Q 013010 184 LVNEALATFYRMKQ 197 (451)
Q Consensus 184 ~~~~A~~~~~~m~~ 197 (451)
++++|..-|.+-.+
T Consensus 85 ~~~eA~~ay~~GL~ 98 (539)
T KOG0548|consen 85 DYEEAILAYSEGLE 98 (539)
T ss_pred cHHHHHHHHHHHhh
Confidence 77777777766555
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.42 E-value=0.003 Score=46.27 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=73.3
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 013010 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214 (451)
Q Consensus 135 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 214 (451)
+..+...+...|++++|...++...+.... +...+..+...+...+++++|.+.|+...+.. +.+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 455667777889999999999888776422 33567778888888899999999998887754 33446778888888
Q ss_pred HhcCChHHHHHHHHHhhhC
Q 013010 215 CRVGNFNKARFLLEQMELP 233 (451)
Q Consensus 215 ~~~g~~~~a~~~~~~m~~~ 233 (451)
...|+++.|...+......
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 8889999999888887654
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.36 E-value=0.08 Score=47.27 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=30.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHH---HHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDV-YAY---NVVINALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 175 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
....+...|++++|.+.|+++...- |+. ... -.+..++.+.+++++|...+++..+.-
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3334445566666666666665532 221 221 233455566666666666666665543
No 154
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.35 E-value=0.028 Score=54.01 Aligned_cols=150 Identities=7% Similarity=0.069 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMR 346 (451)
Q Consensus 268 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (451)
.+.....+++....-..--+-+|...|+.-.+..-+..|..+|.++.+.+..+ +...++++|..|| .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44455555555543222234678888888888888999999999999998888 7888899999887 577889999998
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR--EYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
-=.+.. .-++.--...++-+...++-..|..+|++.+..++.|+ ...|..+|+-=..-|++..+.++-+++.
T Consensus 426 LGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 755543 12333445677788888999999999999998877766 4789999999999999997777666655
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.32 E-value=0.011 Score=46.08 Aligned_cols=100 Identities=12% Similarity=-0.021 Sum_probs=79.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRC--RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (451)
Q Consensus 171 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li 248 (451)
++..+...+.+.|++++|.+.|+.+.+..- ......+..+..++.+.|+++.|.+.|+.+....-..+....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 467778888999999999999999987431 112456777889999999999999999998875411112356788888
Q ss_pred HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281 (451)
Q Consensus 249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~ 281 (451)
.++.+.| +.++|...++++.+.
T Consensus 84 ~~~~~~~-----------~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELG-----------DKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhC-----------ChHHHHHHHHHHHHH
Confidence 8899998 889999999998876
No 156
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.30 E-value=0.14 Score=49.41 Aligned_cols=175 Identities=13% Similarity=0.116 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHH
Q 013010 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~ 264 (451)
.+.....++++...-..--..+|...|+..-+..-++.|..+|.+.++.+.. +-++.++++++.-||..
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~-~hhVfVa~A~mEy~csk---------- 415 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT-RHHVFVAAALMEYYCSK---------- 415 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC-cchhhHHHHHHHHHhcC----------
Confidence 5556667776665432223466777788778888888888888888888764 23778888888888765
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 013010 265 RRRIWEANHLFRLMLFKGFVPDV-VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN--RVTYNSFIRYYSVVNEIDKA 341 (451)
Q Consensus 265 ~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A 341 (451)
+..-|.++|+-=.+. -+|. .--...++-+...++-..+..+|+.....++.|| ...|..+|..=++-|++..+
T Consensus 416 --D~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 416 --DKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred --ChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 566788888754332 1233 3335667777778888888888888887766664 47788888888888888888
Q ss_pred HHHHHHHHhcCC--CCCChhhHHHHHHHHHHcCCH
Q 013010 342 IEMMRKMQNLNH--GVPTSSSYTPIIHALCEAGRV 374 (451)
Q Consensus 342 ~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~ 374 (451)
.++-+++..... ..+....-..+++-|.-.+..
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 888877765432 123333444555556555543
No 157
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.13 Score=49.64 Aligned_cols=220 Identities=14% Similarity=0.075 Sum_probs=145.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~ 251 (451)
...+.++.-+..++..|++-+....+.. -++.-++..-.+|...|.+..+...-+...+.|.. ...-|+.+-.++
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre---~rad~klIak~~ 301 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE---LRADYKLIAKAL 301 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH---HHHHHHHHHHHH
Confidence 4456677777788888999888888754 45556677777888889888888877777776643 445566555555
Q ss_pred HhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhh-------------------------HHHHHHHHHhcCCHHHH
Q 013010 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA-------------------------YNCLIDGCCKTYRIERA 306 (451)
Q Consensus 252 ~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------------------------~~~li~~~~~~g~~~~a 306 (451)
.+.|.--.-+ ++++.+...|.+....-..||..+ .-.--+.+.+.|++..|
T Consensus 302 ~r~g~a~~k~----~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 302 ARLGNAYTKR----EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred HHhhhhhhhH----HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 5533211111 244444444444332222221111 11124556788999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 307 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
...|.++.+.. +-|...|..-..+|.+.|.+..|+.-.+...+.. ++....|..=..++....++++|.+.|.+-.+
T Consensus 378 v~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 378 VKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999885 3378999999999999999999999888887765 44555555545555556688899999888877
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 013010 387 GGSVPREYTYKLVCDALNA 405 (451)
Q Consensus 387 ~g~~p~~~t~~~li~~~~~ 405 (451)
.. |+..-+..-+.-|..
T Consensus 455 ~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 455 LD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred cC--chhHHHHHHHHHHHH
Confidence 54 665555444444444
No 158
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.23 E-value=0.02 Score=48.04 Aligned_cols=105 Identities=14% Similarity=0.016 Sum_probs=58.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 013010 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP--DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246 (451)
Q Consensus 169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~ 246 (451)
...|..+...+...|++++|+..|++.......+ ...+|..+...+...|++++|...++...... +....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHH
Confidence 3445555666666677777777776665432111 12456666666777777777777777666542 233444555
Q ss_pred HHHHHH-------hcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010 247 LISSYC-------KYGMQTGCRKAIRRRIWEANHLFRLMLF 280 (451)
Q Consensus 247 li~~~~-------~~g~~~~~~~~~~~~~~~a~~~~~~m~~ 280 (451)
+...+. ..|+...+.. .+++|..+++....
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~----~~~~a~~~~~~a~~ 148 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEA----WFDQAAEYWKQAIA 148 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHH----HHHHHHHHHHHHHH
Confidence 555555 4553332222 44455555555543
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.17 E-value=0.015 Score=53.20 Aligned_cols=147 Identities=13% Similarity=0.140 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320 (451)
Q Consensus 242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 320 (451)
.+|..+++..-+.+ ..+.|..+|.+..+.+ +..++....+++. |...++.+.|..+|+...+. +.-
T Consensus 2 ~v~i~~m~~~~r~~-----------g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~ 68 (280)
T PF05843_consen 2 LVWIQYMRFMRRTE-----------GIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPS 68 (280)
T ss_dssp HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHhC-----------ChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCC
Confidence 57888888888888 8999999999998543 3344444444443 33356777899999998765 445
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV 399 (451)
Q Consensus 321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 399 (451)
+...|...+..+...|+.+.|..+|++....-.... ....|...+.-=.+.|+.+.+.++.+++.+. .|+...+..+
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f 146 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELF 146 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHH
Confidence 778889999999999999999999999887521111 2248888888888899999999999988863 4454555555
Q ss_pred HHHH
Q 013010 400 CDAL 403 (451)
Q Consensus 400 i~~~ 403 (451)
++-|
T Consensus 147 ~~ry 150 (280)
T PF05843_consen 147 SDRY 150 (280)
T ss_dssp HCCT
T ss_pred HHHh
Confidence 5544
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.16 E-value=0.012 Score=49.40 Aligned_cols=96 Identities=13% Similarity=0.000 Sum_probs=70.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP--NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 364 (451)
...|..+...+...|++++|...|+......-.| ...++..+-..|...|+.++|+..++...... +....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 4556677777778899999999999887653222 23578888888999999999999999988754 3445556666
Q ss_pred HHHHH-------HcCCHHHHHHHHHHH
Q 013010 365 IHALC-------EAGRVLEARDFLAEL 384 (451)
Q Consensus 365 i~~~~-------~~g~~~~A~~l~~~m 384 (451)
...+. ..|++++|...+++-
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 66666 777877666666544
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.14 E-value=0.014 Score=55.34 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=59.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 013010 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374 (451)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 374 (451)
..+...|++++|.+.|++..+.. +-+...|..+..+|...|++++|+..+++..... +.+...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCH
Confidence 34456677777777777776652 1245666666667777777777777777777654 34556666666777777777
Q ss_pred HHHHHHHHHHHhC
Q 013010 375 LEARDFLAELVDG 387 (451)
Q Consensus 375 ~~A~~l~~~m~~~ 387 (451)
++|...|++.++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776653
No 162
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.13 E-value=0.2 Score=45.70 Aligned_cols=285 Identities=13% Similarity=0.004 Sum_probs=183.9
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHH---HHHHHhcCCH
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCL---IKVLGEEGLV 185 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~l---i~~~~~~g~~ 185 (451)
.+.+..|+.-|+...+. -+.+-.++-.-...|...|+-..|..=+..+.+.. | +- +.+- -..+.+.|.+
T Consensus 51 ~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--p--DF--~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--P--DF--MAARIQRGVVLLKQGEL 122 (504)
T ss_pred hhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--c--cH--HHHHHHhchhhhhcccH
Confidence 45577888888887642 22222233333456777888888888888877763 2 21 2222 2346789999
Q ss_pred HHHHHHHHHHhhCCCC------------CCHHHH--HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010 186 NEALATFYRMKQFRCR------------PDVYAY--NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (451)
Q Consensus 186 ~~A~~~~~~m~~~g~~------------p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~ 251 (451)
+.|..=|+...+..-. +....| ...+..+...|+...|+.....+.+-. +-|...|..-..+|
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~---~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ---PWDASLRQARAKCY 199 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC---cchhHHHHHHHHHH
Confidence 9999999999885311 111122 233455666889999999999988764 46888888889999
Q ss_pred HhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH---HH
Q 013010 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV-TY---NS 327 (451)
Q Consensus 252 ~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~---~~ 327 (451)
...| ....|..=++...+.. .-++.++--+-..+.+.|+.+.++...++..+. .||.. +| ..
T Consensus 200 i~~~-----------e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 200 IAEG-----------EPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKK 265 (504)
T ss_pred HhcC-----------cHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHH
Confidence 9999 5555554444443322 224555555667788899999999999998876 45532 22 11
Q ss_pred -------H--HHHHHhcCCHHHHHHHHHHHHhcCCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 013010 328 -------F--IRYYSVVNEIDKAIEMMRKMQNLNHGVP--TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYT 395 (451)
Q Consensus 328 -------l--i~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t 395 (451)
| +......++|.++++-.+...+.....+ ....+..+-.++...|++.+|++...+.++ +.|+ ..+
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~ 343 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHH
Confidence 1 1223456778888888887776543111 123455666677778999999999988876 4565 566
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 396 YKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 396 ~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
+---..+|.-..+++.|..-+++..
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6666666666666666555554443
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.11 E-value=0.016 Score=54.98 Aligned_cols=91 Identities=12% Similarity=-0.021 Sum_probs=61.5
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 013010 140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (451)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 219 (451)
..+...|++++|.+.|++..+.... +...|..+..+|...|++++|+..+++..+.. +.+...|..+..+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3445567777777777777766422 45566677777777777777777777776643 2245666667777777777
Q ss_pred hHHHHHHHHHhhhCC
Q 013010 220 FNKARFLLEQMELPG 234 (451)
Q Consensus 220 ~~~a~~~~~~m~~~g 234 (451)
+++|...|++.....
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777776654
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.11 E-value=0.0013 Score=47.97 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 013010 301 YRIERALELFDDMNKKGC-IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379 (451)
Q Consensus 301 g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 379 (451)
|+++.|..+++.+.+..- .|+...+-.+..+|.+.|++++|..+++. .+.+ ..+....-.+..+|.+.|++++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 455555555555554421 11222333345555555555555555555 2111 1111222233444555555555555
Q ss_pred HHH
Q 013010 380 FLA 382 (451)
Q Consensus 380 l~~ 382 (451)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 165
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.17 Score=44.21 Aligned_cols=185 Identities=13% Similarity=0.039 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhhc--CC-CCCCHH-hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010 112 LNKATEFYHWVERF--FD-FFHNEM-TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187 (451)
Q Consensus 112 ~~~A~~~f~~~~~~--~~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 187 (451)
.++.++++..+... .| ..++.. .|..++-+....|+.+.|...++.+..+-.+. +-..-... -.+-..|++++
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S-~RV~~lka--m~lEa~~~~~~ 104 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS-KRVGKLKA--MLLEATGNYKE 104 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC-hhHHHHHH--HHHHHhhchhh
Confidence 56666666665542 12 334443 35556666667777777777777777664221 11111111 11334577777
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 013010 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267 (451)
Q Consensus 188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~ 267 (451)
|+++|+.+.+.+ +-|.++|--=+...-..|+--+|++-+.+..+.- ..|...|.-+...|...| +
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F---~~D~EAW~eLaeiY~~~~-----------~ 169 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF---MNDQEAWHELAEIYLSEG-----------D 169 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHhHh-----------H
Confidence 788777777755 4456666655555555666666766666666553 257777777777777777 7
Q ss_pred HHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 013010 268 IWEANHLFRLMLFKGFVPD-VVAYNCLIDGCCKTY---RIERALELFDDMNKK 316 (451)
Q Consensus 268 ~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 316 (451)
+++|.-.++++.-. .|. ..-+..+...+...| +.+-+.+.|....+.
T Consensus 170 f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 170 FEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 77777777777643 333 333334444443333 345566666666554
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.09 E-value=0.11 Score=47.73 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCI-----PNRV-TYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
..+..+...+.+.|++++|.++|++....-.. ++.. .|-..+-.+...|+...|.+.+++.....
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44556667778888888888888877654221 1221 22233335555677778888887776543
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.04 E-value=0.05 Score=45.76 Aligned_cols=85 Identities=21% Similarity=0.149 Sum_probs=66.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN--RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 364 (451)
...+..+...+...|++++|...|++..+.+-.+. ...+..+...|.+.|++++|...+.+..+.. +-+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence 44577777788899999999999999886543332 4678888889999999999999999988864 3456667777
Q ss_pred HHHHHHcCC
Q 013010 365 IHALCEAGR 373 (451)
Q Consensus 365 i~~~~~~g~ 373 (451)
...+...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 777777766
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.03 E-value=0.0018 Score=47.25 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=19.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 013010 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194 (451)
Q Consensus 146 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 194 (451)
|+++.|..+++++.+.... .++...+-.+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444444311 00222222344444445555555555444
No 169
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.02 E-value=0.29 Score=45.54 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=87.5
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 366 (451)
..+.+..|.-+...|+...|.++-.+.. .|+..-|-.-+.+|+..++|++-..+... . -++.-|..++.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k---KsPIGyepFv~ 245 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K---KSPIGYEPFVE 245 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C---CCCCChHHHHH
Confidence 4466677788888999988888877663 47999999999999999999988876432 1 23589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 367 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
+|.+.|...+|..++.. +. +..-+..|.++|++..|.+.-.+..
T Consensus 246 ~~~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 99999999999998877 22 2445778888888887766655444
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.98 E-value=0.12 Score=51.56 Aligned_cols=146 Identities=13% Similarity=0.037 Sum_probs=98.2
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHH
Q 013010 199 RCRPDVYAYNVVINALCRVG-----NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH 273 (451)
Q Consensus 199 g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~ 273 (451)
+.+.|...|...+.+..... +.+.|..+|++..+.. |-....|..+..+|.......... ..++..+.+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld---P~~a~a~A~la~~~~~~~~~~~~~---~~~l~~a~~ 405 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE---PDFTYAQAEKALADIVRHSQQPLD---EKQLAALST 405 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHhcCCcc---HHHHHHHHH
Confidence 34568899999988865432 3678999999999876 224455555555443332221100 013445555
Q ss_pred HHHHHHhc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 274 LFRLMLFK-GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 274 ~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
........ ....+...|.++.-.....|++++|...+++..+.+ |+...|..+-..|...|+.++|.+.+++.....
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55443332 233455677777666667799999999999988874 688888888889999999999999998887765
No 171
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.94 E-value=0.031 Score=44.04 Aligned_cols=104 Identities=11% Similarity=0.034 Sum_probs=67.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365 (451)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 365 (451)
|..++.++|.++++.|+++....+++..- |+.++... ..+. ........|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHH
Confidence 34566666667777777666666665432 22221100 0000 112222368899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCCc
Q 013010 366 HALCEAGRVLEARDFLAELVD-GGSVPREYTYKLVCDALNAAEEPS 410 (451)
Q Consensus 366 ~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~ 410 (451)
.+|+..|++..|+++++...+ -+++.+..+|..|++-+...-+..
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~~ 105 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSKR 105 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCc
Confidence 999999999999999988874 478888889998888776666543
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.83 E-value=0.053 Score=42.28 Aligned_cols=58 Identities=14% Similarity=0.044 Sum_probs=29.6
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010 140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197 (451)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 197 (451)
.++-..|+.++|..+|++....|.....-...+-.+-..+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555555443322233444444555555555555555555544
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.81 E-value=0.006 Score=42.21 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=23.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 013010 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (451)
Q Consensus 182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 233 (451)
.|++++|+++|+.+.+.. +-+...+..+..+|.+.|++++|..+++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555554432 113444444555555555555555555555444
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.79 E-value=0.34 Score=43.23 Aligned_cols=175 Identities=13% Similarity=0.087 Sum_probs=106.5
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHH---HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 013010 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY---TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286 (451)
Q Consensus 210 li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~---~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 286 (451)
....+...|++++|.+.|+++...-- -+..+. -.+..+|.+.+ ++++|...+++..+.--.-.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~-----------~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNA-----------DLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCcCCC
Confidence 34456678999999999999987642 222332 35667788888 89999999999887522212
Q ss_pred HhhHHHHHHHHHh--cC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010 287 VVAYNCLIDGCCK--TY---------------R---IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346 (451)
Q Consensus 287 ~~~~~~li~~~~~--~g---------------~---~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (451)
..-|...+.+.+. .+ + ..+|.+.|++ +|.-|=...-..+|...+.
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~---------------li~~yP~S~ya~~A~~rl~ 168 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK---------------LVRGYPNSQYTTDATKRLV 168 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH---------------HHHHCcCChhHHHHHHHHH
Confidence 2344444444442 11 1 1233334444 4444444444555555444
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 013010 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG--GSVPREYTYKLVCDALNAAEEPSLLDDGLRK 418 (451)
Q Consensus 347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 418 (451)
.+...- ...--.+.+-|.+.|.+..|..-++.+++. +.+........++.+|...|..+.+.+....
T Consensus 169 ~l~~~l-----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 169 FLKDRL-----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHH-----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 443321 111124455678888888888888888864 4445566777888888888888887766553
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.73 E-value=0.091 Score=40.97 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=71.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----hhhHHHHHHH
Q 013010 294 IDGCCKTYRIERALELFDDMNKKGCIPN--RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT----SSSYTPIIHA 367 (451)
Q Consensus 294 i~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~ 367 (451)
-.++-..|+.++|..+|++....|.... ...+-.+-.+|...|++++|..++++..... |+ ......+..+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHH
Confidence 3456678899999999999888876654 3456667778888899999999998887653 33 1222223346
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013010 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404 (451)
Q Consensus 368 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 404 (451)
+...|+.++|.+.+-.... ++...|..-|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 7788999999888766543 23336666665554
No 176
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.73 E-value=0.19 Score=43.61 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=31.1
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010 140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197 (451)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 197 (451)
..+...|++++|.+.|+.+.......+......-.++.++.+.|+++.|...+++..+
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344466666666666666665433333444445555666666666666666666554
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.71 E-value=0.0075 Score=41.71 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=46.0
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
.+.|++++|.++|+.+...... +...+..+..+|.+.|++++|.++++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 3568888888888888877532 5666777888888888888888888888774 46655555443
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.69 E-value=0.041 Score=44.71 Aligned_cols=99 Identities=11% Similarity=-0.063 Sum_probs=81.4
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
....-.+...+...|++++|.++|+-+...... +..-|-.|--++-..|++++|+..|........ -|...+-.+-
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag 110 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 344555777788899999999999999887633 555677888888889999999999999988663 4678888888
Q ss_pred HHHHhcCChHHHHHHHHHhhhCC
Q 013010 212 NALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 212 ~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
.++...|+.+.|.+-|+......
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999999877654
No 179
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.68 E-value=0.094 Score=51.60 Aligned_cols=259 Identities=14% Similarity=0.099 Sum_probs=126.2
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHH---------HHHHHHcCCCCCccHHhHHHHHHHHHhcCCH--HHHHHHHHHHhhC
Q 013010 130 HNEMTCKEMGIVFARGNNVKGLWDF---------LKDMSRRGNGELVTTSSVTCLIKVLGEEGLV--NEALATFYRMKQF 198 (451)
Q Consensus 130 ~~~~~~~~ll~~~~~~g~~~~a~~~---------~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~ 198 (451)
+....+.+-+.-|...|.+++|.++ ++.+.... .++-.++.--++|.+..+. -+-..-+++++++
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A----LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA----LEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHH----HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3344455555556667777777554 12221111 1222345555666655443 2344445677777
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH-----HHHHHHhcCCchhhhHHHHHHHHHHHH
Q 013010 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI-----LISSYCKYGMQTGCRKAIRRRIWEANH 273 (451)
Q Consensus 199 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~-----li~~~~~~g~~~~~~~~~~~~~~~a~~ 273 (451)
|-.|+..... ..|+-.|++.+|.++|.+--... .-...|+- ...-|...|....-...++++-+-|..
T Consensus 630 ge~P~~iLlA---~~~Ay~gKF~EAAklFk~~G~en----RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~ 702 (1081)
T KOG1538|consen 630 GETPNDLLLA---DVFAYQGKFHEAAKLFKRSGHEN----RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARN 702 (1081)
T ss_pred CCCchHHHHH---HHHHhhhhHHHHHHHHHHcCchh----hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence 7777765433 34566778888888876532211 11122221 233444445333322222222222211
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH------HHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013010 274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD------MNKKGC---IPNRVTYNSFIRYYSVVNEIDKAIEM 344 (451)
Q Consensus 274 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~g~---~p~~~t~~~li~~~~~~g~~~~A~~~ 344 (451)
++-... -...+..+|+.++|..+..+ +.+-+. ..+..+...+...+.+...+..|-++
T Consensus 703 ---------~kePka----AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeI 769 (1081)
T KOG1538|consen 703 ---------IKEPKA----AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEI 769 (1081)
T ss_pred ---------cCCcHH----HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHH
Confidence 111111 11222234444444433211 111111 12345555555555666677777777
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHhcCCCchHH
Q 013010 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY-----------TYKLVCDALNAAEEPSLLD 413 (451)
Q Consensus 345 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----------t~~~li~~~~~~g~~~~a~ 413 (451)
|..|-.. ..+++.....+++++|..+-+...+ +.|+.+ -|.---+||.++|+..+|.
T Consensus 770 F~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~ 837 (1081)
T KOG1538|consen 770 FLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAV 837 (1081)
T ss_pred HHHhccH----------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHH
Confidence 7776432 2355566677777777777665443 223321 2333456777777777777
Q ss_pred HHHHHHHHhch
Q 013010 414 DGLRKRIRDGI 424 (451)
Q Consensus 414 ~~~~~~~~~g~ 424 (451)
+++++.....+
T Consensus 838 ~vLeQLtnnav 848 (1081)
T KOG1538|consen 838 QVLEQLTNNAV 848 (1081)
T ss_pred HHHHHhhhhhh
Confidence 77777764433
No 180
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.68 E-value=0.14 Score=41.67 Aligned_cols=96 Identities=7% Similarity=-0.051 Sum_probs=77.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 013010 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (451)
Q Consensus 170 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~ 249 (451)
...-.+-..+...|++++|..+|+-+...+. -+..-|-.|--+|-..|++++|...|........ -|...+-.+-.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~---ddp~~~~~ag~ 111 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI---DAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCchHHHHHHH
Confidence 3445566667789999999999999988542 2556666777777788999999999999988874 47888999999
Q ss_pred HHHhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280 (451)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~ 280 (451)
++...| +.+.|.+.|+....
T Consensus 112 c~L~lG-----------~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 112 CYLACD-----------NVCYAIKALKAVVR 131 (157)
T ss_pred HHHHcC-----------CHHHHHHHHHHHHH
Confidence 999999 88888888886664
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.62 E-value=0.055 Score=48.77 Aligned_cols=103 Identities=10% Similarity=-0.028 Sum_probs=80.4
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNV 209 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ 209 (451)
...|...+..+.+.|++++|...|+.+.+...........+-.+...|...|++++|...|+.+.+.- -+.....+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34577666666778999999999999999865443335678888999999999999999999998632 1123455555
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC
Q 013010 210 VINALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 210 li~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
+...+...|+.++|.++|+++.+..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6667888999999999999998765
No 182
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.61 E-value=0.026 Score=45.98 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-----hCCCCCCHHHHH
Q 013010 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV-----DGGSVPREYTYK 397 (451)
Q Consensus 324 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t~~ 397 (451)
+...++..+...|++++|..+...+.... +.+...|..+|.+|...|+..+|.+.|+.+. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45567777788899999999999998877 6788899999999999999999999988775 358988877543
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.60 E-value=0.13 Score=51.32 Aligned_cols=145 Identities=9% Similarity=-0.039 Sum_probs=101.8
Q ss_pred CCCCCHHhHHHHHHHHHcc-----CChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc--------CCHHHHHHHHH
Q 013010 127 DFFHNEMTCKEMGIVFARG-----NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE--------GLVNEALATFY 193 (451)
Q Consensus 127 ~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~ 193 (451)
..+.+...|...+.+.... ++.+.|..+|++..+.... ....|..+..++... .++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD---FTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4456778888888875432 2477999999999998533 344555544444322 12334444444
Q ss_pred HHhhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHH
Q 013010 194 RMKQF-RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272 (451)
Q Consensus 194 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~ 272 (451)
..... ....+...|.++.-.+...|++++|...+++..... |+...|..+...+...| +.++|.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~----ps~~a~~~lG~~~~~~G-----------~~~eA~ 473 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE----MSWLNYVLLGKVYELKG-----------DNRLAA 473 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHcC-----------CHHHHH
Confidence 43332 233456778877666677899999999999999876 78999999999999999 999999
Q ss_pred HHHHHHHhcCCCCCHhhHH
Q 013010 273 HLFRLMLFKGFVPDVVAYN 291 (451)
Q Consensus 273 ~~~~~m~~~~~~~~~~~~~ 291 (451)
+.+.+.... .|...||.
T Consensus 474 ~~~~~A~~L--~P~~pt~~ 490 (517)
T PRK10153 474 DAYSTAFNL--RPGENTLY 490 (517)
T ss_pred HHHHHHHhc--CCCCchHH
Confidence 999888754 45555553
No 184
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.59 E-value=0.63 Score=43.38 Aligned_cols=297 Identities=13% Similarity=0.097 Sum_probs=184.2
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH--HccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHH
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVF--ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN 186 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~ 186 (451)
.|+-..|..+-....+ -+.-|..-.-.|+.+= .-.|+++.|.+-|+.|.... .-...-...|.-..-+.|..+
T Consensus 97 AGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP---EtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP---ETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh---HHHHHhHHHHHHHHHhcccHH
Confidence 4555666666544432 1334555555555442 34699999999999997742 111222344444556678888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHH--HHHHHHHHhcCCchhhhHHH
Q 013010 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY--TILISSYCKYGMQTGCRKAI 264 (451)
Q Consensus 187 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~--~~li~~~~~~g~~~~~~~~~ 264 (451)
.|...-++.-..- +--...+...+...|..|+++.|+++++.-+...+ +.++..-- ..|+.+-...- +
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-ie~~~aeR~rAvLLtAkA~s~--------l 241 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-IEKDVAERSRAVLLTAKAMSL--------L 241 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHH--------h
Confidence 8888887776532 22367888999999999999999999988766554 34554322 22333221111 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 013010 265 RRRIWEANHLFRLMLFKGFVPDVVA-YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343 (451)
Q Consensus 265 ~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 343 (451)
.-+...|...-.+.. ++.||..- --.-..++.+.|+..++-.+++.+-+.. |.+..+...+ +.+.|+ .+..
T Consensus 242 dadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gd--ta~d 313 (531)
T COG3898 242 DADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGD--TALD 313 (531)
T ss_pred cCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCC--cHHH
Confidence 113344544444333 34566433 2233467889999999999999998874 5554443332 335554 3333
Q ss_pred HHHHHHhcCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHH
Q 013010 344 MMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA-EEPSLLDDGLRKRIR 421 (451)
Q Consensus 344 ~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~~~~ 421 (451)
=++...+....+| +..+--.+..+-...|++..|..--+.... ..|....|..|.+.-... |+-+++...+-+.++
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3433333222233 455666777888889998887765554443 568888898888877666 999999888888887
Q ss_pred hchHHHHHH
Q 013010 422 DGIEYRFRQ 430 (451)
Q Consensus 422 ~g~~~~~~~ 430 (451)
.-=.|.|..
T Consensus 392 APrdPaW~a 400 (531)
T COG3898 392 APRDPAWTA 400 (531)
T ss_pred CCCCCcccc
Confidence 555555543
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.58 E-value=0.59 Score=42.89 Aligned_cols=135 Identities=11% Similarity=0.102 Sum_probs=80.9
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CChh-hH
Q 013010 294 IDGCCKT-YRIERALELFDDMNK----KGCIP--NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV----PTSS-SY 361 (451)
Q Consensus 294 i~~~~~~-g~~~~a~~~~~~m~~----~g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----p~~~-~~ 361 (451)
...|-.. |++++|.+.|++..+ .| .+ -..++..+...+.+.|++++|.++|++........ .+.. .|
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 3445555 788888888887643 33 22 14556778888999999999999999987754321 1222 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHHHHH
Q 013010 362 TPIIHALCEAGRVLEARDFLAELVDG--GSVPR--EYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQ 430 (451)
Q Consensus 362 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 430 (451)
-..+-.+...||...|.+.+++.... ++..+ ......|++++ +.|+.+...+.+.+.-+-.--..|..
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~~ld~w~~ 271 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSISRLDNWKT 271 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS---HHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccCccHHHHH
Confidence 33334566679999999999998754 34333 34455666655 56677767777766543333333444
No 186
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.56 E-value=0.28 Score=42.53 Aligned_cols=62 Identities=15% Similarity=0.045 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 013010 172 VTCLIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 233 (451)
+-.....+...|++.+|.+.|+.+...- -+--....-.+..++.+.|+++.|...+++..+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344455566677777777777776531 1112334445566677777777777777776654
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.42 E-value=0.016 Score=39.68 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=26.0
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010 140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197 (451)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 197 (451)
..+.+.|++++|.+.|+.+.+... .+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P---~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP---DNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST---THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555555555555554431 1344444455555555555555555555443
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.40 E-value=0.016 Score=39.63 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=50.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 175 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
+...+...|++++|.+.|++..+.. +-+...+..+..++...|++++|..+|++..+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4567888999999999999999875 3367888889999999999999999999997654
No 189
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.38 E-value=0.062 Score=42.34 Aligned_cols=57 Identities=5% Similarity=0.008 Sum_probs=42.5
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc
Q 013010 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371 (451)
Q Consensus 315 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 371 (451)
.....|+..+..+++.+|+..|++..|+++.+...+......+..+|..|+.-....
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 445678888888888888888888888888888777665455577788777654443
No 190
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.38 E-value=0.22 Score=40.50 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH-----
Q 013010 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML----- 279 (451)
Q Consensus 205 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~----- 279 (451)
.+...++..+...|++++|..+...+.... |-+...|..+|.+|...| +..+|.++|+.+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g-----------~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQG-----------RRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCc-----------CHHHHHHHHHHHHHHHHH
Confidence 455666777788899999999998888765 467888899999999999 7778888887664
Q ss_pred hcCCCCCHhhH
Q 013010 280 FKGFVPDVVAY 290 (451)
Q Consensus 280 ~~~~~~~~~~~ 290 (451)
+.|+.|+..+-
T Consensus 129 elg~~Ps~~~~ 139 (146)
T PF03704_consen 129 ELGIEPSPETR 139 (146)
T ss_dssp HHS----HHHH
T ss_pred HhCcCcCHHHH
Confidence 34788876553
No 191
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.36 E-value=0.82 Score=42.04 Aligned_cols=151 Identities=17% Similarity=0.238 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC
Q 013010 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK--TY----RIERALELFDDMNKKGC---IPNRVTYNSFIRYYSVVNE 337 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~ 337 (451)
.+++...+++.|.+.|++-+..+|-+....... .. ...+|..+|+.|++... .++..++..|+.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 677899999999999999998877663333332 22 36679999999998742 3466777777655 3333
Q ss_pred ----HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCc
Q 013010 338 ----IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR---VLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410 (451)
Q Consensus 338 ----~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 410 (451)
.+.+..+|+.+.+.|..+-|..-+.+-+-+++.... ...+.++++.+.+.|+++....|..+ ..++-.++.+
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l-GlLall~~~~ 233 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL-GLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH-HHHHhcCCch
Confidence 467888899999888755555444444444444322 45788999999999999988887665 3333333333
Q ss_pred -hHHHHHHHHH
Q 013010 411 -LLDDGLRKRI 420 (451)
Q Consensus 411 -~a~~~~~~~~ 420 (451)
...+.+.++.
T Consensus 234 ~~~~~~i~ev~ 244 (297)
T PF13170_consen 234 EKIVEEIKEVI 244 (297)
T ss_pred HHHHHHHHHHH
Confidence 4444444443
No 192
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.21 E-value=0.18 Score=52.35 Aligned_cols=181 Identities=14% Similarity=0.052 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHH
Q 013010 112 LNKATEFYHWVERFFDFFHN-EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 190 (451)
...|+..|-...+ ..++ ...|..|...|+...+...|.+.|+...+.+.. +...+....+.|++..+++.|..
T Consensus 474 ~~~al~ali~alr---ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat---daeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 474 SALALHALIRALR---LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT---DAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred HHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---hhhhHHHHHHHhhccccHHHHHH
Confidence 3444444444332 2223 346888888888888888888888887776522 66678888999999999999998
Q ss_pred HHHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q 013010 191 TFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269 (451)
Q Consensus 191 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~ 269 (451)
+.-..-+.. ...-...|--.--.|...++..+|...|+...+.. |-|...|..+..+|.++| ++.
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d---PkD~n~W~gLGeAY~~sG-----------ry~ 613 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD---PKDYNLWLGLGEAYPESG-----------RYS 613 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC---chhHHHHHHHHHHHHhcC-----------cee
Confidence 843332211 00011222223334667788888888888777665 358889999999999999 888
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 013010 270 EANHLFRLMLFKGFVPDVVAYNCL--IDGCCKTYRIERALELFDDMNK 315 (451)
Q Consensus 270 ~a~~~~~~m~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~ 315 (451)
.|.++|.+.... .|+ .+|... .-.-|..|.+.+|...+.....
T Consensus 614 ~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 614 HALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 899999877654 343 233222 2234667888888887776543
No 193
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=1.7 Score=44.04 Aligned_cols=263 Identities=11% Similarity=0.058 Sum_probs=153.3
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCC--CCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGN--GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
.+|..+..-.-.+|+.+-|..+++.=...+. +...+..-+..-+.-+.+.|+.+....++-.|.+. .+...+...
T Consensus 508 iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~ 584 (829)
T KOG2280|consen 508 ISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT 584 (829)
T ss_pred eeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH
Confidence 4566666666678999999988865433321 11223334566777778888888888877777652 222222221
Q ss_pred H----------HHHHhc------------CChHHHHHHH--HHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHH
Q 013010 211 I----------NALCRV------------GNFNKARFLL--EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR 266 (451)
Q Consensus 211 i----------~~~~~~------------g~~~~a~~~~--~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~ 266 (451)
+ .-+++. ++-..+..-| +....... +.+-..........+.+.....-..+.+.
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~-~~~r~~~lk~~a~~~a~sk~~s~e~ka~e- 662 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAET-IEGRIPALKTAANAFAKSKEKSFEAKALE- 662 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhh-hcccchhHHHHHHHHhhhhhhhhHHHHHH-
Confidence 1 111121 1111111111 11000000 00111122333344444432111111111
Q ss_pred HHHHHHHHHHHHHh-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 013010 267 RIWEANHLFRLMLF-KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345 (451)
Q Consensus 267 ~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 345 (451)
+...-+++.+.+.. .|.....-+.+--+.-+...|+..+|.++-.+.+ .||...|-.=+.+++..+++++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 22333344444442 3445555677777888889999999998888765 578999999999999999998877665
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 346 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
..++ + +.-|...+.+|.+.|+.++|.+++-+.- +.. -...+|.+.|++.+|.+.--+..
T Consensus 739 kskk------s-PIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 739 KSKK------S-PIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred hccC------C-CCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHHhc
Confidence 5442 2 5788999999999999999999986532 111 45788999999887766655444
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.16 E-value=0.034 Score=38.46 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 013010 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG-RVLEARDFLAELV 385 (451)
Q Consensus 322 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~ 385 (451)
..+|..+-..+...|++++|+..|.+..+.. +-+...|..+-.+|...| ++++|.+.+++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444455555555555555555555555544 334445555555555555 4555555555443
No 195
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.12 E-value=0.7 Score=48.20 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHH
Q 013010 185 VNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~ 263 (451)
...|+..|-+.... .++ ...|..|...|+...+...|.+.|+...+.. +.+........+.|++..
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---atdaeaaaa~adtyae~~-------- 540 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---ATDAEAAAASADTYAEES-------- 540 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhccc--------
Confidence 44444444444432 222 4567777777887778888888888887765 247778888888998888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHhhHHH--HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNC--LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341 (451)
Q Consensus 264 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 341 (451)
.++.|..+.-..-+.. +.-...+|- .--.|.+.++...|..-|+...... +-|...|..+..+|...|++..|
T Consensus 541 ---~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 541 ---TWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred ---cHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehH
Confidence 7788877743322211 111122222 2234567788888888888777653 22788899999999999999999
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHH--HHHHcCCHHHHHHHHHHHH
Q 013010 342 IEMMRKMQNLNHGVPTSSSYTPIIH--ALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 342 ~~~~~~m~~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~l~~~m~ 385 (451)
.++|.+..... |+ .+|..... .-|..|.+.+|...+...+
T Consensus 616 lKvF~kAs~Lr---P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 616 LKVFTKASLLR---PL-SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHhhhhhHhcC---cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99998887653 33 34443333 3567789999988887765
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.11 E-value=0.034 Score=38.51 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG-LVNEALATFYRMKQ 197 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 197 (451)
..|..+...+...|++++|...|.+..+.+. .+...|..+-.+|...| ++++|++.|+...+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p---~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP---NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST---THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555555555666666666655555531 14445555555555555 45555555555443
No 197
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.09 E-value=1.2 Score=41.43 Aligned_cols=110 Identities=14% Similarity=0.107 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 013010 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322 (451)
Q Consensus 243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 322 (451)
+.+..|.-+...| ....|.++-.+.. .||..-|-..+.+++..++|++-.++-.. .- ++
T Consensus 179 Sl~~Ti~~li~~~-----------~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sP 237 (319)
T PF04840_consen 179 SLNDTIRKLIEMG-----------QEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SP 237 (319)
T ss_pred CHHHHHHHHHHCC-----------CHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CC
Confidence 3444455666666 5666666655542 46777788888888888888877665432 11 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384 (451)
Q Consensus 323 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 384 (451)
.-|..++.+|.+.|+..+|..+...+. +..-+..|.+.|++.+|.+.-.+.
T Consensus 238 IGyepFv~~~~~~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 238 IGYEPFVEACLKYGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CChHHHHHHHHHCCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 667788888888888888888777721 144567778888888887765443
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.00 E-value=0.16 Score=45.77 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=71.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCChhhH
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN----RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSY 361 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~ 361 (451)
...|+..+..+.+.|++++|...|+.+.+. -|+ ...+-.+-..|...|++++|...|..+.+.... ......+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345666665556678999999999988876 343 246667778888899999999999998875421 1123344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010 362 TPIIHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 362 ~~li~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
-.+...+...|+.++|.++|+.+++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556677889999999999888764
No 199
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.95 E-value=0.14 Score=45.89 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 013010 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEM 344 (451)
Q Consensus 266 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~ 344 (451)
+++++|+..|.+..+.. +-|.+-|..=..+|++.|.++.|++-.+..... .| ...+|..|=.+|...|++.+|++.
T Consensus 95 ~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred hhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 46777777777766542 234555666666777777777776666655543 23 246677777777777777777777
Q ss_pred HHHHHhcCCCCCChhhHH
Q 013010 345 MRKMQNLNHGVPTSSSYT 362 (451)
Q Consensus 345 ~~~m~~~~~~~p~~~~~~ 362 (451)
|++..+.. |+-.+|-
T Consensus 172 ykKaLeld---P~Ne~~K 186 (304)
T KOG0553|consen 172 YKKALELD---PDNESYK 186 (304)
T ss_pred HHhhhccC---CCcHHHH
Confidence 77666543 4444443
No 200
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.61 Score=40.62 Aligned_cols=208 Identities=14% Similarity=0.090 Sum_probs=113.1
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
...|..-..+|....++++|...+.+..+-. .. +...| -....++.|.-+.++|.+. .--+..|+-..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~y-En--nrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs 98 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-EN--NRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKAS 98 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-Hh--cccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHH
Confidence 3456666677777778887777666654321 11 21111 1123455666666666552 22344566666
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh---cC--CCCC
Q 013010 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF---KG--FVPD 286 (451)
Q Consensus 212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~---~~--~~~~ 286 (451)
..|...|..+.|-..+++.-+.--.+ +.++|+++|++-.. .+ .+.-
T Consensus 99 ~lY~E~GspdtAAmaleKAak~lenv-----------------------------~Pd~AlqlYqralavve~~dr~~ma 149 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKALENV-----------------------------KPDDALQLYQRALAVVEEDDRDQMA 149 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhcC-----------------------------CHHHHHHHHHHHHHHHhccchHHHH
Confidence 67777777766655555432211001 33344444433221 10 1112
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCChh
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIPN-RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG--VPTSS 359 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~p~~~ 359 (451)
...|..+-..+.+...+++|-..+..-... .--|+ ...|-..|-.|....++..|...++.-.+.+.. .-+..
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r 229 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSR 229 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHH
Confidence 233455556677777777766555432211 11122 244666777777888999999999885443321 34567
Q ss_pred hHHHHHHHHHHcCCHHHHHHHH
Q 013010 360 SYTPIIHALCEAGRVLEARDFL 381 (451)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~l~ 381 (451)
+...|+.+| ..|+.+++.+++
T Consensus 230 ~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 230 SLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHh-ccCCHHHHHHHH
Confidence 888888877 567777766554
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.87 E-value=0.24 Score=46.27 Aligned_cols=290 Identities=14% Similarity=0.033 Sum_probs=174.5
Q ss_pred CHHhHHHHHH--HHHccCChhHHHHHHHHHHHcCCCCCc-cHHhHHHHHHHHHhcCCHHHHHHHHHH--Hhh--CCC-CC
Q 013010 131 NEMTCKEMGI--VFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYR--MKQ--FRC-RP 202 (451)
Q Consensus 131 ~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~--~g~-~p 202 (451)
+..++...+. -+|+.|+......+|+...+.|-.... =..+|..|-++|.-.+++++|+++..- ... .|- .-
T Consensus 14 ~~SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG 93 (639)
T KOG1130|consen 14 DRSCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG 93 (639)
T ss_pred hhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc
Confidence 3344444443 478999999999999999888743211 123567777888888888888876321 111 010 01
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHH----HHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh---------HHHHHHHH
Q 013010 203 DVYAYNVVINALCRVGNFNKARFL----LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR---------KAIRRRIW 269 (451)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~---------~~~~~~~~ 269 (451)
..-+...|-+.+--.|.+++|.-. ++-.++.|-.+ ....+|..+-..|...|.-.++. ..++..++
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 122233334444445566665432 22223333211 23456667788887777433222 12334666
Q ss_pred HHHHHHHHHHh----cCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 013010 270 EANHLFRLMLF----KGFV-PDVVAYNCLIDGCCKTYRIERALELFDDM----NKKGCIP-NRVTYNSFIRYYSVVNEID 339 (451)
Q Consensus 270 ~a~~~~~~m~~----~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p-~~~t~~~li~~~~~~g~~~ 339 (451)
.|.++|.+=.+ .|-. .-...|..|-+.|.-.|+++.|+...+.- ++.|-+. -...+..|-++++-.|+++
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence 67777654322 2211 12355777777788889999988765542 2334322 3567788888999999999
Q ss_pred HHHHHHHHHH----hcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH----hC-CCCCCHHHHHHHHHHHHhcCCCc
Q 013010 340 KAIEMMRKMQ----NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV----DG-GSVPREYTYKLVCDALNAAEEPS 410 (451)
Q Consensus 340 ~A~~~~~~m~----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~-g~~p~~~t~~~li~~~~~~g~~~ 410 (451)
.|.+.|+.-. +.|.......++-.|-.+|.-..++++|+.++.+=. +. ...-....|-+|-.++...|..+
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~ 332 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHR 332 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHH
Confidence 9999887643 333323445566677788888888899988876433 11 22235678888999999999988
Q ss_pred hHHHHHHHHHH
Q 013010 411 LLDDGLRKRIR 421 (451)
Q Consensus 411 ~a~~~~~~~~~ 421 (451)
.|......-++
T Consensus 333 kAl~fae~hl~ 343 (639)
T KOG1130|consen 333 KALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHH
Confidence 88766655543
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.26 Score=43.28 Aligned_cols=61 Identities=7% Similarity=0.049 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 013010 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 232 (451)
.+.++.++.-.|.+.-...++.+..+..-+.++.....+...-.+.|+.+.|...|++..+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444444444555555555555555544444555555555555556666666666655543
No 203
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.80 E-value=0.071 Score=47.15 Aligned_cols=89 Identities=11% Similarity=0.135 Sum_probs=61.2
Q ss_pred CCCHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------CHHHHH
Q 013010 284 VPDVVAYNCLIDGCCK-----TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN----------------EIDKAI 342 (451)
Q Consensus 284 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----------------~~~~A~ 342 (451)
..|..+|-+.+..+.. .+.++-....++.|.+-|+.-|..+|+.||+.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3466666666666653 3567777777888888888888888888888765432 234466
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHcCC
Q 013010 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373 (451)
Q Consensus 343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 373 (451)
.++++|...|. .||..+-..|+.+|.+.+-
T Consensus 144 ~vLeqME~hGV-mPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGV-MPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCC-CCchHHHHHHHHHhccccc
Confidence 77777777766 6777777777777766654
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.36 Score=42.48 Aligned_cols=140 Identities=11% Similarity=0.053 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 013010 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322 (451)
Q Consensus 243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 322 (451)
+.+.++..+.-.+ .+.-....+.+..+..-+.++.....|.+.-.+.|+.+.|...|++..+..-..|.
T Consensus 179 Vmy~~~~~llG~k-----------Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~ 247 (366)
T KOG2796|consen 179 VMYSMANCLLGMK-----------EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG 247 (366)
T ss_pred HHHHHHHHHhcch-----------hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc
Confidence 4456666666666 67777888888888766677888889999999999999999999988776555566
Q ss_pred HHHHHHHH-----HHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010 323 VTYNSFIR-----YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397 (451)
Q Consensus 323 ~t~~~li~-----~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 397 (451)
.+++.++. .|.-.+++..|...+.+....+ ..|+..-|.=.-.+.-.|+..+|.+.++.|++.. |...+-+
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 66665543 3445678888999998888766 4455555544444455688999999999998753 4444444
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.76 E-value=0.24 Score=47.35 Aligned_cols=70 Identities=6% Similarity=-0.085 Sum_probs=58.1
Q ss_pred CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 013010 129 FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198 (451)
Q Consensus 129 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 198 (451)
+.+...++.+..+|.+.|++++|...|++..+.+........+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4467789999999999999999999999988875331111146999999999999999999999999884
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.73 E-value=0.095 Score=36.65 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=35.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
..|.+.+++++|.++++.+...+ +.+...+...-..+.+.|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566667777777777666654 345555556666666677777777777666653
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.73 E-value=0.038 Score=39.36 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=41.3
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRR----GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 196 (451)
.+|+.+...|...|++++|...|++..+. |...+....+++.+..+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45777777778888888888887766543 11111125566777777777777777777777654
No 208
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.72 E-value=0.14 Score=45.32 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 013010 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (451)
Q Consensus 221 ~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~ 256 (451)
+-+.+++++|...|+- ||..+-..|++++.+.+.
T Consensus 140 ~C~I~vLeqME~hGVm--PdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVM--PDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCC--CchHHHHHHHHHhccccc
Confidence 4578888888888865 888888888888888774
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.70 E-value=1 Score=37.58 Aligned_cols=137 Identities=9% Similarity=0.072 Sum_probs=105.6
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHH
Q 013010 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362 (451)
Q Consensus 283 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 362 (451)
+.|++..--.|..++...|+..+|...|++....-..-|....-.+.++....+++..|...++.+.+...-.-++.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 35666666778899999999999999999988765566888888999999999999999999999887653333444566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 363 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
.+-+.|.-.|+...|..-|+...+. .|+...--.-..-+.+.|+.+++...+....+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6778899999999999999998874 45544333344567888887777666665543
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.93 Score=40.85 Aligned_cols=102 Identities=13% Similarity=0.017 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC
Q 013010 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282 (451)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~ 282 (451)
|...|-.|-..|...|+.+.|..-|....+.. +++...+..+..++....+.. .-.++..+|+++....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---g~n~~~~~g~aeaL~~~a~~~--------~ta~a~~ll~~al~~D 223 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA---GDNPEILLGLAEALYYQAGQQ--------MTAKARALLRQALALD 223 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCc--------ccHHHHHHHHHHHhcC
Confidence 55666666666666666666666666555443 245555555555544443222 3345555555555432
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316 (451)
Q Consensus 283 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 316 (451)
+-|+.+...|-..+...|++.+|...|+.|.+.
T Consensus 224 -~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 224 -PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred -CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 223444444555555556666666666655554
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.47 E-value=0.1 Score=36.49 Aligned_cols=55 Identities=18% Similarity=0.124 Sum_probs=26.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 013010 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (451)
Q Consensus 178 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 233 (451)
.|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|...|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444455555555555554432 123344444444455555555555555555443
No 212
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.47 E-value=0.23 Score=44.52 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=46.4
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 188 (451)
.+++.+|++.|...... .+-|..-|..=..+|++.|.++.|++=.+.....+. ....+|..|-.+|...|++++|
T Consensus 94 ~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp---~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP---HYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred hhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHccCcHHHH
Confidence 33455555555555421 122333444445555555555555555555544431 1344555555555555555555
Q ss_pred HHHHHHHhhCCCCCCHHHHH
Q 013010 189 LATFYRMKQFRCRPDVYAYN 208 (451)
Q Consensus 189 ~~~~~~m~~~g~~p~~~~~~ 208 (451)
.+.|++..+ +.|+-.+|-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 555555554 345544443
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.42 E-value=1.7 Score=43.65 Aligned_cols=90 Identities=19% Similarity=0.287 Sum_probs=51.7
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhH-
Q 013010 283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY- 361 (451)
Q Consensus 283 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~- 361 (451)
++-|....-.+..++...|.-++|.+.|-..- .| ..-+.+|...++|.+|.++-+...- |.+.+.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq~~~l-----~qv~tli 913 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQRFQL-----PQVQTLI 913 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHH
Confidence 34456666677777777777777766654321 12 1234566677777777776654221 111111
Q ss_pred -------------HHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 362 -------------TPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 362 -------------~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
---|..+.++|++-+|.+++.+|.+
T Consensus 914 ak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 914 AKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1124456677777777777777763
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.37 E-value=0.067 Score=38.07 Aligned_cols=61 Identities=18% Similarity=0.367 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLN----HGVPT-SSSYTPIIHALCEAGRVLEARDFLAEL 384 (451)
Q Consensus 324 t~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m 384 (451)
+|+.+-..|...|++++|+..|++..+.. ...|+ ..++..+-..|...|++++|.+++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444455555555555555555443220 00111 334445555555555555555555443
No 215
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.34 E-value=2.3 Score=39.17 Aligned_cols=157 Identities=14% Similarity=0.220 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cCC----hHHHHHHHHHhhhCCC-CCCCCHHHHHHHHHHHHhcCCc
Q 013010 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCR--VGN----FNKARFLLEQMELPGF-RCPPDVYTYTILISSYCKYGMQ 257 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~----~~~a~~~~~~m~~~g~-~~~p~~~~~~~li~~~~~~g~~ 257 (451)
+++.+.+++.|.+.|+.-+..+|-+..-.... ..+ ...|..+|+.|++.-. -..++-..+.+|+.. ...+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45677899999999999988888764433333 222 5679999999987631 123566777777665 33322
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCCHh-hHHHHHHHHHhc-CC--HHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH
Q 013010 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVV-AYNCLIDGCCKT-YR--IERALELFDDMNKKGCIPNRVTYNSFI-RYY 332 (451)
Q Consensus 258 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~-g~--~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~ 332 (451)
+. -.+.++.+|+.+.+.|+..+-. -+-+-+-+++.. .. ..++.++++.+.+.|+++....|..+- -++
T Consensus 156 e~-------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLal 228 (297)
T PF13170_consen 156 EE-------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLAL 228 (297)
T ss_pred HH-------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHh
Confidence 21 5678889999999888776533 222233333322 11 457888999999999998877776552 233
Q ss_pred HhcCC---HHHHHHHHHHHHh
Q 013010 333 SVVNE---IDKAIEMMRKMQN 350 (451)
Q Consensus 333 ~~~g~---~~~A~~~~~~m~~ 350 (451)
...+. .+...++.+.+.+
T Consensus 229 l~~~~~~~~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 229 LEDPEEKIVEEIKEVIDELKE 249 (297)
T ss_pred cCCchHHHHHHHHHHHHHHhh
Confidence 33333 3444444455444
No 216
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.32 E-value=1.4 Score=36.76 Aligned_cols=127 Identities=18% Similarity=0.159 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 013010 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318 (451)
Q Consensus 239 p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 318 (451)
|++..-..|..+..+.| +..+|...|++....-+.-|....-.+.++....+++..|...++++.+..
T Consensus 87 pTvqnr~rLa~al~elG-----------r~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~- 154 (251)
T COG4700 87 PTVQNRYRLANALAELG-----------RYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN- 154 (251)
T ss_pred hhHHHHHHHHHHHHHhh-----------hhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC-
Confidence 56655566777777777 777777777776654445566666666666777777777777777766653
Q ss_pred CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 013010 319 IP---NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381 (451)
Q Consensus 319 ~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 381 (451)
| ++.+--.+-+.|...|....|..-|+...... |+...-...-..+.+.|+.++|..-+
T Consensus 155 -pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 155 -PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred -CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 2 22334455666777777777777777776654 33322222223355666655554433
No 217
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.17 E-value=1.1 Score=42.75 Aligned_cols=48 Identities=25% Similarity=0.444 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh
Q 013010 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (451)
Q Consensus 205 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~ 253 (451)
.+|...|++..+..-++.|..+|.+.++.|+ +.+++.+++++|..++.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-~~h~vyi~~A~~E~~~~ 445 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-VGHHVYIYCAFIEYYAT 445 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-CCcceeeeHHHHHHHhc
Confidence 4444445544444445555555555555543 23455555555554443
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.14 E-value=3 Score=39.45 Aligned_cols=177 Identities=11% Similarity=0.040 Sum_probs=102.1
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CccHHhHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHHHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVLGE---EGLVNEALATFYRMKQFRCRPDVYAY 207 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~ 207 (451)
..+...++-+|....+++...++++.+....... ..+..+-....-++.+ .|+.++|++++..+....-.++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3444567777999999999999999998763111 1122223344555666 89999999999997666667889999
Q ss_pred HHHHHHHHhc---------CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 013010 208 NVVINALCRV---------GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278 (451)
Q Consensus 208 ~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m 278 (451)
..+...|-+. ...+.|...|.+--+ +.||.++=-.+...+.-.|+...... ...+....+..+
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe----~~~~~Y~GIN~AtLL~~~g~~~~~~~----el~~i~~~l~~l 292 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE----IEPDYYSGINAATLLMLAGHDFETSE----ELRKIGVKLSSL 292 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc----CCccccchHHHHHHHHHcCCcccchH----HHHHHHHHHHHH
Confidence 8887776542 225667777765433 23555444344444444453222111 111111111111
Q ss_pred -HhcCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010 279 -LFKGF---VPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316 (451)
Q Consensus 279 -~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 316 (451)
.+.|. ..|-..+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 293 lg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 293 LGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 12221 223344556666666666666666666666655
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.96 E-value=2.8 Score=41.84 Aligned_cols=226 Identities=15% Similarity=0.137 Sum_probs=121.2
Q ss_pred HHHHHHHHccCChh--HHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH----
Q 013010 136 KEMGIVFARGNNVK--GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV---- 209 (451)
Q Consensus 136 ~~ll~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---- 209 (451)
+..=.+|.+..+.. +...-++++.++|..| +. -.+...++-.|++.+|-++|.+--..+ .-...|+-
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P--~~---iLlA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMF 674 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETP--ND---LLLADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMF 674 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc--hH---HHHHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHH
Confidence 33344555544433 2233356677777544 33 134456777888999888886543221 00111111
Q ss_pred -HHHHHHhcCChHHHHHHHHHhhhC--CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH--HHHHHHHHHHHHHHhcCCC
Q 013010 210 -VINALCRVGNFNKARFLLEQMELP--GFRCPPDVYTYTILISSYCKYGMQTGCRKAIR--RRIWEANHLFRLMLFKGFV 284 (451)
Q Consensus 210 -li~~~~~~g~~~~a~~~~~~m~~~--g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~--~~~~~a~~~~~~m~~~~~~ 284 (451)
...-+...|..++-..+..+-.+. .++ .| .+....+..+|+.++|...+. +-.+-+.++-+++. .
T Consensus 675 D~aQE~~~~g~~~eKKmL~RKRA~WAr~~k-eP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~ 744 (1081)
T KOG1538|consen 675 DYAQEFLGSGDPKEKKMLIRKRADWARNIK-EP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----K 744 (1081)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHhhhcC-Cc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----h
Confidence 112233334433333332221111 111 12 234445556664444333221 12233333333322 2
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChh-----
Q 013010 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS----- 359 (451)
Q Consensus 285 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----- 359 (451)
.+..+...+..-+-+...+..|-++|..|-+. ..+++.....++|++|..+-+...+. .||+.
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaq 812 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQ 812 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc---cccccchHHH
Confidence 24455555555566777788899999887643 34677778889999999988876653 34432
Q ss_pred ------hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 013010 360 ------SYTPIIHALCEAGRVLEARDFLAELVDGGSV 390 (451)
Q Consensus 360 ------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 390 (451)
-|.-.=.+|.++|+-.+|..+++++-...+.
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVA 849 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhhh
Confidence 2444556888999999999999988765443
No 220
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.84 E-value=0.87 Score=40.49 Aligned_cols=100 Identities=15% Similarity=0.035 Sum_probs=82.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHH
Q 013010 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVVI 211 (451)
Q Consensus 134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li 211 (451)
.|+.-+..+ +.|++..|...|....+...........+--|..++...|++++|..+|..+.+.- .+--..++--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577666654 57889999999999999876666667778889999999999999999999998742 122346777777
Q ss_pred HHHHhcCChHHHHHHHHHhhhCC
Q 013010 212 NALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 212 ~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
.+..+.|+.++|..+|+++.+.-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 88899999999999999998874
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.78 E-value=1.2 Score=42.31 Aligned_cols=150 Identities=14% Similarity=0.203 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-HHhCC
Q 013010 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIERALELFDD-MNKKG 317 (451)
Q Consensus 240 ~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~g 317 (451)
-..+|...+++..+.. .++.|..+|-+..+.| +.+++..++++|..+|. |+..-|..+|+. |+..
T Consensus 396 ~t~v~C~~~N~v~r~~-----------Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f- 462 (660)
T COG5107 396 LTFVFCVHLNYVLRKR-----------GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF- 462 (660)
T ss_pred hhhHHHHHHHHHHHHh-----------hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC-
Confidence 3467888888887777 7889999999998888 67889999999987775 677888999986 4443
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 013010 318 CIPNRVTY-NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT--SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394 (451)
Q Consensus 318 ~~p~~~t~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 394 (451)
||...| +-.+..+...++-..|..+|+.....- .-+ ...|..+|.-=..-|+...|..+-+.|.+ +.|...
T Consensus 463 --~d~~~y~~kyl~fLi~inde~naraLFetsv~r~--~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen 536 (660)
T COG5107 463 --PDSTLYKEKYLLFLIRINDEENARALFETSVERL--EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQEN 536 (660)
T ss_pred --CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH--HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHh
Confidence 454444 456777788899999999998544321 112 46888899888888999888888888776 456666
Q ss_pred HHHHHHHHHHhcCC
Q 013010 395 TYKLVCDALNAAEE 408 (451)
Q Consensus 395 t~~~li~~~~~~g~ 408 (451)
+...+.+-|.-..+
T Consensus 537 ~~evF~Sry~ik~d 550 (660)
T COG5107 537 LIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHHHHHHhhhcc
Confidence 66666555554443
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.63 E-value=4.1 Score=38.54 Aligned_cols=102 Identities=18% Similarity=0.086 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCCCC-CccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHh---cCChHH
Q 013010 150 GLWDFLKDMSRRGNGE-LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR---CRPDVYAYNVVINALCR---VGNFNK 222 (451)
Q Consensus 150 ~a~~~~~~m~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~ 222 (451)
+..+.+..|..+-..+ ..+..+.-.++-+|-...+++...++++.|...- +.-....--...-++.+ .|+.++
T Consensus 121 ~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~ 200 (374)
T PF13281_consen 121 ELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREK 200 (374)
T ss_pred HHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHH
Confidence 3444455555442221 2344445566667999999999999999998741 11122222233345556 899999
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh
Q 013010 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (451)
Q Consensus 223 a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~ 253 (451)
|++++..+..... .++..+|..+.+.|-.
T Consensus 201 Al~il~~~l~~~~--~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 201 ALQILLPVLESDE--NPDPDTLGLLGRIYKD 229 (374)
T ss_pred HHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 9999999555443 3788888888877744
No 223
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=3.1 Score=37.56 Aligned_cols=99 Identities=17% Similarity=0.099 Sum_probs=78.3
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHhhhCCCCCCCCHHHH
Q 013010 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG---NFNKARFLLEQMELPGFRCPPDVYTY 244 (451)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~p~~~~~ 244 (451)
|...|-.|-..|...|+.+.|..-|....+.. .++...+..+..++.... .-.++..+|+++..... -|+.+.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~---~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP---ANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC---ccHHHH
Confidence 77789999999999999999999999887742 345666666666555432 24578899999988763 477788
Q ss_pred HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281 (451)
Q Consensus 245 ~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~ 281 (451)
..|...+...| ++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g-----------~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQG-----------DYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcc-----------cHHHHHHHHHHHHhc
Confidence 88888899999 899999999999876
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.57 E-value=0.77 Score=43.10 Aligned_cols=271 Identities=16% Similarity=0.080 Sum_probs=146.7
Q ss_pred hhhcCHHHHHHHHHHHhhcCCCC---CCHHhHHHHHHHHHccCChhHHHHHHHH--HHHcCCCC-CccHHhHHHHHHHHH
Q 013010 107 KVTLGLNKATEFYHWVERFFDFF---HNEMTCKEMGIVFARGNNVKGLWDFLKD--MSRRGNGE-LVTTSSVTCLIKVLG 180 (451)
Q Consensus 107 ~~~~~~~~A~~~f~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~--m~~~~~~~-~~~~~~~~~li~~~~ 180 (451)
...|+.+.-+++|+..... |-. .=..+|..|..+|.-.+++++|.++... ...+-... .-...+...|-+.+-
T Consensus 28 ck~gdcraGv~ff~aA~qv-GTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 28 CKMGDCRAGVDFFKAALQV-GTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HhccchhhhHHHHHHHHHh-cchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 3457788888899888753 321 1234677777788888899999888632 11110000 001122233444444
Q ss_pred hcCCHHHHHHHHHH----HhhCCC-CCCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHh----h
Q 013010 181 EEGLVNEALATFYR----MKQFRC-RPDVYAYNVVINALCRVGN--------------------FNKARFLLEQM----E 231 (451)
Q Consensus 181 ~~g~~~~A~~~~~~----m~~~g~-~p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m----~ 231 (451)
-.|.+++|+-.-.+ ..+.|- ......+-.+.+.|...|+ ++.|.++|.+= .
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566655433211 112110 1123334444555554443 23344444331 2
Q ss_pred hCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 013010 232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311 (451)
Q Consensus 232 ~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 311 (451)
+.|-. -.--..|..|-+.|.-.|+++.+...-+.++.-|.++=++. .....+..+-+++.-.|+++.|.+.|+
T Consensus 187 ~lgDr-~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrA------aeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 187 KLGDR-LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRA------AERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HhhhH-HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHH------HHHHhhcccchhhhhhcccHhHHHHHH
Confidence 22210 01223455566666666633333222222222222222222 233567788889999999999999887
Q ss_pred HHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 013010 312 DMN----KKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN----LNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382 (451)
Q Consensus 312 ~m~----~~g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 382 (451)
.-. +.|-+ ....+.-+|-++|.-..++++|+.++.+-.. .+-..-....|-.|-.+|...|..++|+.+..
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 643 22322 2345556678888888899999988875332 11112345788889999999999999988776
Q ss_pred HHH
Q 013010 383 ELV 385 (451)
Q Consensus 383 ~m~ 385 (451)
.-+
T Consensus 340 ~hl 342 (639)
T KOG1130|consen 340 LHL 342 (639)
T ss_pred HHH
Confidence 544
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.55 E-value=3.2 Score=40.33 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=43.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013010 293 LIDGCCKTYRIERALELFDDMNKKG-CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368 (451)
Q Consensus 293 li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 368 (451)
+..++-+.|+.++|.+.+++|.+.. ..-+......|+.++...+.+.++..++.+..+....+.-...|+..+-.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 4444456677777777777776542 111233455677777777777777777777654332122233455544333
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.52 E-value=2.5 Score=41.87 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCC----CHHHHHHHHHHHHhc--CCchhhhHHHHHHHHHHHHHHHHHH
Q 013010 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPP----DVYTYTILISSYCKY--GMQTGCRKAIRRRIWEANHLFRLML 279 (451)
Q Consensus 206 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p----~~~~~~~li~~~~~~--g~~~~~~~~~~~~~~~a~~~~~~m~ 279 (451)
.+..+++..+-.|+-+.+++.+.+-.+.+.-..| -.-+|+..+..++.. +. ...+.|.+++..+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~---------~~~~~a~~lL~~~~ 260 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGED---------VPLEEAEELLEEML 260 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccC---------CCHHHHHHHHHHHH
Confidence 3455666677789999999988876654321111 123466666666655 21 17889999999998
Q ss_pred hcCCCCCHhhHHHHH-HHHHhcCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 013010 280 FKGFVPDVVAYNCLI-DGCCKTYRIERALELFDDMNKKG--C-IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355 (451)
Q Consensus 280 ~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g--~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 355 (451)
++ -|+...|...- ..+...|++++|.+.|+...... . +.....+--+...+.-.+++++|.+.|..+.+.. .
T Consensus 261 ~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~ 336 (468)
T PF10300_consen 261 KR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--K 336 (468)
T ss_pred Hh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--c
Confidence 76 67877775544 34567899999999999765321 1 1234445556667888999999999999999876 3
Q ss_pred CChhhHHHHHHH-HHHcCCH-------HHHHHHHHHHH
Q 013010 356 PTSSSYTPIIHA-LCEAGRV-------LEARDFLAELV 385 (451)
Q Consensus 356 p~~~~~~~li~~-~~~~g~~-------~~A~~l~~~m~ 385 (451)
-+..+|.-+..+ +...|+. ++|.++|.+..
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 445555554443 3445766 88888888765
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.44 E-value=0.85 Score=43.78 Aligned_cols=64 Identities=19% Similarity=0.073 Sum_probs=51.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR----VTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351 (451)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (451)
+...++.+-.+|.+.|++++|...|+...+. .|+. .+|..+-.+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888888888889999999998887766 4653 35888888888889999999998888875
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.33 E-value=2 Score=33.71 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC
Q 013010 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282 (451)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~ 282 (451)
+....+..++.+...|+-|.-.+++.++.+.+ .++....-.+..+|.+.| +..++.+++.+.-+.|
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~---~~~p~~L~kia~Ay~klg-----------~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE---EINPEFLVKIANAYKKLG-----------NTREANELLKEACEKG 150 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHhc-----------chhhHHHHHHHHHHhc
Confidence 45667788889999999999999999987644 378888899999999999 8889999999998888
Q ss_pred CC
Q 013010 283 FV 284 (451)
Q Consensus 283 ~~ 284 (451)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.25 E-value=1.4 Score=35.35 Aligned_cols=78 Identities=14% Similarity=0.057 Sum_probs=52.0
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 013010 139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216 (451)
Q Consensus 139 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 216 (451)
.....+.|++++|.+.|+.+..+-........+--.|+.+|.+.+++++|...+++..+..-..--.-|-..+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 333455788888888888888876544455666677888888888888888888888775322222344444444443
No 230
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.18 E-value=0.64 Score=41.95 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 013010 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD-----GGSVPREYTY 396 (451)
Q Consensus 322 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~ 396 (451)
..++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3455667777777788888888888887766 67777888888888888888888888777653 5888888877
Q ss_pred HHHHHHHH
Q 013010 397 KLVCDALN 404 (451)
Q Consensus 397 ~~li~~~~ 404 (451)
....+...
T Consensus 231 ~~y~~~~~ 238 (280)
T COG3629 231 ALYEEILR 238 (280)
T ss_pred HHHHHHhc
Confidence 77766633
No 231
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.78 E-value=2.9 Score=33.53 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 013010 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324 (451)
Q Consensus 245 ~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 324 (451)
..++..+...+ .......+++.+...+ ..+....|.++..|++... .+..+.+.. .++...
T Consensus 11 ~~vv~~~~~~~-----------~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd 71 (140)
T smart00299 11 SEVVELFEKRN-----------LLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYD 71 (140)
T ss_pred HHHHHHHHhCC-----------cHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCC
Confidence 45666776666 6778888888887766 3677788888888887643 344444442 123344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013010 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403 (451)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 403 (451)
....+..|.+.+.++++..++..+.. |...+..+... ++++.|.+++.+- -+...|..++..+
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~ 135 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHH
Confidence 45577777777888888888766532 22233333344 7777777776641 2555677776666
Q ss_pred Hh
Q 013010 404 NA 405 (451)
Q Consensus 404 ~~ 405 (451)
..
T Consensus 136 l~ 137 (140)
T smart00299 136 LD 137 (140)
T ss_pred Hc
Confidence 54
No 232
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.74 E-value=2.7 Score=33.04 Aligned_cols=143 Identities=13% Similarity=0.149 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013010 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344 (451)
Q Consensus 265 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 344 (451)
.|.+++..++..+...+. +..-||-+|--....-+-+-..++++..-+ -.|.. .+|++......
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi~C 78 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVIEC 78 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHHHH
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHHHH
Confidence 356666666666655432 344455555444444333344444444332 22322 22333333333
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhch
Q 013010 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI 424 (451)
Q Consensus 345 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~ 424 (451)
+-.+ ..+.......++.+...|+-+.-.+++.++.+ +-.+++...-.+..||.+-|+..++.+++.+.=++|+
T Consensus 79 ~~~~------n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 79 YAKR------NKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHT------T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHh------cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2221 12345566677888888888888888888875 3456777888889999999999999999999889998
Q ss_pred HHHHHH
Q 013010 425 EYRFRQ 430 (451)
Q Consensus 425 ~~~~~~ 430 (451)
+.....
T Consensus 152 kEAC~n 157 (161)
T PF09205_consen 152 KEACRN 157 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 775544
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.65 E-value=2.3 Score=33.31 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=24.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 297 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
++..|+++.|++.|.+.... .+-....||.=..+|.-.|+.++|++=+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34444555555555444332 111344444444444445555555544444444
No 234
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.62 E-value=5.6 Score=36.33 Aligned_cols=15 Identities=20% Similarity=0.118 Sum_probs=9.6
Q ss_pred HHHcCCHHHHHHHHH
Q 013010 368 LCEAGRVLEARDFLA 382 (451)
Q Consensus 368 ~~~~g~~~~A~~l~~ 382 (451)
+.+.+++++|.+.|+
T Consensus 256 ~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYE 270 (278)
T ss_pred HHhhcCHHHHHHHHH
Confidence 345567777777765
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.61 E-value=1.2 Score=39.56 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=74.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-hhhHHHHH
Q 013010 289 AYNCLIDGCCKTYRIERALELFDDMNKKGC--IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT-SSSYTPII 365 (451)
Q Consensus 289 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li 365 (451)
.|+.-+.. .+.|++..|...|....+..- .-....+-.|-.++...|++++|..+|..+.+.....|- +.++--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 57776664 566789999999999887631 113344556888999999999999999998876543333 25677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 013010 366 HALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 366 ~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
....+.|+.++|+..|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888999999999999998865
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.37 E-value=4.4 Score=40.14 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhc-CCCCC-----HhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhc
Q 013010 267 RIWEANHLFRLMLFK-GFVPD-----VVAYNCLIDGCCK----TYRIERALELFDDMNKKGCIPNRVTYNSFI-RYYSVV 335 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~-~~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~~~ 335 (451)
+-+.+++.+.+-.+. ++.-. .-+|..++..++. ....+.|.++++.+.+. -|+...|...- +.+...
T Consensus 203 dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 203 DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLK 280 (468)
T ss_pred cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHh
Confidence 667777777765543 33322 2335556655554 45688999999999987 68887776553 445678
Q ss_pred CCHHHHHHHHHHHHhcCC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCC---
Q 013010 336 NEIDKAIEMMRKMQNLNH--GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV-CDALNAAEEP--- 409 (451)
Q Consensus 336 g~~~~A~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-i~~~~~~g~~--- 409 (451)
|++++|++.|++...... .......+--+.-.+.-.+++++|.+.|..+.+..- -+..+|.-+ .-++...|+.
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhh
Confidence 999999999997654221 123334455566678888999999999999997532 233344433 3344556666
Q ss_pred ----chHHHHHHHH
Q 013010 410 ----SLLDDGLRKR 419 (451)
Q Consensus 410 ----~~a~~~~~~~ 419 (451)
++|.+.+.+.
T Consensus 360 ~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 360 KEHKKEAEELFRKV 373 (468)
T ss_pred hhhHHHHHHHHHHH
Confidence 4455555443
No 237
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.26 E-value=0.98 Score=40.77 Aligned_cols=77 Identities=18% Similarity=0.145 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCCCHHHHH
Q 013010 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYTYT 245 (451)
Q Consensus 171 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~p~~~~~~ 245 (451)
++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+. |...+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~--P~~~~~~ 231 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID--PAPELRA 231 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC--ccHHHHH
Confidence 45556666666666666666666665543 33556666666666666666666666655543 3433 5555555
Q ss_pred HHHHH
Q 013010 246 ILISS 250 (451)
Q Consensus 246 ~li~~ 250 (451)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55554
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.25 E-value=1.8 Score=42.31 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=92.2
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 013010 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223 (451)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 223 (451)
-.++++++.++...- .+-|.....-.+.++.-+-+.|..+.|+++..+-.. -.....+.|+++.|
T Consensus 273 ~~~d~~~v~~~i~~~---~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 273 LRGDFEEVLRMIAAS---NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIA 337 (443)
T ss_dssp HTT-HHH-----HHH---HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHH
T ss_pred HcCChhhhhhhhhhh---hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHH
Confidence 357777766665310 011111233477788888888888888877543221 23345667888888
Q ss_pred HHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 013010 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI 303 (451)
Q Consensus 224 ~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 303 (451)
.++.++. ++...|..|.+...+.| +++-|++.|.+... |..|+-.|.-.|+.
T Consensus 338 ~~~a~~~--------~~~~~W~~Lg~~AL~~g-----------~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 338 LEIAKEL--------DDPEKWKQLGDEALRQG-----------NIELAEECYQKAKD---------FSGLLLLYSSTGDR 389 (443)
T ss_dssp HHHCCCC--------STHHHHHHHHHHHHHTT-----------BHHHHHHHHHHCT----------HHHHHHHHHHCT-H
T ss_pred HHHHHhc--------CcHHHHHHHHHHHHHcC-----------CHHHHHHHHHhhcC---------ccccHHHHHHhCCH
Confidence 6654322 46678888888888888 78888888776542 45677777778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348 (451)
Q Consensus 304 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 348 (451)
+...++.+.....|- +|.-..++.-.|+++++.+++.+-
T Consensus 390 ~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 390 EKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777777777766652 555555666677777777776543
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.21 E-value=6.8 Score=36.06 Aligned_cols=118 Identities=15% Similarity=0.026 Sum_probs=53.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCCCCHHHHHHHHHHHHhcCCchhh
Q 013010 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP-GFRCPPDVYTYTILISSYCKYGMQTGC 260 (451)
Q Consensus 182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~p~~~~~~~li~~~~~~g~~~~~ 260 (451)
.|+..+|-..++++.+ ..+-|...++..=.+|.-.|+.+.....+++.... +-..|...+.-..+.-++...|
T Consensus 116 ~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g----- 189 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG----- 189 (491)
T ss_pred cccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc-----
Confidence 3455555555555554 23445555555555555555555555555555433 1111111122222333344444
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 013010 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD 312 (451)
Q Consensus 261 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 312 (451)
-+++|++.-++..+.+ +.|.-.-.++...+--.|++.++.+...+
T Consensus 190 ------~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 190 ------IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred ------cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 4445555444444322 22334444444444455555555554433
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.15 E-value=3.1 Score=40.71 Aligned_cols=156 Identities=16% Similarity=0.120 Sum_probs=103.6
Q ss_pred HHHHhcCCHHHHHHHHH--HHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc
Q 013010 177 KVLGEEGLVNEALATFY--RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (451)
Q Consensus 177 ~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~ 254 (451)
....-.++++++.++.+ ++.. .+ +....+.++.-+-+.|..+.|+++..+-. .-.....+.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------------~rFeLAl~l 331 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD--------------HRFELALQL 331 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------------HHHHHHHHC
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH--------------HHhHHHHhc
Confidence 44455788888777775 2221 12 25557888888888999999988754422 223455677
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334 (451)
Q Consensus 255 g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 334 (451)
| +++.|.++.++. .+...|..|-....+.|+++-|++.|....+ |..|+-.|.-
T Consensus 332 g-----------~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~ 385 (443)
T PF04053_consen 332 G-----------NLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSS 385 (443)
T ss_dssp T------------HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHH
T ss_pred C-----------CHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHH
Confidence 7 788887765433 3677999999999999999999999987553 6677778888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 013010 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382 (451)
Q Consensus 335 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 382 (451)
.|+.++-.++.+.....|. ++..+.++.-.|+.++..+++.
T Consensus 386 ~g~~~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 386 TGDREKLSKLAKIAEERGD-------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp CT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHccC-------HHHHHHHHHHcCCHHHHHHHHH
Confidence 9999888888888777662 5666666777788888877764
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=2.5 Score=39.80 Aligned_cols=95 Identities=13% Similarity=0.044 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 367 (451)
.+++.+.-+|.+.+++.+|++.-+.....+ ++|....-.=-.+|...|+++.|+..|+.+.+.. +-|...-+-|+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 445666667777777777777777766653 3355444444556677777777777777777754 3343334444444
Q ss_pred HHHcCCHH-HHHHHHHHHH
Q 013010 368 LCEAGRVL-EARDFLAELV 385 (451)
Q Consensus 368 ~~~~g~~~-~A~~l~~~m~ 385 (451)
--+..... ...++|..|.
T Consensus 335 ~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 33433333 3355666665
No 242
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.93 E-value=3 Score=35.18 Aligned_cols=100 Identities=7% Similarity=-0.033 Sum_probs=72.1
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
...+..+...|++.|+.+.|.+.+.++.+....+..-...+-.+|+.....+++..+.....+....--.+.......=+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 34688899999999999999999999988766655556677788899999999999998887776532122212222112
Q ss_pred HH-----HHhcCChHHHHHHHHHhh
Q 013010 212 NA-----LCRVGNFNKARFLLEQME 231 (451)
Q Consensus 212 ~~-----~~~~g~~~~a~~~~~~m~ 231 (451)
.+ +...+++..|-+.|-+..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 21 234688999888887664
No 243
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=0.72 Score=41.70 Aligned_cols=104 Identities=12% Similarity=0.146 Sum_probs=78.7
Q ss_pred CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcC---CCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 013010 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203 (451)
Q Consensus 127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 203 (451)
|.+.+..+...++..-....+++.+...+-++.... ..+.-+.++|-.++. .-+.++++.++..=.+.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 566666777777777777788899988887776542 122223333333332 3477799999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010 204 VYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
.++++.+|+.+.+.+++.+|.++...|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887654
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.19 E-value=5.1 Score=32.07 Aligned_cols=44 Identities=7% Similarity=0.163 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 013010 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217 (451)
Q Consensus 173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 217 (451)
..++..+...+.......+++.+...+. .+...+|.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 3444444444555555555555544442 3444455555555443
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=92.03 E-value=12 Score=36.23 Aligned_cols=150 Identities=11% Similarity=0.041 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHhhcCCCCCCH-HhHHHHHHHHH---------ccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHH
Q 013010 111 GLNKATEFYHWVERFFDFFHNE-MTCKEMGIVFA---------RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG 180 (451)
Q Consensus 111 ~~~~A~~~f~~~~~~~~~~~~~-~~~~~ll~~~~---------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~ 180 (451)
+.+.|+.+|+.........|+- ..|..+...+. ......+|.++.+...+.+. .|......+-.+..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~---~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT---VDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHH
Confidence 4789999999988544555553 33333333222 12345667777777777763 36666677777777
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCCCCHHHHHHHHHHHHhcCCch
Q 013010 181 EEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPG-FRCPPDVYTYTILISSYCKYGMQT 258 (451)
Q Consensus 181 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~p~~~~~~~li~~~~~~g~~~ 258 (451)
-.++++.|..+|++.... .|| ..+|-..--.+.-+|+.++|...+++..+.. .+ .-.......++.|+..+
T Consensus 350 ~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~--~~~~~~~~~~~~~~~~~--- 422 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR--RKAVVIKECVDMYVPNP--- 422 (458)
T ss_pred hhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh--hHHHHHHHHHHHHcCCc---
Confidence 888899999999999874 455 3444444444566899999999999955443 11 23344555666888774
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 013010 259 GCRKAIRRRIWEANHLFRLML 279 (451)
Q Consensus 259 ~~~~~~~~~~~~a~~~~~~m~ 279 (451)
++.|.+++-+-.
T Consensus 423 ---------~~~~~~~~~~~~ 434 (458)
T PRK11906 423 ---------LKNNIKLYYKET 434 (458)
T ss_pred ---------hhhhHHHHhhcc
Confidence 778888775433
No 246
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=12 Score=35.60 Aligned_cols=82 Identities=12% Similarity=0.053 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhc---CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-H--HHHHHhcCCHHH
Q 013010 267 RIWEANHLFRLMLFK---GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS-F--IRYYSVVNEIDK 340 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-l--i~~~~~~g~~~~ 340 (451)
++..|.+.|.+.... +..++...|.....+..+.|+.++|+.--++..+. |..-.-. + -+++...+.|++
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666555432 23344444554455555566666665555544433 2211111 1 122333455666
Q ss_pred HHHHHHHHHhcC
Q 013010 341 AIEMMRKMQNLN 352 (451)
Q Consensus 341 A~~~~~~m~~~~ 352 (451)
|.+-++...+..
T Consensus 340 AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 340 AVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHhhc
Confidence 666665555443
No 247
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.78 E-value=22 Score=38.53 Aligned_cols=76 Identities=13% Similarity=0.208 Sum_probs=37.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 013010 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378 (451)
Q Consensus 299 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 378 (451)
..+.+++|.-+|+..-+. .--+.+|-.+|+|++|+.+-.++..... --..+-..|+.-+...+++-+|.
T Consensus 951 ~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~d--e~~~~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen 951 EELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKD--ELVILAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred HhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHH--HHHHHHHHHHHHHHHcccchhHH
Confidence 345555555555443221 1234556666666666666665543110 00111144555566666666666
Q ss_pred HHHHHHH
Q 013010 379 DFLAELV 385 (451)
Q Consensus 379 ~l~~~m~ 385 (451)
++..+-.
T Consensus 1020 ~il~e~~ 1026 (1265)
T KOG1920|consen 1020 KILLEYL 1026 (1265)
T ss_pred HHHHHHh
Confidence 6655544
No 248
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.77 E-value=6.7 Score=32.53 Aligned_cols=138 Identities=15% Similarity=0.119 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 271 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
..++++.+.+.+++|+...|..++..+.+.|++... ..+...++-+|.......+-.+... ...+.++--+|.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHH
Confidence 456667777889999999999999999999986654 5555667777877776666444432 2334444444443
Q ss_pred cCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423 (451)
Q Consensus 351 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g 423 (451)
+= ...+..+++.+...|++-+|.++.+..... +......++++..+.++......+++-...++
T Consensus 87 RL-----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 87 RL-----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred Hh-----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 21 125667888899999999999998775322 11223557888888888887766666444443
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=91.63 E-value=12 Score=36.28 Aligned_cols=172 Identities=9% Similarity=-0.001 Sum_probs=105.0
Q ss_pred HHH--HHHHHHHHhcC-----ChHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHH
Q 013010 205 YAY--NVVINALCRVG-----NFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276 (451)
Q Consensus 205 ~~~--~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~ 276 (451)
..| ...+.+..... ..+.|+.+|.+.....- ..|+ ...|..+..++...--. +-.. ......+|.++-+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~-ldp~~a~a~~~lA~~h~~~~~~-g~~~-~~~~~~~a~~~A~ 328 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSD-IQTLKTECYCLLAECHMSLALH-GKSE-LELAAQKALELLD 328 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhccc-CCcccHHHHHHHHHHHHHHHHh-cCCC-chHHHHHHHHHHH
Confidence 456 66666655422 25678889998882221 1243 44555554444332100 0000 1126677888888
Q ss_pred HHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 013010 277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355 (451)
Q Consensus 277 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 355 (451)
...+.+ +-|......+-.+..-.++++.|...|++.... .|| ..+|-..-....-.|+.++|.+.+++..+.....
T Consensus 329 rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 329 YVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 777764 446666666666677788899999999998776 464 4555555555667899999999999977654322
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 013010 356 PTSSSYTPIIHALCEAGRVLEARDFLAE 383 (451)
Q Consensus 356 p~~~~~~~li~~~~~~g~~~~A~~l~~~ 383 (451)
--.......++.|+..+ +++|.++|-+
T Consensus 406 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 406 RKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred hHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 23334444455666554 6788887643
No 250
>PRK15331 chaperone protein SicA; Provisional
Probab=91.53 E-value=6.9 Score=32.22 Aligned_cols=89 Identities=10% Similarity=-0.009 Sum_probs=66.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 013010 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374 (451)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 374 (451)
.-+...|++++|..+|.-+..-+.- +..-|..|-.+|-..+++++|+..|...-.... -|+..+-..-.+|...|+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHHHhCCH
Confidence 3456789999999999987765322 455566777777788999999999988766553 3333344455678899999
Q ss_pred HHHHHHHHHHHh
Q 013010 375 LEARDFLAELVD 386 (451)
Q Consensus 375 ~~A~~l~~~m~~ 386 (451)
+.|...|...++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988876
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.51 E-value=15 Score=35.97 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH
Q 013010 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NR 322 (451)
Q Consensus 245 ~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~ 322 (451)
..+..++-+.| +.++|.+.|++|.+.. ..-+......|+.++...+.+.++..++.+-.+...+. -.
T Consensus 263 rRLAmCarklG-----------r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAt 331 (539)
T PF04184_consen 263 RRLAMCARKLG-----------RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSAT 331 (539)
T ss_pred HHHHHHHHHhC-----------ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHH
Confidence 44666667777 8899999999987542 11234466778999999999999999998875433221 24
Q ss_pred HHHHHHHHH
Q 013010 323 VTYNSFIRY 331 (451)
Q Consensus 323 ~t~~~li~~ 331 (451)
.+|+..+-.
T Consensus 332 i~YTaALLk 340 (539)
T PF04184_consen 332 ICYTAALLK 340 (539)
T ss_pred HHHHHHHHH
Confidence 556654433
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.39 E-value=6.8 Score=40.49 Aligned_cols=213 Identities=15% Similarity=0.129 Sum_probs=122.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHc--------------CCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 013010 134 TCKEMGIVFARGNNVKGLWDFLKDMSRR--------------GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199 (451)
Q Consensus 134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 199 (451)
..+.++.+|...+++-.-.-++.++.+. |............-|..+++...++-|..+-+.-.
T Consensus 285 s~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~--- 361 (933)
T KOG2114|consen 285 SSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQH--- 361 (933)
T ss_pred chhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcC---
Confidence 4556666666666554433333333221 11112233345566777777777887777654432
Q ss_pred CCCCHHHHHHHH----HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHH
Q 013010 200 CRPDVYAYNVVI----NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275 (451)
Q Consensus 200 ~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~ 275 (451)
.|..+...+. +-+.+.|++++|...|-+-... +.|.. +|.-|.... ++.+-..++
T Consensus 362 --~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le~s~-----Vi~kfLdaq-----------~IknLt~YL 420 (933)
T KOG2114|consen 362 --LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF---LEPSE-----VIKKFLDAQ-----------RIKNLTSYL 420 (933)
T ss_pred --CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---CChHH-----HHHHhcCHH-----------HHHHHHHHH
Confidence 2333333333 3445678899998888776532 22432 344554444 677777888
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 013010 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354 (451)
Q Consensus 276 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 354 (451)
+.+.+.|+. +...-..|+++|.+.++.+.-.+..+... .|.. .|. ...+..+.+.+-.++|..+-.....+
T Consensus 421 e~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~~~h--- 492 (933)
T KOG2114|consen 421 EALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDV---ETALEILRKSNYLDEAELLATKFKKH--- 492 (933)
T ss_pred HHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeH---HHHHHHHHHhChHHHHHHHHHHhccC---
Confidence 888887764 55556778899999998888777776554 3322 132 33455555666666666665544321
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010 355 VPTSSSYTPIIHALCEAGRVLEARDFLAEL 384 (451)
Q Consensus 355 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 384 (451)
...... .+-..|++++|.+++..|
T Consensus 493 ---e~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 493 ---EWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred ---HHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 122222 345567778887777654
No 253
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.39 E-value=0.84 Score=41.28 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=48.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHH
Q 013010 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFR---CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245 (451)
Q Consensus 169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~ 245 (451)
..+...++..-....+++.+...+-.++..- ..|+... .+++..|. .-+.++++.++..=..-|+- ||-++++
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF--~dqf~~c 139 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIF--PDQFTFC 139 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccc--cchhhHH
Confidence 3344445544444556666666665555421 1121111 12222222 22445666666665666644 6666666
Q ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280 (451)
Q Consensus 246 ~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~ 280 (451)
.+|+.+.+.+ ++.+|..+...|..
T Consensus 140 ~l~D~flk~~-----------n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKE-----------NYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcc-----------cHHHHHHHHHHHHH
Confidence 6666666666 55566655555543
No 254
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.12 E-value=6.9 Score=31.50 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNH----GVPTSSSYTPIIHALCEAGR-VLEARDFLAELVDGGSVPREYTYKLV 399 (451)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l 399 (451)
.|+++...+..+++.....+++.+..... +..+..+|.+++.+.++..- ---+..+|+-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35555555555666666666555532211 13456678888888866655 33456677888777888888888888
Q ss_pred HHHHHhcCCCchH
Q 013010 400 CDALNAAEEPSLL 412 (451)
Q Consensus 400 i~~~~~~g~~~~a 412 (451)
|.++.+.-..+..
T Consensus 122 i~~~l~g~~~~~~ 134 (145)
T PF13762_consen 122 IKAALRGYFHDSL 134 (145)
T ss_pred HHHHHcCCCCcch
Confidence 8888877555544
No 255
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.94 E-value=2.9 Score=35.18 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 206 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
.+..+...|++.|+.+.|.+.|.++.+.......-...+-.+|+.....+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~ 87 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG 87 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 34455555555666666666665555543321112233444555555555
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=90.78 E-value=3.3 Score=34.03 Aligned_cols=92 Identities=11% Similarity=-0.056 Sum_probs=68.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 013010 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217 (451)
Q Consensus 138 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 217 (451)
...-+-..|++++|..+|.-+...+.. +..-|..|..++-..+++++|...|...-..+. -|...+--.-.+|...
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l 118 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHh
Confidence 344455689999999999998886533 444466677777778999999999987765442 3444455556778889
Q ss_pred CChHHHHHHHHHhhhC
Q 013010 218 GNFNKARFLLEQMELP 233 (451)
Q Consensus 218 g~~~~a~~~~~~m~~~ 233 (451)
|+.+.|...|+.....
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999888764
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.01 E-value=9.6 Score=39.46 Aligned_cols=168 Identities=16% Similarity=0.096 Sum_probs=87.6
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
......-++.+.+...++-|..+... .+.+++........-.+-+.+.|++++|...|-+-... ++|+ -+|
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 34555566666777777777666433 22221111111222222233467777777766655431 2222 234
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHH--------HHHHHHHHHHHHH----
Q 013010 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------RIWEANHLFRLML---- 279 (451)
Q Consensus 212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~--------~~~~a~~~~~~m~---- 279 (451)
.-|..+.++..--.+++.+.+.|.. +...-+.|+.+|.+.++.++..+.+++ +++.|.+++.+..
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla---~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA---NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDE 481 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc---cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHH
Confidence 4455555566666677777777763 555566677777777766666655542 3455555443221
Q ss_pred ----hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010 280 ----FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314 (451)
Q Consensus 280 ----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 314 (451)
.....-.....+. .+-..+++++|.+.++.|.
T Consensus 482 a~~LA~k~~~he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKKHEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhccCHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 0011112222222 2345677888888887654
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.96 E-value=13 Score=32.91 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=33.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 293 LIDGCCKTYRIERALELFDDMNKKGCIPN---RVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 293 li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
+..-|.+.|.+..|..-+++|.+. .+-+ ....-.+..+|...|..++|...-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 345566777777777777777665 2212 23344455666667766666665554443
No 259
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.86 E-value=22 Score=36.10 Aligned_cols=185 Identities=14% Similarity=0.022 Sum_probs=113.9
Q ss_pred hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc--CCchhhhHHHHHHHHHHHHHHHHHHh-------cCCCCCHhhH
Q 013010 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY--GMQTGCRKAIRRRIWEANHLFRLMLF-------KGFVPDVVAY 290 (451)
Q Consensus 220 ~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~--g~~~~~~~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~ 290 (451)
...|.++++...+.|. ...-..+..+|..- |.. ++.+.|...|....+ .| +....
T Consensus 228 ~~~a~~~~~~~a~~g~-----~~a~~~~g~~y~~G~~g~~--------~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~ 291 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-----SEAQYALGICYLAGTYGVT--------QDLESAIEYLKLAAESFKKAATKG---LPPAQ 291 (552)
T ss_pred hhHHHHHHHHHHhhcc-----hHHHHHHHHHHhhcccccc--------ccHHHHHHHHHHHHHHHHHHHhhc---CCccc
Confidence 4578889998888873 33333333333222 211 278888888887766 44 33455
Q ss_pred HHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010 291 NCLIDGCCKTY-----RIERALELFDDMNKKGCIPNRVTYNSFIRYYSV-VNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364 (451)
Q Consensus 291 ~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 364 (451)
+-+-.+|.+.. +.+.|..++....+.|. |+...+-..+..... ..+...|.++|...-+.|. +....+-.+
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~ 368 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--ILAIYRLAL 368 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence 66666666643 56779999999888874 455554444333333 3567899999999999885 333333333
Q ss_pred HHHHH--HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhchH
Q 013010 365 IHALC--EAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE 425 (451)
Q Consensus 365 i~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~ 425 (451)
+.... -..+...|..++++..+.| .|...--...+..+.. +..+.+.-.+..+...|.+
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 32222 2347889999999999988 3432222233344444 7777666666666655554
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.85 E-value=8.5 Score=30.88 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=52.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 013010 297 CCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG 372 (451)
Q Consensus 297 ~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 372 (451)
..+.|++++|.+.|+.+...- -+-....--.|+.+|.+.+++++|...+++..+.+...|+ .-|...+.+++.-.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence 456788999999998887651 1114456667888888999999999999988887654443 45666666655543
No 261
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.61 E-value=19 Score=34.24 Aligned_cols=189 Identities=13% Similarity=0.068 Sum_probs=113.5
Q ss_pred CCHHHHHHHHH-HHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010 202 PDVYAYNVVIN-ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280 (451)
Q Consensus 202 p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~ 280 (451)
|...+|..+-. ++.-.|+.++|.++-....+.. .+..+...+++.+---. .+.+.|...|++-+.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-----~~n~~al~vrg~~~yy~---------~~~~ka~~hf~qal~ 231 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-----ATNAEALYVRGLCLYYN---------DNADKAINHFQQALR 231 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-----cchhHHHHhcccccccc---------cchHHHHHHHhhhhc
Confidence 44455554433 3456788888888877666554 22344444444332210 055566666665543
Q ss_pred cCCCCCHhhHHH-------------HHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013010 281 KGFVPDVVAYNC-------------LIDGCCKTYRIERALELFDDMNKK---GCIPNRVTYNSFIRYYSVVNEIDKAIEM 344 (451)
Q Consensus 281 ~~~~~~~~~~~~-------------li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~A~~~ 344 (451)
. -|+...-.. =-+-..+.|++..|.+.|.+.... ++.|+...|...-....+.|+.++|+.-
T Consensus 232 l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisd 309 (486)
T KOG0550|consen 232 L--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISD 309 (486)
T ss_pred c--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhh
Confidence 3 233222111 112346789999999999997754 4566777788888888899999999999
Q ss_pred HHHHHhcCCCCCChhhHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCCc
Q 013010 345 MRKMQNLNHGVPTSSSYTPIIHA--LCEAGRVLEARDFLAELVDGGSVP-REYTYKLVCDALNAAEEPS 410 (451)
Q Consensus 345 ~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~ 410 (451)
.++..+... ......+.++ +...+++++|.+-|+...+..-.+ ...++.-...++-++.+-+
T Consensus 310 c~~Al~iD~----syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd 374 (486)
T KOG0550|consen 310 CNEALKIDS----SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKD 374 (486)
T ss_pred hhhhhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhh
Confidence 998876541 2233333333 444578999999888776543322 3455555555665555443
No 262
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.60 E-value=16 Score=33.33 Aligned_cols=229 Identities=11% Similarity=0.030 Sum_probs=132.0
Q ss_pred hhcCHHHHHHHHHHHhhcC-CCCCCH------HhHHHHHHHHHccCChhHHHHHHHHHHHc----C----CCCC---ccH
Q 013010 108 VTLGLNKATEFYHWVERFF-DFFHNE------MTCKEMGIVFARGNNVKGLWDFLKDMSRR----G----NGEL---VTT 169 (451)
Q Consensus 108 ~~~~~~~A~~~f~~~~~~~-~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~----~~~~---~~~ 169 (451)
..|+.+.|.-++.++.... ...|+. ..|+.-...+.+..+++.|...+++..+. + ..+. .-.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4577889999999887653 334442 24444444444333888888887655443 1 1111 123
Q ss_pred HhHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 013010 170 SSVTCLIKVLGEEGLVN---EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246 (451)
Q Consensus 170 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~ 246 (451)
.++..++.+|...+..+ +|..+++.+.... .-...++-.-+..+.+.++.+++.+.+.+|...-. -....+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~---~~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD---HSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc---cccchHHH
Confidence 56777888888877655 5666777775532 22355665667777778999999999999998742 23455665
Q ss_pred HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHh-hHHHH-HH-HHH--hcC------CHHHHHHHHHHHHh
Q 013010 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV-AYNCL-ID-GCC--KTY------RIERALELFDDMNK 315 (451)
Q Consensus 247 li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l-i~-~~~--~~g------~~~~a~~~~~~m~~ 315 (451)
++..+-...+. ....|...++.+....+.|... ....+ +. .+. +.+ +++...++++...+
T Consensus 161 ~l~~i~~l~~~---------~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~ 231 (278)
T PF08631_consen 161 ILHHIKQLAEK---------SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEH 231 (278)
T ss_pred HHHHHHHHHhh---------CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHH
Confidence 56555332211 3346667776666555555543 22111 11 111 111 14455555654433
Q ss_pred -CCCCCCHHHHHHHHH-------HHHhcCCHHHHHHHHHHHH
Q 013010 316 -KGCIPNRVTYNSFIR-------YYSVVNEIDKAIEMMRKMQ 349 (451)
Q Consensus 316 -~g~~p~~~t~~~li~-------~~~~~g~~~~A~~~~~~m~ 349 (451)
.+.+.+..+-.++.. .+.+.++++.|.+.|+-..
T Consensus 232 ~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 232 SLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 233445555444333 2456789999999987543
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.47 E-value=8.5 Score=30.28 Aligned_cols=90 Identities=11% Similarity=-0.033 Sum_probs=53.4
Q ss_pred hhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc-cHHhHHHHHHHHHhcCCHH
Q 013010 108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVN 186 (451)
Q Consensus 108 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 186 (451)
..++++.|++.|...... .+-....||.-..++.-.|+.++|++=+++..+...+... -...|..--..|-..|+.+
T Consensus 55 E~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred hccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 356677777777776632 3445667777777777777777777777666654322111 1122323333455567777
Q ss_pred HHHHHHHHHhhCC
Q 013010 187 EALATFYRMKQFR 199 (451)
Q Consensus 187 ~A~~~~~~m~~~g 199 (451)
.|..=|+...+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 7777776666555
No 264
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.40 E-value=21 Score=34.43 Aligned_cols=260 Identities=11% Similarity=0.105 Sum_probs=148.8
Q ss_pred HHccCChhHHHHHHHHHHHcCCCC--Ccc-HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHh
Q 013010 142 FARGNNVKGLWDFLKDMSRRGNGE--LVT-TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA--LCR 216 (451)
Q Consensus 142 ~~~~g~~~~a~~~~~~m~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~ 216 (451)
+-+.+++.+|.++|.++.+..-.. ... ...-+.+|++|.. .+.+.....+.++.+. .| ...|-.+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 457889999999999987764221 111 2233556677764 5666666666666653 23 2333333333 457
Q ss_pred cCChHHHHHHHHHhhhC--CCCCCC-----------CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC-
Q 013010 217 VGNFNKARFLLEQMELP--GFRCPP-----------DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG- 282 (451)
Q Consensus 217 ~g~~~~a~~~~~~m~~~--g~~~~p-----------~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~- 282 (451)
.+++++|.+.+...... +.. +| |-.-=+..++++...| ++.++..+++++...=
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~-~~~Ld~ni~~l~~df~l~~i~a~sLIe~g-----------~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTE-SPWLDTNIQQLFSDFFLDEIEAHSLIETG-----------RFSEGRAILNRIIERLL 159 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccc-cchhhhhHHHHhhHHHHHHHHHHHHHhcC-----------CcchHHHHHHHHHHHHh
Confidence 88899999988877655 322 12 2222356778888899 8888888888776543
Q ss_pred ---CCCCHhhHHHHHHHHHhcCCH---------------HHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhc--C
Q 013010 283 ---FVPDVVAYNCLIDGCCKTYRI---------------ERALELFDDMNKK------GCIPNRVTYNSFIRYYSVV--N 336 (451)
Q Consensus 283 ---~~~~~~~~~~li~~~~~~g~~---------------~~a~~~~~~m~~~------g~~p~~~t~~~li~~~~~~--g 336 (451)
...+..+||-++-.+.++--. +-+.-..++|... .+.|-...+..++....-. .
T Consensus 160 krE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e 239 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE 239 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh
Confidence 447899999877666554211 1122222233221 3445555555555554432 2
Q ss_pred CHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCCch
Q 013010 337 EIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPR----EYTYKLVCDALNAAEEPSL 411 (451)
Q Consensus 337 ~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~ 411 (451)
+..--.+++........ .|+-. ....|+..+.. +.+++..+.+.+....+.+= ..++..++....+.++...
T Consensus 240 ~l~~~mq~l~~We~~yv-~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~ 316 (549)
T PF07079_consen 240 RLPPLMQILENWENFYV-HPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE 316 (549)
T ss_pred hccHHHHHHHHHHhhcc-CCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 22223344444444443 44432 33344444444 55666666555554332221 3478888888888888888
Q ss_pred HHHHHHHHH
Q 013010 412 LDDGLRKRI 420 (451)
Q Consensus 412 a~~~~~~~~ 420 (451)
|.+.+.-..
T Consensus 317 a~q~l~lL~ 325 (549)
T PF07079_consen 317 AKQYLALLK 325 (549)
T ss_pred HHHHHHHHH
Confidence 877776554
No 265
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=6.5 Score=37.12 Aligned_cols=100 Identities=16% Similarity=0.085 Sum_probs=76.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-----CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhh
Q 013010 295 DGCCKTYRIERALELFDDMNKK-----GC---------IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360 (451)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~m~~~-----g~---------~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~ 360 (451)
+.|.+.|++..|..-|+..... +. ..-..+++.|.-+|.+.+++.+|++..+.....+ ++|...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KA 293 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKA 293 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhH
Confidence 4567778888887777664431 11 1224557778889999999999999999999887 678877
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013010 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398 (451)
Q Consensus 361 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 398 (451)
.-.=-.+|...|+++.|...|+.+.+ +.|+...-+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~ 329 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARA 329 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHH
Confidence 77777889999999999999999987 5576554443
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.90 E-value=1.7 Score=26.79 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 327 SFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
.+-..|...|++++|.++|++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.76 E-value=1.6 Score=26.82 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=15.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcC
Q 013010 135 CKEMGIVFARGNNVKGLWDFLKDMSRRG 162 (451)
Q Consensus 135 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 162 (451)
+..+..+|.+.|++++|.+++++..+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4445555555555555555555555553
No 268
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.64 E-value=32 Score=35.44 Aligned_cols=284 Identities=10% Similarity=0.041 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCC---hhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNN---VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187 (451)
Q Consensus 111 ~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 187 (451)
.+..|+.+-.++....+. +...|.....-+.+..+ -+-+..+-+++... . ....+|..+.+-...+|+.+.
T Consensus 452 ~Y~vaIQva~~l~~p~~~--~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~---~~~iSy~~iA~~Ay~~GR~~L 525 (829)
T KOG2280|consen 452 LYSVAIQVAKLLNLPESQ--GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L---TPGISYAAIARRAYQEGRFEL 525 (829)
T ss_pred hhHHHHHHHHHhCCcccc--ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C---CCceeHHHHHHHHHhcCcHHH
Confidence 356777777776532111 14555556665655432 22233333333222 1 233468888888888999999
Q ss_pred HHHHHHHHhhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC---------CCCCHHHHHHHHHHHHhc
Q 013010 188 ALATFYRMKQFRC----RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR---------CPPDVYTYTILISSYCKY 254 (451)
Q Consensus 188 A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---------~~p~~~~~~~li~~~~~~ 254 (451)
|..+++.=...+- -.+..-+...+.-+...|+.+....++-.+...-.. .|-....|.- +++.
T Consensus 526 A~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~----~~r~ 601 (829)
T KOG2280|consen 526 ARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQ----FMRH 601 (829)
T ss_pred HHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHH----HHHh
Confidence 9988764333221 123344566677778888888777777666543210 0111122222 2221
Q ss_pred CCchhhhHHHH-HHHHHHHHHH--HHHH----hcCCCCCHhhHHHHHHHHHhcCCHH----------HHHHHHHHHH-hC
Q 013010 255 GMQTGCRKAIR-RRIWEANHLF--RLML----FKGFVPDVVAYNCLIDGCCKTYRIE----------RALELFDDMN-KK 316 (451)
Q Consensus 255 g~~~~~~~~~~-~~~~~a~~~~--~~m~----~~~~~~~~~~~~~li~~~~~~g~~~----------~a~~~~~~m~-~~ 316 (451)
.+........+ .+-.++...| +... ..|..|+ ....-++|.+..... +-..+.+.+. +.
T Consensus 602 ~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~ 678 (829)
T KOG2280|consen 602 QDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF 678 (829)
T ss_pred hchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 11110000000 0111111111 1100 1122232 233444455443311 1122333333 23
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 013010 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396 (451)
Q Consensus 317 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 396 (451)
|......+.+--+..+...|+-.+|.++-.+.+ .||...|-.=+.+++..+++++-+++-+.+.. +.-|
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy 747 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGY 747 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCc
Confidence 555666677778888889999999998876653 79999999999999999999998888766542 3457
Q ss_pred HHHHHHHHhcCCCchHHHHHHH
Q 013010 397 KLVCDALNAAEEPSLLDDGLRK 418 (451)
Q Consensus 397 ~~li~~~~~~g~~~~a~~~~~~ 418 (451)
..+..+|.+.|+.++|.+.+-+
T Consensus 748 ~PFVe~c~~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 748 LPFVEACLKQGNKDEAKKYIPR 769 (829)
T ss_pred hhHHHHHHhcccHHHHhhhhhc
Confidence 7789999999999988777653
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.35 E-value=1.1 Score=26.18 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 013010 172 VTCLIKVLGEEGLVNEALATFYR 194 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~ 194 (451)
|+.|-..|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445555555555555555554
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.29 E-value=1.2 Score=26.03 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 360 SYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
+|..|-..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566677777777777777777643
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.18 E-value=15 Score=30.13 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=41.2
Q ss_pred hhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 288 VAYNCLIDGC---CKTYRIERALELFDDMNKKGCIPNR---VTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 288 ~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
.+.+.||..+ .+.++.+++..++..+.-. .|.. .++... -+...|++.+|+.+|+++....
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC
Confidence 3444444433 4678888999998888765 4543 344433 3568899999999999987654
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.13 E-value=48 Score=36.15 Aligned_cols=109 Identities=18% Similarity=0.104 Sum_probs=62.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013010 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY----SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368 (451)
Q Consensus 293 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 368 (451)
.++.--+.|-+.+|..++ .|+...+..+..+| ...+.+++|.-+|+..-+. .-.+.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~ 975 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL----------EKALKAY 975 (1265)
T ss_pred HHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH----------HHHHHHH
Confidence 333333444455554444 46666655555444 4557777777777654221 2346778
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 369 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
..+|++.+|+.+..+|....-. -..+-..|+.-+...|+.-+|.+++.+..
T Consensus 976 ~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 8888888888887766421100 01122456666777777766766666554
No 273
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.12 E-value=5.4 Score=29.41 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 013010 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~ 249 (451)
+.-++.+-++.+...++.|+.....+.+.+|-+.+++..|.++|+-.+... ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~---~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC---GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc---cCchhhHHHHHH
Confidence 455677777777777888888888888888888888888888888777442 134445655554
No 274
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.52 E-value=35 Score=33.59 Aligned_cols=173 Identities=12% Similarity=-0.008 Sum_probs=116.4
Q ss_pred CCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 013010 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318 (451)
Q Consensus 239 p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 318 (451)
.|.....+++..+...- ...-.+.+-.+|..-| -+...|-.++.+|... .-+.-..+++.+.+..+
T Consensus 64 l~d~~l~~~~~~f~~n~-----------k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df 129 (711)
T COG1747 64 LDDSCLVTLLTIFGDNH-----------KNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF 129 (711)
T ss_pred ccchHHHHHHHHhccch-----------HHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc
Confidence 45556677788887776 7777778888888765 3667888899999888 55777888888887743
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCH
Q 013010 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV----PTSSSYTPIIHALCEAGRVLEARDFLAELVD-GGSVPRE 393 (451)
Q Consensus 319 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~ 393 (451)
|...+..-+..+...++.+++...|.+....-+.. .-...|.-|+... ..+.+....+...... .|..--.
T Consensus 130 --nDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~ 205 (711)
T COG1747 130 --NDVVIGRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGS 205 (711)
T ss_pred --hhHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHH
Confidence 44455555555555588888888888877654310 0112455444321 3456777777766653 3555566
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHHHH
Q 013010 394 YTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFR 429 (451)
Q Consensus 394 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 429 (451)
..+.-+-.-|....+++++.+++....+..-...|.
T Consensus 206 Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 206 VLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhH
Confidence 777777788888888888888888666544443333
No 275
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.37 E-value=26 Score=31.90 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=20.8
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 013010 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230 (451)
Q Consensus 180 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 230 (451)
...|+..+|...|....+.. +-+...--.+..+|...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 33444444444444444322 112233333444444444444444444443
No 276
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.86 E-value=4.6 Score=30.13 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~ 250 (451)
.-+..+-++.+...++.|+.....+.+.+|-|.+++..|.++|+-.+..-. +....|..++.-
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~---~~~~~Y~~~lqE 88 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG---NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT---T-TTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc---ChHHHHHHHHHH
Confidence 336677777777788888999999999999999999999999888876532 233366666553
No 277
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.79 E-value=7.7 Score=28.65 Aligned_cols=41 Identities=12% Similarity=0.257 Sum_probs=17.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349 (451)
Q Consensus 309 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 349 (451)
-++.+....+.|++....+-+++|.+.+++..|.++|+-.+
T Consensus 29 ~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 29 GLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444433
No 278
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.51 E-value=28 Score=31.63 Aligned_cols=149 Identities=15% Similarity=0.038 Sum_probs=99.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 013010 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV 217 (451)
Q Consensus 138 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 217 (451)
-.......|++.+|..+|......... +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~---~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE---NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc---cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 334556789999999999998887533 34456788899999999999999999987643222222223345556666
Q ss_pred CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC-CCCHhhHHHHHHH
Q 013010 218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF-VPDVVAYNCLIDG 296 (451)
Q Consensus 218 g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~ 296 (451)
....+...+-.+.... |-|...-..+...+...| +.++|.+.+-.+..+.. --|...-..++..
T Consensus 217 a~~~~~~~l~~~~aad----Pdd~~aa~~lA~~~~~~g-----------~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~ 281 (304)
T COG3118 217 AATPEIQDLQRRLAAD----PDDVEAALALADQLHLVG-----------RNEAALEHLLALLRRDRGFEDGEARKTLLEL 281 (304)
T ss_pred hcCCCHHHHHHHHHhC----CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 6666555555555543 137777777888888888 78888877766654321 2234455566666
Q ss_pred HHhcCCHH
Q 013010 297 CCKTYRIE 304 (451)
Q Consensus 297 ~~~~g~~~ 304 (451)
+.--|..+
T Consensus 282 f~~~g~~D 289 (304)
T COG3118 282 FEAFGPAD 289 (304)
T ss_pred HHhcCCCC
Confidence 66555433
No 279
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.19 E-value=32 Score=31.92 Aligned_cols=155 Identities=12% Similarity=0.040 Sum_probs=95.2
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHH---
Q 013010 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN--- 291 (451)
Q Consensus 215 ~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--- 291 (451)
...|++.+|-..++++.+. .|.|..++.-.=++|.-.| +...-...+++.... -.+|...|.
T Consensus 114 ~~~g~~h~a~~~wdklL~d---~PtDlla~kfsh~a~fy~G-----------~~~~~k~ai~kIip~-wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD---YPTDLLAVKFSHDAHFYNG-----------NQIGKKNAIEKIIPK-WNADLPCYSYVH 178 (491)
T ss_pred hccccccHHHHHHHHHHHh---CchhhhhhhhhhhHHHhcc-----------chhhhhhHHHHhccc-cCCCCcHHHHHH
Confidence 3456677777777777765 3568788887788888888 566666666665532 234443332
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCChhhHHHHHHHH
Q 013010 292 -CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG--VPTSSSYTPIIHAL 368 (451)
Q Consensus 292 -~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~p~~~~~~~li~~~ 368 (451)
...-++...|-+++|++.-++..+.+ +.|.-.-.++...+-..|+..++.++..+-...-.. ..-.+-|-...-.+
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH 257 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence 23334457788888888877766653 235555566666677788888888887664432210 11112232222334
Q ss_pred HHcCCHHHHHHHHHHHH
Q 013010 369 CEAGRVLEARDFLAELV 385 (451)
Q Consensus 369 ~~~g~~~~A~~l~~~m~ 385 (451)
...+.++.|+++|+.=+
T Consensus 258 iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 258 IEGAEYEKALEIYDREI 274 (491)
T ss_pred hcccchhHHHHHHHHHH
Confidence 45578888999887544
No 280
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=84.85 E-value=28 Score=30.97 Aligned_cols=188 Identities=13% Similarity=0.050 Sum_probs=107.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc
Q 013010 177 KVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (451)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~ 254 (451)
..-.+.|++++|.+.|+.+..+- -+-...+--.++-++.+.+++++|....++....--. .|| .-|..-|.+++..
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~-~~n-~dY~~YlkgLs~~ 119 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT-HPN-ADYAYYLKGLSYF 119 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHh
Confidence 33456788889988888887642 1223455566677788889999999888887765422 233 3455555555543
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334 (451)
Q Consensus 255 g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 334 (451)
-..+...+ +...+...+..+.+ +|.-|=.+.-..+|...+..+... =..-=-.+.+.|.+
T Consensus 120 ~~i~~~~r----Dq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~k 179 (254)
T COG4105 120 FQIDDVTR----DQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLK 179 (254)
T ss_pred ccCCcccc----CHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 32222211 33344444433332 222222222223333333322211 00001235567889
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 335 VNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 335 ~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
.|.+-.|..-+++|.+..-. .-....+-.+..+|...|-.++|.+.-.-+..
T Consensus 180 r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 180 RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99999999999999886421 12233566677888888988888877655543
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.74 E-value=22 Score=29.65 Aligned_cols=136 Identities=11% Similarity=0.050 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC
Q 013010 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282 (451)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~ 282 (451)
+...|...++ +.+.++.++|+.-|.++.+.|..--|.. .---+.......| +...|...|++.-...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvL-A~mr~at~~a~kg-----------dta~AV~aFdeia~dt 124 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVL-ARMRAATLLAQKG-----------DTAAAVAAFDEIAADT 124 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHH-HHHHHHHHHhhcc-----------cHHHHHHHHHHHhccC
Confidence 3344444443 3455666677777777766665411111 1111122233334 5566666666665443
Q ss_pred CCCCHh-hHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010 283 FVPDVV-AYNCLID--GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351 (451)
Q Consensus 283 ~~~~~~-~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (451)
-.|-.. -..-|=. .+...|.+++.....+-+-..|-+.-...-..|--+-.+.|++.+|...|..+...
T Consensus 125 ~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 125 SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 333221 1111111 23455666666666665554443333344445555556667777777777666553
No 282
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.64 E-value=22 Score=29.55 Aligned_cols=130 Identities=16% Similarity=0.131 Sum_probs=59.6
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q 013010 190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269 (451)
Q Consensus 190 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~ 269 (451)
+....+.+.|++|+...|..+++.+.+.|++.....+ ...++- +|.......+-.+...... -.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi--~DSk~lA~~LLs~~~~~~~---------~~Q 79 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVI--PDSKPLACQLLSLGNQYPP---------AYQ 79 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----Hhhccc--CCcHHHHHHHHHhHccChH---------HHH
Confidence 3445555566667777777777777777665443333 333332 3333333333222221100 122
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346 (451)
Q Consensus 270 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (451)
-|++.+.++. ..+..++..+...|++-+|.+..+..... +......++.+-.+.++...=..+++
T Consensus 80 l~lDMLkRL~--------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 80 LGLDMLKRLG--------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred HHHHHHHHhh--------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 3333333332 12344556666666666666666554222 11112334455555555444333333
No 283
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.70 E-value=2.8 Score=25.02 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=11.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010 171 SVTCLIKVLGEEGLVNEALATFYRM 195 (451)
Q Consensus 171 ~~~~li~~~~~~g~~~~A~~~~~~m 195 (451)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444455555555555544444
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.19 E-value=59 Score=33.40 Aligned_cols=287 Identities=13% Similarity=0.077 Sum_probs=133.7
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 188 (451)
-|.+++|..+|-.+.++ . ..+..+.+.|++-.+.++++.=-. +.....-...|+.+-..+.....+++|
T Consensus 747 ~g~feeaek~yld~drr-D---------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A 815 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR-D---------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEA 815 (1189)
T ss_pred hcchhHhhhhhhccchh-h---------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888887777543 1 245556666777766666543110 111111234566666666666666666
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC------CCHHHHHHHHHHHHhcCCchhhhH
Q 013010 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP------PDVYTYTILISSYCKYGMQTGCRK 262 (451)
Q Consensus 189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~------p~~~~~~~li~~~~~~g~~~~~~~ 262 (451)
.+.|..-... ...+.++.+..++++.+.+...+.+..--.| ..+-...-.+.+|.+.+.+..|..
T Consensus 816 ~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~ 886 (1189)
T KOG2041|consen 816 AKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVH 886 (1189)
T ss_pred HHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHH
Confidence 6666543220 1123334433334333333332221110000 011122223333333333322221
Q ss_pred HHH--HHHHHHHHHHHHHHhcCC-----------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHH--
Q 013010 263 AIR--RRIWEANHLFRLMLFKGF-----------VPDVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIPNRV-- 323 (451)
Q Consensus 263 ~~~--~~~~~a~~~~~~m~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~-- 323 (451)
.-. +++.+|.++-+...-..+ -.+..+.. -|..+.+.|+.-+|-+++.+|.+. +.+|-..
T Consensus 887 tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~e-aIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kk 965 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHME-AIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKK 965 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHH-HHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHH
Confidence 100 156666655543321000 00111111 234456677777777777777543 3333221
Q ss_pred --HHHH-HHHHHH----------hcCCHHHHHHHHHHHHhcC--------CCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 013010 324 --TYNS-FIRYYS----------VVNEIDKAIEMMRKMQNLN--------HGVPTSSSYTPIIHALCEAGRVLEARDFLA 382 (451)
Q Consensus 324 --t~~~-li~~~~----------~~g~~~~A~~~~~~m~~~~--------~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 382 (451)
...+ |+.-+. +.|..++|..+++.-.-.. ..-....+|-+|..--...|.++.|.+.--
T Consensus 966 lYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal 1045 (1189)
T KOG2041|consen 966 LYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTAL 1045 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 1111 122221 2355566665444322110 001223444455555566789999988766
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCCCchHHHHH
Q 013010 383 ELVDG-GSVPREYTYKLVCDALNAAEEPSLLDDGL 416 (451)
Q Consensus 383 ~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 416 (451)
.+.+. .+-|....|+.|.-+-|....+..-.+.+
T Consensus 1046 ~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1046 ILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred hhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 66543 57788889998877777666555443333
No 285
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.01 E-value=13 Score=31.80 Aligned_cols=78 Identities=8% Similarity=0.020 Sum_probs=52.5
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHhcCC
Q 013010 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF---RCRPDVYAYNVVINALCRVGN 219 (451)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~ 219 (451)
.+.|+ +.|.+.|-.+...+.- -++.....|..-| ...+.+++..++....+. +-.+|+..+..|.+.+.+.|+
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l--~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPEL--ETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCC--CCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 44455 4577777777666532 2444444444444 467888888888777652 336788889999999999988
Q ss_pred hHHHH
Q 013010 220 FNKAR 224 (451)
Q Consensus 220 ~~~a~ 224 (451)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 88774
No 286
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.85 E-value=3.6 Score=24.48 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 359 SSYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456667777777777777777776655
No 287
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.63 E-value=20 Score=26.87 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365 (451)
Q Consensus 305 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 365 (451)
+..+-++.+....+.|++....+-+.+|.+.+++..|.++|+-.+.+.. +....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHH
Confidence 4444555555556666666666666666666666666666666655442 2222555444
No 288
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=81.52 E-value=42 Score=30.54 Aligned_cols=139 Identities=10% Similarity=0.081 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHh-cCCCCCHhhHHHHHHHHHh-cC-CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010 267 RIWEANHLFRLMLF-KGFVPDVVAYNCLIDGCCK-TY-RIERALELFDDMNK-KGCIPNRVTYNSFIRYYSVVNEIDKAI 342 (451)
Q Consensus 267 ~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~A~ 342 (451)
.+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .|..++..+...+|..+++.+++++-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 55677777773322 3355577777777777765 22 33344455555443 356778888889999999999999999
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH-----HHhCCCCCCHHHHHHHHHHHHh
Q 013010 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE-----LVDGGSVPREYTYKLVCDALNA 405 (451)
Q Consensus 343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~-----m~~~g~~p~~~t~~~li~~~~~ 405 (451)
++|+.-.......-|..-|..+|+.....|+..-..++.++ ++..|+..+...-..|-+.+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 99988776533367888899999999999998777666543 2345666666655555544443
No 289
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.28 E-value=67 Score=32.73 Aligned_cols=187 Identities=14% Similarity=0.075 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHH-HHccCChhHHHHHHHHHHH-------cCCCCCccHHhHHHHHHHHHhc
Q 013010 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIV-FARGNNVKGLWDFLKDMSR-------RGNGELVTTSSVTCLIKVLGEE 182 (451)
Q Consensus 111 ~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~~~li~~~~~~ 182 (451)
+...|.++|+...+.....+-...=.....+ ++...+.+.|..++....+ .+.. ...+-+-.+|.+.
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~-----~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP-----PAQYGLGRLYLQG 301 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC-----ccccHHHHHHhcC
Confidence 3567888888877652111111111111222 4466799999999998877 4422 2355666667664
Q ss_pred C-----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh-cC
Q 013010 183 G-----LVNEALATFYRMKQFRCRPDVYAYNVVINALCR-VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-YG 255 (451)
Q Consensus 183 g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~-~g 255 (451)
. +.+.|..+|....+.|. |+....-..+..... ..+...|.++|......|. +. ..|. +..+|.. .|
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~-A~~~-la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---IL-AIYR-LALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hH-HHHH-HHHHHHhCCC
Confidence 3 67889999999988774 455544443333332 2467899999999999984 22 2222 2222222 22
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 013010 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC 318 (451)
Q Consensus 256 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 318 (451)
. ..+...|..++...-+.|........ ..+..+.. ++.+.+.-.+..+.+.|.
T Consensus 376 v--------~r~~~~A~~~~k~aA~~g~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 376 V--------ERNLELAFAYYKKAAEKGNPSAAYLL-GAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred c--------CCCHHHHHHHHHHHHHccChhhHHHH-HHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 1 12778899999988888722222222 22333333 777777777777766654
No 290
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=80.63 E-value=51 Score=30.99 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=30.9
Q ss_pred HHHHcCCHHHHHHHHHHHH----hCCCCCC-HHHHHHHHHHHHhcCCCchHHHHHHHHH--HhchHHHHHHh
Q 013010 367 ALCEAGRVLEARDFLAELV----DGGSVPR-EYTYKLVCDALNAAEEPSLLDDGLRKRI--RDGIEYRFRQV 431 (451)
Q Consensus 367 ~~~~~g~~~~A~~l~~~m~----~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~--~~g~~~~~~~~ 431 (451)
++...|.+..|.+.-++.. ..|-++. ......+.+.|...|+.+.+...+++.+ -.++-.++.++
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv 286 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQV 286 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4445555555555544432 2332221 2233445555666666666655555554 24444444443
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.28 E-value=4.6 Score=22.85 Aligned_cols=26 Identities=23% Similarity=0.089 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010 172 VTCLIKVLGEEGLVNEALATFYRMKQ 197 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~m~~ 197 (451)
|..+..+|...|++++|+..|++..+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444444444444444443
No 292
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.12 E-value=14 Score=32.02 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCChhhHHHHHHH
Q 013010 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHA 367 (451)
Q Consensus 289 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~ 367 (451)
|.+..++.+.+.+.+.+|+...++-.+.+ +.|..+-..+++.||-.|++++|..-++-.-+.... .+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556777778888888888877766652 225566677788888888888887766654443210 3445566666543
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.12 E-value=32 Score=28.29 Aligned_cols=89 Identities=10% Similarity=-0.022 Sum_probs=56.0
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 013010 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF 220 (451)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 220 (451)
.-.+.++.+++..++..+.-.... .+...++...+ +...|++.+|..+|+++.+.+ |.......|+..|....+-
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 345678999999999988776432 23334444443 678899999999999987753 4444555555555544433
Q ss_pred HHHHHHHHHhhhCC
Q 013010 221 NKARFLLEQMELPG 234 (451)
Q Consensus 221 ~~a~~~~~~m~~~g 234 (451)
..=...-+++.+.+
T Consensus 94 ~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 94 PSWRRYADEVLESG 107 (160)
T ss_pred hHHHHHHHHHHhcC
Confidence 33333345566555
No 294
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.71 E-value=67 Score=31.76 Aligned_cols=179 Identities=16% Similarity=0.127 Sum_probs=102.9
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (451)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l 247 (451)
+....-+++..++.+-...-+..+-.+|...| -+-..|-.++..|... .-+.-..+++++.+..+. |++.-..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn---Dvv~~ReL 138 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN---DVVIGREL 138 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch---hHHHHHHH
Confidence 44456677777777777777777777777754 4666777777777777 456677777777776653 55555555
Q ss_pred HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC
Q 013010 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-----DVVAYNCLIDGCCKTYRIERALELFDDMNKK-GCIPN 321 (451)
Q Consensus 248 i~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 321 (451)
..-|-+ + +.+.+..+|.....+=++. -...|..+... -..+.+....+....... |..--
T Consensus 139 a~~yEk-i-----------k~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~ 204 (711)
T COG1747 139 ADKYEK-I-----------KKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRG 204 (711)
T ss_pred HHHHHH-h-----------chhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchH
Confidence 555555 4 4445555555544331110 11223333221 123455666666555533 33334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013010 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368 (451)
Q Consensus 322 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 368 (451)
...+.-+-..|....++++|++++..+.+.. .-|...-..++..+
T Consensus 205 ~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d--~k~~~ar~~~i~~l 249 (711)
T COG1747 205 SVLMQDVYKKYSENENWTEAIRILKHILEHD--EKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHhhhc--chhhhHHHHHHHHH
Confidence 5555666666777777777777777666655 33444444444433
No 295
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.19 E-value=19 Score=31.26 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHH
Q 013010 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD--GGSVPREYTYKLVCD 401 (451)
Q Consensus 324 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~li~ 401 (451)
|.+.-++.+.+.+.+++|+....+-.+.. +.|...-..+++.||-.|++++|..-++-.-. ....+-..+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455677778899999999998877765 55666777889999999999999754443321 123334455555544
Q ss_pred H
Q 013010 402 A 402 (451)
Q Consensus 402 ~ 402 (451)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 3
No 296
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.78 E-value=33 Score=27.70 Aligned_cols=95 Identities=16% Similarity=0.060 Sum_probs=65.4
Q ss_pred CCCCCHH--hHHHHHHHHHccCChhHHHHHHHHHHHcC---CCCCccHHhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCC
Q 013010 127 DFFHNEM--TCKEMGIVFARGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLIKVLGEEGL-VNEALATFYRMKQFRC 200 (451)
Q Consensus 127 ~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~ 200 (451)
+..++.. ..|.++.-.+..+++.....+++.+..-. .....+..+|.+++++.+...- --.+..+|.-|++.+.
T Consensus 32 ~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~ 111 (145)
T PF13762_consen 32 NASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDI 111 (145)
T ss_pred ccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCC
Confidence 4444443 46777777777788888888887774321 1112355678888888876665 4457778888888788
Q ss_pred CCCHHHHHHHHHHHHhcCChH
Q 013010 201 RPDVYAYNVVINALCRVGNFN 221 (451)
Q Consensus 201 ~p~~~~~~~li~~~~~~g~~~ 221 (451)
+++..-|..+|.++.+....+
T Consensus 112 ~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 112 EFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred CCCHHHHHHHHHHHHcCCCCc
Confidence 888888888888877664433
No 297
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.68 E-value=6.1 Score=27.93 Aligned_cols=48 Identities=17% Similarity=0.037 Sum_probs=29.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHH
Q 013010 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191 (451)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 191 (451)
..+..++|+..+....++-..+..--.++..|+.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777766665444333345566677777777777666554
No 298
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=78.45 E-value=9.1 Score=24.16 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=28.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013010 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402 (451)
Q Consensus 367 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 402 (451)
...+.|-++++..++++|.+.|+..+...|..+++-
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 345677788888889999888988888888777653
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.92 E-value=27 Score=29.91 Aligned_cols=22 Identities=5% Similarity=-0.088 Sum_probs=9.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHH
Q 013010 356 PTSSSYTPIIHALCEAGRVLEA 377 (451)
Q Consensus 356 p~~~~~~~li~~~~~~g~~~~A 377 (451)
+|+..+..|...+.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444444444443
No 300
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=77.80 E-value=63 Score=30.43 Aligned_cols=117 Identities=12% Similarity=0.020 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhc-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHHH-----HHHH
Q 013010 267 RIWEANHLFRLMLFK-----GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK----KGCIPNRVTYNSF-----IRYY 332 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~t~~~l-----i~~~ 332 (451)
.++.+++.|+....- .-.....+|..|-..|.+..++++|.-......+ -|+.--..-|..+ .-++
T Consensus 137 ~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence 555555555544321 0112234566666677777777766544433221 2222122233322 2345
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCChh----hHHHHHHHHHHcCCHHHHHHHHHH
Q 013010 333 SVVNEIDKAIEMMRKMQNLNHGVPTSS----SYTPIIHALCEAGRVLEARDFLAE 383 (451)
Q Consensus 333 ~~~g~~~~A~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~l~~~ 383 (451)
...|.+..|.+..++..+.....-|.. ....+.+.|...|+.+.|..-|+.
T Consensus 217 R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 217 RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 556666666666666444322112222 334455556666777766655543
No 301
>PHA02875 ankyrin repeat protein; Provisional
Probab=76.62 E-value=76 Score=30.75 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=23.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHH
Q 013010 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVY--AYNVVINALCRVGNFNKARFLLE 228 (451)
Q Consensus 175 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~ 228 (451)
.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+.+..+++
T Consensus 38 pL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 38 PIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 344445556654 333344445444322 11223444556677666555554
No 302
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=76.61 E-value=3.5 Score=23.76 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=9.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHH
Q 013010 357 TSSSYTPIIHALCEAGRVLEA 377 (451)
Q Consensus 357 ~~~~~~~li~~~~~~g~~~~A 377 (451)
+...|+.+-..|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
No 303
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.29 E-value=1 Score=36.37 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=26.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHH
Q 013010 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFY 193 (451)
Q Consensus 138 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 193 (451)
++..+.+.+..+.+..+++.+...+.. .+....+.++..|++.+..++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~--~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKE--NNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC---SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc--cCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444555555555555555544322 234455556666665555455554444
No 304
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.20 E-value=45 Score=27.89 Aligned_cols=133 Identities=16% Similarity=0.140 Sum_probs=78.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHH-
Q 013010 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY-AYNVVI- 211 (451)
Q Consensus 134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li- 211 (451)
.|..-+. +++.+..++|+.-|..+.+.|.+.-|.. .--.........|+...|...|++.-...-.|-.. -..-|=
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvL-A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVL-ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHH-HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 3443333 3556777888888888888776542221 11122233456788888888888876643333222 111111
Q ss_pred -HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010 212 -NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281 (451)
Q Consensus 212 -~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~ 281 (451)
-.+...|.++......+-+...+. +.-...-..|--+-.+.| ++..|.+.|..+...
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n--~mR~sArEALglAa~kag-----------d~a~A~~~F~qia~D 196 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGN--PMRHSAREALGLAAYKAG-----------DFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCC--hhHHHHHHHHhHHHHhcc-----------chHHHHHHHHHHHcc
Confidence 234567778887777777766553 133334455666666777 777888888777654
No 305
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.83 E-value=8.1 Score=27.33 Aligned_cols=47 Identities=23% Similarity=0.176 Sum_probs=27.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHcCCHHHHHHH
Q 013010 334 VVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDF 380 (451)
Q Consensus 334 ~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l 380 (451)
..++-++|+..|....+.-...|+. .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666544322222 2455666666777766666654
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.36 E-value=42 Score=27.19 Aligned_cols=89 Identities=12% Similarity=0.196 Sum_probs=51.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 013010 298 CKTYRIERALELFDDMNKKGCIP---NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374 (451)
Q Consensus 298 ~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 374 (451)
...++.+++..+++.|.-. .| ...+|...+ +...|++++|..+|++..+.+. ...|..-+.++|-.-.-
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~----~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG----APPYGKALLALCLNAKG 92 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC----CchHHHHHHHHHHHhcC
Confidence 3578888888888888754 34 344454444 4578889999999888887553 22444444444443222
Q ss_pred HHHHH-HHHHHHhCCCCCCHH
Q 013010 375 LEARD-FLAELVDGGSVPREY 394 (451)
Q Consensus 375 ~~A~~-l~~~m~~~g~~p~~~ 394 (451)
|-..+ .-.++.+.|-.|+..
T Consensus 93 Dp~Wr~~A~~~le~~~~~~a~ 113 (153)
T TIGR02561 93 DAEWHVHADEVLARDADADAV 113 (153)
T ss_pred ChHHHHHHHHHHHhCCCHhHH
Confidence 22222 223444555555444
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=75.25 E-value=7.2 Score=22.01 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010 205 YAYNVVINALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 205 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
.+|..+..+|...|++++|+..|++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578888999999999999999999987653
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=74.60 E-value=8.3 Score=21.58 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=9.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 013010 174 CLIKVLGEEGLVNEALATFYRMK 196 (451)
Q Consensus 174 ~li~~~~~~g~~~~A~~~~~~m~ 196 (451)
.+-..+...|++++|.+.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444433
No 309
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=74.22 E-value=4.6 Score=23.27 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=6.1
Q ss_pred HHHHHHHHHhcCCHHH
Q 013010 172 VTCLIKVLGEEGLVNE 187 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~ 187 (451)
|+.+-..|...|++++
T Consensus 16 ~~nla~~~~~~g~~~~ 31 (34)
T PF13431_consen 16 YNNLANLYLNQGDYEE 31 (34)
T ss_pred HHHHHHHHHHCcCHHh
Confidence 3333333333333333
No 310
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=74.08 E-value=52 Score=27.64 Aligned_cols=224 Identities=19% Similarity=0.091 Sum_probs=106.3
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 013010 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF-RCRPDVYAYNVVINALCRVGNFNKAR 224 (451)
Q Consensus 146 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~ 224 (451)
+....+...+.......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNS-DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 44444555554444433110 01334555566666666666666666665542 22334445555555555566666666
Q ss_pred HHHHHhhhCCCCCCCCHHHHHHHHH-HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC--CCCHhhHHHHHHHHHhcC
Q 013010 225 FLLEQMELPGFRCPPDVYTYTILIS-SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF--VPDVVAYNCLIDGCCKTY 301 (451)
Q Consensus 225 ~~~~~m~~~g~~~~p~~~~~~~li~-~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g 301 (451)
+.+......... + ......... .+...| +++.|...+.+...... ......+......+...+
T Consensus 116 ~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (291)
T COG0457 116 ELLEKALALDPD--P-DLAEALLALGALYELG-----------DYEEALELYEKALELDPELNELAEALLALGALLEALG 181 (291)
T ss_pred HHHHHHHcCCCC--c-chHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc
Confidence 666666554321 1 111222222 455555 56666666665533110 012222333333344555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 013010 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381 (451)
Q Consensus 302 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 381 (451)
+.+.+...+..............+..+-..+...+..+.|...+........ .....+..+...+...+..+++...+
T Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP--DNAEALYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred CHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc--ccHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 6666666666555442111244555555555555566666666665555431 11223333333333444555555555
Q ss_pred HHHHh
Q 013010 382 AELVD 386 (451)
Q Consensus 382 ~~m~~ 386 (451)
.....
T Consensus 260 ~~~~~ 264 (291)
T COG0457 260 EKALE 264 (291)
T ss_pred HHHHH
Confidence 55443
No 311
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.92 E-value=1 Score=36.35 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=33.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346 (451)
Q Consensus 293 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (451)
++..+.+.+.++.....++.+...+..-+....+.++..|++.+..++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 455555666666666667766665544556666777777777766666666655
No 312
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.51 E-value=29 Score=33.73 Aligned_cols=47 Identities=11% Similarity=-0.011 Sum_probs=25.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHH
Q 013010 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYA--YNVVINALCRVGNFNKARFLL 227 (451)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~ 227 (451)
...+..|+.+-+.. +.+.|..|+... ..+.+...+..|+.+-+.-++
T Consensus 7 ~~A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll 55 (413)
T PHA02875 7 CDAILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLM 55 (413)
T ss_pred HHHHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 33445677655444 445676665433 234455566778876544443
No 313
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.43 E-value=70 Score=28.41 Aligned_cols=168 Identities=11% Similarity=0.007 Sum_probs=97.3
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 013010 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF 225 (451)
Q Consensus 146 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 225 (451)
+.++.|.-+.+++.+.. .-..-|+--...|..+|..+.|-..+++.-+ .....++++|++
T Consensus 72 KayEqaamLake~~kls----Evvdl~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~Alq 131 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKLS----EVVDLYEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQ 131 (308)
T ss_pred HHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHH
Confidence 44566666666666543 1334577788888999998888777776644 123344556666
Q ss_pred HHHHhhh---CCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc----CCCCC-HhhHHHHHHHH
Q 013010 226 LLEQMEL---PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK----GFVPD-VVAYNCLIDGC 297 (451)
Q Consensus 226 ~~~~m~~---~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~ 297 (451)
+|++... .+-...--...|..+-+.+.+.. ++++|-..+..-... .--++ -..|-+.|-.+
T Consensus 132 lYqralavve~~dr~~ma~el~gk~sr~lVrl~-----------kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 132 LYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE-----------KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH-----------HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 6655321 11100112223444555666666 555555444332211 11112 13355666677
Q ss_pred HhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 013010 298 CKTYRIERALELFDDMNKKG---CIPNRVTYNSFIRYYSVVNEIDKAIEMM 345 (451)
Q Consensus 298 ~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~li~~~~~~g~~~~A~~~~ 345 (451)
....++..|...+++.-+.+ -.-+..+...|+.+| ..|+.+.+..++
T Consensus 201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 77889999999999855442 223677888888887 567777766654
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.38 E-value=51 Score=26.75 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010 182 EGLVNEALATFYRMKQFRCRPD---VYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 182 ~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
.++.+++..+++.|.-. .|+ ..++...+ +...|++++|.++|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 45555566555555442 232 23333332 445566666666666665554
No 315
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.97 E-value=39 Score=25.28 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (451)
..++|..+-+.+...+-. ...+--+-+..+.+.|++++|..+.+.+ +.||...|-+|-.. +.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHH
Confidence 445565555555443311 1112222234456677777777666554 46677666665443 5666666666666
Q ss_pred HHHhcCCCCCChhhH
Q 013010 347 KMQNLNHGVPTSSSY 361 (451)
Q Consensus 347 ~m~~~~~~~p~~~~~ 361 (451)
+|..+| .|....|
T Consensus 93 rla~sg--~p~lq~F 105 (115)
T TIGR02508 93 RLAASG--DPRLQTF 105 (115)
T ss_pred HHHhCC--CHHHHHH
Confidence 666655 3444333
No 316
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.80 E-value=7.7 Score=24.01 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=8.8
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 013010 366 HALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 366 ~~~~~~g~~~~A~~l~~~m~ 385 (451)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 317
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.68 E-value=81 Score=28.77 Aligned_cols=116 Identities=9% Similarity=0.013 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHh-cC-ChHHHHHHHHHhhhC-CCCCCCCHHHHHHHHHHHHhcCCchh
Q 013010 184 LVNEALATFYRMKQ-FRCRPDVYAYNVVINALCR-VG-NFNKARFLLEQMELP-GFRCPPDVYTYTILISSYCKYGMQTG 259 (451)
Q Consensus 184 ~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~~-g~~~~p~~~~~~~li~~~~~~g~~~~ 259 (451)
.+.+|+.+|+..-. ..+--|..+...+++.... .+ ....--++.+-+... +. .++..+...+|..+++.+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~--~l~~~vi~~Il~~L~~~~---- 216 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSK--SLTRNVIISILEILAESR---- 216 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhcccc--CCChhHHHHHHHHHHhcc----
Confidence 44566666663222 2344566666666666654 11 122222222322222 11 256666666677777666
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 013010 260 CRKAIRRRIWEANHLFRLMLFK-GFVPDVVAYNCLIDGCCKTYRIERALELFDD 312 (451)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 312 (451)
++..-.++++.-... +..-|...|..+|......|+..-...+.++
T Consensus 217 -------dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 217 -------DWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred -------cHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 666666666555433 3445666677777777777766555555543
No 318
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.57 E-value=66 Score=29.13 Aligned_cols=88 Identities=13% Similarity=0.002 Sum_probs=59.3
Q ss_pred HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326 (451)
Q Consensus 247 li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 326 (451)
=|.+++..+ ++.+++...-+--+.--+.........|-.|.|.+.+..+.++-.......-.-+...|.
T Consensus 89 GIQALAEmn-----------rWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~ 157 (309)
T PF07163_consen 89 GIQALAEMN-----------RWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYG 157 (309)
T ss_pred hHHHHHHHh-----------hHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhH
Confidence 466777777 777776654443332222344556667777899999999999888877653233445587
Q ss_pred HHHHHHHh-----cCCHHHHHHHH
Q 013010 327 SFIRYYSV-----VNEIDKAIEMM 345 (451)
Q Consensus 327 ~li~~~~~-----~g~~~~A~~~~ 345 (451)
.+...|.. .|.+++|+++.
T Consensus 158 ~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 158 TVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHhccccHHHHHHHH
Confidence 77777665 58888888877
No 319
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.53 E-value=82 Score=28.78 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-----hCCCCCCHHHH
Q 013010 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV-----DGGSVPREYTY 396 (451)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t~ 396 (451)
++..-..|..+|.+.+|.++.+...+.+ +.+...+-.|+..+...|+--+|.+-++.|. +.|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3445566777888888888888877766 5677777788888888888666666666554 33666554433
No 320
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=71.39 E-value=38 Score=32.95 Aligned_cols=164 Identities=15% Similarity=0.137 Sum_probs=88.9
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH-----------ccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHH
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFA-----------RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK 177 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~-----------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~ 177 (451)
..++++|+++.+.+... ..|...+.... ..+.+++-.++++.+.+.|.. | .....|+
T Consensus 27 ~vd~~eav~y~k~~p~~-------k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g~a---d--~lp~TID 94 (480)
T TIGR01503 27 DVDLQDAVDYHKSIPAH-------KNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEGGA---D--FLPSTID 94 (480)
T ss_pred cCCHHHHHHHHHhCCcc-------ccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHccCC---C--ccceeee
Confidence 34689999987776532 22222332222 234688889999999888722 2 3556789
Q ss_pred HHHhcCCHHHHHHHHHHHhhC------CCC---CCHHHHHHHHHHHH-----hcCChHHHHHHHHHhhhCCCCC-CCCHH
Q 013010 178 VLGEEGLVNEALATFYRMKQF------RCR---PDVYAYNVVINALC-----RVGNFNKARFLLEQMELPGFRC-PPDVY 242 (451)
Q Consensus 178 ~~~~~g~~~~A~~~~~~m~~~------g~~---p~~~~~~~li~~~~-----~~g~~~~a~~~~~~m~~~g~~~-~p~~~ 242 (451)
.|.+.+++++|...+++-.+. |++ ....+...++...- +.| -..+..+++-+...|+.- .-...
T Consensus 95 SyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHG-tpDarlL~e~~~a~G~~a~EGG~I 173 (480)
T TIGR01503 95 AYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHG-TPDARLLAEIILAGGFTSFEGGGI 173 (480)
T ss_pred cccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCC-CCcHHHHHHHHHHcCCCccCCCcc
Confidence 999999999999999988763 322 12333344444321 112 124555666665555430 00112
Q ss_pred HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHH
Q 013010 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292 (451)
Q Consensus 243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 292 (451)
+||. -|++.-..+.+.. .|+.+-++.-...+.|+..|..+|..
T Consensus 174 SYnl---PYsK~vpLe~si~----~WqyvdRL~g~y~e~gv~InrE~FGp 216 (480)
T TIGR01503 174 SYNI---PYAKNVTLEKSLE----DWQYCDRLVGFYEEQGVHINREPFGP 216 (480)
T ss_pred eecc---ccCCCCCHHHHHH----HHHHHHHHHHHHHhcCceeccccccC
Confidence 2322 2222222222221 45555555555556676666666543
No 321
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=70.59 E-value=63 Score=27.10 Aligned_cols=205 Identities=17% Similarity=0.071 Sum_probs=96.1
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
...+......+...+.+..+...+...... .........+......+...++...+.+.+.........+ ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLA 136 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHH
Confidence 344555555555566666666665555442 0011233344455555555556666666666655533222 11111222
Q ss_pred H-HHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010 212 N-ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290 (451)
Q Consensus 212 ~-~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 290 (451)
. .+...|+++.|...+.+..............+......+...+ +.+.+...+..............+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~ 205 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG-----------RYEEALELLEKALKLNPDDDAEAL 205 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc-----------CHHHHHHHHHHHHhhCcccchHHH
Confidence 2 4556666666666666653311000012222333333333444 555666666655543211124445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351 (451)
Q Consensus 291 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (451)
..+-..+...+.++.|...+....... |+ ...+..+...+...+..+.+...+......
T Consensus 206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 206 LNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555566666666666555442 22 233333333333455566666666555554
No 322
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.66 E-value=79 Score=28.68 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=60.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q 013010 293 LIDGCCKTYRIERALELFDDMNKK--GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370 (451)
Q Consensus 293 li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 370 (451)
=|.+++..++|.++.-..-+--+. .++ ......-|-.|.+.+.+..+.++-....+.-. .-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklP--pkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLP--PKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLL 165 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHH
Confidence 467888899999887754443222 233 34445556678899999999999888776543 3344558888777766
Q ss_pred -----cCCHHHHHHHH
Q 013010 371 -----AGRVLEARDFL 381 (451)
Q Consensus 371 -----~g~~~~A~~l~ 381 (451)
.|.+++|.++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 49999999876
No 323
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.41 E-value=90 Score=28.40 Aligned_cols=159 Identities=13% Similarity=0.070 Sum_probs=79.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-------HHHHHHHHhcCChHHHHHHHHHhhhC--CCCCCCCHHHHH
Q 013010 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY-------NVVINALCRVGNFNKARFLLEQMELP--GFRCPPDVYTYT 245 (451)
Q Consensus 175 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~p~~~~~~ 245 (451)
+.+...+.+++++|+..|.+....|+..|..+. ..+...|...|++....++....+.. .+.-+-.+....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 344455667777777777777777766554443 34555666677665544443322111 111122444555
Q ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC-----CCHhhHHHHHHHHHhcCCHHHHHHHHHH----HHhC
Q 013010 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-----PDVVAYNCLIDGCCKTYRIERALELFDD----MNKK 316 (451)
Q Consensus 246 ~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~ 316 (451)
+|+..+....+ .++.-..+.....+...+ .-...=..++..+.+.|.+.+|..+... +++.
T Consensus 89 tLiekf~~~~d----------sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 89 TLIEKFPYSSD----------SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred HHHHhcCCCCc----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 66665544432 233333333222211000 0112224578889999999999886654 4455
Q ss_pred CCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 013010 317 GCIPNRVTYNSF-IRYYSVVNEIDKAIE 343 (451)
Q Consensus 317 g~~p~~~t~~~l-i~~~~~~g~~~~A~~ 343 (451)
.-+|+..+...+ -.+|-...++.++..
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~Kska 186 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKA 186 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhh
Confidence 555654443322 123444444444333
No 324
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.01 E-value=38 Score=28.46 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH
Q 013010 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252 (451)
Q Consensus 220 ~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~ 252 (451)
+++|...|+...... |+..+|+.-+....
T Consensus 96 F~kA~~~FqkAv~~~----P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 96 FEKATEYFQKAVDED----PNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHH-----TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC----CCcHHHHHHHHHHH
Confidence 344555555555443 77777777776654
No 325
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=68.95 E-value=12 Score=20.85 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010 205 YAYNVVINALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 205 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
..|..+-..+...|++++|.+.|++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 456777888999999999999999987653
No 326
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.35 E-value=1.8e+02 Score=31.36 Aligned_cols=39 Identities=5% Similarity=0.134 Sum_probs=23.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334 (451)
Q Consensus 296 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 334 (451)
.|++....+.+...++.+....-.++..-.+.++.-|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 345555666666666666655555555566666666554
No 327
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=67.86 E-value=1.2e+02 Score=29.10 Aligned_cols=249 Identities=13% Similarity=0.080 Sum_probs=159.2
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010 109 TLGLNKATEFYHWVERFFDFFHN-EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 187 (451)
.|+.+.|..-|+-|... +-+ .--...|.-.--+.|..+.|...-+........ -.-.+..++...|..|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~---l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ---LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC---CchHHHHHHHHHHhcCChHH
Confidence 57789999999999842 111 112333333445789999999988887665422 23357889999999999999
Q ss_pred HHHHHHHHhhCC-CCCCHHHH--HHHHHHHHh---cCChHHHHHHHHHhhhCCCCCCCCHHH-HHHHHHHHHhcCCchhh
Q 013010 188 ALATFYRMKQFR-CRPDVYAY--NVVINALCR---VGNFNKARFLLEQMELPGFRCPPDVYT-YTILISSYCKYGMQTGC 260 (451)
Q Consensus 188 A~~~~~~m~~~g-~~p~~~~~--~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~p~~~~-~~~li~~~~~~g~~~~~ 260 (451)
|+++++.-++.. +.++..-- ..|+.+-.. ..+...|...-.+..+.. ||..- -..-..++.+.|
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~----pdlvPaav~AAralf~d~----- 277 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLA----PDLVPAAVVAARALFRDG----- 277 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC----CccchHHHHHHHHHHhcc-----
Confidence 999999877643 34443322 233322211 233445555544444332 55433 233456788888
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCH
Q 013010 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK-KGCIP-NRVTYNSFIRYYSVVNEI 338 (451)
Q Consensus 261 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p-~~~t~~~li~~~~~~g~~ 338 (451)
++.++-.+++.+-+..-+|+. . .+..+.+.|+. +..-++...+ ..++| +..+--.+..+-...|++
T Consensus 278 ------~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 278 ------NLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred ------chhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 888999999999887555553 2 33445566653 3333333221 12344 456667778888889999
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHhC
Q 013010 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE-AGRVLEARDFLAELVDG 387 (451)
Q Consensus 339 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~ 387 (451)
..|..--+..... .|....|..|.+.-.- .|+-.++...+.+-+..
T Consensus 346 ~~ARa~Aeaa~r~---~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 346 SAARAKAEAAARE---APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhhh---CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8888777666553 5888888887776544 49999999998887754
No 328
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.79 E-value=44 Score=24.23 Aligned_cols=65 Identities=20% Similarity=0.142 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchH
Q 013010 341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL 412 (451)
Q Consensus 341 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 412 (451)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. .| | ..|..+++++...|.-+.|
T Consensus 21 ~~~v~d~ll~~~i--lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL--LTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhh
Confidence 4455555555553 333333333322234566666666666665 33 2 2566666666666665544
No 329
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=67.07 E-value=71 Score=27.92 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=64.6
Q ss_pred CCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CccHHhHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 013010 126 FDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRP 202 (451)
Q Consensus 126 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p 202 (451)
..+.+....+|.|+--|.-...+.+|-+.|. ...|+.+ ..+..+++ .-|......|++++|.+....+...=+.-
T Consensus 20 ~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~ 97 (228)
T KOG2659|consen 20 MKVSVMREDLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT 97 (228)
T ss_pred hccCcchhhHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc
Confidence 3567788888888877766666666666663 3444444 33444443 46777899999999999998886543334
Q ss_pred CHHHHHHHH----HHHHhcCChHHHHHHHHH
Q 013010 203 DVYAYNVVI----NALCRVGNFNKARFLLEQ 229 (451)
Q Consensus 203 ~~~~~~~li----~~~~~~g~~~~a~~~~~~ 229 (451)
|...+-.|. --..+.|..++|+++++.
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 432332221 124567777777777654
No 330
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.96 E-value=13 Score=22.97 Aligned_cols=20 Identities=10% Similarity=0.346 Sum_probs=8.2
Q ss_pred HHHHccCChhHHHHHHHHHH
Q 013010 140 IVFARGNNVKGLWDFLKDMS 159 (451)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~ 159 (451)
.+|...|+.+.|.++++++.
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33444444444444444433
No 331
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.71 E-value=52 Score=25.87 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 013010 150 GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR 194 (451)
Q Consensus 150 ~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 194 (451)
.+.++|..|..+|+... .+.-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~-~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTK-LALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTT-BHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHH-HHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777777766542 344566666777777777777777754
No 332
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=66.07 E-value=1.4e+02 Score=29.25 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHH--HHccCChhHHHHHHHHHHHc--CCCC-CccH---------HhHHHHHH
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIV--FARGNNVKGLWDFLKDMSRR--GNGE-LVTT---------SSVTCLIK 177 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~~--~~~~-~~~~---------~~~~~li~ 177 (451)
++..........+..|- ..|-.+..+ +-+.+.+.+|.+.+.....+ +..+ -.+. .-=+..+.
T Consensus 61 ld~Me~~l~~l~~~~~~----s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 61 LDLMEKQLMELRQQFGK----SAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred HHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 34444444445444332 234444443 34678899999988776655 2111 1111 11245678
Q ss_pred HHHhcCCHHHHHHHHHHHhhC----CCCCCHHHHHHHHHHHHhc
Q 013010 178 VLGEEGLVNEALATFYRMKQF----RCRPDVYAYNVVINALCRV 217 (451)
Q Consensus 178 ~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~ 217 (451)
++...|.+.++..+++++... .+.-+..+||-++-.+++.
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 889999999999999888664 3447889998866555543
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=66.00 E-value=18 Score=20.25 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010 171 SVTCLIKVLGEEGLVNEALATFYRMKQ 197 (451)
Q Consensus 171 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 197 (451)
+|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555566666666666655543
No 334
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.76 E-value=55 Score=24.55 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=24.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 013010 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388 (451)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 388 (451)
..+.+.|++++|..+.+.+ . -||...|-.|.. .+.|-.+++..-+.+|..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~-~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----C-YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----C-CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445555555555554443 1 355555544432 24444444444444444443
No 335
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.51 E-value=50 Score=25.91 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 013010 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (451)
Q Consensus 187 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 233 (451)
+..+.++.+...++.|+.......+.+|-+.+++..|.++|+-.+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45566666677777888888888888888888888888888877765
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=65.21 E-value=11 Score=20.04 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=7.6
Q ss_pred HHHHHHcCCHHHHHHHH
Q 013010 365 IHALCEAGRVLEARDFL 381 (451)
Q Consensus 365 i~~~~~~g~~~~A~~l~ 381 (451)
..++...|++++|..++
T Consensus 8 a~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 8 ARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 34444444444444443
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.78 E-value=98 Score=31.33 Aligned_cols=94 Identities=16% Similarity=0.076 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (451)
+++.|.++..+.. +..-|..|-.+....+++..|.+.|....+ |..|+-.+...|+-+....+-.
T Consensus 652 rl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 652 RLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred cHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 6777777665543 556788888888999999999888876543 5667778888888877777777
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 013010 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382 (451)
Q Consensus 347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 382 (451)
..++.|. .|...-+|...|+++++.+++.
T Consensus 717 ~~~~~g~-------~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 717 LAKKQGK-------NNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHhhcc-------cchHHHHHHHcCCHHHHHHHHH
Confidence 7776663 2344556778899999988764
No 338
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.92 E-value=1.2e+02 Score=31.66 Aligned_cols=200 Identities=15% Similarity=0.144 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhhcCCCCC---CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-----ccHHhHHHHHHHHHhcCC
Q 013010 113 NKATEFYHWVERFFDFFH---NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL-----VTTSSVTCLIKVLGEEGL 184 (451)
Q Consensus 113 ~~A~~~f~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~~~li~~~~~~g~ 184 (451)
++--+.+++|..+. -.| +..+...++..|....+++...++.+.+.+.....+ .-...|.--++---+-|+
T Consensus 180 ~~l~~~L~~mR~Rl-Dnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRL-DNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred HHHHHHHHHHHhhc-CCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCcc
Confidence 34445566666542 223 345566677778888888888888888876531000 001123333333344577
Q ss_pred HHHHHHHHHHHhhCC--CCCCHHH-----HHH--HHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 185 VNEALATFYRMKQFR--CRPDVYA-----YNV--VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g--~~p~~~~-----~~~--li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
-++|+.+.-.|.+.. +.||... |.- +-+.|..++..+.|.++|.+.-+. .|+..+=-.+...+...|
T Consensus 259 RakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev----eP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV----EPLEYSGINLATLLRAAG 334 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc----CchhhccccHHHHHHHhh
Confidence 788888776666542 4555432 211 112334445566677777665432 255443222222223333
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013010 256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335 (451)
Q Consensus 256 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 335 (451)
. .++..+ +|..-|+ +.|+ .+.+.|.++...+.|+- .+| +.+-.-+
T Consensus 335 ~----------~Fens~----Elq~Igm-----kLn~---LlgrKG~leklq~YWdV----------~~y---~~asVLA 379 (1226)
T KOG4279|consen 335 E----------HFENSL----ELQQIGM-----KLNS---LLGRKGALEKLQEYWDV----------ATY---FEASVLA 379 (1226)
T ss_pred h----------hccchH----HHHHHHH-----HHHH---HhhccchHHHHHHHHhH----------HHh---hhhhhhc
Confidence 1 222222 2222221 2222 33567777766666542 222 2333446
Q ss_pred CCHHHHHHHHHHHHhcC
Q 013010 336 NEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 336 g~~~~A~~~~~~m~~~~ 352 (451)
+++.+|.+.-+.|-+..
T Consensus 380 nd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 380 NDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred cCHHHHHHHHHHHhccC
Confidence 77777777777777654
No 339
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=62.21 E-value=1.4e+02 Score=27.97 Aligned_cols=66 Identities=11% Similarity=0.079 Sum_probs=50.6
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP---NRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 285 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
....++..+...+.+.|+++.|...+..+...+... ++...-.-.......|+-.+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888899999999999999999988754222 344455556677788999999999888776
No 340
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.91 E-value=38 Score=28.87 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=17.9
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 355 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
.|++..|..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555543
No 341
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=61.62 E-value=77 Score=24.87 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 013010 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383 (451)
Q Consensus 340 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 383 (451)
.+.++|..|...+++.-.+..|..-...+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777777777666666777777777777777777777654
No 342
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=60.99 E-value=79 Score=29.09 Aligned_cols=111 Identities=10% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326 (451)
Q Consensus 247 li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 326 (451)
++..+.+.. ++...++.+..+. ....-...+..+...|++..|.+++.+..+. ...+.
T Consensus 104 Il~~~rkr~-----------~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-----l~~l~ 161 (291)
T PF10475_consen 104 ILRLQRKRQ-----------NLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-----LEELK 161 (291)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----HHhcc
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCChhhHHHHHHHHHHcCCHHHHHH
Q 013010 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHG----VPTSSSYTPIIHALCEAGRVLEARD 379 (451)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~ 379 (451)
.+-..---..++++-....+++...... ..|+..|..++.||.-.|+...+.+
T Consensus 162 ~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 162 GYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred cchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
No 343
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.62 E-value=1.1e+02 Score=26.22 Aligned_cols=128 Identities=9% Similarity=-0.034 Sum_probs=80.8
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
..|..++.... .+.. +.....+.+...+... .-.++. .+...+...|++++|..-++..... |....+..+
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t--~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l 127 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKT--IYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhcccc--HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHH
Confidence 35666666654 3333 5556666666654222 111222 2346678899999999999987752 334444433
Q ss_pred -----HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC
Q 013010 211 -----INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282 (451)
Q Consensus 211 -----i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~ 282 (451)
-......|.+|+|+++++.....+. .......--+.+...| +-++|..-|....+.+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w----~~~~~elrGDill~kg-----------~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESW----AAIVAELRGDILLAKG-----------DKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccH----HHHHHHHhhhHHHHcC-----------chHHHHHHHHHHHHcc
Confidence 4556778999999999998876653 3334555667888888 5666666666666553
No 344
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.59 E-value=35 Score=21.51 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=17.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 181 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
+.|-+.++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555666666666666555555555544
No 345
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=60.08 E-value=39 Score=31.46 Aligned_cols=47 Identities=15% Similarity=0.071 Sum_probs=27.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 013010 177 KVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARF 225 (451)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~ 225 (451)
+-|.+.|.+++|+..|..-.. +.| +.++|..-..+|.+...+..|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 445666666666666665554 234 56666666666666665554443
No 346
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=60.03 E-value=2.2e+02 Score=29.51 Aligned_cols=199 Identities=11% Similarity=0.013 Sum_probs=116.0
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHHH-HcCCCCCccHHhHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCCCHH--
Q 013010 130 HNEMTCKEMGIVFARGNNVKGLWDFLKDMS-RRGNGELVTTSSVTCLIKVLG-EEGLVNEALATFYRMKQFRCRPDVY-- 205 (451)
Q Consensus 130 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~-- 205 (451)
.+...|..||.. |.+.++.+. +....|.....++-.+...+. ...++++|...+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 345667777655 666666666 334444445566666677666 5789999999999775432222222
Q ss_pred ---HHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CCCCCHHHHHHH-HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010 206 ---AYNVVINALCRVGNFNKARFLLEQMELPGF--RCPPDVYTYTIL-ISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279 (451)
Q Consensus 206 ---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~p~~~~~~~l-i~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~ 279 (451)
.-..++..+.+.+... |.+.+++..+.-- ...+-...|.-+ +..+...+ +...|.+.++.+.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~-----------d~~~Al~~L~~~~ 166 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHK-----------DYNAALENLQSIA 166 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHH
Confidence 1234566667666655 8888877554321 111334444444 33333335 6777888887765
Q ss_pred hcC---CCCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--hcCCHHHHHH
Q 013010 280 FKG---FVPDVVAYNCLIDGCC--KTYRIERALELFDDMNKKG---------CIPNRVTYNSFIRYYS--VVNEIDKAIE 343 (451)
Q Consensus 280 ~~~---~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g---------~~p~~~t~~~li~~~~--~~g~~~~A~~ 343 (451)
..- ..|-..++-.++.+.. ..+..+++.+.++.+.... ..|-..+|..++..++ ..|+++.+..
T Consensus 167 ~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~ 246 (608)
T PF10345_consen 167 QLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQ 246 (608)
T ss_pred HHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 421 2344455555555554 4565677777777764322 2345677777776554 5677666666
Q ss_pred HHHHHH
Q 013010 344 MMRKMQ 349 (451)
Q Consensus 344 ~~~~m~ 349 (451)
.++++.
T Consensus 247 ~L~~lq 252 (608)
T PF10345_consen 247 KLKQLQ 252 (608)
T ss_pred HHHHHH
Confidence 655433
No 347
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=59.47 E-value=14 Score=20.34 Aligned_cols=20 Identities=10% Similarity=0.353 Sum_probs=9.9
Q ss_pred HHHhcCChHHHHHHHHHhhh
Q 013010 213 ALCRVGNFNKARFLLEQMEL 232 (451)
Q Consensus 213 ~~~~~g~~~~a~~~~~~m~~ 232 (451)
++.+.|++++|.+.|+++..
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 34444555555555555443
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.44 E-value=1.3e+02 Score=30.59 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=49.6
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 188 (451)
.++++.|.++-.+.. +..-|..|..+....+++..|.+.|.+... |..|+-.+...|+.+..
T Consensus 650 lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 650 LGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD-----------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred cCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----------hhhhhhhhhhcCChhHH
Confidence 344555555433332 445566666666666666666666544221 44555555555655544
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 013010 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230 (451)
Q Consensus 189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 230 (451)
..+-...++.|. .|....+|...|+++++.+++..-
T Consensus 712 ~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 444444444331 122223355566666666666543
No 349
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=59.03 E-value=1.6e+02 Score=27.58 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=30.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 013010 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (451)
Q Consensus 176 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 233 (451)
..+.-+.|+++...+........ .++...|.++... +.++++++....+.....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 45556677777744444444432 2345555555433 667777777776666543
No 350
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.92 E-value=82 Score=24.77 Aligned_cols=42 Identities=12% Similarity=0.298 Sum_probs=20.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 309 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
-++.+..-.+.|++.....-++++.+.+++..|.++|+-.+.
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555554443
No 351
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.81 E-value=1.2e+02 Score=31.60 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCCC-CccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----------HHHHHHHHHHhcCC
Q 013010 151 LWDFLKDMSRRGNGE-LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY----------AYNVVINALCRVGN 219 (451)
Q Consensus 151 a~~~~~~m~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------~~~~li~~~~~~g~ 219 (451)
-...+.+|..+-..| ..+..+...++-.|-...+++...++.+.++.. ||.. .|...++---+-|+
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCcc
Confidence 344555665553222 234555666666777777777777777777662 3322 12333333334466
Q ss_pred hHHHHHHHHHhhhCCCCCCCCH
Q 013010 220 FNKARFLLEQMELPGFRCPPDV 241 (451)
Q Consensus 220 ~~~a~~~~~~m~~~g~~~~p~~ 241 (451)
-++|+...--|.+....+.||.
T Consensus 259 RakAL~~~l~lve~eg~vapDm 280 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDM 280 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCce
Confidence 6677766655554443345653
No 352
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=58.20 E-value=60 Score=33.13 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH
Q 013010 292 CLIDGCCKTYRIERALELFDDMNKK--GCIPNRVTYNSFIRYYSVVNEI 338 (451)
Q Consensus 292 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~ 338 (451)
+|+.+|...|++-++.++++.+... |-+.-...||..|+.+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5677777777777777777776543 3333345666667777776654
No 353
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.12 E-value=1.4e+02 Score=26.88 Aligned_cols=187 Identities=12% Similarity=0.087 Sum_probs=112.5
Q ss_pred cCHHHHHHHHHHHhhcCCCCC--CHHhHHHHHHHHHccCChhHHHHHHHHHHH---cCCCCCccHHhHHHHHHHHHhcCC
Q 013010 110 LGLNKATEFYHWVERFFDFFH--NEMTCKEMGIVFARGNNVKGLWDFLKDMSR---RGNGELVTTSSVTCLIKVLGEEGL 184 (451)
Q Consensus 110 ~~~~~A~~~f~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~~~li~~~~~~g~ 184 (451)
..+++|+.-|....+..|-+. .......++....+.+++++....+.++.. ..+....+..+.|+++.--....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 358999999998886533332 234667788999999999999988887753 223334466778888887777777
Q ss_pred HHHHHHHHHHHhhC-CCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHhhhCCCC---------CCCCHHHHHHHHHH
Q 013010 185 VNEALATFYRMKQF-RCRPDVYAY----NVVINALCRVGNFNKARFLLEQMELPGFR---------CPPDVYTYTILISS 250 (451)
Q Consensus 185 ~~~A~~~~~~m~~~-g~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~---------~~p~~~~~~~li~~ 250 (451)
.+.-.+.|+.-.+. .-..+...| .-|-..|...|.+....+++.++..+.-. -.--..+|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 76666665543321 000112222 34556677788888888888888653110 00123567777777
Q ss_pred HHhcCCchhhhHHHHHHHHHHHHHHHHHHhc-CCCCCHhhHHHHHHHH-----HhcCCHHHHHH
Q 013010 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPDVVAYNCLIDGC-----CKTYRIERALE 308 (451)
Q Consensus 251 ~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~-----~~~g~~~~a~~ 308 (451)
|.... +-.....++++...- .--|.+.... +|+-| .+.|++++|..
T Consensus 201 YT~qK-----------nNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 201 YTEQK-----------NNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhc-----------ccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 77766 444555566654432 1223333332 34433 35677887754
No 354
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=58.11 E-value=8 Score=30.49 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=23.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013010 369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403 (451)
Q Consensus 369 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 403 (451)
...|.-.+|..+|..|++.|-+|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 344556678888888888888887 466666543
No 355
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.24 E-value=2.8e+02 Score=29.93 Aligned_cols=120 Identities=12% Similarity=0.046 Sum_probs=71.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCCccHHhHHHHHHHHHhcCCH--HHHHHHHHHHhhCC----CC--C--
Q 013010 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLV--NEALATFYRMKQFR----CR--P-- 202 (451)
Q Consensus 134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g----~~--p-- 202 (451)
-|..|+..|...|+.++|++++.+.....- ........+..++.-+.+.+.. +-+++.-+...+.. ++ -
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 578889999999999999999998877431 1111222344455555555544 55555444444321 10 0
Q ss_pred CH---HHH-HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 203 DV---YAY-NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 203 ~~---~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
|. .+. ...+-.|+.....+.+..+++.+....-. ++..-.+.++.-|++.-
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~--~~~~lht~ll~ly~e~v 640 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRL--TSTLLHTVLLKLYLEKV 640 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccc--cchHHHHHHHHHHHHHH
Confidence 00 000 01233466677788888899888776543 67777778888877644
No 356
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.15 E-value=1.1e+02 Score=27.95 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=49.8
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCChhhHHHHH-HHHHHcCCHHHHHHHHH
Q 013010 308 ELFDDMNKK-GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG---VPTSSSYTPII-HALCEAGRVLEARDFLA 382 (451)
Q Consensus 308 ~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~p~~~~~~~li-~~~~~~g~~~~A~~l~~ 382 (451)
+-+++..+. |-.--...+..+...|++.++.+.+.+..++..+.... +.|+...-+-+ -.|....-+++-++..+
T Consensus 100 e~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~ 179 (412)
T COG5187 100 ERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVAD 179 (412)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 334444433 22334566777888999999999988888776554321 33332222111 12333334677888888
Q ss_pred HHHhCCCCCC
Q 013010 383 ELVDGGSVPR 392 (451)
Q Consensus 383 ~m~~~g~~p~ 392 (451)
.|++.|..-+
T Consensus 180 ~~iEkGgDWe 189 (412)
T COG5187 180 DIIEKGGDWE 189 (412)
T ss_pred HHHHhCCCHH
Confidence 8888876544
No 357
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=56.38 E-value=73 Score=29.75 Aligned_cols=55 Identities=18% Similarity=0.102 Sum_probs=36.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010 295 DGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351 (451)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (451)
+-|.+.|.+++|++.|..-... .| |.+++..-..+|.+...+..|..-.......
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL 160 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3467777788887777765443 45 6677777777777777777666665555543
No 358
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.35 E-value=32 Score=23.07 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 013010 363 PIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 363 ~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555555555543
No 359
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.80 E-value=34 Score=29.16 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=19.8
Q ss_pred CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 013010 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRR 161 (451)
Q Consensus 127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 161 (451)
...|+...|..++.++...|+.++|.+...++...
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555555555666666666665555555443
No 360
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=55.37 E-value=1.3e+02 Score=27.97 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=36.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 296 GCCKTYRIERALELFDDMNKKGCIPNRVTY---NSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 296 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
+-.+.|+..+|.++++++.+. .|-...+ ..||.++....-+.++..++-+..+..
T Consensus 284 CARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334678888888888887655 2322222 457777777777777777776665544
No 361
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=54.78 E-value=2.5e+02 Score=28.69 Aligned_cols=220 Identities=10% Similarity=0.081 Sum_probs=104.2
Q ss_pred CChhHHHHHHHHHHHcCCCC--CccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 013010 146 NNVKGLWDFLKDMSRRGNGE--LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223 (451)
Q Consensus 146 g~~~~a~~~~~~m~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 223 (451)
...++..+.+.++.+..... .+....+..|+..+. .-+.+.-.++++++.. - + ...+..++++....|-....
T Consensus 285 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~ 359 (574)
T smart00638 285 SNEVQIVEVLKHLVQDIASDVQEPAAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPAL 359 (574)
T ss_pred CchhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHH
Confidence 34445555555544332110 124556666666553 4456666777777654 1 1 67788888888888876666
Q ss_pred HHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc-CCCCCH-------hhHHHHHH
Q 013010 224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPDV-------VAYNCLID 295 (451)
Q Consensus 224 ~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-------~~~~~li~ 295 (451)
.-+.+.+....+ ++...-..+.....-... --.+..+.+.++.+. ...+.. .+|.+++.
T Consensus 360 ~~i~~~i~~~~~---~~~ea~~~~~~~~~~~~~----------Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~ 426 (574)
T smart00638 360 KFIKQWIKNKKI---TPLEAAQLLAVLPHTARY----------PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVR 426 (574)
T ss_pred HHHHHHHHcCCC---CHHHHHHHHHHHHHhhhc----------CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHH
Confidence 666665555443 233333333333222211 112444444444442 344443 34555555
Q ss_pred HHHhcCCH------HHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013010 296 GCCKTYRI------ERALELFDDMNKKGC-IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368 (451)
Q Consensus 296 ~~~~~g~~------~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 368 (451)
-+|..... ++....+.+...... .-|..--...|.++.+.|....... +..... |....+...=...+.++
T Consensus 427 ~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~-l~~~l~-~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 427 RYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKV-LEPYLE-GAEPLSTFIRLAAILAL 504 (574)
T ss_pred HHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHH-HHHhcC-CCCCCCHHHHHHHHHHH
Confidence 55544331 233333333222111 1133334556777777776544433 333332 22133334444555555
Q ss_pred HHc--CCHHHHHHHHHHHH
Q 013010 369 CEA--GRVLEARDFLAELV 385 (451)
Q Consensus 369 ~~~--g~~~~A~~l~~~m~ 385 (451)
.+. ...+++..++-...
T Consensus 505 r~~a~~~p~~v~~~l~~i~ 523 (574)
T smart00638 505 RNLAKRDPRKVQEVLLPIY 523 (574)
T ss_pred HHHHHhCchHHHHHHHHHH
Confidence 543 34555555544443
No 362
>PHA03100 ankyrin repeat protein; Provisional
Probab=54.49 E-value=1.5e+02 Score=29.31 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=6.9
Q ss_pred HHHHHHHhCCCCCC
Q 013010 379 DFLAELVDGGSVPR 392 (451)
Q Consensus 379 ~l~~~m~~~g~~p~ 392 (451)
++++.+.+.|..++
T Consensus 297 ~iv~~Ll~~g~~i~ 310 (480)
T PHA03100 297 EIFKLLLNNGPSIK 310 (480)
T ss_pred HHHHHHHhcCCCHH
Confidence 34445556665333
No 363
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=53.96 E-value=2.5e+02 Score=28.41 Aligned_cols=301 Identities=8% Similarity=0.034 Sum_probs=169.7
Q ss_pred cCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH-ccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHH
Q 013010 101 AYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFA-RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL 179 (451)
Q Consensus 101 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~ 179 (451)
++++.-...|.++.+..+|+.... +++.+...|...+..++ ..|+.+...+.|+..+......-.+...|...|.--
T Consensus 84 kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~e 161 (577)
T KOG1258|consen 84 KFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFE 161 (577)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHH
Confidence 334445567889999999999884 68888888888776665 457888888899888776433334556788888888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---c------CChHHHHHHHHHhhhC---CCCCCCCHHHHHHH
Q 013010 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR---V------GNFNKARFLLEQMELP---GFRCPPDVYTYTIL 247 (451)
Q Consensus 180 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~------g~~~~a~~~~~~m~~~---g~~~~p~~~~~~~l 247 (451)
..++++.....+|++.++. | ..-|+..-.-|.+ . ...+++.++-...... +.. .+.......-
T Consensus 162 n~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~-~~~~e~~~~~ 236 (577)
T KOG1258|consen 162 NGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHS-QEPLEELEIG 236 (577)
T ss_pred hccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccc-cChhHHHHHH
Confidence 8889999999999999872 2 2333333222222 1 1233333332222210 000 0111112111
Q ss_pred HHHHHhcCCc-hhhhHHHH-----------H--HHHHHHHHHHHHHhc---CC----CCCHhhHHHHHHHHHhcCCHHHH
Q 013010 248 ISSYCKYGMQ-TGCRKAIR-----------R--RIWEANHLFRLMLFK---GF----VPDVVAYNCLIDGCCKTYRIERA 306 (451)
Q Consensus 248 i~~~~~~g~~-~~~~~~~~-----------~--~~~~a~~~~~~m~~~---~~----~~~~~~~~~li~~~~~~g~~~~a 306 (451)
+..-...+.. +....... + ...+....|++-..+ .+ .++..+|+.-+.--.+.|+.+.+
T Consensus 237 v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~ 316 (577)
T KOG1258|consen 237 VKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRV 316 (577)
T ss_pred HhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHH
Confidence 1111111100 00000000 0 011111111111111 11 23567788888888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 013010 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE-AGRVLEARDFLAELV 385 (451)
Q Consensus 307 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~ 385 (451)
.-+|+.+.-. |.-=...|--.+.-....|+.+.|..++....+-. .|+......+-..++. .|+++.|..+++...
T Consensus 317 ~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~--~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 317 FILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIH--VKKTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred HHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc--CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 9999987643 22223334444444445599999988887766644 3443333333333444 579999999999988
Q ss_pred hCCCCCCHHH-HHHHHHHHHhcCCCchHH
Q 013010 386 DGGSVPREYT-YKLVCDALNAAEEPSLLD 413 (451)
Q Consensus 386 ~~g~~p~~~t-~~~li~~~~~~g~~~~a~ 413 (451)
+.- |+..- -..-+....+.|..+.+.
T Consensus 394 ~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 394 SEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 663 55322 222355567777777554
No 364
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.87 E-value=96 Score=23.58 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 360 SYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
-|..|+.-|...|.+++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777777777777777777765
No 365
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.86 E-value=1.6e+02 Score=26.10 Aligned_cols=187 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-----hhCCCCCCCCHHHHHHHHHHHHhcCCchhhh
Q 013010 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM-----ELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261 (451)
Q Consensus 187 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~ 261 (451)
++.++..+..+......... .+...+++++|-++|.+. ...... .--..|--....+.+.|..+.+.
T Consensus 3 ~a~~l~k~AEkK~~~s~gF~------lfgg~~k~eeAadl~~~Aan~yklaK~w~--~AG~aflkaA~~h~k~~skhDaa 74 (288)
T KOG1586|consen 3 DAVQLMKKAEKKLNGSGGFL------LFGGSNKYEEAAELYERAANMYKLAKNWS--AAGDAFLKAADLHLKAGSKHDAA 74 (288)
T ss_pred cHHHHHHHHHHhcccCCccc------ccCCCcchHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHhcCCchhHH
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341 (451)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 341 (451)
. .+-+|-..|+.. ...--+.....-|..|...|++..|-....++-+. ...+..-+..-|..|-..+++-..
T Consensus 75 t----~YveA~~cykk~---~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 75 T----TYVEAANCYKKV---DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred H----HHHHHHHHhhcc---ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcc
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013010 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398 (451)
Q Consensus 342 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 398 (451)
.+.-....+... -+...-+..+++.+|+++|++.....+.-+..-|+.
T Consensus 147 ees~ssANKC~l---------KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 147 EESVSSANKCLL---------KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhhhhhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
No 366
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.72 E-value=28 Score=31.76 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=25.8
Q ss_pred CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 013010 318 CIPNRVT-YNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353 (451)
Q Consensus 318 ~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 353 (451)
+.||..+ |+.-|....+.|++++|+.+++|.++.|.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455444 46777777888888888888888887775
No 367
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.40 E-value=85 Score=22.81 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=17.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010 299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341 (451)
Q Consensus 299 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 341 (451)
..|+.+.|.+++..+. .| +..|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3455555555555555 32 22345555555554444333
No 368
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.90 E-value=1e+02 Score=23.49 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010 172 VTCLIKVLGEEGLVNEALATFYRMKQ 197 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~m~~ 197 (451)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77888888888888888888887776
No 369
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=52.28 E-value=1.2e+02 Score=31.40 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=42.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 013010 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM 256 (451)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~ 256 (451)
..+.-.|+++.|.+.+-+ ..+...|.+.+.+.+.-|.-.+-.+... ..+...... .|...-+..||..|++.=.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~-~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPG-DPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCC-CCCCcCHHHHHHHHHHHHh
Confidence 444557899999988877 2234456677766665543222111111 222221110 0122567888999988443
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhc
Q 013010 257 QTGCRKAIRRRIWEANHLFRLMLFK 281 (451)
Q Consensus 257 ~~~~~~~~~~~~~~a~~~~~~m~~~ 281 (451)
.. +..+|.++|--+...
T Consensus 340 ~t--------d~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 IT--------DPREALQYLYLICLF 356 (613)
T ss_dssp TT---------HHHHHHHHHGGGGS
T ss_pred cc--------CHHHHHHHHHHHHHc
Confidence 22 677788877766543
No 370
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=52.21 E-value=1.4e+02 Score=25.11 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 013010 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300 (451)
Q Consensus 221 ~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 300 (451)
++|..-|++..... |-...++..+-.+|...+....-...-+..+++|...|+..... .|+..+|+.-+....
T Consensus 52 edAisK~eeAL~I~---P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 52 EDAISKFEEALKIN---PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH--
Confidence 34444444444433 22346777777777776632211111223677788888777764 799999998888764
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 013010 301 YRIERALELFDDMNKKGC 318 (451)
Q Consensus 301 g~~~~a~~~~~~m~~~g~ 318 (451)
+|-++..++.+.+.
T Consensus 125 ----kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 ----KAPELHMEIHKQGL 138 (186)
T ss_dssp ----THHHHHHHHHHSSS
T ss_pred ----hhHHHHHHHHHHHh
Confidence 35566666665543
No 371
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.55 E-value=42 Score=22.49 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 013010 327 SFIRYYSVVNEIDKAIEMMRKMQ 349 (451)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~ 349 (451)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555544
No 372
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=51.35 E-value=94 Score=30.56 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=46.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH----HHHHHHHHHhcC-C
Q 013010 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA----YNVVINALCRVG-N 219 (451)
Q Consensus 145 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g-~ 219 (451)
..++++|++..++..+.+... +. |-+..|.++|+++.++|+.||..| .+..+++|+-.| .
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~--SI-------------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t 271 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPI--SI-------------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYT 271 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCce--EE-------------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCC
Confidence 357788888888777776322 22 445567789999999999997654 444555687777 4
Q ss_pred hHHHHHHHH
Q 013010 220 FNKARFLLE 228 (451)
Q Consensus 220 ~~~a~~~~~ 228 (451)
++++.++..
T Consensus 272 ~ee~~~lr~ 280 (545)
T TIGR01228 272 VEDADKLRQ 280 (545)
T ss_pred HHHHHHHHH
Confidence 666655543
No 373
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=51.18 E-value=1.6e+02 Score=25.20 Aligned_cols=107 Identities=15% Similarity=0.037 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHH-HHHhcC--CHHHHHH
Q 013010 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK--GCIPNRVTYNSFIR-YYSVVN--EIDKAIE 343 (451)
Q Consensus 269 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~-~~~~~g--~~~~A~~ 343 (451)
++++++-.++.. ++.........|++++|.+-++.+.+. .++--...|..+.. +|+..+ .+-+|.-
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Confidence 456666655543 344444556778888888877776543 11112334555554 455554 3567777
Q ss_pred HHHHHHhcCCCCCChh----hHHHHHHHH--------------HHcCCHHHHHHHHHHHHh
Q 013010 344 MMRKMQNLNHGVPTSS----SYTPIIHAL--------------CEAGRVLEARDFLAELVD 386 (451)
Q Consensus 344 ~~~~m~~~~~~~p~~~----~~~~li~~~--------------~~~g~~~~A~~l~~~m~~ 386 (451)
++.-....+. |+.. .+...|.++ .+.|+++.|.++++-|.+
T Consensus 91 l~~~l~~~~~--ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDGRL--PSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcCCC--CCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777766553 3322 222233333 346888999888888864
No 374
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.46 E-value=2.7e+02 Score=27.75 Aligned_cols=100 Identities=9% Similarity=0.051 Sum_probs=55.9
Q ss_pred HHHHHHHHH-HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010 270 EANHLFRLM-LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348 (451)
Q Consensus 270 ~a~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 348 (451)
+..+.+... ...|+..+......++. ...|++..|+.+++++...+ ....|+..+... +
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~-------------l--- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKM-------------I--- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHH-------------h---
Confidence 344444443 34566666666655543 34588888888887755321 111222222111 1
Q ss_pred HhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 013010 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394 (451)
Q Consensus 349 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 394 (451)
| .++...+..++.++...+....|+.++.+|.+.|..|...
T Consensus 244 ---g--~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 244 ---G--YHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred ---C--CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 2 3455556666666655555667777888888777776644
No 375
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=49.60 E-value=1.1e+02 Score=28.18 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH----------cCCHHH
Q 013010 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE----------AGRVLE 376 (451)
Q Consensus 307 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 376 (451)
.++++.|.+.++.|.-..|.-+.-.+.+.=.+.+++.+|+.+.... .-|..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~------~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP------QRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh------hhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 5688888889999999999888888888889999999999887643 237777777765 355555
Q ss_pred HHHHH
Q 013010 377 ARDFL 381 (451)
Q Consensus 377 A~~l~ 381 (451)
.++++
T Consensus 337 nmkLL 341 (370)
T KOG4567|consen 337 NMKLL 341 (370)
T ss_pred HHHHH
Confidence 55554
No 376
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=49.39 E-value=1.7e+02 Score=25.21 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=61.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 013010 295 DGCCKTYRIERALELFDDMNKKGCIPN-----RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369 (451)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 369 (451)
+-+.+.|++++|..-|.+..+. +++. ...|..-..++.+.+.++.|+.-.....+.+ +........-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHH
Confidence 3456789999999988888775 3332 2334444456777888888888888777765 222223333345677
Q ss_pred HcCCHHHHHHHHHHHHhCC
Q 013010 370 EAGRVLEARDFLAELVDGG 388 (451)
Q Consensus 370 ~~g~~~~A~~l~~~m~~~g 388 (451)
+...+++|++=|+.+.+..
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 8888999999888888743
No 377
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=49.08 E-value=2.2e+02 Score=26.21 Aligned_cols=140 Identities=16% Similarity=0.065 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHH-------HHHHc-----------------CCCCCc
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLK-------DMSRR-----------------GNGELV 167 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-------~m~~~-----------------~~~~~~ 167 (451)
-.+|+++|--+..+.|-+ .+=+.++..+....+..+|...+. ++..+ -..+..
T Consensus 149 s~KA~ELFayLv~hkgk~---v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~ 225 (361)
T COG3947 149 SRKALELFAYLVEHKGKE---VTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKY 225 (361)
T ss_pred hhHHHHHHHHHHHhcCCc---ccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccc
Confidence 379999999998764433 344557888888888888877654 22221 012344
Q ss_pred cHHhHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCC-------------HHH----HHHHHHHHHhcCChHHHHHHHHH
Q 013010 168 TTSSVTCLIKVLGE-EGLVNEALATFYRMKQFRCRPD-------------VYA----YNVVINALCRVGNFNKARFLLEQ 229 (451)
Q Consensus 168 ~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~-------------~~~----~~~li~~~~~~g~~~~a~~~~~~ 229 (451)
|..-|-..+..... +..++++.++....+. +.-|+ ..+ .+.....|..+|.+.+|.++-+.
T Consensus 226 Dv~e~es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr 304 (361)
T COG3947 226 DVQEYESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQR 304 (361)
T ss_pred cHHHHHHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 55556666655443 3456777777666543 22221 122 34555678889999999999998
Q ss_pred hhhCCCCCCCCHHHHHHHHHHHHhcCCch
Q 013010 230 MELPGFRCPPDVYTYTILISSYCKYGMQT 258 (451)
Q Consensus 230 m~~~g~~~~p~~~~~~~li~~~~~~g~~~ 258 (451)
..... |.+...+-.++..+...|+--
T Consensus 305 ~ltld---pL~e~~nk~lm~~la~~gD~i 330 (361)
T COG3947 305 ALTLD---PLSEQDNKGLMASLATLGDEI 330 (361)
T ss_pred HhhcC---hhhhHHHHHHHHHHHHhccch
Confidence 88764 468888999999999999533
No 378
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=48.91 E-value=2.2e+02 Score=26.29 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=10.2
Q ss_pred hHHHHHHHHHhcCCHHH
Q 013010 289 AYNCLIDGCCKTYRIER 305 (451)
Q Consensus 289 ~~~~li~~~~~~g~~~~ 305 (451)
+|.-|+.++|..|+.+.
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45556666666666554
No 379
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=48.81 E-value=1.3e+02 Score=23.62 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHH
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 191 (451)
+++++..|.... .+.-|..-...-|.. ++ ..+...++|..|.+++++.. .+.-|......+-..|++.+|.++
T Consensus 49 Lerc~~~f~~~~---~YknD~RyLkiWi~y-a~--~~~dp~~if~~L~~~~IG~~-~AlfYe~~A~~lE~~g~~~~A~~i 121 (125)
T smart00777 49 LERCIRYFEDDE---RYKNDPRYLKIWLKY-AD--NCDEPRELFQFLYSKGIGTK-LALFYEEWAQLLEAAGRYKKADEV 121 (125)
T ss_pred HHHHHHHhhhhh---hhcCCHHHHHHHHHH-HH--hcCCHHHHHHHHHHCCcchh-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456666666554 344444332222221 11 12446677777777776642 233566666666677777777777
Q ss_pred HH
Q 013010 192 FY 193 (451)
Q Consensus 192 ~~ 193 (451)
|+
T Consensus 122 y~ 123 (125)
T smart00777 122 YQ 123 (125)
T ss_pred HH
Confidence 75
No 380
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.30 E-value=3.1e+02 Score=27.81 Aligned_cols=166 Identities=11% Similarity=0.039 Sum_probs=97.8
Q ss_pred hcCHHHHHHHHHHHhhcCCC----------CCCHHhHHHHHHHHHccCChhHHHHHHHHHH-------HcCCC-------
Q 013010 109 TLGLNKATEFYHWVERFFDF----------FHNEMTCKEMGIVFARGNNVKGLWDFLKDMS-------RRGNG------- 164 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~----------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-------~~~~~------- 164 (451)
....++|...|.-....+.. +-.+.+.-.+...+...|+.+.|..++++-. .-.+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34467888888776653111 1123455556667888898888777765432 21111
Q ss_pred ----CCccHHhHHHH---HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHhhhCC-C
Q 013010 165 ----ELVTTSSVTCL---IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC-RVGNFNKARFLLEQMELPG-F 235 (451)
Q Consensus 165 ----~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g-~ 235 (451)
.+.+..-|-+| |..+.+.|.+..|+++-+-+.+....-|......+|+.|+ ++.++.-.+++++..+... +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 11122233222 4566778999999999999988765557888888898886 6778888888888774432 2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHH
Q 013010 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275 (451)
Q Consensus 236 ~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~ 275 (451)
..-|| ..|+..+..+.-.++.+..+......+..|...+
T Consensus 411 ~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 411 SQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred hhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 11244 4566544444444433333333333555555544
No 381
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.30 E-value=2.3e+02 Score=26.40 Aligned_cols=138 Identities=14% Similarity=0.064 Sum_probs=76.6
Q ss_pred CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCC
Q 013010 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ----FRCRP 202 (451)
Q Consensus 127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p 202 (451)
.+..|...+++|..+ +...+++..+..++..+.. +...-...+-....-||+-|+.+.|++.+.+..+ -|.+.
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenl-GE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~ki 141 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENL-GESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKI 141 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch
Confidence 444455555554432 1223444444444444432 1112334566667789999999999998876644 57788
Q ss_pred CHHHHHHHHHHHHhc-CChHHHHHHHHHhhhCCCCCC--CCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010 203 DVYAYNVVINALCRV-GNFNKARFLLEQMELPGFRCP--PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279 (451)
Q Consensus 203 ~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~--p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~ 279 (451)
|+..+.+-+..+.-. .-+.+-.+..+.+.+.|.... --..+|..+-..-.+ ++.+|-.+|-+..
T Consensus 142 DVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR-------------~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 142 DVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVR-------------NFKEAADLFLDSV 208 (393)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHH-------------hHHHHHHHHHHHc
Confidence 888887766654432 223444555555566663200 011344444333333 7888888887665
Q ss_pred h
Q 013010 280 F 280 (451)
Q Consensus 280 ~ 280 (451)
.
T Consensus 209 s 209 (393)
T KOG0687|consen 209 S 209 (393)
T ss_pred c
Confidence 3
No 382
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.27 E-value=2.6e+02 Score=26.95 Aligned_cols=96 Identities=9% Similarity=0.003 Sum_probs=60.0
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC---------CCCCC
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF---------RCRPD 203 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~ 203 (451)
..+.-+..-|..+|+++.|.+.+.+....--........|-.+|..-.-.|+|..+..+..+..+. .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456778888999999999999998854432111223445666677777789998888887777653 12333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHh
Q 013010 204 VYAYNVVINALCRVGNFNKARFLLEQM 230 (451)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~a~~~~~~m 230 (451)
...+..+.+.+. +++..|.+.|-..
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 333444443333 3666666665443
No 383
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.26 E-value=1.8e+02 Score=24.98 Aligned_cols=139 Identities=10% Similarity=0.094 Sum_probs=73.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHH-
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS--FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP- 363 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~--li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~- 363 (451)
...|..++.... .+.. +.......+....-.....++.. +...+...|++++|..-++..... |.-..+..
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l 127 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHH
Confidence 344555555443 2222 44444444544421112222222 334566777788877777766542 22233332
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHHHHHhhc
Q 013010 364 ----IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMK 433 (451)
Q Consensus 364 ----li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 433 (451)
|.+.....|.+|+|+.+++...+.++.+ .....--+.+...|+-+.|..-+.+....+-.+.-.+.+.
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lq 199 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALESDASPAAREILQ 199 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHHHH
Confidence 3344556677788887777766555432 1223335667777777777777777776654444344433
No 384
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.72 E-value=3.1e+02 Score=27.64 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=20.9
Q ss_pred HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315 (451)
Q Consensus 279 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 315 (451)
.+.|+..+......++... .|++..|..+++++..
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia 226 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSIA 226 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHh
Confidence 3456666655555554432 4777777777766544
No 385
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.67 E-value=79 Score=25.54 Aligned_cols=60 Identities=10% Similarity=0.017 Sum_probs=28.4
Q ss_pred HHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 013010 156 KDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (451)
Q Consensus 156 ~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 218 (451)
..+.++|.+..+. =..++..+...++.-.|.++|+++.+.+...+..|.-..++.+...|
T Consensus 10 ~~lk~~glr~T~q---R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ---RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH---HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444455443222 23455555555555556666666665554444444333344444443
No 386
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.58 E-value=2.2e+02 Score=25.81 Aligned_cols=70 Identities=7% Similarity=-0.061 Sum_probs=35.5
Q ss_pred CCCCCHHhHHHHHHHH-HccCChhHHHHHHHHHHHcCC-CCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 013010 127 DFFHNEMTCKEMGIVF-ARGNNVKGLWDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196 (451)
Q Consensus 127 ~~~~~~~~~~~ll~~~-~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 196 (451)
+-.||+..=|..-.+- .+....++|..-|+++.+... +..-.-...-.+|..+.+.|++++..+.|.+|.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3455554433322221 133466677777776665431 211222334455666666666666666666664
No 387
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.86 E-value=1.4e+02 Score=26.70 Aligned_cols=54 Identities=9% Similarity=-0.084 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh----CC-CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 013010 174 CLIKVLGEEGLVNEALATFYRMKQ----FR-CRPDVYAYNVVINALCRVGNFNKARFLL 227 (451)
Q Consensus 174 ~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~ 227 (451)
.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+-
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344445555555555555554421 12 2233344444445555555555544443
No 388
>PRK09687 putative lyase; Provisional
Probab=46.70 E-value=2.3e+02 Score=25.87 Aligned_cols=121 Identities=14% Similarity=0.024 Sum_probs=57.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN-EIDKAIEMMRKMQNLNHGVPTSSSYTPI 364 (451)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~l 364 (451)
+..+--..+.++.+.++ +.+...+-.+.+. +|...-..-+.++.+.+ .-..+...+..+.. -++...-...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHH
Confidence 33444455555555554 3444444444432 23333333444444332 12344444444443 2344555556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 365 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
+.++.+.|+ ..|...+-...+.+. .....+.++..-|+.+ +...+.++.+
T Consensus 213 ~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~~-a~p~L~~l~~ 262 (280)
T PRK09687 213 IIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDKT-LLPVLDTLLY 262 (280)
T ss_pred HHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCHh-HHHHHHHHHh
Confidence 666666666 344444444444322 1234566666666654 5555555554
No 389
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=46.11 E-value=40 Score=17.34 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 013010 172 VTCLIKVLGEEGLVNEALATFYRMK 196 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~m~ 196 (451)
|..+...+...|+++.|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444555555555554443
No 390
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.39 E-value=1.3e+02 Score=26.75 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=27.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc----CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010 328 FIRYYSVVNEIDKAIEMMRKMQNL----NHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384 (451)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 384 (451)
+-.-|.+.|++++|.++|+.+... |...+...+...+..++.+.|+.+....+.-+|
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444555566666666666554321 211233344444455555555555555544433
No 391
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.01 E-value=70 Score=21.76 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=25.8
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013010 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333 (451)
Q Consensus 284 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 333 (451)
.|+...++.++..+++-.-.++++..+.+..+.|. .+..+|.--++.++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 34455556666666665556666666666665553 34445544444443
No 392
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.43 E-value=45 Score=30.51 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 013010 208 NVVINALCRVGNFNKARFLLEQMELPGF 235 (451)
Q Consensus 208 ~~li~~~~~~g~~~~a~~~~~~m~~~g~ 235 (451)
|..|..-.+.||+++|+++++|.++.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445555555555555555555555543
No 393
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=43.84 E-value=3.3e+02 Score=26.91 Aligned_cols=121 Identities=13% Similarity=0.070 Sum_probs=77.6
Q ss_pred HhcCChHHH-HHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 013010 215 CRVGNFNKA-RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL 293 (451)
Q Consensus 215 ~~~g~~~~a-~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 293 (451)
...|++-.| .+++.-++..... |+.....+.| +...| .++.+...+....+. +.....+..++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~--p~~i~l~~~i--~~~lg-----------~ye~~~~~~s~~~~~-~~s~~~~~~~~ 363 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQD--PVLIQLRSVI--FSHLG-----------YYEQAYQDISDVEKI-IGTTDSTLRCR 363 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCC--chhhHHHHHH--HHHhh-----------hHHHHHHHhhchhhh-hcCCchHHHHH
Confidence 345666555 4455555544432 6655544444 34556 777777776655432 33456778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 294 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
+....+.|++++|..+-.-|....++ +......-.-..-..|-+|++.-.|++....+
T Consensus 364 ~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 364 LRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999999999988888877654 34433333333445677899999998887655
No 394
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=43.13 E-value=3.5e+02 Score=27.25 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 013010 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY---NSFIRYYSVVNEIDKAIEMMRKMQNLNH 353 (451)
Q Consensus 290 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~A~~~~~~m~~~~~ 353 (451)
...++.-|.+.+++++|..++..|-=.-. ....| +.+.+.+.+..--++.+..++.+.....
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~--g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ 475 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTM--GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFY 475 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCcccc--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcc
Confidence 34577889999999999999998853211 23344 4455556665545566666666665544
No 395
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=42.98 E-value=4e+02 Score=27.56 Aligned_cols=284 Identities=14% Similarity=0.157 Sum_probs=147.2
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCHH-----hHHHHHHHHHccCChhHHHHHHHHHHHcCCC--CCccHHhHHHH-HHHHHh
Q 013010 110 LGLNKATEFYHWVERFFDFFHNEM-----TCKEMGIVFARGNNVKGLWDFLKDMSRRGNG--ELVTTSSVTCL-IKVLGE 181 (451)
Q Consensus 110 ~~~~~A~~~f~~~~~~~~~~~~~~-----~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~~~l-i~~~~~ 181 (451)
..+++|...+++......- ++.. +-..++..+.+.+... |...+++..+.-.. ...-...|.-+ +..+..
T Consensus 74 ~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~ 151 (608)
T PF10345_consen 74 ENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQ 151 (608)
T ss_pred CCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence 3477888887766432111 2211 2223456666666655 98888886654322 11122333333 333333
Q ss_pred cCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHhhhCCC-------CCCCCHHHHHHHHH
Q 013010 182 EGLVNEALATFYRMKQFR---CRPDVYAYNVVINALC--RVGNFNKARFLLEQMELPGF-------RCPPDVYTYTILIS 249 (451)
Q Consensus 182 ~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~-------~~~p~~~~~~~li~ 249 (451)
.++...|.+.++.+...- ..|-..++-.++.+.. +.+..+++.+.++++..... ..+|-..+|..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 489999999998886632 3445555656666554 34556677777766633211 12467788888888
Q ss_pred HHHh--cCCchhhhHHHHHHHHHHHHHHHHHHhcC----------CC-------------CCHhh---------HHHHHH
Q 013010 250 SYCK--YGMQTGCRKAIRRRIWEANHLFRLMLFKG----------FV-------------PDVVA---------YNCLID 295 (451)
Q Consensus 250 ~~~~--~g~~~~~~~~~~~~~~~a~~~~~~m~~~~----------~~-------------~~~~~---------~~~li~ 295 (451)
.++. .|+++.+.. .+.+..+.+++..... ++ +.... ..-++.
T Consensus 232 l~~~l~~~~~~~~~~----~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS 307 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQ----KLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLS 307 (608)
T ss_pred HHHHHHcCCHHHHHH----HHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHH
Confidence 6654 443333333 3333334444433321 00 11111 122222
Q ss_pred H--HHhcCCHHH-------HHHHHHHHH-hCCCCCC--------HHHHHHHHH---------HHHhcCCHHHHHHHHHHH
Q 013010 296 G--CCKTYRIER-------ALELFDDMN-KKGCIPN--------RVTYNSFIR---------YYSVVNEIDKAIEMMRKM 348 (451)
Q Consensus 296 ~--~~~~g~~~~-------a~~~~~~m~-~~g~~p~--------~~t~~~li~---------~~~~~g~~~~A~~~~~~m 348 (451)
+ ++..+..++ |.+..+... .....|. ...|...+. ..+-.+++..|...+..|
T Consensus 308 ~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~ 387 (608)
T PF10345_consen 308 GLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFM 387 (608)
T ss_pred HHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 2 233444434 444445444 1111111 122222222 223468899999999999
Q ss_pred HhcCCCCCC-----hhhHHHHHHH--HHHcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHH
Q 013010 349 QNLNHGVPT-----SSSYTPIIHA--LCEAGRVLEARDFLA--------ELVDGGSVPREYTYKLV 399 (451)
Q Consensus 349 ~~~~~~~p~-----~~~~~~li~~--~~~~g~~~~A~~l~~--------~m~~~g~~p~~~t~~~l 399 (451)
.+.....|+ ...+...+.| +...|+.+.|...|. .....+...+..++..|
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~L 453 (608)
T PF10345_consen 388 RQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAAL 453 (608)
T ss_pred HHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHH
Confidence 876432222 2334444444 344589999999997 44455666666665553
No 396
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=42.86 E-value=1.3e+02 Score=21.83 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351 (451)
Q Consensus 308 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (451)
++|+-....|+..|...|.+++....-.=-++...++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 67777777777777777877777766666677777777776653
No 397
>PRK09857 putative transposase; Provisional
Probab=42.54 E-value=1.6e+02 Score=27.15 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 013010 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390 (451)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 390 (451)
+..++......++.++..++++.+.+.. ........++..-+...|.-+++.++..+|...|+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~--~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS--PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444444444455555555555444431 122222333444444444444444444444444443
No 398
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=42.52 E-value=4.1e+02 Score=27.56 Aligned_cols=90 Identities=16% Similarity=0.181 Sum_probs=41.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc-
Q 013010 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA- 371 (451)
Q Consensus 293 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~- 371 (451)
....+.-.|+++.|.+.+-. ..+...|.+.+.+.+..|.-.+-.+... ..+.......|...-+..||..|++.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34556678899999888876 2233445666655555443322222211 33332221122236678888888774
Q ss_pred --CCHHHHHHHHHHHHhC
Q 013010 372 --GRVLEARDFLAELVDG 387 (451)
Q Consensus 372 --g~~~~A~~l~~~m~~~ 387 (451)
.+..+|.++|--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 5678888887666544
No 399
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=42.23 E-value=1.5e+02 Score=22.41 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=9.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 013010 328 FIRYYSVVNEIDKAIEMMRKM 348 (451)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m 348 (451)
++..|...+++++|.+.+.++
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 333444444454444444444
No 400
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.98 E-value=66 Score=24.39 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=9.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 013010 328 FIRYYSVVNEIDKAIEMMRKM 348 (451)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m 348 (451)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 333444445555555555443
No 401
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.90 E-value=2.5e+02 Score=29.05 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=76.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCChHH--HHHHHHH-hhhCCCCCCCCHHHHHHHH
Q 013010 174 CLIKVLGEEGLVNEALATFYRMKQF--RCRPDVYAYNVVINALCRVGNFNK--ARFLLEQ-MELPGFRCPPDVYTYTILI 248 (451)
Q Consensus 174 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~--a~~~~~~-m~~~g~~~~p~~~~~~~li 248 (451)
+|+.+|..+|++..+.++++..... |-+.=...||..|+...+.|.++- +.+-..+ +....+ .-|..||..|+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l--n~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL--NGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc--CCcchHHHHHH
Confidence 7899999999999999999988764 333446778888999999998653 3333333 344443 47888888888
Q ss_pred HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 013010 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK--TYRIERALELFDDMN 314 (451)
Q Consensus 249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~ 314 (451)
.+-..-- .-...+-++.+...+ +-|-++..+.. .=.+++..-+.+++.
T Consensus 111 ~~sln~t-----------~~~l~~pvl~~~i~~-------s~ngv~di~~~~~v~s~~ev~limd~l~ 160 (1117)
T COG5108 111 QASLNPT-----------QRQLGLPVLHELIHR-------SANGVIDILMHESVFSPEEVKLIMDQLN 160 (1117)
T ss_pred HhhcChH-----------hHHhccHHHHHHHHh-------hhhhHHHHHhhhccCCHHHHHHHHHhcC
Confidence 7766533 334455556655542 12234443332 234556655555543
No 402
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.88 E-value=55 Score=22.27 Aligned_cols=49 Identities=8% Similarity=0.111 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q 013010 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370 (451)
Q Consensus 320 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 370 (451)
|....++-++..+++-.-.++++..+.+..+.| ..+..+|---++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g--~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG--SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 455566666666666666677777777766666 3455555555555554
No 403
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=40.69 E-value=2.3e+02 Score=24.20 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH-HHHhcCC--HHHHHHHHHHHHhCCCC
Q 013010 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID-GCCKTYR--IERALELFDDMNKKGCI 319 (451)
Q Consensus 243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~--~~~a~~~~~~m~~~g~~ 319 (451)
.++...-.....|+.+.+.. .+++|.+...+++. -...|..+.. ++|..+. +-+|.-++.-+... ..
T Consensus 31 r~s~~aI~~~H~~~~eeA~~----~l~~a~~~v~~Lk~-----~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ 100 (204)
T COG2178 31 RLSGEAIFLLHRGDFEEAEK----KLKKASEAVEKLKR-----LLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RL 100 (204)
T ss_pred HHHHHHHHHHHhccHHHHHH----HHHHHHHHHHHHHH-----HHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CC
Confidence 33444445556664444443 44444444444432 2234555555 6666654 44555555555443 33
Q ss_pred CCHH----HHHHHHHHHH--------------hcCCHHHHHHHHHHHHhc
Q 013010 320 PNRV----TYNSFIRYYS--------------VVNEIDKAIEMMRKMQNL 351 (451)
Q Consensus 320 p~~~----t~~~li~~~~--------------~~g~~~~A~~~~~~m~~~ 351 (451)
|+.. .+-..|.+.+ +.|+++.|.+.++-|.+.
T Consensus 101 ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 101 PSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred CCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4332 1222333322 457788888888777653
No 404
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=40.50 E-value=82 Score=32.21 Aligned_cols=34 Identities=32% Similarity=0.567 Sum_probs=0.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013010 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403 (451)
Q Consensus 370 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 403 (451)
+.|+..+|.+.+-.+...++.|...-...|.++.
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp ----------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 3477778888777777777777776666555543
No 405
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.94 E-value=42 Score=26.64 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=18.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHH
Q 013010 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL 179 (451)
Q Consensus 145 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~ 179 (451)
.|.-..|-.+|..|+++|.+| + .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pP--d--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPP--D--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCC--c--cHHHHHHHh
Confidence 355555666777777776544 2 266666543
No 406
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.91 E-value=66 Score=24.56 Aligned_cols=41 Identities=22% Similarity=0.128 Sum_probs=18.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 013010 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408 (451)
Q Consensus 368 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 408 (451)
+...+..-.|.++++.+.+.+..++..|.-..++.+.+.|-
T Consensus 10 l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 10 LLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33333344444555555444444444443333444444443
No 407
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.41 E-value=3e+02 Score=25.18 Aligned_cols=129 Identities=12% Similarity=0.065 Sum_probs=76.2
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCCH-------HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPDV-------YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~-------~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 283 (451)
.+-..+.+++++|...+.+....|+. .+. .+...+...|.+.|+.......+. ...+.+.... -
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s--~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~----~sre~m~~ft---k 80 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVS--KDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT----SSREAMEDFT---K 80 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCC--hhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH----hhHHHHHHhc---c
Confidence 34456788999999999999998864 443 355668888999996664443221 2222222221 1
Q ss_pred CCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010 284 VPDVVAYNCLIDGCCKT-YRIERALELFDDMNKKGCIPNR-----VTYNSFIRYYSVVNEIDKAIEMMRKM 348 (451)
Q Consensus 284 ~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~~~~~m 348 (451)
+..+....+++..+-.. ..++....+.....+...+-.. ..=.-+|..+.+.|.+.+|+.+.+.+
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 22334455555555433 3456666666555543222111 11245788889999999998876543
No 408
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.82 E-value=5.2e+02 Score=27.36 Aligned_cols=117 Identities=7% Similarity=-0.112 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhhcCCCCC---CHHhHHHHHHHHHccCChhHHHHHHHHHHHcC--------------------------
Q 013010 112 LNKATEFYHWVERFFDFFH---NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-------------------------- 162 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-------------------------- 162 (451)
.++|++.-+... |..| -.......|..+.-.|++++|-...-.|....
T Consensus 372 yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt 448 (846)
T KOG2066|consen 372 YEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPT 448 (846)
T ss_pred HHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCC
Confidence 467776655443 4444 34567777888888888888877766665431
Q ss_pred CCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh---------CCCC-------CCHHHHHHHHHHHHhcCChHHHHHH
Q 013010 163 NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ---------FRCR-------PDVYAYNVVINALCRVGNFNKARFL 226 (451)
Q Consensus 163 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~g~~-------p~~~~~~~li~~~~~~g~~~~a~~~ 226 (451)
.++..+...|..++..+.. .+...-.++..+-.. ...+ -+...-..|...|...+++..|..+
T Consensus 449 ~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ 527 (846)
T KOG2066|consen 449 GPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPI 527 (846)
T ss_pred CCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHH
Confidence 1222345567777777766 222222221111100 0000 1112233466667777777777777
Q ss_pred HHHhhh
Q 013010 227 LEQMEL 232 (451)
Q Consensus 227 ~~~m~~ 232 (451)
+-..++
T Consensus 528 ylklk~ 533 (846)
T KOG2066|consen 528 YLKLQD 533 (846)
T ss_pred HHhccC
Confidence 766553
No 409
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=37.43 E-value=5.3e+02 Score=27.36 Aligned_cols=188 Identities=11% Similarity=0.077 Sum_probs=99.7
Q ss_pred HhhhCC--CCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH--------
Q 013010 229 QMELPG--FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC-------- 298 (451)
Q Consensus 229 ~m~~~g--~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-------- 298 (451)
.+...+ +..-+.......++.++...| +++.|.+++..-.... -+.......++.+.-
T Consensus 418 ~l~~~~~~f~~l~~~~~~~~~l~~LL~~~-----------~f~la~~~~~~~~~~~-l~~~~~~~lvl~~~~e~fd~Asn 485 (715)
T PF08314_consen 418 WLQDWGGVFGCLSKDEIEEIFLEALLSSG-----------RFSLAKSLYEESSSSP-LSSEKVEDLVLKAAWEFFDNASN 485 (715)
T ss_dssp TTS--S-SSTTS-HHHHHHHHHHHHHHTT------------HHHHHHHHHHTT----TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHhcCCcCCCCCHHHHHHHHHHHHHHCC-----------CHHHHHHHHhcCCcCC-CCHHHHHHHHHHHHHHHHhcCCC
Confidence 334445 333355677888899999999 8888888887643221 223344444444432
Q ss_pred ---hcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------CCChhhHHHHHH
Q 013010 299 ---KTYRIERALELFDDMNKK-GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG--------VPTSSSYTPIIH 366 (451)
Q Consensus 299 ---~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~p~~~~~~~li~ 366 (451)
..|.+..|.++++-+... .-.+...-...||.+.....++.- ..+.|.. .+|+ . .||.
T Consensus 486 ~n~~~g~lk~A~~~L~l~~~~~~~~~~~~~~~~Li~a~~~Ls~f~l-------~l~~g~p~~P~~ir~~~dp--l-~LI~ 555 (715)
T PF08314_consen 486 GNRTRGGLKKARECLNLFPPTFPNSPRIQREKDLIKATHALSEFSL-------VLQPGVPFLPVQIRLHSDP--L-SLIS 555 (715)
T ss_dssp --TTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTS------------------HHHHHTTT-T--H-HHHH
T ss_pred CCCCChHHHHHHHHHHhccCcCCccHHHHHHHHHHHHHHHHHhCCe-------ecCCCCCCCCceeeccCCh--H-HHHH
Confidence 235577787777776654 001233344556665554443322 1122210 1221 1 2222
Q ss_pred HHH-Hc----CCHHHHHHHHHHHHhC---------CCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh---------c
Q 013010 367 ALC-EA----GRVLEARDFLAELVDG---------GSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD---------G 423 (451)
Q Consensus 367 ~~~-~~----g~~~~A~~l~~~m~~~---------g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~---------g 423 (451)
-+. .. .+.++-.++...|... ...-...+....|++....++++.|.+...+++.. +
T Consensus 556 ~vLe~np~aY~~~~~ll~l~~~L~~~~~~~~~~~~~~~~~~ri~~~~i~~AL~~~Df~~Ay~~~~~ll~~~~~~~~~~~~ 635 (715)
T PF08314_consen 556 KVLEQNPKAYKQLEKLLDLANNLVLAGSDESSESDDEAAERRILSMCIEAALVEDDFETAYSYCLELLDPPSDASSSSPN 635 (715)
T ss_dssp HHHHHSTTGGG-HHHHHHHHHHHHHH-----TT---SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHhCchhhcCHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcccccccCC
Confidence 222 22 2356666666666544 11122456677789999999999999999998876 7
Q ss_pred hHHHHHHhhchhccc
Q 013010 424 IEYRFRQVMKVKPIM 438 (451)
Q Consensus 424 ~~~~~~~~~~~~~~~ 438 (451)
....|...+.+....
T Consensus 636 ~~~~W~~~~q~Gk~~ 650 (715)
T PF08314_consen 636 DDESWRTCYQVGKYR 650 (715)
T ss_dssp HHHHHHHHHHHHH--
T ss_pred CChHHHHHHHHhCCC
Confidence 888888887765544
No 410
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=36.96 E-value=1.9e+02 Score=22.07 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 013010 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380 (451)
Q Consensus 301 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 380 (451)
...++|..|.+-+...+. .....--+-+..+.+.|++++| +..-.. ...||...|-+|. -.+.|-.+++...
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~--~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQC--HCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTT--S--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhccc--CCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 357788888888877754 2233333445567788888888 222222 2257777776663 4577777777777
Q ss_pred HHHHHhCC
Q 013010 381 LAELVDGG 388 (451)
Q Consensus 381 ~~~m~~~g 388 (451)
+.++..+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 77776554
No 411
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=36.51 E-value=1.2e+02 Score=19.62 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=14.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 013010 366 HALCEAGRVLEARDFLAELVDGGSVPREY 394 (451)
Q Consensus 366 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 394 (451)
-++.+.|++++|.+..+.+.+ +.|+-.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 355666666666666666665 345543
No 412
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=36.28 E-value=1.5e+02 Score=21.61 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=11.3
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 013010 178 VLGEEGLVNEALATFYRMKQ 197 (451)
Q Consensus 178 ~~~~~g~~~~A~~~~~~m~~ 197 (451)
.....|+.++|...+++..+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34445666666666665543
No 413
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=36.23 E-value=5.4e+02 Score=27.13 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=43.9
Q ss_pred HHHHHHHHHH-HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C------------CCHHHHHHHHHHHHh
Q 013010 269 WEANHLFRLM-LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC-I------------PNRVTYNSFIRYYSV 334 (451)
Q Consensus 269 ~~a~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~------------p~~~t~~~li~~~~~ 334 (451)
++....+... .+.|+..+......++... .|++..+..+++++...|- . ++......|+.++.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~- 257 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII- 257 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH-
Confidence 3444444433 3457777777776666544 5888888888877654321 0 11122223333333
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 013010 335 VNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 335 ~g~~~~A~~~~~~m~~~~ 352 (451)
.++...++.+++++...|
T Consensus 258 ~~d~~~al~~l~~L~~~G 275 (709)
T PRK08691 258 NQDGAALLAKAQEMAACA 275 (709)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 255666666666665555
No 414
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.94 E-value=2.9e+02 Score=23.92 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=51.6
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHH
Q 013010 179 LGEEGLVNEALATFYRMKQFRCRPD-----VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYC 252 (451)
Q Consensus 179 ~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~-~~~~~~li~~~~ 252 (451)
+.++|++++|..-|.+..+. +++. ...|..-..++.+.+.++.|..--....+.+ |+ ..+..--..+|.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~----pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN----PTYEKALERRAEAYE 179 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC----chhHHHHHHHHHHHH
Confidence 55678888888888777763 2222 2334444556677777887777776666655 32 122222233455
Q ss_pred hcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFK 281 (451)
Q Consensus 253 ~~g~~~~~~~~~~~~~~~a~~~~~~m~~~ 281 (451)
+.. .+++|+.=|..+.+.
T Consensus 180 k~e-----------k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KME-----------KYEEALEDYKKILES 197 (271)
T ss_pred hhh-----------hHHHHHHHHHHHHHh
Confidence 544 677777777777664
No 415
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.42 E-value=2e+02 Score=21.93 Aligned_cols=86 Identities=12% Similarity=0.097 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (451)
..++|..+.+.+...+. -...+--+-+..+.+.|++++| +.. ......||...|-+|-. .+.|.-+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~--~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLL--PQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHH--HTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHh--cccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 67899999998887653 2223333344567899999999 221 12234688888877654 48899999999999
Q ss_pred HHHhcCCCCCChhhH
Q 013010 347 KMQNLNHGVPTSSSY 361 (451)
Q Consensus 347 ~m~~~~~~~p~~~~~ 361 (451)
++...| .|....|
T Consensus 94 rla~~g--~~~~q~F 106 (116)
T PF09477_consen 94 RLASSG--SPELQAF 106 (116)
T ss_dssp HHCT-S--SHHHHHH
T ss_pred HHHhCC--CHHHHHH
Confidence 888777 4544444
No 416
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=35.41 E-value=4.6e+02 Score=26.03 Aligned_cols=121 Identities=13% Similarity=0.081 Sum_probs=81.7
Q ss_pred HHhcCCHHHH-HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCc
Q 013010 179 LGEEGLVNEA-LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (451)
Q Consensus 179 ~~~~g~~~~A-~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~ 257 (451)
-...|++..| .+++..++...-.|+.....+.| +...|+++.+...+...... +.....+..++++...+.|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~---~~s~~~~~~~~~r~~~~l~-- 371 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI---IGTTDSTLRCRLRSLHGLA-- 371 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh---hcCCchHHHHHHHhhhchh--
Confidence 3345666554 45666666654556666555554 55679999999998877643 2356678899999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316 (451)
Q Consensus 258 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 316 (451)
++++|..+-.-|....+.- ......-...--..|-++++.-.|+++...
T Consensus 372 ---------r~~~a~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 372 ---------RWREALSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred ---------hHHHHHHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 9999999998888765542 222222222234557788888888887654
No 417
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.82 E-value=2.9e+02 Score=23.65 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------CCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 013010 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-------------VPTSSSYTPIIHALCEAGRVLEARDFLA 382 (451)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------~p~~~~~~~li~~~~~~g~~~~A~~l~~ 382 (451)
=-+++..|-+..++.++.++++.|.+..+. .+--..-|.....|.+.|.+|.|+.+++
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 345777888888999999999888765441 2333456777777888888888888876
No 418
>PRK09857 putative transposase; Provisional
Probab=34.34 E-value=3e+02 Score=25.31 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHHH
Q 013010 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRF 428 (451)
Q Consensus 362 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 428 (451)
..++......++.++..++++.+.+. ........-++.+-+.+.|..+.+.++.++|+..|+...+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 34444444556555556666555544 2333334445666666666666667777777777776553
No 419
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=34.02 E-value=5.1e+02 Score=26.14 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=10.3
Q ss_pred CChHHHHHHHHHhhhCC
Q 013010 218 GNFNKARFLLEQMELPG 234 (451)
Q Consensus 218 g~~~~a~~~~~~m~~~g 234 (451)
|+...|+.+++++...|
T Consensus 271 ~d~~~Al~~l~~L~~~g 287 (507)
T PRK06645 271 RETEKAINLINKLYGSS 287 (507)
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 55666666666666555
No 420
>COG5210 GTPase-activating protein [General function prediction only]
Probab=34.02 E-value=4.6e+02 Score=26.33 Aligned_cols=45 Identities=11% Similarity=0.249 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 308 ELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 308 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
+++..+...|+.+...++..++..+...-.++.|.++|+.+--.|
T Consensus 363 ~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg 407 (496)
T COG5210 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEG 407 (496)
T ss_pred HHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 344445555555555555555555555555555555555544443
No 421
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.30 E-value=2.2e+02 Score=23.00 Aligned_cols=43 Identities=7% Similarity=0.052 Sum_probs=22.8
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 309 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
+.+.+++.|++++.. =..++..+.+.++.-.|.++++++.+.+
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~ 50 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEG 50 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhC
Confidence 444555566655433 2234455555555566666666666654
No 422
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.22 E-value=69 Score=24.72 Aligned_cols=48 Identities=23% Similarity=0.133 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCc
Q 013010 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410 (451)
Q Consensus 363 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 410 (451)
.++..+...+..-.|.++++.|.+.|...+..|.-.-++.+.+.|-..
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 455566666666677777877777777777666555567777776443
No 423
>PRK09687 putative lyase; Provisional
Probab=33.16 E-value=3.8e+02 Score=24.46 Aligned_cols=234 Identities=12% Similarity=0.004 Sum_probs=143.1
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH----HHHHHHHHHHhhCCCCCCHH
Q 013010 130 HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV----NEALATFYRMKQFRCRPDVY 205 (451)
Q Consensus 130 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~ 205 (451)
+|.......+.++...|..+ +...+..+.... +...=...+.+++..|+. .++...+..+... .++..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~~-----d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSSK-----NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhCC-----CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 35556666777777776533 444444444432 333445566777777763 5677778777432 46767
Q ss_pred HHHHHHHHHHhcCCh-----HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010 206 AYNVVINALCRVGNF-----NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280 (451)
Q Consensus 206 ~~~~li~~~~~~g~~-----~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~ 280 (451)
+-...+.+++..+.. ..+...+...... ++..+=...+.++++.+ + .++...+-.+.+
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D-----~~~~VR~~a~~aLg~~~-----------~-~~ai~~L~~~L~ 169 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAFD-----KSTNVRFAVAFALSVIN-----------D-EAAIPLLINLLK 169 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhhC-----CCHHHHHHHHHHHhccC-----------C-HHHHHHHHHHhc
Confidence 766667766665431 2333444333322 45556566777777776 3 356666666665
Q ss_pred cCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChh
Q 013010 281 KGFVPDVVAYNCLIDGCCKTY-RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359 (451)
Q Consensus 281 ~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 359 (451)
. +|..+-...+.++.+.+ ....+...+..+... ++..+-..-+.++.+.|+. .|...+-+..+.+.
T Consensus 170 d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~------ 236 (280)
T PRK09687 170 D---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT------ 236 (280)
T ss_pred C---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc------
Confidence 3 45555555666666543 234566666666643 5777788888899999884 56666666665432
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013010 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404 (451)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 404 (451)
.....+.++...|.. +|...+..+.+.. ||...-...+.+|.
T Consensus 237 ~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 237 VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 234677888898885 6888888887632 47666666666664
No 424
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=32.95 E-value=4.9e+02 Score=25.61 Aligned_cols=77 Identities=12% Similarity=0.191 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013010 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404 (451)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 404 (451)
...|+.-|...|++.+|.+.++++---. .-....+.+++.+.-+.|+-...+.++++.-..|+. |-+.+-++|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPf--FhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~ 585 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPF--FHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCc--chHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhh
Confidence 4668889999999999999998863221 234567889999999999988888888888777654 5666677776
Q ss_pred hcC
Q 013010 405 AAE 407 (451)
Q Consensus 405 ~~g 407 (451)
+-.
T Consensus 586 RV~ 588 (645)
T KOG0403|consen 586 RVY 588 (645)
T ss_pred hhh
Confidence 654
No 425
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=32.50 E-value=1.6e+02 Score=19.79 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=24.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHH
Q 013010 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY-----SVVNEIDKAIEM 344 (451)
Q Consensus 297 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~-----~~~g~~~~A~~~ 344 (451)
+.+.|++-+|-++++++-..--.|....+..||+.. .+.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345566666766666665432223444555555543 234555555554
No 426
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.38 E-value=4.6e+02 Score=25.20 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCHh--hHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 013010 267 RIWEANHLFRLMLFKGFVPDVV--AYNCLIDGCC--KTYRIERALELFDDMNKK 316 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 316 (451)
++..|.++|..+..+ ++++.. .|..+..+|. ..-++++|.+.++.....
T Consensus 146 ~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 146 DYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred CHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 899999999999987 555554 4455555554 456788999999887665
No 427
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=31.94 E-value=4.2e+02 Score=24.58 Aligned_cols=22 Identities=5% Similarity=0.148 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH
Q 013010 322 RVTYNSFIRYYSVVNEIDKAIE 343 (451)
Q Consensus 322 ~~t~~~li~~~~~~g~~~~A~~ 343 (451)
..+|.-|+.++|..|+.+..+-
T Consensus 321 lK~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHHH
Confidence 4467778888888887765543
No 428
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.65 E-value=2.7e+02 Score=25.81 Aligned_cols=71 Identities=10% Similarity=0.250 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------cCCHHH
Q 013010 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV----------VNEIDK 340 (451)
Q Consensus 271 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----------~g~~~~ 340 (451)
-.++++.|.+.++.|.-.+|.-+.-.+.+.=.+.++..+|+.+.... .-|..|+..||. .|++..
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 35788889999999999998888888888888999999999988753 337777777664 366666
Q ss_pred HHHHHH
Q 013010 341 AIEMMR 346 (451)
Q Consensus 341 A~~~~~ 346 (451)
..++++
T Consensus 337 nmkLLQ 342 (370)
T KOG4567|consen 337 NMKLLQ 342 (370)
T ss_pred HHHHHh
Confidence 555553
No 429
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.27 E-value=4.2e+02 Score=24.38 Aligned_cols=148 Identities=9% Similarity=0.001 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhcCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010 267 RIWEANHLFRLMLFKGF----VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 342 (451)
-.++|.+.|......+. ..+...-..++....+.|..+....+++..... ++...-..++.+.+...+.+...
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHH
Confidence 56789999998887422 345556666777777888866655666655544 46788889999999999999999
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHcCC--HHHHHHHHH----HHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHH
Q 013010 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGR--VLEARDFLA----ELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGL 416 (451)
Q Consensus 343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~----~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 416 (451)
++++....... .++.. ...++.++...+. .+.+.+++. .+. ..+..+..+...++..+...-..+.-.+.+
T Consensus 222 ~~l~~~l~~~~-v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 298 (324)
T PF11838_consen 222 RLLDLLLSNDK-VRSQD-IRYVLAGLASSNPVGRDLAWEFFKENWDAII-KKFGTNSSALSRVIKSFAGNFSTEEQLDEL 298 (324)
T ss_dssp HHHHHHHCTST-S-TTT-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHH-CHC-TTSHCCHHHHHCCCTT--SHHHHHHH
T ss_pred HHHHHHcCCcc-cccHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHhccCCCHHHHHHH
Confidence 99999988542 23333 4445556653443 366666654 333 223333335555555544433344344455
Q ss_pred HHHH
Q 013010 417 RKRI 420 (451)
Q Consensus 417 ~~~~ 420 (451)
+++.
T Consensus 299 ~~f~ 302 (324)
T PF11838_consen 299 EEFF 302 (324)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 430
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.84 E-value=2.1e+02 Score=20.65 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCch
Q 013010 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411 (451)
Q Consensus 343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 411 (451)
.+++.+.+.|+ .+......+ -+...+.+.|.++++.+...| ...|..+.+|+...|....
T Consensus 20 ~v~~~L~~~~V--lt~~~~e~I---~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 20 YLWDHLLSRGV--FTPDMIEEI---QAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHHhcCC--CCHHHHHHH---HcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHH
Confidence 45555555553 222222222 223344666777776666654 2366667777766665543
No 431
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.62 E-value=2e+02 Score=22.11 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=16.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 328 FIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
+|..+.++...++|+++++-|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3445556666677777777777666
No 432
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=30.53 E-value=64 Score=22.53 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=25.6
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 013010 370 EAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE 407 (451)
Q Consensus 370 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 407 (451)
-.|+.+.+.+++++..+.|+.|.......+..++.+-|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45777788888888887787777766665655554433
No 433
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=30.37 E-value=5.8e+02 Score=25.72 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=24.0
Q ss_pred HHHHHHHH-HHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010 270 EANHLFRL-MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314 (451)
Q Consensus 270 ~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 314 (451)
+....+.. +.+.|+..+......++. ...|++..|...++.+.
T Consensus 191 el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai 234 (507)
T PRK06645 191 EIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAA 234 (507)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 34444433 334566666555555554 23477777777777664
No 434
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=30.36 E-value=3.8e+02 Score=23.58 Aligned_cols=100 Identities=18% Similarity=0.135 Sum_probs=64.5
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 013010 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP---NRVTYN--SFIRYYSVVNEIDKAIEMMRKMQNLNHGVP 356 (451)
Q Consensus 282 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 356 (451)
.+.++..-+|.|+--|.-...+.+|-+.|.. +.|+.| |..+++ .-|......|++++|++..+.....-. .-
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiL-d~ 97 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEIL-DT 97 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHH-cc
Confidence 3456667778888878777777777777754 445554 455553 467778999999999999988654322 22
Q ss_pred ChhhHHHH----HHHHHHcCCHHHHHHHHHHH
Q 013010 357 TSSSYTPI----IHALCEAGRVLEARDFLAEL 384 (451)
Q Consensus 357 ~~~~~~~l----i~~~~~~g~~~~A~~l~~~m 384 (451)
|...+-.| +--+.+.|..++|+++.+.=
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 32222211 11246778888888887643
No 435
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=30.17 E-value=4.2e+02 Score=24.00 Aligned_cols=153 Identities=14% Similarity=0.072 Sum_probs=78.3
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh----
Q 013010 110 LGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFAR----GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE---- 181 (451)
Q Consensus 110 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~---- 181 (451)
.+..+|.+.+...... + +......+...|.. ..+...|.+++....+.|. ......|-..|..
T Consensus 55 ~~~~~a~~~~~~a~~~-~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~-----~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 55 PDYAKALKSYEKAAEL-G---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL-----AEALFNLGLMYANGRGV 125 (292)
T ss_pred ccHHHHHHHHHHhhhc-C---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc-----HHHHHhHHHHHhcCCCc
Confidence 3467777777776642 1 11333334444432 3356778888876666652 2233344444444
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-------ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc
Q 013010 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-------NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY 254 (451)
Q Consensus 182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~ 254 (451)
..+..+|..+|+...+.|..+-..+...+-..|.... +...|...|.+....+ +......+-..|..-
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-----~~~a~~~lg~~y~~G 200 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-----NPDAQLLLGRMYEKG 200 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-----CHHHHHHHHHHHHcC
Confidence 3477777777777777765433222333333333321 1225666666666665 223333333333322
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcCC
Q 013010 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGF 283 (451)
Q Consensus 255 g~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 283 (451)
. ++. .+..+|...|...-+.|.
T Consensus 201 ~---Gv~----~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 201 L---GVP----RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred C---CCC----cCHHHHHHHHHHHHHCCC
Confidence 1 011 166667677766666553
No 436
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.08 E-value=6.5e+02 Score=26.16 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=21.5
Q ss_pred HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315 (451)
Q Consensus 279 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 315 (451)
.+.|+..+......++. ...|++..+..++++...
T Consensus 197 ~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia 231 (618)
T PRK14951 197 AAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIA 231 (618)
T ss_pred HHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHH
Confidence 44566666666655554 334777777777765543
No 437
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=29.14 E-value=3.2e+02 Score=25.65 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=22.2
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 013010 191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (451)
Q Consensus 191 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 231 (451)
+-.+..+.|+..+..+...++..+. |+...+..-++.+.
T Consensus 149 i~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~ 187 (334)
T COG1466 149 IKKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLA 187 (334)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHH
Confidence 3345555666666666666665544 55555555555543
No 438
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=29.08 E-value=2.7e+02 Score=21.43 Aligned_cols=107 Identities=11% Similarity=0.095 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348 (451)
Q Consensus 269 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 348 (451)
+.+..++..+.+.|.--|..-....+......+.+ -...+-.++...|+.++ +....+. .....+.|.+++..-
T Consensus 9 e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~-G~~~I~~~L~~kGi~~~--~i~~~l~---~~~~~e~a~~~~~kk 82 (121)
T PF02631_consen 9 EAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGK-GPRRIRQKLKQKGIDRE--IIEEALE---EYDEEEEALELAEKK 82 (121)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHTT--HH--HHHHHHT---CS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccc-cHHHHHHHHHHHCCChH--HHHHHHH---HhhHHHHHHHHHHHH
Confidence 45666777777777766655556666666653322 23456677777776533 2222222 223344466666554
Q ss_pred HhcCCCCCChhhHHHHHHHHHHcC-CHHHHHHHH
Q 013010 349 QNLNHGVPTSSSYTPIIHALCEAG-RVLEARDFL 381 (451)
Q Consensus 349 ~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~ 381 (451)
.......++.....-++..+.+.| .++.+..++
T Consensus 83 ~~~~~~~~~~~~~~K~~~~L~rrGF~~~~i~~vi 116 (121)
T PF02631_consen 83 YRRYRKPSDRKRKQKLIRFLMRRGFSYDVIRRVI 116 (121)
T ss_dssp HHHTTTS-CHHHHHHHHHHHHHTT--HHHHHHHC
T ss_pred HhcccCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 444322456666666666666666 234444443
No 439
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=29.06 E-value=2.9e+02 Score=21.74 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 013010 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382 (451)
Q Consensus 339 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 382 (451)
++..++|..|...+++.--+..|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33566677777776655555566666666666777777776664
No 440
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=29.04 E-value=1.8e+02 Score=25.27 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384 (451)
Q Consensus 342 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 384 (451)
.++++-..+.|..+.=++.|+.+|+--.-.-+.++..+++..+
T Consensus 192 ~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 192 EEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred HHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHh
Confidence 3333334444443333445555554433344455555555444
No 441
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.84 E-value=7.6e+02 Score=26.23 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010 327 SFIRYYSVVNEIDKAIEMMRKMQNL 351 (451)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~~ 351 (451)
.|..-|...+++.+|+.++-..+..
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccCh
Confidence 3888888999999999988776543
No 442
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.77 E-value=4.4e+02 Score=23.50 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=51.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------CCCChhhHHHHHH
Q 013010 298 CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH-----------GVPTSSSYTPIIH 366 (451)
Q Consensus 298 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~~p~~~~~~~li~ 366 (451)
.+..+.+--.++.+-.+..++.-+.....+++ +...|+...|+.-++.-..... ..|.+.....++.
T Consensus 170 sklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~ 247 (333)
T KOG0991|consen 170 SKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ 247 (333)
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH
Confidence 33333333333444344445544444444444 2345666666655554322110 1566777777766
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 013010 367 ALCEAGRVLEARDFLAELVDGGSVPREY 394 (451)
Q Consensus 367 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 394 (451)
.| ..+++++|.+++.++-+.|+.|...
T Consensus 248 ~~-~~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 248 AC-LKRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred HH-HhccHHHHHHHHHHHHHcCCCHHHH
Confidence 55 4467888888888888888877643
No 443
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.45 E-value=2.7e+02 Score=23.16 Aligned_cols=38 Identities=8% Similarity=-0.046 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 013010 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN 219 (451)
Q Consensus 182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 219 (451)
.++.-.|.++++.+.+.+...+..|.--.|..+...|-
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 33444455555555554444444443333444444443
No 444
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.38 E-value=5.6e+02 Score=24.61 Aligned_cols=57 Identities=12% Similarity=-0.030 Sum_probs=42.6
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh--cCCHHHHHHHHHHHhhC
Q 013010 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE--EGLVNEALATFYRMKQF 198 (451)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 198 (451)
.+.+.+++..|.++++.+..+ ++.......+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445789999999999999987 4432223456677777765 57788999999988764
No 445
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.06 E-value=3.9e+02 Score=22.71 Aligned_cols=68 Identities=13% Similarity=0.277 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCCCCC--hhhH-----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Q 013010 338 IDKAIEMMRKMQNLNHGVPT--SSSY-----TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409 (451)
Q Consensus 338 ~~~A~~~~~~m~~~~~~~p~--~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 409 (451)
++.|+.+|+.+.+... .|. ...- ...+-.|.+.|.+++|.+++++..+ .|+......-+....+..+.
T Consensus 85 LESAl~v~~~I~~E~~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 85 LESALMVLESIEKEFS-LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccc
Confidence 5678888888877543 331 1111 2334568889999999999999886 45666667777777777664
No 446
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.01 E-value=3.1e+02 Score=22.75 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=39.3
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHH
Q 013010 311 DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVL 375 (451)
Q Consensus 311 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 375 (451)
+.+.+.|++++..-. .++..+...++.-.|.++++.+.+.+. ..+..|--..|+.+...|-+.
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~-~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEP-QAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCC-CCCcchHHHHHHHHHHCCCEE
Confidence 335566777665444 344444445566678888888887775 455555555557777777554
No 447
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.99 E-value=5.4e+02 Score=24.30 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 013010 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215 (451)
Q Consensus 147 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 215 (451)
--+++..+++++...-....--+.=|-++.+.....|.++.++.+|++....|-.|-...-.++++.+-
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 445677777776665322111234467777778888888888888888888888887776666666654
No 448
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.88 E-value=1.4e+02 Score=22.77 Aligned_cols=36 Identities=11% Similarity=0.005 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 013010 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (451)
Q Consensus 183 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 218 (451)
+..-.|.++++.+.+.+...+..|.-..|+.+...|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333444455555554443344444333344444444
No 449
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.79 E-value=6.5e+02 Score=25.38 Aligned_cols=47 Identities=2% Similarity=-0.129 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHH
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSR 160 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 160 (451)
.++..+.+....+..|+..+......++... .|+...|...++.+..
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh
Confidence 3444444444443345555555444444332 3566666655555443
No 450
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.32 E-value=6.9e+02 Score=25.23 Aligned_cols=32 Identities=6% Similarity=0.054 Sum_probs=14.9
Q ss_pred CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHH
Q 013010 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSR 160 (451)
Q Consensus 127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 160 (451)
|+..+......++... .|+...|..++++...
T Consensus 195 gi~~~~~al~~ia~~s--~GslR~al~lLdq~ia 226 (509)
T PRK14958 195 NVEFENAALDLLARAA--NGSVRDALSLLDQSIA 226 (509)
T ss_pred CCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHh
Confidence 4444444444333321 3555556555555443
No 451
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=26.06 E-value=1.4e+02 Score=23.87 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=30.5
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013010 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA 402 (451)
Q Consensus 356 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 402 (451)
+-..|...++. +.+.|-+.+...++++|+++|+..+..+|+-++.-
T Consensus 108 ~V~GtlGvL~~-ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 108 KVTGTLGVLAL-AKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred eeeehhHHHHH-HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 33445554443 34556777777888888888888888887766543
No 452
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=25.61 E-value=1.1e+02 Score=29.88 Aligned_cols=186 Identities=13% Similarity=0.114 Sum_probs=95.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCC---CCHHHHHHHHHHH--
Q 013010 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF------RCR---PDVYAYNVVINAL-- 214 (451)
Q Consensus 146 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~---p~~~~~~~li~~~-- 214 (451)
..+++-.++++.+.+.|.. | ....-++.|.+.++++.|.+..++-.+. |++ .....+..|+.+.
T Consensus 25 ~~~~e~~~~l~~l~~~g~~---d--vl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~~~~ 99 (428)
T cd00245 25 PLLEEHIELLRTLQEEGAA---D--VLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEGVDF 99 (428)
T ss_pred CCHHHHHHHHHHHHhcCCC---C--eeccccccchhhhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHhCCC
Confidence 4556666666666666521 1 2345566677777777777776665422 221 1222333333322
Q ss_pred ---HhcCChHHHHHHHHHhhhCCCCC-CCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010 215 ---CRVGNFNKARFLLEQMELPGFRC-PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290 (451)
Q Consensus 215 ---~~~g~~~~a~~~~~~m~~~g~~~-~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 290 (451)
.|.| -..+..+++-+...|+.- .-...+|+. -|.+.-..+++.+ .++.+.++.....+.|++.+..+|
T Consensus 100 PlqvRhG-t~d~~~l~e~~~a~g~~a~egg~isy~~---py~k~~~Le~si~----~wqy~~rl~~~y~e~gv~in~E~f 171 (428)
T cd00245 100 PVQVRHG-TPDARLLAEIAIASGFDATEGGPISYNL---PYSKNVPLEKSIE----NWQYCDRLVGFYEENGVPINREPF 171 (428)
T ss_pred CEeeccC-CccHHHHHHHHHHhCcccccccceeecc---ccCCCCCHHHHHH----HHHHHHHHHHHHHhcCceecccCC
Confidence 1112 123455555555554320 001122322 1222221111111 555555566666678888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHh
Q 013010 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE-------IDKAIEMMRKMQN 350 (451)
Q Consensus 291 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-------~~~A~~~~~~m~~ 350 (451)
.-+...++- .-+..|..+++.+...|...+..++ .|...++ +..+.++|.++.+
T Consensus 172 g~l~~~l~p-ptla~aiaylea~la~glgV~~lS~-----~f~~~~n~~qDIAk~RA~RrL~a~~l~ 232 (428)
T cd00245 172 GPLTGTLVP-PSILIAIQILEALLAAEQGVKSISV-----GYAQQGNLTQDIAALRALRELAKEYLP 232 (428)
T ss_pred cCcccCcCC-cHHHHHHHHHHHHHHccCCCCEEEE-----EeecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 775533332 3467888899988888766655222 2334444 4457777877666
No 453
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=25.47 E-value=5.6e+02 Score=23.90 Aligned_cols=126 Identities=9% Similarity=-0.106 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC---Cchhhh
Q 013010 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG---MQTGCR 261 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g---~~~~~~ 261 (451)
.+.-+.+|++..+.+ +-+....-.+|..+.+..+.+...+-++++..... -+...|...|+...... .++.+.
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~---~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP---GSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHHhccCcHHHHH
Confidence 355566777766653 34566667777777777777777777888777642 25566666666554421 112222
Q ss_pred HHHHHHHHHHHHHHHHHHhcC---CCCCHhh-------HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 013010 262 KAIRRRIWEANHLFRLMLFKG---FVPDVVA-------YNCLIDGCCKTYRIERALELFDDMNKKGC 318 (451)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~~---~~~~~~~-------~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 318 (451)
. .+.++++.+....... ..+...+ |.-+...+..+|..+.|..+++.+.+.++
T Consensus 123 ~----~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 123 D----VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred H----HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 1 3344444444433321 0111112 22233334578999999999999888765
No 454
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=25.20 E-value=5.9e+02 Score=24.09 Aligned_cols=65 Identities=12% Similarity=0.219 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010 338 IDKAIEMMRKMQNLNHGVPTS----SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405 (451)
Q Consensus 338 ~~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 405 (451)
.+++..+++++.+. .|++ .-|-++.+.....|.+++++.+|++.+..|-.|-...-.++++.+..
T Consensus 119 ~eei~~~L~~li~~---IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~ 187 (353)
T PF15297_consen 119 KEEILATLSDLIKN---IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKM 187 (353)
T ss_pred HHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 34566666666653 3554 35667777777788888888888888888888877777777666653
No 455
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.53 E-value=5.9e+02 Score=23.90 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCC---CCChh
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMN----KKGCIPNRVTYNSFIRY-YSVVNEIDKAIEMMRKMQNLNHG---VPTSS 359 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~t~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~---~p~~~ 359 (451)
...-....-||+.|+.+.|.+.+.... ..|.+.|...+.+=+.. |....-+.+-++..+.+.+.|.. .--..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 344455677999999999998887654 34777777666544433 34444456666666666666652 12234
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 360 SYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
+|..+- |....++.+|..+|-+-..
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 555543 3345678888888876653
No 456
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=24.34 E-value=9.8e+02 Score=26.38 Aligned_cols=196 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHH-HcCCCCCccHHhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHHHHH-----
Q 013010 137 EMGIVFARGNNVKGLWDFLKDMS-RRGNGELVTTSSVTCLIKVLGEE-GLVNEALATFYRMKQFRCRPDVYAYNV----- 209 (451)
Q Consensus 137 ~ll~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~----- 209 (451)
..+..+...+++.+|..+.+.-. ..++-.+.+...|-.=+..+.+. ++.+---.++..+.+.++.-+.+.-..
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~~~~~~~ 778 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDTYPPSSE 778 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccccccccc
Q ss_pred -----HHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC
Q 013010 210 -----VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284 (451)
Q Consensus 210 -----li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 284 (451)
-.......++++..-+.+.+....... ...-...+|.+|++.+.+ ++++|+.+..++.+.
T Consensus 779 ~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~---~~~~l~~IlTa~vkk~Pp---------~le~aL~~I~~l~~~--- 843 (928)
T PF04762_consen 779 AQPNSNSSTASSESKVNKICDAIRKALEKPKD---KDKYLQPILTAYVKKSPP---------DLEEALQLIKELREE--- 843 (928)
T ss_pred cccccccCCCccccHHHHHHHHHHHHhccccc---chhhHHHHHHHHHhcCch---------hHHHHHHHHHHHHhc---
Q ss_pred CCHhhHHHHHHHHHhcCC----HHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhc-------------CCHHHHHH
Q 013010 285 PDVVAYNCLIDGCCKTYR----IERALELFDD----MNKKGCIPNRVTYNSFIRYYSVV-------------NEIDKAIE 343 (451)
Q Consensus 285 ~~~~~~~~li~~~~~~g~----~~~a~~~~~~----m~~~g~~p~~~t~~~li~~~~~~-------------g~~~~A~~ 343 (451)
+...-...+...|-.-+ ++.|+.+|+- |....-.-|+.-|--+++.+-+. +++++|++
T Consensus 844 -~~~~ae~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~ 922 (928)
T PF04762_consen 844 -DPESAEEALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALR 922 (928)
T ss_pred -ChHHHHHHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHH
Q ss_pred HHHHH
Q 013010 344 MMRKM 348 (451)
Q Consensus 344 ~~~~m 348 (451)
-+.++
T Consensus 923 ~L~~~ 927 (928)
T PF04762_consen 923 HLSAC 927 (928)
T ss_pred HHHhh
No 457
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.22 E-value=8.2e+02 Score=25.43 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcc------------HHhHHHHHHHH
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVT------------TSSVTCLIKVL 179 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~~~li~~~ 179 (451)
.++..+.+.......|+..+......++.. ..|+...+..++++....+.. ..+ ......++.++
T Consensus 185 ~eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~-~It~~~V~~~Lg~~~~~~i~~LldaL 261 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSG-QLQEAAVRQMLGSVDRSHVFRLIDAL 261 (618)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCC-CcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344444444444444666666655555542 347777777777655443311 111 11222233333
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC
Q 013010 180 GEEGLVNEALATFYRMKQFRCRP 202 (451)
Q Consensus 180 ~~~g~~~~A~~~~~~m~~~g~~p 202 (451)
. .|+...++.+++++.+.|..+
T Consensus 262 ~-~~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 262 A-QGDGRTVVETADELRLNGLSA 283 (618)
T ss_pred H-cCCHHHHHHHHHHHHHcCCCH
Confidence 2 356666666666666655443
No 458
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.11 E-value=7.3e+02 Score=24.79 Aligned_cols=159 Identities=17% Similarity=0.234 Sum_probs=86.9
Q ss_pred hcCCHHHHHHHHHHHhhCCC-CCC-------HHHHHHHHHHHH-hcCChHHHHHHHHHhhhCCCCCCCCHHHH--HHHHH
Q 013010 181 EEGLVNEALATFYRMKQFRC-RPD-------VYAYNVVINALC-RVGNFNKARFLLEQMELPGFRCPPDVYTY--TILIS 249 (451)
Q Consensus 181 ~~g~~~~A~~~~~~m~~~g~-~p~-------~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~p~~~~~--~~li~ 249 (451)
-.|+..+|++-...|++.-. .|. ......++..|| ..+.++.|+.-|....+.-.. -|...+ ..+..
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~--~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES--IDLQAFCNLNLAI 412 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH--HHHHHHHHHhHHH
Confidence 47999999999999987421 222 222345555554 568899999998877655422 344333 34556
Q ss_pred HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHH------H--HHHH--HhcCCHHHHHHHHHHHHhCCCC
Q 013010 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC------L--IDGC--CKTYRIERALELFDDMNKKGCI 319 (451)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~------l--i~~~--~~~g~~~~a~~~~~~m~~~g~~ 319 (451)
.|.+.| +.+.-.++++.+ | +++..++.. + +.++ ...+++.+|...+.+-.+..
T Consensus 413 ~YL~~~-----------~~ed~y~~ld~i---~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-- 475 (629)
T KOG2300|consen 413 SYLRIG-----------DAEDLYKALDLI---G-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-- 475 (629)
T ss_pred HHHHhc-----------cHHHHHHHHHhc---C-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--
Confidence 777777 333333333322 2 233333322 1 1221 36789999999888766542
Q ss_pred CCHHHHHHH-------H-HHHHhcCCHHHHHHHHHHHHhcCCCCCChh
Q 013010 320 PNRVTYNSF-------I-RYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359 (451)
Q Consensus 320 p~~~t~~~l-------i-~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 359 (451)
+..-++.| + ..+...|+..++.++..-..+.....||..
T Consensus 476 -naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 476 -NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred -chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 22222222 2 233445777777766654333222246654
No 459
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.00 E-value=1.1e+02 Score=17.41 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHH
Q 013010 185 VNEALATFYRMKQFRCRPDVYAYN 208 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~~~~~~ 208 (451)
++.|..+|+.... +.|++.+|-
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4556666666555 345555543
No 460
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=23.82 E-value=2.9e+02 Score=20.07 Aligned_cols=21 Identities=5% Similarity=0.135 Sum_probs=12.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 013010 330 RYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~m~~ 350 (451)
......|+.++|...+++..+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334455677777666666554
No 461
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=23.47 E-value=5.3e+02 Score=22.90 Aligned_cols=165 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-
Q 013010 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY- 301 (451)
Q Consensus 223 a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g- 301 (451)
+.+.|.++.+. +. .|......-+.-+......++ .+.+.-.++..-.+.|+..+...=.-++-++...+
T Consensus 33 v~k~f~~a~~~-i~--vd~~~i~~a~~wL~~~Q~~dG-------~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~ 102 (246)
T PF07678_consen 33 VVKVFSQAKKY-IF--VDENVICRAVKWLISQQQPDG-------SFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGS 102 (246)
T ss_dssp HHHHHHHHTTT-S---CEHHHHHHHHHHHHHHBETTS-------EB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHC
T ss_pred HHHHHHHHHHh-hc--CCHHHHHHHHHHHHHhhcCCC-------ccccCCCccccccCCCCCCCeeehHHHHHHHHhhhh
Q ss_pred -----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------------
Q 013010 302 -----------RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV--------------- 355 (451)
Q Consensus 302 -----------~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--------------- 355 (451)
-+++|...++.-... ..+..+-..+-.++...|+-..+..+++.+.......
T Consensus 103 ~~~~~~~~~~~~i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~ 180 (246)
T PF07678_consen 103 LCDSEKPEYENAINKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSS 180 (246)
T ss_dssp CHTTTHHCHHHHHHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSS
T ss_pred hccccchhhHHHHHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccc
Q ss_pred ---------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHH
Q 013010 356 ---------PTSSSYTPIIHALCEAGRVLEARDFLAELVDG-----GSVPREYTYKLV 399 (451)
Q Consensus 356 ---------p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~~t~~~l 399 (451)
.++.+=.-.+-++.+.++.+.|..+.+-+.+. |+.-+..|.-+|
T Consensus 181 ~~~~~~~~s~~vEtTaYaLLa~l~~~~~~~~~~iv~WL~~qr~~~Ggf~STQdTvvaL 238 (246)
T PF07678_consen 181 SSPWSRGSSLDVETTAYALLALLKRGDLEEASPIVRWLISQRNSGGGFGSTQDTVVAL 238 (246)
T ss_dssp SSTTT-SHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHCTTTTSSTSSHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCCCccCcHHHHHHHH
No 462
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=23.43 E-value=9.6e+02 Score=25.92 Aligned_cols=196 Identities=12% Similarity=0.026 Sum_probs=101.8
Q ss_pred HhcCChHHHHHHHHHhhhCCCC--CCCCH---HHHHHHHHHH-HhcCCchhhhHHHHHHHHHHHHHHHHHHh----cCCC
Q 013010 215 CRVGNFNKARFLLEQMELPGFR--CPPDV---YTYTILISSY-CKYGMQTGCRKAIRRRIWEANHLFRLMLF----KGFV 284 (451)
Q Consensus 215 ~~~g~~~~a~~~~~~m~~~g~~--~~p~~---~~~~~li~~~-~~~g~~~~~~~~~~~~~~~a~~~~~~m~~----~~~~ 284 (451)
....++++|..+..+....-.. +.+.. ..++.+-... ...| +.+.|.++-+.... .-..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~-----------~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRG-----------DPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhcccccch
Confidence 3467899999998887654211 01111 1233332222 2223 56666666655543 2334
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHH--HHHhcCCH--HHHHHHHHHHHhcCC----
Q 013010 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTY---NSFIR--YYSVVNEI--DKAIEMMRKMQNLNH---- 353 (451)
Q Consensus 285 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~---~~li~--~~~~~g~~--~~A~~~~~~m~~~~~---- 353 (451)
+....+.++..+..-.|++++|..+..+..+..-.-+...| ..+.. .+-..|+. .+....|........
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45667778888888899999999998877655322333333 33322 23445632 233333333332211
Q ss_pred -CCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 354 -GVPTSSSYTPIIHALCEA-GRVLEARDFLAELVDGGSVPREYTY--KLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 354 -~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
..+-..++..++.++.+. +...+|..-+.--......|-..-+ ..|.+.....|+.+.|...+.++..
T Consensus 575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 575 RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 122334555555555552 1122222222222222222222222 3677888888999988888887764
No 463
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=23.40 E-value=1.3e+02 Score=15.91 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHh
Q 013010 338 IDKAIEMMRKMQN 350 (451)
Q Consensus 338 ~~~A~~~~~~m~~ 350 (451)
.+.|..+|+.+..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 464
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=23.34 E-value=3e+02 Score=23.96 Aligned_cols=51 Identities=22% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCCCCC----HHhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 013010 112 LNKATEFYHWVERFFDFFHN----EMTCKEMGIVFARGNNVKGLWDFLKDMSRRG 162 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 162 (451)
+.+|++.|+..-.....+.. ....-.+.....+.|+.++|.+.|..+...+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
No 465
>PRK10941 hypothetical protein; Provisional
Probab=23.05 E-value=5.7e+02 Score=23.20 Aligned_cols=86 Identities=12% Similarity=0.022 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 366 (451)
....+.+-.+|.+.++++.|.++.+.+.... +-+..-+.----.|.+.|++..|..=++...+.....|+.......+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q ss_pred HHHHcCC
Q 013010 367 ALCEAGR 373 (451)
Q Consensus 367 ~~~~~g~ 373 (451)
.+.....
T Consensus 260 ~l~~~~~ 266 (269)
T PRK10941 260 SIEQKQI 266 (269)
T ss_pred HHhhcCc
No 466
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.89 E-value=3.6e+02 Score=20.77 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=26.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328 (451)
Q Consensus 293 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 328 (451)
+|+-+.++...++|+++++-|.+.|- .+...-+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GE-It~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGE-ITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 56667888899999999999999983 344444443
No 467
>PRK09462 fur ferric uptake regulator; Provisional
Probab=22.86 E-value=3.8e+02 Score=21.51 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=33.2
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 013010 311 DDMNKKGCIPNRVTYNSFIRYYSVV-NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV 374 (451)
Q Consensus 311 ~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 374 (451)
+.+.+.|.+++..=.. ++..+... +..-.|.++++.+.+.+. ..+..|.-..++.+...|-+
T Consensus 6 ~~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~-~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGE-EIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHCCCE
Confidence 3455566665543332 33334333 345677777777776654 34444444444666666644
No 468
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.85 E-value=6.1e+02 Score=23.40 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=52.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCC---CCC
Q 013010 286 DVVAYNCLIDGCCKTYRIERALELFDDMNK----KGCIPNRVTYNS-FIRYYSVVNEIDKAIEMMRKMQNLNHG---VPT 357 (451)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~t~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~---~p~ 357 (451)
-...+-.+..-||+.++.+.+.+..++..+ .|.+.|.....+ |--.|....-+++.++..+.|.+.|.. .--
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 345566667778888887777776665433 355555432221 222333444466777777777777752 111
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 358 SSSYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 358 ~~~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
-.+|.-+. +....++.+|..++.+..
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 22333332 122345667766665554
No 469
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=22.48 E-value=2.7e+02 Score=30.49 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 013010 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394 (451)
Q Consensus 335 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 394 (451)
...+.+++.+|+.|...+++.--...|...-..+.+.+.+.+|..+|..=++....|...
T Consensus 91 ~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~r 150 (974)
T KOG1166|consen 91 REELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLER 150 (974)
T ss_pred HHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 344455555555555555433333444444444444555555555555444444444433
No 470
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=22.46 E-value=3.4e+02 Score=20.34 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=11.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 013010 174 CLIKVLGEEGLVNEALATFYRM 195 (451)
Q Consensus 174 ~li~~~~~~g~~~~A~~~~~~m 195 (451)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 4444555556666666666554
No 471
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=22.12 E-value=5.5e+02 Score=22.64 Aligned_cols=190 Identities=15% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCc
Q 013010 179 LGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257 (451)
Q Consensus 179 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~ 257 (451)
|-..|-+.-|.-=|.+... +.|+ ..+||-+.--+...|+++.|.+.|+...+.. |....+.-.-.-++.-.|
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~y~Ya~lNRgi~~YY~g-- 147 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIALYYGG-- 147 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC---CcchHHHhccceeeeecC--
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 013010 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE 337 (451)
Q Consensus 258 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 337 (451)
++.-|.+=|...-+. .|+..--...+..--..-++.+|..-+.+=-+. .|..-|...|-.|.-..-
T Consensus 148 ---------R~~LAq~d~~~fYQ~--D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~yLgki 213 (297)
T COG4785 148 ---------RYKLAQDDLLAFYQD--DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFYLGKI 213 (297)
T ss_pred ---------chHhhHHHHHHHHhc--CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHHHhhc
Q ss_pred HHHHHHHHHHHHhcCCC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 013010 338 IDKAIEMMRKMQNLNHG---VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS 389 (451)
Q Consensus 338 ~~~A~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 389 (451)
-+++..---..-..+.. .--..||--|-+-+...|+.++|..+|+-.+...+
T Consensus 214 S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 214 SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
No 472
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.95 E-value=8.1e+02 Score=24.53 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 013010 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFR 236 (451)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 236 (451)
+...+..++.+....+....|+.++++|.+.|..
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d 280 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQD 280 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCC
Confidence 5556666666665555556788888888888753
No 473
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=21.82 E-value=5.8e+02 Score=22.80 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=62.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CC---------CCCCCHHHHHHH
Q 013010 178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP-GF---------RCPPDVYTYTIL 247 (451)
Q Consensus 178 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~---------~~~p~~~~~~~l 247 (451)
-|.+..+..---++.+-.+..++.-+.....+++ +...|+...|+..++.-... |. --.|.......+
T Consensus 168 Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~m 245 (333)
T KOG0991|consen 168 RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKM 245 (333)
T ss_pred hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHH
Confidence 3444444444444555555566666665555554 55678888887777654321 10 013777777888
Q ss_pred HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHh
Q 013010 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288 (451)
Q Consensus 248 i~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 288 (451)
+..|.+. ++++|.+++.++-+.|..|...
T Consensus 246 l~~~~~~------------~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 246 LQACLKR------------NIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred HHHHHhc------------cHHHHHHHHHHHHHcCCCHHHH
Confidence 8877765 7999999999999999887643
No 474
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=21.76 E-value=3.6e+02 Score=27.48 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=35.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 293 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
|...+.+.|-.-+|-.++.+..... ...+-++-.+-++|....++++|++.|++..+..
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 4444445555556666655544443 2244556666667777777777777777766654
No 475
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.39 E-value=3.2e+02 Score=19.58 Aligned_cols=23 Identities=9% Similarity=0.312 Sum_probs=10.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC
Q 013010 330 RYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
..+.++.-.++|+++++-|.+.|
T Consensus 39 D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 39 DFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC
Confidence 33344444444444444444444
No 476
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.27 E-value=8.5e+02 Score=24.53 Aligned_cols=44 Identities=14% Similarity=0.057 Sum_probs=22.4
Q ss_pred HHHHHHHH-HHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 270 EANHLFRL-MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315 (451)
Q Consensus 270 ~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 315 (451)
+....+.. +.+.|+..+......++... .|++..|...++.+..
T Consensus 179 el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 179 EIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh
Confidence 33344433 33456655555555444322 4666666666666543
No 477
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.99 E-value=1.4e+02 Score=23.00 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhCCCCCCH
Q 013010 185 VNEALATFYRMKQFRCRPDV 204 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~~ 204 (451)
.-.|.++++.|.+.+...+.
T Consensus 23 ~~ta~ei~~~l~~~~~~is~ 42 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPRISL 42 (120)
T ss_dssp SEEHHHHHHHHHHTTTT--H
T ss_pred CCCHHHHHHHhhhccCCcCH
Confidence 33444444444444333333
No 478
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.78 E-value=9.2e+02 Score=24.69 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC-------------HhhHHHH---HHHHHhcCCH
Q 013010 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD-------------VVAYNCL---IDGCCKTYRI 303 (451)
Q Consensus 240 ~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-------------~~~~~~l---i~~~~~~g~~ 303 (451)
.+.+.-.+...+...|+.+.+.. -++.++-.|+....-.+.|. ...|-++ |..+.+.|.+
T Consensus 283 HvdsLLqva~~~r~qgD~e~aad----LieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 283 HVDSLLQVADIFRFQGDREMAAD----LIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred chhHHHHHHHHHHHhcchhhHHH----HHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 44556667778888887766655 56677777777766544442 2233333 4456788999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCC--CCChhhHHH-HHHHHHHcCC
Q 013010 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYS-VVNEIDKAIEMMRKMQNLNHG--VPTSSSYTP-IIHALCEAGR 373 (451)
Q Consensus 304 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~--~p~~~~~~~-li~~~~~~g~ 373 (451)
.-|.++-+-+.+....-|+.....+|..|+ ++.++.=.++++++....+.. .|| ..|+. |...|.+...
T Consensus 359 rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 359 RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNE 431 (665)
T ss_pred HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCC
Confidence 999999999888765557888888888886 567788888888887655532 354 45554 4444444433
No 479
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.74 E-value=3.6e+02 Score=19.97 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=17.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKG 317 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 317 (451)
..|++.|+.++...|.-..|..+-+.+...|
T Consensus 64 ~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 64 KASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred CcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 3456666666666666555655555555444
No 480
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=20.67 E-value=1.1e+03 Score=25.78 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC
Q 013010 358 SSSYTPIIHALCEAGRVLEARDFLAELVD-GGSVPREYTYKLVCDALNAAE 407 (451)
Q Consensus 358 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g 407 (451)
..++..-...+...|++..|.+++.++++ .|-.++...|..+++.+...|
T Consensus 1231 sK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1231 SKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred chheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 33444444444444555555555544443 234444444444444444444
No 481
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.49 E-value=7.6e+02 Score=23.62 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHh
Q 013010 267 RIWEANHLFRLMLF 280 (451)
Q Consensus 267 ~~~~a~~~~~~m~~ 280 (451)
+++.|+.+|....-
T Consensus 198 ~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 198 RFERALYLLEICVT 211 (422)
T ss_pred cHHHHHHHHHHHHh
Confidence 88999988887764
No 482
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.43 E-value=7.5e+02 Score=23.53 Aligned_cols=21 Identities=10% Similarity=-0.083 Sum_probs=11.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 013010 372 GRVLEARDFLAELVDGGSVPR 392 (451)
Q Consensus 372 g~~~~A~~l~~~m~~~g~~p~ 392 (451)
++..++..+++++.+.|..|.
T Consensus 259 ~~~~~~~~~~~~l~~~g~~~~ 279 (363)
T PRK14961 259 KDSKKTMLLLNKISSIGIEWE 279 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555554443
No 483
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=20.41 E-value=6.7e+02 Score=22.99 Aligned_cols=110 Identities=12% Similarity=0.032 Sum_probs=69.6
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010 292 CLIDGCCKTYR---IERALELFDDMNKKGC----IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364 (451)
Q Consensus 292 ~li~~~~~~g~---~~~a~~~~~~m~~~g~----~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 364 (451)
.++...| |+ .+.|.+.|+.....+. ..+...-..++....+.|+.+.-..+++.... .++...-..+
T Consensus 134 ~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~ 207 (324)
T PF11838_consen 134 LLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRL 207 (324)
T ss_dssp HHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHH
T ss_pred HHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHH
Confidence 3355555 44 5678888888777522 34666667777777788887776666666654 3567888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCC
Q 013010 365 IHALCEAGRVLEARDFLAELVDGG-SVPREYTYKLVCDALNAAEEP 409 (451)
Q Consensus 365 i~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~ 409 (451)
+.+++...+.+...++++.....+ +++.. ...++.++...+..
T Consensus 208 l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~ 251 (324)
T PF11838_consen 208 LSALACSPDPELLKRLLDLLLSNDKVRSQD--IRYVLAGLASSNPV 251 (324)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHCTSTS-TTT--HHHHHHHHH-CSTT
T ss_pred HHhhhccCCHHHHHHHHHHHcCCcccccHH--HHHHHHHHhcCChh
Confidence 999999999999899999888765 55443 34445556544443
Done!