BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013011
(451 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M158|STR4_ARATH Rhodanese-like domain-containing protein 4, chloroplastic
OS=Arabidopsis thaliana GN=STR4 PE=1 SV=2
Length = 466
Score = 472 bits (1215), Expect = e-132, Method: Compositional matrix adjust.
Identities = 256/375 (68%), Positives = 296/375 (78%), Gaps = 12/375 (3%)
Query: 1 MEALNPAGLIPLSVLCDRRSEPRKIQSLSTASLPKLATSASNKTTQQNFLECFAKSVHGG 60
MEAL A P+SVL ++RSEPRK SLP L S + Q E F K +GG
Sbjct: 1 MEALKTATFSPMSVLSEKRSEPRK-----PFSLPNLFPPKSQRPISQ---ESFLKRFNGG 52
Query: 61 LVLLSSVL--GTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVT 118
L LL+SVL T A++LTYEEALQQS +S+S D+ G I+ + +F T+NPL IAGGV
Sbjct: 53 LALLTSVLSSATAPAKSLTYEEALQQSMTTSSS-FDSDGLIEGISNFVTDNPLVIAGGVA 111
Query: 119 ILAVPLVLSQVLNK-PKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLG 177
LAVP VLSQVLNK PKSWGVESA+NAY KLG D +AQLLDIRA +FRQVGSP+++GLG
Sbjct: 112 ALAVPFVLSQVLNKKPKSWGVESAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLG 171
Query: 178 KRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTI 237
K+ VS VY G+DKPGFLKKLSLKFK+PENTTL+ILDKFDGNSELVAELV +NGFK+AY I
Sbjct: 172 KKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAI 231
Query: 238 KDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLAIAAAAGLGV 297
KDGAEGPRGW+NS LPWI PKK L LDLS+LT++ISG GE S+G SV L +AAAAGL V
Sbjct: 232 KDGAEGPRGWLNSSLPWIEPKKTLSLDLSSLTDSISGVFGESSDGVSVALGVAAAAGLSV 291
Query: 298 LAFSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIG 357
AF+EIETILQ+LGSAALVQ A KKLLFAEDRKQTL+QVDEFLNTKVAPKEL D++K+IG
Sbjct: 292 FAFTEIETILQLLGSAALVQLAGKKLLFAEDRKQTLKQVDEFLNTKVAPKELVDELKEIG 351
Query: 358 KTLLPSPANGKALPA 372
K LLP + KALPA
Sbjct: 352 KALLPQSTSNKALPA 366
>sp|Q56XR7|STR4A_ARATH Rhodanese-like domain-containing protein 4A, chloroplastic
OS=Arabidopsis thaliana GN=STR4A PE=2 SV=1
Length = 264
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 2/173 (1%)
Query: 85 SAGSSASDVDASGFIDSVISFGTENPLAIAGGVTILAVPLVLSQVLNKPKSWGVESARNA 144
S+ S+ +D + ++ +F + P +AG V V V+ + + SA NA
Sbjct: 69 SSDPSSGKIDLESILVTIDNFFNKYPFFVAGCTFTYLV--VYPAVMFYLRKYKPISAMNA 126
Query: 145 YAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEP 204
+ KL +++ +QLLDIR + SP+++ LGK V + + +D+ GFL K+ F +
Sbjct: 127 FRKLKNESDSQLLDIRDVKTLALLASPNLKFLGKSSVQVPFSENDEEGFLTKVKGSFSDA 186
Query: 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257
ENT + +LD FDGNS VAEL+ NGFK AY I+ GA G GW+ +PP
Sbjct: 187 ENTVVCVLDNFDGNSSKVAELLIKNGFKEAYYIRGGARGKNGWLAIQEELLPP 239
>sp|Q9AKI4|Y600_RICRI Uncharacterized protein RP600 homolog OS=Rickettsia rickettsii PE=4
SV=1
Length = 123
Score = 50.4 bits (119), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP-VSIVYKGDDKPGFLKKLSLKFK 202
AY L + +A L+D+R E++QVG P + K +S D + FL ++ K
Sbjct: 11 AYDMLISNDNAFLVDVRTREEWQQVGIPHLDNKNKMLFLSWQLNKDFEDNFLSIINDKI- 69
Query: 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEG---PRGWMNSGLPW 254
+ +F L + S + A +T G+KN Y I DG EG +GW + LPW
Sbjct: 70 ---HAIIFFLCRSGYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNLPW 121
>sp|Q9ZCV8|Y600_RICPR Uncharacterized protein RP600 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP600 PE=4 SV=1
Length = 123
Score = 50.1 bits (118), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP-VSIVYKGDDKPGFLKKLSLKFK 202
AY L + +A L+D+R E++QVG P + K +S+ + + FL ++ K
Sbjct: 11 AYNMLILNNNAFLVDVRTQEEWKQVGIPHLDNKNKVIFLSLQLNKNFEDNFLSIINEKI- 69
Query: 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEG---PRGWMNSGLPW 254
+T +F L + S + A + G+KN Y I DG EG +GW + LPW
Sbjct: 70 ---DTAIFFLCRSGYRSFIAANFIANIGYKNCYNISDGFEGNNQDKGWKQNNLPW 121
>sp|P0A3K3|YDNAA_RICMO Uncharacterized protein in dnaA 5'region OS=Rickettsia montana PE=4
SV=1
Length = 123
Score = 49.7 bits (117), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP-VSIVYKGDDKPGFLKKLSLKFK 202
AY L + +A L+D+R E++QVG P + K +S D + FL ++ K
Sbjct: 11 AYDMLISNDNAFLVDVRTREEWQQVGIPHLDNKNKVIFLSWQLNKDFEDNFLSIVNDKI- 69
Query: 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEG---PRGWMNSGLPW 254
+ +F L + S + A +T G+KN Y I DG EG +GW + LPW
Sbjct: 70 ---HAIIFFLCRSGYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNLPW 121
>sp|P0A3K2|Y915_RICCN Uncharacterized protein RC0915 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=RC0915 PE=4 SV=1
Length = 123
Score = 49.7 bits (117), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP-VSIVYKGDDKPGFLKKLSLKFK 202
AY L + +A L+D+R E++QVG P + K +S D + FL ++ K
Sbjct: 11 AYDMLISNDNAFLVDVRTREEWQQVGIPHLDNKNKVIFLSWQLNKDFEDNFLSIVNDKI- 69
Query: 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEG---PRGWMNSGLPW 254
+ +F L + S + A +T G+KN Y I DG EG +GW + LPW
Sbjct: 70 ---HAIIFFLCRSGYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNLPW 121
>sp|Q9FN48|CAS_ARATH Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana
GN=CAS PE=1 SV=1
Length = 387
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 190 KPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249
K +LKK++ + + + ILD + ++++VA+ + + G+KN Y + DG G RGW+
Sbjct: 292 KISYLKKIN------KGSNIIILDSYTDSAKIVAKTLKVLGYKNCYIVTDGFSGGRGWLQ 345
Query: 250 SGL 252
S L
Sbjct: 346 SRL 348
>sp|Q6BLM0|ATG15_DEBHA Putative lipase ATG15 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ATG15 PE=3
SV=2
Length = 615
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 190 KPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTI--KDGAEGPRG- 246
P L K+ L++++ + I D D ++ V L TI+ NAY KD E R
Sbjct: 187 NPALLNKIELEWEDEHE--IPIPDVKDRDT--VVSLATISS--NAYVKFPKDDKEKKRSD 240
Query: 247 WMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLAIAAAAGLGVLAFSEIET 305
W++ G PW+P + ++ + + G + ++ +V + I +G G++ ET
Sbjct: 241 WIDVGDPWVPDENHTDINFGWADDGLRGHVFVSTDNKTVVIGIKGTSGAGLIGTGPEET 299
>sp|Q9UPA5|BSN_HUMAN Protein bassoon OS=Homo sapiens GN=BSN PE=2 SV=4
Length = 3926
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 19/123 (15%)
Query: 240 GAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLAIAAAAGLGVLA 299
GA GP G + P GL +T G+ ++ A A LG
Sbjct: 1207 GARGPHGGPSQ------PTGPRGLGSFEYQDTTDREYGQAAQ----PAAEGTPASLGAAV 1256
Query: 300 FSEIETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGKT 359
+ EI Q + + Q +S+ L FAED+K+ Q FLN + A D +KQ G
Sbjct: 1257 YEEILQTSQSI--VRMRQASSRDLAFAEDKKKEKQ----FLNAESA---YMDPMKQNGGP 1307
Query: 360 LLP 362
L P
Sbjct: 1308 LTP 1310
>sp|Q12769|NU160_HUMAN Nuclear pore complex protein Nup160 OS=Homo sapiens GN=NUP160 PE=1
SV=3
Length = 1436
Score = 35.0 bits (79), Expect = 1.1, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 229 NGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLA 288
N N+Y D AE R ++N L ++A+ L ++E + +G+G + F +
Sbjct: 1323 NWLINSYKKVDAAELLRLYLNYDLL----EEAVDL----VSEYVDAVLGKGHQYFGIEFP 1374
Query: 289 IAAAAGLGVLAFSEIETILQILGSAAL----VQFASKKLLFAEDRKQTLQQ 335
++A A + L +S I+ +LQ LG + + + K L ED +Q + +
Sbjct: 1375 LSATAPMVWLPYSSIDQLLQALGENSANSHNIALSQKILDKLEDYQQKVDK 1425
>sp|Q93WI0|STR12_ARATH Rhodanese-like/PpiC domain-containing protein 12 OS=Arabidopsis
thaliana GN=At5g19370 PE=2 SV=1
Length = 299
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
Query: 124 LVLSQVLNKPKSWGVESARNAYAKLGDDA---SAQLLDIRAPVEFRQVGSPDVRGLGKRP 180
L L QVL++ + ++K+ D AQL+D+R P E P + R
Sbjct: 176 LHLLQVLSEREPVKDIQVEELHSKMQDPVFMDEAQLIDVREPNEIEIASLPGFKVFPLRQ 235
Query: 181 VSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDG 240
G P KL+ PE T F+L K G S VA + GFK+ Y I G
Sbjct: 236 F-----GTWAPDITSKLN-----PEKDT-FVLCKVGGRSMQVANWLQSQGFKSVYNITGG 284
Query: 241 AEG 243
+
Sbjct: 285 IQA 287
>sp|Q87QP4|FTSK_VIBPA DNA translocase FtsK OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=ftsK PE=3 SV=1
Length = 1028
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 29/140 (20%)
Query: 286 TLAIAAAAGLGVLAFSEIE--TILQILGSAALVQFASKKLLFAEDRKQTLQ-QVDEFLNT 342
TL + G G F+ I I++ LG +L A+ F ++TL+ Q+DEF+
Sbjct: 172 TLVLLFLWGAGFTLFTGISWLNIVEWLGDRSLAVLAAIANKFRGSEQETLEPQLDEFVED 231
Query: 343 KVAPKELADDIKQIGKTLLPSPANGKALPASTDSKVQK------ADDSPEAVPQPKVEAA 396
KV+ K + DD + + + LP T +V++ + P +PQ K E +
Sbjct: 232 KVSTKHVEDDQQ-----------DDETLPHLTAYEVEEPKEKAAVHEYPIYMPQAKSETS 280
Query: 397 A-----DPPPQ----VNSVP 407
A +P PQ VN+ P
Sbjct: 281 AVKPTPEPQPQRVAAVNATP 300
>sp|C5BP37|MRAY_TERTT Phospho-N-acetylmuramoyl-pentapeptide-transferase OS=Teredinibacter
turnerae (strain ATCC 39867 / T7901) GN=mraY PE=3 SV=1
Length = 360
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 22/190 (11%)
Query: 124 LVLSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSI 183
L+L ++ W S R A L + L+ ++R+V + +GL P
Sbjct: 78 LILFSIVTATLLWADLSNRYVLAVLFVTITFGLIGWVD--DYRKVVEKNSKGL---PAKW 132
Query: 184 VYKGDDKPGFLKKLSLKF--KEPENTTLFI-----LDKFDGNSELVAELVTINGFKNAYT 236
Y GF+ ++L + P TTL+I + G + + I GF NA
Sbjct: 133 KYFWQSACGFIVAIALFVTAQTPAETTLYIPFFKNVAWQMGVLYVFVTYLMIVGFSNAVN 192
Query: 237 IKDGAEGPRGWMNSGLPWIPPKKALGLDL-----SNLTETISGAIGEGSEGFSVTLAIAA 291
+ DG +G + +P + ALG+ +N +E + A GS V A A
Sbjct: 193 LTDGLDGL-----AIMPTVMVGSALGVIAYLVGNANFSEYLHIAFVPGSGELVVYCAALA 247
Query: 292 AAGLGVLAFS 301
AGLG L F+
Sbjct: 248 GAGLGFLWFN 257
>sp|Q9Z0W3|NU160_MOUSE Nuclear pore complex protein Nup160 OS=Mus musculus GN=Nup160 PE=1
SV=2
Length = 1402
Score = 34.3 bits (77), Expect = 1.8, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 229 NGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTLA 288
N N+Y D AE R ++N L ++A+ L ++E + +G+G + F +
Sbjct: 1289 NWLINSYKKVDAAELLRLYLNYDLL----EEAVDL----VSEYVDAVLGKGHQYFGIEFP 1340
Query: 289 IAAAAGLGVLAFSEIETILQILG 311
++A A + L +S I+ +LQ LG
Sbjct: 1341 LSATAPMVWLPYSSIDQLLQALG 1363
>sp|B1LB32|ASPD_THESQ Probable L-aspartate dehydrogenase OS=Thermotoga sp. (strain RQ2)
GN=nadX PE=3 SV=1
Length = 241
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 228 INGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTL 287
I G +IKD E R + I P K+LGLDL T G++ E S+ F +
Sbjct: 110 IGGLDVLSSIKDFVETVR------IETIKPPKSLGLDLKGKTVVFEGSVEEASKLFPRNI 163
Query: 288 AIAAAAGLGVLAFSEIETIL 307
+A+ GL ++ F +++ +
Sbjct: 164 NVASTIGL-IVGFEKVKVTI 182
>sp|Q9X1X6|ASPD_THEMA L-aspartate dehydrogenase OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=nadX PE=1 SV=1
Length = 241
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 228 INGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDLSNLTETISGAIGEGSEGFSVTL 287
I G +IKD + R + I P K+LGLDL T G++ E S+ F +
Sbjct: 110 IGGLDVLSSIKDFVKNVR------IETIKPPKSLGLDLKGKTVVFEGSVEEASKLFPRNI 163
Query: 288 AIAAAAGLGVLAFSEIETIL 307
+A+ GL ++ F +++ +
Sbjct: 164 NVASTIGL-IVGFEKVKVTI 182
>sp|O93794|TOP2_CANGA DNA topoisomerase 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TOP2 PE=3 SV=2
Length = 1406
Score = 32.7 bits (73), Expect = 5.3, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 331 QTLQQVDEFLNTKVAPKELADDIKQIGKTLLPSPANGKALPASTDSKVQKADDSPEAVPQ 390
+ Q++D FL PK K+ G +GK PA K++K DD + +
Sbjct: 1167 EDFQKMDLFLRNSAVPKTKGGKRKRKGGDDDDYDPSGKKKPARRIKKIKKEDDFDRILIK 1226
Query: 391 PKVEAAADPPPQVNSVPKTEVKADSLPRFQRSL 423
P+ + A P +V P + A S P + L
Sbjct: 1227 PQAKIKAKRPVKVKVEPPSS--AASTPSVKEEL 1257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,197,894
Number of Sequences: 539616
Number of extensions: 6908634
Number of successful extensions: 21148
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 20871
Number of HSP's gapped (non-prelim): 281
length of query: 451
length of database: 191,569,459
effective HSP length: 121
effective length of query: 330
effective length of database: 126,275,923
effective search space: 41671054590
effective search space used: 41671054590
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)