Query 013010
Match_columns 451
No_of_seqs 495 out of 2483
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 20:32:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 4.3E-34 1.5E-38 281.3 23.1 215 187-406 8-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.4E-34 2.2E-38 280.1 24.0 208 149-371 7-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 5.1E-25 1.7E-29 223.4 33.6 297 102-423 278-580 (597)
4 2xpi_A Anaphase-promoting comp 99.9 2.3E-24 7.8E-29 218.6 32.2 301 104-423 158-546 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.3E-19 4.6E-24 173.5 34.7 294 104-422 75-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 7.6E-19 2.6E-23 168.2 33.2 291 106-422 43-334 (388)
7 2y4t_A DNAJ homolog subfamily 99.8 2.3E-18 7.9E-23 168.0 33.4 293 105-422 35-358 (450)
8 3spa_A Mtrpol, DNA-directed RN 99.8 5.6E-21 1.9E-25 193.7 8.4 120 203-335 126-249 (1134)
9 3spa_A Mtrpol, DNA-directed RN 99.8 1.8E-20 6.1E-25 190.1 11.5 152 239-407 125-286 (1134)
10 2y4t_A DNAJ homolog subfamily 99.8 2.5E-17 8.6E-22 160.7 31.6 271 128-422 22-324 (450)
11 3ieg_A DNAJ homolog subfamily 99.8 1.4E-15 4.7E-20 143.1 35.6 293 105-423 12-336 (359)
12 1fch_A Peroxisomal targeting s 99.8 1E-16 3.6E-21 151.8 26.9 290 107-417 36-354 (368)
13 3hym_B Cell division cycle pro 99.8 9.4E-16 3.2E-20 142.6 31.9 281 106-410 32-322 (330)
14 4eqf_A PEX5-related protein; a 99.8 2.1E-16 7.1E-21 149.9 25.4 265 131-417 64-351 (365)
15 2gw1_A Mitochondrial precursor 99.7 6.3E-16 2.1E-20 153.2 28.2 294 104-421 14-400 (514)
16 3hym_B Cell division cycle pro 99.7 2.2E-15 7.5E-20 140.2 29.7 275 127-422 17-299 (330)
17 3cv0_A Peroxisome targeting si 99.7 1.8E-15 6.1E-20 140.6 25.8 267 131-419 20-312 (327)
18 2gw1_A Mitochondrial precursor 99.7 8.4E-15 2.9E-19 145.0 30.0 310 105-423 48-479 (514)
19 3ieg_A DNAJ homolog subfamily 99.7 5.2E-14 1.8E-18 132.2 33.4 268 131-423 2-302 (359)
20 1fch_A Peroxisomal targeting s 99.7 4.7E-15 1.6E-19 140.4 25.0 260 104-383 72-355 (368)
21 3fp2_A TPR repeat-containing p 99.7 1.2E-14 3.9E-19 145.0 27.9 295 103-422 32-407 (537)
22 4eqf_A PEX5-related protein; a 99.7 5.8E-15 2E-19 139.8 24.1 259 104-383 73-352 (365)
23 3cv0_A Peroxisome targeting si 99.7 1.6E-14 5.4E-19 134.1 25.5 257 105-384 30-312 (327)
24 3mkr_A Coatomer subunit epsilo 99.7 6.4E-14 2.2E-18 128.4 26.2 245 109-386 12-263 (291)
25 3mkr_A Coatomer subunit epsilo 99.6 8.5E-14 2.9E-18 127.6 25.6 253 142-423 9-265 (291)
26 3fp2_A TPR repeat-containing p 99.6 2.2E-13 7.6E-18 135.7 29.8 232 172-422 246-491 (537)
27 1b89_A Protein (clathrin heavy 99.6 8.7E-15 3E-19 138.2 13.7 240 108-406 15-254 (449)
28 3uq3_A Heat shock protein STI1 99.6 7.7E-13 2.6E-17 118.2 25.8 225 132-386 5-235 (258)
29 1b89_A Protein (clathrin heavy 99.6 4.8E-15 1.7E-19 139.9 9.3 221 143-420 14-234 (449)
30 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.3E-13 1.1E-17 122.0 21.1 251 105-381 14-269 (275)
31 3uq3_A Heat shock protein STI1 99.6 9.6E-13 3.3E-17 117.5 23.8 230 168-423 4-237 (258)
32 2pl2_A Hypothetical conserved 99.5 1.5E-12 5.3E-17 113.7 22.8 198 168-385 4-212 (217)
33 2ho1_A Type 4 fimbrial biogene 99.5 3.2E-12 1.1E-16 114.0 24.6 203 132-352 37-239 (252)
34 2vq2_A PILW, putative fimbrial 99.5 6.5E-12 2.2E-16 109.5 26.1 200 169-386 8-210 (225)
35 2pl2_A Hypothetical conserved 99.5 1.3E-12 4.3E-17 114.3 20.9 201 129-350 2-213 (217)
36 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-11 4.2E-16 110.2 27.9 209 169-397 37-246 (252)
37 1ouv_A Conserved hypothetical 99.5 2.7E-11 9.2E-16 109.6 30.5 226 170-427 7-256 (273)
38 1ouv_A Conserved hypothetical 99.5 1.1E-10 3.7E-15 105.6 34.3 224 131-388 5-252 (273)
39 2vq2_A PILW, putative fimbrial 99.5 1.3E-11 4.6E-16 107.5 26.2 205 131-352 7-212 (225)
40 2xm6_A Protein corresponding t 99.5 3.4E-10 1.1E-14 111.6 38.5 285 109-423 92-433 (490)
41 2xm6_A Protein corresponding t 99.5 5E-10 1.7E-14 110.4 39.6 286 109-424 56-398 (490)
42 3u4t_A TPR repeat-containing p 99.5 9.7E-12 3.3E-16 112.2 24.8 236 133-387 4-250 (272)
43 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.8E-12 6.3E-17 117.0 18.7 250 143-415 16-268 (275)
44 2q7f_A YRRB protein; TPR, prot 99.5 3.8E-12 1.3E-16 112.7 20.1 202 131-352 22-223 (243)
45 2q7f_A YRRB protein; TPR, prot 99.5 5.3E-12 1.8E-16 111.7 20.2 202 167-387 21-222 (243)
46 3u4t_A TPR repeat-containing p 99.5 2.5E-11 8.7E-16 109.4 24.9 239 106-364 13-261 (272)
47 2h6f_A Protein farnesyltransfe 99.4 4.6E-11 1.6E-15 113.3 25.3 248 132-405 97-365 (382)
48 3sf4_A G-protein-signaling mod 99.4 1.3E-11 4.6E-16 117.9 21.0 288 130-421 7-335 (406)
49 4a1s_A PINS, partner of inscut 99.4 1E-11 3.4E-16 119.3 19.4 285 133-421 49-371 (411)
50 3ro2_A PINS homolog, G-protein 99.4 2.1E-11 7.2E-16 113.0 20.5 283 134-421 7-331 (338)
51 3sf4_A G-protein-signaling mod 99.4 3.1E-11 1.1E-15 115.3 19.1 294 104-411 17-365 (406)
52 3nf1_A KLC 1, kinesin light ch 99.3 5.8E-11 2E-15 109.0 19.4 241 168-421 26-306 (311)
53 2ond_A Cleavage stimulation fa 99.3 9.3E-10 3.2E-14 101.5 27.5 218 113-352 33-271 (308)
54 4g1t_A Interferon-induced prot 99.3 1.3E-09 4.5E-14 106.5 29.7 302 103-421 58-400 (472)
55 4a1s_A PINS, partner of inscut 99.3 5.7E-11 1.9E-15 114.0 19.4 270 104-387 56-372 (411)
56 2h6f_A Protein farnesyltransfe 99.3 1.9E-10 6.4E-15 109.1 22.6 246 105-370 106-365 (382)
57 3ro2_A PINS homolog, G-protein 99.3 6.6E-11 2.2E-15 109.6 18.7 269 105-387 14-332 (338)
58 2ond_A Cleavage stimulation fa 99.3 2.3E-09 8E-14 98.8 29.0 218 149-387 33-270 (308)
59 2ooe_A Cleavage stimulation fa 99.3 5.1E-09 1.7E-13 104.2 33.0 200 204-421 272-491 (530)
60 4abn_A Tetratricopeptide repea 99.3 1.9E-10 6.4E-15 112.9 21.9 216 111-348 83-318 (474)
61 4abn_A Tetratricopeptide repea 99.3 1.7E-10 5.7E-15 113.2 21.3 223 148-383 84-317 (474)
62 3ulq_A Response regulator aspa 99.3 3.4E-10 1.2E-14 107.8 21.3 299 109-421 25-367 (383)
63 3vtx_A MAMA; tetratricopeptide 99.3 1.6E-09 5.5E-14 91.4 22.7 165 204-386 5-169 (184)
64 3vtx_A MAMA; tetratricopeptide 99.3 1.2E-09 4E-14 92.3 21.6 167 131-316 4-170 (184)
65 4g1t_A Interferon-induced prot 99.3 4.7E-09 1.6E-13 102.6 28.2 282 128-425 47-366 (472)
66 3nf1_A KLC 1, kinesin light ch 99.3 2.3E-10 7.7E-15 105.0 17.7 208 202-420 25-271 (311)
67 3as5_A MAMA; tetratricopeptide 99.2 2.8E-09 9.5E-14 89.4 21.3 163 170-349 9-171 (186)
68 1xi4_A Clathrin heavy chain; a 99.2 1.7E-08 5.9E-13 106.6 30.7 190 105-348 1058-1247(1630)
69 1xi4_A Clathrin heavy chain; a 99.2 7.5E-09 2.6E-13 109.3 27.8 252 109-420 1089-1340(1630)
70 1hz4_A MALT regulatory protein 99.2 2.3E-08 8E-13 94.5 29.1 275 136-421 18-321 (373)
71 3as5_A MAMA; tetratricopeptide 99.2 4.3E-09 1.5E-13 88.2 20.3 164 205-386 9-172 (186)
72 3ulq_A Response regulator aspa 99.2 1.9E-09 6.7E-14 102.5 19.5 235 138-386 109-367 (383)
73 3edt_B KLC 2, kinesin light ch 99.1 6.5E-10 2.2E-14 100.2 14.8 226 112-350 24-280 (283)
74 3edt_B KLC 2, kinesin light ch 99.1 1.9E-09 6.6E-14 97.1 17.5 207 203-421 42-280 (283)
75 1hz4_A MALT regulatory protein 99.1 3.2E-08 1.1E-12 93.5 25.7 269 106-386 24-321 (373)
76 3q15_A PSP28, response regulat 99.1 1.5E-08 5.2E-13 96.1 23.1 298 109-421 25-364 (378)
77 2ooe_A Cleavage stimulation fa 99.1 4.6E-08 1.6E-12 97.3 27.2 216 150-386 256-491 (530)
78 4gyw_A UDP-N-acetylglucosamine 99.1 6.5E-09 2.2E-13 106.4 19.6 166 131-315 8-173 (723)
79 4gyw_A UDP-N-acetylglucosamine 99.0 1.1E-08 3.8E-13 104.7 20.0 163 168-349 8-172 (723)
80 3q15_A PSP28, response regulat 99.0 7.7E-08 2.6E-12 91.2 22.1 234 138-386 107-364 (378)
81 4i17_A Hypothetical protein; T 99.0 1.4E-07 4.6E-12 82.5 21.9 199 168-394 6-214 (228)
82 4i17_A Hypothetical protein; T 98.9 1.6E-07 5.6E-12 82.0 21.0 196 202-423 5-210 (228)
83 3mv2_B Coatomer subunit epsilo 98.9 1.4E-07 4.9E-12 85.3 19.9 182 188-388 85-283 (310)
84 2fo7_A Synthetic consensus TPR 98.9 1.3E-07 4.6E-12 74.2 17.4 129 243-386 3-131 (136)
85 2fo7_A Synthetic consensus TPR 98.9 9.3E-08 3.2E-12 75.2 16.1 130 134-281 3-132 (136)
86 3e4b_A ALGK; tetratricopeptide 98.9 1.6E-06 5.4E-11 84.3 28.0 278 110-426 88-391 (452)
87 1qqe_A Vesicular transport pro 98.9 1.6E-07 5.5E-12 85.6 19.1 211 147-385 32-267 (292)
88 3e4b_A ALGK; tetratricopeptide 98.9 1.8E-07 6.3E-12 90.9 20.6 272 113-425 55-354 (452)
89 1qqe_A Vesicular transport pro 98.9 8.9E-08 3E-12 87.4 17.2 199 139-350 44-268 (292)
90 3qky_A Outer membrane assembly 98.8 1.6E-07 5.6E-12 83.9 16.8 216 130-378 13-252 (261)
91 3qky_A Outer membrane assembly 98.8 9.6E-07 3.3E-11 78.8 20.6 207 168-409 14-248 (261)
92 3urz_A Uncharacterized protein 98.8 9.4E-07 3.2E-11 76.1 19.1 169 136-324 8-192 (208)
93 3mv2_B Coatomer subunit epsilo 98.7 2.3E-06 7.9E-11 77.4 20.9 182 151-352 85-283 (310)
94 3rjv_A Putative SEL1 repeat pr 98.7 2.2E-06 7.4E-11 74.0 20.0 176 113-318 3-199 (212)
95 3rjv_A Putative SEL1 repeat pr 98.7 2.4E-06 8.1E-11 73.8 20.2 176 150-352 4-198 (212)
96 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.3E-06 4.5E-11 76.1 18.6 184 132-352 4-214 (225)
97 2yhc_A BAMD, UPF0169 lipoprote 98.6 3.7E-06 1.3E-10 73.2 19.3 190 168-388 3-214 (225)
98 3qou_A Protein YBBN; thioredox 98.6 2.2E-06 7.6E-11 77.8 18.5 161 133-312 118-280 (287)
99 2pzi_A Probable serine/threoni 98.6 4.2E-07 1.4E-11 93.1 15.0 174 180-373 402-583 (681)
100 2ifu_A Gamma-SNAP; membrane fu 98.6 9.8E-07 3.3E-11 81.0 16.1 232 144-414 3-253 (307)
101 2vsy_A XCC0866; transferase, g 98.6 1.6E-06 5.4E-11 87.0 18.8 153 145-316 2-157 (568)
102 4ga2_A E3 SUMO-protein ligase 98.6 4.6E-07 1.6E-11 73.6 12.2 143 103-255 4-148 (150)
103 3qou_A Protein YBBN; thioredox 98.6 1.2E-06 4.2E-11 79.5 16.1 161 206-383 119-280 (287)
104 3urz_A Uncharacterized protein 98.6 2.6E-06 8.8E-11 73.3 17.3 109 173-298 8-133 (208)
105 2r5s_A Uncharacterized protein 98.6 8.4E-07 2.9E-11 74.1 13.4 62 287-348 108-170 (176)
106 2ifu_A Gamma-SNAP; membrane fu 98.6 1.8E-06 6.1E-11 79.2 16.7 229 109-380 4-254 (307)
107 2vsy_A XCC0866; transferase, g 98.6 1.7E-06 5.9E-11 86.7 17.9 164 182-364 2-168 (568)
108 2pzi_A Probable serine/threoni 98.6 2.5E-06 8.5E-11 87.4 18.8 173 143-337 402-583 (681)
109 3dra_A Protein farnesyltransfe 98.6 6.3E-05 2.1E-09 68.4 26.0 221 146-386 47-286 (306)
110 2r5s_A Uncharacterized protein 98.5 1.5E-06 5.1E-11 72.5 13.5 78 306-385 93-171 (176)
111 3dra_A Protein farnesyltransfe 98.5 8.8E-05 3E-09 67.5 25.3 236 113-364 50-299 (306)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.2E-05 3.9E-10 69.0 18.5 131 242-388 7-151 (213)
113 3u3w_A Transcriptional activat 98.5 1.1E-05 3.9E-10 73.2 19.3 164 210-385 81-264 (293)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.6E-05 5.6E-10 68.0 18.5 129 171-317 8-151 (213)
115 4e6h_A MRNA 3'-END-processing 98.4 2.9E-05 1E-09 78.6 22.5 234 113-368 326-584 (679)
116 3u3w_A Transcriptional activat 98.4 4.2E-05 1.4E-09 69.4 21.7 204 127-350 41-265 (293)
117 4ga2_A E3 SUMO-protein ligase 98.4 1.2E-06 4.2E-11 71.0 10.1 110 139-255 4-113 (150)
118 1na0_A Designed protein CTPR3; 98.4 1.1E-05 3.7E-10 62.1 15.0 115 132-253 9-123 (125)
119 1a17_A Serine/threonine protei 98.4 2E-05 6.8E-10 64.3 16.5 130 132-279 13-144 (166)
120 1na0_A Designed protein CTPR3; 98.4 2.5E-05 8.4E-10 60.0 15.8 115 287-405 9-123 (125)
121 3q7a_A Farnesyltransferase alp 98.3 0.00063 2.1E-08 62.7 27.1 231 145-387 67-331 (349)
122 2qfc_A PLCR protein; TPR, HTH, 98.3 5E-05 1.7E-09 68.9 19.7 170 133-314 76-264 (293)
123 4e6h_A MRNA 3'-END-processing 98.3 6.6E-05 2.2E-09 76.1 22.0 219 186-422 326-570 (679)
124 3gw4_A Uncharacterized protein 98.3 1.1E-05 3.9E-10 68.3 14.3 98 288-385 67-174 (203)
125 3gw4_A Uncharacterized protein 98.3 8.2E-06 2.8E-10 69.2 13.4 159 180-351 3-176 (203)
126 2qfc_A PLCR protein; TPR, HTH, 98.3 3.9E-05 1.3E-09 69.6 18.3 170 169-349 75-264 (293)
127 2c2l_A CHIP, carboxy terminus 98.3 6.3E-06 2.1E-10 74.5 12.9 81 171-255 6-86 (281)
128 1a17_A Serine/threonine protei 98.3 2.6E-05 9.1E-10 63.5 15.7 128 242-384 14-143 (166)
129 4gco_A Protein STI-1; structur 98.3 2.1E-05 7.3E-10 61.4 14.0 108 133-247 14-121 (126)
130 2lni_A Stress-induced-phosphop 98.3 1.9E-05 6.6E-10 61.6 13.5 121 128-255 12-132 (133)
131 2vyi_A SGTA protein; chaperone 98.3 4.6E-05 1.6E-09 59.0 15.6 120 286-409 11-130 (131)
132 2vyi_A SGTA protein; chaperone 98.3 2.5E-05 8.4E-10 60.6 13.8 118 131-255 11-128 (131)
133 2c2l_A CHIP, carboxy terminus 98.3 6.5E-06 2.2E-10 74.4 11.6 194 131-351 3-199 (281)
134 4f3v_A ESX-1 secretion system 98.3 4.4E-05 1.5E-09 68.0 16.6 197 109-325 19-244 (282)
135 2uy1_A Cleavage stimulation fa 98.2 0.00098 3.4E-08 65.1 27.7 280 110-420 28-411 (493)
136 4f3v_A ESX-1 secretion system 98.2 6.1E-05 2.1E-09 67.2 17.3 188 144-352 18-238 (282)
137 3gyz_A Chaperone protein IPGC; 98.2 1.5E-05 5E-10 64.6 11.8 99 168-281 35-133 (151)
138 2e2e_A Formate-dependent nitri 98.2 1.9E-05 6.4E-10 65.6 12.9 123 106-234 20-145 (177)
139 2lni_A Stress-induced-phosphop 98.2 5E-05 1.7E-09 59.1 14.5 100 167-281 14-113 (133)
140 3gyz_A Chaperone protein IPGC; 98.2 1.3E-05 4.5E-10 64.9 11.0 100 131-234 35-134 (151)
141 2e2e_A Formate-dependent nitri 98.2 1.8E-05 6.2E-10 65.7 12.0 116 143-265 21-139 (177)
142 4gco_A Protein STI-1; structur 98.2 5.8E-05 2E-09 58.9 14.1 100 288-392 14-113 (126)
143 3q7a_A Farnesyltransferase alp 98.1 0.00097 3.3E-08 61.4 23.7 226 112-351 70-331 (349)
144 1p5q_A FKBP52, FK506-binding p 98.1 7.1E-05 2.4E-09 69.4 16.0 132 240-385 146-292 (336)
145 1elw_A TPR1-domain of HOP; HOP 98.1 0.00013 4.3E-09 55.3 14.7 109 132-247 4-112 (118)
146 1p5q_A FKBP52, FK506-binding p 98.1 7.3E-05 2.5E-09 69.4 15.6 120 170-306 148-283 (336)
147 2vgx_A Chaperone SYCD; alterna 98.1 3E-05 1E-09 62.5 10.6 100 131-234 20-119 (148)
148 2kck_A TPR repeat; tetratricop 98.1 6.6E-05 2.2E-09 56.3 12.0 100 131-234 5-107 (112)
149 2vgx_A Chaperone SYCD; alterna 98.0 3.5E-05 1.2E-09 62.1 10.8 99 168-281 20-118 (148)
150 1elr_A TPR2A-domain of HOP; HO 98.0 8.7E-05 3E-09 57.4 12.4 114 287-403 4-122 (131)
151 3upv_A Heat shock protein STI1 98.0 0.00019 6.6E-09 55.5 14.3 97 288-387 5-101 (126)
152 3upv_A Heat shock protein STI1 98.0 0.00011 3.8E-09 56.9 12.9 98 132-233 4-101 (126)
153 4b4t_Q 26S proteasome regulato 98.0 0.0002 6.9E-09 68.6 17.4 167 207-385 58-243 (434)
154 1elw_A TPR1-domain of HOP; HOP 98.0 0.00036 1.2E-08 52.6 15.6 99 287-388 4-102 (118)
155 4gcn_A Protein STI-1; structur 98.0 8.5E-05 2.9E-09 58.0 12.0 106 133-245 9-120 (127)
156 3n71_A Histone lysine methyltr 98.0 5.7E-05 2E-09 73.5 13.1 129 141-280 318-463 (490)
157 2fbn_A 70 kDa peptidylprolyl i 98.0 1.5E-05 5.3E-10 67.6 8.2 97 288-387 89-186 (198)
158 1elr_A TPR2A-domain of HOP; HO 98.0 0.00012 4E-09 56.7 12.6 113 132-251 4-122 (131)
159 2kck_A TPR repeat; tetratricop 98.0 9.7E-05 3.3E-09 55.4 11.6 100 286-388 5-107 (112)
160 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00016 5.4E-09 59.1 13.7 100 131-234 10-109 (164)
161 3q49_B STIP1 homology and U bo 98.0 0.00018 6.3E-09 56.4 13.3 101 129-233 6-106 (137)
162 2xcb_A PCRH, regulatory protei 97.9 8.7E-05 3E-09 59.1 11.3 99 132-234 18-116 (142)
163 2dba_A Smooth muscle cell asso 97.9 0.00044 1.5E-08 54.8 15.6 98 286-387 27-128 (148)
164 3q49_B STIP1 homology and U bo 97.9 0.00027 9.2E-09 55.4 14.1 99 285-386 7-105 (137)
165 2dba_A Smooth muscle cell asso 97.9 0.0002 6.8E-09 56.9 13.4 116 129-248 25-140 (148)
166 2xcb_A PCRH, regulatory protei 97.9 0.00019 6.5E-09 57.1 13.1 97 288-387 19-115 (142)
167 2fbn_A 70 kDa peptidylprolyl i 97.9 0.00022 7.5E-09 60.3 13.9 119 133-255 39-170 (198)
168 3sz7_A HSC70 cochaperone (SGT) 97.9 0.0005 1.7E-08 56.1 15.4 99 286-387 10-108 (164)
169 3n71_A Histone lysine methyltr 97.9 7.4E-05 2.5E-09 72.7 11.6 134 178-315 318-463 (490)
170 2xev_A YBGF; tetratricopeptide 97.9 0.00035 1.2E-08 54.1 13.5 98 135-234 5-106 (129)
171 4b4t_Q 26S proteasome regulato 97.9 0.00091 3.1E-08 63.9 18.9 199 140-350 12-244 (434)
172 4gcn_A Protein STI-1; structur 97.9 0.00031 1.1E-08 54.7 12.8 107 204-326 8-120 (127)
173 3dss_A Geranylgeranyl transfer 97.8 0.014 4.7E-07 53.4 25.1 193 113-316 47-267 (331)
174 1hxi_A PEX5, peroxisome target 97.8 0.00018 6.1E-09 55.6 10.8 97 134-234 19-115 (121)
175 3ro3_A PINS homolog, G-protein 97.8 0.00022 7.4E-09 57.3 11.8 133 242-385 10-156 (164)
176 3k9i_A BH0479 protein; putativ 97.8 4.5E-05 1.6E-09 58.5 7.1 88 145-233 3-90 (117)
177 3ro3_A PINS homolog, G-protein 97.8 0.00016 5.5E-09 58.1 10.8 135 169-314 9-156 (164)
178 2xev_A YBGF; tetratricopeptide 97.7 0.0011 3.8E-08 51.1 13.5 92 292-387 7-105 (129)
179 1wao_1 Serine/threonine protei 97.7 0.00019 6.6E-09 69.9 10.9 124 99-228 9-134 (477)
180 1hxi_A PEX5, peroxisome target 97.7 0.00049 1.7E-08 53.1 11.2 96 171-281 19-114 (121)
181 3k9i_A BH0479 protein; putativ 97.6 0.00013 4.3E-09 55.9 7.0 86 300-387 3-90 (117)
182 1ihg_A Cyclophilin 40; ppiase 97.6 0.0012 4.2E-08 61.9 14.6 118 133-255 224-355 (370)
183 3rkv_A Putative peptidylprolyl 97.6 0.001 3.5E-08 54.0 12.4 102 132-234 11-127 (162)
184 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0011 3.6E-08 64.3 14.5 131 240-386 267-414 (457)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0012 4E-08 64.0 14.8 120 132-255 268-399 (457)
186 1wao_1 Serine/threonine protei 97.6 0.00024 8.3E-09 69.2 9.9 123 136-276 10-134 (477)
187 3dss_A Geranylgeranyl transfer 97.5 0.05 1.7E-06 49.7 26.5 171 143-333 40-238 (331)
188 3rkv_A Putative peptidylprolyl 97.5 0.0014 4.9E-08 53.1 12.6 102 288-393 12-130 (162)
189 1klx_A Cysteine rich protein B 97.5 0.0044 1.5E-07 48.9 14.3 113 109-235 8-128 (138)
190 1klx_A Cysteine rich protein B 97.4 0.0099 3.4E-07 46.8 15.7 112 266-389 9-128 (138)
191 1ihg_A Cyclophilin 40; ppiase 97.4 0.0026 8.8E-08 59.7 14.1 123 242-378 224-361 (370)
192 2hr2_A Hypothetical protein; a 97.4 0.0071 2.4E-07 48.6 14.2 106 290-397 14-146 (159)
193 2l6j_A TPR repeat-containing p 97.3 0.00035 1.2E-08 52.4 5.6 93 131-228 3-102 (111)
194 2l6j_A TPR repeat-containing p 97.3 0.0025 8.6E-08 47.5 10.4 88 321-412 3-97 (111)
195 2hr2_A Hypothetical protein; a 97.2 0.0042 1.4E-07 50.0 11.2 93 172-280 14-130 (159)
196 2if4_A ATFKBP42; FKBP-like, al 97.2 0.0019 6.5E-08 59.8 10.5 132 133-281 180-328 (338)
197 1na3_A Designed protein CTPR2; 97.2 0.0048 1.6E-07 43.9 10.5 80 169-252 9-88 (91)
198 2uy1_A Cleavage stimulation fa 97.1 0.061 2.1E-06 52.4 21.1 205 149-386 196-412 (493)
199 2if4_A ATFKBP42; FKBP-like, al 97.1 0.0015 5E-08 60.6 8.9 113 241-385 179-291 (338)
200 1dce_A Protein (RAB geranylger 97.1 0.037 1.3E-06 54.9 19.1 184 112-305 45-244 (567)
201 3qwp_A SET and MYND domain-con 97.0 0.0055 1.9E-07 58.6 12.2 95 138-232 293-399 (429)
202 2kat_A Uncharacterized protein 97.0 0.0046 1.6E-07 46.7 9.3 78 151-232 4-81 (115)
203 2kat_A Uncharacterized protein 97.0 0.0066 2.3E-07 45.7 10.0 78 306-386 4-81 (115)
204 1dce_A Protein (RAB geranylger 96.9 0.075 2.6E-06 52.7 19.8 183 220-411 45-244 (567)
205 1na3_A Designed protein CTPR2; 96.9 0.013 4.4E-07 41.6 10.8 62 323-386 10-71 (91)
206 3qww_A SET and MYND domain-con 96.9 0.0034 1.2E-07 60.0 9.3 89 144-232 310-410 (433)
207 3ma5_A Tetratricopeptide repea 96.8 0.0069 2.4E-07 44.5 8.8 63 321-385 6-68 (100)
208 3qwp_A SET and MYND domain-con 96.7 0.0085 2.9E-07 57.2 10.5 93 175-278 293-397 (429)
209 3qww_A SET and MYND domain-con 96.7 0.0063 2.2E-07 58.1 9.4 89 109-197 311-410 (433)
210 3ma5_A Tetratricopeptide repea 96.6 0.013 4.3E-07 43.1 8.6 64 131-197 6-69 (100)
211 1zu2_A Mitochondrial import re 96.4 0.0057 2E-07 49.1 6.3 57 186-248 63-131 (158)
212 1zu2_A Mitochondrial import re 96.3 0.013 4.6E-07 46.9 7.9 115 106-233 12-147 (158)
213 3ly7_A Transcriptional activat 95.9 0.13 4.5E-06 47.3 13.4 73 284-361 274-346 (372)
214 3ly7_A Transcriptional activat 95.7 1.2 4.1E-05 41.0 18.8 75 319-398 274-348 (372)
215 3mkq_A Coatomer beta'-subunit; 95.4 0.25 8.5E-06 51.1 15.2 95 267-383 667-761 (814)
216 2kc7_A BFR218_protein; tetratr 95.1 0.15 5E-06 36.7 9.0 57 295-352 8-65 (99)
217 2kc7_A BFR218_protein; tetratr 94.6 0.39 1.3E-05 34.3 10.2 59 328-388 6-65 (99)
218 1pc2_A Mitochondria fission pr 94.5 0.62 2.1E-05 36.8 11.5 64 321-386 31-99 (152)
219 3mkq_A Coatomer beta'-subunit; 94.5 0.48 1.6E-05 48.9 14.3 151 143-347 610-761 (814)
220 1pc2_A Mitochondria fission pr 94.5 0.25 8.5E-06 39.1 9.1 87 112-203 14-103 (152)
221 3bee_A Putative YFRE protein; 94.4 0.43 1.5E-05 34.2 9.7 66 130-198 4-72 (93)
222 3bee_A Putative YFRE protein; 94.4 0.4 1.4E-05 34.4 9.4 47 338-386 25-71 (93)
223 1wy6_A Hypothetical protein ST 94.3 1.4 4.6E-05 34.0 15.6 76 357-433 90-165 (172)
224 1wy6_A Hypothetical protein ST 94.1 1.5 5.3E-05 33.7 15.5 84 182-284 74-157 (172)
225 2v5f_A Prolyl 4-hydroxylase su 93.6 0.61 2.1E-05 34.1 9.4 67 131-197 4-74 (104)
226 3mkq_B Coatomer subunit alpha; 93.4 1.4 4.9E-05 35.7 11.8 101 107-231 16-116 (177)
227 3mkq_B Coatomer subunit alpha; 93.4 2.7 9.1E-05 34.1 14.4 95 267-383 20-114 (177)
228 2v5f_A Prolyl 4-hydroxylase su 93.1 1 3.5E-05 32.9 10.0 63 289-351 7-75 (104)
229 3u64_A Protein TP_0956; tetrat 91.3 1.3 4.3E-05 39.3 9.6 95 110-209 177-282 (301)
230 2ff4_A Probable regulatory pro 91.2 0.98 3.4E-05 42.2 9.7 73 325-399 174-251 (388)
231 3u64_A Protein TP_0956; tetrat 90.8 2.5 8.6E-05 37.4 11.1 83 267-353 178-271 (301)
232 3eiq_C Programmed cell death p 90.6 0.66 2.3E-05 42.5 7.5 99 323-423 218-322 (358)
233 1nzn_A CGI-135 protein, fissio 90.5 0.61 2.1E-05 35.5 6.0 95 293-392 7-106 (126)
234 4h7y_A Dual specificity protei 90.4 4.3 0.00015 31.9 10.7 115 131-251 12-138 (161)
235 2ff4_A Probable regulatory pro 89.8 1.3 4.3E-05 41.5 9.1 70 172-244 174-248 (388)
236 4gns_B Protein CSD3, chitin bi 89.1 19 0.00065 36.6 17.4 127 207-349 251-398 (754)
237 1v54_E Cytochrome C oxidase po 88.5 2.4 8.2E-05 30.6 7.4 64 184-250 25-88 (109)
238 1nzn_A CGI-135 protein, fissio 88.1 7.1 0.00024 29.6 11.2 84 267-352 16-104 (126)
239 1v54_E Cytochrome C oxidase po 87.9 5.2 0.00018 28.9 8.8 48 305-352 28-75 (109)
240 4b4t_P 26S proteasome regulato 86.0 24 0.00081 33.4 18.2 96 291-386 141-246 (445)
241 4h7y_A Dual specificity protei 85.7 11 0.00039 29.5 11.3 119 239-366 11-136 (161)
242 4b4t_P 26S proteasome regulato 85.0 26 0.0009 33.1 18.4 97 243-350 139-246 (445)
243 2zu6_B Programmed cell death p 83.7 4.1 0.00014 36.5 8.4 95 325-421 169-269 (307)
244 4gns_B Protein CSD3, chitin bi 83.4 19 0.00066 36.5 14.0 113 268-384 265-397 (754)
245 2y69_E Cytochrome C oxidase su 83.2 7.3 0.00025 29.8 8.1 64 184-250 68-131 (152)
246 4ady_A RPN2, 26S proteasome re 82.0 36 0.0012 35.5 15.5 121 296-420 533-656 (963)
247 2y69_E Cytochrome C oxidase su 81.9 12 0.0004 28.7 8.8 59 305-365 71-129 (152)
248 3esl_A Checkpoint serine/threo 80.8 13 0.00043 30.8 9.5 87 112-203 60-149 (202)
249 3txn_A 26S proteasome regulato 80.4 37 0.0013 31.5 16.6 173 206-385 21-208 (394)
250 4ady_A RPN2, 26S proteasome re 80.0 62 0.0021 33.8 16.6 248 139-410 418-680 (963)
251 4fhn_B Nucleoporin NUP120; pro 79.9 70 0.0024 34.4 21.3 53 173-230 816-868 (1139)
252 2ion_A PDCD4, programmed cell 79.5 5.4 0.00019 31.4 6.8 69 325-395 12-82 (152)
253 4fhn_B Nucleoporin NUP120; pro 78.9 22 0.00076 38.3 13.6 53 137-196 817-869 (1139)
254 4b4t_R RPN7, 26S proteasome re 78.5 30 0.001 32.5 12.9 119 112-232 110-236 (429)
255 4b4t_R RPN7, 26S proteasome re 77.9 25 0.00085 33.1 12.2 100 288-387 132-237 (429)
256 3esl_A Checkpoint serine/threo 77.0 29 0.001 28.6 10.6 59 335-393 92-150 (202)
257 1k1a_A B-cell lymphoma 3-encod 76.6 7.5 0.00026 32.7 7.6 88 139-230 13-102 (241)
258 2nsz_A Programmed cell death p 76.1 13 0.00045 28.2 7.9 69 325-395 10-80 (129)
259 2p58_C Putative type III secre 75.4 20 0.00069 25.8 8.5 78 267-352 22-99 (116)
260 4a1g_A Mitotic checkpoint seri 74.9 25 0.00085 27.6 9.3 53 149-202 82-134 (152)
261 2uwj_G Type III export protein 74.9 19 0.00066 25.8 7.6 78 267-352 21-98 (115)
262 3o48_A Mitochondria fission 1 71.9 31 0.0011 26.3 10.6 70 239-316 38-107 (134)
263 2wvi_A Mitotic checkpoint seri 69.9 29 0.001 27.6 8.7 54 149-203 77-130 (164)
264 2p58_C Putative type III secre 69.6 22 0.00075 25.6 6.9 78 302-388 22-99 (116)
265 3txn_A 26S proteasome regulato 69.2 72 0.0025 29.5 16.8 170 133-314 20-208 (394)
266 1zbp_A Hypothetical protein VP 67.3 13 0.00044 32.3 6.6 115 295-420 5-127 (273)
267 2uwj_G Type III export protein 67.2 21 0.00074 25.6 6.5 78 302-388 21-98 (115)
268 3eu9_A Huntingtin-interacting 66.8 5.4 0.00019 33.5 4.3 48 364-415 180-229 (240)
269 1wdy_A 2-5A-dependent ribonucl 65.9 16 0.00055 31.4 7.4 218 137-392 7-247 (285)
270 4a1g_A Mitotic checkpoint seri 64.3 23 0.0008 27.7 7.0 54 340-393 83-136 (152)
271 1zbp_A Hypothetical protein VP 64.2 20 0.00068 31.2 7.2 55 179-234 7-61 (273)
272 1wdy_A 2-5A-dependent ribonucl 64.1 27 0.00094 29.8 8.6 227 137-392 41-280 (285)
273 3ffl_A Anaphase-promoting comp 63.2 17 0.00058 29.0 6.0 24 395-418 124-147 (167)
274 3lpz_A GET4 (YOR164C homolog); 62.6 88 0.003 28.1 18.6 24 358-381 136-159 (336)
275 1k1a_A B-cell lymphoma 3-encod 61.6 30 0.001 28.8 8.2 54 175-228 12-67 (241)
276 3kea_A K1L; tropism, ANK repea 60.7 19 0.00067 31.4 6.9 185 176-395 35-225 (285)
277 3l6a_A Eukaryotic translation 60.5 70 0.0024 29.2 10.7 24 135-158 15-38 (364)
278 3o48_A Mitochondria fission 1 60.3 54 0.0019 25.0 10.1 71 129-203 37-110 (134)
279 2wvi_A Mitotic checkpoint seri 60.0 31 0.001 27.5 7.1 56 339-394 77-132 (164)
280 4fke_A Aminopeptidase N; zinc 59.8 1.7E+02 0.0058 30.5 17.0 161 245-420 690-858 (909)
281 3ffl_A Anaphase-promoting comp 57.1 43 0.0015 26.7 7.4 95 291-385 24-149 (167)
282 4aez_C MAD3, mitotic spindle c 56.8 36 0.0012 28.6 7.2 53 149-202 131-183 (223)
283 1y8m_A FIS1; mitochondria, unk 56.7 66 0.0023 24.8 11.4 71 129-203 36-109 (144)
284 3lvg_A Clathrin heavy chain 1; 56.5 1.7 5.9E-05 41.4 -0.9 218 130-378 81-324 (624)
285 1y8m_A FIS1; mitochondria, unk 54.1 73 0.0025 24.6 12.0 70 239-316 37-106 (144)
286 4fke_A Aminopeptidase N; zinc 51.1 2.3E+02 0.008 29.5 17.5 24 208-231 762-785 (909)
287 3hra_A Ankyrin repeat family p 51.0 24 0.0008 28.5 5.5 61 332-393 113-173 (201)
288 4aez_C MAD3, mitotic spindle c 48.8 56 0.0019 27.4 7.2 55 339-393 131-185 (223)
289 2xdt_A Endoplasmic reticulum a 46.6 2.7E+02 0.0093 28.9 16.2 143 244-406 683-836 (897)
290 3eu9_A Huntingtin-interacting 46.4 54 0.0019 27.0 7.3 53 329-386 181-235 (240)
291 3aji_A 26S proteasome non-ATPa 43.9 71 0.0024 26.2 7.6 21 368-392 179-199 (231)
292 3ljn_A Hypothetical protein; a 43.9 1.3E+02 0.0045 26.8 9.9 221 130-383 16-266 (364)
293 1ug3_A EIF4GI, eukaryotic prot 43.8 31 0.0011 31.2 5.4 24 135-158 14-37 (339)
294 3aji_A 26S proteasome non-ATPa 42.4 46 0.0016 27.4 6.1 41 366-410 144-186 (231)
295 3lpz_A GET4 (YOR164C homolog); 42.2 1.9E+02 0.0065 25.9 19.7 171 133-350 36-215 (336)
296 3b7b_A Euchromatic histone-lys 40.9 46 0.0016 27.6 5.9 19 368-386 217-235 (237)
297 2wpv_A GET4, UPF0363 protein Y 38.9 2.1E+02 0.0071 25.4 17.0 24 357-380 133-156 (312)
298 2wpv_A GET4, UPF0363 protein Y 38.6 2.1E+02 0.0072 25.4 20.1 171 133-350 34-216 (312)
299 3e3v_A Regulatory protein RECX 37.9 1.5E+02 0.0053 23.6 10.1 112 270-384 51-163 (177)
300 1n11_A Ankyrin; clathrin, BAND 37.6 1.2E+02 0.0041 28.0 8.8 19 138-156 50-68 (437)
301 2nsz_A Programmed cell death p 37.5 1.3E+02 0.0044 22.6 9.7 63 172-235 10-74 (129)
302 2ijq_A Hypothetical protein; s 37.1 1.3E+02 0.0043 23.8 7.2 53 298-350 43-103 (161)
303 4b4t_S RPN3, 26S proteasome re 36.1 3E+02 0.01 26.4 12.2 66 204-281 231-299 (523)
304 2d2s_A Exocyst complex compone 34.8 1.9E+02 0.0066 24.4 8.6 43 269-314 76-118 (235)
305 4ets_A Ferric uptake regulatio 33.9 1.4E+02 0.005 23.3 7.3 48 113-161 14-61 (162)
306 2ijq_A Hypothetical protein; s 33.6 1.7E+02 0.006 23.0 8.1 60 172-232 36-103 (161)
307 2ion_A PDCD4, programmed cell 33.6 1.7E+02 0.0057 22.7 9.7 26 171-196 11-36 (152)
308 4g8k_A 2-5A-dependent ribonucl 32.6 1.2E+02 0.0041 26.7 7.6 15 213-227 245-259 (337)
309 2keb_A DNA polymerase subunit 31.1 1.4E+02 0.0049 21.2 6.8 57 270-328 27-88 (101)
310 2fu4_A Ferric uptake regulatio 30.4 1.1E+02 0.0038 20.4 5.5 44 365-408 23-67 (83)
311 2b7e_A PRE-mRNA processing pro 30.2 42 0.0014 21.4 2.7 34 269-302 3-37 (59)
312 2d2s_A Exocyst complex compone 30.1 2.5E+02 0.0085 23.6 9.7 89 247-349 24-118 (235)
313 3jxi_A Vanilloid receptor-rela 29.8 17 0.00058 31.0 1.2 25 211-235 9-33 (260)
314 1n11_A Ankyrin; clathrin, BAND 29.4 91 0.0031 28.8 6.4 84 138-229 17-102 (437)
315 2xdt_A Endoplasmic reticulum a 29.1 5.1E+02 0.017 26.9 17.6 140 207-370 683-835 (897)
316 4b4t_S RPN3, 26S proteasome re 28.7 4E+02 0.014 25.6 13.5 66 287-352 231-300 (523)
317 2rg8_A Programmed cell death p 28.3 44 0.0015 26.6 3.3 26 172-197 13-38 (165)
318 3kae_A CDC27, possible protein 28.2 2.3E+02 0.008 22.7 7.6 55 178-232 71-142 (242)
319 2fe3_A Peroxide operon regulat 28.0 1.7E+02 0.0058 22.3 6.7 38 181-218 33-70 (145)
320 2r9g_A AAA ATPase, central reg 27.4 2.6E+02 0.0088 22.9 9.7 36 217-255 27-62 (204)
321 2xig_A Ferric uptake regulatio 26.9 1.7E+02 0.0059 22.5 6.6 42 177-218 34-75 (150)
322 3bge_A Predicted ATPase; struc 26.3 2.7E+02 0.0092 22.8 9.2 37 217-255 20-56 (201)
323 2o03_A Probable zinc uptake re 26.2 77 0.0026 23.8 4.3 46 364-409 16-61 (131)
324 3ygs_P Procaspase 9; apoptosis 26.0 1.7E+02 0.0059 20.5 5.9 72 344-423 26-97 (97)
325 3utm_A Tankyrase-1; tankyrase, 25.6 3.3E+02 0.011 23.6 11.4 17 140-156 29-45 (351)
326 2f6m_A Suppressor protein STP2 25.4 1.2E+02 0.0041 19.7 4.3 44 325-370 5-48 (65)
327 1ug3_A EIF4GI, eukaryotic prot 25.3 3.7E+02 0.012 24.0 10.5 148 172-347 14-166 (339)
328 2f8y_A Notch homolog 1, transl 25.2 2.4E+02 0.0084 22.5 7.8 50 175-228 28-79 (223)
329 3eiq_C Programmed cell death p 24.6 3.8E+02 0.013 24.2 9.2 26 207-232 220-245 (358)
330 2xig_A Ferric uptake regulatio 24.1 2.2E+02 0.0076 21.8 6.7 45 365-409 33-77 (150)
331 2rfa_A Transient receptor pote 23.8 2.9E+02 0.0099 22.3 8.4 183 139-347 7-219 (232)
332 2fu4_A Ferric uptake regulatio 23.7 1.7E+02 0.0057 19.5 6.2 58 278-336 8-66 (83)
333 3hra_A Ankyrin repeat family p 23.7 1.7E+02 0.0058 23.0 6.4 13 143-155 13-25 (201)
334 3kea_A K1L; tropism, ANK repea 23.4 1.6E+02 0.0053 25.3 6.4 13 298-310 169-181 (285)
335 3mwm_A ZUR, putative metal upt 23.3 73 0.0025 24.3 3.7 45 365-409 20-64 (139)
336 1mzb_A Ferric uptake regulatio 22.2 1.8E+02 0.0061 21.8 5.7 35 184-218 33-67 (136)
337 1wgl_A TOLL-interacting protei 21.7 1.5E+02 0.0052 18.7 4.2 22 371-392 36-57 (59)
338 4ets_A Ferric uptake regulatio 21.6 1.4E+02 0.0047 23.4 5.1 20 331-350 41-60 (162)
339 1mzb_A Ferric uptake regulatio 20.9 98 0.0034 23.4 4.0 14 338-351 34-47 (136)
340 3eyy_A Putative iron uptake re 20.7 1.6E+02 0.0055 22.5 5.2 33 186-218 34-66 (145)
341 2fe3_A Peroxide operon regulat 20.3 2.9E+02 0.0098 20.9 7.7 58 278-336 13-70 (145)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.3e-34 Score=281.30 Aligned_cols=215 Identities=14% Similarity=0.162 Sum_probs=174.1
Q ss_pred HHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH
Q 013010 187 EALATFYRMKQFRCRPDV-YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265 (451)
Q Consensus 187 ~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~ 265 (451)
.+..+.+++.+.+..+.. ..++.+|++|++.|++++|+++|++|.+.|+. ||..|||+||.+|++.+....... .
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~--pd~~tyn~Li~~c~~~~~~~~~~~--~ 83 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQ--LSQYHYNVLLYVCSLAEAATESSP--N 83 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHTTCCCCSSSSC--C
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CCHhHHHHHHHHHHhCCchhhhhh--c
Confidence 344455566665554443 34666777777777777777777777777754 777777777777776654322111 1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 013010 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM 345 (451)
Q Consensus 266 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 345 (451)
+.++.|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 16889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013010 346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406 (451)
Q Consensus 346 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 406 (451)
++|.+.|. .||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 164 ~~M~~~G~-~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 164 AHMVESEV-VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhcCC-CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999998 9999999999999999999999999999999999999999999999999875
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.4e-34 Score=280.05 Aligned_cols=208 Identities=14% Similarity=0.180 Sum_probs=164.7
Q ss_pred hHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---------
Q 013010 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN--------- 219 (451)
Q Consensus 149 ~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------- 219 (451)
..+..+.+.+.+++....| ...++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~sp-e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSP-EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CH-HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 3455666667666655433 335788888888888888888888888888888888889888888887654
Q ss_pred hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 013010 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299 (451)
Q Consensus 220 ~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 299 (451)
++.|.++|++|...|+. ||..||++||.+|++.| ++++|.++|++|.+.|+.||..|||++|.+|++
T Consensus 86 l~~A~~lf~~M~~~G~~--Pd~~tyn~lI~~~~~~g-----------~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~ 152 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVV--PNEATFTNGARLAVAKD-----------DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152 (501)
T ss_dssp HHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCccceehHHHHHHHH
Confidence 57788889999888864 89999999999999888 888888899999888888999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc
Q 013010 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371 (451)
Q Consensus 300 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 371 (451)
.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|++.+. .|+..||+.++..|+..
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~-~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR-QVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-SBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHHhcC
Confidence 999999999999998888999999999999999999999999999999988887 88888998888888764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=5.1e-25 Score=223.44 Aligned_cols=297 Identities=10% Similarity=-0.043 Sum_probs=265.9
Q ss_pred CCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh
Q 013010 102 YRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE 181 (451)
Q Consensus 102 ~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~ 181 (451)
.+..+...+++++|.++|+.+.+. +++..+++.++.+|.+.|++++|.++|+++.+.+.. +..+++.++.+|.+
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY---NLDVYPLHLASLHE 351 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CCTTHHHHHHHHHH
T ss_pred HHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHH
Confidence 356677888999999999998753 689999999999999999999999999999987632 56679999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh
Q 013010 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261 (451)
Q Consensus 182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~ 261 (451)
.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g------ 421 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD---PQFGPAWIGFAHSFAIEG------ 421 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHT------
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC------
Confidence 999999999999998643 4578999999999999999999999999998764 357889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341 (451)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 341 (451)
++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.+...|.+.|++++|
T Consensus 422 -----~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 422 -----EHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp -----CHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -----CHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 9999999999998763 4578899999999999999999999999998764 34789999999999999999999
Q ss_pred HHHHHHHHhc----CCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHH
Q 013010 342 IEMMRKMQNL----NHGVPT--SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415 (451)
Q Consensus 342 ~~~~~~m~~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 415 (451)
.++|+++.+. +. .|+ ..+|..+..+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.+.
T Consensus 495 ~~~~~~~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 495 INHFQNALLLVKKTQS-NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHHSCC-CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhcccc-chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999876 44 576 7899999999999999999999999998765 34789999999999999999999999
Q ss_pred HHHHHHhc
Q 013010 416 LRKRIRDG 423 (451)
Q Consensus 416 ~~~~~~~g 423 (451)
++++++..
T Consensus 573 ~~~~l~~~ 580 (597)
T 2xpi_A 573 LHESLAIS 580 (597)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99998654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=2.3e-24 Score=218.61 Aligned_cols=301 Identities=12% Similarity=0.011 Sum_probs=227.0
Q ss_pred CchhhhcCHHHHHHHHHHHhhcC--------------CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC----
Q 013010 104 DPQKVTLGLNKATEFYHWVERFF--------------DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE---- 165 (451)
Q Consensus 104 ~~~~~~~~~~~A~~~f~~~~~~~--------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---- 165 (451)
..+...|++++|+++|+.+.... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 44666778888888888432221 224457899999999999999999999999998765221
Q ss_pred ----------------------------------------------------------------CccHHhHHHHHHHHHh
Q 013010 166 ----------------------------------------------------------------LVTTSSVTCLIKVLGE 181 (451)
Q Consensus 166 ----------------------------------------------------------------~~~~~~~~~li~~~~~ 181 (451)
+.+..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 1234455555555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh
Q 013010 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261 (451)
Q Consensus 182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~ 261 (451)
.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|..+|+++.... +.+..+|+.++..|.+.|
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g------ 387 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH---PEKAVTWLAVGIYYLCVN------ 387 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSHHHHHHHHHHHHHTT------
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHhc------
Confidence 555555555555555433 2244555555555555555555555555555432 346667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341 (451)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 341 (451)
++++|.++|+++.+.. +.+..+|+.++.+|++.|++++|.++|+++.+.+ +.+..+|+.+..+|.+.|++++|
T Consensus 388 -----~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 388 -----KISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp -----CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred -----cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 8889999999888642 3357789999999999999999999999988764 34788999999999999999999
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCCchHHHH
Q 013010 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG----GSVPR--EYTYKLVCDALNAAEEPSLLDDG 415 (451)
Q Consensus 342 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~li~~~~~~g~~~~a~~~ 415 (451)
.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.+.
T Consensus 461 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 461 NEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998876 567889999999999999999999999999865 77887 78999999999999999999999
Q ss_pred HHHHHHhc
Q 013010 416 LRKRIRDG 423 (451)
Q Consensus 416 ~~~~~~~g 423 (451)
++++++.+
T Consensus 539 ~~~~~~~~ 546 (597)
T 2xpi_A 539 LNQGLLLS 546 (597)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99988654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=1.3e-19 Score=173.52 Aligned_cols=294 Identities=13% Similarity=0.006 Sum_probs=249.3
Q ss_pred CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010 104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183 (451)
Q Consensus 104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g 183 (451)
..+...|++++|++.|+.+.+. .+.+...|..+..++.+.|++++|.+.++++.+.+.. +...+..+...+...|
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD---LYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT---CTHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcc
Confidence 4466778899999999998754 2335567888999999999999999999998887532 4556778888888999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHH
Q 013010 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA 263 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~ 263 (451)
++++|.+.|+++.+.. +-+..+|+.+...+...|++++|...|+++.... |.+...|..+...+...|
T Consensus 150 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~-------- 217 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEAR-------- 217 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTT--------
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcC--------
Confidence 9999999999988753 3357889999999999999999999999998765 346788888999999998
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 013010 264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE 343 (451)
Q Consensus 264 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 343 (451)
++++|...|++..+.. +-+..++..+..++...|++++|.+.|+++.+.+ +.+..+|..+...|.+.|++++|.+
T Consensus 218 ---~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 292 (388)
T 1w3b_A 218 ---IFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp ---CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ---CHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7888888888887652 2357889999999999999999999999998863 2257889999999999999999999
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422 (451)
Q Consensus 344 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 422 (451)
.|+++.+.. +.+..++..+...+.+.|++++|.++++++.+.. +.+..++..+..++.+.|++++|.+.++++++.
T Consensus 293 ~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 293 CYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999876 6788999999999999999999999999998752 345788999999999999999999999998853
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.86 E-value=7.6e-19 Score=168.24 Aligned_cols=291 Identities=16% Similarity=0.112 Sum_probs=247.1
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV 185 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~ 185 (451)
+...++.++|..+++...+. .+.+...|..+...+.+.|++++|...|+++.+... .+..+|..+..++.+.|++
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~ 117 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP---DFIDGYINLAAALVAAGDM 117 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHSCS
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc---chHHHHHHHHHHHHHcCCH
Confidence 44567789999999888764 456778899999999999999999999999988752 2556789999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH
Q 013010 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265 (451)
Q Consensus 186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~ 265 (451)
++|.+.|+++.+.. +-+...+..+...+...|++++|.+.|+++.... |.+..+|..+...|.+.|
T Consensus 118 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g---------- 183 (388)
T 1w3b_A 118 EGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ---PNFAVAWSNLGCVFNAQG---------- 183 (388)
T ss_dssp SHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTT----------
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC----------
Confidence 99999999998753 2245667777788888999999999999998764 346788999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 013010 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEM 344 (451)
Q Consensus 266 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~ 344 (451)
++++|...|+++.+.. +.+...|..+...+...|++++|...+++..+. .| +..++..+...|...|++++|.+.
T Consensus 184 -~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 259 (388)
T 1w3b_A 184 -EIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDT 259 (388)
T ss_dssp -CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999999988753 335677888889999999999999999988775 34 578899999999999999999999
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010 345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422 (451)
Q Consensus 345 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 422 (451)
|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|.+.++++++.
T Consensus 260 ~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 260 YRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999875 4567789999999999999999999999998763 457889999999999999999999999988753
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=2.3e-18 Score=168.04 Aligned_cols=293 Identities=13% Similarity=0.013 Sum_probs=245.9
Q ss_pred chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC
Q 013010 105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL 184 (451)
Q Consensus 105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~ 184 (451)
.+...+++++|+.+|+.+.+. .+.+...+..+..++...|++++|...|+.+.+.+.. +..++..+..+|.+.|+
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD---FTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCC
Confidence 356678899999999999864 4557889999999999999999999999999998633 56789999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCH----HHHHHHH------------HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010 185 VNEALATFYRMKQFRCRPDV----YAYNVVI------------NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~~----~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li 248 (451)
+++|.+.|+++.+. .|+. ..+..+. ..+...|++++|...|+++.... +.+..++..+.
T Consensus 110 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~ 184 (450)
T 2y4t_A 110 LDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---VWDAELRELRA 184 (450)
T ss_dssp HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHH
Confidence 99999999999985 3543 5565554 44889999999999999998765 45889999999
Q ss_pred HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 013010 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNS 327 (451)
Q Consensus 249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ 327 (451)
.+|.+.| ++++|...|+++.+.. +.+..++..+..+|...|++++|.+.|+++.+. .| +...+..
T Consensus 185 ~~~~~~g-----------~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 250 (450)
T 2y4t_A 185 ECFIKEG-----------EPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAH 250 (450)
T ss_dssp HHHHHTT-----------CGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHCC-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHH
Confidence 9999999 7788888888887642 446789999999999999999999999999865 34 3445544
Q ss_pred H------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 013010 328 F------------IRYYSVVNEIDKAIEMMRKMQNLNHGVPT--SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393 (451)
Q Consensus 328 l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 393 (451)
+ ...|...|++++|...|+++.+.....|. ...|..+...+.+.|++++|.+.++++.+.. +.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~ 329 (450)
T 2y4t_A 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH
Confidence 4 78899999999999999999986521111 4478889999999999999999999988753 3367
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010 394 YTYKLVCDALNAAEEPSLLDDGLRKRIRD 422 (451)
Q Consensus 394 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 422 (451)
..|..+..+|...|+++.|.+.+++.++.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999853
No 8
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=5.6e-21 Score=193.73 Aligned_cols=120 Identities=10% Similarity=0.091 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhh---CCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010 203 DVYAYNVVINALCRVGNFNKARFLLEQMEL---PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279 (451)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~ 279 (451)
-..|||++|++||+.|++++|.++|++|.+ .|. .||++|||+||++||+.| ++++|.++|++|.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~--~PdvvTYNtLI~Glck~G-----------~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK--LLTLDMYNAVMLGWARQG-----------AFKELVYVLFMVK 192 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT--TCCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC--CCCHhHHHHHHHHHHhCC-----------CHHHHHHHHHHHH
Confidence 456777777777777777777777766543 353 377777777777777777 7777777777777
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013010 280 FKGFVPDVVAYNCLIDGCCKTYR-IERALELFDDMNKKGCIPNRVTYNSFIRYYSVV 335 (451)
Q Consensus 280 ~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 335 (451)
+.|+.||..|||++|.++|+.|+ .++|.++|++|.+.|+.||..||++++.++.+.
T Consensus 193 ~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 77777777777777777777776 366777777777777777777777777655443
No 9
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=190.12 Aligned_cols=152 Identities=11% Similarity=0.054 Sum_probs=131.6
Q ss_pred CCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh---cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF---KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315 (451)
Q Consensus 239 p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 315 (451)
--..|||+||++||+.| ++++|.++|.+|.+ .|+.||+.|||+||.+||+.|++++|.++|++|.+
T Consensus 125 ~~~~TynaLIdglcK~G-----------~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTD-----------QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45579999999999999 99999999988764 58999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--
Q 013010 316 KGCIPNRVTYNSFIRYYSVVNE-IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-- 392 (451)
Q Consensus 316 ~g~~p~~~t~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-- 392 (451)
.|+.||..|||+||.++++.|+ .++|.++|++|.+.|+ .||..+|+.++.++.+. .+++..+++ .-++.|+
T Consensus 194 ~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~-~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~ 267 (1134)
T 3spa_A 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGL-KLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQ 267 (1134)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTC-CSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCC
T ss_pred cCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-CCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCC
Confidence 9999999999999999999998 5889999999999999 99999999999877775 444444444 4456655
Q ss_pred ----HHHHHHHHHHHHhcC
Q 013010 393 ----EYTYKLVCDALNAAE 407 (451)
Q Consensus 393 ----~~t~~~li~~~~~~g 407 (451)
..|...|.+.|.+.+
T Consensus 268 ~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 268 LPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCCCCTTTHHHHCCCS
T ss_pred CcccccchHHHHHHHccCC
Confidence 556667777777666
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.82 E-value=2.5e-17 Score=160.66 Aligned_cols=271 Identities=13% Similarity=0.083 Sum_probs=229.5
Q ss_pred CCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 013010 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207 (451)
Q Consensus 128 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 207 (451)
-+.+...+..+...+.+.|++++|..+|+.+.+... .+..+|..+..+|...|++++|...|+++.+.+ +.+..++
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 97 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP---DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAAR 97 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 345677899999999999999999999999998752 367789999999999999999999999998864 3468899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCH---HHHHHHHHH------------HHhcCCchhhhHHHHHHHHHHH
Q 013010 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDV---YTYTILISS------------YCKYGMQTGCRKAIRRRIWEAN 272 (451)
Q Consensus 208 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~---~~~~~li~~------------~~~~g~~~~~~~~~~~~~~~a~ 272 (451)
..+..+|.+.|++++|...|+++.... +.+. .++..+... +.+.| ++++|.
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------~~~~A~ 163 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSN---PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG-----------DYTAAI 163 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------CHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CHHHHH
Confidence 999999999999999999999999865 2344 566666444 77777 899999
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 273 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
..|+++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.+..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998753 4477889999999999999999999999988763 3468999999999999999999999999999865
Q ss_pred CCCCChhhHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCCchHHHH
Q 013010 353 HGVPTSSSYTPI------------IHALCEAGRVLEARDFLAELVDGGSVPR-----EYTYKLVCDALNAAEEPSLLDDG 415 (451)
Q Consensus 353 ~~~p~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~a~~~ 415 (451)
+.+...+..+ ...|.+.|++++|.++|+++.+. .|+ ...|..+..++.+.|+++.|.+.
T Consensus 242 --p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 242 --QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3445555555 78899999999999999999874 354 45788999999999999999999
Q ss_pred HHHHHHh
Q 013010 416 LRKRIRD 422 (451)
Q Consensus 416 ~~~~~~~ 422 (451)
+.+.++.
T Consensus 318 ~~~a~~~ 324 (450)
T 2y4t_A 318 CSEVLQM 324 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998854
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=1.4e-15 Score=143.08 Aligned_cols=293 Identities=12% Similarity=-0.009 Sum_probs=242.8
Q ss_pred chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC
Q 013010 105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL 184 (451)
Q Consensus 105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~ 184 (451)
.+...+++++|+..|+.+.+. .+.+...+..+...+...|++++|...++...+.... +...+..+...+...|+
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD---FTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cchHHHHHHHHHHHcCC
Confidence 355678899999999999864 3456788999999999999999999999999987532 56789999999999999
Q ss_pred HHHHHHHHHHHhhCCCCC----CHHHHHHH------------HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010 185 VNEALATFYRMKQFRCRP----DVYAYNVV------------INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li 248 (451)
+++|...|++..+. .| +...+..+ ...+...|++++|..+++++.... +.+..++..+.
T Consensus 87 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~ 161 (359)
T 3ieg_A 87 LDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VWDAELRELRA 161 (359)
T ss_dssp HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCchHHHHHHH
Confidence 99999999999885 35 44445444 578889999999999999998775 35788999999
Q ss_pred HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-
Q 013010 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS- 327 (451)
Q Consensus 249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~- 327 (451)
..+...| ++++|...+++..+.. +.+..++..+...+...|++++|.+.++...+.. +.+..++..
T Consensus 162 ~~~~~~~-----------~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (359)
T 3ieg_A 162 ECFIKEG-----------EPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHY 228 (359)
T ss_dssp HHHHHTT-----------CHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHCC-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHH
Confidence 9999999 9999999999998753 4567889999999999999999999999988763 223443332
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 013010 328 -----------FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS----SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392 (451)
Q Consensus 328 -----------li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 392 (451)
+...+.+.|++++|...+++..+... .+. ..+..+...+...|++++|.+.+++..+.. +.+
T Consensus 229 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~ 305 (359)
T 3ieg_A 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP--SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDN 305 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccc
Confidence 25668899999999999999998752 233 235567788999999999999999998753 336
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010 393 EYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423 (451)
Q Consensus 393 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g 423 (451)
..++..+..++...|+++.|.+.+++.++..
T Consensus 306 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 306 VNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999998644
No 12
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1e-16 Score=151.84 Aligned_cols=290 Identities=12% Similarity=-0.018 Sum_probs=227.4
Q ss_pred hhhcCHHHHHH-HHHHHhhcCCCCC--CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010 107 KVTLGLNKATE-FYHWVERFFDFFH--NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183 (451)
Q Consensus 107 ~~~~~~~~A~~-~f~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g 183 (451)
...+++++|++ .|+.......-.| +...+..+...+.+.|++++|...++++.+... .+..+|..+..++...|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP---KHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT---TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCc
Confidence 33456778887 7775543211112 356688899999999999999999999998753 36678999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH---------------HH
Q 013010 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI---------------LI 248 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~---------------li 248 (451)
++++|...|+++.+.. +.+..++..+...|...|++++|...|+++..... .+...+.. .+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP---AYAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST---TTGGGCC---------------CTT
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CcHHHHHHHHHHhhhhcccHHHHHH
Confidence 9999999999998854 34788999999999999999999999999987652 22222221 23
Q ss_pred HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013010 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327 (451)
Q Consensus 249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 327 (451)
..+...| ++++|...|+++.+..-. ++..++..+...|...|++++|...++++.+.. +.+..++..
T Consensus 189 ~~~~~~~-----------~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 256 (368)
T 1fch_A 189 GSLLSDS-----------LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNK 256 (368)
T ss_dssp HHHHHHH-----------HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHhhcc-----------cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 3333666 999999999999875321 147889999999999999999999999988763 336789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----------CCHHHHH
Q 013010 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV----------PREYTYK 397 (451)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------p~~~t~~ 397 (451)
+...|...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+..-. ....+|.
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 9999999999999999999999875 567889999999999999999999999998753211 1268899
Q ss_pred HHHHHHHhcCCCchHHHHHH
Q 013010 398 LVCDALNAAEEPSLLDDGLR 417 (451)
Q Consensus 398 ~li~~~~~~g~~~~a~~~~~ 417 (451)
.+..+|...|+.+.+..+..
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHhCChHhHHHhHH
Confidence 99999999999999987766
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=9.4e-16 Score=142.64 Aligned_cols=281 Identities=10% Similarity=-0.055 Sum_probs=213.1
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC-C
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG-L 184 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g-~ 184 (451)
+...+++++|+++|+.+.+. .+.+...+..++..+...|++++|..+++++.+.... +...|..+...+...| +
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS---NPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STHHHHHHHHHHHHSCSC
T ss_pred HHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHhhhh
Confidence 44457788899888888764 3345566777778888888999999988888886522 5567888888888888 8
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHH
Q 013010 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~ 264 (451)
+++|.+.|++..+.. +.+...|..+...+...|++++|...|++..... +.+..++..+...|...|
T Consensus 107 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~--------- 173 (330)
T 3hym_B 107 NEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLTN--------- 173 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHh---------
Confidence 888999888888754 3357778888888888899999999888887764 235567777888888888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcC
Q 013010 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG--------CIPNRVTYNSFIRYYSVVN 336 (451)
Q Consensus 265 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~t~~~li~~~~~~g 336 (451)
++++|...+++..+.. +.+..++..+...+...|++++|...+++..+.. ...+..++..+...|...|
T Consensus 174 --~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 174 --NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp --CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred --hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 8888888888887653 3456778888888888899999988888876531 1234678888888888889
Q ss_pred CHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCCc
Q 013010 337 EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL-NAAEEPS 410 (451)
Q Consensus 337 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~-~~~g~~~ 410 (451)
++++|...+++..+.. +.+...+..+...|.+.|++++|.+.+++..+.. +.+...+..+..++ ...|+.+
T Consensus 251 ~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 251 KYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999998888765 4567788888888888899999998888877643 22566777777777 4555554
No 14
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=2.1e-16 Score=149.85 Aligned_cols=265 Identities=11% Similarity=-0.014 Sum_probs=215.8
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+...+..+...+.+.|++++|...|+.+.+... .+..+|..+...|...|++++|...|+++.+.. +.+..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP---GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 455688899999999999999999999998763 267789999999999999999999999998853 3468899999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCC-----------HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPD-----------VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~-----------~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~ 279 (451)
..+|...|++++|...|+++.+.. |+ ...+..+...+...| ++++|...|+++.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al 204 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN----PKYKYLVKNKKGSPGLTRRMSKSPVDSS-----------VLEGVKELYLEAA 204 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC----HHHHCC-------------------CCH-----------HHHHHHHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC----ccchHHHhhhccchHHHHHHHHHHhhhh-----------hHHHHHHHHHHHH
Confidence 999999999999999999998754 32 233445577888888 9999999999998
Q ss_pred hcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCh
Q 013010 280 FKGFV-PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358 (451)
Q Consensus 280 ~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 358 (451)
+..-. ++..++..+...|...|++++|.+.|++..+.. +.+..+|..+...|...|++++|...|+++.+.. +.+.
T Consensus 205 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~ 281 (365)
T 4eqf_A 205 HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFI 281 (365)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCch
Confidence 76321 157889999999999999999999999988763 3368899999999999999999999999999875 4568
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CC--------CCHHHHHHHHHHHHhcCCCchHHHHHH
Q 013010 359 SSYTPIIHALCEAGRVLEARDFLAELVDGG---SV--------PREYTYKLVCDALNAAEEPSLLDDGLR 417 (451)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~--------p~~~t~~~li~~~~~~g~~~~a~~~~~ 417 (451)
.++..+...|.+.|++++|.+.|++..+.. .. .+...|..+..++...|+.+.+.+...
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 899999999999999999999999987532 11 136789999999999999987665544
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6.3e-16 Score=153.18 Aligned_cols=294 Identities=9% Similarity=-0.023 Sum_probs=244.0
Q ss_pred CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010 104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183 (451)
Q Consensus 104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g 183 (451)
+.+...+++++|+..|+.+... .|+...|..+..++.+.|++++|...++.+.+.+. .+..+|..+..+|...|
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP---DYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHHHh
Confidence 3456678899999999999875 37899999999999999999999999999998763 36678999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCC------------------------------------------------------------
Q 013010 184 LVNEALATFYRMKQFRCRPD------------------------------------------------------------ 203 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~------------------------------------------------------------ 203 (451)
++++|...|+++.+.+- ++
T Consensus 88 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99999999999876541 11
Q ss_pred -------------------HHHHHHHHHHHHh---cCChHHHHHHHHHhhh-----CCCC--C----CCCHHHHHHHHHH
Q 013010 204 -------------------VYAYNVVINALCR---VGNFNKARFLLEQMEL-----PGFR--C----PPDVYTYTILISS 250 (451)
Q Consensus 204 -------------------~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~--~----~p~~~~~~~li~~ 250 (451)
...+......+.. .|++++|..+|+++.. .... . +.+..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 2233333333333 7999999999999987 3111 0 1245678889999
Q ss_pred HHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013010 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330 (451)
Q Consensus 251 ~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 330 (451)
+...| ++++|...|+++.+.. |+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 247 ~~~~~-----------~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 247 KFLKN-----------DPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHSS-----------CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHCC-----------CHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 99999 8999999999998764 447888999999999999999999999998763 336788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCc
Q 013010 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410 (451)
Q Consensus 331 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 410 (451)
.|...|++++|...+++..+.. +.+...+..+...|...|++++|.++++++.+.. +.+...+..+...+...|+++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999876 4567789999999999999999999999998753 235678899999999999999
Q ss_pred hHHHHHHHHHH
Q 013010 411 LLDDGLRKRIR 421 (451)
Q Consensus 411 ~a~~~~~~~~~ 421 (451)
.|.+.+.+.++
T Consensus 390 ~A~~~~~~a~~ 400 (514)
T 2gw1_A 390 KALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.2e-15 Score=140.16 Aligned_cols=275 Identities=10% Similarity=-0.084 Sum_probs=231.4
Q ss_pred CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 013010 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA 206 (451)
Q Consensus 127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 206 (451)
+.+.+...+..+...+...|++++|.++++.+.+.... +...+..++..+...|++++|..+++++.+.. +.+...
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 92 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF---HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVS 92 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHH
Confidence 34557778888999999999999999999999987633 44567788899999999999999999998853 346788
Q ss_pred HHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 013010 207 YNVVINALCRVG-NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285 (451)
Q Consensus 207 ~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 285 (451)
|..+...+...| ++++|...|++..... +.+..+|..+...+...| ++++|...+++..+.. +.
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~-~~ 157 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVES-----------EHDQAMAAYFTAAQLM-KG 157 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHT-TT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhc-cc
Confidence 999999999999 9999999999998775 346788999999999999 8999999999988753 23
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------CCCh
Q 013010 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-------VPTS 358 (451)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------~p~~ 358 (451)
+...+..+...|...|++++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+.... ..+.
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 45677778999999999999999999998764 336789999999999999999999999998875311 2335
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422 (451)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 422 (451)
..+..+...|...|++++|.+.+++..+.. +.+...+..+..++...|+++.|.+.+++.++.
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 688999999999999999999999998754 235778999999999999999999999988753
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=1.8e-15 Score=140.57 Aligned_cols=267 Identities=10% Similarity=-0.020 Sum_probs=216.8
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+...+..+...+...|++++|..+++++.+.... +..++..+...+...|++++|...|+++.+.. +.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence 3445667888888999999999999999887532 66788889999999999999999999998853 3467888999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH--------------HH-HHHhcCCchhhhHHHHHHHHHHHHHH
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL--------------IS-SYCKYGMQTGCRKAIRRRIWEANHLF 275 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l--------------i~-~~~~~g~~~~~~~~~~~~~~~a~~~~ 275 (451)
...|...|++++|.+.++++..... .+...+..+ .. .+...| ++++|...+
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~ 161 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQP---QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN-----------EYRECRTLL 161 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTST---TTTTC--------------------CCTTSHH-----------HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC---ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc-----------cHHHHHHHH
Confidence 9999999999999999999887642 222233222 11 244445 899999999
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 013010 276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV 355 (451)
Q Consensus 276 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 355 (451)
+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...|...|++++|...++++.+.. +
T Consensus 162 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~ 237 (327)
T 3cv0_A 162 HAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--P 237 (327)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C
Confidence 9988753 3467889999999999999999999999988763 3367889999999999999999999999998876 4
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 013010 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP-----------REYTYKLVCDALNAAEEPSLLDDGLRKR 419 (451)
Q Consensus 356 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~li~~~~~~g~~~~a~~~~~~~ 419 (451)
.+...+..+...|...|++++|.+.+++..+..... +...|..+..++.+.|+.+.|...+++.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 567889999999999999999999999988643221 4678999999999999999888777643
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.71 E-value=8.4e-15 Score=145.02 Aligned_cols=310 Identities=11% Similarity=-0.066 Sum_probs=212.2
Q ss_pred chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC------------------
Q 013010 105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL------------------ 166 (451)
Q Consensus 105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~------------------ 166 (451)
.+...+++++|+..|+.+.+. .+.+...+..+..++.+.|++++|...|+.+...+....
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (514)
T 2gw1_A 48 CYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSK 125 (514)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHH
Confidence 355667788888888877754 244566777788888888888888888877766542110
Q ss_pred ----------------------------------------------------------ccHHhHHHHHHHHHh---cCCH
Q 013010 167 ----------------------------------------------------------VTTSSVTCLIKVLGE---EGLV 185 (451)
Q Consensus 167 ----------------------------------------------------------~~~~~~~~li~~~~~---~g~~ 185 (451)
.+...+......+.. .|++
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
T 2gw1_A 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205 (514)
T ss_dssp HTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH
Confidence 002222222222332 6777
Q ss_pred HHHHHHHHHHhh-----CCC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH
Q 013010 186 NEALATFYRMKQ-----FRC--------RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252 (451)
Q Consensus 186 ~~A~~~~~~m~~-----~g~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~ 252 (451)
++|..+|+++.+ ..- +.+..++..+...+...|++++|...|+++.... |+..++..+...|.
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~l~~~~~ 281 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF----PRVNSYIYMALIMA 281 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----ccHHHHHHHHHHHH
Confidence 777777777766 211 1234566666777777777777777777776654 34666667777777
Q ss_pred hcCCchhhhHHHH-----------------------HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 013010 253 KYGMQTGCRKAIR-----------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL 309 (451)
Q Consensus 253 ~~g~~~~~~~~~~-----------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 309 (451)
..|+++.+.+.+. +++++|...+++..+.. +.+..++..+...+...|++++|...
T Consensus 282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 360 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETL 360 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7776655554332 36778888888877653 23556777788888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHHHH---cCCHHHHHHHHH
Q 013010 310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT----SSSYTPIIHALCE---AGRVLEARDFLA 382 (451)
Q Consensus 310 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~l~~ 382 (451)
++.+.+.. +.+..++..+...|...|++++|...++++.+.....++ ...+..+...+.. .|++++|.+.++
T Consensus 361 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 439 (514)
T 2gw1_A 361 FSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE 439 (514)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred HHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 88877652 225677888888888888888888888887765421222 3378888888888 888999998888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010 383 ELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423 (451)
Q Consensus 383 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g 423 (451)
+..+.. +.+..++..+...+.+.|+++.|.+.+++.++..
T Consensus 440 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 440 KASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 887643 2356778888888889999888888888887543
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.71 E-value=5.2e-14 Score=132.21 Aligned_cols=268 Identities=12% Similarity=0.069 Sum_probs=222.3
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+...+..+...+...|++++|...|+.+.+.... +..++..+...+...|++++|...|+++.+.. +-+...|..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 3456778889999999999999999999987532 56789999999999999999999999998853 3367889999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCC----CHHHHHHH------------HHHHHhcCCchhhhHHHHHHHHHHHHH
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPP----DVYTYTIL------------ISSYCKYGMQTGCRKAIRRRIWEANHL 274 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p----~~~~~~~l------------i~~~~~~g~~~~~~~~~~~~~~~a~~~ 274 (451)
...+...|++++|...|++..+.. | +...+..+ ...+...| ++++|...
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~ 142 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSN----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGA-----------DYTAAITF 142 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------CHHHHHHH
Confidence 999999999999999999998765 4 44455444 57788888 89999999
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 013010 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG 354 (451)
Q Consensus 275 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 354 (451)
++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...|...|++++|...+++..+..
T Consensus 143 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 218 (359)
T 3ieg_A 143 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-- 218 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 99988753 4467888999999999999999999999998763 3478899999999999999999999999999875
Q ss_pred CCChhhHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCCCchHHHHHH
Q 013010 355 VPTSSSYT------------PIIHALCEAGRVLEARDFLAELVDGGSVPR-E----YTYKLVCDALNAAEEPSLLDDGLR 417 (451)
Q Consensus 355 ~p~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~li~~~~~~g~~~~a~~~~~ 417 (451)
+.+...+. .+...+.+.|++++|.+.+++..+.. |+ . ..+..+..++...|+++.|.+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 296 (359)
T 3ieg_A 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296 (359)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 33344333 22566899999999999999998754 33 2 235567889999999999999999
Q ss_pred HHHHhc
Q 013010 418 KRIRDG 423 (451)
Q Consensus 418 ~~~~~g 423 (451)
+.++..
T Consensus 297 ~~~~~~ 302 (359)
T 3ieg_A 297 EVLQME 302 (359)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998643
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=4.7e-15 Score=140.41 Aligned_cols=260 Identities=12% Similarity=-0.029 Sum_probs=213.3
Q ss_pred CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010 104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183 (451)
Q Consensus 104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g 183 (451)
..+...+++++|+..|+.+.+. .+.+...+..+...+.+.|++++|...++++.+.+. .+..++..+...|...|
T Consensus 72 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 72 LRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP---DNQTALMALAVSFTNES 146 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcC
Confidence 3456678899999999999864 355778899999999999999999999999998863 26778999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHH---------------HHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010 184 LVNEALATFYRMKQFRCRPDVYAYNV---------------VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li 248 (451)
++++|.+.|+++.+... .+...+.. .+..+...|++++|...|+++...... .++..++..+.
T Consensus 147 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~l~ 224 (368)
T 1fch_A 147 LQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLG 224 (368)
T ss_dssp CHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT-SCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcC-cccHHHHHHHH
Confidence 99999999999988542 22222221 244445899999999999999876521 11588999999
Q ss_pred HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF 328 (451)
Q Consensus 249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 328 (451)
..|.+.| ++++|...|++..+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus 225 ~~~~~~g-----------~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l 291 (368)
T 1fch_A 225 VLFNLSG-----------EYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNL 291 (368)
T ss_dssp HHHHHTT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHcC-----------CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 9999999 8999999999988753 3457889999999999999999999999988763 3368899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---------CChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 013010 329 IRYYSVVNEIDKAIEMMRKMQNLNHGV---------PTSSSYTPIIHALCEAGRVLEARDFLAE 383 (451)
Q Consensus 329 i~~~~~~g~~~~A~~~~~~m~~~~~~~---------p~~~~~~~li~~~~~~g~~~~A~~l~~~ 383 (451)
...|.+.|++++|...|+++.+..... ....+|..+..+|...|+.++|..++.+
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 999999999999999999988754211 1167899999999999999999988763
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.69 E-value=1.2e-14 Score=145.03 Aligned_cols=295 Identities=11% Similarity=0.051 Sum_probs=232.1
Q ss_pred CCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc
Q 013010 103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE 182 (451)
Q Consensus 103 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~ 182 (451)
+..+...+++++|++.|+.+... .+.+...+..+..++.+.|++++|.+.+++..+.+. .+..++..+..++...
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP---DHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHc
Confidence 34466678889999999999865 345788899999999999999999999999998863 2677899999999999
Q ss_pred CCHHHHHHHHHHHhhCCC------------------------------------CCCHH---------------------
Q 013010 183 GLVNEALATFYRMKQFRC------------------------------------RPDVY--------------------- 205 (451)
Q Consensus 183 g~~~~A~~~~~~m~~~g~------------------------------------~p~~~--------------------- 205 (451)
|++++|...|+.+....- .|+..
T Consensus 107 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp TCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 999999999964422110 01111
Q ss_pred ---------HHHHHHHHHH--------hcCChHHHHHHHHHhhhCCCCCCCCH-------HHHHHHHHHHHhcCCchhhh
Q 013010 206 ---------AYNVVINALC--------RVGNFNKARFLLEQMELPGFRCPPDV-------YTYTILISSYCKYGMQTGCR 261 (451)
Q Consensus 206 ---------~~~~li~~~~--------~~g~~~~a~~~~~~m~~~g~~~~p~~-------~~~~~li~~~~~~g~~~~~~ 261 (451)
....+...+. ..|++++|..+|+++.+... .+. .++..+...+...|
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~g~~~~~~~------ 257 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT---VDDPLRENAALALCYTGIFHFLKN------ 257 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C---CCHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC---CcchhhHHHHHHHHHHHHHHHhcc------
Confidence 1111111111 11478899999999987652 232 35666677777888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341 (451)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 341 (451)
++++|...+++..+. .|+..++..+...+...|++++|.+.++.+.+.. +.+..+|..+...|...|++++|
T Consensus 258 -----~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 258 -----NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp -----CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -----cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 889999999999875 4667888889999999999999999999988764 23688899999999999999999
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 342 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
...+++..+.. +.+...+..+...|...|++++|.++++++.+.. +.+...+..+...+...|+++.|.+.+.+.++
T Consensus 330 ~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 330 KEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999876 4566789999999999999999999999998763 33567889999999999999999999999875
Q ss_pred h
Q 013010 422 D 422 (451)
Q Consensus 422 ~ 422 (451)
.
T Consensus 407 ~ 407 (537)
T 3fp2_A 407 L 407 (537)
T ss_dssp H
T ss_pred c
Confidence 4
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=5.8e-15 Score=139.82 Aligned_cols=259 Identities=11% Similarity=-0.063 Sum_probs=208.6
Q ss_pred CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010 104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183 (451)
Q Consensus 104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g 183 (451)
..+...+++++|+..|+.+... .+.+...|..+...+.+.|++++|...|++..+... .+..+|..+...|...|
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP---NNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHccc
Confidence 3466678899999999999865 355788999999999999999999999999998753 25778999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH
Q 013010 184 LVNEALATFYRMKQFRCRPD-----------VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC 252 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~ 252 (451)
++++|...|+++.+.. |+ ...+..+...+...|++++|..+|+++....-. .++..++..+...|.
T Consensus 148 ~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 148 HQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD-MIDPDLQTGLGVLFH 224 (365)
T ss_dssp CHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS-SCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-ccCHHHHHHHHHHHH
Confidence 9999999999998742 32 233445678899999999999999999887521 126889999999999
Q ss_pred hcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013010 253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332 (451)
Q Consensus 253 ~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 332 (451)
..| ++++|...|++..+.. +.+..+|+.+..+|...|++++|...|++..+.. +.+..++..+...|
T Consensus 225 ~~g-----------~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 225 LSG-----------EFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISC 291 (365)
T ss_dssp HHT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HCC-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Confidence 999 9999999999988753 3467899999999999999999999999988763 23588999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC----------CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 013010 333 SVVNEIDKAIEMMRKMQNLNHG----------VPTSSSYTPIIHALCEAGRVLEARDFLAE 383 (451)
Q Consensus 333 ~~~g~~~~A~~~~~~m~~~~~~----------~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 383 (451)
...|++++|...|+++.+.... ..+...|..+..++...|+.+.|.++..+
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999998875421 11367899999999999999988887654
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=1.6e-14 Score=134.09 Aligned_cols=257 Identities=15% Similarity=-0.008 Sum_probs=211.2
Q ss_pred chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC
Q 013010 105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL 184 (451)
Q Consensus 105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~ 184 (451)
.+...+++++|+.+|+.+.+. .+.+...+..+...+...|++++|...++++.+... .+..++..+...|...|+
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCC
Confidence 355678899999999999864 344778889999999999999999999999998752 256789999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 013010 185 VNEALATFYRMKQFRCRPDVYAYNVV--------------IN-ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~ 249 (451)
+++|.+.|+++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+..++..+..
T Consensus 105 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~ 180 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN---PNDAQLHASLGV 180 (327)
T ss_dssp HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC---CCCHHHHHHHHH
Confidence 999999999998753 1222333332 22 3677889999999999998775 357889999999
Q ss_pred HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 013010 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329 (451)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 329 (451)
.|...| ++++|...+++..+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 181 ~~~~~~-----------~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 247 (327)
T 3cv0_A 181 LYNLSN-----------NYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMA 247 (327)
T ss_dssp HHHHTT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHhc-----------cHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 999999 8999999999988753 3457889999999999999999999999988763 23688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC-----------ChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010 330 RYYSVVNEIDKAIEMMRKMQNLNHGVP-----------TSSSYTPIIHALCEAGRVLEARDFLAEL 384 (451)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~m~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m 384 (451)
..|...|++++|.+.+++..+... .. +...|..+..++.+.|+.++|..++++.
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999887652 11 4778999999999999999999988643
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=6.4e-14 Score=128.40 Aligned_cols=245 Identities=12% Similarity=0.079 Sum_probs=151.8
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCH--HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHH
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNE--MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN 186 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~ 186 (451)
.|...+|++.++... ...|+. .....+..+|...|+++.|...++. . . +++..++..+...+...|+.+
T Consensus 12 ~g~y~~ai~~~~~~~---~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~--~-~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 12 IGSYQQCINEAQRVK---PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S--S-APELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp TTCHHHHHHHHHHSC---CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T--S-CHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHhcc---cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c--C-ChhHHHHHHHHHHHcCCCcHH
Confidence 456677777665543 233332 2334456677777777777765533 1 1 235556666777777777777
Q ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH
Q 013010 187 EALATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265 (451)
Q Consensus 187 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~ 265 (451)
+|++.++++...+..| +...+..+..++...|++++|++.+++ + .+..++..+...|.+.|
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~----~~~~~~~~l~~~~~~~g---------- 144 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----G----DSLECMAMTVQILLKLD---------- 144 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----C----CSHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----C----CCHHHHHHHHHHHHHCC----------
Confidence 7777777776655444 344455555667777777777777765 1 46667777777777777
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010 266 RRIWEANHLFRLMLFKGFVPDVVAY---NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI 342 (451)
Q Consensus 266 ~~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 342 (451)
++++|.+.|+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.
T Consensus 145 -~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 145 -RLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp -CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -CHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777776552 443211 12223333446777777777777665 2346667777777777777777777
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHH-HHHHHHHHHh
Q 013010 343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE-ARDFLAELVD 386 (451)
Q Consensus 343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~ 386 (451)
..+++..+.. +-+..++..++..+...|+.++ +.++++++.+
T Consensus 221 ~~l~~al~~~--p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 221 GVLQEALDKD--SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7777766655 4456667777777777777654 4566666665
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.64 E-value=8.5e-14 Score=127.58 Aligned_cols=253 Identities=10% Similarity=-0.006 Sum_probs=202.9
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 013010 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221 (451)
Q Consensus 142 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 221 (451)
....|++..|...++...... |.........+.++|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 445799999999988765432 2222345567789999999999999876542 3578889999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 013010 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301 (451)
Q Consensus 222 ~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 301 (451)
+|.+.++++...+.. |-+...+..+...|...| ++++|++.+++ +.+...+..+...+.+.|
T Consensus 83 ~A~~~l~~ll~~~~~-P~~~~~~~~la~~~~~~g-----------~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g 144 (291)
T 3mkr_A 83 AIVAELDREMSRSVD-VTNTTFLLMAASIYFYDQ-----------NPDAALRTLHQ------GDSLECMAMTVQILLKLD 144 (291)
T ss_dssp HHHHHHHHHHHSCCC-CSCHHHHHHHHHHHHHTT-----------CHHHHHHHHTT------CCSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccC-CCCHHHHHHHHHHHHHCC-----------CHHHHHHHHhC------CCCHHHHHHHHHHHHHCC
Confidence 999999999876532 246667777889999999 89999999987 457888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 013010 302 RIERALELFDDMNKKGCIPNRVTY---NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378 (451)
Q Consensus 302 ~~~~a~~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 378 (451)
++++|.+.++.+.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.
T Consensus 145 ~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 145 RLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999998874 654322 223344455699999999999999985 678889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHhc
Q 013010 379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSL-LDDGLRKRIRDG 423 (451)
Q Consensus 379 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-a~~~~~~~~~~g 423 (451)
+.|++.++.. +-+..++..++..+...|+.++ +.+.+++.++..
T Consensus 221 ~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 221 GVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999988753 2367789999999999999975 567777777544
No 26
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.63 E-value=2.2e-13 Score=135.67 Aligned_cols=232 Identities=12% Similarity=-0.035 Sum_probs=174.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~ 251 (451)
+..+...+...|++++|...|++..+. .|+..+|..+...+...|++++|...|++..... +.+..+|..+...|
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN---PEYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC---CCCHHHHHHHHHHH
Confidence 444556666677777888887777764 4556777777777777788888888887777654 24667777777788
Q ss_pred HhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013010 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331 (451)
Q Consensus 252 ~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 331 (451)
...| ++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 321 ~~~~-----------~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 321 FILQ-----------DYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI 387 (537)
T ss_dssp HHTT-----------CHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HhcC-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 8877 8888888888887653 2345778888888999999999999999887763 3356788888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC----ChhhHHHHHHHHHHc----------CCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010 332 YSVVNEIDKAIEMMRKMQNLNHGVP----TSSSYTPIIHALCEA----------GRVLEARDFLAELVDGGSVPREYTYK 397 (451)
Q Consensus 332 ~~~~g~~~~A~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~p~~~t~~ 397 (451)
|...|++++|...++++.+.....+ ....+......+... |++++|...|++..+.. +.+...+.
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 466 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKI 466 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 9999999999999988776542111 112234445667777 99999999999888753 23567899
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHh
Q 013010 398 LVCDALNAAEEPSLLDDGLRKRIRD 422 (451)
Q Consensus 398 ~li~~~~~~g~~~~a~~~~~~~~~~ 422 (451)
.+..++.+.|+++.|.+.+++.++.
T Consensus 467 ~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 467 GLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988854
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.59 E-value=8.7e-15 Score=138.18 Aligned_cols=240 Identities=12% Similarity=0.032 Sum_probs=101.8
Q ss_pred hhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010 108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE 187 (451)
Q Consensus 108 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 187 (451)
..+++++|.++++.+. +..+|..|+.++.+.|++++|.+.|.+. .+..+|..++.++...|++++
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHH
Confidence 4566899999999874 2358999999999999999999999642 255579999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 013010 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267 (451)
Q Consensus 188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~ 267 (451)
|...++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...| .
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g-----------~ 137 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEK-----------M 137 (449)
T ss_dssp -------------------------------CHHHHTTTTT---------CC---------------------------C
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcC-----------C
Confidence 99977777663 4567889999999999999999887774 267789999999999999 8
Q ss_pred HHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013010 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347 (451)
Q Consensus 268 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 347 (451)
+++|..+|..+ ..|..+..++++.|++++|.+.+..+ -++.+|..++.+|...|+++.|......
T Consensus 138 yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 138 YDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp TTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88999999866 47899999999999999999999987 2789999999999999999999665543
Q ss_pred HHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013010 348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406 (451)
Q Consensus 348 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 406 (451)
+ ...+.....++..|.+.|++++|..+++...... +-....|+-|--+|++-
T Consensus 203 L------~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 203 I------VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp T------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred H------HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 2 2333445578889999999999999998877544 34456676666666655
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=7.7e-13 Score=118.16 Aligned_cols=225 Identities=11% Similarity=0.021 Sum_probs=168.8
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCC----HH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPD----VY 205 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~ 205 (451)
...+..+...+...|++++|...++...+.. . +..+|..+..++...|++++|...|++..+.. ..++ ..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K---DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3457777888888888888888888888776 2 45678888888888888888888888877632 1112 57
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 013010 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285 (451)
Q Consensus 206 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 285 (451)
+|..+...|...|++++|...|++..... |+. ..+.+.| ++++|...++.+.... +.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~-------~~~~~~~-----------~~~~a~~~~~~~~~~~-~~ 137 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEH----RTA-------DILTKLR-----------NAEKELKKAEAEAYVN-PE 137 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCH-------HHHHHHH-----------HHHHHHHHHHHHHHCC-HH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC----chh-------HHHHHHh-----------HHHHHHHHHHHHHHcC-cc
Confidence 78888888888888888888888887754 553 2345555 7788888888877642 23
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365 (451)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 365 (451)
+...+..+...+...|++++|.+.+++..+.. +.+..+|..+...|...|++++|...+++..+.. +.+...|..+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~ 214 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKA 214 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHH
Confidence 45667777778888888888888888877653 2357778888888888888888888888887765 45577788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 013010 366 HALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 366 ~~~~~~g~~~~A~~l~~~m~~ 386 (451)
..+.+.|++++|.+.+++..+
T Consensus 215 ~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 215 TAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888877764
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.57 E-value=4.8e-15 Score=139.90 Aligned_cols=221 Identities=16% Similarity=0.190 Sum_probs=93.9
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH
Q 013010 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK 222 (451)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 222 (451)
-+.|++++|.++++++. +..+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++
T Consensus 14 ~~~~~ld~A~~fae~~~--------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN--------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHH
Confidence 36788999999999982 2237999999999999999999999652 578899999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 013010 223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302 (451)
Q Consensus 223 a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 302 (451)
|.++++..++.. ++..+.+.++.+|.+.| +++++.++++ .|+..+|+.+...|...|.
T Consensus 80 Ai~yl~~ark~~----~~~~i~~~Li~~Y~Klg-----------~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~ 137 (449)
T 1b89_A 80 LVKYLQMARKKA----RESYVETELIFALAKTN-----------RLAELEEFIN-------GPNNAHIQQVGDRCYDEKM 137 (449)
T ss_dssp --------------------------------------------CHHHHTTTTT-------CC----------------C
T ss_pred HHHHHHHHHHhC----ccchhHHHHHHHHHHhC-----------CHHHHHHHHc-------CCcHHHHHHHHHHHHHcCC
Confidence 999888777642 56888999999999999 8888888774 3788899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 013010 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA 382 (451)
Q Consensus 303 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 382 (451)
+++|...|..+ ..|..+..++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|.....
T Consensus 138 yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 138 YDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp TTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred HHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999977 47999999999999999999999988 257999999999999999999966544
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 383 ELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 383 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
. +...+.-...++..|.+.|.++++...+++.+
T Consensus 202 ~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 202 H-----IVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp T-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred H-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3 33444556679999999999999999998876
No 30
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=3.3e-13 Score=121.99 Aligned_cols=251 Identities=13% Similarity=0.003 Sum_probs=186.3
Q ss_pred chhhhcCHHHHHHHHHHHhhcCCC--CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc
Q 013010 105 PQKVTLGLNKATEFYHWVERFFDF--FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE 182 (451)
Q Consensus 105 ~~~~~~~~~~A~~~f~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~ 182 (451)
+....+++++|+..|+.+.+.... +.+...+..+...+...|++++|...|++..+.... +..+|..+...|...
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHT
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHc
Confidence 344456789999999999864221 224667888999999999999999999999887532 567899999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhH
Q 013010 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262 (451)
Q Consensus 183 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~ 262 (451)
|++++|...|++..+.. +.+..++..+...|...|++++|...|+++.+.. |+.......+..+...|
T Consensus 91 ~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~------- 158 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----PNDPFRSLWLYLAEQKL------- 158 (275)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH-------
T ss_pred cCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHhc-------
Confidence 99999999999998853 3367889999999999999999999999998764 44444444455555556
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHH
Q 013010 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI--P-NRVTYNSFIRYYSVVNEID 339 (451)
Q Consensus 263 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p-~~~t~~~li~~~~~~g~~~ 339 (451)
++++|...+.+..... +++...+ .++..+...++.++|.+.+....+.... | +..++..+...|...|+++
T Consensus 159 ----~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 159 ----DEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp ----CHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ----CHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence 8889999998776642 3343444 4677777888888999999887655211 1 1577888888899999999
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 013010 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381 (451)
Q Consensus 340 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 381 (451)
+|...|++..... |+. +.....++...|++++|.+-+
T Consensus 233 ~A~~~~~~al~~~---p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 233 SATALFKLAVANN---VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTC---CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhCC---chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 9999999988754 322 223345667778888877665
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=9.6e-13 Score=117.53 Aligned_cols=230 Identities=13% Similarity=0.054 Sum_probs=196.1
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC----HHH
Q 013010 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD----VYT 243 (451)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~----~~~ 243 (451)
....|..+...+...|++++|...|++..+.. .+..+|..+..+|...|++++|...+++.........|+ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 34578889999999999999999999999877 788999999999999999999999999987654111122 588
Q ss_pred HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 013010 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV 323 (451)
Q Consensus 244 ~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 323 (451)
|..+...|...| ++++|...|++..+. .|+. ..+...|++++|.+.++.+.... +.+..
T Consensus 82 ~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 140 (258)
T 3uq3_A 82 FARIGNAYHKLG-----------DLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAE 140 (258)
T ss_dssp HHHHHHHHHHTT-----------CHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHH
T ss_pred HHHHHHHHHHcc-----------cHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHH
Confidence 999999999999 899999999998875 3442 45677889999999999988763 22567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013010 324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403 (451)
Q Consensus 324 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 403 (451)
.+..+...|...|++++|...+++..+.. +.+...|..+...|...|++++|.+.+++..+.. +.+...|..+..++
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence 78889999999999999999999999876 5678899999999999999999999999998754 33578899999999
Q ss_pred HhcCCCchHHHHHHHHHHhc
Q 013010 404 NAAEEPSLLDDGLRKRIRDG 423 (451)
Q Consensus 404 ~~~g~~~~a~~~~~~~~~~g 423 (451)
...|+++.|.+.+++.++..
T Consensus 218 ~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 218 IAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999888644
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=1.5e-12 Score=113.74 Aligned_cols=198 Identities=15% Similarity=-0.010 Sum_probs=143.1
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (451)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l 247 (451)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++.+.|++++|...|++..+.. |.+...+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART---PRYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHH
Confidence 44456666777777777777777777776643 2356667777777777777777777777776654 2356667777
Q ss_pred HHHHHhc-----------CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010 248 ISSYCKY-----------GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316 (451)
Q Consensus 248 i~~~~~~-----------g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 316 (451)
...|... | ++++|...|++..+.. +-+...+..+-.++...|++++|...|++..+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g-----------~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKG-----------YLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHH-----------HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhccccc-----------CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 7777766 6 9999999999888752 235677888888999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 317 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
. .+...+..+-..|...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..
T Consensus 148 ~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 148 E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7 688899999999999999999999999998876 5677888888899999999999999887654
No 33
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=3.2e-12 Score=114.04 Aligned_cols=203 Identities=14% Similarity=0.029 Sum_probs=139.8
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
...+..+...+...|++++|.+.++++.+... .+...+..+...|...|++++|.+.|+++.+.. +.+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP---SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 56677777788888888888888888877642 245677777788888888888888888777643 23567777777
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHH
Q 013010 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291 (451)
Q Consensus 212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 291 (451)
..|...|++++|.++|+++...+.. +.+...+..+...|...| ++++|...+++..+.. +.+...+.
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~-~~~~~~~~ 179 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLY-PERSRVFENLGLVSLQMK-----------KPAQAKEYFEKSLRLN-RNQPSVAL 179 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTC-TTHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccC-cccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcC-cccHHHHH
Confidence 7777888888888888777762221 235566777777777777 7777777777776542 23455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 292 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
.+...+...|++++|...++.+.+.. +.+...+..+...|...|+.++|.++++++.+..
T Consensus 180 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 180 EMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 66667777777777777777666542 2345566666666666777777777777666653
No 34
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=6.5e-12 Score=109.54 Aligned_cols=200 Identities=14% Similarity=-0.032 Sum_probs=106.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (451)
Q Consensus 169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li 248 (451)
...+..+...+...|++++|.+.|+++.+.. +.+...|..+...|...|++++|.+.+++..... +.+..++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~ 83 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK---PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCChHHHHHHH
Confidence 3445555555555555555555555555432 2234455555555555555555555555555433 23445555555
Q ss_pred HHHHhc-CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010 249 SSYCKY-GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD-VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326 (451)
Q Consensus 249 ~~~~~~-g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 326 (451)
..|... | ++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 84 ~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 151 (225)
T 2vq2_A 84 WFLCGRLN-----------RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFK 151 (225)
T ss_dssp HHHHTTTC-----------CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHHhcC-----------cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHH
Confidence 555555 5 55555555555554211222 3445555555555566666666555555432 11355555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
.+...|...|++++|...++++.+.. + .+...+..+...+...|+.++|..+++.+.+
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55566666666666666666655543 2 3444555555555566666666666655543
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=1.3e-12 Score=114.31 Aligned_cols=201 Identities=13% Similarity=0.053 Sum_probs=161.2
Q ss_pred CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 013010 129 FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208 (451)
Q Consensus 129 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 208 (451)
+++...+..+...+.+.|++++|...|++..+... .+...+..+...+.+.|++++|+..|++..+.. +-+...+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP---QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 55777888899999999999999999999998763 367789999999999999999999999998854 33578889
Q ss_pred HHHHHHHhc-----------CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHH
Q 013010 209 VVINALCRV-----------GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277 (451)
Q Consensus 209 ~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~ 277 (451)
.+..++... |++++|...|++..+.. |-+...+..+...|...| ++++|...|++
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~ 143 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLG-----------ERDKAEASLKQ 143 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcC-----------ChHHHHHHHHH
Confidence 999999999 99999999999998865 346788999999999999 99999999999
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 278 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
..+.. .+...+..+..+|...|++++|...|+...+.. +-+...+..+...+...|++++|+..+++...
T Consensus 144 al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 144 ALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 98876 688889999999999999999999999988763 22678888999999999999999999987643
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=1.2e-11 Score=110.20 Aligned_cols=209 Identities=10% Similarity=-0.082 Sum_probs=176.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (451)
Q Consensus 169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li 248 (451)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|.+.|+++.... +.+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD---SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHH
Confidence 5678888899999999999999999998753 3468889999999999999999999999988765 34788899999
Q ss_pred HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013010 249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327 (451)
Q Consensus 249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 327 (451)
..|...| ++++|.++++++.+.+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 113 ~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 180 (252)
T 2ho1_A 113 GFLYEQK-----------RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALE 180 (252)
T ss_dssp HHHHHTT-----------CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred HHHHHHh-----------HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHH
Confidence 9999999 8999999999988733344 45678888899999999999999999988763 235788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK 397 (451)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 397 (451)
+...|...|++++|...++++.+.. +.+...+..+...+...|+.++|.++++++.+.. |+...+.
T Consensus 181 la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 246 (252)
T 2ho1_A 181 MADLLYKEREYVPARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEYQ 246 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHHH
Confidence 9999999999999999999998865 5677788889999999999999999999998753 5444433
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=2.7e-11 Score=109.62 Aligned_cols=226 Identities=11% Similarity=-0.028 Sum_probs=127.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCCCHHHHH
Q 013010 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYT 245 (451)
Q Consensus 170 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~p~~~~~~ 245 (451)
.++..+...|...|++++|...|++..+. -+..++..+...|.. .+++++|...|++..+.+ +..++.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHHH
Confidence 34444555555555555555555555542 233444455555555 555555555555555443 344555
Q ss_pred HHHHHHHh----cCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 013010 246 ILISSYCK----YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK----TYRIERALELFDDMNKKG 317 (451)
Q Consensus 246 ~li~~~~~----~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 317 (451)
.+...|.. .+ ++++|...|++..+.+ +...+..+-..|.. .+++++|.+.|+...+.+
T Consensus 79 ~lg~~~~~g~~~~~-----------~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQ-----------NTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHHHHHHHTSSSCC-----------CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCccc-----------CHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 55555555 45 5555555555555443 44455555555555 566666666666655544
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 013010 318 CIPNRVTYNSFIRYYSV----VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE----AGRVLEARDFLAELVDGGS 389 (451)
Q Consensus 318 ~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 389 (451)
+...+..+-..|.. .+++++|...|++..+.+ +...+..+-..|.. .+++++|.+.|++..+.+.
T Consensus 145 ---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 145 ---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred ---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 34455555555555 666666666666666543 24555556666666 6667777777766666542
Q ss_pred CCCHHHHHHHHHHHHh----cCCCchHHHHHHHHHHhchHHH
Q 013010 390 VPREYTYKLVCDALNA----AEEPSLLDDGLRKRIRDGIEYR 427 (451)
Q Consensus 390 ~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~ 427 (451)
...+..+...|.. .|+.++|.+.+++.++.|....
T Consensus 218 ---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 218 ---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp ---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred ---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 4556666666666 6777777777777766665443
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=1.1e-10 Score=105.58 Aligned_cols=224 Identities=11% Similarity=-0.007 Sum_probs=198.2
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE----EGLVNEALATFYRMKQFRCRPDVYA 206 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 206 (451)
+...+..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 66788889999999999999999999999843 45678889999999 999999999999999875 7889
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh----cCCchhhhHHHHHHHHHHHHHHHHH
Q 013010 207 YNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK----YGMQTGCRKAIRRRIWEANHLFRLM 278 (451)
Q Consensus 207 ~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~----~g~~~~~~~~~~~~~~~a~~~~~~m 278 (451)
+..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+ ++++|...|++.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~-----------~~~~A~~~~~~a 140 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKVVTR-----------DFKKAVEYFTKA 140 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCC-----------CHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----CccHHHHHHHHHHcCCCccc-----------CHHHHHHHHHHH
Confidence 9999999999 999999999999998875 66788999999998 88 999999999999
Q ss_pred HhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 013010 279 LFKGFVPDVVAYNCLIDGCCK----TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV----VNEIDKAIEMMRKMQN 350 (451)
Q Consensus 279 ~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~ 350 (451)
.+.+ +...+..+-..|.. .+++++|...|+...+.+ +...+..+-..|.. .+++++|...|++..+
T Consensus 141 ~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 141 CDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 8876 56777888888888 899999999999998875 56788888889999 9999999999999988
Q ss_pred cCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCC
Q 013010 351 LNHGVPTSSSYTPIIHALCE----AGRVLEARDFLAELVDGG 388 (451)
Q Consensus 351 ~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 388 (451)
.+. ...+..+-..|.. .+++++|.+.|++..+.|
T Consensus 215 ~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 215 LEN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 652 6678888888888 899999999999998876
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=1.3e-11 Score=107.51 Aligned_cols=205 Identities=10% Similarity=-0.019 Sum_probs=173.5
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+...+..+...+...|++++|.+.++...+.... +...+..+...|...|++++|.+.|++..+.. +.+..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 4567888899999999999999999999887532 56689999999999999999999999998753 3467889999
Q ss_pred HHHHHhc-CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhh
Q 013010 211 INALCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289 (451)
Q Consensus 211 i~~~~~~-g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 289 (451)
...+... |++++|...++++...+.. +.+...+..+...+...| ++++|...++++.+.. +.+...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~-~~~~~~ 149 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTY-PTPYIANLNKGICSAKQG-----------QFGLAEAYLKRSLAAQ-PQFPPA 149 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTC-SCHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCC-cchHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhC-CCCchH
Confidence 9999999 9999999999999883321 234678899999999999 8999999999988753 335778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 290 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
+..+...+...|++++|.+.++...+..-..+...+..+...+...|+.+.|..+++.+.+..
T Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 150 FKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 889999999999999999999998876421467788888888999999999999999988754
No 40
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.50 E-value=3.4e-10 Score=111.65 Aligned_cols=285 Identities=13% Similarity=0.063 Sum_probs=167.1
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh---
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFAR----GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE--- 181 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~--- 181 (451)
.++.++|++.|+...+. + +...+..|...|.. .+++++|.+.|++..+.+ +...+..|...|..
T Consensus 92 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALK-G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-----RDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCC
Confidence 44556666666655542 2 34444555555555 556666666666555544 23344455555544
Q ss_pred -cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh---
Q 013010 182 -EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK--- 253 (451)
Q Consensus 182 -~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~--- 253 (451)
.++.++|.+.|++..+.| +...+..+...|.. .++.++|.++|++..+.| +..++..+...|..
T Consensus 163 ~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-----DELGQLHLADMYYFGIG 234 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCC
Confidence 455555555555555532 44455555555554 455555555555554443 23344444444443
Q ss_pred -cCCchhhhHHH-------------------------HHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-----CC
Q 013010 254 -YGMQTGCRKAI-------------------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT-----YR 302 (451)
Q Consensus 254 -~g~~~~~~~~~-------------------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~ 302 (451)
.++.+.+.+.+ .++.++|...|+...+.| +...+..+-..|... ++
T Consensus 235 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp SCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 23111111110 015666777776666543 444555566666665 67
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH----cCCHH
Q 013010 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN---EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE----AGRVL 375 (451)
Q Consensus 303 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~ 375 (451)
+++|...|+...+.| +...+..+-..|...| +.++|.+.|++..+.+ +...+..|-..|.. .++++
T Consensus 312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 777777777777664 3455666666666655 6777888887777654 35667777777777 67888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCCchHHHHHHHHHHhc
Q 013010 376 EARDFLAELVDGGSVPREYTYKLVCDALNA----AEEPSLLDDGLRKRIRDG 423 (451)
Q Consensus 376 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g 423 (451)
+|.++|++..+.| +...+..|-..|.. .++.++|.+.+++..+.|
T Consensus 385 ~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 385 QAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8888888887765 45667777777777 788888888888887666
No 41
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.50 E-value=5e-10 Score=110.38 Aligned_cols=286 Identities=14% Similarity=0.099 Sum_probs=192.1
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh---
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFAR----GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE--- 181 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~--- 181 (451)
.++.++|+..|+...+. | +...+..|...|.. .+++++|.+.|++..+.+ +...+..|-..|..
T Consensus 56 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g 126 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-----LPQAQQNLGVMYHEGNG 126 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSS
T ss_pred CcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCC
Confidence 57789999999998764 3 56788889999988 899999999999998876 45567788888888
Q ss_pred -cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh---
Q 013010 182 -EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK--- 253 (451)
Q Consensus 182 -~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~--- 253 (451)
.+++++|...|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+..+...|..
T Consensus 127 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g 198 (490)
T 2xm6_A 127 VKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-----NVWSCNQLGYMYSRGLG 198 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCC
Confidence 889999999999999875 67788888888887 789999999999998875 66788888888887
Q ss_pred -cCCchhhhHHHH-------------------------HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCH
Q 013010 254 -YGMQTGCRKAIR-------------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK----TYRI 303 (451)
Q Consensus 254 -~g~~~~~~~~~~-------------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~ 303 (451)
.++.+.+.+.++ +++++|...|+...+.| +...+..+-..|.. .++.
T Consensus 199 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 199 VERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCH
Confidence 663333332211 13344444444444332 23333334444444 4555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC---CHH
Q 013010 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVV-----NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG---RVL 375 (451)
Q Consensus 304 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~ 375 (451)
++|.+.|+...+.| +...+..+-..|... ++.++|...|++..+.+ +...+..+-..|...| +.+
T Consensus 276 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 276 LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHH
Confidence 55555555555443 334444455555554 56666666666665543 2344455555555544 566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCCchHHHHHHHHHHhch
Q 013010 376 EARDFLAELVDGGSVPREYTYKLVCDALNA----AEEPSLLDDGLRKRIRDGI 424 (451)
Q Consensus 376 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~ 424 (451)
+|.++|++..+.| +...+..|-..|.. .++.+.|.+.+++..+.|.
T Consensus 349 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~ 398 (490)
T 2xm6_A 349 KAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL 398 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC
Confidence 6666666666653 45566666666666 6677777777777666554
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=9.7e-12 Score=112.17 Aligned_cols=236 Identities=9% Similarity=-0.078 Sum_probs=162.8
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHH
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP--DVYAYNVV 210 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l 210 (451)
..+......+...|++++|...++...+.... +...+..+...|...|++++|...|++..+.+-.+ ...+|..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34555667777888888888888888776532 34467777778888888888888888887733112 23347777
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 290 (451)
...+...|++++|.+.|++..+.. +.+..++..+...|...| ++++|...|++..+. .+.+...+
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~-~~~~~~~~ 145 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKG-----------NFPLAIQYMEKQIRP-TTTDPKVF 145 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTT-----------CHHHHHHHHGGGCCS-SCCCHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHhhc-CCCcHHHH
Confidence 788888888888888888877654 245577888888888888 778888888777654 12344555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCCh------hhH
Q 013010 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE---IDKAIEMMRKMQNLNHGVPTS------SSY 361 (451)
Q Consensus 291 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~p~~------~~~ 361 (451)
..+...+...+++++|.+.|+...+.. +.+...+..+...+...|+ .++|...+++..+.....|+. ..|
T Consensus 146 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 224 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 555524444558888888888877652 2246666777777777777 777777777766543212332 466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010 362 TPIIHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 362 ~~li~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
..+...|...|++++|.+.+++..+.
T Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 225 EYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67777788888888888888887764
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=1.8e-12 Score=117.02 Aligned_cols=250 Identities=12% Similarity=-0.014 Sum_probs=192.8
Q ss_pred HccCChhHHHHHHHHHHHcCCCC-CccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 013010 143 ARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221 (451)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 221 (451)
...|++++|...++.+.+..... +.+..+|..+...+...|++++|...|++..+.. +.+..+|..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 44689999999999998874322 2357789999999999999999999999998854 346899999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 013010 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301 (451)
Q Consensus 222 ~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 301 (451)
+|.+.|++..... +.+..++..+...|.+.| ++++|...|+++.+. .|+.......+..+...|
T Consensus 95 ~A~~~~~~al~~~---~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~ 158 (275)
T 1xnf_A 95 AAYEAFDSVLELD---PTYNYAHLNRGIALYYGG-----------RDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKL 158 (275)
T ss_dssp HHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---ccccHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhc
Confidence 9999999998865 346789999999999999 899999999999875 455555555666667889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CChhhHHHHHHHHHHcCCHHHHHH
Q 013010 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-V-PTSSSYTPIIHALCEAGRVLEARD 379 (451)
Q Consensus 302 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-p~~~~~~~li~~~~~~g~~~~A~~ 379 (451)
++++|...++...... +++...+. +...+...++.++|...+.+....... . .+...+..+...|.+.|++++|.+
T Consensus 159 ~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 236 (275)
T 1xnf_A 159 DEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 236 (275)
T ss_dssp CHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999998877652 33444444 677778888899999999988764310 0 115788889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHH
Q 013010 380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG 415 (451)
Q Consensus 380 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 415 (451)
.|++..+.. |+. +.....++...|+++++.+.
T Consensus 237 ~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 237 LFKLAVANN--VHN--FVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp HHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHH
Confidence 999998754 432 22224455666666655443
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=3.8e-12 Score=112.66 Aligned_cols=202 Identities=13% Similarity=0.045 Sum_probs=117.7
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+...|..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.|++..+.. +.+..++..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK---EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp --------------------CCTTHHHHHTTCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 445566666677777777777777777766542 245566777777777777777777777776642 2356666777
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 290 (451)
...|...|++++|.+.++++.+.. +.+...+..+...+.+.| ++++|...+++..+.. +.+...+
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~~~~~~-~~~~~~~ 162 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG---MENGDLFYMLGTVLVKLE-----------QPKLALPYLQRAVELN-ENDTEAR 162 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHTS-----------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHhC-CccHHHH
Confidence 777777777777777777766654 245666667777777777 6667777776666542 2345556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 291 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
..+...+...|++++|.+.++++.+.. +.+..++..+...|...|++++|.+.++++.+..
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 666666666677777766666665542 2245566666666666666666666666666543
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=5.3e-12 Score=111.72 Aligned_cols=202 Identities=13% Similarity=0.058 Sum_probs=138.0
Q ss_pred ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 013010 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246 (451)
Q Consensus 167 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~ 246 (451)
.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..... +.+..++..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 96 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD---SSAATAYYG 96 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CcchHHHHH
Confidence 345567777778888888888888888887743 3467778888888888888888888888887664 246777888
Q ss_pred HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326 (451)
Q Consensus 247 li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 326 (451)
+...|...| ++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+.
T Consensus 97 la~~~~~~~-----------~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 163 (243)
T 2q7f_A 97 AGNVYVVKE-----------MYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARF 163 (243)
T ss_dssp HHHHHHHTT-----------CHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHhc-----------cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHH
Confidence 888888888 7888888888777653 3356677777788888888888888888877652 23567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010 327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
.+...|...|++++|...++++.+.. +.+..++..+...|...|++++|.+.+++..+.
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77888888888888888888877765 455667777788888888888888888877764
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=2.5e-11 Score=109.39 Aligned_cols=239 Identities=12% Similarity=0.055 Sum_probs=188.5
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV 185 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~ 185 (451)
+...+++++|+..|+...+. .+.+...+..+...+...|++++|...++...+....+.....+|..+...+...|++
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 45577899999999999864 3345568888999999999999999999999885433333455689999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH
Q 013010 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265 (451)
Q Consensus 186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~ 265 (451)
++|...|++..+.. +.+..+|..+...|...|++++|...|++..+.. +.+..++..+...+...+
T Consensus 91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~---------- 156 (272)
T 3u4t_A 91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNK---------- 156 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHH----------
Confidence 99999999998853 3467899999999999999999999999998774 357777877773444555
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhc
Q 013010 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR---IERALELFDDMNKKG-CIPN------RVTYNSFIRYYSVV 335 (451)
Q Consensus 266 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~t~~~li~~~~~~ 335 (451)
++++|...|++..+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..+|..+-..|...
T Consensus 157 -~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 157 -EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp -CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 7899999999988753 2346677778888888888 888888888876541 1233 25788888999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010 336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364 (451)
Q Consensus 336 g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 364 (451)
|++++|.+.|++..+.. +-+......+
T Consensus 235 ~~~~~A~~~~~~al~~~--p~~~~a~~~l 261 (272)
T 3u4t_A 235 RDKVKADAAWKNILALD--PTNKKAIDGL 261 (272)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC--ccHHHHHHHh
Confidence 99999999999999876 3444444443
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=4.6e-11 Score=113.30 Aligned_cols=248 Identities=8% Similarity=0.010 Sum_probs=200.6
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL-VNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
...|..+...+.+.|++++|...+++..+.+.. +..+|+.+...+...|+ +++|+..|++..+.. +-+...|+.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 456777888889999999999999999988633 67789999999999997 999999999999854 3368899999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 290 (451)
..++...|++++|+..|+++.... +-+..+|..+..++.+.| ++++|+..|+++.+.. +-+...|
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g-----------~~~eAl~~~~~al~l~-P~~~~a~ 237 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFK-----------LWDNELQYVDQLLKED-VRNNSVW 237 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHT-----------CCTTHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHhC-CCCHHHH
Confidence 999999999999999999999876 358899999999999999 8889999999998763 3367888
Q ss_pred HHHHHHHHh-cCCHHHH-----HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCChhhH
Q 013010 291 NCLIDGCCK-TYRIERA-----LELFDDMNKKGCIP-NRVTYNSFIRYYSVVN--EIDKAIEMMRKMQNLNHGVPTSSSY 361 (451)
Q Consensus 291 ~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~ 361 (451)
+.+..++.. .|..++| .+.++...+. .| +...|+.+...|...| ++++|++.+.++ +.. ..+...+
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~--p~~~~al 312 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS--HSSPYLI 312 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT--CCCHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC--CCCHHHH
Confidence 999999988 6665777 4778887765 35 5778888888888888 689999999888 433 5667788
Q ss_pred HHHHHHHHHcC---------CHHHHHHHHHHH-HhCCCCCC-HHHHHHHHHHHHh
Q 013010 362 TPIIHALCEAG---------RVLEARDFLAEL-VDGGSVPR-EYTYKLVCDALNA 405 (451)
Q Consensus 362 ~~li~~~~~~g---------~~~~A~~l~~~m-~~~g~~p~-~~t~~~li~~~~~ 405 (451)
..+...|.+.| .+++|.++|+++ .+ +.|. ..-|..+...+..
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 88999998874 358999999998 55 3344 4455555555543
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=1.3e-11 Score=117.91 Aligned_cols=288 Identities=14% Similarity=0.029 Sum_probs=210.3
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-C
Q 013010 130 HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQF----RCRP-D 203 (451)
Q Consensus 130 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~ 203 (451)
.....+......+...|++++|...|++..+.+..... ...+|..+...|...|++++|...|++..+. +-.| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34556677788899999999999999999887532111 1357888999999999999999999987542 2122 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC---CCCHHHHHHHHHHHHhcCC-------------chhhhHHHHHH
Q 013010 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRC---PPDVYTYTILISSYCKYGM-------------QTGCRKAIRRR 267 (451)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~p~~~~~~~li~~~~~~g~-------------~~~~~~~~~~~ 267 (451)
..++..+...|...|++++|...+++........ .....++..+...|...|+ .+.+.. .
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~----~ 162 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD----A 162 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH----H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH----H
Confidence 5678888889999999999999998876532100 0124578888888988883 111111 1
Q ss_pred HHHHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC
Q 013010 268 IWEANHLFRLMLFK----GFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIP-NRVTYNSFIRYYSVVNE 337 (451)
Q Consensus 268 ~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~ 337 (451)
+++|...+.+.... +..+ ...++..+...|...|++++|.+.+++..+. +..+ ...++..+...|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 77777777765432 2111 2456888888999999999999999987643 1111 13478888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC
Q 013010 338 IDKAIEMMRKMQNLNHGVPT----SSSYTPIIHALCEAGRVLEARDFLAELVDG----GSVP-REYTYKLVCDALNAAEE 408 (451)
Q Consensus 338 ~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~ 408 (451)
+++|...+++........++ ..++..+...|...|++++|.+.+++..+. +-.+ ...++..+...|...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999987754311111 557888889999999999999999988743 2111 15678889999999999
Q ss_pred CchHHHHHHHHHH
Q 013010 409 PSLLDDGLRKRIR 421 (451)
Q Consensus 409 ~~~a~~~~~~~~~ 421 (451)
++.|.+.+++.++
T Consensus 323 ~~~A~~~~~~al~ 335 (406)
T 3sf4_A 323 HDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=1e-11 Score=119.33 Aligned_cols=285 Identities=12% Similarity=0.022 Sum_probs=209.2
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCCHHH
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQF----R-CRPDVYA 206 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~ 206 (451)
..+..+...+...|++++|...+++..+.+..... ....|..+...|...|++++|...|++..+. + ......+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34555677888999999999999999887533110 1257888999999999999999999988653 1 1224567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCC---CCCCHHHHHHHHHHHHhcCC----------chhhhHHHHHHHHHHHH
Q 013010 207 YNVVINALCRVGNFNKARFLLEQMELPGFR---CPPDVYTYTILISSYCKYGM----------QTGCRKAIRRRIWEANH 273 (451)
Q Consensus 207 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---~~p~~~~~~~li~~~~~~g~----------~~~~~~~~~~~~~~a~~ 273 (451)
+..+...|...|++++|...+++....... .+....++..+...|...|+ .+.+.. .+++|..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~----~~~~A~~ 204 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE----ALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH----HHHHHHH
Confidence 888889999999999999999887654100 01245578888889998883 111111 1777777
Q ss_pred HHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 013010 274 LFRLMLFK----GFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGC-IPN----RVTYNSFIRYYSVVNEIDKAIE 343 (451)
Q Consensus 274 ~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~ 343 (451)
.+++..+. +-.+ ...++..+...|...|++++|.+.+++..+..- .++ ..++..+...|...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 77765431 1111 235788888999999999999999998765311 012 3478888999999999999999
Q ss_pred HHHHHHhcCCCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCCchHHH
Q 013010 344 MMRKMQNLNHGV----PTSSSYTPIIHALCEAGRVLEARDFLAELVDG----GSV-PREYTYKLVCDALNAAEEPSLLDD 414 (451)
Q Consensus 344 ~~~~m~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~a~~ 414 (451)
.+++........ ....++..+...|...|++++|.+++++..+. +.. ....++..+...|...|+++.|.+
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999877643211 12567888889999999999999999988743 111 124578889999999999999999
Q ss_pred HHHHHHH
Q 013010 415 GLRKRIR 421 (451)
Q Consensus 415 ~~~~~~~ 421 (451)
.+++.++
T Consensus 365 ~~~~al~ 371 (411)
T 4a1s_A 365 YAEQHLQ 371 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999874
No 50
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=2.1e-11 Score=112.95 Aligned_cols=283 Identities=14% Similarity=0.038 Sum_probs=204.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CCHHHH
Q 013010 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQF----RCR-PDVYAY 207 (451)
Q Consensus 134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~ 207 (451)
.+......+...|++++|...+++..+....... ....+..+...|...|++++|.+.+++..+. +-. ....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445567788899999999999999887532110 1467888899999999999999999887542 111 235678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC----HHHHHHHHHHHHhcCC-------------chhhhHHHHHHHHH
Q 013010 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPD----VYTYTILISSYCKYGM-------------QTGCRKAIRRRIWE 270 (451)
Q Consensus 208 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~----~~~~~~li~~~~~~g~-------------~~~~~~~~~~~~~~ 270 (451)
..+...|...|++++|...+++....... .++ ..++..+...|...|+ .+.+.+ .+++
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~ 161 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN----ALQA 161 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH----HHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH----HHHH
Confidence 88888999999999999999887543211 012 4478888888888883 111111 1777
Q ss_pred HHHHHHHHHhc----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHH
Q 013010 271 ANHLFRLMLFK----GFV-PDVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIP-NRVTYNSFIRYYSVVNEIDK 340 (451)
Q Consensus 271 a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~ 340 (451)
|...+++.... +.. ....++..+...+...|++++|.+.+++..+. +..+ ...++..+...|...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777665431 111 12456788888999999999999999987643 1111 23478888889999999999
Q ss_pred HHHHHHHHHhcCCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCCch
Q 013010 341 AIEMMRKMQNLNHGVPT----SSSYTPIIHALCEAGRVLEARDFLAELVDG----GSV-PREYTYKLVCDALNAAEEPSL 411 (451)
Q Consensus 341 A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~ 411 (451)
|...+++.........+ ..++..+...|...|++++|...+++..+. +-. ....++..+...+.+.|+++.
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999987754311111 557788888999999999999999988643 111 124578889999999999999
Q ss_pred HHHHHHHHHH
Q 013010 412 LDDGLRKRIR 421 (451)
Q Consensus 412 a~~~~~~~~~ 421 (451)
|.+.+++.++
T Consensus 322 A~~~~~~a~~ 331 (338)
T 3ro2_A 322 AMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.36 E-value=3.1e-11 Score=115.32 Aligned_cols=294 Identities=14% Similarity=0.050 Sum_probs=216.1
Q ss_pred CchhhhcCHHHHHHHHHHHhhcCCCCCC----HHhHHHHHHHHHccCChhHHHHHHHHHHHcC---CCCCccHHhHHHHH
Q 013010 104 DPQKVTLGLNKATEFYHWVERFFDFFHN----EMTCKEMGIVFARGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLI 176 (451)
Q Consensus 104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~li 176 (451)
..+...+++++|+..|+...... +.+ ...+..+...+...|++++|...+++..... ..++....++..+.
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 94 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 94 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 34566788999999999998751 223 3578889999999999999999998865431 12223466788899
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHHHHHhh
Q 013010 177 KVLGEEGLVNEALATFYRMKQFRC-RPD----VYAYNVVINALCRVGN--------------------FNKARFLLEQME 231 (451)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~ 231 (451)
..|...|++++|...+++..+..- .++ ..++..+...|...|+ +++|...+.+..
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999998865310 012 4578888899999999 999999988764
Q ss_pred hC----CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc----CCC-CCHhhHHHHHHHHHhcCC
Q 013010 232 LP----GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK----GFV-PDVVAYNCLIDGCCKTYR 302 (451)
Q Consensus 232 ~~----g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~ 302 (451)
.. +.. +....++..+...|...| ++++|...+++..+. +.. ....++..+...|...|+
T Consensus 175 ~~~~~~~~~-~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 175 SLVTALGDR-AAQGRAFGNLGNTHYLLG-----------NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHHHHHT-----------BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhccCc-HHHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 42 211 123457888899999999 777777777766542 111 113478888899999999
Q ss_pred HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHHHHcCC
Q 013010 303 IERALELFDDMNKK----GCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT----SSSYTPIIHALCEAGR 373 (451)
Q Consensus 303 ~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~ 373 (451)
+++|...+++..+. +..+ ...++..+...|...|++++|...+++..+......+ ..++..+...|...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999987643 2111 1567888899999999999999999987764321122 5578888889999999
Q ss_pred HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCCch
Q 013010 374 VLEARDFLAELVDG----GSVP-REYTYKLVCDALNAAEEPSL 411 (451)
Q Consensus 374 ~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~ 411 (451)
+++|.+.+++..+. +..+ ...++..+...+...|+...
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99999999887642 2222 25577788888888887643
No 52
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=5.8e-11 Score=108.97 Aligned_cols=241 Identities=13% Similarity=0.002 Sum_probs=154.5
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC------C
Q 013010 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQF-------RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP------G 234 (451)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 234 (451)
+..++..+...+...|++++|..+|+++.+. .......++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4455666666666777777777777666552 12233556666777777777777777777766543 2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc------CC-CCCHhhHHHHHHHHHhcCCHHHHH
Q 013010 235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK------GF-VPDVVAYNCLIDGCCKTYRIERAL 307 (451)
Q Consensus 235 ~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~a~ 307 (451)
. .+....++..+...|...| ++++|...+++..+. +- ......+..+...+...|++++|.
T Consensus 106 ~-~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 106 D-HPAVAATLNNLAVLYGKRG-----------KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp T-CHHHHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred C-ChHHHHHHHHHHHHHHHcC-----------cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 1235677889999999999 777777777766543 22 224567888889999999999999
Q ss_pred HHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCChhhHHHHHH-------H
Q 013010 308 ELFDDMNKK------GCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH------GVPTSSSYTPIIH-------A 367 (451)
Q Consensus 308 ~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~p~~~~~~~li~-------~ 367 (451)
+.+++..+. +..| ...++..+...|...|++++|.+.++++.+... ..+.......... .
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 999998764 2233 356788899999999999999999999886310 0122222222222 2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 368 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
+...+.+.+|...+...... ......++..+..+|.+.|++++|.+.+++.++
T Consensus 254 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23334444555555555432 123456788899999999999999999888764
No 53
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=9.3e-10 Score=101.47 Aligned_cols=218 Identities=10% Similarity=0.011 Sum_probs=166.5
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH-------ccCCh-------hHHHHHHHHHHHc-CCCCCccHHhHHHHHH
Q 013010 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFA-------RGNNV-------KGLWDFLKDMSRR-GNGELVTTSSVTCLIK 177 (451)
Q Consensus 113 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~-~~~~~~~~~~~~~li~ 177 (451)
++|+..|+..... .+.+...|..++..+. +.|++ ++|..+|++..+. .. .+...|..+..
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p---~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK---KNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc---ccHHHHHHHHH
Confidence 6888999998864 3556778888887775 35886 8999999998883 32 25667889999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH-hc
Q 013010 178 VLGEEGLVNEALATFYRMKQFRCRPD-VY-AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC-KY 254 (451)
Q Consensus 178 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~-~~ 254 (451)
.+.+.|++++|.++|++..+. .|+ .. +|..+...+.+.|++++|.++|++..+.. +++...|........ ..
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTS
T ss_pred HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHc
Confidence 999999999999999999873 454 33 78888999999999999999999988764 244455543333322 25
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHH
Q 013010 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG-CIP--NRVTYNSFIRY 331 (451)
Q Consensus 255 g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~t~~~li~~ 331 (451)
| ++++|..+|+...+.. +-+...|..++..+.+.|++++|..+|+...... ..| ....|..++..
T Consensus 183 ~-----------~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 183 K-----------DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp C-----------CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred C-----------CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 6 7888888888877642 3356778888888888899999999999888763 455 46678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 013010 332 YSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 332 ~~~~g~~~~A~~~~~~m~~~~ 352 (451)
+.+.|+.+.|..+++++.+..
T Consensus 251 ~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 251 ESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHHc
Confidence 888899999998888888765
No 54
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=1.3e-09 Score=106.53 Aligned_cols=302 Identities=12% Similarity=-0.012 Sum_probs=212.8
Q ss_pred CCchhhhcCHHHHHHHHHHHhhc----C---CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcC-----CCCCccHH
Q 013010 103 RDPQKVTLGLNKATEFYHWVERF----F---DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-----NGELVTTS 170 (451)
Q Consensus 103 ~~~~~~~~~~~~A~~~f~~~~~~----~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~ 170 (451)
+..+...|+.++|++.|+...+. . ..+....+|+.+..+|...|++++|...+++..+.. ........
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 34466678889999988876541 1 123345689999999999999999999998876531 11112345
Q ss_pred hHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHH---HHhcCChHHHHHHHHHhhhCCCCCCCCHHHH
Q 013010 171 SVTCLIKVLGEE--GLVNEALATFYRMKQFRCRPD-VYAYNVVINA---LCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244 (451)
Q Consensus 171 ~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~ 244 (451)
+++.+..++... +++++|.+.|++..+. .|+ ...+..+..+ +...++.++|++.+++..+.. |.+..++
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~---p~~~~~~ 212 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---PDNQYLK 212 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC---SSCHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC---CcchHHH
Confidence 666666566554 5799999999999874 354 4455444444 445678889999998887764 3567777
Q ss_pred HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHH
Q 013010 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRV 323 (451)
Q Consensus 245 ~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ 323 (451)
..+...+...+...+ ++++|.+.+++..... +.+..++..+...|...|++++|.+.+++..+. .| +..
T Consensus 213 ~~l~~~~~~~~~~~~-------~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 213 VLLALKLHKMREEGE-------EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp HHHHHHHHHCC-------------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred HHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 777777776653322 6778999998887653 446678888999999999999999999998876 34 466
Q ss_pred HHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010 324 TYNSFIRYYSVV-------------------NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384 (451)
Q Consensus 324 t~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 384 (451)
++..+-..|... +..+.|...+++..+.. +.+...+..+...|...|++++|.+.|++.
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 666665555332 34677888888888766 566778899999999999999999999999
Q ss_pred HhCCCCCCHH--HHHHHHH-HHHhcCCCchHHHHHHHHHH
Q 013010 385 VDGGSVPREY--TYKLVCD-ALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 385 ~~~g~~p~~~--t~~~li~-~~~~~g~~~~a~~~~~~~~~ 421 (451)
++....+... .+..+.. .+...|+.+.|.+.+.+.++
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8765443321 2222222 24567888888888887764
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=5.7e-11 Score=114.03 Aligned_cols=270 Identities=14% Similarity=0.031 Sum_probs=201.8
Q ss_pred CchhhhcCHHHHHHHHHHHhhcCCCCCCH----HhHHHHHHHHHccCChhHHHHHHHHHHHcC---CCCCccHHhHHHHH
Q 013010 104 DPQKVTLGLNKATEFYHWVERFFDFFHNE----MTCKEMGIVFARGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLI 176 (451)
Q Consensus 104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~li 176 (451)
..+...+++++|+..|+...+. .+.+. ..+..+...+...|++++|...+++..+.. ........++..+.
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 3456678899999999999875 12232 478889999999999999999998876541 11223567788899
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC----C-CCCCHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHhhhC-
Q 013010 177 KVLGEEGLVNEALATFYRMKQF----R-CRPDVYAYNVVINALCRVGN-----------------FNKARFLLEQMELP- 233 (451)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~- 233 (451)
..|...|++++|...|++..+. + ......++..+...|...|+ +++|...+++....
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988663 1 12235678888899999999 99999998876442
Q ss_pred ---CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC-CCC----HhhHHHHHHHHHhcCCHHH
Q 013010 234 ---GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF-VPD----VVAYNCLIDGCCKTYRIER 305 (451)
Q Consensus 234 ---g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~ 305 (451)
+.. +....++..+...|...| ++++|...+++..+..- ..+ ..++..+...|...|++++
T Consensus 214 ~~~~~~-~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 214 RDLGDR-GAQGRACGNLGNTYYLLG-----------DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHTCH-HHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHcCCH-HHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 110 123457888999999999 77777777776654210 011 2378888999999999999
Q ss_pred HHHHHHHHHhCC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCChhhHHHHHHHHHHcCCHHH
Q 013010 306 ALELFDDMNKKG----CI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG----VPTSSSYTPIIHALCEAGRVLE 376 (451)
Q Consensus 306 a~~~~~~m~~~g----~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~p~~~~~~~li~~~~~~g~~~~ 376 (451)
|.+.+++..+.. .. ....++..+...|...|++++|...+++....... .....++..+...|...|++++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 361 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER 361 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH
Confidence 999999876531 11 12567888899999999999999999987764211 1124478888899999999999
Q ss_pred HHHHHHHHHhC
Q 013010 377 ARDFLAELVDG 387 (451)
Q Consensus 377 A~~l~~~m~~~ 387 (451)
|.+++++..+.
T Consensus 362 A~~~~~~al~~ 372 (411)
T 4a1s_A 362 ALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.34 E-value=1.9e-10 Score=109.14 Aligned_cols=246 Identities=7% Similarity=-0.035 Sum_probs=193.6
Q ss_pred chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCC-hhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010 105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNN-VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG 183 (451)
Q Consensus 105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g 183 (451)
.+...+..++|+..|+.+... -+-+...|+.+..++...|+ +++|...+++..+.+.. +...|+.+..++...|
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---~~~a~~~~g~~~~~~g 180 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---NYQVWHHRRVLVEWLR 180 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHT
T ss_pred HHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcc
Confidence 355567789999999999864 34467789999999999996 99999999999998643 6778999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh-cCCchhhhH
Q 013010 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-YGMQTGCRK 262 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~-~g~~~~~~~ 262 (451)
++++|+..|+++.+.. +-+...|..+..++...|++++|+..|+++.+.. +-+...|+.+...+.+ .|..+.+
T Consensus 181 ~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~~~eA-- 254 (382)
T 2h6f_A 181 DPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGYNDRA-- 254 (382)
T ss_dssp CCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSCSHH--
T ss_pred CHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCcchHH--
Confidence 9999999999999854 3478899999999999999999999999999876 3488999999999999 5522222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----
Q 013010 263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY--RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN---- 336 (451)
Q Consensus 263 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g---- 336 (451)
.++.++..|++..+.. +-+...|+.+...+...| ++++|.+.+.++ +. ...+...+..+...|.+.|
T Consensus 255 ----~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 255 ----VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp ----HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 1233467787777642 335678888888888888 689999999888 33 2346788889999998874
Q ss_pred -----CHHHHHHHHHHH-HhcCCCCCChhhHHHHHHHHHH
Q 013010 337 -----EIDKAIEMMRKM-QNLNHGVPTSSSYTPIIHALCE 370 (451)
Q Consensus 337 -----~~~~A~~~~~~m-~~~~~~~p~~~~~~~li~~~~~ 370 (451)
..++|.++++++ .+.. +-....|..+...+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D--P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD--TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHH
Confidence 369999999999 6654 3444566666655543
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=6.6e-11 Score=109.57 Aligned_cols=269 Identities=14% Similarity=0.071 Sum_probs=199.3
Q ss_pred chhhhcCHHHHHHHHHHHhhcCCCCCC----HHhHHHHHHHHHccCChhHHHHHHHHHHHcC---CCCCccHHhHHHHHH
Q 013010 105 PQKVTLGLNKATEFYHWVERFFDFFHN----EMTCKEMGIVFARGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLIK 177 (451)
Q Consensus 105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~li~ 177 (451)
.+...+++++|+..|+.+.+.. +.+ ...+..+...+...|++++|.+.+++..... ..+.....++..+..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 3556788999999999998751 223 3678889999999999999999998865431 112234667888999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHHHHHhhh
Q 013010 178 VLGEEGLVNEALATFYRMKQFRC-RPD----VYAYNVVINALCRVGN--------------------FNKARFLLEQMEL 232 (451)
Q Consensus 178 ~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~ 232 (451)
.|...|++++|...+++..+..- .++ ..++..+...|...|+ +++|...+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765210 112 4478888889999999 9999999887643
Q ss_pred C----CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc----CC-CCCHhhHHHHHHHHHhcCCH
Q 013010 233 P----GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK----GF-VPDVVAYNCLIDGCCKTYRI 303 (451)
Q Consensus 233 ~----g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~ 303 (451)
. +.. +....++..+...|...| ++++|...+++..+. +. .....++..+...+...|++
T Consensus 172 ~~~~~~~~-~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 239 (338)
T 3ro2_A 172 LVTALGDR-AAQGRAFGNLGNTHYLLG-----------NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 239 (338)
T ss_dssp HHHHHTCH-HHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCCH-HHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Confidence 2 110 123457888889999999 777777777765532 11 11234788888999999999
Q ss_pred HHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCChhhHHHHHHHHHHcCCH
Q 013010 304 ERALELFDDMNKK----GCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG----VPTSSSYTPIIHALCEAGRV 374 (451)
Q Consensus 304 ~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~p~~~~~~~li~~~~~~g~~ 374 (451)
++|...+++..+. +..+ ...++..+...|...|++++|...+++....... .....++..+...|.+.|++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (338)
T 3ro2_A 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 319 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999999987643 1111 1567788888999999999999999987654211 11244778888999999999
Q ss_pred HHHHHHHHHHHhC
Q 013010 375 LEARDFLAELVDG 387 (451)
Q Consensus 375 ~~A~~l~~~m~~~ 387 (451)
++|.+.+++..+.
T Consensus 320 ~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 320 DQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=2.3e-09 Score=98.76 Aligned_cols=218 Identities=11% Similarity=-0.010 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh-------cCCH-------HHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 013010 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE-------EGLV-------NEALATFYRMKQFRCRP-DVYAYNVVINA 213 (451)
Q Consensus 149 ~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p-~~~~~~~li~~ 213 (451)
++|..+|++...... .+...|..+...+.. .|++ ++|..+|++..+. +.| +...|..+...
T Consensus 33 ~~a~~~~~~al~~~p---~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHH
Confidence 678888988888642 266678887777653 4775 8999999999873 234 56689999999
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCCC-HH-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHH
Q 013010 214 LCRVGNFNKARFLLEQMELPGFRCPPD-VY-TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN 291 (451)
Q Consensus 214 ~~~~g~~~~a~~~~~~m~~~g~~~~p~-~~-~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 291 (451)
+.+.|++++|..+|++..+.. |+ .. +|..+...+.+.| ++++|..+|++..+.. +.+...|.
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~a~~~~-p~~~~~~~ 172 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAIE----DIDPTLVYIQYMKFARRAE-----------GIKSGRMIFKKAREDA-RTRHHVYV 172 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSS----SSCTHHHHHHHHHHHHHHH-----------CHHHHHHHHHHHHTST-TCCTHHHH
T ss_pred HHhcCCHHHHHHHHHHHHhcc----ccCccHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 999999999999999998754 43 33 7888888888888 8889999999888753 23334443
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--ChhhHHHHHHHH
Q 013010 292 CLIDGCC-KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP--TSSSYTPIIHAL 368 (451)
Q Consensus 292 ~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~ 368 (451)
....... ..|++++|.++|+...+.. +-+...|..++..+.+.|++++|..+|++........| ....|..++..+
T Consensus 173 ~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 173 TAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3332222 3689999999999887652 22678888888889999999999999999988642134 356788888888
Q ss_pred HHcCCHHHHHHHHHHHHhC
Q 013010 369 CEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 369 ~~~g~~~~A~~l~~~m~~~ 387 (451)
.+.|+.++|..+++++.+.
T Consensus 252 ~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 252 SNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHSCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8899999999999888764
No 59
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=5.1e-09 Score=104.25 Aligned_cols=200 Identities=10% Similarity=0.033 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHh-------cCChH-------HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q 013010 204 VYAYNVVINALCR-------VGNFN-------KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW 269 (451)
Q Consensus 204 ~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~ 269 (451)
...|......+.+ .|+++ +|..+|++..+.- .|.+...|..++..+.+.| +++
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~--~p~~~~l~~~~~~~~~~~g-----------~~~ 338 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYFAYADYEESRM-----------KYE 338 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT--CSSCHHHHHHHHHHHHHTT-----------CHH
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHhcC-----------CHH
Confidence 4444444444443 46665 6777777766421 1235666777777777777 778
Q ss_pred HHHHHHHHHHhcCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHH
Q 013010 270 EANHLFRLMLFKGFVPDV--VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR-YYSVVNEIDKAIEMMR 346 (451)
Q Consensus 270 ~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~~~~ 346 (451)
+|..+|++..+. .|+. ..|...+..+.+.|++++|.++|+...+.. +.+...|..... .+...|+.++|..+|+
T Consensus 339 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 339 KVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 888888887764 4432 467777777778888888888888877652 112333322222 2335788888888888
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG-SVPR--EYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
...+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..+..++.+
T Consensus 416 ~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 416 LGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 877754 3456778888888888888888888888887753 2232 44777777878888888877777766653
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.31 E-value=1.9e-10 Score=112.88 Aligned_cols=216 Identities=10% Similarity=-0.087 Sum_probs=178.9
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCCh-hHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHH
Q 013010 111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNV-KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEAL 189 (451)
Q Consensus 111 ~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 189 (451)
.+++|+..++..... .+.+...+..+...+...|++ ++|.+.|++..+.... +...|..+...|...|++++|.
T Consensus 83 ~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE---LVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHH
Confidence 367888888876632 344778899999999999999 9999999999988632 5778999999999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc------
Q 013010 190 ATFYRMKQFRCRPDVYAYNVVINALCRV---------GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY------ 254 (451)
Q Consensus 190 ~~~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~------ 254 (451)
+.|++..+. .|+...+..+...|... |++++|...|++..+.. +.+...|..+..+|...
T Consensus 158 ~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 158 TCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999985 57888999999999999 99999999999998875 35788999999999887
Q ss_pred --CCchhhhHHHHHHHHHHHHHHHHHHhcCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013010 255 --GMQTGCRKAIRRRIWEANHLFRLMLFKGFV--PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330 (451)
Q Consensus 255 --g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 330 (451)
| ++++|...|++..+..-. -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..
T Consensus 233 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~ 300 (474)
T 4abn_A 233 NPK-----------ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQ 300 (474)
T ss_dssp CHH-----------HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccc-----------hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 7 899999999998875210 367788888899999999999999999887753 225667888888
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 013010 331 YYSVVNEIDKAIEMMRKM 348 (451)
Q Consensus 331 ~~~~~g~~~~A~~~~~~m 348 (451)
.+...|++++|++.+.++
T Consensus 301 ~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 301 LLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 888888888888765443
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.31 E-value=1.7e-10 Score=113.24 Aligned_cols=223 Identities=11% Similarity=0.014 Sum_probs=179.1
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 013010 148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV-NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226 (451)
Q Consensus 148 ~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 226 (451)
++++...++...... +.+...+..+...|...|++ ++|++.|++..+.. +-+...|..+..+|...|++++|...
T Consensus 84 ~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566666776655543 23677899999999999999 99999999998853 33588999999999999999999999
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc------
Q 013010 227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT------ 300 (451)
Q Consensus 227 ~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~------ 300 (451)
|++..+.. |+..++..+...|...+... ...-.+++++|...|++..+.. +-+...|..+..+|...
T Consensus 160 ~~~al~~~----p~~~~~~~lg~~~~~~~~~~--~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 160 FSGALTHC----KNKVSLQNLSMVLRQLQTDS--GDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHTTC----CCHHHHHHHHHHHTTCCCSC--HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhC----CCHHHHHHHHHHHHHhccCC--hhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999775 77888999999998880000 0000019999999999988753 33577888899999988
Q ss_pred --CCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHH
Q 013010 301 --YRIERALELFDDMNKKGCI--PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376 (451)
Q Consensus 301 --g~~~~a~~~~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 376 (451)
|++++|.+.|++..+..-. -+...|..+-..|...|++++|.+.|++..+.. +-+...+..+...+...|++++
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876210 278899999999999999999999999998876 4566788888889999999999
Q ss_pred HHHHHHH
Q 013010 377 ARDFLAE 383 (451)
Q Consensus 377 A~~l~~~ 383 (451)
|.+.+..
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 8876543
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=3.4e-10 Score=107.76 Aligned_cols=299 Identities=10% Similarity=-0.091 Sum_probs=202.8
Q ss_pred hcCHHHHHHHHHHHhhcCC-CCCC--HHhHHHHHHHHH--ccCChhHHH-----------HHHHHHHHcCCCCCc--cHH
Q 013010 109 TLGLNKATEFYHWVERFFD-FFHN--EMTCKEMGIVFA--RGNNVKGLW-----------DFLKDMSRRGNGELV--TTS 170 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~-~~~~--~~~~~~ll~~~~--~~g~~~~a~-----------~~~~~m~~~~~~~~~--~~~ 170 (451)
.+++++|..+++.+.+..+ ...| ...|-.++..-. -.++++.+. +.++.+......... ...
T Consensus 25 ~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~ 104 (383)
T 3ulq_A 25 RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYY 104 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHH
Confidence 5668999999999876422 2233 333444443321 223344444 666666543211000 011
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC----CCCH
Q 013010 171 SVTCLIKVLGEEGLVNEALATFYRMKQF----RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC----PPDV 241 (451)
Q Consensus 171 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----~p~~ 241 (451)
.+......+...|++++|...|++..+. +-.+ ...+|..+...|...|++++|...+.+..+..... +...
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 1222456677899999999999999774 1111 34678889999999999999999998876531110 1134
Q ss_pred HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK----GFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKK 316 (451)
Q Consensus 242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 316 (451)
.+++.+...|...| ++++|...|++..+. +-.+ ...++..+...|...|++++|.+.+++..+.
T Consensus 185 ~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 185 QCHSLFATNFLDLK-----------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67888999999999 777777777666532 1111 2347888999999999999999999988762
Q ss_pred ----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCChhhHHHHHHHHHHcCC---HHHHHHHHHHHH
Q 013010 317 ----GC-IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG---VPTSSSYTPIIHALCEAGR---VLEARDFLAELV 385 (451)
Q Consensus 317 ----g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~ 385 (451)
+. +....++..+...|...|++++|...+++..+.... ......+..+-..+...|+ +++|..++++.
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~- 332 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK- 332 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-
T ss_pred HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-
Confidence 33 334678889999999999999999999987764211 1112335667777888888 77777777665
Q ss_pred hCCCCCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 386 DGGSVPR-EYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 386 ~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
+..|+ ...+..+...|...|+++.|.+.+++.++
T Consensus 333 --~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 333 --MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333 45678899999999999999999887763
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.27 E-value=1.6e-09 Score=91.41 Aligned_cols=165 Identities=18% Similarity=0.138 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC
Q 013010 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283 (451)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 283 (451)
+.+|..+...|...|++++|.+.|++..+.. |-+..++..+...|.+.| ++++|...+.......
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~-----------~~~~a~~~~~~~~~~~- 69 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---PNNVETLLKLGKTYMDIG-----------LPNDAIESLKKFVVLD- 69 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcC-
Confidence 3344444444444444444444444444332 123344444444444444 4444444444443321
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHH
Q 013010 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP 363 (451)
Q Consensus 284 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 363 (451)
+-+...+..+...+...++++.|.+.+....+.. +-+...+..+-..|.+.|++++|++.|++..+.. +-+...|..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~ 146 (184)
T 3vtx_A 70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQS 146 (184)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHH
Confidence 1122333333344444444444444444443321 1133444444444555555555555555544443 233444445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 013010 364 IIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 364 li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
+...|.+.|++++|.+.|++.++
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555555555555554443
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.27 E-value=1.2e-09 Score=92.31 Aligned_cols=167 Identities=14% Similarity=0.067 Sum_probs=96.1
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+...|..+...|.+.|++++|.+.|++..+.... +..++..+...|.+.|++++|...+....... +-+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHH
Confidence 4455666666666666666666666666655422 44556666666666666666666666665532 2234555555
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 290 (451)
...+...++++.|...+.+..... +.+..++..+...|.+.| ++++|.+.|++..+.. +-+..+|
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~---~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~~l~~~-p~~~~~~ 144 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN---TVYADAYYKLGLVYDSMG-----------EHDKAIEAYEKTISIK-PGFIRAY 144 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHhC-----------CchhHHHHHHHHHHhc-chhhhHH
Confidence 555666666666666666655543 234555666666666666 5666666666555432 2234555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010 291 NCLIDGCCKTYRIERALELFDDMNKK 316 (451)
Q Consensus 291 ~~li~~~~~~g~~~~a~~~~~~m~~~ 316 (451)
..+..+|.+.|++++|.+.|++..+.
T Consensus 145 ~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 145 QSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 55666666666666666666655543
No 65
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=4.7e-09 Score=102.57 Aligned_cols=282 Identities=11% Similarity=-0.004 Sum_probs=195.7
Q ss_pred CCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHc-----CC-CCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC---
Q 013010 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRR-----GN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF--- 198 (451)
Q Consensus 128 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 198 (451)
.......||.|...+...|++++|.+.|++..+. +. ..+....+|+.+...|...|++++|...|++..+.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445678999999999999999999999876542 11 11224568999999999999999999999887652
Q ss_pred --C-CC-CCHHHHHHHHHHHHhc--CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHH
Q 013010 199 --R-CR-PDVYAYNVVINALCRV--GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272 (451)
Q Consensus 199 --g-~~-p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~ 272 (451)
+ .. ....+++.+..++... +++++|...|++..+.. |-+...+..+..++.+.+... +.++|.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~---p~~~~~~~~~~~~~~~l~~~~--------~~~~al 195 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK---PKNPEFTSGLAIASYRLDNWP--------PSQNAI 195 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHSC--------CCCCTH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCch--------HHHHHH
Confidence 1 11 2356676666666554 56999999999988765 235556666555544333111 445666
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010 273 HLFRLMLFKGFVPDVVAYNCLIDGCCK----TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348 (451)
Q Consensus 273 ~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 348 (451)
+.+++..+.. +.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++.
T Consensus 196 ~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 196 DPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 6676665542 2345556555555544 467889999999887653 336788899999999999999999999999
Q ss_pred HhcCCCCCChhhHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Q 013010 349 QNLNHGVPTSSSYTPIIHALCEA-------------------GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409 (451)
Q Consensus 349 ~~~~~~~p~~~~~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 409 (451)
.+.. +-+...+..+...|... +..++|...+....+.. +.+..++..+...+...|++
T Consensus 274 l~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 274 LEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred HHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence 9875 44566666665555332 23567778887776543 22345677889999999999
Q ss_pred chHHHHHHHHHHhchH
Q 013010 410 SLLDDGLRKRIRDGIE 425 (451)
Q Consensus 410 ~~a~~~~~~~~~~g~~ 425 (451)
++|.+.+++.++....
T Consensus 351 ~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999998865443
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=2.3e-10 Score=105.00 Aligned_cols=208 Identities=11% Similarity=0.029 Sum_probs=142.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHH
Q 013010 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELP-----GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276 (451)
Q Consensus 202 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~ 276 (451)
.+..++..+...+...|++++|..+|+++.+. +...+....++..+...|...| ++++|...++
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~ 93 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-----------KYKDAANLLN 93 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHH
Confidence 34677888999999999999999999998763 0001245677889999999999 6666666666
Q ss_pred HHHhc-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 013010 277 LMLFK-------GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK------GCIP-NRVTYNSFIRYYSVVNEIDKAI 342 (451)
Q Consensus 277 ~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~ 342 (451)
+.... .......++..+...|...|++++|.+.+++..+. +-.| ...++..+...|...|++++|.
T Consensus 94 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 173 (311)
T 3nf1_A 94 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE 173 (311)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 65542 12334567888999999999999999999988764 2233 4567888899999999999999
Q ss_pred HHHHHHHhc------CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCC-------HHHHHHHHHH
Q 013010 343 EMMRKMQNL------NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG-------GSVPR-------EYTYKLVCDA 402 (451)
Q Consensus 343 ~~~~~m~~~------~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~-------~~t~~~li~~ 402 (451)
+++++..+. +.......++..+...|...|++++|.++++++.+. ...+. ...+..+...
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 999998775 211233457888899999999999999999998752 11111 1223334444
Q ss_pred HHhcCCCchHHHHHHHHH
Q 013010 403 LNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 403 ~~~~g~~~~a~~~~~~~~ 420 (451)
+...+.+..+...+.+..
T Consensus 254 ~~~~~~~~~a~~~~~~~~ 271 (311)
T 3nf1_A 254 QKDGTSFGEYGGWYKACK 271 (311)
T ss_dssp ----CCSCCCC-------
T ss_pred hhhHHHHHHHHHHHhhcC
Confidence 555555655555555544
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=2.8e-09 Score=89.40 Aligned_cols=163 Identities=14% Similarity=0.016 Sum_probs=76.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 013010 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS 249 (451)
Q Consensus 170 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~ 249 (451)
..|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHH
Confidence 344445555555555555555555554432 2244445555555555555555555555554432 134444555555
Q ss_pred HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 013010 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI 329 (451)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 329 (451)
.+...| ++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus 85 ~~~~~~-----------~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 151 (186)
T 3as5_A 85 TYVQVQ-----------KYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIA 151 (186)
T ss_dssp HHHHHT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHhc-----------CHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHH
Confidence 555555 4555555555444331 2233344444444444444444444444444331 11334444444
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 013010 330 RYYSVVNEIDKAIEMMRKMQ 349 (451)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~m~ 349 (451)
..|...|++++|...+++..
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444443
No 68
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.21 E-value=1.7e-08 Score=106.58 Aligned_cols=190 Identities=17% Similarity=0.213 Sum_probs=113.1
Q ss_pred chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC
Q 013010 105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL 184 (451)
Q Consensus 105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~ 184 (451)
.+...+..++|..+|+.... .....+.++. ..+++++|.++.++. .+..+|..+..++...|+
T Consensus 1058 Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv--------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC--------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCC
Confidence 34445667788888777521 1222233322 566777777777644 134467777777777777
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHH
Q 013010 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~ 264 (451)
+++|.+.|.+. -|...|.-++.+|.+.|++++|.+.|...++.. ++....+.++.+|++.+
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~----~e~~Idt~LafaYAKl~--------- 1181 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETELIFALAKTN--------- 1181 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ccccccHHHHHHHHhhc---------
Confidence 77777777553 356677777777777777777777777665543 23333334777777776
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013010 265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM 344 (451)
Q Consensus 265 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~ 344 (451)
++++...+. . .++...|..+...|...|++++|...|... ..|..+..+|.+.|++++|.+.
T Consensus 1182 --rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1182 --RLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred --CHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence 444322221 1 234444555556666666666666666652 3566666666666666666666
Q ss_pred HHHH
Q 013010 345 MRKM 348 (451)
Q Consensus 345 ~~~m 348 (451)
+++.
T Consensus 1244 arKA 1247 (1630)
T 1xi4_A 1244 ARKA 1247 (1630)
T ss_pred HHHh
Confidence 6544
No 69
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.20 E-value=7.5e-09 Score=109.27 Aligned_cols=252 Identities=12% Similarity=0.054 Sum_probs=158.5
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 188 (451)
.+++++|.++.+... +..+|..+..++.+.|++++|.+.|.+. + +...|..++.+|.+.|++++|
T Consensus 1089 i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~~kEAIdsYiKA---d-----D~say~eVa~~~~~lGkyEEA 1153 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA---D-----DPSSYMEVVQAANTSGNWEEL 1153 (1630)
T ss_pred HhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCHHHHHHHHHhc---C-----ChHHHHHHHHHHHHcCCHHHH
Confidence 345555555555432 4567777777777777777777777442 1 445577777777777777777
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 013010 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI 268 (451)
Q Consensus 189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~ 268 (451)
.+.|...++.. ++....+.++.+|++.+++++...+. . + ++...|..+...|...| ++
T Consensus 1154 IeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-~----~n~ad~~~iGd~le~eg-----------~Y 1211 (1630)
T 1xi4_A 1154 VKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-G----PNNAHIQQVGDRCYDEK-----------MY 1211 (1630)
T ss_pred HHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-C----CCHHHHHHHHHHHHhcC-----------CH
Confidence 77777666543 33333334777777777776533332 1 2 45566666777777777 77
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348 (451)
Q Consensus 269 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 348 (451)
++|..+|... ..|..+..+|++.|++++|.+.+++. -+..+|..+-.+|...|++..|......+
T Consensus 1212 eeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I 1276 (1630)
T 1xi4_A 1212 DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI 1276 (1630)
T ss_pred HHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 7777777763 36777777777777777777777765 25577777777777777777777765532
Q ss_pred HhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 349 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
..++..+..++..|.+.|.+++|+.+++.-+... +-....|.-|..++++.. ++...+.++-..
T Consensus 1277 ------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~-peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1277 ------VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFW 1340 (1630)
T ss_pred ------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC-HHHHHHHHHHHH
Confidence 2345566677777777777777777776555332 222334555555555543 333444444333
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=2.3e-08 Score=94.47 Aligned_cols=275 Identities=13% Similarity=0.030 Sum_probs=192.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHH
Q 013010 136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELV--TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC-RPD----VYAYN 208 (451)
Q Consensus 136 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~ 208 (451)
......+...|++++|...+++.........+ ...+++.+...+...|++++|...+++..+..- ..+ ..+++
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33445566789999999999998776422111 122566777888889999999999988765210 112 23456
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhC----CCCCCC-CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC
Q 013010 209 VVINALCRVGNFNKARFLLEQMELP----GFRCPP-DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283 (451)
Q Consensus 209 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 283 (451)
.+...+...|++++|...+++.... +....| ...++..+...+...| ++++|...+++.....-
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-----------RLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHhh
Confidence 7778889999999999999887543 210002 3456677888899999 88899998888765321
Q ss_pred C----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 013010 284 V----PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYN-----SFIRYYSVVNEIDKAIEMMRKMQNLNH 353 (451)
Q Consensus 284 ~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~ 353 (451)
. ....++..+...+...|++++|...+++.....-.++ ...+. .....+...|++++|...+++......
T Consensus 167 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence 1 1235677788889999999999999998765321111 11221 233447789999999999999876442
Q ss_pred CCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 354 GVP--TSSSYTPIIHALCEAGRVLEARDFLAELVD----GGSVPRE-YTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 354 ~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
..+ ....+..+...+...|++++|.+.+++... .|..++. ..+..+..++...|+.+.|...+++.+.
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 111 122466777889999999999999988763 2332233 3677778889999999999999888774
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=4.3e-09 Score=88.20 Aligned_cols=164 Identities=18% Similarity=0.107 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC
Q 013010 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV 284 (451)
Q Consensus 205 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 284 (451)
..|..+...+...|++++|...|+++.... +.+..++..+...+...| ++++|...+++..+.. +
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~~~~~-~ 73 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD---AFDVDVALHLGIAYVKTG-----------AVDRGTELLERSLADA-P 73 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---SCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---ccChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcC-C
Confidence 445566666777777777777777766543 245666777777777777 6677777777666542 2
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364 (451)
Q Consensus 285 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 364 (451)
.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 150 (186)
T 3as5_A 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAI 150 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHH
Confidence 345666666777777777777777777766542 2356666667777777777777777777776654 3456667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 013010 365 IHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 365 i~~~~~~g~~~~A~~l~~~m~~ 386 (451)
...+...|++++|.+.+++..+
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776654
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.16 E-value=1.9e-09 Score=102.47 Aligned_cols=235 Identities=8% Similarity=-0.056 Sum_probs=174.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCC---CCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--C----CCCHHHHH
Q 013010 138 MGIVFARGNNVKGLWDFLKDMSRRGN---GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR--C----RPDVYAYN 208 (451)
Q Consensus 138 ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~~~~ 208 (451)
....+...|++++|...+++..+... .+.....++..+...|...|++++|...+++..+.- . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55667889999999999999876521 112245788999999999999999999999886621 1 11246788
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCC---CCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc----
Q 013010 209 VVINALCRVGNFNKARFLLEQMELPGFRC---PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK---- 281 (451)
Q Consensus 209 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~---- 281 (451)
.+...|...|++++|...|++..+..-.. +....++..+...|...| ++++|...+++..+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-----------~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS-----------QYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999998876432110 112257888999999999 777887777776651
Q ss_pred CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC
Q 013010 282 GF-VPDVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIPNRVTYNSFIRYYSVVNE---IDKAIEMMRKMQNLNH 353 (451)
Q Consensus 282 ~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~~~ 353 (451)
+. +....++..+...|.+.|++++|.+.+++..+. +-+.....+..+-..|...|+ +++|+.++++. +.
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~ 334 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---ML 334 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TC
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cC
Confidence 33 334567888999999999999999999987653 211223345667778888898 78888888776 22
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 354 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
.......+..+...|...|++++|.+.+++..+
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 123345777888999999999999999998764
No 73
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=6.5e-10 Score=100.25 Aligned_cols=226 Identities=14% Similarity=0.087 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcC-----CCCCccHHhHHHHHHHHHhcCCHH
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-----NGELVTTSSVTCLIKVLGEEGLVN 186 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~~~li~~~~~~g~~~ 186 (451)
+++|+++++..... ..+....++..+...+...|++++|...+++..+.. ...+....++..+...|...|+++
T Consensus 24 ~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 102 (283)
T 3edt_B 24 CKQALEDLEKTSGH-DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102 (283)
T ss_dssp HHHHHHHHHHHHCS-SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHH
Confidence 56667766665522 223356788899999999999999999999887652 222345678999999999999999
Q ss_pred HHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----CCCCCCCHHHHHHHHHHHHhc
Q 013010 187 EALATFYRMKQF------R-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELP-----GFRCPPDVYTYTILISSYCKY 254 (451)
Q Consensus 187 ~A~~~~~~m~~~------g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~p~~~~~~~li~~~~~~ 254 (451)
+|.+.|++..+. . .+....++..+...|...|++++|...|++.... +...+....++..+...|...
T Consensus 103 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (283)
T 3edt_B 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 999999998764 1 1234677888999999999999999999988765 111123457888999999999
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhc-------CCCCCHhhHHHHHHHHHhc-CC------HHHHHHHHHHHHhCCCCC
Q 013010 255 GMQTGCRKAIRRRIWEANHLFRLMLFK-------GFVPDVVAYNCLIDGCCKT-YR------IERALELFDDMNKKGCIP 320 (451)
Q Consensus 255 g~~~~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~-g~------~~~a~~~~~~m~~~g~~p 320 (451)
| ++++|...+++..+. ...+....+...+..+... +. +..+...++..... ...
T Consensus 183 g-----------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 183 G-----------KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp T-----------CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred C-----------CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 9 777888777776542 2233333322222222222 22 11222222111110 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
...++..+...|...|++++|..++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566666677777777777777766554
No 74
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=1.9e-09 Score=97.09 Aligned_cols=207 Identities=13% Similarity=-0.011 Sum_probs=135.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-----CCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHH
Q 013010 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPG-----FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277 (451)
Q Consensus 203 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~ 277 (451)
...++..+...|...|++++|...+++..... ...+....++..+...|...| ++++|...+.+
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~ 110 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG-----------KYKEAEPLCKR 110 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT-----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHH
Confidence 45666777777777777777777777765431 111235678889999999999 66666666666
Q ss_pred HHhc-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 013010 278 MLFK-------GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK------GCIP-NRVTYNSFIRYYSVVNEIDKAIE 343 (451)
Q Consensus 278 m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~ 343 (451)
.... .-+....++..+...|...|++++|.+.+++..+. +-.| ...++..+...|...|++++|..
T Consensus 111 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 111 ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5542 11334677888999999999999999999998764 2233 35778889999999999999999
Q ss_pred HHHHHHhcC------CCCCChh-hHHHHHHHHHHcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCc
Q 013010 344 MMRKMQNLN------HGVPTSS-SYTPIIHALCEAGR------VLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS 410 (451)
Q Consensus 344 ~~~~m~~~~------~~~p~~~-~~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 410 (451)
++++..+.. ...+... .|..+...+...+. +..+...+..... .......++..+...|...|+++
T Consensus 191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~ 269 (283)
T 3edt_B 191 LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLE 269 (283)
T ss_dssp HHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHH
Confidence 999887641 1123333 33333333333222 2222222221110 11123567888899999999999
Q ss_pred hHHHHHHHHHH
Q 013010 411 LLDDGLRKRIR 421 (451)
Q Consensus 411 ~a~~~~~~~~~ 421 (451)
.|.+.+++.++
T Consensus 270 ~A~~~~~~al~ 280 (283)
T 3edt_B 270 AAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.11 E-value=3.2e-08 Score=93.55 Aligned_cols=269 Identities=10% Similarity=0.005 Sum_probs=188.3
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCH----HhHHHHHHHHHccCChhHHHHHHHHHHHcCC---CCCccHHhHHHHHHH
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNE----MTCKEMGIVFARGNNVKGLWDFLKDMSRRGN---GELVTTSSVTCLIKV 178 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~~~li~~ 178 (451)
+...+++++|...++....... ..+. ..++.+...+...|++++|...+++...... .+.....++..+...
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4456789999999999876421 1122 2566677888899999999999988765321 111123446677888
Q ss_pred HHhcCCHHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCC--CHHHHHHHHH
Q 013010 179 LGEEGLVNEALATFYRMKQF----RCR--P-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP--DVYTYTILIS 249 (451)
Q Consensus 179 ~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p--~~~~~~~li~ 249 (451)
+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.........+ ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 89999999999999988652 222 2 2456677888899999999999999987654321111 3467888888
Q ss_pred HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC--HhhHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---
Q 013010 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD--VVAYN----CLIDGCCKTYRIERALELFDDMNKKGCIP--- 320 (451)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p--- 320 (451)
.+...| ++++|...+++.....-.++ ..... ..+..+...|++++|...+++.......+
T Consensus 183 ~~~~~g-----------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 183 CSLARG-----------DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp HHHHHT-----------CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHcC-----------CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 999999 88888888887764311111 11111 23344779999999999999887643221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG---VPTS-SSYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
....+..+...+...|++++|...+++....... .++. ..+..+..++...|+.++|...+.+...
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1335677788899999999999999987653210 1122 3566677788999999999999988764
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.11 E-value=1.5e-08 Score=96.10 Aligned_cols=298 Identities=8% Similarity=-0.060 Sum_probs=198.1
Q ss_pred hcCHHHHHHHHHHHhhcC-CCCCC--HHhHHHHHHHH--HccCChhHHH---------HHHHHHHHcCCCCCc--cHHhH
Q 013010 109 TLGLNKATEFYHWVERFF-DFFHN--EMTCKEMGIVF--ARGNNVKGLW---------DFLKDMSRRGNGELV--TTSSV 172 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~-~~~~~--~~~~~~ll~~~--~~~g~~~~a~---------~~~~~m~~~~~~~~~--~~~~~ 172 (451)
..++++|..+++.+.... ....| ...|-.++..- .-.+.++.+. +.++.+.....+.+. ....+
T Consensus 25 ~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~ 104 (378)
T 3q15_A 25 QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSL 104 (378)
T ss_dssp TTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHH
Confidence 456899999999876632 22223 33344444431 1112222233 666665443211000 11122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----CCHHH
Q 013010 173 TCLIKVLGEEGLVNEALATFYRMKQFRC-RP----DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP----PDVYT 243 (451)
Q Consensus 173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----p~~~~ 243 (451)
......+...|++++|...|++..+..- .+ ...++..+...|...|+++.|...+.+......... ....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 2334456789999999999999876421 12 256788888999999999999999988754311100 12567
Q ss_pred HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 013010 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK----GFV-PDVVAYNCLIDGCCKTYRIERALELFDDMNK--- 315 (451)
Q Consensus 244 ~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--- 315 (451)
++.+...|...| ++++|.+.|++..+. +-. ....+++.+...|...|++++|.+.+++..+
T Consensus 185 ~~~lg~~y~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 185 LFVIAGNYDDFK-----------HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp HHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 888999999999 677777777665432 211 1235678888999999999999999998876
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC---hhhHHHHHHHHHHcCC---HHHHHHHHHHHHhC
Q 013010 316 --KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT---SSSYTPIIHALCEAGR---VLEARDFLAELVDG 387 (451)
Q Consensus 316 --~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~ 387 (451)
.. +....++..+...|.+.|++++|...+++..+......+ ...+..+-..+...|+ +.+|..++++ .
T Consensus 254 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~ 329 (378)
T 3q15_A 254 EKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---K 329 (378)
T ss_dssp HHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---T
T ss_pred hhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---C
Confidence 32 223678888999999999999999999998875432112 2345555556667788 7777777765 3
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010 388 GSVPR-EYTYKLVCDALNAAEEPSLLDDGLRKRIR 421 (451)
Q Consensus 388 g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 421 (451)
+..|+ ...+..+...|...|+++.|.+.+++.++
T Consensus 330 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 330 NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33332 45677899999999999999999988774
No 77
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.10 E-value=4.6e-08 Score=97.30 Aligned_cols=216 Identities=11% Similarity=0.000 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 013010 150 GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE-------EGLVN-------EALATFYRMKQFRCRPDVYAYNVVINALC 215 (451)
Q Consensus 150 ~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 215 (451)
.+..+|++...... .+...|..+...+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.
T Consensus 256 ~a~~~y~~al~~~p---~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 256 RVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67778888877642 256778888888775 69977 99999999986323446889999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCC-H-HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC-HhhHHH
Q 013010 216 RVGNFNKARFLLEQMELPGFRCPPD-V-YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD-VVAYNC 292 (451)
Q Consensus 216 ~~g~~~~a~~~~~~m~~~g~~~~p~-~-~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ 292 (451)
+.|++++|..+|+++.+.. |+ . ..|..++..+.+.| ++++|..+|++..+. .|+ ...|-.
T Consensus 333 ~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~Al~~--~~~~~~~~~~ 395 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIE----DIDPTLVYIQYMKFARRAE-----------GIKSGRMIFKKARED--ARTRHHVYVT 395 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSS----SSCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHTC--TTCCTHHHHH
T ss_pred hcCCHHHHHHHHHHHhCcc----ccCchHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhc--cCCchHHHHH
Confidence 9999999999999999864 43 3 58888888888888 999999999998875 232 223322
Q ss_pred HHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHH
Q 013010 293 LID-GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT--SSSYTPIIHALC 369 (451)
Q Consensus 293 li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~ 369 (451)
... .+...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++....+...|+ ...|...+....
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 222 2346899999999999887752 225788999999999999999999999999987532232 347888888888
Q ss_pred HcCCHHHHHHHHHHHHh
Q 013010 370 EAGRVLEARDFLAELVD 386 (451)
Q Consensus 370 ~~g~~~~A~~l~~~m~~ 386 (451)
..|+.+.+..++.++.+
T Consensus 475 ~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFT 491 (530)
T ss_dssp HSSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 89999999999988875
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.06 E-value=6.5e-09 Score=106.44 Aligned_cols=166 Identities=16% Similarity=0.035 Sum_probs=140.8
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+...|+.|...|.+.|++++|.+.|++..+.... +..+|+.+..+|.+.|++++|++.|++..+.. +-+..+|+.+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4678999999999999999999999999887532 56789999999999999999999999998743 2257889999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY 290 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 290 (451)
..+|...|++++|++.|++..+.. +-+..+|+.+...|.+.| ++++|++.|++..+.. +-+...+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~---P~~~~a~~~Lg~~~~~~g-----------~~~eAi~~~~~Al~l~-P~~~~a~ 148 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN---PAFADAHSNLASIHKDSG-----------NIPEAIASYRTALKLK-PDFPDAY 148 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhC-CCChHHH
Confidence 999999999999999999988765 347789999999999999 8899999999888752 2246788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 291 NCLIDGCCKTYRIERALELFDDMNK 315 (451)
Q Consensus 291 ~~li~~~~~~g~~~~a~~~~~~m~~ 315 (451)
..+..++...|++++|.+.+++..+
T Consensus 149 ~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 149 CNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHHHH
Confidence 8899999999999999888877654
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.04 E-value=1.1e-08 Score=104.70 Aligned_cols=163 Identities=15% Similarity=0.118 Sum_probs=85.8
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 013010 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246 (451)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~ 246 (451)
+..+|+.|-..|.+.|++++|++.|++..+. .| +..+|+.+..+|.+.|++++|+..|++..+.. |-+..+|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHH
Confidence 3455566666666666666666666665553 23 34555555556666666666666665555443 224555555
Q ss_pred HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 013010 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTY 325 (451)
Q Consensus 247 li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~ 325 (451)
+..+|.+.| ++++|.+.|++..+.. +-+...|+.+..+|...|++++|.+.|++..+. .| +...|
T Consensus 83 Lg~~l~~~g-----------~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~ 148 (723)
T 4gyw_A 83 MGNTLKEMQ-----------DVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAY 148 (723)
T ss_dssp HHHHHHHTT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHH
T ss_pred HHHHHHHcC-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 555555555 5555555555554431 113344555555555555555555555554443 23 34445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 013010 326 NSFIRYYSVVNEIDKAIEMMRKMQ 349 (451)
Q Consensus 326 ~~li~~~~~~g~~~~A~~~~~~m~ 349 (451)
..+...|...|++++|.+.+++..
T Consensus 149 ~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 149 CNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred hhhhhHHHhcccHHHHHHHHHHHH
Confidence 555555555555555555554443
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.98 E-value=7.7e-08 Score=91.21 Aligned_cols=234 Identities=9% Similarity=-0.010 Sum_probs=171.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCC---CCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCC-CHHHHH
Q 013010 138 MGIVFARGNNVKGLWDFLKDMSRRGN---GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF----R-CRP-DVYAYN 208 (451)
Q Consensus 138 ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p-~~~~~~ 208 (451)
....+...|++++|...+++..+... .+.....++..+...|...|+++.|...+++..+. + ..+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44556789999999999999876521 11234567888999999999999999999887652 1 111 256788
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhC----CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh----
Q 013010 209 VVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF---- 280 (451)
Q Consensus 209 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~---- 280 (451)
.+...|...|++++|...|++..+. +.. .....++..+...|...| ++++|...+++..+
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~y~~~~-----------~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQND-RFIAISLLNIANSYDRSG-----------DDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999887653 211 112357888999999999 77777777776654
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC
Q 013010 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG----CIPNRVTYNSFIRYYSVVNE---IDKAIEMMRKMQNLNH 353 (451)
Q Consensus 281 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~~~ 353 (451)
.+.+....++..+...+.+.|++++|...+++..+.. -+.....+..+-..|...++ +++|+..+++. +.
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~ 331 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NL 331 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TC
T ss_pred hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CC
Confidence 1223336778889999999999999999999877642 22223456666667777788 78888887763 22
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 354 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
.......+..+...|...|++++|.+.|++..+
T Consensus 332 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 332 HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122334667788899999999999999988764
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.97 E-value=1.4e-07 Score=82.48 Aligned_cols=199 Identities=11% Similarity=-0.008 Sum_probs=129.0
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (451)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l 247 (451)
+...+......+...|++++|...|++..+..-+++...+..+..++...|++++|.+.|++..... |.+..+|..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN---YNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC---cchHHHHHHH
Confidence 3455666666777777777777777777664432566666667777777777777777777777654 2355667777
Q ss_pred HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV-------VAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320 (451)
Q Consensus 248 i~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 320 (451)
...|...| ++++|...+++..+.. +.+. ..|..+-..+...|++++|.+.|+...+. .|
T Consensus 83 ~~~~~~~~-----------~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p 148 (228)
T 4i17_A 83 SAAYRDMK-----------NNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TS 148 (228)
T ss_dssp HHHHHHTT-----------CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SC
T ss_pred HHHHHHcc-----------cHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CC
Confidence 77777777 7777777777766542 1122 34666666778889999999999988776 45
Q ss_pred C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 013010 321 N---RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394 (451)
Q Consensus 321 ~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 394 (451)
+ ...+..+-..|... +..+++++...+ ..+...|.... ....+.+++|...+++..+. .|+..
T Consensus 149 ~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~--~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 149 KKWKTDALYSLGVLFYNN-----GADVLRKATPLA--SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGT--TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred CcccHHHHHHHHHHHHHH-----HHHHHHHHHhcc--cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 4 45566666666443 445566666654 34445554443 33456688899988888764 35433
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.94 E-value=1.6e-07 Score=81.97 Aligned_cols=196 Identities=14% Similarity=0.006 Sum_probs=146.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281 (451)
Q Consensus 202 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~ 281 (451)
.|...+......+...|++++|...|++..+..- +++...+..+..++...| ++++|...|++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~al~~ 71 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--NQDSVTAYNCGVCADNIK-----------KYKEAADYFDIAIKK 71 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhh-----------cHHHHHHHHHHHHHh
Confidence 4567888888999999999999999999887652 167788888999999999 899999999988875
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 013010 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NR-------VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH 353 (451)
Q Consensus 282 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~-------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 353 (451)
. +-+...+..+...|...|++++|.+.+++..+.. | +. ..|..+-..+...|++++|++.|++..+..
T Consensus 72 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~- 147 (228)
T 4i17_A 72 N-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT- 147 (228)
T ss_dssp T-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-
T ss_pred C-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-
Confidence 3 2256778889999999999999999999988753 4 34 457777778888999999999999998764
Q ss_pred CCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010 354 GVP--TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423 (451)
Q Consensus 354 ~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g 423 (451)
+- +...|..+...|...| ..+++++...+ ..+...|.... ....|.++.|...+++.++..
T Consensus 148 -p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 148 -SKKWKTDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred -CCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 23 3567777777776544 34445554433 22344454443 334456788888888888643
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=1.4e-07 Score=85.26 Aligned_cols=182 Identities=10% Similarity=0.062 Sum_probs=131.3
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 013010 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267 (451)
Q Consensus 188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~ 267 (451)
|...|++..+.+ .++..++..+..++...|++++|++++.+....+-. .-+...+..++..+.+.| +
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-~~~lea~~l~vqi~L~~~-----------r 151 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA-EGTTELLLLAIEVALLNN-----------N 151 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-TTHHHHHHHHHHHHHHTT-----------C
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-cCcHHHHHHHHHHHHHCC-----------C
Confidence 778888887655 456666677888888899999999999988766521 136778888899999999 8
Q ss_pred HHHHHHHHHHHHhcCCCC-----CHhhHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 013010 268 IWEANHLFRLMLFKGFVP-----DVVAYNCLIDGC--CKTY--RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338 (451)
Q Consensus 268 ~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 338 (451)
.+.|.+.+++|.+. .| +..+...+..++ ...| +..+|+.+|+++.+. .|+..+-..++.++.+.|++
T Consensus 152 ~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~ 227 (310)
T 3mv2_B 152 VSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNI 227 (310)
T ss_dssp HHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCH
Confidence 88999999998765 45 245555566553 2334 889999999998765 35544555556688889999
Q ss_pred HHHHHHHHHHHhcC----C----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 013010 339 DKAIEMMRKMQNLN----H----GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG 388 (451)
Q Consensus 339 ~~A~~~~~~m~~~~----~----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 388 (451)
++|.+.++.+.+.. - .+-++.+...+|......|+ +|.+++.++.+..
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 99999998766531 0 03356666566666666676 8888888888743
No 84
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=1.3e-07 Score=74.22 Aligned_cols=129 Identities=18% Similarity=0.197 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 013010 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322 (451)
Q Consensus 243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 322 (451)
.|..+...+...| ++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+.
T Consensus 3 ~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 69 (136)
T 2fo7_A 3 AWYNLGNAYYKQG-----------DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSA 69 (136)
T ss_dssp HHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHcC-----------cHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCch
Confidence 4555666666666 6677777777666542 2345566666667777777777777777766543 2245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 323 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
..+..+...|...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.+.++.+
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666777777777777777777776654 34556666667777777777777777776654
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=9.3e-08 Score=75.16 Aligned_cols=130 Identities=14% Similarity=0.148 Sum_probs=108.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 013010 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (451)
Q Consensus 134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 213 (451)
.|..+...+...|++++|..+++.+.+.+.. +...+..+...+...|++++|...|+++.+.+ +.+...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 4667888888999999999999998876522 56678888889999999999999999988754 3467788888899
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010 214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281 (451)
Q Consensus 214 ~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~ 281 (451)
+...|++++|.++++++.... +.+..++..+...+.+.| ++++|...+.++...
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQG-----------DYDEAIEYYQKALEL 132 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHc-----------cHHHHHHHHHHHHcc
Confidence 999999999999999988764 346788888999999999 888999998887754
No 86
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.88 E-value=1.6e-06 Score=84.27 Aligned_cols=278 Identities=8% Similarity=-0.049 Sum_probs=167.1
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChh---HHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC--
Q 013010 110 LGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVK---GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL-- 184 (451)
Q Consensus 110 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~-- 184 (451)
++.++|+..|+...+. |. ...+..|...|...+..+ ++.+.+......| +...+..|...|...+.
T Consensus 88 ~~~~~A~~~~~~Aa~~-g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g-----~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 88 AEHHEAESLLKKAFAN-GE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG-----YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp HHHHHHHHHHHHHHHT-TC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-----CTTHHHHHHHHHHHHTCGG
T ss_pred cCHHHHHHHHHHHHHC-CC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcc
Confidence 3567888888877753 32 225556666666554433 3444444444444 22345566666666663
Q ss_pred --HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchh
Q 013010 185 --VNEALATFYRMKQFRCRPDVYAYNVVINALCRVG---NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259 (451)
Q Consensus 185 --~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~ 259 (451)
.+++..++..... .+...+..+...|...| +.++|.+.|++..+.|. ++...+..|...|......
T Consensus 159 ~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~---~~a~~~~~Lg~~y~~g~~~-- 229 (452)
T 3e4b_A 159 QHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT---VTAQRVDSVARVLGDATLG-- 229 (452)
T ss_dssp GGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---SCHHHHHHHHHHHTCGGGS--
T ss_pred cCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCC--
Confidence 3344444444333 22337777777777788 78888888888887773 5665556666666443100
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 013010 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG-C--CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336 (451)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 336 (451)
.+++++|...|+... .| +...+..+-.. + ...+++++|.+.|+...+.| +...+..|-..|. .|
T Consensus 230 -----~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 230 -----TPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EG 296 (452)
T ss_dssp -----SCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HC
T ss_pred -----CCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cC
Confidence 016778888887766 32 44555555555 3 35778888888888877776 5666666666665 44
Q ss_pred -----CHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 013010 337 -----EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE----AGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA-- 405 (451)
Q Consensus 337 -----~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~-- 405 (451)
++++|.+.|++.. .| +...+..|-..|.. ..+.++|.++|....+.|.. .....|-..|..
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN---SADFAIAQLFSQGK 368 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT---THHHHHHHHHHSCT
T ss_pred CCCCCCHHHHHHHHHHHh-CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH---HHHHHHHHHHHhCC
Confidence 8888888888776 33 34555555555554 33788888888887776642 233334444432
Q ss_pred --cCCCchHHHHHHHHHHhchHH
Q 013010 406 --AEEPSLLDDGLRKRIRDGIEY 426 (451)
Q Consensus 406 --~g~~~~a~~~~~~~~~~g~~~ 426 (451)
..+.+.|...+.+..+.|...
T Consensus 369 g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTCCHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHH
Confidence 345666777777766666543
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.87 E-value=1.6e-07 Score=85.64 Aligned_cols=211 Identities=11% Similarity=-0.058 Sum_probs=143.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHhcCChH
Q 013010 147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF----RCRPD-VYAYNVVINALCRVGNFN 221 (451)
Q Consensus 147 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~ 221 (451)
++++|...+++. ...|...|++++|...|++..+. |-.++ ..+|+.+..+|...|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 477787777665 33566789999999888877552 21122 568888999999999999
Q ss_pred HHHHHHHHhhhCCCCC-CC--CHHHHHHHHHHHHhc-CCchhhhHHHHHHHHHHHHHHHHHHhc----CCCCC-HhhHHH
Q 013010 222 KARFLLEQMELPGFRC-PP--DVYTYTILISSYCKY-GMQTGCRKAIRRRIWEANHLFRLMLFK----GFVPD-VVAYNC 292 (451)
Q Consensus 222 ~a~~~~~~m~~~g~~~-~p--~~~~~~~li~~~~~~-g~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ 292 (451)
+|...|++........ .+ -..+++.+...|... | ++++|...|++..+. +-.+. ..+++.
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg-----------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 163 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH-----------DYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 9999888775432100 01 145788899999996 9 777777777766542 11111 356888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChh---hHHH
Q 013010 293 LIDGCCKTYRIERALELFDDMNKKGCIPNR------VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS---SYTP 363 (451)
Q Consensus 293 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~---~~~~ 363 (451)
+...+...|++++|...|++..+....... .+|..+..+|...|++++|...|++..+.....++.. .+..
T Consensus 164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~ 243 (292)
T 1qqe_A 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKS 243 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence 899999999999999999998876432211 2567778888999999999999999876432112211 3444
Q ss_pred HHHHHH--HcCCHHHHHHHHHHHH
Q 013010 364 IIHALC--EAGRVLEARDFLAELV 385 (451)
Q Consensus 364 li~~~~--~~g~~~~A~~l~~~m~ 385 (451)
++.+|. ..+++++|.+.|+.+.
T Consensus 244 l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 244 LIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHhccCC
Confidence 555554 3466888888876654
No 88
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.87 E-value=1.8e-07 Score=90.93 Aligned_cols=272 Identities=12% Similarity=0.080 Sum_probs=177.0
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccC-----ChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH--
Q 013010 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGN-----NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV-- 185 (451)
Q Consensus 113 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~-- 185 (451)
++|++.|+...+. +...+..|...+...+ ++++|...|++..+.|.. ..+..|...|...+..
T Consensus 55 ~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~-----~A~~~Lg~~y~~~~~~~~ 124 (452)
T 3e4b_A 55 KQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG-----NTLIPLAMLYLQYPHSFP 124 (452)
T ss_dssp ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS-----SCHHHHHHHHHHCGGGCT
T ss_pred HHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHhCCCCCC
Confidence 8888888887632 5556666777555554 778899999888887632 2566777777665543
Q ss_pred -HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhh
Q 013010 186 -NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK----ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260 (451)
Q Consensus 186 -~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~ 260 (451)
.++.+.+......| +...+..+...|...+.++. +..++..... + .|+ .+..|...|...|...
T Consensus 125 ~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~-~---~~~--a~~~Lg~~~~~~g~~~-- 193 (452)
T 3e4b_A 125 NVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN-T---TDI--CYVELATVYQKKQQPE-- 193 (452)
T ss_dssp TCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-T---CTT--HHHHHHHHHHHTTCHH--
T ss_pred CHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc-C---CHH--HHHHHHHHHHHcCCcc--
Confidence 34555555555544 34566666777777775544 4444444332 2 144 7888888888877443
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--H
Q 013010 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT----YRIERALELFDDMNKKGCIPNRVTYNSFIRY-Y--S 333 (451)
Q Consensus 261 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~--~ 333 (451)
+.++|...|+...+.| .++...+..+-..|... +++++|.+.|+... .| +...+..|-.. | .
T Consensus 194 ------~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~ 262 (452)
T 3e4b_A 194 ------QQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFP 262 (452)
T ss_dssp ------HHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSG
T ss_pred ------cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCC
Confidence 7889999999998876 34455445566666554 68999999999987 43 45556666555 3 4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 013010 334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG-----RVLEARDFLAELVDGGSVPREYTYKLVCDALNA--- 405 (451)
Q Consensus 334 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~--- 405 (451)
..++.++|.+.|++..+.| +...+..|-..|. .| ++++|.++|++.. . -+...+..|-..|..
T Consensus 263 ~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g 333 (452)
T 3e4b_A 263 ELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYL 333 (452)
T ss_dssp GGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCC
Confidence 6899999999999998876 4667777777776 55 9999999998877 3 356667777666666
Q ss_pred -cCCCchHHHHHHHHHHhchH
Q 013010 406 -AEEPSLLDDGLRKRIRDGIE 425 (451)
Q Consensus 406 -~g~~~~a~~~~~~~~~~g~~ 425 (451)
..+.++|.+.+++..+.|..
T Consensus 334 ~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 334 GKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp SSCCHHHHHHHHHHHHTTTCT
T ss_pred CCcCHHHHHHHHHHHHhhChH
Confidence 33888899999988876654
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.86 E-value=8.9e-08 Score=87.35 Aligned_cols=199 Identities=9% Similarity=-0.050 Sum_probs=144.7
Q ss_pred HHHHHccCChhHHHHHHHHHHHcC---CCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CC--CHHHHHHH
Q 013010 139 GIVFARGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC---RP--DVYAYNVV 210 (451)
Q Consensus 139 l~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~~~~~l 210 (451)
...|...|++++|...|.+..... ..+.....+|+.+..+|.+.|++++|+..|++..+... .+ -..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556778999999999998776542 11112356899999999999999999999998866311 11 14578889
Q ss_pred HHHHHhc-CChHHHHHHHHHhhhCCCCC-CC--CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 013010 211 INALCRV-GNFNKARFLLEQMELPGFRC-PP--DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286 (451)
Q Consensus 211 i~~~~~~-g~~~~a~~~~~~m~~~g~~~-~p--~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 286 (451)
...|... |++++|...|++.....-.. .+ ...++..+...|.+.| ++++|...|++..+......
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-----------QYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHhcCC
Confidence 9999996 99999999999886542100 01 1457888999999999 99999999999887543222
Q ss_pred Hh------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 013010 287 VV------AYNCLIDGCCKTYRIERALELFDDMNKKGCIPN------RVTYNSFIRYYS--VVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 287 ~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~t~~~li~~~~--~~g~~~~A~~~~~~m~~ 350 (451)
.. .|..+..++...|++++|...|++..+. .|+ ...+..++.+|. ..+++++|+..|+.+..
T Consensus 193 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 21 5677778889999999999999998764 232 123445566664 45678888888877654
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.81 E-value=1.6e-07 Score=83.89 Aligned_cols=216 Identities=10% Similarity=-0.024 Sum_probs=142.0
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHH
Q 013010 130 HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC--RPDVYAY 207 (451)
Q Consensus 130 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~ 207 (451)
.+...+-.+...+.+.|++++|...|+.+.+.....+.....+..+..+|...|++++|...|++..+..- +.....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 35566777888889999999999999999988643322366788899999999999999999999988521 1224567
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 013010 208 NVVINALCR--------VGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278 (451)
Q Consensus 208 ~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m 278 (451)
..+..++.. .|++++|...|++..... |+ ......+.... .....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~a~~~~~------------------~~~~~~~-- 148 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY----PNHELVDDATQKIR------------------ELRAKLA-- 148 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC----TTCTTHHHHHHHHH------------------HHHHHHH--
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC----cCchhHHHHHHHHH------------------HHHHHHH--
Confidence 777888888 999999999999998764 32 22222211111 0000000
Q ss_pred HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhc----------CCHHHHHHHHH
Q 013010 279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-P-NRVTYNSFIRYYSVV----------NEIDKAIEMMR 346 (451)
Q Consensus 279 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~t~~~li~~~~~~----------g~~~~A~~~~~ 346 (451)
..+-.+...|.+.|++++|...|+.+.+..-. + ....+..+..+|... |++++|...|+
T Consensus 149 ---------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 219 (261)
T 3qky_A 149 ---------RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE 219 (261)
T ss_dssp ---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH
Confidence 11344566777888888888888887765211 1 234566666677655 77888888888
Q ss_pred HHHhcCCCCCC-hhhHHHHHHHHHHcCCHHHHH
Q 013010 347 KMQNLNHGVPT-SSSYTPIIHALCEAGRVLEAR 378 (451)
Q Consensus 347 ~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 378 (451)
++.+.....|. ......+-..+.+.++++++.
T Consensus 220 ~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 220 RLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88776421111 124444445555555555443
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.77 E-value=9.6e-07 Score=78.80 Aligned_cols=207 Identities=13% Similarity=0.043 Sum_probs=147.1
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHH
Q 013010 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD----VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT 243 (451)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~ 243 (451)
+...+-.+...+.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|...|++..+..-..+....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 55667788888999999999999999998853 43 6788888999999999999999999998764211123566
Q ss_pred HHHHHHHHHh--------cCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010 244 YTILISSYCK--------YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV-VAYNCLIDGCCKTYRIERALELFDDMN 314 (451)
Q Consensus 244 ~~~li~~~~~--------~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~ 314 (451)
+..+..++.. .| ++++|...|++..+. .|+. ....++.. +..+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~ 144 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQT-----------DTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELR 144 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCH-----------HHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHH
T ss_pred HHHHHHHHHHhcccccccch-----------hHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHH
Confidence 7778888888 77 999999999999875 3432 22222211 11111
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHc----------CCHHHHHHHHHH
Q 013010 315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEA----------GRVLEARDFLAE 383 (451)
Q Consensus 315 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~----------g~~~~A~~l~~~ 383 (451)
.. ....+..+...|...|++++|+..|+++.+.....+ ....+..+..+|... |++++|...|++
T Consensus 145 ~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 145 AK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp HH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 10 012255677889999999999999999988653111 345677788888766 899999999999
Q ss_pred HHhCCCCCC----HHHHHHHHHHHHhcCCC
Q 013010 384 LVDGGSVPR----EYTYKLVCDALNAAEEP 409 (451)
Q Consensus 384 m~~~g~~p~----~~t~~~li~~~~~~g~~ 409 (451)
.++.. |+ ...+..+-..+.+.|++
T Consensus 221 ~~~~~--p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 221 LLQIF--PDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHC--TTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHC--CCChHHHHHHHHHHHHHHHHHHh
Confidence 98753 43 24455555555554443
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.75 E-value=9.4e-07 Score=76.06 Aligned_cols=169 Identities=9% Similarity=-0.055 Sum_probs=98.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHH----------------HHHHHHhcCCHHHHHHHHHHHhhCC
Q 013010 136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC----------------LIKVLGEEGLVNEALATFYRMKQFR 199 (451)
Q Consensus 136 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g 199 (451)
-.....+.+.|++++|...|+...+... .+...|.. +..+|.+.|++++|...|++..+..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNI---DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCH---HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3344556678888888888888777642 13444555 6677777777777777777776643
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279 (451)
Q Consensus 200 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~ 279 (451)
+-+...|..+..+|...|++++|...|++..+.. |-+..++..+...|...|. .....+...+....
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~~~---------~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE---ADNLAANIFLGNYYYLTAE---------QEKKKLETDYKKLS 151 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHH---------HHHHHHHHHHC---
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHh
Confidence 2256667777777777777777777777776654 2356666666666655441 02333444444432
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 013010 280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT 324 (451)
Q Consensus 280 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 324 (451)
. ..|....+...-.++...|++++|...|++..+. .|+...
T Consensus 152 ~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 152 S--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred C--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 1 1122222222333445566677777777766654 455443
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.71 E-value=2.3e-06 Score=77.38 Aligned_cols=182 Identities=10% Similarity=0.020 Sum_probs=135.5
Q ss_pred HHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 013010 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVVINALCRVGNFNKARFLLEQ 229 (451)
Q Consensus 151 a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 229 (451)
|...|++....+ . .+..++..+...+...|++++|++++.+....|- .-+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~-~--~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDK-Q--NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTS-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-C--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777776654 2 2344556888999999999999999999876553 23677888899999999999999999999
Q ss_pred hhhCCCCCCC-----CHHHHHHHHHHHHhc--CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 013010 230 MELPGFRCPP-----DVYTYTILISSYCKY--GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302 (451)
Q Consensus 230 m~~~g~~~~p-----~~~~~~~li~~~~~~--g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 302 (451)
|.+.. | +..+...|..+++.. |. +++.+|..+|+++.+. .|+..+-..++.++.+.|+
T Consensus 162 ~~~~~----~d~~~~~d~~l~~Laea~v~l~~g~---------~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~ 226 (310)
T 3mv2_B 162 YTNAI----EDTVSGDNEMILNLAESYIKFATNK---------ETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRN 226 (310)
T ss_dssp HHHHS----CHHHHHHHHHHHHHHHHHHHHHHTC---------STTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTC
T ss_pred HHhcC----ccccccchHHHHHHHHHHHHHHhCC---------ccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCC
Confidence 98764 6 356666677664332 21 1778999999999765 4554444556668999999
Q ss_pred HHHHHHHHHHHHhC-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 303 IERALELFDDMNKK-----GC---IP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 303 ~~~a~~~~~~m~~~-----g~---~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
+++|.+.++.+.+. .. .| |..+...+|..+...|+ +|.+++.++.+..
T Consensus 227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 99999999976653 11 24 56777566666666676 8999999999865
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.71 E-value=2.2e-06 Score=74.05 Aligned_cols=176 Identities=10% Similarity=-0.027 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC----CHHHH
Q 013010 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG----LVNEA 188 (451)
Q Consensus 113 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A 188 (451)
.+|+..|+...+. -+...+..|...|...+++++|.+.|++..+.| +...+..|-..|.. + +.++|
T Consensus 3 ~eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp -CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred chHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 3566677776653 366778888888888899999999999888876 45567777777777 6 89999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHh----cCCc
Q 013010 189 LATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPD---VYTYTILISSYCK----YGMQ 257 (451)
Q Consensus 189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~p~---~~~~~~li~~~~~----~g~~ 257 (451)
...|++..+.| +...+..|-..|.. .+++++|..+|++..+.| |+ ..++..|-..|.. .+
T Consensus 73 ~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~----~~~~~~~a~~~Lg~~y~~g~g~~~-- 143 (212)
T 3rjv_A 73 RQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS----ESDAAVDAQMLLGLIYASGVHGPE-- 143 (212)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST----TSHHHHHHHHHHHHHHHHTSSSSC--
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC----CCcchHHHHHHHHHHHHcCCCCCC--
Confidence 99999888754 56777777777776 788899999999888776 42 6778888888877 44
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 013010 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT-Y-----RIERALELFDDMNKKGC 318 (451)
Q Consensus 258 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~ 318 (451)
++++|...|++..+. ..+...+..|-..|... | +.++|...|+...+.|.
T Consensus 144 ---------d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 144 ---------DDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp ---------CHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred ---------CHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 788888888887765 22444566666666543 2 78888888888777663
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.70 E-value=2.4e-06 Score=73.77 Aligned_cols=176 Identities=13% Similarity=-0.039 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----ChHHHHH
Q 013010 150 GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG----NFNKARF 225 (451)
Q Consensus 150 ~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~~ 225 (451)
+|.+.|++..+.| +...+..|-..|...+++++|...|++..+.| +...+..+-..|.. + ++++|.+
T Consensus 4 eA~~~~~~aa~~g-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 4 EPGSQYQQQAEAG-----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp CTTHHHHHHHHTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred hHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 4566677666665 55567777777777788888888888877754 55666666666666 5 7777888
Q ss_pred HHHHhhhCCCCCCCCHHHHHHHHHHHHh----cCCchhhhHHHHHHHHHHHHHHHHHHhcCCC-CCHhhHHHHHHHHHh-
Q 013010 226 LLEQMELPGFRCPPDVYTYTILISSYCK----YGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PDVVAYNCLIDGCCK- 299 (451)
Q Consensus 226 ~~~~m~~~g~~~~p~~~~~~~li~~~~~----~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~- 299 (451)
+|++..+.| +..++..|-..|.. .+ ++++|...|++..+.|.. .+...+..|-..|..
T Consensus 75 ~~~~A~~~g-----~~~a~~~Lg~~y~~g~g~~~-----------d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 75 LAEKAVEAG-----SKSGEIVLARVLVNRQAGAT-----------DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp HHHHHHHTT-----CHHHHHHHHHHHTCGGGSSC-----------CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCC-----CHHHHHHHHHHHHcCCCCcc-----------CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 877776665 44566666666654 33 667777777776665421 014556666666666
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcC
Q 013010 300 ---TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV-N-----EIDKAIEMMRKMQNLN 352 (451)
Q Consensus 300 ---~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 352 (451)
.+++++|...|+...+.+ .+...+..|-..|... | +.++|...|+...+.|
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 566777777777666551 2333455555555432 2 6666666666666655
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.70 E-value=1.3e-06 Score=76.10 Aligned_cols=184 Identities=10% Similarity=-0.031 Sum_probs=124.6
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV----YAY 207 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~ 207 (451)
...+..+...+.+.|++++|...|+.+.+.....+.....+..+..+|.+.|++++|+..|+++.+.. |+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 34455566777888999999999988887654332334567778888888999999999998887743 332 234
Q ss_pred HHHHHHHHh------------------cCChHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 013010 208 NVVINALCR------------------VGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQTGCRKAIRRRI 268 (451)
Q Consensus 208 ~~li~~~~~------------------~g~~~~a~~~~~~m~~~g~~~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~~ 268 (451)
..+..++.. .|++++|...|+++.+.. |+ ..++.+... .+ .+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----P~~~~a~~a~~~----l~-----------~~ 142 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY----PNSQYTTDATKR----LV-----------FL 142 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC----TTCTTHHHHHHH----HH-----------HH
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC----cCChhHHHHHHH----HH-----------HH
Confidence 334444433 578999999999998875 33 222222111 11 11
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 013010 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN----RVTYNSFIRYYSVVNEIDKAIEM 344 (451)
Q Consensus 269 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~ 344 (451)
.. .+.. ..-.+...|.+.|++++|...|+.+.+. .|+ ...+..+..+|.+.|+.++|.+.
T Consensus 143 ~~------~~~~--------~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 143 KD------RLAK--------YEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp HH------HHHH--------HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HH------HHHH--------HHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 00 0000 1123556788999999999999998876 243 25678888999999999999999
Q ss_pred HHHHHhcC
Q 013010 345 MRKMQNLN 352 (451)
Q Consensus 345 ~~~m~~~~ 352 (451)
++.+...+
T Consensus 207 ~~~l~~~~ 214 (225)
T 2yhc_A 207 AKIIAANS 214 (225)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhhC
Confidence 99888765
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.63 E-value=3.7e-06 Score=73.21 Aligned_cols=190 Identities=11% Similarity=0.067 Sum_probs=111.0
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCH-HHH
Q 013010 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR-P-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV-YTY 244 (451)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~-~~~ 244 (451)
+...+..+...+...|++++|...|+++.+..-. | ....+..+..+|.+.|++++|...|+++.+..-. .+.. .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 3445666777888899999999999998874211 1 1356777888899999999999999998876421 1211 234
Q ss_pred HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H
Q 013010 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR-V 323 (451)
Q Consensus 245 ~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ 323 (451)
..+..++.+.+.. .+. .|..+-..+...|++++|...|+++.+. .|+. .
T Consensus 82 ~~~g~~~~~~~~~----------------~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~ 131 (225)
T 2yhc_A 82 YMRGLTNMALDDS----------------ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQY 131 (225)
T ss_dssp HHHHHHHHHHHC------------------------------------------CCHHHHHHHHHHHHHHTT--CTTCTT
T ss_pred HHHHHHHHhhhhh----------------hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChh
Confidence 4444444433210 000 1111222233455666666666666554 2321 1
Q ss_pred HH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 324 TY-----------------NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 324 t~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
.+ ..+...|.+.|++++|+..|+++.+.....| ....+..+..+|.+.|+.++|.+.++.+.
T Consensus 132 a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 132 TTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 11 2334556677888888888887776542111 12456667777777888888888777776
Q ss_pred hCC
Q 013010 386 DGG 388 (451)
Q Consensus 386 ~~g 388 (451)
..+
T Consensus 212 ~~~ 214 (225)
T 2yhc_A 212 ANS 214 (225)
T ss_dssp HCC
T ss_pred hhC
Confidence 653
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.62 E-value=2.2e-06 Score=77.78 Aligned_cols=161 Identities=15% Similarity=0.016 Sum_probs=76.1
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 212 (451)
..+..+...+.+.|++++|...+++..+.... +...+..+...+...|++++|...+++.... .|+.........
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 34444455555555555555555555554321 3344555555555555555555555555442 233322222111
Q ss_pred -HHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC-CCHhhH
Q 013010 213 -ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PDVVAY 290 (451)
Q Consensus 213 -~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~ 290 (451)
.+...++.++|...|++..... |.+...+..+...|...| ++++|...|.+..+..-. .+...+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g-----------~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVG-----------RNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHhcccccccchHH
Confidence 2334444555555555544443 234455555555555555 555555555555443211 113344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 013010 291 NCLIDGCCKTYRIERALELFDD 312 (451)
Q Consensus 291 ~~li~~~~~~g~~~~a~~~~~~ 312 (451)
..+...+...|+.++|...|++
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHH
Confidence 5555555555555555544443
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.62 E-value=4.2e-07 Score=93.10 Aligned_cols=174 Identities=10% Similarity=-0.064 Sum_probs=137.1
Q ss_pred HhcCCHHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010 180 GEEGLVNEALATFYRMK--------QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (451)
Q Consensus 180 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~ 251 (451)
...|++++|++.|++.. +. -+.+...|..+..+|...|++++|...|++..+.. +-+...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHH
Confidence 67899999999999987 32 23456788888889999999999999999988765 34778889999999
Q ss_pred HhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013010 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY 331 (451)
Q Consensus 252 ~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 331 (451)
...| ++++|...|++..+.. +-+...+..+..++.+.|++++ .+.|++..+.. +-+...|..+-.+
T Consensus 478 ~~~g-----------~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 478 LLTG-----------DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARA 543 (681)
T ss_dssp HHHT-----------CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcC-----------CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHH
Confidence 9999 8899999999888753 2256778888889999999999 99999888763 2267788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC
Q 013010 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373 (451)
Q Consensus 332 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 373 (451)
|.+.|++++|++.|++..+.. +-+...+..+..++...++
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHcCCHHHHHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 999999999999999887754 3345677777777766554
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.62 E-value=9.8e-07 Score=81.01 Aligned_cols=232 Identities=8% Similarity=0.015 Sum_probs=155.1
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 013010 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA 223 (451)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 223 (451)
..|++++|.+++++..+.... + + +...+++++|...|... ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~---~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT---S---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC---C---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc---c---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 357788899988887765311 1 0 11147888888888765 4467788999999
Q ss_pred HHHHHHhhhCCCCC---CCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC-CHhhHHHHHHHHHh
Q 013010 224 RFLLEQMELPGFRC---PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCK 299 (451)
Q Consensus 224 ~~~~~~m~~~g~~~---~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~ 299 (451)
...|.+........ ..-..+|+.+...|.+.|+++.+.. .+++|++++.+. |-.. -..+++.+...|..
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~----~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ----YIEKASVMYVEN---GTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH----HHHHHHHHHHTT---TCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH----HHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHc
Confidence 99888765432100 0124578889999999996665555 444555554322 2111 23567788888888
Q ss_pred cCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHHHH
Q 013010 300 TYRIERALELFDDMNKK----GCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT----SSSYTPIIHALCE 370 (451)
Q Consensus 300 ~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~ 370 (451)
|++++|.+.|++..+. |-.+ ...+++.+...|...|++++|+..|++........++ ...+..+...+..
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~ 207 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH 207 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence 9999999999987643 2111 1467888899999999999999999988764211111 2356666677778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCCchHHH
Q 013010 371 AGRVLEARDFLAELVDGGSVPR------EYTYKLVCDALNAAEEPSLLDD 414 (451)
Q Consensus 371 ~g~~~~A~~l~~~m~~~g~~p~------~~t~~~li~~~~~~g~~~~a~~ 414 (451)
.|++++|...|++.. . .|+ ......++.++ ..|+.+.+.+
T Consensus 208 ~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 208 RADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 899999999999987 3 232 22455566666 5677665555
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.61 E-value=1.6e-06 Score=86.96 Aligned_cols=153 Identities=10% Similarity=-0.107 Sum_probs=87.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 013010 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224 (451)
Q Consensus 145 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 224 (451)
.|++++|.+.+++..+... .+...|..+...|...|++++|.+.|++..+.. +-+...|..+..+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP---QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566777777777665532 245566677777777777777777777776643 234666666777777777777777
Q ss_pred HHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc---C
Q 013010 225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT---Y 301 (451)
Q Consensus 225 ~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g 301 (451)
+.|++..+.. +.+...+..+...|.+.| ++++|.+.|++..+.. +.+...+..+...+... |
T Consensus 78 ~~~~~al~~~---p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 78 VLLQQASDAA---PEHPGIALWLGHALEDAG-----------QAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcC---CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccc
Confidence 7777766654 235666777777777777 6677777777666542 22455666666666666 7
Q ss_pred CHHHHHHHHHHHHhC
Q 013010 302 RIERALELFDDMNKK 316 (451)
Q Consensus 302 ~~~~a~~~~~~m~~~ 316 (451)
+.++|.+.+++..+.
T Consensus 143 ~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQ 157 (568)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc
Confidence 777777777766655
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.61 E-value=4.6e-07 Score=73.60 Aligned_cols=143 Identities=7% Similarity=-0.019 Sum_probs=112.8
Q ss_pred CCchhhhcCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh
Q 013010 103 RDPQKVTLGLNKATEFYHWVERFFDFFHN-EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE 181 (451)
Q Consensus 103 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~ 181 (451)
+..+...+++++|+..|..... ..|+ ...+-.+...|.+.|++++|.+.|++..+.... +..+|..+..+|..
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER---DPKAHRFLGLLYEL 77 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence 4556777889999999998763 3333 445667899999999999999999999988633 67789999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL-LEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
.|++++|...|++..+.. +-+..+|..+...|.+.|++++|.+. +++..+.. |-+..+|......+...|
T Consensus 78 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~---P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF---PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTCC
T ss_pred cCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHhC
Confidence 999999999999998853 23578899999999999999876654 57777654 346777877777776666
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.60 E-value=1.2e-06 Score=79.53 Aligned_cols=161 Identities=9% Similarity=-0.012 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 013010 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP 285 (451)
Q Consensus 206 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 285 (451)
.+..+...+...|++++|...|++..... |-+...+..+...|.+.| ++++|...+++.... .|
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g-----------~~~~A~~~l~~~~~~--~p 182 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLS---NQNGEIGLLLAETLIALN-----------RSEDAEAVLXTIPLQ--DQ 182 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHTT-----------CHHHHHHHHTTSCGG--GC
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CcchhHHHHHHHHHHHCC-----------CHHHHHHHHHhCchh--hc
Confidence 33344444444455555555544444432 123344444444444444 444444444444322 22
Q ss_pred CHhhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010 286 DVVAYNCLI-DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364 (451)
Q Consensus 286 ~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 364 (451)
+........ ..+...++.++|.+.+++..+.. +.+...+..+...|...|++++|...|.++.+......+...+..+
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 222111111 11333344444444444444331 1134444445555555555555555555554443111113344455
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 013010 365 IHALCEAGRVLEARDFLAE 383 (451)
Q Consensus 365 i~~~~~~g~~~~A~~l~~~ 383 (451)
...|...|+.++|...|++
T Consensus 262 ~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 262 QEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHH
Confidence 5555555555554444443
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.60 E-value=2.6e-06 Score=73.27 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHH----------------HHHHHHhcCChHHHHHHHHHhhhCCC
Q 013010 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNV----------------VINALCRVGNFNKARFLLEQMELPGF 235 (451)
Q Consensus 173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~g~ 235 (451)
-.....+...|++++|...|++..+. .|+ ...|.. +..+|.+.|++++|...|++..+..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 33445566788888888888887763 343 333433 4444555555555555555554433
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 013010 236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298 (451)
Q Consensus 236 ~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 298 (451)
|-+...+..+...|...| ++++|...|++..+.. +-+..++..+...|.
T Consensus 85 --p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 85 --PNNVDCLEACAEMQVCRG-----------QEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp --TTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 224445555555555555 4555555555544431 112334444444443
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.58 E-value=8.4e-07 Score=74.06 Aligned_cols=62 Identities=18% Similarity=0.072 Sum_probs=28.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKM 348 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m 348 (451)
...+..+...+...|++++|...|+++.+..-.+ +...+..+...|...|+.++|...|++.
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 3444444444445555555555555444432111 1334444444455555555555444443
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.58 E-value=1.8e-06 Score=79.25 Aligned_cols=229 Identities=9% Similarity=0.004 Sum_probs=152.6
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 188 (451)
.+.+++|.++++...+.. +.+ .+...++++.|...|... ...|...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA-----------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH-----------------HHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHH
Confidence 456889999999887641 111 011257788888777654 3456778999999
Q ss_pred HHHHHHHhhC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCCCCCHHHHHHHHHHHHhcCCchh
Q 013010 189 LATFYRMKQF----RCR-PDVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTILISSYCKYGMQTG 259 (451)
Q Consensus 189 ~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~p~~~~~~~li~~~~~~g~~~~ 259 (451)
...|.+..+. |-. .-..+|+.+...|...|++++|...|++.... |-. .....+++.+...|.. |
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~-~~~a~~~~~lg~~~~~-g---- 129 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP-DTAAMALDRAGKLMEP-L---- 129 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHTT-T----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHc-C----
Confidence 9888877652 111 11457888889999999999999999876432 210 0124577888888887 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 013010 260 CRKAIRRRIWEANHLFRLMLFK----GFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIPN-RVTYNSFI 329 (451)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li 329 (451)
++++|...|++..+. +-.. ...+++.+...|...|++++|.+.|++..+. +..+. ..++..+.
T Consensus 130 -------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 130 -------DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 666777776655432 1111 1467888899999999999999999987653 22222 23666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCh---hhHHHHHHHHHHcCCHHHHHHH
Q 013010 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTS---SSYTPIIHALCEAGRVLEARDF 380 (451)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l 380 (451)
..+...|++++|...|++.. .....++. .....++.++ ..|+.+.+.++
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 77888899999999999988 43211222 1344455555 56777666553
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.58 E-value=1.7e-06 Score=86.67 Aligned_cols=164 Identities=11% Similarity=-0.001 Sum_probs=122.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh
Q 013010 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261 (451)
Q Consensus 182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~ 261 (451)
.|++++|.+.|++..+.. +-+...|..+...|...|++++|.+.|++..+.. +.+..++..+...|...|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g------ 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH---PGHPEAVARLGRVRWTQQ------ 71 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS---TTCHHHHHHHHHHHHHTT------
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCC------
Confidence 478999999999988753 3357889999999999999999999999998875 357889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH
Q 013010 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV---NEI 338 (451)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~ 338 (451)
++++|.+.+++..+.. +-+...+..+..+|.+.|++++|.+.+++..+.. +-+...+..+...|... |+.
T Consensus 72 -----~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~ 144 (568)
T 2vsy_A 72 -----RHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRAL 144 (568)
T ss_dssp -----CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTH
T ss_pred -----CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccH
Confidence 9999999999988753 3356788899999999999999999999988763 23578888999999999 999
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010 339 DKAIEMMRKMQNLNHGVPTSSSYTPI 364 (451)
Q Consensus 339 ~~A~~~~~~m~~~~~~~p~~~~~~~l 364 (451)
++|.+.+++..+.+ +.+...|..+
T Consensus 145 ~~A~~~~~~al~~~--p~~~~~~~~l 168 (568)
T 2vsy_A 145 DVLSAQVRAAVAQG--VGAVEPFAFL 168 (568)
T ss_dssp HHHHHHHHHHHHHT--CCCSCHHHHT
T ss_pred HHHHHHHHHHHhcC--CcccChHHHh
Confidence 99999999999876 3344444443
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.56 E-value=2.5e-06 Score=87.39 Aligned_cols=173 Identities=10% Similarity=-0.079 Sum_probs=138.1
Q ss_pred HccCChhHHHHHHHHHH--------HcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 013010 143 ARGNNVKGLWDFLKDMS--------RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL 214 (451)
Q Consensus 143 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 214 (451)
...|++++|.+.+++.. +.. +.+...+..+...|...|++++|++.|++..+.+ +-+...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF---SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc---ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHH
Confidence 77899999999999988 433 2356678889999999999999999999998753 33678899999999
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 013010 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI 294 (451)
Q Consensus 215 ~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 294 (451)
...|++++|...|++..+.. |-+...|..+..+|.+.| ++++ .+.|++..+.. +-+...|..+.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g-----------~~~~-~~~~~~al~~~-P~~~~a~~~lg 541 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAG-----------NTDE-HKFYQTVWSTN-DGVISAAFGLA 541 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHT-----------CCCT-TCHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcC-----------ChHH-HHHHHHHHHhC-CchHHHHHHHH
Confidence 99999999999999998775 346788999999999999 6667 77777776642 33567888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 013010 295 DGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRYYSVVNE 337 (451)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~ 337 (451)
.++.+.|++++|.+.|++..+. .|+ ...+..+..++...++
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9999999999999999988765 464 5667777777766554
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.56 E-value=6.3e-05 Score=68.43 Aligned_cols=221 Identities=10% Similarity=-0.020 Sum_probs=149.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----Hhc--
Q 013010 146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG--LVNEALATFYRMKQFRCRPDVYAYNVVINAL----CRV-- 217 (451)
Q Consensus 146 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~-- 217 (451)
...++|+++.+.+...+.. ...+|+.--..+...| +++++++.++.+.... +-+..+|+.--..+ ...
T Consensus 47 e~s~~aL~~t~~~L~~nP~---~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGINELAS---HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHCcH---HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 3446788888888877633 4556777777777777 8888888888887753 23556666544444 444
Q ss_pred -CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHH--HHHHHHHHHHhcCCCCCHhhHHHHH
Q 013010 218 -GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW--EANHLFRLMLFKGFVPDVVAYNCLI 294 (451)
Q Consensus 218 -g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~li 294 (451)
+++++++.+++.+.+.. +-+-.+|+--.-.+.+.| .++ ++++.++.+.+.. .-|-..|+--.
T Consensus 123 ~~~~~~EL~~~~~~l~~~---pkny~aW~~R~~vl~~l~-----------~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~ 187 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD---PKNHHVWSYRKWLVDTFD-----------LHNDAKELSFVDKVIDTD-LKNNSAWSHRF 187 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CTTCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhc-----------ccChHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 67888888888887765 347777777777777777 555 7777888877654 23556666655
Q ss_pred HHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC-CCCCChhhHHHHHH
Q 013010 295 DGCCKTYR------IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK-AIEMMRKMQNLN-HGVPTSSSYTPIIH 366 (451)
Q Consensus 295 ~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~~~~~m~~~~-~~~p~~~~~~~li~ 366 (451)
..+...++ ++++++.++.+..... -|...|+.+-..+.+.|+... +.++..+....+ ..+.+...+..+.+
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~ 266 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK 266 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 55555555 7778888877776532 267778777777777776433 445555554432 11356677788888
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 013010 367 ALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 367 ~~~~~g~~~~A~~l~~~m~~ 386 (451)
.|.+.|+.++|.++++.+.+
T Consensus 267 ~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 267 IYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHh
Confidence 88888888888888888775
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.53 E-value=1.5e-06 Score=72.54 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010 306 ALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384 (451)
Q Consensus 306 a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 384 (451)
|...++...+. .| +...+..+...|...|++++|...|+++.+......+...+..+...+...|+.++|...|++.
T Consensus 93 a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 45555555543 23 4566666666677777777777777766665421112445666666666677776666666654
Q ss_pred H
Q 013010 385 V 385 (451)
Q Consensus 385 ~ 385 (451)
+
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.50 E-value=8.8e-05 Score=67.47 Aligned_cols=236 Identities=6% Similarity=-0.056 Sum_probs=176.0
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccC--ChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHH----Hhc---C
Q 013010 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGN--NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL----GEE---G 183 (451)
Q Consensus 113 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~----~~~---g 183 (451)
++|++.++.+... -+-+...|+.--..+...| ++++++++++.+...+.+ +..+|+.--..+ ... +
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk---~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK---NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT---CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc---cHHHHHHHHHHHHHHHHhccccC
Confidence 6899999988854 2224456787778888888 999999999999998744 455676655555 445 7
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh
Q 013010 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN--KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~ 261 (451)
++++++++++.+.+.. +-+-.+|+--...+.+.|.++ ++++.++++.+... -|..+|+--...+.+.+....
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~---~N~sAW~~R~~ll~~l~~~~~-- 198 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL---KNNSAWSHRFFLLFSKKHLAT-- 198 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHSSGGGCC--
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhccccch--
Confidence 8999999999999864 458889988888888889888 99999999998874 488888877666666651000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH
Q 013010 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER-ALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEI 338 (451)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~ 338 (451)
...++++++.++.+.... +-|...|+-+-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.
T Consensus 199 ---~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 199 ---DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp ---HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred ---hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 013889999999888764 4578889888888888887444 555666665433 134778899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010 339 DKAIEMMRKMQNLNHGVPTSSSYTPI 364 (451)
Q Consensus 339 ~~A~~~~~~m~~~~~~~p~~~~~~~l 364 (451)
++|.++++.+.+.-- +.....|+..
T Consensus 275 ~~A~~~~~~l~~~~D-pir~~yW~~~ 299 (306)
T 3dra_A 275 NESRTVYDLLKSKYN-PIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHHHHTTC-GGGHHHHHHH
T ss_pred HHHHHHHHHHHhccC-hHHHHHHHHH
Confidence 999999999986321 3344444433
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.49 E-value=1.2e-05 Score=69.03 Aligned_cols=131 Identities=12% Similarity=-0.069 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 013010 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321 (451)
Q Consensus 242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 321 (451)
..+..+...+...| ++++|...|++. +.|+...+..+...|...|++++|.+.++...+.. +.+
T Consensus 7 ~~~~~~g~~~~~~~-----------~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~ 70 (213)
T 1hh8_A 7 ISLWNEGVLAADKK-----------DWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHL 70 (213)
T ss_dssp HHHHHHHHHHHHTT-----------CHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHhC-----------CHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 44566777788888 889999999866 36688899999999999999999999999988763 336
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP--------------TSSSYTPIIHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 322 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
...+..+...|...|++++|.+.|++..+.....+ ....+..+...|...|++++|.+.|++..+.
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 78899999999999999999999999988542111 2267888889999999999999999999875
Q ss_pred C
Q 013010 388 G 388 (451)
Q Consensus 388 g 388 (451)
.
T Consensus 151 ~ 151 (213)
T 1hh8_A 151 K 151 (213)
T ss_dssp C
T ss_pred C
Confidence 4
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.49 E-value=1.1e-05 Score=73.18 Aligned_cols=164 Identities=9% Similarity=0.007 Sum_probs=108.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC-
Q 013010 210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVY----TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV- 284 (451)
Q Consensus 210 li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~----~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~- 284 (451)
.+..+...|++++|.+++++....... .|+.. .+..+...+...+ ++++|...|++..+....
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~-----------~~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKV-----------DYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHTTSS-----------CHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccC-ChHHHHHHHHHHHHHHHHHccc-----------CHHHHHHHHHHHHHHhccc
Confidence 366778888899999988887764321 23321 2334555666666 778888888887763222
Q ss_pred CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Q 013010 285 PD----VVAYNCLIDGCCKTYRIERALELFDDMNK----K-GCIPN-RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN-- 352 (451)
Q Consensus 285 ~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 352 (451)
++ ..+++.+...|...|++++|...|++..+ . +..+. ..+|..+...|.+.|++++|.+.+++..+..
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 22 23578888888888888888888888763 1 22222 3467777788888888888888887765432
Q ss_pred --CCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 013010 353 --HGVPTSSSYTPIIHALCEAG-RVLEARDFLAELV 385 (451)
Q Consensus 353 --~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~ 385 (451)
....-..+|..+-..|.+.| ++++|.+.+++..
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 10111456777777777888 4678877777654
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.45 E-value=1.6e-05 Score=68.03 Aligned_cols=129 Identities=11% Similarity=-0.094 Sum_probs=105.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (451)
Q Consensus 171 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~ 250 (451)
.+..+...+...|++++|...|++.. .|+...|..+...|...|++++|...|++..... +.+...|..+..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHH
Confidence 45566777888999999999998774 5688899999999999999999999999988764 3577889999999
Q ss_pred HHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC--------------CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF--------------VP-DVVAYNCLIDGCCKTYRIERALELFDDMNK 315 (451)
Q Consensus 251 ~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~--------------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 315 (451)
|...| ++++|...|++..+..- .| ....+..+..+|...|++++|.+.|+...+
T Consensus 81 ~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 81 YYQTE-----------KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHTT-----------CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcc-----------cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999 88899999988876421 11 126677888889999999999999999887
Q ss_pred CC
Q 013010 316 KG 317 (451)
Q Consensus 316 ~g 317 (451)
..
T Consensus 150 ~~ 151 (213)
T 1hh8_A 150 MK 151 (213)
T ss_dssp TC
T ss_pred cC
Confidence 63
No 115
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.44 E-value=2.9e-05 Score=78.63 Aligned_cols=234 Identities=15% Similarity=0.114 Sum_probs=164.4
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHH-HHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHH
Q 013010 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLW-DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191 (451)
Q Consensus 113 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 191 (451)
+++..+|+.+... ++.+...|-..+..+.+.|+.++|. +++++...... .+...|-..+...-+.|++++|.++
T Consensus 326 ~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P---~s~~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 326 ARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP---NSAVLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4456677777754 4456777888888888888888896 99988877542 2555677777888888999999999
Q ss_pred HHHHhhCC---------CCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCCCCHHHHHHHHH
Q 013010 192 FYRMKQFR---------CRPD------------VYAYNVVINALCRVGNFNKARFLLEQMELP-GFRCPPDVYTYTILIS 249 (451)
Q Consensus 192 ~~~m~~~g---------~~p~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~p~~~~~~~li~ 249 (451)
|+.+.+.. -.|+ ..+|...+....+.|+.+.|.++|.+..+. +. +.+...+..+.+.
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE 479 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 99887631 0132 346777888888888999999999998876 32 1233333333333
Q ss_pred HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHH
Q 013010 250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP--NRVTYNS 327 (451)
Q Consensus 250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~ 327 (451)
.+.+. +.+.|.++|+...+. ++-+...+...+......|+.+.|..+|+........+ ....|..
T Consensus 480 --~~~~~----------d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~ 546 (679)
T 4e6h_A 480 --YHISK----------DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQK 546 (679)
T ss_dssp --HTTTS----------CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHH
T ss_pred --HHhCC----------CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 23331 467888888887765 34455666777777778899999999999888764322 3467888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013010 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL 368 (451)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 368 (451)
.+..-.+.|+.+.+..+.+++.+.. |+......+++-|
T Consensus 547 ~~~fE~~~G~~~~~~~v~~R~~~~~---P~~~~~~~f~~ry 584 (679)
T 4e6h_A 547 VIFFESKVGSLNSVRTLEKRFFEKF---PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHS---TTCCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCCcHHHHHHHHh
Confidence 8888888899999999999998864 5555555555444
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.44 E-value=4.2e-05 Score=69.42 Aligned_cols=204 Identities=10% Similarity=0.029 Sum_probs=138.2
Q ss_pred CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCH-
Q 013010 127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDV- 204 (451)
Q Consensus 127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~- 204 (451)
...|+..+...+...+.-.- + .++.. ...........+...+..+...|++++|..++++..+.. ..|+.
T Consensus 41 ~~~~~~~~l~~i~~~l~~~~--~---~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~ 112 (293)
T 3u3w_A 41 AVYPSMDILQGIAAKLQIPI--I---HFYEV---LIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ 112 (293)
T ss_dssp SCCCCHHHHHHHHHHHTCCT--H---HHHHT---TTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHhCcCH--H---HHhCC---CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH
Confidence 34677777777766654221 1 12211 111101112233445778889999999999999988742 12221
Q ss_pred ---HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC----HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHH
Q 013010 205 ---YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD----VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL 277 (451)
Q Consensus 205 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~----~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~ 277 (451)
..+..+...+...|++++|...|++....... .++ ..+|+.+...|...| ++++|...|++
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~~~~~~~~~lg~~y~~~g-----------~~~~A~~~~~~ 180 (293)
T 3u3w_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-GIDVYQNLYIENAIANIYAENG-----------YLKKGIDLFEQ 180 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-CSCTTHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHH
Confidence 23344666677778999999999998874322 133 347999999999999 77777777777
Q ss_pred HHh----c-CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHH
Q 013010 278 MLF----K-GFVPD-VVAYNCLIDGCCKTYRIERALELFDDMNK----KGCIPN-RVTYNSFIRYYSVVN-EIDKAIEMM 345 (451)
Q Consensus 278 m~~----~-~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~g-~~~~A~~~~ 345 (451)
..+ . +..+. ..+|..+...|.+.|++++|.+.+++..+ .+..+. ..+|..+-..|.+.| ..++|.+.+
T Consensus 181 al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 181 ILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 663 1 22222 34788899999999999999999988654 233333 678888999999999 469999999
Q ss_pred HHHHh
Q 013010 346 RKMQN 350 (451)
Q Consensus 346 ~~m~~ 350 (451)
++...
T Consensus 261 ~~Al~ 265 (293)
T 3u3w_A 261 KKASF 265 (293)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 117
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.43 E-value=1.2e-06 Score=71.01 Aligned_cols=110 Identities=12% Similarity=-0.042 Sum_probs=70.5
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 013010 139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (451)
Q Consensus 139 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 218 (451)
...+...|++++|...+....... +.+...+-.+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|...|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 344455667777777776655432 1234455566777777777777777777776643 225667777777777777
Q ss_pred ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 219 ~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
++++|...|++..+.. |-+..+|..+...|.+.|
T Consensus 80 ~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 80 NTDKAVECYRRSVELN---PTQKDLVLKIAELLCKND 113 (150)
T ss_dssp CHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 7777777777776654 235667777777777777
No 118
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.42 E-value=1.1e-05 Score=62.06 Aligned_cols=115 Identities=11% Similarity=0.107 Sum_probs=94.9
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
...+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|..+|+++.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 56788888999999999999999999988752 256678899999999999999999999998753 34688899999
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh
Q 013010 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253 (451)
Q Consensus 212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~ 253 (451)
..|...|++++|...|+++.... +.+...+..+...+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELD---PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHh
Confidence 99999999999999999988765 2455666666555544
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.38 E-value=2e-05 Score=64.29 Aligned_cols=130 Identities=11% Similarity=-0.058 Sum_probs=103.6
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
...+..+...+...|++++|...++...+.... +..++..+...+...|++++|...|++..+.. +.+...|..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 345777888889999999999999999887532 56788899999999999999999999998753 34678899999
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH--HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI--LISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279 (451)
Q Consensus 212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~--li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~ 279 (451)
.++...|++++|...|++..... +.+...+.. +...+.+.| ++++|...+....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVK---PHDKDAKMKYQECNKIVKQK-----------AFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHH-----------HHHHHHHcccchH
Confidence 99999999999999999998765 235555533 333466666 7888888877654
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.36 E-value=2.5e-05 Score=60.00 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=92.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 366 (451)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...|...|++++|..+++++.+.. +.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHH
Confidence 4667788888999999999999999988763 2367888889999999999999999999998875 567788889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010 367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405 (451)
Q Consensus 367 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 405 (451)
.+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 9999999999999999988653 2234455555555443
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.35 E-value=0.00063 Score=62.67 Aligned_cols=231 Identities=10% Similarity=0.022 Sum_probs=160.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-C-ChH
Q 013010 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG-LVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-G-NFN 221 (451)
Q Consensus 145 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~ 221 (451)
.+..++|+++++.+...+.. +..+|+.--..+...| .+++++++++.+.... +-+..+|+.--..+... + +++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~---~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA---HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred CCCCHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 44557899999999998743 5667888777777788 5999999999999865 34788888877777776 6 889
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 013010 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301 (451)
Q Consensus 222 ~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 301 (451)
+++++++.+.+.. +-|..+|+--.-.+.+.|..+.+. ...+.++++.++++.+.. .-|...|+-.-..+.+.+
T Consensus 143 ~EL~~~~k~L~~d---pkNy~AW~~R~wvl~~l~~~~~~~---~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 143 SEIEYIHGSLLPD---PKNYHTWAYLHWLYSHFSTLGRIS---EAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHHHHHTSSC---TTCHHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccccccc---hhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 9999999999876 347788876555555555111000 013448888999888764 347778887777777777
Q ss_pred C-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC--
Q 013010 302 R-------IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI--------------------DKAIEMMRKMQNLN-- 352 (451)
Q Consensus 302 ~-------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~-- 352 (451)
+ ++++++.+++..... +-|...|+.+-..+.+.|+. ....+...++....
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 6 678888888877663 22677887766666666543 33333333333322
Q ss_pred --CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010 353 --HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 353 --~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
...++......|.+.|...|+.++|.++++.+.+.
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 11466777888888888888888899888888644
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.34 E-value=5e-05 Score=68.89 Aligned_cols=170 Identities=11% Similarity=-0.031 Sum_probs=118.3
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc---cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC--H
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV---TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC---RPD--V 204 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~ 204 (451)
..+...+..+...|++++|.+.+....+....... ....+..+...+...|++++|+..|++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677888899999999999888776432110 112344455667788999999999998875321 122 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhh---CCCCCCC--CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010 205 YAYNVVINALCRVGNFNKARFLLEQMEL---PGFRCPP--DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279 (451)
Q Consensus 205 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~p--~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~ 279 (451)
.+|+.+...|...|++++|...|++... .... .+ ...+|..+...|.+.| ++++|...+++..
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~nlg~~y~~~~-----------~y~~Al~~~~kal 223 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDS-----------RYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHhHHHHHHHHh-----------hHHHHHHHHHHHH
Confidence 5888999999999999999999988762 2100 01 2258888999999999 7777777777655
Q ss_pred hc----CCCCC-HhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 013010 280 FK----GFVPD-VVAYNCLIDGCCKTYRIERA-LELFDDMN 314 (451)
Q Consensus 280 ~~----~~~~~-~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 314 (451)
+. +.... ..+|..+..+|.+.|++++| ...++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 32 11111 56677788888888998888 66666544
No 123
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.33 E-value=6.6e-05 Score=76.08 Aligned_cols=219 Identities=8% Similarity=-0.037 Sum_probs=163.2
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHH
Q 013010 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR-FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264 (451)
Q Consensus 186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~ 264 (451)
+.+..+|++.... ++-+...|-.....+...|+.++|. ++|++.... +|.+...|-..+....+.|
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~---~P~s~~Lwl~~a~~ee~~~--------- 392 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC---IPNSAVLAFSLSEQYELNT--------- 392 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhC---------
Confidence 4566778887764 4457888888888888899999996 999998864 4567777888888888999
Q ss_pred HHHHHHHHHHHHHHHhcC---------CCCC------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH
Q 013010 265 RRRIWEANHLFRLMLFKG---------FVPD------------VVAYNCLIDGCCKTYRIERALELFDDMNKK-GCIPNR 322 (451)
Q Consensus 265 ~~~~~~a~~~~~~m~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~ 322 (451)
+++.|.++|+.+.+.. -.|+ ..+|-..+....+.|..+.|..+|....+. +. +..
T Consensus 393 --~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~ 469 (679)
T 4e6h_A 393 --KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTP 469 (679)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCT
T ss_pred --CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CCh
Confidence 6677777777665421 0132 235777777777889999999999999876 21 123
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHH
Q 013010 323 VTYNSFIRYYSVV-NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP--REYTYKLV 399 (451)
Q Consensus 323 ~t~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~l 399 (451)
..|......-.+. ++.+.|..+|+...+.. +-+...+...++.....|+.+.|..+|++.+.....+ ....|...
T Consensus 470 ~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 470 DIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3443333222333 55999999999998874 4456677788888888999999999999998765422 34678999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHh
Q 013010 400 CDALNAAEEPSLLDDGLRKRIRD 422 (451)
Q Consensus 400 i~~~~~~g~~~~a~~~~~~~~~~ 422 (451)
++--.+.|+.+.+..+..++.+.
T Consensus 548 ~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 548 IFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998888853
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.33 E-value=1.1e-05 Score=68.32 Aligned_cols=98 Identities=9% Similarity=-0.058 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMNKK----GCIP--NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT---- 357 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---- 357 (451)
.++..+...+...|++++|.+.+++..+. +-.| ....+..+-..|...|++++|...+++.........+
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 34455555555666666666655554332 1111 1234455555566666666666666655432110111
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 358 SSSYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 358 ~~~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
..++..+...+...|++++|.+.+++..
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1234555556666666666666665544
No 125
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.33 E-value=8.2e-06 Score=69.24 Aligned_cols=159 Identities=8% Similarity=-0.104 Sum_probs=106.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh----CCCCCCCCHHHHHHHHHHHHhcC
Q 013010 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL----PGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 180 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~p~~~~~~~li~~~~~~g 255 (451)
...|++++|.++++.+.. .......+++.+...+...|++++|...+++... .+.. +....++..+...|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH-TAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHcC
Confidence 356778888885544433 1123466777777788888888888888877655 1211 134567888888899999
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhc----CCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 013010 256 MQTGCRKAIRRRIWEANHLFRLMLFK----GFVP--DVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIP-NRVT 324 (451)
Q Consensus 256 ~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t 324 (451)
++++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+. +... -..+
T Consensus 81 -----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 81 -----------NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 666666666655432 2111 2455778888899999999999999887642 2111 1344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010 325 YNSFIRYYSVVNEIDKAIEMMRKMQNL 351 (451)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (451)
+..+-..|...|++++|.+.+++..+.
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 677888899999999999999887653
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.31 E-value=3.9e-05 Score=69.64 Aligned_cols=170 Identities=10% Similarity=0.032 Sum_probs=120.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CCC--
Q 013010 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD-----VYAYNVVINALCRVGNFNKARFLLEQMELPGFRC-PPD-- 240 (451)
Q Consensus 169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~p~-- 240 (451)
...+...+..+...|++++|.+.+.+..+..-..+ ...+..+...+...|++++|...+.+........ .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34566678888999999999999998877432211 1223445566778899999999999887543210 122
Q ss_pred HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc-CCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPD-----VVAYNCLIDGCCKTYRIERALELFDDMN 314 (451)
Q Consensus 241 ~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~-~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 314 (451)
..+|+.+...|...| ++++|...|++..+. ...|+ ..+++.+...|...|++++|.+.+++..
T Consensus 155 ~~~~~~lg~~y~~~~-----------~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 155 LYIENAIANIYAENG-----------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 458899999999999 888888888876621 01122 2578888889999999999999998865
Q ss_pred hC----CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 013010 315 KK----GCIP-NRVTYNSFIRYYSVVNEIDKA-IEMMRKMQ 349 (451)
Q Consensus 315 ~~----g~~p-~~~t~~~li~~~~~~g~~~~A-~~~~~~m~ 349 (451)
+. +... -..+|..+-..|.+.|+.++| ...+++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 43 2111 156777888888888888888 66676654
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.31 E-value=6.3e-06 Score=74.54 Aligned_cols=81 Identities=11% Similarity=-0.153 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (451)
Q Consensus 171 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~ 250 (451)
.+..+...+...|++++|...|++..+.. +-+...|..+..+|.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 34444444455555555555555544421 1134444445555555555555555555544432 2244445555555
Q ss_pred HHhcC
Q 013010 251 YCKYG 255 (451)
Q Consensus 251 ~~~~g 255 (451)
|...|
T Consensus 82 ~~~~g 86 (281)
T 2c2l_A 82 QLEME 86 (281)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 55555
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.31 E-value=2.6e-05 Score=63.52 Aligned_cols=128 Identities=8% Similarity=-0.076 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 013010 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321 (451)
Q Consensus 242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 321 (451)
..+..+...+...| ++++|...|++..+.. +.+..++..+...+...|++++|.+.++...+.. +.+
T Consensus 14 ~~~~~~a~~~~~~~-----------~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~ 80 (166)
T 1a17_A 14 EELKTQANDYFKAK-----------DYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKY 80 (166)
T ss_dssp HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 34555556666666 6666666666665432 2245566666666666777777777776665542 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHH--HHHHHHHHcCCHHHHHHHHHHH
Q 013010 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT--PIIHALCEAGRVLEARDFLAEL 384 (451)
Q Consensus 322 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~m 384 (451)
...+..+...|...|++++|...+++..+.. +.+...+. .....+...|++++|.+.+...
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5566666666666777777777776666654 22333332 2233355566666666666544
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.29 E-value=2.1e-05 Score=61.43 Aligned_cols=108 Identities=11% Similarity=0.027 Sum_probs=89.6
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 212 (451)
..+......|.+.|++++|.+.|++..+... .+...|..+..+|.+.|++++|+..|++..+.+ +.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP---ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 4566788889999999999999999988763 367789999999999999999999999998854 346788999999
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (451)
Q Consensus 213 ~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l 247 (451)
+|...|++++|.+.|++..+.. |-+...+..|
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~---P~~~~a~~~l 121 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD---PSNEEAREGV 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC---cCCHHHHHHH
Confidence 9999999999999999988765 2355555444
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.28 E-value=1.9e-05 Score=61.59 Aligned_cols=121 Identities=9% Similarity=-0.084 Sum_probs=98.7
Q ss_pred CCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 013010 128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207 (451)
Q Consensus 128 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 207 (451)
.+.+...+..+...+.+.|++++|...+++..+... .+...+..+...+...|++++|...|++..+.. +.+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 87 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP---KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGY 87 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT---TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHH
Confidence 344567788899999999999999999999988752 256788999999999999999999999998753 3467889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 208 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
..+..++...|++++|.+.|++..... +.+...+..+...+.+.|
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLD---SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHhc
Confidence 999999999999999999999988764 234566666666666544
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=4.6e-05 Score=59.01 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=99.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365 (451)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 365 (451)
+...+..+...+...|++++|...++...... +.+...+..+...|...|++++|.+.+++..... +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHH
Confidence 45667778888899999999999999987763 2367888889999999999999999999998875 45677888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Q 013010 366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409 (451)
Q Consensus 366 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 409 (451)
..+...|++++|.+.+++..+.. +.+...+..+..++.+.|+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999988753 23567788888888887765
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.26 E-value=2.5e-05 Score=60.58 Aligned_cols=118 Identities=13% Similarity=-0.024 Sum_probs=98.5
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+...+..+...+...|++++|...+++...... .+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP---ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence 456677788889999999999999999988752 256678899999999999999999999998753 3457888899
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
...+...|++++|...|++..... +.+...+..+..++.+.|
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELD---PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHh
Confidence 999999999999999999988765 246777888888887766
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.25 E-value=6.5e-06 Score=74.40 Aligned_cols=194 Identities=11% Similarity=-0.008 Sum_probs=131.8
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+...+..+...+.+.|++++|...++...+... .+...|..+..+|.+.|++++|...+++..+.. +-+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 556788888999999999999999999988753 266789999999999999999999999998853 3467888999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCCH-HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhh
Q 013010 211 INALCRVGNFNKARFLLEQMELPGFRCPPDV-YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA 289 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~-~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 289 (451)
..+|...|++++|...|++..+.. |+. ..+...+....+.. .+. -+..........+...
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~i 139 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLA----KEQRLNFGDDIPSALRIA--------------KKK-RWNSIEERRIHQESEL 139 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH----HHTTCCCCSHHHHHHHHH--------------HHH-HHHHHHHTCCCCCCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----ccchhhHHHHHHHHHHHH--------------HHH-HHHHHHHHHHhhhHHH
Confidence 999999999999999999887643 211 11111122211111 111 1122233333444444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 013010 290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT-YNSFIRYYSVV-NEIDKAIEMMRKMQNL 351 (451)
Q Consensus 290 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~-g~~~~A~~~~~~m~~~ 351 (451)
...+ ..+ ..|+.++|.+.++...+. .|+... ...+-..+.+. +.+++|.++|.+..+.
T Consensus 140 ~~~l-~~l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 140 HSYL-TRL-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHH-HHH-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHH-HHH-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3333 333 368889999888877765 455433 33343334444 6788999999887653
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.25 E-value=4.4e-05 Score=68.04 Aligned_cols=197 Identities=5% Similarity=-0.116 Sum_probs=127.5
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHH-------HHHHHccCChhHHHHHHHHHHHcC---CCCCcc----------
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEM-------GIVFARGNNVKGLWDFLKDMSRRG---NGELVT---------- 168 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~---------- 168 (451)
.++...|.+.|..+.+. -+-....|..+ ...+.+.++..++...+..-.... .....+
T Consensus 19 ~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 56789999999999864 22234566666 455555555555555554443311 000011
Q ss_pred -----HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC--H
Q 013010 169 -----TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD--V 241 (451)
Q Consensus 169 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~--~ 241 (451)
...+-.+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...... .|. .
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---d~~~~~ 171 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP---DKFLAG 171 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS---CHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC---CcccHH
Confidence 1233445667778899999999998887643 544355555667888999999999998554432 121 2
Q ss_pred HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 013010 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD--VVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319 (451)
Q Consensus 242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 319 (451)
..+..+-.++.+.| ++++|+..|++.......|. .........++.+.|+.++|..+|+++... .
T Consensus 172 ~a~~~LG~al~~LG-----------~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~ 238 (282)
T 4f3v_A 172 AAGVAHGVAAANLA-----------LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--H 238 (282)
T ss_dssp HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHHHCC-----------CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 36777888888888 88888888888875433243 234555666777888999999999888876 3
Q ss_pred CCHHHH
Q 013010 320 PNRVTY 325 (451)
Q Consensus 320 p~~~t~ 325 (451)
|+...+
T Consensus 239 P~~~~~ 244 (282)
T 4f3v_A 239 PEPKVA 244 (282)
T ss_dssp CCHHHH
T ss_pred CcHHHH
Confidence 553333
No 135
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.25 E-value=0.00098 Score=65.15 Aligned_cols=280 Identities=9% Similarity=-0.041 Sum_probs=158.6
Q ss_pred cCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCC-hhHHHHHHHHHHHc-CCCCCccHHhHHHHHHHHH----hcC
Q 013010 110 LGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNN-VKGLWDFLKDMSRR-GNGELVTTSSVTCLIKVLG----EEG 183 (451)
Q Consensus 110 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~-~~~~~~~~~~~~~li~~~~----~~g 183 (451)
+..+.|..+|+.... ..|+...|...+....+.+. .+.+..+|+..... |.. ..+...|...+..+. ..|
T Consensus 28 ~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d-~~s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY-WDSYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC-TTCHHHHHHHHHHTSSCSSHHH
T ss_pred CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC-cccHHHHHHHHHHHHhchhhhH
Confidence 457899999999885 35699999988888777663 46677788877664 322 235567887777654 346
Q ss_pred CHHHHHHHHHHHhhCCCCCC--HHHHHHHHH--------------------------------------------HHHh-
Q 013010 184 LVNEALATFYRMKQFRCRPD--VYAYNVVIN--------------------------------------------ALCR- 216 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~--~~~~~~li~--------------------------------------------~~~~- 216 (451)
+++.+.++|++.... ++. ...|..... .|+.
T Consensus 104 ~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~ 181 (493)
T 2uy1_A 104 RIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDL 181 (493)
T ss_dssp HHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 788899999988873 221 111111110 0110
Q ss_pred -cCC---------hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 013010 217 -VGN---------FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286 (451)
Q Consensus 217 -~g~---------~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 286 (451)
.++ .+.+..+|++..... +-+...|...+.-+.+.| +.+.|..++++.... +.+
T Consensus 182 E~~~~~~~~~~~~~~Rv~~~ye~al~~~---p~~~~lW~~ya~~~~~~~-----------~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 182 EMENGMKLGGRPHESRMHFIHNYILDSF---YYAEEVYFFYSEYLIGIG-----------QKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH--CCS
T ss_pred HhcCCccCcchhhHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhC--CCc
Confidence 011 123445666655532 345666777777777777 555666666655544 111
Q ss_pred H----------------------------------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010 287 V----------------------------------------VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326 (451)
Q Consensus 287 ~----------------------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 326 (451)
. ..|-..+....+.+..+.|..+|+.. ... ..+...|.
T Consensus 246 ~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i 323 (493)
T 2uy1_A 246 MFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFI 323 (493)
T ss_dssp SHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHH
Confidence 1 12222233333455677777777776 221 12333333
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010 327 SFIRYYSV-VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA 405 (451)
Q Consensus 327 ~li~~~~~-~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 405 (451)
.....-.. .++.+.|..+|+...+... -+...+...++-..+.|+.+.|..+|+... -....|...++-=..
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 22111111 2357777777777766532 123344555665666777777777777752 245666666666666
Q ss_pred cCCCchHHHHHHHHH
Q 013010 406 AEEPSLLDDGLRKRI 420 (451)
Q Consensus 406 ~g~~~~a~~~~~~~~ 420 (451)
.|+.+.+..++++.+
T Consensus 397 ~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 397 VGSMELFRELVDQKM 411 (493)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 777776766666665
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.25 E-value=6.1e-05 Score=67.16 Aligned_cols=188 Identities=9% Similarity=-0.075 Sum_probs=124.7
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCccHHhHHHH-------HHHHHhcCCHHHHHHHHHHHhhCCCCCC-------------
Q 013010 144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCL-------IKVLGEEGLVNEALATFYRMKQFRCRPD------------- 203 (451)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~------------- 203 (451)
..++...|.+.|.+....... ....|.-+ ...+...++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~---~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES---ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhChh---hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccc
Confidence 578999999999999988633 45567766 3444444444555544444433 2221
Q ss_pred ---------HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHH
Q 013010 204 ---------VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274 (451)
Q Consensus 204 ---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~ 274 (451)
...+-.....+...|++++|.++|+.+...+ |+......+...+.+.+ ++++|+..
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~----p~~~~~~~~a~l~~~~~-----------r~~dA~~~ 157 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG----SEHLVAWMKAVVYGAAE-----------RWTDVIDQ 157 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT----CHHHHHHHHHHHHHHTT-----------CHHHHHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHcC-----------CHHHHHHH
Confidence 1233445667788899999999998887755 54445566666777887 88888888
Q ss_pred HHHHHhcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 275 FRLMLFKGFVPD--VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN--RVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 275 ~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
|+...... .|. ...+..+-.++...|++++|+..|++.......|. .......-.++.+.|+.++|..+|+++..
T Consensus 158 l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 158 VKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 87443321 111 23566677788888888888888888775443253 23455566677788888888888888887
Q ss_pred cC
Q 013010 351 LN 352 (451)
Q Consensus 351 ~~ 352 (451)
..
T Consensus 237 ~~ 238 (282)
T 4f3v_A 237 TH 238 (282)
T ss_dssp HS
T ss_pred cC
Confidence 64
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.22 E-value=1.5e-05 Score=64.60 Aligned_cols=99 Identities=13% Similarity=0.001 Sum_probs=61.2
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (451)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l 247 (451)
+...+..+...+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|...|++..... |.+...|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHHHHHH
Confidence 34455566666666666666666666666532 2245666666666666666666666666666554 2345566666
Q ss_pred HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281 (451)
Q Consensus 248 i~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~ 281 (451)
..+|.+.| ++++|...|+...+.
T Consensus 111 g~~~~~lg-----------~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLK-----------APLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHcC-----------CHHHHHHHHHHHHHh
Confidence 66666666 666666666666554
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.22 E-value=1.9e-05 Score=65.62 Aligned_cols=123 Identities=9% Similarity=-0.028 Sum_probs=78.6
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHH-HHhcCC
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV-LGEEGL 184 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~-~~~~g~ 184 (451)
+...+++++|+..|+..... .+.+...+..+...|...|++++|...++...+.... +...+..+..+ +...|+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---NAELYAALATVLYYQASQ 94 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhcCC
Confidence 44556677777777776653 2345666777777777777777777777777665422 44556666666 666777
Q ss_pred H--HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010 185 V--NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 185 ~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
+ ++|...|++..+.. +-+...+..+...|...|++++|...|++.....
T Consensus 95 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 6 77777777776643 2245666667777777777777777777776654
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.20 E-value=5e-05 Score=59.12 Aligned_cols=100 Identities=13% Similarity=-0.019 Sum_probs=64.2
Q ss_pred ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 013010 167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI 246 (451)
Q Consensus 167 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~ 246 (451)
.+...|..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++..... +.+...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~ 89 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PTFIKGYTR 89 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCchHHHHH
Confidence 345566666677777777777777777766542 2255666666666667777777777777666543 235566666
Q ss_pred HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281 (451)
Q Consensus 247 li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~ 281 (451)
+..+|.+.| ++++|...|++..+.
T Consensus 90 la~~~~~~~-----------~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 90 KAAALEAMK-----------DYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-----------hHHHHHHHHHHHHHh
Confidence 666676666 666666666666543
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.20 E-value=1.3e-05 Score=64.87 Aligned_cols=100 Identities=9% Similarity=-0.059 Sum_probs=87.8
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+...+..+...+.+.|++++|...|+....... .+...|..+..+|...|++++|+..|++..+.. +-+...|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P---~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF---YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 345677888899999999999999999999863 367789999999999999999999999998854 3357889999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC
Q 013010 211 INALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
..+|...|++++|...|++..+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998865
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.18 E-value=1.8e-05 Score=65.71 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=82.2
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCh-
Q 013010 143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA-LCRVGNF- 220 (451)
Q Consensus 143 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~- 220 (451)
...|++++|...++...+... .+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP---QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 346778888888888777652 255678888888888888888888888887643 2356677777777 6678887
Q ss_pred -HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH
Q 013010 221 -NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR 265 (451)
Q Consensus 221 -~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~ 265 (451)
++|...|++..... |.+...+..+...|...|+++.+...+.
T Consensus 97 ~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~ 139 (177)
T 2e2e_A 97 TAQTRAMIDKALALD---SNEITALMLLASDAFMQANYAQAIELWQ 139 (177)
T ss_dssp CHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 88888888887764 2456777788888888888877777654
No 142
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.18 E-value=5.8e-05 Score=58.92 Aligned_cols=100 Identities=12% Similarity=0.096 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 367 (451)
..+...-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHH
Confidence 456667788899999999999999987763 2368888889999999999999999999998876 5677889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC
Q 013010 368 LCEAGRVLEARDFLAELVDGGSVPR 392 (451)
Q Consensus 368 ~~~~g~~~~A~~l~~~m~~~g~~p~ 392 (451)
|...|++++|.+.|++.++. .|+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l--~P~ 113 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV--DPS 113 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHCCCHHHHHHHHHHHHHH--CcC
Confidence 99999999999999998874 454
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.15 E-value=0.00097 Score=61.39 Aligned_cols=226 Identities=8% Similarity=-0.061 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc-C-CHHHH
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGN-NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE-G-LVNEA 188 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A 188 (451)
-++|+++++.+... -+-+...|+.--..+...| .+++++++++.+...+.+ +..+|+.--..+... + +++++
T Consensus 70 se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK---ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 70 SERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK---SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhcCCChHHH
Confidence 36899999988864 2334556777777777778 599999999999998744 677888877777776 7 88999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhh
Q 013010 189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFN--------KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260 (451)
Q Consensus 189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~ 260 (451)
+++++.+.+.. +-|..+|+--...+.+.|.++ ++++.++++.+... -|..+|+-....+.+.+.....
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp---~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG---RNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhccccccc
Confidence 99999999865 447888887666666666666 89999999998764 4888998888887777632111
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC---
Q 013010 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI--------------------ERALELFDDMNKKG--- 317 (451)
Q Consensus 261 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~g--- 317 (451)
. ..++++++.+++..... +-|...|+-+-..+.+.|+. ....+...++...+
T Consensus 221 ~----~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 221 S----RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp H----HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred h----HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 1 14788889988887653 44677888777777766653 23333333333322
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010 318 --CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351 (451)
Q Consensus 318 --~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (451)
-.++......|...|...|+.++|.++++.+.+.
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1357888899999999999999999999999754
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.13 E-value=7.1e-05 Score=69.43 Aligned_cols=132 Identities=14% Similarity=0.015 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC--------------HhhHHHHHHHHHhcCCHHH
Q 013010 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD--------------VVAYNCLIDGCCKTYRIER 305 (451)
Q Consensus 240 ~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~ 305 (451)
+...+..+...|.+.| ++++|...|++..+..-... ...|..+..+|.+.|++++
T Consensus 146 ~a~~~~~~g~~~~~~g-----------~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEG-----------KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp HHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5677888899999999 89999999998886531111 4788888888999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHH-HHHHHHH
Q 013010 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA-RDFLAEL 384 (451)
Q Consensus 306 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~l~~~m 384 (451)
|...++...+.. +.+...|..+-.+|...|++++|...|++..+.. +-+...+..+...+.+.|+.++| ..++..|
T Consensus 215 A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 215 AIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888763 2367888888889999999999999999988875 45677888888888888888888 4466666
Q ss_pred H
Q 013010 385 V 385 (451)
Q Consensus 385 ~ 385 (451)
.
T Consensus 292 ~ 292 (336)
T 1p5q_A 292 F 292 (336)
T ss_dssp H
T ss_pred H
Confidence 4
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.11 E-value=0.00013 Score=55.27 Aligned_cols=109 Identities=12% Similarity=-0.017 Sum_probs=88.6
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
...+..+...+...|++++|...++........ +...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 456777888889999999999999999887532 56678889999999999999999999998753 33678888999
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010 212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (451)
Q Consensus 212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l 247 (451)
.++...|++++|.+.|++..+.. +.+...+..+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l 112 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE---ANNPQLKEGL 112 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC---CCCHHHHHHH
Confidence 99999999999999999988765 2344444443
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.10 E-value=7.3e-05 Score=69.35 Aligned_cols=120 Identities=12% Similarity=-0.086 Sum_probs=58.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 013010 170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD----------------VYAYNVVINALCRVGNFNKARFLLEQMELP 233 (451)
Q Consensus 170 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 233 (451)
..|..+...|.+.|++++|...|++..+.. |+ ..+|..+..+|.+.|++++|...|++....
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344455555555555555555555554422 22 244555555555555555555555555444
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 013010 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306 (451)
Q Consensus 234 g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 306 (451)
. |.+..+|..+..+|...| ++++|...|++..+.. +-+...+..+..++.+.|+.++|
T Consensus 226 ~---p~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D---SNNEKGLSRRGEAHLAVN-----------DFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C---CCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 234455555555555555 5555555555544431 12334444444445555555444
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.06 E-value=3e-05 Score=62.54 Aligned_cols=100 Identities=7% Similarity=-0.076 Sum_probs=86.0
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+...+..+...+.+.|++++|...|+....... .+...|..+..+|...|++++|...|++..... +-+...|..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH---YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 455677788899999999999999999988763 267788999999999999999999999998753 3367888889
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC
Q 013010 211 INALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
..+|...|++++|...|+...+..
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999987654
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.06 E-value=6.6e-05 Score=56.35 Aligned_cols=100 Identities=13% Similarity=0.039 Sum_probs=85.4
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP--DVYAYN 208 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~ 208 (451)
+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...|++..+.. +. +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 4556777888999999999999999999887532 56678889999999999999999999998853 23 578889
Q ss_pred HHHHHHHhc-CChHHHHHHHHHhhhCC
Q 013010 209 VVINALCRV-GNFNKARFLLEQMELPG 234 (451)
Q Consensus 209 ~li~~~~~~-g~~~~a~~~~~~m~~~g 234 (451)
.+..++... |++++|.+.+++.....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999999 99999999999998765
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.05 E-value=3.5e-05 Score=62.08 Aligned_cols=99 Identities=12% Similarity=-0.021 Sum_probs=85.9
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010 168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247 (451)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l 247 (451)
+...+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...|++..... |.+...+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD---IXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHHHH
Confidence 56677888899999999999999999998753 3478889999999999999999999999998765 3467888999
Q ss_pred HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010 248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281 (451)
Q Consensus 248 i~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~ 281 (451)
..+|...| ++++|...|+...+.
T Consensus 96 g~~~~~~g-----------~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXG-----------ELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence 99999999 899999999988764
No 150
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.02 E-value=8.7e-05 Score=57.41 Aligned_cols=114 Identities=14% Similarity=0.117 Sum_probs=87.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCC----hhhH
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPT----SSSY 361 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~----~~~~ 361 (451)
...+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++....... .++ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456777788889999999999999887763 336778888888999999999999999988775421 122 6678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013010 362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403 (451)
Q Consensus 362 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 403 (451)
..+...+...|++++|.+.|++..+.. |+......+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 888888999999999999999888743 5655555554443
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00019 Score=55.55 Aligned_cols=97 Identities=11% Similarity=0.003 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 367 (451)
..+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..+++..+.. +.+...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 456667777888899999999998887753 2367888888888889999999999999888876 4567788888888
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 013010 368 LCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 368 ~~~~g~~~~A~~l~~~m~~~ 387 (451)
+...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88899999999888887753
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00011 Score=56.94 Aligned_cols=98 Identities=14% Similarity=0.041 Sum_probs=82.9
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
...+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|+..|++..+.. +-+...|..+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 456777888889999999999999999887632 56789999999999999999999999998853 33578888899
Q ss_pred HHHHhcCChHHHHHHHHHhhhC
Q 013010 212 NALCRVGNFNKARFLLEQMELP 233 (451)
Q Consensus 212 ~~~~~~g~~~~a~~~~~~m~~~ 233 (451)
.++...|++++|...|++....
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.0002 Score=68.56 Aligned_cols=167 Identities=10% Similarity=-0.049 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh--
Q 013010 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY----TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF-- 280 (451)
Q Consensus 207 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~----~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~-- 280 (451)
+..+...|...|++++|.+++..+...--.+ ++.. +.+.+-..+...| .++.|..++.....
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~ 125 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQF-AKSKTVKVLKTLIEKFEQVPD-----------SLDDQIFVCEKSIEFA 125 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-CHHHHHHHHHHHHHHHCSCCS-----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHHH
Confidence 5667777888888888888877765421110 1211 1222222223334 56666666665432
Q ss_pred --cCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 281 --KGFVPD-VVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 281 --~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
.+..+. ..++..+...|...|++++|..++++.... +-.+ ...++..++..|...|++++|..++++.....
T Consensus 126 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 126 KREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 222222 456777888888999999999988876542 1122 24677888888999999999999988766432
Q ss_pred CCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 353 HGVPT-----SSSYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 353 ~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
...++ ...+..+...+...|++++|...|.+..
T Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 206 NSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11121 2345556666677788888888776664
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.02 E-value=0.00036 Score=52.63 Aligned_cols=99 Identities=21% Similarity=0.120 Sum_probs=82.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 366 (451)
...+..+...+...|++++|...++...... +.+...+..+...|...|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 4566777888889999999999999987753 2367888888889999999999999999988875 456778888889
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC
Q 013010 367 ALCEAGRVLEARDFLAELVDGG 388 (451)
Q Consensus 367 ~~~~~g~~~~A~~l~~~m~~~g 388 (451)
.+...|++++|.+.+++..+.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999888653
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.01 E-value=8.5e-05 Score=58.01 Aligned_cols=106 Identities=12% Similarity=0.000 Sum_probs=83.5
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCC----HHH
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPD----VYA 206 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~ 206 (451)
..+..+...+.+.|++++|...|++..+... .+...|+.+..+|...|++++|++.|++..+.+ ..++ ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p---~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP---SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 4567788899999999999999999988753 266789999999999999999999999887632 1111 246
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHH
Q 013010 207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT 245 (451)
Q Consensus 207 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~ 245 (451)
|..+..++...|++++|.+.|++..... ||..+..
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~----~~~~~~~ 120 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEF----RDPELVK 120 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC----cCHHHHH
Confidence 7778888899999999999999877643 6655443
No 156
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.00 E-value=5.7e-05 Score=73.52 Aligned_cols=129 Identities=9% Similarity=-0.040 Sum_probs=99.0
Q ss_pred HHHccCChhHHHHHHHHHHHc-----CCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCC-CHHHHH
Q 013010 141 VFARGNNVKGLWDFLKDMSRR-----GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF-----R-CRP-DVYAYN 208 (451)
Q Consensus 141 ~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~~ 208 (451)
.+...|++++|..++++..+. |...+....+++.|...|...|++++|..++++..+. | -.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887654 3233345788999999999999999999999887652 2 122 357789
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010 209 VVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280 (451)
Q Consensus 209 ~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~ 280 (451)
.|...|...|++++|+.++++... .|-.+|-...+.+.+-.++...+ .+++|+.+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~-----------~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR-----------MFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 999999999999999999988743 45443334455666667777777 88999999988875
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.00 E-value=1.5e-05 Score=67.60 Aligned_cols=97 Identities=11% Similarity=-0.029 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 367 (451)
..+..+..+|...|++++|...++...+.. +.+...+..+-.+|...|++++|...|++..+.. +-+...+..+...
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 566667777888888888888888877652 2356777778888888888888888888877765 3455666666666
Q ss_pred HHHcCCHHHHH-HHHHHHHhC
Q 013010 368 LCEAGRVLEAR-DFLAELVDG 387 (451)
Q Consensus 368 ~~~~g~~~~A~-~l~~~m~~~ 387 (451)
+...++.+++. ..+..|...
T Consensus 166 ~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 66666666655 445555433
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.99 E-value=0.00012 Score=56.69 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=90.1
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC----HH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC--RPD----VY 205 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~ 205 (451)
...+..+...+...|++++|...++....... .+...+..+...+...|++++|...|++..+... .++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP---TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 35677788889999999999999999988752 2566788899999999999999999999877431 122 77
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (451)
Q Consensus 206 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~ 251 (451)
+|..+..++...|++++|.+.|++..+.. |+......+....
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~ 122 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH----RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCHHHHHHHHHHH
Confidence 88888999999999999999999988764 6665555554443
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.98 E-value=9.7e-05 Score=55.37 Aligned_cols=100 Identities=11% Similarity=-0.007 Sum_probs=75.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--ChhhHHH
Q 013010 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP--TSSSYTP 363 (451)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~ 363 (451)
+...+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++..+.. +. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHH
Confidence 34556667777888888888888888877653 2356777778888888888888888888887765 33 5677788
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhCC
Q 013010 364 IIHALCEA-GRVLEARDFLAELVDGG 388 (451)
Q Consensus 364 li~~~~~~-g~~~~A~~l~~~m~~~g 388 (451)
+...+... |++++|.+.+.+..+..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888888 88888888888877653
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.98 E-value=0.00016 Score=59.12 Aligned_cols=100 Identities=9% Similarity=-0.047 Sum_probs=87.1
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 210 (451)
+...+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|+..|++..+.. +-+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4567888889999999999999999999987632 67789999999999999999999999998854 3358889999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC
Q 013010 211 INALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
..+|...|++++|...|++..+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999987764
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.96 E-value=0.00018 Score=56.40 Aligned_cols=101 Identities=14% Similarity=-0.033 Sum_probs=87.2
Q ss_pred CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 013010 129 FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208 (451)
Q Consensus 129 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 208 (451)
+.+...+..+...+...|++++|...|......... +...|..+..++...|++++|...|++..+.. +.+...|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 81 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 81 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHH
Confidence 346778888999999999999999999999887632 56789999999999999999999999998854 33678899
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhC
Q 013010 209 VVINALCRVGNFNKARFLLEQMELP 233 (451)
Q Consensus 209 ~li~~~~~~g~~~~a~~~~~~m~~~ 233 (451)
.+..+|...|++++|...|++....
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.95 E-value=8.7e-05 Score=59.12 Aligned_cols=99 Identities=8% Similarity=-0.026 Sum_probs=84.2
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
...+..+...+.+.|++++|...|+.....+. .+...|..+..+|...|++++|...|+...+.. +-+...|..+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH---YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 44566677888999999999999999998763 266788899999999999999999999998854 34677888889
Q ss_pred HHHHhcCChHHHHHHHHHhhhCC
Q 013010 212 NALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 212 ~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
.+|...|++++|.+.|+......
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987654
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=0.00044 Score=54.77 Aligned_cols=98 Identities=16% Similarity=-0.044 Sum_probs=83.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhH
Q 013010 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN----RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361 (451)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 361 (451)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...|...|++++|...+++..+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHH
Confidence 5667788888889999999999999998876 465 6778888888999999999999999988865 4567788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010 362 TPIIHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 362 ~~li~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
..+..+|...|++++|.+.|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888999999999999999988864
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.95 E-value=0.00027 Score=55.43 Aligned_cols=99 Identities=12% Similarity=0.018 Sum_probs=81.2
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI 364 (451)
Q Consensus 285 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 364 (451)
.+...+..+...+...|++++|...|+...+.. +.+...|..+...|...|++++|...+++..+.. +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence 356777888888889999999999999877763 2357788888888889999999999999888876 4567788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 013010 365 IHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 365 i~~~~~~g~~~~A~~l~~~m~~ 386 (451)
...|...|++++|...|.+..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8889999999999998888774
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=0.0002 Score=56.86 Aligned_cols=116 Identities=11% Similarity=-0.047 Sum_probs=91.1
Q ss_pred CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 013010 129 FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208 (451)
Q Consensus 129 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 208 (451)
+.+...+..+...+...|++++|...|++..+...........|..+..+|...|++++|...+++..+.. +.+...|.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34567788889999999999999999999988753211116778889999999999999999999988753 33678888
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (451)
Q Consensus 209 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li 248 (451)
.+..+|...|++++|...|++..... +.+...+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~ 140 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE---PKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC---SSCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHH
Confidence 89999999999999999999988764 23444444433
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.94 E-value=0.00019 Score=57.11 Aligned_cols=97 Identities=6% Similarity=-0.077 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA 367 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 367 (451)
..+..+...+.+.|++++|...|+...... +.+...|..+-.+|...|++++|...|++..... +.+...+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHH
Confidence 445556677788899999999998887653 2267778888888888999999999999888876 4566777788888
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 013010 368 LCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 368 ~~~~g~~~~A~~l~~~m~~~ 387 (451)
|...|++++|.+.|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88999999999988887753
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.91 E-value=0.00022 Score=60.32 Aligned_cols=119 Identities=14% Similarity=-0.007 Sum_probs=95.7
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC--cc-----------HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL--VT-----------TSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 199 (451)
..+..+...+.+.|++++|...|++..+...... .. ...|..+..+|...|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4566678888899999999999999988642211 00 2678889999999999999999999998853
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 200 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
+.+...|..+..+|...|++++|...|++..... |-+..++..+..++...+
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---PNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999988764 346777777777777766
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.90 E-value=0.0005 Score=56.06 Aligned_cols=99 Identities=11% Similarity=0.089 Sum_probs=85.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010 286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365 (451)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 365 (451)
+...+..+...+...|++++|.+.|++..+.. +-+...|..+-.+|...|++++|+..|++..+.. +-+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 45567778888999999999999999988763 2268888999999999999999999999999876 55688899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 013010 366 HALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 366 ~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
.+|...|++++|.+.|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999988864
No 169
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.89 E-value=7.4e-05 Score=72.75 Aligned_cols=134 Identities=8% Similarity=-0.066 Sum_probs=94.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhC---CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCCCHHHHH
Q 013010 178 VLGEEGLVNEALATFYRMKQF---RCRP----DVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYTYT 245 (451)
Q Consensus 178 ~~~~~g~~~~A~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~p~~~~~~ 245 (451)
.+...|++++|+.++++..+. -+.| ...+++.|..+|...|++++|+.++++... .|-.+|-...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999887652 1122 357799999999999999999999988743 3544444567899
Q ss_pred HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK 315 (451)
Q Consensus 246 ~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 315 (451)
.|...|...|+++.|.. -+++|++++........+-...+.+.+-.++...+.+++|+.+|..+++
T Consensus 398 nLa~~~~~~G~~~eA~~----~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHG----MICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHH----HHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH----HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999994444443 3344444444433322222334556666777788888999999988875
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.88 E-value=0.00035 Score=54.11 Aligned_cols=98 Identities=10% Similarity=-0.037 Sum_probs=77.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHH
Q 013010 135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD----VYAYNVV 210 (451)
Q Consensus 135 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l 210 (451)
+..+...+.+.|++++|...|+...+...........+..+..++...|++++|...|++..+.. |+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence 33466677889999999999999888754322223567788888999999999999999988743 33 5667888
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC
Q 013010 211 INALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
..++...|++++|...|+++....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 888999999999999999988764
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00091 Score=63.92 Aligned_cols=199 Identities=7% Similarity=-0.096 Sum_probs=121.9
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCc--------------cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCH
Q 013010 140 IVFARGNNVKGLWDFLKDMSRRGNGELV--------------TTSSVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDV 204 (451)
Q Consensus 140 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 204 (451)
..+.+.|++++|.+.+..+.+....... ....+..+...|.+.|++++|.+.+..+...- -.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3345667888888888777765322110 01236677888888888888888887775521 11111
Q ss_pred ----HHHHHHHHHHHhcCChHHHHHHHHHhhh----CCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHH
Q 013010 205 ----YAYNVVINALCRVGNFNKARFLLEQMEL----PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR 276 (451)
Q Consensus 205 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~ 276 (451)
.+.+.+-..+...|+.+.|..++.+... .+.. ..-..++..+...|...| ++++|..+++
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g-----------~~~~A~~~l~ 159 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV-FLKHSLSIKLATLHYQKK-----------QYKDSLALIN 159 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC-SSHHHHHHHHHHHHHHHT-----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHHcc-----------ChHHHHHHHH
Confidence 1222222333445778888887766543 2221 123456777888888888 7777777777
Q ss_pred HHHhc--CC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 013010 277 LMLFK--GF--VP-DVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIPN--RVTYNSFIRYYSVVNEIDKAIEMM 345 (451)
Q Consensus 277 ~m~~~--~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~t~~~li~~~~~~g~~~~A~~~~ 345 (451)
+.... +. .+ ...++..++..|...|++++|..+++..... +..|. ...+..+...+...|++++|...|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 66532 11 11 2356777888888888888888888776532 22221 345566666677788888888777
Q ss_pred HHHHh
Q 013010 346 RKMQN 350 (451)
Q Consensus 346 ~~m~~ 350 (451)
.+..+
T Consensus 240 ~~a~~ 244 (434)
T 4b4t_Q 240 FESFE 244 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.86 E-value=0.00031 Score=54.73 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC-
Q 013010 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG- 282 (451)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~- 282 (451)
..++..+...+.+.|++++|+..|++..+.. |-+...|+.+..+|.+.| ++++|.+.+++..+..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~-----------~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEK-----------KFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhh-----------hHHHHHHHHHHHHHhCc
Confidence 3456667777777888888888887777654 346677777888888888 6777777776665421
Q ss_pred -CCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010 283 -FVPD----VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN 326 (451)
Q Consensus 283 -~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 326 (451)
..++ ..+|..+-.++...|++++|.+.|++..+. .||..+..
T Consensus 74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 0111 134555666777778888888888776654 35554443
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.83 E-value=0.014 Score=53.40 Aligned_cols=193 Identities=9% Similarity=-0.015 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHccCC----------hhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh
Q 013010 113 NKATEFYHWVERFFDFFHN-EMTCKEMGIVFARGNN----------VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE 181 (451)
Q Consensus 113 ~~A~~~f~~~~~~~~~~~~-~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~ 181 (451)
++|++.++.+.. ..|+ ...|+.=-..+...+. ++++..+++.+...+.+ +..+|+.-...+..
T Consensus 47 ~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK---ny~aW~hR~wlL~~ 120 (331)
T 3dss_A 47 ESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGTWHHRCWLLSR 120 (331)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHhc
Confidence 689999999884 3444 3445544333333332 68899999999988644 67788888878888
Q ss_pred cC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCch
Q 013010 182 EG--LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258 (451)
Q Consensus 182 ~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~ 258 (451)
.| .+++++++++.+.+.. +-|-.+|+--.-.+...|. ++++++.++++.+... -|..+|+.....+.+.+...
T Consensus 121 l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p---~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 121 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---SNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHHSCCC
T ss_pred cCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHhhhcc
Confidence 77 4899999999999865 4588888888877888888 5899999999998764 58888887777666653211
Q ss_pred hh---hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhC
Q 013010 259 GC---RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT-----------YRIERALELFDDMNKK 316 (451)
Q Consensus 259 ~~---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~ 316 (451)
.. .....+.++++++.+....... +-|...|+-+-..+.+. +.++++.+.++++.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 00 0000126788888888877642 34666666554444444 2345555555555544
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.83 E-value=0.00018 Score=55.62 Aligned_cols=97 Identities=12% Similarity=0.018 Sum_probs=78.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 013010 134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA 213 (451)
Q Consensus 134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 213 (451)
.+..+...+.+.|++++|...++...+.... +...|..+..++...|++++|+..|++..+.. +-+...+..+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455677788899999999999999887532 66778888899999999999999999988753 2357788888889
Q ss_pred HHhcCChHHHHHHHHHhhhCC
Q 013010 214 LCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 214 ~~~~g~~~~a~~~~~~m~~~g 234 (451)
|...|++++|...|++..+..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999887654
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.82 E-value=0.00022 Score=57.33 Aligned_cols=133 Identities=16% Similarity=0.103 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PD----VVAYNCLIDGCCKTYRIERALELFDDMNKK 316 (451)
Q Consensus 242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 316 (451)
.++..+...|...| ++++|...+++..+..-. .+ ..++..+...+...|++++|.+.+++..+.
T Consensus 10 ~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 78 (164)
T 3ro3_A 10 RAFGNLGNTHYLLG-----------NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL 78 (164)
T ss_dssp HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677777777888 666666666655432100 11 245667777778888888888888775542
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 317 ----GCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV----PTSSSYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 317 ----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
+-.+ ...++..+...|...|++++|.+.+++..+..... .....+..+...+...|++++|.+.+++..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 79 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1111 13456666677777888888888777665432101 113355666667777777777777776655
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.81 E-value=4.5e-05 Score=58.50 Aligned_cols=88 Identities=10% Similarity=-0.071 Sum_probs=53.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 013010 145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR 224 (451)
Q Consensus 145 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 224 (451)
.|++++|...|++..+.+...+.+...+..+..+|...|++++|...|++..+.. +-+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4666677777776666532222345566666677777777777777777776643 224566666666777777777777
Q ss_pred HHHHHhhhC
Q 013010 225 FLLEQMELP 233 (451)
Q Consensus 225 ~~~~~m~~~ 233 (451)
..|++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766554
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.81 E-value=0.00016 Score=58.14 Aligned_cols=135 Identities=14% Similarity=-0.021 Sum_probs=80.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC---CCC
Q 013010 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR-PD----VYAYNVVINALCRVGNFNKARFLLEQMELPGFRC---PPD 240 (451)
Q Consensus 169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~p~ 240 (451)
..++..+...+...|++++|...+++..+..-. ++ ..++..+...+...|++++|...+++........ +..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345666777777777777777777776542100 11 2467777778888888888888887765431100 012
Q ss_pred HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK----GFVP-DVVAYNCLIDGCCKTYRIERALELFDDMN 314 (451)
Q Consensus 241 ~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 314 (451)
..++..+...+...| ++++|...+++..+. +..+ ...++..+...+...|++++|.+.+++..
T Consensus 89 ~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQ-----------DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 456677777788888 666666666655432 1111 12345555566666666666666666544
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.68 E-value=0.0011 Score=51.15 Aligned_cols=92 Identities=14% Similarity=0.083 Sum_probs=71.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC---hhhHHHH
Q 013010 292 CLIDGCCKTYRIERALELFDDMNKKGCIPN-R---VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT---SSSYTPI 364 (451)
Q Consensus 292 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~---~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~l 364 (451)
.+...+...|++++|...|+...+.. |+ . ..+..+..+|...|++++|...|++..+.. +.+ ...+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l 82 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence 35566778899999999999887752 32 2 467777888888999999999999888765 223 4567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 013010 365 IHALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 365 i~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
..++...|++++|...|++..+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888899999999999888864
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.68 E-value=0.00019 Score=69.93 Aligned_cols=124 Identities=10% Similarity=-0.034 Sum_probs=96.9
Q ss_pred cccCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHH
Q 013010 99 PAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV 178 (451)
Q Consensus 99 ~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~ 178 (451)
+...+..+...+++++|++.|+...+. .+.+...|..+..+|.+.|++++|.+.+++..+... .+..+|..+..+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~~~~~~~~lg~~ 83 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK---KYIKGYYRRAAS 83 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHH
Confidence 445566677788999999999999864 344678899999999999999999999999998853 367789999999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 013010 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA--LCRVGNFNKARFLLE 228 (451)
Q Consensus 179 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 228 (451)
|...|++++|.+.|++..+.. +-+...+..+..+ +.+.|++++|.+.++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999998753 1234455555555 888899999999998
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.68 E-value=0.00049 Score=53.06 Aligned_cols=96 Identities=15% Similarity=-0.030 Sum_probs=82.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010 171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (451)
Q Consensus 171 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~ 250 (451)
.+..+...+.+.|++++|...|++..+.. +-+...|..+..++...|++++|+..|++..+.. |-+...+..+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 45667778889999999999999998853 3378888999999999999999999999998875 3477889999999
Q ss_pred HHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281 (451)
Q Consensus 251 ~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~ 281 (451)
|.+.| ++++|...+++..+.
T Consensus 95 ~~~~g-----------~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEH-----------NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHH-----------HHHHHHHHHHHHHC-
T ss_pred HHHcC-----------CHHHHHHHHHHHHHh
Confidence 99999 999999999988754
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.62 E-value=0.00013 Score=55.93 Aligned_cols=86 Identities=12% Similarity=0.068 Sum_probs=51.6
Q ss_pred cCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHH
Q 013010 300 TYRIERALELFDDMNKKGC--IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377 (451)
Q Consensus 300 ~g~~~~a~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 377 (451)
.|++++|...|++..+.+. +-+...+..+-..|...|++++|...|++..+.. +-+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence 4566666666666665431 1134556666666667777777777777766654 34455666666667777777777
Q ss_pred HHHHHHHHhC
Q 013010 378 RDFLAELVDG 387 (451)
Q Consensus 378 ~~l~~~m~~~ 387 (451)
.+.+++.++.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777666543
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.59 E-value=0.0012 Score=61.90 Aligned_cols=118 Identities=14% Similarity=0.009 Sum_probs=95.7
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcC--------------CCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRG--------------NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 198 (451)
..+..+...+.+.|++++|.+.|++..+.. .. +.+..+|..+..+|.+.|++++|++.+++..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 357778888999999999999999887610 01 235678899999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 199 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
. +-+...|..+..+|...|++++|...|++..+.. +.+...+..+...+...+
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHH
Confidence 4 3367889999999999999999999999988765 246667777777777666
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.58 E-value=0.001 Score=54.04 Aligned_cols=102 Identities=14% Similarity=-0.000 Sum_probs=82.9
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHc--------CCC-------CCccHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRR--------GNG-------ELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 196 (451)
...+......+.+.|++++|...|...... ... .+.+...|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345677888888999999999999887765 100 11245678889999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010 197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 197 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
+.. +.+...|..+..+|...|++++|...|++.....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 854 3468889999999999999999999999988765
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.58 E-value=0.0011 Score=64.30 Aligned_cols=131 Identities=15% Similarity=0.043 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC----------------HhhHHHHHHHHHhcCCH
Q 013010 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD----------------VVAYNCLIDGCCKTYRI 303 (451)
Q Consensus 240 ~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~ 303 (451)
....|..+...|.+.| ++++|...|++..+. .|+ ...|..+..+|.+.|++
T Consensus 267 ~a~~~~~~G~~~~~~g-----------~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~ 333 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGG-----------KYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 333 (457)
T ss_dssp HHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 4567888889999999 888999999888764 222 47788888999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHH-HHH
Q 013010 304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD-FLA 382 (451)
Q Consensus 304 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-l~~ 382 (451)
++|...++...+.. +-+...|..+-.+|...|++++|+..|++..+.. +-+...+..+...+.+.++.++|.+ ++.
T Consensus 334 ~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 334 TKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERDRRIYA 410 (457)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988763 2367888889999999999999999999998865 4566788888888888888887764 455
Q ss_pred HHHh
Q 013010 383 ELVD 386 (451)
Q Consensus 383 ~m~~ 386 (451)
.|..
T Consensus 411 ~~f~ 414 (457)
T 1kt0_A 411 NMFK 414 (457)
T ss_dssp HC--
T ss_pred HHHh
Confidence 5543
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.58 E-value=0.0012 Score=63.99 Aligned_cols=120 Identities=12% Similarity=-0.023 Sum_probs=97.6
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC------------ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 013010 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL------------VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR 199 (451)
Q Consensus 132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 199 (451)
...|..+...+.+.|++++|...|++..+...... .....|..+..+|.+.|++++|+..|++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45677888999999999999999999888642210 005788999999999999999999999998854
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 200 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
+.+...|..+..+|...|++++|...|++..+.. |-+..++..+..++.+.+
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN---PQNKAARLQISMCQKKAK 399 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHH
Confidence 3468889999999999999999999999998875 346667888888888877
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.58 E-value=0.00024 Score=69.25 Aligned_cols=123 Identities=11% Similarity=-0.068 Sum_probs=95.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 013010 136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC 215 (451)
Q Consensus 136 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 215 (451)
..+...+.+.|++++|.+.+++..+... .+..+|..+..+|.+.|++++|++.|++..+.. +-+..+|..+..+|.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3344556788999999999999988753 267789999999999999999999999999864 346788999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH--HHhcCCchhhhHHHHHHHHHHHHHHH
Q 013010 216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS--YCKYGMQTGCRKAIRRRIWEANHLFR 276 (451)
Q Consensus 216 ~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~--~~~~g~~~~~~~~~~~~~~~a~~~~~ 276 (451)
..|++++|.+.|++..+..- .+...+..+..+ +.+.| ++++|.+.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~g-----------~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKP---HDKDAKMKYQECNKIVKQK-----------AFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHST---TCTTHHHHHHHHHHHHHHH-----------HHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHH-----------HHHHHhcccc
Confidence 99999999999999887642 233445555444 77777 8888888877
No 187
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.53 E-value=0.05 Score=49.66 Aligned_cols=171 Identities=8% Similarity=0.007 Sum_probs=109.4
Q ss_pred HccCChh-HHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010 143 ARGNNVK-GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL----------VNEALATFYRMKQFRCRPDVYAYNVVI 211 (451)
Q Consensus 143 ~~~g~~~-~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li 211 (451)
.+.|.+. +|+++++.+...+.. +..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~---~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3455554 789999999888633 44456654333333222 678888888887743 34778888777
Q ss_pred HHHHhcC--ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHH-HHHHHHHHHHHHhcCCCCCHh
Q 013010 212 NALCRVG--NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR-IWEANHLFRLMLFKGFVPDVV 288 (451)
Q Consensus 212 ~~~~~~g--~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~ 288 (451)
..+...+ .+++++.+++.+.+.. +-|..+|+--.-.+...| . ++++++.++.+.+.. +-|..
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~-----------~~~~eel~~~~~~I~~~-p~N~S 180 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAA-----------VAPAEELAFTDSLITRN-FSNYS 180 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CCHHHHHHHHHHHHHHC-SCCHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhC-----------cCHHHHHHHHHHHHHHC-CCCHH
Confidence 7777777 4788888888888775 347778877777777776 4 577888888887754 34666
Q ss_pred hHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013010 289 AYNCLIDGCCKT--------------YRIERALELFDDMNKKGCIPNRVTYNSFIRYYS 333 (451)
Q Consensus 289 ~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 333 (451)
.|+.....+.+. +.++++++.+....... +-|...|+-+-..+.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 666655555544 33566666666655542 114555554433333
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.53 E-value=0.0014 Score=53.09 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CC---------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMNKK-------GC---------IP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~---------~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
..+...-..+.+.|++++|...|....+. +- .| +...|..+..+|.+.|++++|+..+++..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 44566677888999999999999887654 00 12 346788888899999999999999999988
Q ss_pred cCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 013010 351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393 (451)
Q Consensus 351 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 393 (451)
.. +.+...|..+..+|...|++++|...|++.++. .|+.
T Consensus 92 ~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 92 RE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred cC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 76 567888999999999999999999999988874 3553
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.46 E-value=0.0044 Score=48.87 Aligned_cols=113 Identities=15% Similarity=0.137 Sum_probs=94.6
Q ss_pred hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh----cCC
Q 013010 109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE----EGL 184 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~----~g~ 184 (451)
..+.++|++.|+...+. | .+ ..+ |...|...+.+++|.+.|++..+.| +...+..|-..|.. .++
T Consensus 8 ~~d~~~A~~~~~~aa~~-g-~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL-N-EM--FGC--LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CT--THH--HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCC
T ss_pred ccCHHHHHHHHHHHHcC-C-CH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCcc
Confidence 45688999999998865 4 22 233 7777878889999999999999886 56678888888888 899
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCC
Q 013010 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGF 235 (451)
Q Consensus 185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 235 (451)
.++|.++|++..+.| +...+..|-..|.. .++.++|.++|++..+.|.
T Consensus 77 ~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 77 LRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999999999865 67888888888888 8999999999999998873
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.41 E-value=0.0099 Score=46.78 Aligned_cols=112 Identities=10% Similarity=-0.002 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 013010 266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV----VNEIDKA 341 (451)
Q Consensus 266 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A 341 (451)
+++++|.+.|++..+.| .++ .. +-..|...+..++|.+.|+...+.| +...+..|-..|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 48889999999988877 233 23 5566666777888999999888875 66777777777877 7899999
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 013010 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCE----AGRVLEARDFLAELVDGGS 389 (451)
Q Consensus 342 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 389 (451)
.+.|++..+.+. ...+..|-..|.. .++.++|.++|++..+.|.
T Consensus 81 ~~~~~~Aa~~g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999888653 5667777777877 7889999999988888764
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.40 E-value=0.0026 Score=59.69 Aligned_cols=123 Identities=9% Similarity=-0.021 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc--------------CC-CCCHhhHHHHHHHHHhcCCHHHH
Q 013010 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK--------------GF-VPDVVAYNCLIDGCCKTYRIERA 306 (451)
Q Consensus 242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~--------------~~-~~~~~~~~~li~~~~~~g~~~~a 306 (451)
..+..+...+.+.| ++++|...|++..+. .. +.+..+|..+..+|.+.|++++|
T Consensus 224 ~~~~~~g~~~~~~g-----------~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A 292 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQ-----------NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGA 292 (370)
T ss_dssp HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 45677788889999 666676666665541 01 11345566666666677777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 013010 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR 378 (451)
Q Consensus 307 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 378 (451)
.+.+++..+.. +-+...|..+-.+|...|++++|+..|++..+.. +-+...+..+...+...++.+++.
T Consensus 293 ~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 293 VDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666542 1245666666666677777777777777666654 234445555555555555555443
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.36 E-value=0.0071 Score=48.64 Aligned_cols=106 Identities=14% Similarity=0.064 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 013010 290 YNCLIDGCCKTYRIERALELFDDMNKKGCI-P-----NR-----VTYNSFIRYYSVVNEIDKAIEMMRKMQNL------- 351 (451)
Q Consensus 290 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-----~~-----~t~~~li~~~~~~g~~~~A~~~~~~m~~~------- 351 (451)
+...-..+.+.|++++|...|+...+..-. | +. ..|..+-.++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 444556677889999999999887764211 0 22 37888888888999999999999888876
Q ss_pred CCCCCChhhH----HHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 013010 352 NHGVPTSSSY----TPIIHALCEAGRVLEARDFLAELVD-----GGSVPREYTYK 397 (451)
Q Consensus 352 ~~~~p~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~ 397 (451)
. +-+...| ...-.++...|++++|+..|++.++ .|+.+......
T Consensus 94 ~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 94 N--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp T--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred C--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 4 3455677 7788888889999999999888763 35555544333
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00035 Score=52.38 Aligned_cols=93 Identities=10% Similarity=-0.027 Sum_probs=63.0
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD------- 203 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------- 203 (451)
+...+..+...+.+.|++++|.+.+++..+.... +...|..+..++...|++++|++.|++..+. .|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHH
Confidence 3456677777888888888888888888776522 5566777888888888888888888888764 344
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHH
Q 013010 204 VYAYNVVINALCRVGNFNKARFLLE 228 (451)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~a~~~~~ 228 (451)
...+..+..++...|+.+.|...++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 3445555555555555555544433
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0025 Score=47.46 Aligned_cols=88 Identities=9% Similarity=-0.068 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-------H
Q 013010 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-------E 393 (451)
Q Consensus 321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~ 393 (451)
+...+..+-..+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+++.++.. |+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 34455566666667777777777777766654 3455666666667777777777777777766532 33 3
Q ss_pred HHHHHHHHHHHhcCCCchH
Q 013010 394 YTYKLVCDALNAAEEPSLL 412 (451)
Q Consensus 394 ~t~~~li~~~~~~g~~~~a 412 (451)
..+..+..++...|+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHhHhhh
Confidence 3444455555555554443
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.20 E-value=0.0042 Score=49.96 Aligned_cols=93 Identities=15% Similarity=0.038 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----
Q 013010 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPD-------------VYAYNVVINALCRVGNFNKARFLLEQMELP----- 233 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 233 (451)
+......+.+.|++++|+..|++..+. .|+ ...|+.+-.++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344445555566666666666666552 222 237888888888888888888888887765
Q ss_pred --CCCCCCCHHHH----HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010 234 --GFRCPPDVYTY----TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280 (451)
Q Consensus 234 --g~~~~p~~~~~----~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~ 280 (451)
. |-+...| ...-.++...| ++++|+..|++..+
T Consensus 92 e~~---pd~~~A~~~~~~~rG~aL~~lg-----------r~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELN---QDEGKLWISAVYSRALALDGLG-----------RGAEAMPEFKKVVE 130 (159)
T ss_dssp CTT---STHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHH
T ss_pred cCC---CchHHHHHHHHHhHHHHHHHCC-----------CHHHHHHHHHHHHh
Confidence 4 2355677 88899999999 88899988887764
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.19 E-value=0.0019 Score=59.79 Aligned_cols=132 Identities=10% Similarity=-0.051 Sum_probs=80.6
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccH-----------------HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTT-----------------SSVTCLIKVLGEEGLVNEALATFYRM 195 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-----------------~~~~~li~~~~~~g~~~~A~~~~~~m 195 (451)
..+..+...+.+.|++++|...|++....... +. ..|..+..+|.+.|++++|+..|++.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~---~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD---DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH---HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44667788888999999999999998776421 11 27888999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHH
Q 013010 196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF 275 (451)
Q Consensus 196 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~ 275 (451)
.+.. +.+...|..+..+|...|++++|...|++..+.. |-+...+..+........ +..+.+...|
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~---p~~~~a~~~L~~l~~~~~----------~~~~~a~~~~ 322 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA---PDDKAIRRELRALAEQEK----------ALYQKQKEMY 322 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 8753 3468899999999999999999999999988664 224444444444322222 1556777777
Q ss_pred HHHHhc
Q 013010 276 RLMLFK 281 (451)
Q Consensus 276 ~~m~~~ 281 (451)
..|...
T Consensus 323 ~~~l~~ 328 (338)
T 2if4_A 323 KGIFKG 328 (338)
T ss_dssp ------
T ss_pred HHhhCC
Confidence 777643
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.16 E-value=0.0048 Score=43.94 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=45.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (451)
Q Consensus 169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li 248 (451)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...|++..... |.+..++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCHHHHHHHH
Confidence 3455556666666666666666666665532 2245556666666666666666666666665543 22444555444
Q ss_pred HHHH
Q 013010 249 SSYC 252 (451)
Q Consensus 249 ~~~~ 252 (451)
..+.
T Consensus 85 ~~~~ 88 (91)
T 1na3_A 85 NAKQ 88 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 198
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.13 E-value=0.061 Score=52.38 Aligned_cols=205 Identities=10% Similarity=-0.009 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 013010 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228 (451)
Q Consensus 149 ~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 228 (451)
+.+..+|++...... .+...|-..+..+.+.|+.++|..+|++.... +.+...|. .|+...+.++. ++
T Consensus 196 ~Rv~~~ye~al~~~p---~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~ 263 (493)
T 2uy1_A 196 SRMHFIHNYILDSFY---YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YG 263 (493)
T ss_dssp HHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HH
T ss_pred HHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HH
Confidence 446778888877642 24667888888888999999999999999986 33433333 23332222222 22
Q ss_pred HhhhCC---------CC-CCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHH--HHHHH
Q 013010 229 QMELPG---------FR-CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN--CLIDG 296 (451)
Q Consensus 229 ~m~~~g---------~~-~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~ 296 (451)
.+.+.- .. .......|...+..+.+.+ ..+.|..+|... ... ..+...|- +.+..
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~-----------~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR-----------GLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHH-----------CHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 222110 00 0011244555666655555 788899999988 321 12333333 22222
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHH
Q 013010 297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE 376 (451)
Q Consensus 297 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 376 (451)
.+ .++.+.|..+|+...+.. +-+...+...+......|+.+.|..+|+... -....|...+.-=...|+.+.
T Consensus 331 ~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~ 402 (493)
T 2uy1_A 331 YA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMEL 402 (493)
T ss_dssp HH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHH
T ss_pred HH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHH
Confidence 22 346999999999987752 1134556677887888999999999999973 246778887777677899999
Q ss_pred HHHHHHHHHh
Q 013010 377 ARDFLAELVD 386 (451)
Q Consensus 377 A~~l~~~m~~ 386 (451)
+.+++++..+
T Consensus 403 ~r~v~~~~~~ 412 (493)
T 2uy1_A 403 FRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887763
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.11 E-value=0.0015 Score=60.56 Aligned_cols=113 Identities=12% Similarity=-0.014 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320 (451)
Q Consensus 241 ~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 320 (451)
...+..+...+.+.| ++++|...|.+.... .|+... +...++.+++...+.
T Consensus 179 a~~~~~~g~~~~~~g-----------~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~--------- 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEE-----------KLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK--------- 229 (338)
T ss_dssp HHHHHHHHHHTCSSS-----------CCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH---------
Confidence 345666777778888 777888888876654 233221 111222222221110
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 230 -~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 230 -NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp -THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1244445555555555555555555555443 2344455555555555555555555555544
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.07 E-value=0.037 Score=54.93 Aligned_cols=184 Identities=9% Similarity=-0.054 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCC----------hhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNN----------VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE 181 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~ 181 (451)
-++|++.++.+... -+-+...|+.--.++...|+ ++++.++++.+.+.+.+ +..+|+.-...+.+
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK---~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGTWHHRCWLLSR 119 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence 37889999998864 23345567766666666666 89999999999998744 77789988888889
Q ss_pred cC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCch
Q 013010 182 EG--LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT 258 (451)
Q Consensus 182 ~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~ 258 (451)
.| +++++++.++++.+.. +-+..+|+--..++.+.| .++++++.++++.+... -|..+|+.....+.+.+...
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p---~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---SNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC---CCHHHHHHHHHHHHHHSCCC
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC---CCccHHHHHHHHHHhhcccc
Confidence 99 7799999999999965 347889998888888888 89999999999998764 58888888888777643221
Q ss_pred hhh---HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH
Q 013010 259 GCR---KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER 305 (451)
Q Consensus 259 ~~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 305 (451)
.+. ....+.++++.+.+++..... +-|...|+-.-..+.+.++.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 100 000127889999998887653 3466778877777777666433
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.02 E-value=0.0055 Score=58.56 Aligned_cols=95 Identities=14% Similarity=-0.014 Sum_probs=74.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHHc-----CCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCC-CHH
Q 013010 138 MGIVFARGNNVKGLWDFLKDMSRR-----GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF-----R-CRP-DVY 205 (451)
Q Consensus 138 ll~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~ 205 (451)
.+..+.+.|++++|..++++..+. |...+....+++.|...|...|++++|+.++++..+. | -.| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345566789999999999998765 2222335678999999999999999999999988652 2 123 356
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhh
Q 013010 206 AYNVVINALCRVGNFNKARFLLEQMEL 232 (451)
Q Consensus 206 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 232 (451)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 789999999999999999999988743
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.99 E-value=0.0046 Score=46.67 Aligned_cols=78 Identities=19% Similarity=0.087 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 013010 151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230 (451)
Q Consensus 151 a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 230 (451)
|...++...+... .+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus 4 a~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQGT---DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444331 134445555555555566666666555555432 123445555555555666666666665555
Q ss_pred hh
Q 013010 231 EL 232 (451)
Q Consensus 231 ~~ 232 (451)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.95 E-value=0.0066 Score=45.75 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 306 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
|.+.|++..+.. +-+...+..+...|...|++++|...|++..+.. +.+...|..+...|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555544432 1245555666666666666666666666666554 3345556666666666666666666666554
Q ss_pred h
Q 013010 386 D 386 (451)
Q Consensus 386 ~ 386 (451)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.92 E-value=0.075 Score=52.73 Aligned_cols=183 Identities=9% Similarity=-0.061 Sum_probs=132.2
Q ss_pred hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 013010 220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299 (451)
Q Consensus 220 ~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 299 (451)
.++|++.++++.... |-+..+|+.--..+...|...+ .+.....++++++.++.+.+.. +-+..+|+---..+.+
T Consensus 45 ~eeal~~~~~~l~~n---P~~~taW~~R~~~l~~l~~~~~-~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 45 DESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKS-PEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp SHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC---chhHHHHHHHHHHHHhcccccc-hhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 467788888888765 2355666655555555442100 0111124889999999998763 3366777777777888
Q ss_pred cC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc-----
Q 013010 300 TY--RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN-EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA----- 371 (451)
Q Consensus 300 ~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----- 371 (451)
.+ +++++.+.++.+.+.... +..+|+.--..+.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccccc
Confidence 88 779999999999987533 7888888877888888 8999999999999876 57888888877777663
Q ss_pred ---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCch
Q 013010 372 ---------GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL 411 (451)
Q Consensus 372 ---------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 411 (451)
+.+++|.+++++.+... +-+...|.-+-..+.+.|+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999888743 2256777777777777776543
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.91 E-value=0.013 Score=41.58 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 323 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
..+..+-..|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444455555555555555555555443 23344555555555555555555555555544
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.88 E-value=0.0034 Score=59.99 Aligned_cols=89 Identities=7% Similarity=-0.128 Sum_probs=70.0
Q ss_pred ccCChhHHHHHHHHHHHc-----CCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCC-CHHHHHHHH
Q 013010 144 RGNNVKGLWDFLKDMSRR-----GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF-----R-CRP-DVYAYNVVI 211 (451)
Q Consensus 144 ~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~~~li 211 (451)
..|++++|..++++..+. |...+....+++.|...|...|++++|+.++++..+. | -.| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999887653 3333345678999999999999999999999988652 2 123 356789999
Q ss_pred HHHHhcCChHHHHHHHHHhhh
Q 013010 212 NALCRVGNFNKARFLLEQMEL 232 (451)
Q Consensus 212 ~~~~~~g~~~~a~~~~~~m~~ 232 (451)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988643
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.82 E-value=0.0069 Score=44.52 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
+...+..+-..|...|++++|+..|++..+.. +-+...|..+-.+|...|++++|.+.|++.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555566666666666666666666554 3344455566666666666666666665554
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.69 E-value=0.0085 Score=57.22 Aligned_cols=93 Identities=14% Similarity=-0.001 Sum_probs=70.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC---CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCCCHH
Q 013010 175 LIKVLGEEGLVNEALATFYRMKQFR---CRP----DVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVY 242 (451)
Q Consensus 175 li~~~~~~g~~~~A~~~~~~m~~~g---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~p~~~ 242 (451)
.+..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++... .|-.+|-...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667899999999999987631 222 356789999999999999999999988753 3544444557
Q ss_pred HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 013010 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278 (451)
Q Consensus 243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m 278 (451)
+++.|...|...| ++++|+.++++.
T Consensus 373 ~l~nLa~~~~~~g-----------~~~eA~~~~~~A 397 (429)
T 3qwp_A 373 QVMKVGKLQLHQG-----------MFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTT-----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-----------CHHHHHHHHHHH
Confidence 8999999999999 555555555544
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.67 E-value=0.0063 Score=58.11 Aligned_cols=89 Identities=8% Similarity=-0.140 Sum_probs=70.5
Q ss_pred hcCHHHHHHHHHHHhhc--CCCCC----CHHhHHHHHHHHHccCChhHHHHHHHHHHHc-----CCCCCccHHhHHHHHH
Q 013010 109 TLGLNKATEFYHWVERF--FDFFH----NEMTCKEMGIVFARGNNVKGLWDFLKDMSRR-----GNGELVTTSSVTCLIK 177 (451)
Q Consensus 109 ~~~~~~A~~~f~~~~~~--~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~~~li~ 177 (451)
.|++++|+.+++...+. .-+.| ...+++.|..+|...|++++|..++++..+. |...+....+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35678999998887652 11222 2568999999999999999999999987653 4444456788999999
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 013010 178 VLGEEGLVNEALATFYRMKQ 197 (451)
Q Consensus 178 ~~~~~g~~~~A~~~~~~m~~ 197 (451)
.|...|++++|+.+|++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.57 E-value=0.013 Score=43.06 Aligned_cols=64 Identities=9% Similarity=0.111 Sum_probs=35.1
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 197 (451)
+...+..+...+.+.|++++|...|++..+.+.. +...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555666666666666655555422 333455555556666666666665555443
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.44 E-value=0.0057 Score=49.08 Aligned_cols=57 Identities=25% Similarity=0.224 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010 186 NEALATFYRMKQFRCRP-DVYAYNVVINALCRV-----------GNFNKARFLLEQMELPGFRCPPDVYTYTILI 248 (451)
Q Consensus 186 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li 248 (451)
++|+..|++..+. .| +..+|..+-.+|... |++++|.+.|++..+.. |+...|...+
T Consensus 63 ~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~----P~~~~y~~al 131 (158)
T 1zu2_A 63 QEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ----PDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC----CCCHHHHHHH
Confidence 3555555555542 22 344555555555544 35666666666666543 5544444333
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.34 E-value=0.013 Score=46.91 Aligned_cols=115 Identities=11% Similarity=-0.029 Sum_probs=86.1
Q ss_pred hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCCh----------hHHHHHHHHHHHcCCCCCccHHhHHHH
Q 013010 106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNV----------KGLWDFLKDMSRRGNGELVTTSSVTCL 175 (451)
Q Consensus 106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----------~~a~~~~~~m~~~~~~~~~~~~~~~~l 175 (451)
..+.+.+++|+..++...+. -+.+...|+.+..++...+++ ++|...|++..+.+.. ...+|..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHHH
Confidence 33445588999999988864 344778888888888888765 5999999999998633 66789999
Q ss_pred HHHHHhcC-----------CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 013010 176 IKVLGEEG-----------LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233 (451)
Q Consensus 176 i~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 233 (451)
-.+|...| ++++|.+.|++..+ +.|+...|...+... ++|.++.-++...
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~------~ka~el~~~~~~~ 147 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH------HhCHhccCccccc
Confidence 99998774 89999999999998 568877776655543 3444544444433
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.94 E-value=0.13 Score=47.34 Aligned_cols=73 Identities=10% Similarity=0.063 Sum_probs=54.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhH
Q 013010 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY 361 (451)
Q Consensus 284 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 361 (451)
+.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++....+ |...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~---P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR---PGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCcChH
Confidence 4566777777666666788888888888887775 677777777777778888888888888877764 555554
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.73 E-value=1.2 Score=41.01 Aligned_cols=75 Identities=15% Similarity=0.024 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013010 319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL 398 (451)
Q Consensus 319 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 398 (451)
..+..+|..+...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|.+.... .|...||..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 4478888888777777899999999999999875 67777777778888899999999999888764 577766643
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.43 E-value=0.25 Score=51.12 Aligned_cols=95 Identities=17% Similarity=0.272 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (451)
++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.+ |..+...|...|+.+...++-+
T Consensus 667 ~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 667 QLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp CHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence 556665554322 2445666666666666666666666665543 2334444444555555555544
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 013010 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383 (451)
Q Consensus 347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 383 (451)
.....| -++....+|.+.|++++|.+++.+
T Consensus 732 ~a~~~~-------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 732 DAETTG-------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHcC-------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 444433 123333445555555555555544
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.12 E-value=0.15 Score=36.69 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=35.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 295 DGCCKTYRIERALELFDDMNKKGCIPNRV-TYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
..+...|++++|.+.++...+.. +-+.. .+..+-.+|...|++++|.+.|++..+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44556677777777777666542 11345 66666666667777777777777766654
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.63 E-value=0.39 Score=34.33 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=49.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 013010 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGG 388 (451)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g 388 (451)
....+...|++++|...+++..+.. +.+.. .+..+-.+|...|++++|.+.|++.++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456778999999999999998875 45667 88888899999999999999999998754
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.54 E-value=0.62 Score=36.83 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 321 NRVTYNSFIRYYSVVN---EIDKAIEMMRKMQNLNHGVP--TSSSYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 321 ~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
+..+--.+-.++++.+ ++++++.++++..+.. .| ....+-.|--+|.+.|++++|.++++.+++
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4444444444444444 3334444444444432 12 122222333344555555555555555544
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.53 E-value=0.48 Score=48.94 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=96.2
Q ss_pred HccCChhHHHH-HHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 013010 143 ARGNNVKGLWD-FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221 (451)
Q Consensus 143 ~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 221 (451)
...+++++|.+ ++..+. +......++..+.+.|..++|+++.+.-. .-.......|+++
T Consensus 610 ~~~~~~~~a~~~~l~~i~--------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHhCCHHHHHHHHHhcCC--------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 34678888876 442211 02224677788888899998887763211 1123356679999
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 013010 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY 301 (451)
Q Consensus 222 ~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 301 (451)
.|.++.+.+ .+...|..+...+.+.+ +++.|++.|..+.. |..+...+...|
T Consensus 670 ~A~~~~~~~--------~~~~~W~~la~~al~~~-----------~~~~A~~~y~~~~d---------~~~l~~l~~~~~ 721 (814)
T 3mkq_A 670 LARDLLTDE--------SAEMKWRALGDASLQRF-----------NFKLAIEAFTNAHD---------LESLFLLHSSFN 721 (814)
T ss_dssp HHHHHHTTC--------CCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHTC---------HHHHHHHHHHTT
T ss_pred HHHHHHHhh--------CcHhHHHHHHHHHHHcC-----------CHHHHHHHHHHccC---------hhhhHHHHHHcC
Confidence 998885433 36788999999999999 88899998887743 345556666677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013010 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK 347 (451)
Q Consensus 302 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 347 (451)
+.+...++-+.....|. ++.-..+|.+.|++++|++++.+
T Consensus 722 ~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 722 NKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp CHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 77776666555555432 23333345556666666655544
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.47 E-value=0.25 Score=39.13 Aligned_cols=87 Identities=15% Similarity=0.056 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccC---ChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGN---NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 188 (451)
+..+.+-|...... +. ++..+.-.+.-++++++ +++++..+++...+.+ .|......+-.|--+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 56666777666543 33 56677666888888887 6668888888888764 1212345566677778888888888
Q ss_pred HHHHHHHhhCCCCCC
Q 013010 189 LATFYRMKQFRCRPD 203 (451)
Q Consensus 189 ~~~~~~m~~~g~~p~ 203 (451)
.+.++.+.+ +.|+
T Consensus 91 ~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHHH--HCTT
T ss_pred HHHHHHHHh--cCCC
Confidence 888888887 4564
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.42 E-value=0.43 Score=34.23 Aligned_cols=66 Identities=6% Similarity=-0.091 Sum_probs=42.1
Q ss_pred CCHHhHHHHHHHHHccCC---hhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 013010 130 HNEMTCKEMGIVFARGNN---VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF 198 (451)
Q Consensus 130 ~~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 198 (451)
.|...+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 355555566665543333 57777777777776522 4555666667777777777777777777764
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.35 E-value=0.4 Score=34.41 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 338 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
.++|..++++..+.. +-++.....+-..+.+.|++++|...++++.+
T Consensus 25 ~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444443 23333444444444444444444444444443
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.32 E-value=1.4 Score=33.97 Aligned_cols=76 Identities=11% Similarity=0.066 Sum_probs=62.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHHHHHhhc
Q 013010 357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMK 433 (451)
Q Consensus 357 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 433 (451)
+...+...++.+..+|+-+.-.+++.++.. +..|++...-.+..||.+-|+..++.+++.+.=++|++.....+..
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kEAC~~in~ 165 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKEACNAVNT 165 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHHHHHHHHh
Confidence 456677888889999999999999888644 4567888888999999999999999999999999999877655443
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.08 E-value=1.5 Score=33.68 Aligned_cols=84 Identities=11% Similarity=-0.035 Sum_probs=64.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh
Q 013010 182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261 (451)
Q Consensus 182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~ 261 (451)
+|++..+...|-.+- .+...++..++.+...|+-|...+++.++.... +|+....-.+..+|.+.|
T Consensus 74 C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~---~~~~~~l~kia~Ay~Klg------ 139 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN---EVSASILVAIANALRRVG------ 139 (172)
T ss_dssp CSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C---CSCHHHHHHHHHHHHHTT------
T ss_pred hhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC---CCChHHHHHHHHHHHHhc------
Confidence 344444444444332 356777888999999999999999999954432 488899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 013010 262 KAIRRRIWEANHLFRLMLFKGFV 284 (451)
Q Consensus 262 ~~~~~~~~~a~~~~~~m~~~~~~ 284 (451)
+..+|.+++.+.-+.|++
T Consensus 140 -----~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 140 -----DERDATTLLIEACKKGEK 157 (172)
T ss_dssp -----CHHHHHHHHHHHHHTTCH
T ss_pred -----chhhHHHHHHHHHHhhhH
Confidence 888999999999988865
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.58 E-value=0.61 Score=34.10 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=34.0
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCC----CCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010 131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGN----GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ 197 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 197 (451)
+...+-.|...+.+.|+++.|...++...+... .......++..|..+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344455555555566666666666655544310 0112334455555555555555555555555554
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.37 E-value=1.4 Score=35.71 Aligned_cols=101 Identities=8% Similarity=-0.089 Sum_probs=70.9
Q ss_pred hhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHH
Q 013010 107 KVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN 186 (451)
Q Consensus 107 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~ 186 (451)
-..|+++.|.++-+.+. +...|..|.....+.|+++-|.+.|..... +..+.-.|...|+.+
T Consensus 16 L~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHTCHH
T ss_pred HhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhCCHH
Confidence 34567888888876653 677889999988889999998888876422 556666677778887
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 013010 187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME 231 (451)
Q Consensus 187 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 231 (451)
+-..+-+.....| -+|.....+.-.|+++++.++|.+..
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 7666655555443 24444555666788888888886543
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.37 E-value=2.7 Score=34.11 Aligned_cols=95 Identities=14% Similarity=0.183 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (451)
+++.|.++.+++ -+...|..|-......|+++-|.+.|....+ |..+.--|.-.|+.++-..+-+
T Consensus 20 ~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 20 NLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp CHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHH
Confidence 888888887766 2678999999999999999999999998664 4456666777888888777766
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 013010 347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE 383 (451)
Q Consensus 347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 383 (451)
.....| -++.....+.-.|+++++.++|.+
T Consensus 85 iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 85 IAQTRE-------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 665554 356666777788999999998743
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.07 E-value=1 Score=32.85 Aligned_cols=63 Identities=11% Similarity=0.036 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010 289 AYNCLIDGCCKTYRIERALELFDDMNKK------GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL 351 (451)
Q Consensus 289 ~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 351 (451)
-+-.+...+.+.|+++.|...|+...+. +-.+....+..|..+|.+.|+++.|...+++..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3444555555666666666666554432 01123445555555555666666666666555543
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.30 E-value=1.3 Score=39.27 Aligned_cols=95 Identities=7% Similarity=0.022 Sum_probs=57.9
Q ss_pred cCHHHHHHHHHHHhhcCCCCCC---HHhHHHHHHHHHc-----cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh
Q 013010 110 LGLNKATEFYHWVERFFDFFHN---EMTCKEMGIVFAR-----GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE 181 (451)
Q Consensus 110 ~~~~~A~~~f~~~~~~~~~~~~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~ 181 (451)
..+.+|...+++..+ +.|+ -..|..|...|.+ .|+.++|.+.|++..+.+... +..++......++.
T Consensus 177 ~~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~--~id~~v~YA~~l~~ 251 (301)
T 3u64_A 177 DTVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH--DPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT--CSHHHHHHHHHTTT
T ss_pred HhHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC--CchHHHHHHHHHHH
Confidence 335666666666654 2444 4467777777776 377777777777777765321 24445666666666
Q ss_pred c-CCHHHHHHHHHHHhhCCCC--CCHHHHHH
Q 013010 182 E-GLVNEALATFYRMKQFRCR--PDVYAYNV 209 (451)
Q Consensus 182 ~-g~~~~A~~~~~~m~~~g~~--p~~~~~~~ 209 (451)
. |+.+++.+.+++....... |+....|.
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 3 7777777777777765544 55444443
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.22 E-value=0.98 Score=42.23 Aligned_cols=73 Identities=14% Similarity=0.026 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-----hCCCCCCHHHHHHH
Q 013010 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV-----DGGSVPREYTYKLV 399 (451)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t~~~l 399 (451)
...++..+...|+.++|...+..+.... +.+...|..++.+|.+.|+..+|.+.|+.+. +.|+.|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4456777788899999998888887765 6778889999999999999999998888765 34999987754443
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.80 E-value=2.5 Score=37.36 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhcCCCCC---HhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc-
Q 013010 267 RIWEANHLFRLMLFKGFVPD---VVAYNCLIDGCCKT-----YRIERALELFDDMNKKGCIP--NRVTYNSFIRYYSVV- 335 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~- 335 (451)
....|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+. .| +..++......++..
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhc
Confidence 455666666666654 343 44566666666663 6777777777776665 34 255666666666663
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 013010 336 NEIDKAIEMMRKMQNLNH 353 (451)
Q Consensus 336 g~~~~A~~~~~~m~~~~~ 353 (451)
|+.+++.+.+++......
T Consensus 254 gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDP 271 (301)
T ss_dssp TCHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 677777777777666543
No 232
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=90.57 E-value=0.66 Score=42.53 Aligned_cols=99 Identities=12% Similarity=0.157 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 013010 323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR--VLEARDFLAELVDGGSVPREYTYKLVC 400 (451)
Q Consensus 323 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~li 400 (451)
...+.++.-|...|+.++|.+.++++..... -.......+..++-+.++ .+.+.+++..+...|+-+.......+.
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~f--hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHF--HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTC--HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcc--hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3457889999999999999999999864221 123345556666665543 466889999999988887766665555
Q ss_pred HHHHhcCC----CchHHHHHHHHHHhc
Q 013010 401 DALNAAEE----PSLLDDGLRKRIRDG 423 (451)
Q Consensus 401 ~~~~~~g~----~~~a~~~~~~~~~~g 423 (451)
..+....+ .-.|...+.+.+...
T Consensus 296 ~vl~~ldDl~lDiP~A~~~la~~vara 322 (358)
T 3eiq_C 296 RIYNEIPDINLDVPHSYSVLERFVEEC 322 (358)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHhccHhhcccccHHHHHHHHHHHH
Confidence 55544433 334566666665433
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.49 E-value=0.61 Score=35.51 Aligned_cols=95 Identities=8% Similarity=0.081 Sum_probs=59.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCC--ChhhHHHHHHH
Q 013010 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK---AIEMMRKMQNLNHGVP--TSSSYTPIIHA 367 (451)
Q Consensus 293 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~p--~~~~~~~li~~ 367 (451)
++..-.....+..+.+-|......|. |+..+--.+..++.+..+... ++.++.+..+.+ .| .....-.|.-+
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHH
Confidence 34444444455566666666555443 666666667777777776555 778888777654 24 22233344556
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC
Q 013010 368 LCEAGRVLEARDFLAELVDGGSVPR 392 (451)
Q Consensus 368 ~~~~g~~~~A~~l~~~m~~~g~~p~ 392 (451)
+.+.|++++|.++++.+++ +.|+
T Consensus 84 ~yklg~Y~~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHhhhHHHHHHHHHHHHH--hCCC
Confidence 7788888888888888876 3454
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.36 E-value=4.3 Score=31.87 Aligned_cols=115 Identities=10% Similarity=-0.013 Sum_probs=75.0
Q ss_pred CHHhHHHHHHHHHccCCh------hHHHHHHHHHHHcCCCCCccHHhHHHHHHHH------HhcCCHHHHHHHHHHHhhC
Q 013010 131 NEMTCKEMGIVFARGNNV------KGLWDFLKDMSRRGNGELVTTSSVTCLIKVL------GEEGLVNEALATFYRMKQF 198 (451)
Q Consensus 131 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~------~~~g~~~~A~~~~~~m~~~ 198 (451)
|..+|-..+..+-+.|+. ++..++|++....- +|.. ...|..-|..+ ...+++++|.++|+.+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k-~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDK-YGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGG-GTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-Cccc-cccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 555666666666666776 67777887776653 3321 22222222211 2347899999999999764
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010 199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251 (451)
Q Consensus 199 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~ 251 (451)
+-+. ...|-.....-.+.|++..|.+++......+- -+.....+.|.-+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~---k~~~~le~a~~nl 138 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA---VPLEMLEIALRNL 138 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---BCHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC---CcHHHHHHHHHhh
Confidence 2222 67777777777889999999999999998763 3555666666554
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.81 E-value=1.3 Score=41.47 Aligned_cols=70 Identities=11% Similarity=-0.020 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCCCHHHH
Q 013010 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYTY 244 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~p~~~~~ 244 (451)
...++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|++..+ .|+. |+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~--P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID--PGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC--CCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC--CCHHHH
Confidence 4556666777777777777777776532 44667777777777777777777777776543 3654 665543
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.07 E-value=19 Score=36.58 Aligned_cols=127 Identities=13% Similarity=0.042 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCCCCHHHHH--HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc--
Q 013010 207 YNVVINALCRVGN-FNKARFLLEQMELPGFRCPPDVYTYT--ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-- 281 (451)
Q Consensus 207 ~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~p~~~~~~--~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~-- 281 (451)
...++..+...++ ++.|..+|+++.... |...++. .++..+...++ .--+|.+++.+..+.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~----p~~~~~~~~~~i~~~~~~~~----------~Ev~av~ll~~~l~~~~ 316 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD----PIHDIYYKTAMITILDHIET----------KELDMITILNETLDPLL 316 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHTTCGG----------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC----CchhHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHhh
Confidence 3455555555666 588999999998875 5433332 23333333221 112333333333211
Q ss_pred ----CCCC-CH----------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 013010 282 ----GFVP-DV----------VAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMM 345 (451)
Q Consensus 282 ----~~~~-~~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~ 345 (451)
...+ +. ...+.-..-|...|+++.|.++-++.... .| +..||-.|..+|...|+++.|+-.+
T Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 317 SLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 1111 11 12222234456789999999999998775 56 5899999999999999999999999
Q ss_pred HHHH
Q 013010 346 RKMQ 349 (451)
Q Consensus 346 ~~m~ 349 (451)
+.+.
T Consensus 395 NScP 398 (754)
T 4gns_B 395 NSMP 398 (754)
T ss_dssp HHSC
T ss_pred hcCC
Confidence 9874
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.50 E-value=2.4 Score=30.59 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~ 250 (451)
+.-++.+-++.+...++.|++....+.+.+|-|.+++..|.++|+-.+..-. +...+|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~---~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG---PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---CchhhHHHHHHH
Confidence 5567777788888888888888888888888888888888888888776532 344456665553
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.13 E-value=7.1 Score=29.59 Aligned_cols=84 Identities=13% Similarity=0.050 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 013010 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER---ALELFDDMNKKGCIP--NRVTYNSFIRYYSVVNEIDKA 341 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A 341 (451)
.+..+.+-|.+....|. ++..+--.+..++.++.+... ++.++.++.+.+ .| .....=.|--++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 44455555555554443 555555556666777776555 777888877763 23 223333455677888888888
Q ss_pred HHHHHHHHhcC
Q 013010 342 IEMMRKMQNLN 352 (451)
Q Consensus 342 ~~~~~~m~~~~ 352 (451)
.+.++.+.+..
T Consensus 94 ~~~~~~lL~~e 104 (126)
T 1nzn_A 94 LKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 88888888764
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.88 E-value=5.2 Score=28.87 Aligned_cols=48 Identities=8% Similarity=0.188 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 305 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
++.+-++.+....+.|++....+.+.+|.+.+++..|.++|+-.+.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 444455555555555666666666666666666666666665555443
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.02 E-value=24 Score=33.44 Aligned_cols=96 Identities=13% Similarity=0.162 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCC--hhh
Q 013010 291 NCLIDGCCKTYRIERALELFDDMNKK--GCIPN---RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN---HGVPT--SSS 360 (451)
Q Consensus 291 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p~--~~~ 360 (451)
..|...+...|++.+|.+++.++... |.... ...+...++.|...+++..|..++.++.... ...|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45777888899999999999987642 22111 3556777888999999999999998875321 10222 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 361 YTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 361 ~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
|...+..+...+++.+|.+.|.+..+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 56677777888999999888877753
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.72 E-value=11 Score=29.51 Aligned_cols=119 Identities=8% Similarity=0.014 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHh----hHHHHHHHH---HhcCCHHHHHHHHH
Q 013010 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV----AYNCLIDGC---CKTYRIERALELFD 311 (451)
Q Consensus 239 p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~---~~~g~~~~a~~~~~ 311 (451)
-|..+|-..+...-+.|++..- . -++...++|++.... ++|+.. .|--+.--| ...++.++|.++|+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d-~----~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSD-A----LLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQ 84 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCH-H----HHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchh-h----HHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3555666666666666644110 1 234555666655542 444421 111111111 12356666777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 013010 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366 (451)
Q Consensus 312 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 366 (451)
.+.+.+-.. ...|....+.-.+.|++++|.+++......+. -+.....+.|.
T Consensus 85 ~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~--k~~~~le~a~~ 136 (161)
T 4h7y_A 85 MARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA--VPLEMLEIALR 136 (161)
T ss_dssp HHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--BCHHHHHHHHH
T ss_pred HHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC--CcHHHHHHHHH
Confidence 665543333 44454444545566777777777766666552 23344444443
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.97 E-value=26 Score=33.09 Aligned_cols=97 Identities=12% Similarity=0.030 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc--CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHH---
Q 013010 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK--GFVPD---VVAYNCLIDGCCKTYRIERALELFDDMN--- 314 (451)
Q Consensus 243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~--- 314 (451)
....|...|...| ++.+|.+++.++... |.... ...+...+..|...+++..|..++....
T Consensus 139 l~~~La~i~e~~g-----------~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~ 207 (445)
T 4b4t_P 139 VTKDLVEIKKEEG-----------KIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT 207 (445)
T ss_dssp HHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 3456788888888 889999999888642 22111 3456777888999999999999998864
Q ss_pred -hCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 315 -KKGCIPN--RVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 315 -~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
.....|+ ..-|...+..+...+++.+|...|.+...
T Consensus 208 ~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 208 FKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2333333 34567777888889999999988887765
No 243
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=83.73 E-value=4.1 Score=36.47 Aligned_cols=95 Identities=14% Similarity=0.172 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013010 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR--VLEARDFLAELVDGGSVPREYTYKLVCDA 402 (451)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 402 (451)
.+.++.-|...|+.++|.+.++++..... -....+..+..++-+.++ .+.+.+++..+.+.|+-+.......+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f--~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~v 246 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHF--HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERI 246 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGG--HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcc--hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 46788888899999999999999853211 112344455555555443 45677889999888877666554444444
Q ss_pred HHhcCC----CchHHHHHHHHHH
Q 013010 403 LNAAEE----PSLLDDGLRKRIR 421 (451)
Q Consensus 403 ~~~~g~----~~~a~~~~~~~~~ 421 (451)
+....+ .-.|...+.+.+.
T Consensus 247 l~~l~Dl~lDiP~A~~~la~~v~ 269 (307)
T 2zu6_B 247 YNEIPDINLDVPHSYSVLERFVE 269 (307)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHhccHhhcccccHHHHHHHHHH
Confidence 433332 3335555555553
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.42 E-value=19 Score=36.55 Aligned_cols=113 Identities=9% Similarity=0.026 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHhh-H-HHHHHHHHhcCC-HHHHHHHHHHHHhC------CCCC-CHH----------HHHH
Q 013010 268 IWEANHLFRLMLFKGFVPDVVA-Y-NCLIDGCCKTYR-IERALELFDDMNKK------GCIP-NRV----------TYNS 327 (451)
Q Consensus 268 ~~~a~~~~~~m~~~~~~~~~~~-~-~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~p-~~~----------t~~~ 327 (451)
++.|..+|+++.+.. |...+ | .+++..+.+.++ --+|.+++.+..+. ...+ +.. ....
T Consensus 265 ~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~ 342 (754)
T 4gns_B 265 VDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI 342 (754)
T ss_dssp HHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence 678999999988763 33322 2 233333333332 22455555544321 1222 111 1111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010 328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384 (451)
Q Consensus 328 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 384 (451)
=...+...|+++.|+++-++..... +-+-.+|..|...|...|+++.|+-.++.+
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1334567899999999999998864 456779999999999999999999988877
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.19 E-value=7.3 Score=29.79 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~ 250 (451)
+.-+..+-++.+...++.|+.....+.+.+|-+.+++..|.++|+-.+.+- .+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~---~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA---GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---CCchhhHHHHHHH
Confidence 455667777777777888888888888888888888888888888877653 2444556655553
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.03 E-value=36 Score=35.48 Aligned_cols=121 Identities=9% Similarity=-0.101 Sum_probs=56.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC
Q 013010 296 GCCKTYRIERALELFDDMNKKGCIPNRVTYN--SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR 373 (451)
Q Consensus 296 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 373 (451)
++...|+.+.+..+++.+.... .|....-. ++.-+|+-.|+.....++++.+.... ..++.....+--++...|+
T Consensus 533 Gll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSS
T ss_pred HhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCC
Confidence 3445677777777777666531 22222222 22334556677666666777766532 2233322222223333455
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHH
Q 013010 374 VLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS-LLDDGLRKRI 420 (451)
Q Consensus 374 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~-~a~~~~~~~~ 420 (451)
.+.+.+++..+.+.+ .|...--.++.-+....|... .+.+.+..+.
T Consensus 610 ~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 610 YTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp CSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 444555554444332 233333333444444444432 2444555554
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.93 E-value=12 Score=28.66 Aligned_cols=59 Identities=12% Similarity=0.234 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365 (451)
Q Consensus 305 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 365 (451)
+..+-++.+....+.|++....+-+.+|.+.+++..|.++|+-.+.+. .+....|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHH
Confidence 444555555555666666666666666666666666666666666544 23344455554
No 248
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.80 E-value=13 Score=30.76 Aligned_cols=87 Identities=18% Similarity=0.143 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHhHH---HHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010 112 LNKATEFYHWVERFFDFFHNEMTCK---EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA 188 (451)
Q Consensus 112 ~~~A~~~f~~~~~~~~~~~~~~~~~---~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 188 (451)
+++++..|.... .+.-|..-.. ..+..+ .++....+.++|..|...|++.. .+.-|......+-..|++.+|
T Consensus 60 LErc~~~F~~~~---rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~-~AlfYe~wA~~lE~~g~~~~A 134 (202)
T 3esl_A 60 MERCLIYIQDME---TYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTK-LSLFYEEFSKLLENAQFFLEA 134 (202)
T ss_dssp HHHHHHHHTTCG---GGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTT-BHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcccc---cccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHH-HHHHHHHHHHHHHHcCCHHHH
Confidence 355555555433 3444544332 222222 14456788889988888887753 345677888888888999999
Q ss_pred HHHHHHHhhCCCCCC
Q 013010 189 LATFYRMKQFRCRPD 203 (451)
Q Consensus 189 ~~~~~~m~~~g~~p~ 203 (451)
.++|+.-.+.+-.|-
T Consensus 135 ~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 135 KVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHcCCccH
Confidence 999988888777773
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.40 E-value=37 Score=31.48 Aligned_cols=173 Identities=9% Similarity=-0.089 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCC---CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC
Q 013010 206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPP---DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG 282 (451)
Q Consensus 206 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p---~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~ 282 (451)
....|...|.+.|+.++..+++...+.-=.. -| .......+++.+....+.. ...++-..+.++......
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kak~~k~v~~l~~~~~~~~~~~------~~~~~~~~~~~~~a~~~~ 93 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSS-ISKAKAAKLVRSLVDMFLDMDAGT------GIEVQLCKDCIEWAKQEK 93 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGG-SCHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777665432110 01 2334556666666554221 013333444444433321
Q ss_pred CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C
Q 013010 283 FVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-----NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-V 355 (451)
Q Consensus 283 ~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~ 355 (451)
-.. ....=.-+...|...|++.+|.+++..+.+.=-.. -...|..-+..|...+++.++...+......... .
T Consensus 94 r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 94 RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence 000 00111257888999999999999998887631111 2345666778899999999999999877643211 1
Q ss_pred CChhhHHH--HHH--HHH-HcCCHHHHHHHHHHHH
Q 013010 356 PTSSSYTP--IIH--ALC-EAGRVLEARDFLAELV 385 (451)
Q Consensus 356 p~~~~~~~--li~--~~~-~~g~~~~A~~l~~~m~ 385 (451)
+++..... ... .+. ..+++..|...|-+..
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 33332221 112 234 6789999988876654
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=79.98 E-value=62 Score=33.81 Aligned_cols=248 Identities=11% Similarity=0.003 Sum_probs=131.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCC--CCC---ccHHhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHH--HH--
Q 013010 139 GIVFARGNNVKGLWDFLKDMSRRGN--GEL---VTTSSVTCLIKVLGEEGL-VNEALATFYRMKQFRCRPDVYA--YN-- 208 (451)
Q Consensus 139 l~~~~~~g~~~~a~~~~~~m~~~~~--~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~--~~-- 208 (451)
.-++...|..+++..++.......- ... .....-.++--+.+-.|. -+++.+.+..+... .+..+ ..
T Consensus 418 aLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~d---d~~~~~~~Aal 494 (963)
T 4ady_A 418 GLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYN---DSATSGEAAAL 494 (963)
T ss_dssp HHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHT---CCHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc---CCHHHHHHHHH
Confidence 3445566666678887776655321 000 011112233233333332 24555666555542 22221 12
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHh
Q 013010 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288 (451)
Q Consensus 209 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 288 (451)
++...++..|+-+....++..+.+... -++.-.-.+.-++.-.| +.+.+..+.+.+... -.|...
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~~---e~vrR~aalgLGll~~g-----------~~e~~~~li~~L~~~-~dp~vR 559 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQH---GNITRGLAVGLALINYG-----------RQELADDLITKMLAS-DESLLR 559 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTTT-----------CGGGGHHHHHHHHHC-SCHHHH
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHhhhCC-----------ChHHHHHHHHHHHhC-CCHHHH
Confidence 222334566887777888877765421 23333333333444666 445666666666653 122222
Q ss_pred hHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 013010 289 AYN--CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH 366 (451)
Q Consensus 289 ~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 366 (451)
--. ++.-+|+..|+.....+++..+.+.. ..+..-...+--++...|+.+.+.++++.+.+.+ .|.+..-.++.-
T Consensus 560 ygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalAL 636 (963)
T 4ady_A 560 YGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFAL 636 (963)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Confidence 222 33446778899888888999988752 2234434444445556777777788887776655 466655555555
Q ss_pred HHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCCc
Q 013010 367 ALCEAGRV-LEARDFLAELVDGGSVPREYTYKLVCDA--LNAAEEPS 410 (451)
Q Consensus 367 ~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~ 410 (451)
+....|.. .+|.+++..+.. .++..+-..-+-+ ..-.|..+
T Consensus 637 Gli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 637 GIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCT
T ss_pred HHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCcc
Confidence 66656654 678888888864 3454444333333 44444444
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.93 E-value=70 Score=34.43 Aligned_cols=53 Identities=15% Similarity=-0.035 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 013010 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM 230 (451)
Q Consensus 173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 230 (451)
..++..+...+..+.|.++..... -+....-.+..+|...|++++|...|.+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345556666677766666544332 34444445556778899999999999875
No 252
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=79.47 E-value=5.4 Score=31.44 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHHH
Q 013010 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR--VLEARDFLAELVDGGSVPREYT 395 (451)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t 395 (451)
.+.++.-|...|+.++|.+.++++.... .-.......+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~--f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG--GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3445566666666666666666653211 0112233333444444322 3445566666665555544433
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.95 E-value=22 Score=38.30 Aligned_cols=53 Identities=8% Similarity=-0.060 Sum_probs=34.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 013010 137 EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK 196 (451)
Q Consensus 137 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 196 (451)
.++..+...+..+.+.++...... +...--.+..+|...|++++|.+.|.+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-------DPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-------CcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 455556667777776665433211 22233456677888999999999998763
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.47 E-value=30 Score=32.53 Aligned_cols=119 Identities=10% Similarity=-0.059 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhhc-CCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHH
Q 013010 112 LNKATEFYHWVERF-FDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA 190 (451)
Q Consensus 112 ~~~A~~~f~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 190 (451)
+++-.+...+..+. .+-.--..+...+...|.+.|+++.|.+.+.++...-..+..-...+-.+|+.+...+++..|..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 44444444555442 12221234677899999999999999999999987644444456678889999999999999999
Q ss_pred HHHHHhh---CCCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHhhh
Q 013010 191 TFYRMKQ---FRCRPDVYA----YNVVINALCRVGNFNKARFLLEQMEL 232 (451)
Q Consensus 191 ~~~~m~~---~g~~p~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~ 232 (451)
.+.+... .+-.|+... |..+ .+...+++..|.+.|-+...
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl--~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGI--HCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHH--GGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHH--HHHHhChHHHHHHHHHHHhc
Confidence 9988754 232333221 2222 23346889998888877644
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.95 E-value=25 Score=33.08 Aligned_cols=100 Identities=10% Similarity=-0.061 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIP--NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII 365 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 365 (451)
.+...+...|++.|+++.|.+.|.++...-..+ -...+-.+|+.+...+++..+...+.+....-...++...-+.+-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 466778899999999999999999998753223 357788889999999999999999998765432223322222111
Q ss_pred ----HHHHHcCCHHHHHHHHHHHHhC
Q 013010 366 ----HALCEAGRVLEARDFLAELVDG 387 (451)
Q Consensus 366 ----~~~~~~g~~~~A~~l~~~m~~~ 387 (451)
..+...+++.+|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1133468899999988777643
No 256
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.02 E-value=29 Score=28.59 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 013010 335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393 (451)
Q Consensus 335 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 393 (451)
.+...++.++|..|...+++.--+..|......+...|++.+|.++|+.=++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 34466777888888877777667777777777777788888888888777777777753
No 257
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=76.56 E-value=7.5 Score=32.71 Aligned_cols=88 Identities=9% Similarity=0.020 Sum_probs=41.1
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHh
Q 013010 139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY--NVVINALCR 216 (451)
Q Consensus 139 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~ 216 (451)
+...++.|+.+.+..+++.+.+.+..+......-.+.+...+..|+.+- ++.+.+.|..++.... .+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4444566777777777766655553332111111223344445566543 3344444544432111 122333445
Q ss_pred cCChHHHHHHHHHh
Q 013010 217 VGNFNKARFLLEQM 230 (451)
Q Consensus 217 ~g~~~~a~~~~~~m 230 (451)
.|+.+.+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 66665555555543
No 258
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=76.07 E-value=13 Score=28.25 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHHH
Q 013010 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR--VLEARDFLAELVDGGSVPREYT 395 (451)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t 395 (451)
.+.++.-|...|+.++|.+.++++.... .-.......+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~--f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG--GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4556666777777777777777764211 1112233444444544432 3556667777766666555443
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.38 E-value=20 Score=25.77 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (451)
..++|..+-+-+...+. ...+--+-+..+.+.|++++|..+.+.+ +.||...|-+|-.. +.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 44555555555554432 1111112223455666666666555433 25666666555433 5566666666665
Q ss_pred HHHhcC
Q 013010 347 KMQNLN 352 (451)
Q Consensus 347 ~m~~~~ 352 (451)
++..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665555
No 260
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.87 E-value=25 Score=27.56 Aligned_cols=53 Identities=23% Similarity=0.284 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 013010 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202 (451)
Q Consensus 149 ~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 202 (451)
+.+.++|..|...|++.. .+.-|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~-~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTL-SSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 336667777766666542 33456666666666677777777777666665555
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.86 E-value=19 Score=25.83 Aligned_cols=78 Identities=13% Similarity=-0.022 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010 267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346 (451)
Q Consensus 267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 346 (451)
..++|..+-+-+...+. ...+--+-+..+.+.|++++|..+.+.+ +.||...|-+|-.. +.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCEW--HLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 34555555555554432 1111112223455666666665554332 35666666555433 5666666666665
Q ss_pred HHHhcC
Q 013010 347 KMQNLN 352 (451)
Q Consensus 347 ~m~~~~ 352 (451)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 665555
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=71.88 E-value=31 Score=26.32 Aligned_cols=70 Identities=10% Similarity=-0.046 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316 (451)
Q Consensus 239 p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 316 (451)
|+..|--.+..+++++.... +...+..++++..+.+-.-.....=-+.-++.+.|++++|.+..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~--------d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVN--------DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHH--------HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHH--------HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 55555555566666665443 55566666666665431111222333445666777777777777766654
No 263
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.93 E-value=29 Score=27.56 Aligned_cols=54 Identities=15% Similarity=0.060 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 013010 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203 (451)
Q Consensus 149 ~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 203 (451)
+.+.++|..|..+|++.. .+.-|......+-..|++.+|.++|..-.+.+-.|-
T Consensus 77 ~~p~~if~~L~~~~IG~~-~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVS-LAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 336666777776666542 233566666666666777777777777666665554
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.58 E-value=22 Score=25.58 Aligned_cols=78 Identities=13% Similarity=0.041 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 013010 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381 (451)
Q Consensus 302 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 381 (451)
..++|..|-+-+...|. ....--+=+..+.+.|++++|..+.+.+. -||...|-.|. -.+.|-.+++..-+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALC--EYRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHH--HHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHHHHH
Confidence 45666666666665543 12122222344566666666666654432 46666665553 23556666666655
Q ss_pred HHHHhCC
Q 013010 382 AELVDGG 388 (451)
Q Consensus 382 ~~m~~~g 388 (451)
.++..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 5555544
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.20 E-value=72 Score=29.50 Aligned_cols=170 Identities=10% Similarity=-0.015 Sum_probs=96.0
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcC--CCCCccHHhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHHH--
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRG--NGELVTTSSVTCLIKVLGEE-GLVNEALATFYRMKQFRCRPDVYAY-- 207 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~-- 207 (451)
.....|...|.+.|+.++..+++.....-- +.-..+......||..+... +..+.-.++..+..+..- -+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345568888889999988888887653321 11122455667777777664 344444444444433110 111222
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---CCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010 208 ----NVVINALCRVGNFNKARFLLEQMELPGFRCP---PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280 (451)
Q Consensus 208 ----~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~ 280 (451)
.-+...|...|++.+|.+++.++.+.--... --..+|-.-+..|...+ ++.++...+.....
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~-----------n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALS-----------NLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHh
Confidence 2567888889999999888888765311100 12345666777788888 56666666655432
Q ss_pred --cCCCCCHhhHHHH----HHHHH-hcCCHHHHHHHHHHHH
Q 013010 281 --KGFVPDVVAYNCL----IDGCC-KTYRIERALELFDDMN 314 (451)
Q Consensus 281 --~~~~~~~~~~~~l----i~~~~-~~g~~~~a~~~~~~m~ 314 (451)
..+.+++.+...+ -..+. ..+++..|...|-+..
T Consensus 168 ~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 168 TANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1222333222111 11234 6788888887776653
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.29 E-value=13 Score=32.31 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=74.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCChhhHHHHHHHHHHcCC
Q 013010 295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGR 373 (451)
Q Consensus 295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~ 373 (451)
....+.|.+++|.+....-.+.. +-|...=..|++-+|-.|+++.|..-++...+.... .|....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 45678899999999888877763 337778888999999999999999998888776421 1222344444432
Q ss_pred HHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHh--cCCCchHHHHHHHHH
Q 013010 374 VLEARDFLAELVDGGSVP-----REYTYKLVCDALNA--AEEPSLLDDGLRKRI 420 (451)
Q Consensus 374 ~~~A~~l~~~m~~~g~~p-----~~~t~~~li~~~~~--~g~~~~a~~~~~~~~ 420 (451)
...=.+....+-.| ...-...+++++.. .|+.+.|.+.-.+..
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~ 127 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 127 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 22223333333222 23456666776654 488887766666554
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=67.22 E-value=21 Score=25.59 Aligned_cols=78 Identities=14% Similarity=0.059 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 013010 302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381 (451)
Q Consensus 302 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 381 (451)
..++|..|-+-+...|. ....--+=+..+.+.|++++|..+.+.+. -||...|-.|. -.+.|-.+++..-+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHHHHH
Confidence 45566666665555542 11111222334556666666665543321 45555555543 23556556655555
Q ss_pred HHHHhCC
Q 013010 382 AELVDGG 388 (451)
Q Consensus 382 ~~m~~~g 388 (451)
.++..+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 5555444
No 268
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=66.76 E-value=5.4 Score=33.48 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=22.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCCchHHHH
Q 013010 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTY--KLVCDALNAAEEPSLLDDG 415 (451)
Q Consensus 364 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~a~~~ 415 (451)
.+...+..|+.+-+.- +.+.|..++.... .+-+....+.|+.+.+..+
T Consensus 180 ~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 229 (240)
T 3eu9_A 180 ALHWAVLAGNTTVISL----LLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229 (240)
T ss_dssp HHHHHHHHTCHHHHHH----HHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHH----HHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 3444556676654433 3344555542211 1234555666766644333
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.90 E-value=16 Score=31.41 Aligned_cols=218 Identities=11% Similarity=0.094 Sum_probs=97.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCcc-HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH--HHHHHHH
Q 013010 137 EMGIVFARGNNVKGLWDFLKDMSRRGNGELVT-TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA--YNVVINA 213 (451)
Q Consensus 137 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~ 213 (451)
+.+...++.|+++.+..+++ .|..+... ...-.+.+...+..|+.+- ++.+.+.|..++... -.+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHH
Confidence 45556677888776655554 34332111 1111234555566777654 444445555443211 1123344
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCC-CCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhh---
Q 013010 214 LCRVGNFNKARFLLEQMELPGFRC-PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA--- 289 (451)
Q Consensus 214 ~~~~g~~~~a~~~~~~m~~~g~~~-~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--- 289 (451)
.+..|+.+-+..+++ .|..+ ..+..-++. +...+..| +. ++++.+.+.|..++...
T Consensus 79 A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~-L~~A~~~~-----------~~----~~~~~Ll~~g~~~~~~~~~~ 138 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLS----KGADVNECDFYGFTA-FMEAAVYG-----------KV----KALKFLYKRGANVNLRRKTK 138 (285)
T ss_dssp HHHHTCHHHHHHHHH----TTCCTTCBCTTCCBH-HHHHHHTT-----------CH----HHHHHHHHTTCCTTCCCCCC
T ss_pred HHHcCCHHHHHHHHH----cCCCCCccCcccCCH-HHHHHHhC-----------CH----HHHHHHHHhCCCcccccccH
Confidence 455666655444443 34220 012222222 33334444 33 34444555565554321
Q ss_pred ---------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 013010 290 ---------YNCLIDGCCKTYRIERALELFDDMNKKGCIPN---RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT 357 (451)
Q Consensus 290 ---------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 357 (451)
-.+.+...+..|+.+-+..+++. .|..++ ....+.+..+ +..+......++.+.+.+.|. .++
T Consensus 139 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~-~~~ 213 (285)
T 1wdy_A 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGA-DVN 213 (285)
T ss_dssp HHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTC-CSS
T ss_pred HHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCC-CCC
Confidence 11334444556666544444332 144332 2233334333 344554444556666666654 333
Q ss_pred h---hhHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCC
Q 013010 358 S---SSYTPIIHALCEAGRVLEARDFLAELVD-GGSVPR 392 (451)
Q Consensus 358 ~---~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~ 392 (451)
. .-.+. +...++.|+.+-+. .+.+ .|..++
T Consensus 214 ~~~~~g~t~-L~~A~~~~~~~~v~----~Ll~~~g~~~~ 247 (285)
T 1wdy_A 214 VRGERGKTP-LILAVEKKHLGLVQ----RLLEQEHIEIN 247 (285)
T ss_dssp CCCTTSCCH-HHHHHHTTCHHHHH----HHHHSSSCCTT
T ss_pred CcCCCCCcH-HHHHHHcCCHHHHH----HHHhccCCCcc
Confidence 2 22333 34445566654433 3344 455554
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.31 E-value=23 Score=27.71 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 013010 340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393 (451)
Q Consensus 340 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 393 (451)
++.++|..|...+++.--+..|......+...|++.+|.++|..=++.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 367777777777776666667777777777777777777777777776666643
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.23 E-value=20 Score=31.16 Aligned_cols=55 Identities=24% Similarity=0.182 Sum_probs=31.9
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010 179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234 (451)
Q Consensus 179 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 234 (451)
..+.|++++|++....-.+.. +-|...-..++..+|-.|+++.|.+-++-..+..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 445566666666655555432 3355555566666666666666666666555443
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.14 E-value=27 Score=29.84 Aligned_cols=227 Identities=11% Similarity=0.031 Sum_probs=102.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHH
Q 013010 137 EMGIVFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV---YAYNVVIN 212 (451)
Q Consensus 137 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~ 212 (451)
+.+...+..|+.+-+..+ .+.|..+.. +..-. ..+...+..|+.+ +++.+.+.|..++. ..++ .+.
T Consensus 41 t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~ 110 (285)
T 1wdy_A 41 TPLHNAVQMSREDIVELL----LRHGADPVLRKKNGA-TPFLLAAIAGSVK----LLKLFLSKGADVNECDFYGFT-AFM 110 (285)
T ss_dssp CHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCC-CHHHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCB-HHH
T ss_pred cHHHHHHHcCCHHHHHHH----HHcCCCCcccCCCCC-CHHHHHHHcCCHH----HHHHHHHcCCCCCccCcccCC-HHH
Confidence 355555667777644444 445544321 22222 3344455667765 44455556655542 2223 344
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCCCHHHH-HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc-CCCCCH---
Q 013010 213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTY-TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPDV--- 287 (451)
Q Consensus 213 ~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~-~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~--- 287 (451)
..+..|+.+-+..+++ .|.. ++.... ..........|...-......++ .++++.+.+. |..++.
T Consensus 111 ~A~~~~~~~~~~~Ll~----~g~~--~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~ 180 (285)
T 1wdy_A 111 EAAVYGKVKALKFLYK----RGAN--VNLRRKTKEDQERLRKGGATALMDAAEKGH----VEVLKILLDEMGADVNACDN 180 (285)
T ss_dssp HHHHTTCHHHHHHHHH----TTCC--TTCCCCCCHHHHHTTCCCCCHHHHHHHHTC----HHHHHHHHHTSCCCTTCCCT
T ss_pred HHHHhCCHHHHHHHHH----hCCC--cccccccHHHHHhhccCCCcHHHHHHHcCC----HHHHHHHHHhcCCCCCccCC
Confidence 4556677655444443 3422 221000 00011111222111101111112 2344444544 554432
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCChhhHHH
Q 013010 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT--YNSFIRYYSVVNEIDKAIEMMRKMQNLNH--GVPTSSSYTP 363 (451)
Q Consensus 288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~p~~~~~~~ 363 (451)
...+.+.. .+..++.....++++.+.+.|..++... -...+...+..|+.+-+..+++. .|. ...|..-.+.
T Consensus 181 ~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~ 256 (285)
T 1wdy_A 181 MGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTA 256 (285)
T ss_dssp TSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCH
T ss_pred CCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcH
Confidence 22333333 4455666666777888888887765422 12334445567777665555542 232 1233444444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 013010 364 IIHALCEAGRVLEARDFLAELVDGGSVPR 392 (451)
Q Consensus 364 li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 392 (451)
+- ..++.|..+ +.+-+.+.|..|+
T Consensus 257 l~-~A~~~~~~~----i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 257 LL-LAVELKLKK----IAELLCKRGASTD 280 (285)
T ss_dssp HH-HHHHTTCHH----HHHHHHHHSSCSC
T ss_pred HH-HHHHcCcHH----HHHHHHHcCCCCC
Confidence 43 334455543 3344455566554
No 273
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=63.15 E-value=17 Score=28.97 Aligned_cols=24 Identities=4% Similarity=-0.140 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHH
Q 013010 395 TYKLVCDALNAAEEPSLLDDGLRK 418 (451)
Q Consensus 395 t~~~li~~~~~~g~~~~a~~~~~~ 418 (451)
.---+..+|.+.|++++|..+++.
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhc
Confidence 333478899999999988887763
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=62.59 E-value=88 Score=28.14 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHH
Q 013010 358 SSSYTPIIHALCEAGRVLEARDFL 381 (451)
Q Consensus 358 ~~~~~~li~~~~~~g~~~~A~~l~ 381 (451)
+.....+-..|.+.+++.+|...|
T Consensus 136 p~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 136 PELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHH
Confidence 334444555555666655555444
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=61.56 E-value=30 Score=28.79 Aligned_cols=54 Identities=11% Similarity=0.050 Sum_probs=31.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHH
Q 013010 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYA--YNVVINALCRVGNFNKARFLLE 228 (451)
Q Consensus 175 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~ 228 (451)
.+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 34556677888888888887776665544321 1233444556777655444443
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=60.70 E-value=19 Score=31.37 Aligned_cols=185 Identities=10% Similarity=0.036 Sum_probs=87.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CCCHHHHHHHHHHHHhc
Q 013010 176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC-PPDVYTYTILISSYCKY 254 (451)
Q Consensus 176 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~p~~~~~~~li~~~~~~ 254 (451)
+...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+..+++ .|..+ .++..-++. +...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t~-L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILLF----SGLDDSQFDDKGNTA-LYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH----TTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCcH-HHHHHHc
Confidence 34445567765554444 33433332222234444556677665555544 33220 112222223 3333445
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH-HHHHHHH
Q 013010 255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA---YNCLIDGCCKTYRIERALELFDDMNKKGCIP-NR-VTYNSFI 329 (451)
Q Consensus 255 g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~-~t~~~li 329 (451)
| +.+-+ +.+.+.|..++... +.+.+...+..|+.+-+ +.+.+.|..+ +. .-.+. +
T Consensus 106 g-----------~~~~v----~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~-L 165 (285)
T 3kea_A 106 G-----------NMQTV----KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSC-I 165 (285)
T ss_dssp T-----------CHHHH----HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHH-H
T ss_pred C-----------CHHHH----HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccH-H
Confidence 5 43333 33334454444322 23445555667776544 4444444333 22 23333 3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 013010 330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT 395 (451)
Q Consensus 330 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 395 (451)
...+..|+.+-+..+++.-.... ..+..-.+..+...+..|+. ++.+.+.+.|..|+...
T Consensus 166 ~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 166 HITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 44456788877777776543333 23333333333444455654 44555667788777654
No 277
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=60.50 E-value=70 Score=29.20 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=14.3
Q ss_pred HHHHHHHHHccCChhHHHHHHHHH
Q 013010 135 CKEMGIVFARGNNVKGLWDFLKDM 158 (451)
Q Consensus 135 ~~~ll~~~~~~g~~~~a~~~~~~m 158 (451)
...++.-|...|+.++|.+.++++
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 455555566666666666666555
No 278
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=60.32 E-value=54 Score=24.96 Aligned_cols=71 Identities=8% Similarity=-0.070 Sum_probs=46.2
Q ss_pred CCCHHhHHHHHHHHHccC---ChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 013010 129 FHNEMTCKEMGIVFARGN---NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203 (451)
Q Consensus 129 ~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 203 (451)
.|+..+-=.+.-++.++. +..++..+++++.+.+ +......+-.|.-++.+.|++++|.+..+.+.+ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 344444333555555555 4456777787777765 222455566777788888888888888888887 3565
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.96 E-value=31 Score=27.45 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 013010 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY 394 (451)
Q Consensus 339 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 394 (451)
+.+.++|..|...+++.--+..|......+-..|++.+|.++|..=++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 34677888888888877777788888888888888888888888888887777644
No 280
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=59.83 E-value=1.7e+02 Score=30.53 Aligned_cols=161 Identities=10% Similarity=0.018 Sum_probs=95.1
Q ss_pred HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG----FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320 (451)
Q Consensus 245 ~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 320 (451)
..++...|+.|..+ -.++|.+.|+.....+ +.||.. +.+...-.+.|..++-..+++......
T Consensus 690 ~~~l~~ac~~g~~~--------c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~--- 756 (909)
T 4fke_A 690 INAISTACSNGLPQ--------CENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ--- 756 (909)
T ss_dssp HHHHHHHHHTTCHH--------HHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHhccHH--------HHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---
Confidence 45677788888544 6678999998877532 556543 333344456687777777777777653
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC-HHHHHHHHHHHH---hCCCCCCHHHH
Q 013010 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR-VLEARDFLAELV---DGGSVPREYTY 396 (451)
Q Consensus 321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~---~~g~~p~~~t~ 396 (451)
+..--..++.+++...+.....++++....... ....... .++.+...... .+.|.+++.+=. ...+......+
T Consensus 757 ~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~-ir~qd~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~ 834 (909)
T 4fke_A 757 LVNEADKLRSALACSNEVWLLNRYLGYTLNPDL-IRKQDAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSF 834 (909)
T ss_dssp SHHHHHHHHHHHTTCCCHHHHHHHHHHTTCTTT-SCGGGHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCH
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCC-CchhhHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHH
Confidence 445557788999889999888888887765432 2222333 33444444322 345555554321 11222333456
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHH
Q 013010 397 KLVCDALNAAEEPSLLDDGLRKRI 420 (451)
Q Consensus 397 ~~li~~~~~~g~~~~a~~~~~~~~ 420 (451)
..++.+....-..+.-.+.+++..
T Consensus 835 ~~~i~~~~~~~~t~~~~~~~~~f~ 858 (909)
T 4fke_A 835 SNLIQGVTRRFSSEFELQQLEQFK 858 (909)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 667777666555544445555554
No 281
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=57.07 E-value=43 Score=26.67 Aligned_cols=95 Identities=6% Similarity=-0.128 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CC---
Q 013010 291 NCLIDGCCKTYRIERALELFDDMNKK-GCIPN-------RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG---VP--- 356 (451)
Q Consensus 291 ~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~p--- 356 (451)
-.-+..+...|.++.|+-+.+.+... +..|+ ..++..+.+++...|++..|...|++..+.... .+
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33455666777777777766654422 11222 235566677788888888888888874322110 01
Q ss_pred -----------------ChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010 357 -----------------TSSSYTPIIHALCEAGRVLEARDFLAELV 385 (451)
Q Consensus 357 -----------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 385 (451)
+...---+-.+|.+.+++++|+.+++...
T Consensus 104 ~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 104 PSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp -------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 11222235677888999999999887643
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.76 E-value=36 Score=28.60 Aligned_cols=53 Identities=11% Similarity=0.202 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 013010 149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202 (451)
Q Consensus 149 ~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 202 (451)
+.+..+|..|...|++.. .+.-|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~-~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQE-SSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455666666666665542 23356666666666666666666666666655555
No 283
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=56.71 E-value=66 Score=24.83 Aligned_cols=71 Identities=7% Similarity=-0.070 Sum_probs=50.4
Q ss_pred CCCHHhHHHHHHHHHccC---ChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 013010 129 FHNEMTCKEMGIVFARGN---NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD 203 (451)
Q Consensus 129 ~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 203 (451)
.|+..+--.+.-++.++. +..++..+++.+.+.+.. ......-.|.-++.+.|++++|.+..+.+.+ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 456665545666777666 455678888888876422 2445566777888999999999999999988 4565
No 284
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=56.52 E-value=1.7 Score=41.44 Aligned_cols=218 Identities=11% Similarity=0.050 Sum_probs=133.7
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 013010 130 HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV 209 (451)
Q Consensus 130 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 209 (451)
-|...|..++.+..+.|.+++-.+.+....+..-.|. +=+.|+-+|++.++..+-.+++ -.||..-...
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~----IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~ 149 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY----VETELIFALAKTNRLAELEEFI-------NGPNNAHIQQ 149 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT----TTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc----cHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHH
Confidence 3667788999999999999999998876665543333 3458999999999865433222 2477777778
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC-------------------CCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 013010 210 VINALCRVGNFNKARFLLEQMELPG-------------------FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270 (451)
Q Consensus 210 li~~~~~~g~~~~a~~~~~~m~~~g-------------------~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~ 270 (451)
+.+-|...|.++.|.-+|..+.... -+ .-++.||.-+-.+|...+. +.-
T Consensus 150 VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK-Ans~ktWKeV~~ACvd~~E-----------frL 217 (624)
T 3lvg_A 150 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK-ANSTRTWKEVCFACVDGKE-----------FRL 217 (624)
T ss_dssp HHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT-CCSSCSHHHHTHHHHHSCT-----------TTT
T ss_pred HHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh-cCChhHHHHHHHHHhCchH-----------HHH
Confidence 8888888999888888776653211 00 1356778888888888883 333
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 271 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
|.-.--.+.- ...-...++.-|-..|.+++.+.+++.-... -....-.|+-|--.|++- ++++..+-++..-.
T Consensus 218 AqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~s 290 (624)
T 3lvg_A 218 AQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWS 290 (624)
T ss_dssp TTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS
T ss_pred HHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 3222222221 1111223555567777777777777765422 123567777777777665 34444443332211
Q ss_pred cCCCCC-------ChhhHHHHHHHHHHcCCHHHHH
Q 013010 351 LNHGVP-------TSSSYTPIIHALCEAGRVLEAR 378 (451)
Q Consensus 351 ~~~~~p-------~~~~~~~li~~~~~~g~~~~A~ 378 (451)
+ +..| ....|.-++-.|++-.+++.|.
T Consensus 291 r-iNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 291 R-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp S-SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred h-ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 1 1012 3456777777777777776654
No 285
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=54.12 E-value=73 Score=24.57 Aligned_cols=70 Identities=10% Similarity=-0.046 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316 (451)
Q Consensus 239 p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 316 (451)
|+..+--.+..+++++.... +..++..++++....+-.-.....--|.-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~--------di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVN--------DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHH--------HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 55555555666666666443 55566666666655321111112222444666777777777777766665
No 286
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=51.15 E-value=2.3e+02 Score=29.49 Aligned_cols=24 Identities=13% Similarity=-0.078 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhh
Q 013010 208 NVVINALCRVGNFNKARFLLEQME 231 (451)
Q Consensus 208 ~~li~~~~~~g~~~~a~~~~~~m~ 231 (451)
..++.+++...+.+...++++...
T Consensus 762 ~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 762 DKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHh
Confidence 344444444444444444444443
No 287
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=51.00 E-value=24 Score=28.50 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=27.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 013010 332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393 (451)
Q Consensus 332 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 393 (451)
.+..|+.+-+..+++.-.. .....+..-.+.|..+.........-.++.+.+.+.|..++.
T Consensus 113 A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGRE-DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCC-CTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHcCCHHHHHHHHHcCCC-CcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 3445665554444433200 011234444445544443322233335556666677766653
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.80 E-value=56 Score=27.40 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 013010 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE 393 (451)
Q Consensus 339 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 393 (451)
+.+.++|..|...+++.--+..|......+...|++.+|.++|..=++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 5677888888888887777778888888888888888888888888777777743
No 289
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=46.59 E-value=2.7e+02 Score=28.94 Aligned_cols=143 Identities=13% Similarity=0.037 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc----CCCCCHhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 013010 244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK----GFVPDVVA--YNCLIDGCCKTYRIERALELFDDMNKKG 317 (451)
Q Consensus 244 ~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g 317 (451)
-..++...|+.|..+ -.++|.+.|++.... .++||... |... - |.-++-..+++.....
T Consensus 683 r~~~~~~ac~~g~~~--------c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~-----~-g~~~~~~~l~~~y~~~- 747 (897)
T 2xdt_A 683 RSQLLLLACVHNYQP--------CVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVG-----A-QSTEGWDFLYSKYQFS- 747 (897)
T ss_dssp HHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHH-----T-TSHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhcCCHH--------HHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEe-----c-CCHHHHHHHHHHHHcc-
Confidence 345677778888654 677899999887754 24555432 2222 1 6655555566666543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc-CCHHHHHHHHHH----HHhCCCCCC
Q 013010 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLEARDFLAE----LVDGGSVPR 392 (451)
Q Consensus 318 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~----m~~~g~~p~ 392 (451)
.+..--..++.+++...+.....++++....... ... .-...++.+.+.. .-.+.|.+++.+ +.+. +.++
T Consensus 748 --~~~~ek~~ll~aL~c~~~~~~l~~~L~~~~~~~~-i~~-qd~~~~~~~v~~n~~g~~~~~~~~~~n~~~i~~~-~~~~ 822 (897)
T 2xdt_A 748 --LSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDK-IKT-QEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELG 822 (897)
T ss_dssp --CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSS-SCG-GGHHHHHHHHHTSTTTHHHHHHHHHHTHHHHHHH-HCTT
T ss_pred --CCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCC-CcH-HHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHH-hCCC
Confidence 2455567889999999999999999988875432 222 2333444444432 223455555432 2221 1223
Q ss_pred HHHHHHHHHHHHhc
Q 013010 393 EYTYKLVCDALNAA 406 (451)
Q Consensus 393 ~~t~~~li~~~~~~ 406 (451)
..++..++......
T Consensus 823 ~~~~~~~i~~~~~~ 836 (897)
T 2xdt_A 823 SSSIAHMVMGTTNQ 836 (897)
T ss_dssp CHHHHHHHHHTTTT
T ss_pred chHHHHHHHHHHhc
Confidence 34556666655443
No 290
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.38 E-value=54 Score=26.97 Aligned_cols=53 Identities=2% Similarity=-0.011 Sum_probs=25.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010 329 IRYYSVVNEIDKAIEMMRKMQNLNHG--VPTSSSYTPIIHALCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 329 i~~~~~~g~~~~A~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 386 (451)
+...+..|+.+-+..+++. |.. ..+..-.+ .+....+.|+.+-+.-+++...+
T Consensus 181 L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t-~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEA----GANVDAQNIKGES-ALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHH----TCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHHhhhc
Confidence 4444566777655555443 331 22222222 33445666776666555554433
No 291
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=43.92 E-value=71 Score=26.20 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=9.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC
Q 013010 368 LCEAGRVLEARDFLAELVDGGSVPR 392 (451)
Q Consensus 368 ~~~~g~~~~A~~l~~~m~~~g~~p~ 392 (451)
.+..|+.+ +.+.+.+.|..++
T Consensus 179 A~~~~~~~----~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 179 ACDEERVE----EAKFLVTQGASIY 199 (231)
T ss_dssp HHHTTCHH----HHHHHHHTTCCSC
T ss_pred HHHCCCHH----HHHHHHHCCCCCC
Confidence 34555543 3333445555544
No 292
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=43.86 E-value=1.3e+02 Score=26.81 Aligned_cols=221 Identities=13% Similarity=0.113 Sum_probs=104.3
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 013010 130 HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN 208 (451)
Q Consensus 130 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 208 (451)
.|..-++.| ...+..|+.+-+..+++ .|..+.. +..-+ +.+...+..|+.+-+..+++ .|..++...-.
T Consensus 16 ~d~~g~t~L-~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~ 85 (364)
T 3ljn_A 16 SDDENMEKI-HVAARKGQTDEVRRLIE----TGVSPTIQNRFGC-TALHLACKFGCVDTAKYLAS----VGEVHSLWHGQ 85 (364)
T ss_dssp CCHHHHHHH-HHHHHHTCHHHHHHHHH----TTCCTTCCCTTCC-CHHHHHHHHCCHHHHHHHHH----HCCCCCCBTTB
T ss_pred cCCCCCCHH-HHHHHcCCHHHHHHHHH----cCCCccccCCCCC-cHHHHHHHcCCHHHHHHHHH----CCCCccccCCC
Confidence 355555544 44456788876666664 3433311 22222 34455566788765554444 34334332222
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCH--------------------HHHHHHHHHHHhcCCchhhhHHHHHHH
Q 013010 209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDV--------------------YTYTILISSYCKYGMQTGCRKAIRRRI 268 (451)
Q Consensus 209 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~--------------------~~~~~li~~~~~~g~~~~~~~~~~~~~ 268 (451)
+.+...+..|+.+-+..+++.-...|.. ++. .-.+.|. ..+..|. ..
T Consensus 86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~----------~~ 152 (364)
T 3ljn_A 86 KPIHLAVMANKTDLVVALVEGAKERGQM--PESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGP----------EY 152 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHHTCC--HHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCG----------GG
T ss_pred CHHHHHHHcCCHHHHHHHHHhccccCCC--HHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCC----------ch
Confidence 3444556778888887777775444421 221 0122333 3334440 01
Q ss_pred HHHHHHHHHHHhcCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC---CHHHHHHHHHHHHhcCCHHHH
Q 013010 269 WEANHLFRLMLFKGFVPDVV---AYNCLIDGCCKTYRIERALELFDDMNK-KGCIP---NRVTYNSFIRYYSVVNEIDKA 341 (451)
Q Consensus 269 ~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p---~~~t~~~li~~~~~~g~~~~A 341 (451)
.++++.+.+.|..++.. -.+ .+...+..|+.+-+..+++.-.. .+..+ |..-.+.|. ..+..|+.+-+
T Consensus 153 ---~~~v~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v 227 (364)
T 3ljn_A 153 ---LEMIKILVQLGASPTAKDKADET-PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVA 227 (364)
T ss_dssp ---HHHHHHHHHHTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHH
T ss_pred ---HHHHHHHHHcCCCCcccCCCCCC-HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHHH
Confidence 23344444445554432 233 33444567887766666554222 01001 122222333 34466776654
Q ss_pred HHHHHHHHhcCCC--CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 013010 342 IEMMRKMQNLNHG--VPTSSSYTPIIHALCEAGRVLEARDFLAE 383 (451)
Q Consensus 342 ~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 383 (451)
..++ +.|.. ..|..-.+.|. ..+..|..+-+.-+++.
T Consensus 228 ~~Ll----~~gad~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 228 MRFV----EMGIDVNMEDNEHTVPLY-LSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHH----TTTCCTTCCCTTSCCHHH-HHHHTCCHHHHHHHHHH
T ss_pred HHHH----HcCCCCCCCCCCCCCHHH-HHHHhChHHHHHHHHHc
Confidence 4444 34431 23333344443 34566777766666654
No 293
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.77 E-value=31 Score=31.20 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=14.2
Q ss_pred HHHHHHHHHccCChhHHHHHHHHH
Q 013010 135 CKEMGIVFARGNNVKGLWDFLKDM 158 (451)
Q Consensus 135 ~~~ll~~~~~~g~~~~a~~~~~~m 158 (451)
...++.-|...|+.++|.+.++++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 445555566666666666665554
No 294
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=42.41 E-value=46 Score=27.42 Aligned_cols=41 Identities=10% Similarity=-0.081 Sum_probs=19.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCCc
Q 013010 366 HALCEAGRVLEARDFLAELVDGGSVPREYT--YKLVCDALNAAEEPS 410 (451)
Q Consensus 366 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~ 410 (451)
...+..|+.+-+. .+.+.|..++... -.+-+...+..|+.+
T Consensus 144 ~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 186 (231)
T 3aji_A 144 HRAAAKGNLKMVH----ILLFYKASTNIQDTEGNTPLHLACDEERVE 186 (231)
T ss_dssp HHHHHHTCHHHHH----HHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHH----HHHhcCCCccccCCCCCCHHHHHHHCCCHH
Confidence 3344566655443 3445555544221 112344455666655
No 295
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=42.24 E-value=1.9e+02 Score=25.94 Aligned_cols=171 Identities=14% Similarity=0.055 Sum_probs=87.2
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH----HHHHHHHHhhCCCCCCHHHHH
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE----ALATFYRMKQFRCRPDVYAYN 208 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~ 208 (451)
.+|.++..-|.+.+++++|.+++..-.. .+.+.|+... |.-+++.+.+.++++|.....
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~-----------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~ 98 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQ-----------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRG 98 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH-----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3566677778888999988888644211 1222333332 333345555566777776666
Q ss_pred HHHHHHHhcCChH-HHHHHHHHh----hhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC
Q 013010 209 VVINALCRVGNFN-KARFLLEQM----ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283 (451)
Q Consensus 209 ~li~~~~~~g~~~-~a~~~~~~m----~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 283 (451)
.++..+.....-+ .-.++.+++ .+.|-.-.-|...-..+...|.+.+ ++.+|+..|- .|-
T Consensus 99 rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~-----------~~~~Ae~H~i----lg~ 163 (336)
T 3lpz_A 99 KLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEG-----------EFEAAEKHLV----LGT 163 (336)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTT-----------CHHHHHHHHT----TSC
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC-----------CHHHHHHHHH----hcC
Confidence 6666665443311 111122222 1111000124455566777777777 6777776662 232
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 284 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
.+...+|..++..+...+...++ +... ...+--|...+++..|..+++...+
T Consensus 164 ~~s~~~~a~mL~ew~~~~~~~e~--------------dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 164 KESPEVLARMEYEWYKQDESHTA--------------PLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp TTHHHHHHHHHHHHHHTSCGGGH--------------HHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCCccH--------------HHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33335565555444443321111 1111 2233345567788888777666553
No 296
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.85 E-value=46 Score=27.55 Aligned_cols=19 Identities=21% Similarity=0.143 Sum_probs=11.0
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 013010 368 LCEAGRVLEARDFLAELVD 386 (451)
Q Consensus 368 ~~~~g~~~~A~~l~~~m~~ 386 (451)
.+..|+...+.++.+.+.+
T Consensus 217 A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3455566666666666554
No 297
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=38.87 E-value=2.1e+02 Score=25.39 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=12.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHH
Q 013010 357 TSSSYTPIIHALCEAGRVLEARDF 380 (451)
Q Consensus 357 ~~~~~~~li~~~~~~g~~~~A~~l 380 (451)
++.....+-..|.+.|++.+|...
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHH
Confidence 344455555555555655555543
No 298
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=38.60 E-value=2.1e+02 Score=25.36 Aligned_cols=171 Identities=10% Similarity=0.052 Sum_probs=89.0
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH----HHHHHHHhhCCCCCCHHHHH
Q 013010 133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA----LATFYRMKQFRCRPDVYAYN 208 (451)
Q Consensus 133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~ 208 (451)
..|.++..-|.+.+++++|.+++..-.. .+.+.|+...| .-+.+.+.+.+++++.....
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~-----------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~ 96 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGAL-----------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVA 96 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3566777777778888888887644221 12333444333 33456666677788877777
Q ss_pred HHHHHHHhcCChH-HHHHHHHHh----hhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC
Q 013010 209 VVINALCRVGNFN-KARFLLEQM----ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF 283 (451)
Q Consensus 209 ~li~~~~~~g~~~-~a~~~~~~m----~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~ 283 (451)
.++..+.....-+ .-.++++++ .+.|-.-.-+......+...|.+.+ ++.+|+..|- .|-
T Consensus 97 rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~-----------~~~~A~~H~i----~~~ 161 (312)
T 2wpv_A 97 RLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGD-----------FVYEAERYFM----LGT 161 (312)
T ss_dssp HHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTT-----------CHHHHHHHHH----TSC
T ss_pred HHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcC-----------CHHHHHHHHH----hCC
Confidence 7776665532211 112222222 2222100125566677777777777 6666666553 111
Q ss_pred CCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010 284 VPDVVAYNCLIDGCCKT---YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 284 ~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 350 (451)
.-|...+..++.-+... |...++ +.. ....+--|...|++..|..+|+...+
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf-~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEF-FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHH-HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchH--------------HHH-HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11234444444444333 332222 111 12223345567888888888876653
No 299
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=37.91 E-value=1.5e+02 Score=23.60 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349 (451)
Q Consensus 270 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 349 (451)
.+..++..+.+.|.--|..--...+....+.|.+.. ..+-.++...|+.++ +....+..+......+.|..++..-.
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~-~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~Kk~ 127 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGP-KVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAEKLA 127 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCH-HHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccH-HHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 445556666666665555544555555554443322 456666777776432 22222221111122344555555432
Q ss_pred hcCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHH
Q 013010 350 NLNHGVPTSSSYTPIIHALCEAG-RVLEARDFLAEL 384 (451)
Q Consensus 350 ~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m 384 (451)
......++.....-++..+.+.| .++.+..+++.+
T Consensus 128 ~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 128 NRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 22110122223344444444554 344444444444
No 300
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.58 E-value=1.2e+02 Score=27.96 Aligned_cols=19 Identities=16% Similarity=-0.043 Sum_probs=9.8
Q ss_pred HHHHHHccCChhHHHHHHH
Q 013010 138 MGIVFARGNNVKGLWDFLK 156 (451)
Q Consensus 138 ll~~~~~~g~~~~a~~~~~ 156 (451)
.+...+..|+.+-+..+++
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 3444455666665544443
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.48 E-value=1.3e+02 Score=22.58 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHhhhCCC
Q 013010 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN--FNKARFLLEQMELPGF 235 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~ 235 (451)
.+.++.-|...|+.++|.+.++++....+ ....+...+..++-+.++ .+.+.+++..+...|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 45667777777777777777777653111 112333333333333321 2445555555555553
No 302
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.09 E-value=1.3e+02 Score=23.77 Aligned_cols=53 Identities=8% Similarity=0.002 Sum_probs=36.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 013010 298 CKTYRIERALELFDDMNKKGCIP--NRVTYNSFIR-Y-----YSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 298 ~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 350 (451)
...|++-+|.+++++.-...-.+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34588888888888877664445 4566667776 2 2346888888888877655
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.14 E-value=3e+02 Score=26.43 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCH--HHHH-HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010 204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV--YTYT-ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF 280 (451)
Q Consensus 204 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~--~~~~-~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~ 280 (451)
...+|.++..|...+.++.|.++.....-.... .++. .+|. -+...+.-.+ ++.+|.+.+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~-~sn~q~~rY~YY~GRI~a~q~-----------~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTD-VSSSLEARYFFYLSKINAIQL-----------DYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTT-SCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCccc-CCHHHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHH
Confidence 567899999999999999999999987532110 0121 2222 1233344444 88899888887664
Q ss_pred c
Q 013010 281 K 281 (451)
Q Consensus 281 ~ 281 (451)
.
T Consensus 299 k 299 (523)
T 4b4t_S 299 K 299 (523)
T ss_dssp S
T ss_pred h
Confidence 3
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.78 E-value=1.9e+02 Score=24.35 Aligned_cols=43 Identities=21% Similarity=0.137 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN 314 (451)
Q Consensus 269 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 314 (451)
.-+..+.+++.. ..+.......+..+.+.|+.++|.++|=+..
T Consensus 76 ~L~~~L~~~l~~---~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 76 AISSKLSQSILS---SNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHHHT---CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 345555555533 4456667777888999999999999886544
No 305
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.86 E-value=1.4e+02 Score=23.32 Aligned_cols=48 Identities=4% Similarity=-0.070 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 013010 113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRR 161 (451)
Q Consensus 113 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 161 (451)
+++++-+....+..|+..+..- ..++..+...+..-.|.++++.+.+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 3344444444443455554433 22445555555555666666666554
No 306
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.60 E-value=1.7e+02 Score=22.96 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHhhh
Q 013010 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRP--DVYAYNVVIN-A-----LCRVGNFNKARFLLEQMEL 232 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 232 (451)
|..-+..|- .|++-+|.+++++.-...-.+ +...|..||. . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444443 499999999999998765455 5566777776 2 2357999999999988754
No 307
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.57 E-value=1.7e+02 Score=22.74 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 013010 171 SVTCLIKVLGEEGLVNEALATFYRMK 196 (451)
Q Consensus 171 ~~~~li~~~~~~g~~~~A~~~~~~m~ 196 (451)
..+.+|.-|...|+.++|.+.++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34566666777777777777777765
No 308
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=32.60 E-value=1.2e+02 Score=26.73 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=7.2
Q ss_pred HHHhcCChHHHHHHH
Q 013010 213 ALCRVGNFNKARFLL 227 (451)
Q Consensus 213 ~~~~~g~~~~a~~~~ 227 (451)
..+..|..+.+..++
T Consensus 245 ~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 245 LAVEKKHLGLVQRLL 259 (337)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHhhhhHHHHHHH
Confidence 344555555444443
No 309
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=31.05 E-value=1.4e+02 Score=21.18 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH-----HhCCCCCCHHHHHHH
Q 013010 270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDM-----NKKGCIPNRVTYNSF 328 (451)
Q Consensus 270 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~g~~p~~~t~~~l 328 (451)
.|.++.+++...|+.|+..+...++..|...+- + +.++..+. -..|..|+..+.+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 466777777778888888888888887776664 2 33333332 234777777766654
No 310
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.41 E-value=1.1e+02 Score=20.39 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=22.2
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 013010 365 IHALCEAG-RVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEE 408 (451)
Q Consensus 365 i~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 408 (451)
+..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-
T Consensus 23 L~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 23 LEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34443332 334455555555555544555555555555555554
No 311
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=30.19 E-value=42 Score=21.37 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHH-HhcCC
Q 013010 269 WEANHLFRLMLFKGFVPDVVAYNCLIDGC-CKTYR 302 (451)
Q Consensus 269 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~ 302 (451)
++|++.|.+|.+..-.+..-||...|..+ ++-.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPr 37 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPR 37 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCc
Confidence 46777777776544444556777777777 55443
No 312
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.08 E-value=2.5e+02 Score=23.64 Aligned_cols=89 Identities=11% Similarity=-0.048 Sum_probs=54.3
Q ss_pred HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh--cCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010 247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF--KGFVP----DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320 (451)
Q Consensus 247 li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~--~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 320 (451)
-++.+.... ++++|.+++++..+ .+++. +.......+..-.....-.-+..+.+++.. .+
T Consensus 24 eLDv~IA~r-----------~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~ 89 (235)
T 2d2s_A 24 EIDIELARL-----------RFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SN 89 (235)
T ss_dssp HHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CS
T ss_pred HHHHHHHHH-----------hHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC
Confidence 356666666 77777777766543 12221 112223334444444444555666666633 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010 321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349 (451)
Q Consensus 321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 349 (451)
+...-...+..+.+.|+.++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 66777778889999999999999996644
No 313
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.77 E-value=17 Score=30.98 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=15.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCC
Q 013010 211 INALCRVGNFNKARFLLEQMELPGF 235 (451)
Q Consensus 211 i~~~~~~g~~~~a~~~~~~m~~~g~ 235 (451)
+...++.|+.+....+++.+.+.|.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~ 33 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKK 33 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 3345567777777777776655553
No 314
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=29.44 E-value=91 Score=28.79 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=38.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHH
Q 013010 138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVY--AYNVVINALC 215 (451)
Q Consensus 138 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~ 215 (451)
.+...+..|+.+-+..+++ .|..+..........+...+..|+.+-+..+++. |..++.. .-.+.+...+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCCCHHHHHH
Confidence 3444556777775555554 3433221111122344555666776655555443 3322211 1112344445
Q ss_pred hcCChHHHHHHHHH
Q 013010 216 RVGNFNKARFLLEQ 229 (451)
Q Consensus 216 ~~g~~~~a~~~~~~ 229 (451)
..|+.+-+.-+++.
T Consensus 89 ~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 89 RIGHTNMVKLLLEN 102 (437)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhC
Confidence 66766655555443
No 315
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=29.06 E-value=5.1e+02 Score=26.90 Aligned_cols=140 Identities=14% Similarity=0.070 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHHhhhCCC--CCCCCHHH--HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010 207 YNVVINALCRVGN---FNKARFLLEQMELPGF--RCPPDVYT--YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML 279 (451)
Q Consensus 207 ~~~li~~~~~~g~---~~~a~~~~~~m~~~g~--~~~p~~~~--~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~ 279 (451)
-..++...|+.|+ .+.|.+.|++....+. .++||... |..-+ | .-++-..+++...
T Consensus 683 r~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~------g-----------~~~~~~~l~~~y~ 745 (897)
T 2xdt_A 683 RSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA------Q-----------STEGWDFLYSKYQ 745 (897)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT------T-----------SHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec------C-----------CHHHHHHHHHHHH
Confidence 4556777888888 4678888888765532 24566542 22221 4 2233333444444
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH-hcCCHHHHHHHHH----HHHhcCC
Q 013010 280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG-CIPNRVTYNSFIRYYS-VVNEIDKAIEMMR----KMQNLNH 353 (451)
Q Consensus 280 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~-~~g~~~~A~~~~~----~m~~~~~ 353 (451)
.. .+..--+.++.+++...+.....++++.....+ +++. .... ++.+.+ +....+.|++.+. .+.+.-
T Consensus 746 ~~---~~~~ek~~ll~aL~c~~~~~~l~~~L~~~~~~~~i~~q-d~~~-~~~~v~~n~~g~~~~~~~~~~n~~~i~~~~- 819 (897)
T 2xdt_A 746 FS---LSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQ-EFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQKF- 819 (897)
T ss_dssp TC---CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSSSCGG-GHHH-HHHHHHTSTTTHHHHHHHHHHTHHHHHHHH-
T ss_pred cc---CCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCcHH-HHHH-HHHHHHcChhhHHHHHHHHHHHHHHHHHHh-
Confidence 32 244445778999999999999999998877543 4432 2222 333333 2233455555554 233321
Q ss_pred CCCChhhHHHHHHHHHH
Q 013010 354 GVPTSSSYTPIIHALCE 370 (451)
Q Consensus 354 ~~p~~~~~~~li~~~~~ 370 (451)
.++..++..++.....
T Consensus 820 -~~~~~~~~~~i~~~~~ 835 (897)
T 2xdt_A 820 -ELGSSSIAHMVMGTTN 835 (897)
T ss_dssp -CTTCHHHHHHHHHTTT
T ss_pred -CCCchHHHHHHHHHHh
Confidence 1233456666666544
No 316
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.68 E-value=4e+02 Score=25.58 Aligned_cols=66 Identities=8% Similarity=0.098 Sum_probs=45.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH--HHHHH-HHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010 287 VVAYNCLIDGCCKTYRIERALELFDDMNKKG-CIPNR--VTYNS-FIRYYSVVNEIDKAIEMMRKMQNLN 352 (451)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~--~t~~~-li~~~~~~g~~~~A~~~~~~m~~~~ 352 (451)
...+|.++..|...+.++.|..+.....--. ..++. .+|.. +-..+.-.+++.+|.+.+.......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4568899999999999999999999875211 01121 33332 2234556789999999999887654
No 317
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=28.31 E-value=44 Score=26.56 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010 172 VTCLIKVLGEEGLVNEALATFYRMKQ 197 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~m~~ 197 (451)
...+|.-|...|+.++|...++++..
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 45677777778888888888888764
No 318
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=28.21 E-value=2.3e+02 Score=22.72 Aligned_cols=55 Identities=5% Similarity=-0.086 Sum_probs=39.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCC----------------C-HHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 013010 178 VLGEEGLVNEALATFYRMKQFRCRP----------------D-VYAYNVVINALCRVGNFNKARFLLEQMEL 232 (451)
Q Consensus 178 ~~~~~g~~~~A~~~~~~m~~~g~~p----------------~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 232 (451)
+|-+..++..|+..++.+....+.. | ...|+.+...|...|+.++|...|..--.
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 4666788888888888877544331 2 24567777888899999999999876543
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.99 E-value=1.7e+02 Score=22.28 Aligned_cols=38 Identities=8% Similarity=-0.094 Sum_probs=16.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 013010 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (451)
Q Consensus 181 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 218 (451)
..+..-.|.++++.+.+.+...+..|.--.|+.+...|
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33334444455555544433334444333344444443
No 320
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.36 E-value=2.6e+02 Score=22.94 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=18.5
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 217 ~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
..+.+.|+-++.+|.+.| . |.-..=..++.+.-..|
T Consensus 27 GSDpDAAly~LaRml~~G-D--p~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-D--LASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-C--HHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHHhhcc
Confidence 455666666666666665 4 44444444444444444
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.91 E-value=1.7e+02 Score=22.46 Aligned_cols=42 Identities=14% Similarity=0.055 Sum_probs=16.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 013010 177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (451)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 218 (451)
..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|
T Consensus 34 ~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 34 SVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333333334444444444444333333333333334444433
No 322
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.25 E-value=2.7e+02 Score=22.77 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=18.9
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010 217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG 255 (451)
Q Consensus 217 ~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g 255 (451)
..+.|.|+-++.+|.+.|-. |.-..=..++.+.-..|
T Consensus 20 GSDpDAAly~LaRMl~~GED--p~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGD--PLYVARRLLAIASEDVG 56 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHhhcc
Confidence 45566666666666666633 44333334444444333
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.17 E-value=77 Score=23.78 Aligned_cols=46 Identities=15% Similarity=0.018 Sum_probs=24.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Q 013010 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409 (451)
Q Consensus 364 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 409 (451)
++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 3444444444555666666666655555555544445566655543
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.97 E-value=1.7e+02 Score=20.51 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010 344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423 (451)
Q Consensus 344 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g 423 (451)
+++.+.+.+ ..+......+-. .......+.|.++++.+...|-. .|..+++++...|... +.+.+..--..|
T Consensus 26 vld~L~~~~--vlt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~-La~lL~~~~~~~ 97 (97)
T 3ygs_P 26 LWDVLLSRE--LFRPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDM-LASFLRTNRQAG 97 (97)
T ss_dssp THHHHHHTT--SSCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHH-HHHHHHHHHHCC
T ss_pred HHHHHHHcC--CCCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHH-HHHHHcccCCCC
No 325
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=25.57 E-value=3.3e+02 Score=23.59 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=9.6
Q ss_pred HHHHccCChhHHHHHHH
Q 013010 140 IVFARGNNVKGLWDFLK 156 (451)
Q Consensus 140 ~~~~~~g~~~~a~~~~~ 156 (451)
...++.|+.+.+..++.
T Consensus 29 ~~A~~~g~~~~v~~ll~ 45 (351)
T 3utm_A 29 LEAARSGNEEKLMALLT 45 (351)
T ss_dssp HHHHHHTCHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33345666666666654
No 326
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.43 E-value=1.2e+02 Score=19.73 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q 013010 325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE 370 (451)
Q Consensus 325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 370 (451)
++-+++.++.-.-+++++..+++..+.| ..+...|---++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g--~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG--TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 3444444444444555555555555554 3444444444444444
No 327
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.25 E-value=3.7e+02 Score=23.99 Aligned_cols=148 Identities=14% Similarity=0.019 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010 172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTILISS 250 (451)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~ 250 (451)
...++.-|...|+.++|...++++...... ...+...+..++-+. ...+.+.+++..+.+.|+- + -..+..|
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i---s---~~~~~~G 86 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL---S---TAQYYQG 86 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS---C---HHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC---C---HHHHHHH
Confidence 567888888899999999988888642211 112222222222211 1123455555555555431 1 1122222
Q ss_pred HHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh-cCCHHH---HHHHHHHHHhCCCCCCHHHHH
Q 013010 251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK-TYRIER---ALELFDDMNKKGCIPNRVTYN 326 (451)
Q Consensus 251 ~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~---a~~~~~~m~~~g~~p~~~t~~ 326 (451)
+. ...+.+..+.-. .|....+-+-+-+.+- .|-... ...+.+.+.+.|. ......
T Consensus 87 f~-----------------~~~~~l~Dl~lD--iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~--~~~fl~ 145 (339)
T 1ug3_A 87 LY-----------------EILELAEDMEID--IPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK--AASLLL 145 (339)
T ss_dssp HH-----------------HHHHHHHHHTTT--CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC--HHHHHH
T ss_pred HH-----------------HHHhhChHhhcC--ccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch--HHHHHH
Confidence 22 222222222211 3555554444333333 333221 1223333344442 345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 013010 327 SFIRYYSVVNEIDKAIEMMRK 347 (451)
Q Consensus 327 ~li~~~~~~g~~~~A~~~~~~ 347 (451)
.++..+.+....+.+.++|.+
T Consensus 146 ~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 146 EILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHH
Confidence 677778888888888888874
No 328
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=25.18 E-value=2.4e+02 Score=22.53 Aligned_cols=50 Identities=6% Similarity=0.064 Sum_probs=21.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHH
Q 013010 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY--NVVINALCRVGNFNKARFLLE 228 (451)
Q Consensus 175 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~ 228 (451)
.+...+..|+.+-+..++ +.|..++.... .+.+...+..|+.+-+..+++
T Consensus 28 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 28 ALHLAARYSRSDAAKRLL----EASADANIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 344445566654443333 34443332111 123333455666555544443
No 329
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=24.57 E-value=3.8e+02 Score=24.24 Aligned_cols=26 Identities=15% Similarity=0.411 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhh
Q 013010 207 YNVVINALCRVGNFNKARFLLEQMEL 232 (451)
Q Consensus 207 ~~~li~~~~~~g~~~~a~~~~~~m~~ 232 (451)
.+.+|.-|...|+.++|.+.++++..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~ 245 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV 245 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC
Confidence 35556666666666666666666653
No 330
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.10 E-value=2.2e+02 Score=21.82 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=20.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Q 013010 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409 (451)
Q Consensus 365 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 409 (451)
+..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-.
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 333444444445555555555444444444444444555555533
No 331
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.79 E-value=2.9e+02 Score=22.29 Aligned_cols=183 Identities=12% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCCHHHHHHHHHHH
Q 013010 139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR----CRPDVYAYNVVINAL 214 (451)
Q Consensus 139 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~ 214 (451)
+...++.|+.+.+..+++. .|..+......-.+.+...+..|+.+-+..+++.-.... -..|..-++.+..++
T Consensus 7 L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~ 83 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAV 83 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHH
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCCCH----------------HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 013010 215 CRVGNFNKARFLLEQMELPGFRCPPDV----------------YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278 (451)
Q Consensus 215 ~~~g~~~~a~~~~~~m~~~g~~~~p~~----------------~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m 278 (451)
.... .++++.+.+.|.. ++. .-.+.|..+..... .++++.+
T Consensus 84 ~~~~-----~~~v~~Ll~~g~~--~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~----------------~~~v~~L 140 (232)
T 2rfa_A 84 INQN-----VNLVRALLARGAS--VSARATGSVFHYRPHNLIYYGEHPLSFAACVGS----------------EEIVRLL 140 (232)
T ss_dssp HTTC-----HHHHHHHHHTTCC--TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTC----------------HHHHHHH
T ss_pred HcCC-----HHHHHHHHhCCCC--CCcccCCcceeecccccccCCCCHHHHHHHcCC----------------HHHHHHH
Q ss_pred HhcCCCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013010 279 LFKGFVPDVVAYN--CLIDGCCKTYRIERALELFDDMNKKGCIPN--------RVTYNSFIRYYSVVNEIDKAIEMMRK 347 (451)
Q Consensus 279 ~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------~~t~~~li~~~~~~g~~~~A~~~~~~ 347 (451)
.+.|..++..... +.+...+..|+.+-+..+++.+.+.|..++ ...-..-+...+..|+.+-+..+++.
T Consensus 141 l~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 141 IEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
No 332
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.66 E-value=1.7e+02 Score=19.47 Aligned_cols=58 Identities=9% Similarity=0.022 Sum_probs=26.4
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 013010 278 MLFKGFVPDVVAYNCLIDGCCKTY-RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336 (451)
Q Consensus 278 m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 336 (451)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|.-..+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344555544332 23344444332 33445555555555544444455444444444443
No 333
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.65 E-value=1.7e+02 Score=23.03 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=5.8
Q ss_pred HccCChhHHHHHH
Q 013010 143 ARGNNVKGLWDFL 155 (451)
Q Consensus 143 ~~~g~~~~a~~~~ 155 (451)
+..|+.+.+..++
T Consensus 13 ~~~g~~~~v~~ll 25 (201)
T 3hra_A 13 ANQRDTKKVKEIL 25 (201)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 3344544444443
No 334
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.39 E-value=1.6e+02 Score=25.34 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=5.4
Q ss_pred HhcCCHHHHHHHH
Q 013010 298 CKTYRIERALELF 310 (451)
Q Consensus 298 ~~~g~~~~a~~~~ 310 (451)
+..|+.+-+.-++
T Consensus 169 ~~~g~~~~v~~Ll 181 (285)
T 3kea_A 169 IKNGHVDMMILLL 181 (285)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcChHHHHHHHH
Confidence 3444444433333
No 335
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.26 E-value=73 Score=24.28 Aligned_cols=45 Identities=22% Similarity=0.098 Sum_probs=21.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Q 013010 365 IHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409 (451)
Q Consensus 365 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 409 (451)
+..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-.
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 333434444445555555555554444544444444555555533
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.16 E-value=1.8e+02 Score=21.83 Aligned_cols=35 Identities=9% Similarity=-0.020 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 013010 184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (451)
Q Consensus 184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 218 (451)
..-.|.++++.+.+.+...+..|.---|+.+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555544443334444333344444443
No 337
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.75 E-value=1.5e+02 Score=18.73 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=12.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC
Q 013010 371 AGRVLEARDFLAELVDGGSVPR 392 (451)
Q Consensus 371 ~g~~~~A~~l~~~m~~~g~~p~ 392 (451)
.|+++.|+..+-+|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 4566666666666655554443
No 338
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.60 E-value=1.4e+02 Score=23.44 Aligned_cols=20 Identities=0% Similarity=-0.081 Sum_probs=8.4
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 013010 331 YYSVVNEIDKAIEMMRKMQN 350 (451)
Q Consensus 331 ~~~~~g~~~~A~~~~~~m~~ 350 (451)
.+...+..-.|.++++.+.+
T Consensus 41 ~L~~~~~h~sA~eI~~~l~~ 60 (162)
T 4ets_A 41 TLYHSDTHYTPESLYMEIKQ 60 (162)
T ss_dssp HHHSCCSCBCHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHh
Confidence 33333333444444444443
No 339
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.91 E-value=98 Score=23.37 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhc
Q 013010 338 IDKAIEMMRKMQNL 351 (451)
Q Consensus 338 ~~~A~~~~~~m~~~ 351 (451)
.-.|.++++.+.+.
T Consensus 34 ~~sa~ei~~~l~~~ 47 (136)
T 1mzb_A 34 HMSAEDVYKALMEA 47 (136)
T ss_dssp SBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhh
Confidence 33444555544443
No 340
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.71 E-value=1.6e+02 Score=22.46 Aligned_cols=33 Identities=6% Similarity=0.050 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 013010 186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVG 218 (451)
Q Consensus 186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 218 (451)
-.|.++++.+.+.+...+..|.---|+.+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344455555544443334333333334444433
No 341
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.26 E-value=2.9e+02 Score=20.95 Aligned_cols=58 Identities=9% Similarity=0.026 Sum_probs=27.0
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 013010 278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN 336 (451)
Q Consensus 278 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 336 (451)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34455554432 22334444444444456666666655544444444444444444443
Done!