Query 013011
Match_columns 451
No_of_seqs 274 out of 1640
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:37:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05320 rhodanese superfamily 99.9 8.5E-23 1.8E-27 200.3 9.8 199 49-265 25-231 (257)
2 PRK01415 hypothetical protein; 99.9 1.3E-22 2.7E-27 198.6 8.9 200 49-266 27-230 (247)
3 COG1054 Predicted sulfurtransf 99.8 5.1E-21 1.1E-25 190.3 1.5 201 48-265 26-230 (308)
4 cd01518 RHOD_YceA Member of th 99.8 9.9E-20 2.1E-24 151.9 8.2 99 138-249 3-101 (101)
5 PLN02160 thiosulfate sulfurtra 99.8 5.9E-19 1.3E-23 157.5 10.9 113 132-258 10-130 (136)
6 PRK00142 putative rhodanese-re 99.8 3.8E-19 8.2E-24 179.1 10.2 195 51-265 28-229 (314)
7 cd01533 4RHOD_Repeat_2 Member 99.8 1E-18 2.3E-23 147.9 10.5 101 135-251 8-109 (109)
8 PRK00162 glpE thiosulfate sulf 99.8 2.2E-18 4.8E-23 145.6 9.0 104 136-258 4-107 (108)
9 cd01522 RHOD_1 Member of the R 99.8 4.2E-18 9.1E-23 147.2 10.4 108 139-255 1-116 (117)
10 cd01523 RHOD_Lact_B Member of 99.8 3.5E-18 7.5E-23 142.1 9.1 97 139-249 1-100 (100)
11 KOG1530 Rhodanese-related sulf 99.7 5.9E-18 1.3E-22 151.2 10.1 111 133-255 19-135 (136)
12 cd01527 RHOD_YgaP Member of th 99.7 1.4E-17 2.9E-22 138.1 9.9 97 138-254 3-99 (99)
13 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 1.9E-17 4E-22 152.1 11.8 113 132-254 31-162 (162)
14 cd01534 4RHOD_Repeat_3 Member 99.7 3E-17 6.5E-22 135.8 9.2 94 139-249 1-95 (95)
15 COG0607 PspE Rhodanese-related 99.7 7E-17 1.5E-21 134.3 9.0 96 146-257 13-109 (110)
16 cd01526 RHOD_ThiF Member of th 99.7 8.9E-17 1.9E-21 139.3 8.5 106 137-254 8-118 (122)
17 cd01528 RHOD_2 Member of the R 99.7 1.2E-16 2.6E-21 133.4 8.6 96 139-249 2-98 (101)
18 cd01444 GlpE_ST GlpE sulfurtra 99.7 1.3E-16 2.9E-21 130.4 8.2 94 139-249 2-96 (96)
19 cd01519 RHOD_HSP67B2 Member of 99.7 1.6E-16 3.5E-21 132.4 8.8 99 140-249 2-106 (106)
20 cd01525 RHOD_Kc Member of the 99.7 1.1E-16 2.3E-21 133.5 7.6 100 139-248 1-104 (105)
21 cd01521 RHOD_PspE2 Member of t 99.7 2.4E-16 5.2E-21 134.1 9.1 100 137-254 8-110 (110)
22 cd01447 Polysulfide_ST Polysul 99.7 1.7E-16 3.7E-21 131.1 7.7 101 139-251 1-103 (103)
23 cd01530 Cdc25 Cdc25 phosphatas 99.6 4.1E-16 9E-21 136.2 8.5 97 138-248 3-120 (121)
24 cd01448 TST_Repeat_1 Thiosulfa 99.6 1.2E-15 2.7E-20 130.8 10.8 101 139-251 2-122 (122)
25 smart00450 RHOD Rhodanese Homo 99.6 1E-15 2.2E-20 122.7 9.2 92 151-253 2-100 (100)
26 cd01520 RHOD_YbbB Member of th 99.6 1.2E-15 2.6E-20 133.6 10.4 98 139-249 1-126 (128)
27 cd01449 TST_Repeat_2 Thiosulfa 99.6 1.1E-15 2.4E-20 129.9 7.8 101 139-249 1-118 (118)
28 cd01531 Acr2p Eukaryotic arsen 99.6 1.9E-15 4.2E-20 128.9 8.5 100 138-250 3-112 (113)
29 cd01535 4RHOD_Repeat_4 Member 99.6 4.2E-15 9E-20 134.2 10.0 104 144-265 2-105 (145)
30 cd01524 RHOD_Pyr_redox Member 99.6 2.6E-15 5.6E-20 123.1 7.4 89 139-248 1-89 (90)
31 cd01532 4RHOD_Repeat_1 Member 99.6 3.9E-15 8.4E-20 123.1 8.4 86 147-249 5-92 (92)
32 PF00581 Rhodanese: Rhodanese- 99.6 5.6E-15 1.2E-19 122.3 9.2 99 140-249 1-112 (113)
33 cd01529 4RHOD_Repeats Member o 99.6 4.1E-15 8.8E-20 123.0 8.2 86 151-249 10-96 (96)
34 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 6E-15 1.3E-19 126.0 8.3 98 138-248 3-112 (113)
35 PRK08762 molybdopterin biosynt 99.6 1.3E-14 2.7E-19 148.8 11.4 106 136-259 2-107 (376)
36 cd00158 RHOD Rhodanese Homolog 99.5 1E-14 2.2E-19 115.9 6.9 88 144-248 2-89 (89)
37 PRK07878 molybdopterin biosynt 99.5 3.6E-14 7.7E-19 146.7 10.2 102 136-253 286-387 (392)
38 TIGR02981 phageshock_pspE phag 99.5 8.1E-14 1.8E-18 119.1 9.2 81 152-249 17-97 (101)
39 PRK07411 hypothetical protein; 99.5 1.4E-13 3E-18 142.4 9.4 106 136-255 281-387 (390)
40 PRK10287 thiosulfate:cyanide s 99.5 2.1E-13 4.5E-18 117.4 8.5 82 151-249 18-99 (104)
41 PRK05600 thiamine biosynthesis 99.4 2.3E-13 5E-18 140.1 8.1 95 138-241 272-368 (370)
42 PRK11493 sseA 3-mercaptopyruva 99.4 7.6E-13 1.6E-17 130.4 11.1 110 138-258 6-137 (281)
43 PRK11493 sseA 3-mercaptopyruva 99.4 4.9E-13 1.1E-17 131.8 8.5 110 139-258 155-281 (281)
44 PRK09629 bifunctional thiosulf 99.4 9.6E-13 2.1E-17 143.3 11.3 108 138-257 10-130 (610)
45 PLN02723 3-mercaptopyruvate su 99.4 2.6E-12 5.7E-17 129.4 10.6 109 137-257 22-152 (320)
46 PRK05597 molybdopterin biosynt 99.3 1.9E-12 4E-17 132.5 7.2 94 138-250 262-355 (355)
47 TIGR03167 tRNA_sel_U_synt tRNA 99.3 2.9E-12 6.3E-17 129.5 8.2 94 153-257 2-122 (311)
48 cd01446 DSP_MapKP N-terminal r 99.3 7.8E-12 1.7E-16 109.4 9.7 101 139-249 2-126 (132)
49 PLN02723 3-mercaptopyruvate su 99.3 3.9E-12 8.5E-17 128.2 8.6 109 139-257 192-318 (320)
50 PRK11784 tRNA 2-selenouridine 99.3 4.9E-12 1.1E-16 129.5 8.6 104 140-256 4-135 (345)
51 PRK09629 bifunctional thiosulf 99.3 1.7E-11 3.8E-16 133.6 10.5 114 138-261 148-276 (610)
52 cd01445 TST_Repeats Thiosulfat 99.2 6.4E-11 1.4E-15 106.1 9.7 100 139-248 1-137 (138)
53 PRK01269 tRNA s(4)U8 sulfurtra 99.0 8.9E-10 1.9E-14 117.0 7.1 81 142-239 398-482 (482)
54 COG2897 SseA Rhodanese-related 98.9 6.1E-09 1.3E-13 104.6 9.3 109 139-257 158-283 (285)
55 KOG2017 Molybdopterin synthase 98.7 1.1E-08 2.5E-13 104.7 4.6 102 137-250 317-419 (427)
56 COG2897 SseA Rhodanese-related 98.6 1.7E-07 3.7E-12 94.2 11.1 108 138-256 12-138 (285)
57 KOG3772 M-phase inducer phosph 97.8 2.9E-05 6.4E-10 79.4 5.9 107 132-250 151-276 (325)
58 KOG1529 Mercaptopyruvate sulfu 97.5 0.00052 1.1E-08 69.2 10.2 108 139-258 7-138 (286)
59 PF14159 CAAD: CAAD domains of 96.7 0.004 8.6E-08 53.1 6.2 39 303-341 48-86 (90)
60 KOG1529 Mercaptopyruvate sulfu 96.4 0.0073 1.6E-07 61.2 6.6 89 151-249 170-275 (286)
61 TIGR01244 conserved hypothetic 95.3 0.082 1.8E-06 47.4 8.1 86 137-226 13-106 (135)
62 PLN02777 photosystem I P subun 95.0 0.042 9.2E-07 51.7 5.3 40 303-342 123-162 (167)
63 PF04273 DUF442: Putative phos 94.9 0.095 2.1E-06 46.1 7.0 84 137-224 13-104 (110)
64 COG5105 MIH1 Mitotic inducer, 94.2 0.06 1.3E-06 55.8 4.7 100 135-253 240-360 (427)
65 COG2603 Predicted ATPase [Gene 89.5 0.4 8.8E-06 49.3 4.2 80 152-241 14-123 (334)
66 cd00127 DSPc Dual specificity 86.9 2.2 4.8E-05 36.8 6.6 74 151-231 26-109 (139)
67 smart00195 DSPc Dual specifici 84.7 3.4 7.3E-05 36.0 6.7 74 151-231 25-106 (138)
68 PF13350 Y_phosphatase3: Tyros 82.3 3.8 8.2E-05 37.4 6.3 48 136-186 27-74 (164)
69 PLN02727 NAD kinase 78.6 7.1 0.00015 45.9 8.1 89 137-228 267-365 (986)
70 PF09992 DUF2233: Predicted pe 60.2 11 0.00023 34.5 3.7 38 204-241 98-140 (170)
71 PLN03209 translocon at the inn 57.0 16 0.00034 41.0 4.9 24 405-429 421-444 (576)
72 PF00782 DSPc: Dual specificit 56.1 9 0.0002 33.0 2.4 72 153-231 19-101 (133)
73 PF01451 LMWPc: Low molecular 52.3 14 0.00031 32.4 3.0 34 209-242 1-39 (138)
74 KOG1093 Predicted protein kina 51.8 4.6 9.9E-05 45.2 -0.2 91 138-241 623-715 (725)
75 COG3453 Uncharacterized protei 50.5 46 0.00099 30.6 5.9 79 137-223 14-104 (130)
76 TIGR02689 ars_reduc_gluta arse 48.0 52 0.0011 28.9 5.9 49 207-255 1-57 (126)
77 PF07462 MSP1_C: Merozoite sur 46.5 69 0.0015 35.9 7.6 20 355-374 252-271 (574)
78 PF05706 CDKN3: Cyclin-depende 45.4 33 0.00072 32.8 4.5 78 151-230 70-159 (168)
79 PTZ00242 protein tyrosine phos 45.3 1.3E+02 0.0027 28.1 8.3 26 204-229 96-123 (166)
80 PF13344 Hydrolase_6: Haloacid 41.9 41 0.00089 28.6 4.2 36 192-232 21-57 (101)
81 PRK00575 tatA twin arginine tr 40.3 1.1E+02 0.0024 26.7 6.5 60 308-373 10-70 (92)
82 TIGR00853 pts-lac PTS system, 40.0 34 0.00074 29.1 3.4 27 206-232 3-33 (95)
83 PLN03209 translocon at the inn 39.2 26 0.00057 39.3 3.2 28 401-428 349-376 (576)
84 PRK12361 hypothetical protein; 36.8 90 0.002 34.2 6.8 84 139-227 108-198 (547)
85 PHA02119 hypothetical protein 35.5 51 0.0011 27.6 3.6 48 317-364 9-74 (87)
86 smart00226 LMWPc Low molecular 35.1 51 0.0011 29.0 3.9 33 209-241 1-34 (140)
87 PTZ00393 protein tyrosine phos 35.0 1.2E+02 0.0026 30.6 6.8 71 151-231 115-197 (241)
88 PF03853 YjeF_N: YjeF-related 34.6 63 0.0014 29.9 4.5 53 203-257 22-87 (169)
89 PF08997 UCR_6-4kD: Ubiquinol- 34.3 31 0.00067 27.5 2.0 28 283-310 18-45 (56)
90 PF10777 YlaC: Inner membrane 34.2 18 0.00038 34.1 0.8 69 103-174 29-97 (155)
91 KOG0333 U5 snRNP-like RNA heli 33.8 60 0.0013 36.5 4.8 47 194-241 505-551 (673)
92 PF03162 Y_phosphatase2: Tyros 33.4 61 0.0013 30.3 4.2 27 203-229 88-115 (164)
93 PRK00142 putative rhodanese-re 31.8 9.9 0.00021 39.1 -1.4 83 139-235 16-105 (314)
94 PF12007 DUF3501: Protein of u 31.2 35 0.00075 33.3 2.3 45 324-369 42-88 (192)
95 PRK10499 PTS system N,N'-diace 30.8 59 0.0013 28.3 3.4 23 206-228 3-25 (106)
96 PRK09590 celB cellobiose phosp 30.4 54 0.0012 28.6 3.1 26 207-232 2-31 (104)
97 cd00133 PTS_IIB PTS_IIB: subun 30.2 48 0.001 25.4 2.6 26 208-233 1-31 (84)
98 PF02302 PTS_IIB: PTS system, 29.3 67 0.0015 25.9 3.4 25 208-232 1-30 (90)
99 TIGR03167 tRNA_sel_U_synt tRNA 29.1 1.7E+02 0.0036 30.3 6.9 71 139-220 138-210 (311)
100 COG0062 Uncharacterized conser 28.3 1.3E+02 0.0028 29.5 5.7 36 206-241 49-87 (203)
101 PRK10126 tyrosine phosphatase; 27.4 85 0.0018 28.3 4.0 34 207-241 3-37 (147)
102 PRK05298 excinuclease ABC subu 27.4 96 0.0021 35.1 5.2 46 193-241 435-480 (652)
103 TIGR02691 arsC_pI258_fam arsen 27.4 1.4E+02 0.003 26.5 5.3 47 209-255 1-55 (129)
104 cd05565 PTS_IIB_lactose PTS_II 27.4 66 0.0014 27.9 3.1 33 208-241 2-38 (99)
105 PLN03050 pyridoxine (pyridoxam 27.3 86 0.0019 31.2 4.4 27 206-232 60-89 (246)
106 PRK13755 putative mercury tran 27.3 2.8E+02 0.0061 25.7 7.2 49 283-333 27-80 (139)
107 cd05564 PTS_IIB_chitobiose_lic 27.2 63 0.0014 27.4 2.9 33 208-241 1-37 (96)
108 PF14606 Lipase_GDSL_3: GDSL-l 27.0 54 0.0012 31.5 2.7 84 132-239 40-144 (178)
109 cd00115 LMWPc Substituted upda 25.7 83 0.0018 27.8 3.6 34 208-241 2-37 (141)
110 PF04122 CW_binding_2: Putativ 25.7 88 0.0019 25.7 3.5 34 205-241 49-82 (92)
111 COG2453 CDC14 Predicted protei 24.8 1.1E+02 0.0025 28.5 4.5 28 204-231 103-133 (180)
112 PRK13530 arsenate reductase; P 24.7 1.3E+02 0.0027 27.0 4.5 50 206-255 3-60 (133)
113 PF15086 UPF0542: Uncharacteri 23.9 88 0.0019 26.2 3.1 34 93-126 2-35 (74)
114 PF01488 Shikimate_DH: Shikima 23.8 1.3E+02 0.0028 26.6 4.5 34 204-238 10-43 (135)
115 PRK10310 PTS system galactitol 23.3 1E+02 0.0022 26.1 3.4 25 208-232 4-33 (94)
116 PRK11391 etp phosphotyrosine-p 22.9 1.3E+02 0.0028 27.2 4.4 34 207-241 3-37 (144)
117 TIGR00640 acid_CoA_mut_C methy 22.5 2E+02 0.0043 26.0 5.4 49 205-253 52-107 (132)
118 PRK11267 biopolymer transport 22.5 2.8E+02 0.0061 25.0 6.4 46 193-238 86-134 (141)
119 COG0514 RecQ Superfamily II DN 22.1 1E+02 0.0023 34.8 4.2 58 204-262 228-291 (590)
120 PF02590 SPOUT_MTase: Predicte 21.6 1.1E+02 0.0025 28.4 3.8 40 204-243 65-109 (155)
121 PRK07688 thiamine/molybdopteri 21.5 94 0.002 32.3 3.5 36 136-172 276-316 (339)
122 cd00079 HELICc Helicase superf 21.0 1.5E+02 0.0033 24.3 4.1 36 205-241 27-62 (131)
123 PRK15375 pathogenicity island 20.9 1.2E+02 0.0027 33.8 4.4 34 57-90 16-49 (535)
124 PF04722 Ssu72: Ssu72-like pro 20.6 1.1E+02 0.0025 29.9 3.6 29 208-237 3-32 (195)
125 PF02472 ExbD: Biopolymer tran 20.6 3.7E+02 0.008 23.0 6.5 45 193-237 78-126 (130)
126 TIGR02804 ExbD_2 TonB system t 20.2 3.8E+02 0.0083 23.4 6.6 34 204-237 82-118 (121)
127 PLN02918 pyridoxine (pyridoxam 20.0 2.8E+02 0.0061 31.2 6.9 48 206-254 135-192 (544)
No 1
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.88 E-value=8.5e-23 Score=200.34 Aligned_cols=199 Identities=14% Similarity=0.070 Sum_probs=135.8
Q ss_pred HHHHHhhhhccccceecccccchhhccccHHHHHHhhhcCCCCCCchhHHHHHHHhhhccChHHHHHHHHHHHHHHHHH-
Q 013011 49 FLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVTILAVPLVLS- 127 (451)
Q Consensus 49 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~im~~ii~Fi~~npvliag~va~l~l~~v~~- 127 (451)
+.-|-..++.|||||+.||||+++|.+....+++...+.. ++.++.+... +++...+|+--+-+-+- =.++..
T Consensus 25 ~~~~~~~~~~G~i~ia~eGiN~t~~g~~~~id~~~~~l~~---~~~~~dl~~k-~~~~~~~pF~~l~vk~k--~eiv~~g 98 (257)
T PRK05320 25 LARCEALGLKGTILLAPEGINLFLAGTREAIDAFYAWLRA---DARFADLQVK-ESLSDSQPFRRMLVKLK--REIITMK 98 (257)
T ss_pred HHHHHHCCCeEEEEEcCCCceEEEEeeHHHHHHHHHHHhh---CCCccCceee-cccccCCCchhccchhh--hHHhhcC
Confidence 4456778999999999999999999999998988887765 2333332222 13444455432111110 000000
Q ss_pred -hhhcCCC-CCcccCHHHHHHHhcCC-----CCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhh
Q 013011 128 -QVLNKPK-SWGVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLK 200 (451)
Q Consensus 128 -~~~~~~k-g~g~ISp~eA~eLLn~~-----~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~ 200 (451)
...+... ....+++.++.+++++. ++.++||||++.||+. ||++ |++|||+..+. .+.+.+...
T Consensus 99 ~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~-Ghi~------GAiniPl~~f~--~~~~~l~~~ 169 (257)
T PRK05320 99 RPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDV-GTFD------GALDYRIDKFT--EFPEALAAH 169 (257)
T ss_pred CcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHcc-CccC------CCEeCChhHhh--hhHHHHHhh
Confidence 0011111 23569999999998642 3589999999999986 8886 99999986432 122223222
Q ss_pred hCCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCccCCCCccceec
Q 013011 201 FKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDL 265 (451)
Q Consensus 201 lk~~KdkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv~~~K~~~lDr 265 (451)
....++++|++||++|.||.+|++.|++.||++||+|+||| .+|.+.--.-.-.++.|+||-
T Consensus 170 ~~~~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi---~~w~~~~~~~~~~G~~fVFD~ 231 (257)
T PRK05320 170 RADLAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGI---LKYFEEVGGAHYDGDCFVFDY 231 (257)
T ss_pred hhhcCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCH---HHHHHhCCCCeeeeeeeeecC
Confidence 22237899999999999999999999999999999999999 999875322224567788875
No 2
>PRK01415 hypothetical protein; Validated
Probab=99.87 E-value=1.3e-22 Score=198.56 Aligned_cols=200 Identities=10% Similarity=0.054 Sum_probs=135.6
Q ss_pred HHHHHhhhhccccceecccccchhhccccHHHHHHhhhcCCCCCCchhHHHHHHHhhhccChHHHHHHHH--HHHHHHHH
Q 013011 49 FLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVT--ILAVPLVL 126 (451)
Q Consensus 49 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~im~~ii~Fi~~npvliag~va--~l~l~~v~ 126 (451)
+.-|-..++.|||||+.||||++||.|....+++.+.+.+.+ .+..+--.+ +....+|+-=+-+-. -++ .+-+
T Consensus 27 ~~~~~~~~~~G~i~la~EGIN~tisg~~~~~~~~~~~l~~~~---~~~~~~~k~-s~~~~~~F~~l~vr~k~eiV-~~g~ 101 (247)
T PRK01415 27 LLIGKRKYVRGTILLANEGFNGSFSGSYENVNLVLEELIKLT---GPKDVNVKI-NYSDVHPFQKLKVRLKKEIV-AMNV 101 (247)
T ss_pred HHHHHHcCCeeEEEEccCccceEeeCCHHHHHHHHHHHHhCc---CCCCceeec-ccccCCCCCccEEEeeceEE-ecCC
Confidence 455778899999999999999999999888888877776532 222211111 233345432110000 000 0000
Q ss_pred HhhhcCCCCCcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCC
Q 013011 127 SQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPEN 206 (451)
Q Consensus 127 ~~~~~~~kg~g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~Kd 206 (451)
............|+|.++.++++ ++++++||||++.||+. ||++ ||+|+|+..+. ++-+.+......+++
T Consensus 102 ~~~~~~~~~g~~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~-Ghi~------gAinip~~~f~--e~~~~~~~~~~~~k~ 171 (247)
T PRK01415 102 DDLNVDLFKGEYIEPKDWDEFIT-KQDVIVIDTRNDYEVEV-GTFK------SAINPNTKTFK--QFPAWVQQNQELLKG 171 (247)
T ss_pred CCCCccccCccccCHHHHHHHHh-CCCcEEEECCCHHHHhc-CCcC------CCCCCChHHHh--hhHHHHhhhhhhcCC
Confidence 11111111235599999999997 67899999999999996 8886 99999976432 111111111124789
Q ss_pred CeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCc--cCCCCccceech
Q 013011 207 TTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW--IPPKKALGLDLS 266 (451)
Q Consensus 207 kpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPv--v~~~K~~~lDr~ 266 (451)
++|++||++|.||.+|+..|+++||++||+|+||| .+|.+..-+- .-.++.|+||--
T Consensus 172 k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi---~~w~~~~~~~~~~w~G~~fVFD~R 230 (247)
T PRK01415 172 KKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGI---LQYLEDTQNKNNLWQGECFVFDDR 230 (247)
T ss_pred CeEEEECCCChHHHHHHHHHHHcCCCcEEEechHH---HHHHHhcccCCCeeeeeeeeeCce
Confidence 99999999999999999999999999999999999 9999865432 234577889753
No 3
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.81 E-value=5.1e-21 Score=190.35 Aligned_cols=201 Identities=16% Similarity=0.110 Sum_probs=138.4
Q ss_pred hHHHHHhhhhccccceecccccchhhccccHHHHHHhhhcCCCCCCchhHHHHHHHhhhccChHHHHHHHH--HHHHHHH
Q 013011 48 NFLECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSASDVDASGFIDSVISFGTENPLAIAGGVT--ILAVPLV 125 (451)
Q Consensus 48 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~~im~~ii~Fi~~npvliag~va--~l~l~~v 125 (451)
-++-|-+.++.||||||+||||+++|.+....|++.+.+.+.+ .++++.-. ++...++|+--+-+-. -++ .+-
T Consensus 26 l~~~~~~~~vkGrillA~EGINgtvsG~~e~~~~~~~~l~a~~---~f~~l~~K-~s~~~~~pF~r~kVk~kkEIV-~lg 100 (308)
T COG1054 26 LLALCKALGVKGRILLAHEGINGTVSGSAEAIEAYMAWLRADP---GFADLRFK-ISEADEKPFWRLKVKLKKEIV-ALG 100 (308)
T ss_pred HHHHHHHcCceeEEEEccCCcceeEecCHHHHHHHHHHHHhCc---ccccceee-eccccCCCcceEEEeehhhhe-ecC
Confidence 3677889999999999999999999999999999999998863 44443333 2344455543221100 000 000
Q ss_pred HHhhhcCCCCCcc-cCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCC
Q 013011 126 LSQVLNKPKSWGV-ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEP 204 (451)
Q Consensus 126 ~~~~~~~~kg~g~-ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~ 204 (451)
+..-.+-....|. |+|+++++++. +++.++||+|+..||+. ||.. ||++.+...+. +|-+.+.......
T Consensus 101 ~~ddv~p~~~vG~yl~p~~wn~~l~-D~~~vviDtRN~YE~~i-G~F~------gAv~p~~~tFr--efP~~v~~~~~~~ 170 (308)
T COG1054 101 VEDDVDPLENVGTYLSPKDWNELLS-DPDVVVIDTRNDYEVAI-GHFE------GAVEPDIETFR--EFPAWVEENLDLL 170 (308)
T ss_pred CCCCcCccccccCccCHHHHHHHhc-CCCeEEEEcCcceeEee-eeec------CccCCChhhhh--hhHHHHHHHHHhc
Confidence 0110112223344 99999999996 88999999999999995 9985 99998865432 2333333333346
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCCh-hhHhhCCCCccCCCCccceec
Q 013011 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGP-RGWMNSGLPWIPPKKALGLDL 265 (451)
Q Consensus 205 KdkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~-~aWk~aGLPvv~~~K~~~lDr 265 (451)
++++|++||..|.|++++..+|++.||++||+|+|||.+| ..-...|. .--++-|+||-
T Consensus 171 ~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~~~~g~--lw~G~cFVFDe 230 (308)
T COG1054 171 KDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLEDVGTEGS--LWDGKCFVFDE 230 (308)
T ss_pred cCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhhcCccCc--eeccceeEecc
Confidence 7889999999999999999999999999999999999544 11122222 12245677753
No 4
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.80 E-value=9.9e-20 Score=151.92 Aligned_cols=99 Identities=20% Similarity=0.198 Sum_probs=82.1
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCCc
Q 013011 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (451)
Q Consensus 138 ~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG~ 217 (451)
.|++.++.++++ +++.++||||++.||+. ||++ ||+|||+..+. .+...+......+++++||+||++|.
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~-ghi~------gA~~ip~~~~~--~~~~~~~~~~~~~~~~~ivvyC~~G~ 72 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDI-GHFK------GAVNPDVDTFR--EFPFWLDENLDLLKGKKVLMYCTGGI 72 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhc-CEec------cccCCCcccHh--HhHHHHHhhhhhcCCCEEEEECCCch
Confidence 489999999996 67899999999999996 8885 99999987532 12223322122378999999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCCChhhHhh
Q 013011 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 218 RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~ 249 (451)
||..++.+|+++||++||+|.||+ .+|.+
T Consensus 73 rs~~a~~~L~~~G~~~v~~l~GG~---~~W~~ 101 (101)
T cd01518 73 RCEKASAYLKERGFKNVYQLKGGI---LKYLE 101 (101)
T ss_pred hHHHHHHHHHHhCCcceeeechhH---HHHhC
Confidence 999999999999999999999999 99974
No 5
>PLN02160 thiosulfate sulfurtransferase
Probab=99.79 E-value=5.9e-19 Score=157.49 Aligned_cols=113 Identities=20% Similarity=0.257 Sum_probs=91.2
Q ss_pred CCCCCcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCc--EEecCCC------CCChhHHHHHhhhhCC
Q 013011 132 KPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRP--VSIVYKG------DDKPGFLKKLSLKFKE 203 (451)
Q Consensus 132 ~~kg~g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGA--inIPl~~------~~n~~fl~eL~a~lk~ 203 (451)
+......+++.++.++++ + +.++||||++.||.. ||++ |+ +|||+.. +.++.+..++... .
T Consensus 10 ~~~~~~~i~~~e~~~~~~-~-~~~lIDVR~~~E~~~-ghIp------gA~~iniP~~~~~~~~~l~~~~~~~~~~~~--~ 78 (136)
T PLN02160 10 KAEEVVSVDVSQAKTLLQ-S-GHQYLDVRTQDEFRR-GHCE------AAKIVNIPYMLNTPQGRVKNQEFLEQVSSL--L 78 (136)
T ss_pred CceeeeEeCHHHHHHHHh-C-CCEEEECCCHHHHhc-CCCC------CcceecccchhcCcccccCCHHHHHHHHhc--c
Confidence 333467799999999986 3 468999999999996 8885 88 8999732 2223344434321 2
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCccCCC
Q 013011 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (451)
Q Consensus 204 ~KdkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv~~~ 258 (451)
+++++||+||++|.||..+++.|++.||++||++.||+ .+|+++|+|++...
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~---~~W~~~g~p~~~~~ 130 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGY---LAWVDHSFPINQEE 130 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcH---HHHhhCCCCccccc
Confidence 67899999999999999999999999999999999999 99999999998754
No 6
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.78 E-value=3.8e-19 Score=179.13 Aligned_cols=195 Identities=12% Similarity=0.120 Sum_probs=129.8
Q ss_pred HHHhhhhccccceecccccchhhccccHHHHHHhhhcCCC--CCCchhHHHHHHHhhhccChHHH--HHHHHHHHHHHHH
Q 013011 51 ECFAKSVHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSA--SDVDASGFIDSVISFGTENPLAI--AGGVTILAVPLVL 126 (451)
Q Consensus 51 ~~~~~~~~g~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~--~~~~~~~im~~ii~Fi~~npvli--ag~va~l~l~~v~ 126 (451)
.|..-.+-|+++++.+|||++|+.|....++....+.... .++++. .+...++++-- .-..--++ .+-+
T Consensus 28 ~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~~~~~~~i~l~------~~~~~~~~f~~l~~~~~~eLv-~~G~ 100 (314)
T PRK00142 28 LCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKADPRFADIRFK------ISEDDGHAFPRLSVKVRKEIV-ALGL 100 (314)
T ss_pred HHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhhCcCCCCceEE------eccccCCCcccceeeeeeeee-ecCC
Confidence 3446678899999999999999999876666666665431 122221 11111232200 00000000 0000
Q ss_pred H-hhhcCCCCCcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCC
Q 013011 127 S-QVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPE 205 (451)
Q Consensus 127 ~-~~~~~~kg~g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~K 205 (451)
. ++......+..+++.++.++++ +++.++||||++.||+. ||++ ||+|+|+..+. ++...+...+...+
T Consensus 101 d~~v~~~~~~~~~is~~el~~~l~-~~~~vlIDVR~~~E~~~-GhI~------GAi~ip~~~~~--~~~~~l~~~~~~~k 170 (314)
T PRK00142 101 DDDIDPLENVGTYLKPKEVNELLD-DPDVVFIDMRNDYEYEI-GHFE------NAIEPDIETFR--EFPPWVEENLDPLK 170 (314)
T ss_pred CCCCCccccCCcccCHHHHHHHhc-CCCeEEEECCCHHHHhc-CcCC------CCEeCCHHHhh--hhHHHHHHhcCCCC
Confidence 0 0110112235699999999996 67899999999999996 8886 99999987542 23333333334468
Q ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCc--cCCCCccceec
Q 013011 206 NTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW--IPPKKALGLDL 265 (451)
Q Consensus 206 dkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPv--v~~~K~~~lDr 265 (451)
+++||+||.+|.||..++.+|+++||++||+|.||+ .+|.+.=-+- .-.++.|+||-
T Consensus 171 dk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi---~~w~~~~~~~~~~w~G~~fVFD~ 229 (314)
T PRK00142 171 DKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGI---ITYGEDPETQGLLWDGKLYVFDE 229 (314)
T ss_pred cCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchH---HHHHHhhccccceeecCCccccC
Confidence 999999999999999999999999999999999999 9998742221 23567888875
No 7
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.78 E-value=1e-18 Score=147.86 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=83.8
Q ss_pred CCcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeC
Q 013011 135 SWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDK 214 (451)
Q Consensus 135 g~g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~ 214 (451)
....++++++.++++++++.++||||++.||.. ||++ |++|||+.. +...+. .+..+++++||+||+
T Consensus 8 ~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~-ghIp------gainip~~~-----l~~~~~-~l~~~~~~~ivv~C~ 74 (109)
T cd01533 8 HTPSVSADELAALQARGAPLVVLDGRRFDEYRK-MTIP------GSVSCPGAE-----LVLRVG-ELAPDPRTPIVVNCA 74 (109)
T ss_pred cCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhc-CcCC------CceeCCHHH-----HHHHHH-hcCCCCCCeEEEECC
Confidence 346799999999997444689999999999996 7876 999999853 222222 223467899999999
Q ss_pred CCchHHHHHHHHHHcCCCc-EEEcCCCCCChhhHhhCC
Q 013011 215 FDGNSELVAELVTINGFKN-AYTIKDGAEGPRGWMNSG 251 (451)
Q Consensus 215 sG~RS~~AAk~Lkk~GFkn-Vy~L~GGieG~~aWk~aG 251 (451)
+|.||..++..|+.+||++ +++|.||+ .+|+.+|
T Consensus 75 ~G~rs~~a~~~L~~~G~~~~v~~l~gG~---~~W~~~g 109 (109)
T cd01533 75 GRTRSIIGAQSLINAGLPNPVAALRNGT---QGWTLAG 109 (109)
T ss_pred CCchHHHHHHHHHHCCCCcceeEecCCH---HHHHhcC
Confidence 9999999999999999998 99999999 9999876
No 8
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.76 E-value=2.2e-18 Score=145.64 Aligned_cols=104 Identities=19% Similarity=0.303 Sum_probs=88.4
Q ss_pred CcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCC
Q 013011 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (451)
Q Consensus 136 ~g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~s 215 (451)
+..++++++.++++ +++.++||||++.||+. ||++ |++|+|+.. +.+.+. . .+++++|++||.+
T Consensus 4 ~~~is~~el~~~l~-~~~~~ivDvR~~~e~~~-ghi~------gA~~ip~~~-----l~~~~~-~--~~~~~~ivv~c~~ 67 (108)
T PRK00162 4 FECINVEQAHQKLQ-EGGAVLVDIRDPQSFAM-GHAP------GAFHLTNDS-----LGAFMR-Q--ADFDTPVMVMCYH 67 (108)
T ss_pred ccccCHHHHHHHHH-cCCCEEEEcCCHHHHhc-CCCC------CCeECCHHH-----HHHHHH-h--cCCCCCEEEEeCC
Confidence 45799999999996 55689999999999996 7775 999999742 222222 1 2678999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCccCCC
Q 013011 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (451)
Q Consensus 216 G~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv~~~ 258 (451)
|.||..++..|+..||++++++.||+ .+|++.|+|+++.+
T Consensus 68 g~~s~~a~~~L~~~G~~~v~~l~GG~---~~w~~~~~~~~~~~ 107 (108)
T PRK00162 68 GNSSQGAAQYLLQQGFDVVYSIDGGF---EAWRRTFPAEVASG 107 (108)
T ss_pred CCCHHHHHHHHHHCCchheEEecCCH---HHHHhcCCCccCCC
Confidence 99999999999999999999999999 99999999988754
No 9
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.75 E-value=4.2e-18 Score=147.19 Aligned_cols=108 Identities=27% Similarity=0.426 Sum_probs=88.9
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhh-hcCCCCCCCCCCCcEEecCCCCCC----hhHHHHHhhhhCCCCCCeEEEEe
Q 013011 139 ESARNAYAKLGDDASAQLLDIRAPVEFR-QVGSPDVRGLGKRPVSIVYKGDDK----PGFLKKLSLKFKEPENTTLFILD 213 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVRt~~Efe-~~Ghp~lr~~~KGAinIPl~~~~n----~~fl~eL~a~lk~~KdkpIVVyC 213 (451)
||++++.++++++++.++||||++.||+ . ||++ |++|+|+.++.+ ..+...+... .+++++||+||
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~-ghIp------gA~~ip~~~~~~~~~~~~~~~~l~~~--~~~~~~ivv~C 71 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFV-GGVP------DAVHVAWQVYPDMEINPNFLAELEEK--VGKDRPVLLLC 71 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcc-cCCC------CceecchhhccccccCHHHHHHHHhh--CCCCCeEEEEc
Confidence 5889999999855689999999999999 6 7775 999999875322 2344444322 26789999999
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEcCCCCCCh---hhHhhCCCCcc
Q 013011 214 KFDGNSELVAELVTINGFKNAYTIKDGAEGP---RGWMNSGLPWI 255 (451)
Q Consensus 214 ~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~---~aWk~aGLPvv 255 (451)
++|.||..++..|+++||++++++.||++++ .||+...+||.
T Consensus 72 ~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~~~~~~~~~~~~ 116 (117)
T cd01522 72 RSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAAGHRGGVNGWR 116 (117)
T ss_pred CCCccHHHHHHHHHHCCCCeEEECcCceecCCCCCCcccccCCCC
Confidence 9999999999999999999999999999888 77777777764
No 10
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.75 E-value=3.5e-18 Score=142.11 Aligned_cols=97 Identities=21% Similarity=0.371 Sum_probs=78.9
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHH---HHHhhhhCCCCCCeEEEEeCC
Q 013011 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFL---KKLSLKFKEPENTTLFILDKF 215 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl---~eL~a~lk~~KdkpIVVyC~s 215 (451)
|+++++.+++++++++++||||++.||+. ||++ |++|+|+..+.. .+. .+.... .+++++||+||++
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~-ghi~------ga~~ip~~~~~~-~~~~~~~~~~~~--~~~~~~ivv~C~~ 70 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYER-WKID------GENNTPYFDPYF-DFLEIEEDILDQ--LPDDQEVTVICAK 70 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhh-cccC------CCcccccccchH-HHHHhhHHHHhh--CCCCCeEEEEcCC
Confidence 58899999997556789999999999996 7875 999999875321 121 111112 2688999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhh
Q 013011 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 216 G~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~ 249 (451)
|.||..+++.|+++||+ +|+|+||+ .+|+.
T Consensus 71 G~rs~~aa~~L~~~G~~-~~~l~GG~---~~W~~ 100 (100)
T cd01523 71 EGSSQFVAELLAERGYD-VDYLAGGM---KAWSE 100 (100)
T ss_pred CCcHHHHHHHHHHcCce-eEEeCCcH---HhhcC
Confidence 99999999999999998 99999999 99963
No 11
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.74 E-value=5.9e-18 Score=151.25 Aligned_cols=111 Identities=23% Similarity=0.326 Sum_probs=95.3
Q ss_pred CCCCcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCC------CCChhHHHHHhhhhCCCCC
Q 013011 133 PKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKG------DDKPGFLKKLSLKFKEPEN 206 (451)
Q Consensus 133 ~kg~g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~------~~n~~fl~eL~a~lk~~Kd 206 (451)
.+....++..+++++++ .++.++||||+|+||.+ ||++ .++||||.. +.+++|.+++.. .+.+.|
T Consensus 19 ~~~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~-gh~~------~siNiPy~~~~~~~~l~~~eF~kqvg~-~kp~~d 89 (136)
T KOG1530|consen 19 ASNPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQ-GHIP------ASINIPYMSRPGAGALKNPEFLKQVGS-SKPPHD 89 (136)
T ss_pred cCCcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhc-cCCc------ceEeccccccccccccCCHHHHHHhcc-cCCCCC
Confidence 34457799999999997 67799999999999997 6665 899999852 456788888752 234667
Q ss_pred CeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCcc
Q 013011 207 TTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWI 255 (451)
Q Consensus 207 kpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv 255 (451)
+.||++|++|.||..|.+.|...||++|-++.||+ .+|.+.|+|.+
T Consensus 90 ~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~---~~W~~k~~~~~ 135 (136)
T KOG1530|consen 90 KEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSY---LAWVDKGGPKK 135 (136)
T ss_pred CcEEEEeccCcchhHHHHHHHHcCcccccccCccH---HHHHHccCCCC
Confidence 89999999999999999999999999999999999 99999998864
No 12
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.73 E-value=1.4e-17 Score=138.08 Aligned_cols=97 Identities=20% Similarity=0.242 Sum_probs=83.1
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCCc
Q 013011 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (451)
Q Consensus 138 ~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG~ 217 (451)
.++++++.++++ ++ .++||||+++||.. ||++ |++|+|+.++.. .. ...+++++||+||++|.
T Consensus 3 ~i~~~el~~~~~-~~-~~liDvR~~~e~~~-~hi~------ga~~ip~~~~~~-----~~---~~~~~~~~iv~~c~~g~ 65 (99)
T cd01527 3 TISPNDACELLA-QG-AVLVDIREPDEYLR-ERIP------GARLVPLSQLES-----EG---LPLVGANAIIFHCRSGM 65 (99)
T ss_pred ccCHHHHHHHHH-CC-CEEEECCCHHHHHh-CcCC------CCEECChhHhcc-----cc---cCCCCCCcEEEEeCCCc
Confidence 589999999986 33 89999999999986 7875 999999864321 11 12367899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCc
Q 013011 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (451)
Q Consensus 218 RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPv 254 (451)
||..++..|++.||.++|++.||+ .+|+..|+|+
T Consensus 66 ~s~~~~~~L~~~g~~~v~~l~gG~---~~W~~~~~~~ 99 (99)
T cd01527 66 RTQQNAERLAAISAGEAYVLEGGL---DAWKAAGLPV 99 (99)
T ss_pred hHHHHHHHHHHcCCccEEEeeCCH---HHHHHCcCCC
Confidence 999999999999999999999999 9999999985
No 13
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.73 E-value=1.9e-17 Score=152.13 Aligned_cols=113 Identities=21% Similarity=0.205 Sum_probs=87.7
Q ss_pred CCCCCcccCHHHHHHHhcCCCCceEEEecChh----hhhhc--------CCCCCCCCCCCcEEecCCC---CCC---hhH
Q 013011 132 KPKSWGVESARNAYAKLGDDASAQLLDIRAPV----EFRQV--------GSPDVRGLGKRPVSIVYKG---DDK---PGF 193 (451)
Q Consensus 132 ~~kg~g~ISp~eA~eLLn~~~~avLIDVRt~~----Efe~~--------Ghp~lr~~~KGAinIPl~~---~~n---~~f 193 (451)
..+++..|+++++.++++ +++.++||||++. ||... +|++ ||+|+|+.. +.. +.|
T Consensus 31 ~~~~~~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIP------GAv~ip~~~~~~l~~~~~~~~ 103 (162)
T TIGR03865 31 TLKGARVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIP------GSLWLPNTGYGNLAPAWQAYF 103 (162)
T ss_pred ccCCccccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCC------CcEEecccCCCCCCCchhHHH
Confidence 345567899999999997 6678999999876 45431 3665 999999632 211 123
Q ss_pred HHHHhhhhCCCCCCeEEEEeCCCc-hHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCc
Q 013011 194 LKKLSLKFKEPENTTLFILDKFDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (451)
Q Consensus 194 l~eL~a~lk~~KdkpIVVyC~sG~-RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPv 254 (451)
.+.+.+....++|++||+||++|+ ||..++..|+++||++||+|.||+ .+|+.+|+|+
T Consensus 104 ~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~---~aW~~aG~Pv 162 (162)
T TIGR03865 104 RRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGT---DGWQAAGLPL 162 (162)
T ss_pred HHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCH---HHHHHcCCCC
Confidence 344432112368999999999997 899999999999999999999999 9999999995
No 14
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.71 E-value=3e-17 Score=135.79 Aligned_cols=94 Identities=13% Similarity=0.208 Sum_probs=76.4
Q ss_pred cCHHHHHHHhcCC-CCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCCc
Q 013011 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (451)
Q Consensus 139 ISp~eA~eLLn~~-~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG~ 217 (451)
|++.++.++++++ ++.++||||++.||+. ||++ |++|||+.. +..... .+...++++||+||++|.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~-ghip------ga~~ip~~~-----l~~~~~-~~~~~~~~~iv~~c~~G~ 67 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEA-GHLP------GFRHTPGGQ-----LVQETD-HFAPVRGARIVLADDDGV 67 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHh-CCCC------CcEeCCHHH-----HHHHHH-HhcccCCCeEEEECCCCC
Confidence 5889999999744 3678999999999997 7875 999999753 222221 222346889999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCCChhhHhh
Q 013011 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 218 RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~ 249 (451)
||..++.+|+.+||+ |+++.||+ .+|+.
T Consensus 68 rs~~aa~~L~~~G~~-v~~l~GG~---~~W~~ 95 (95)
T cd01534 68 RADMTASWLAQMGWE-VYVLEGGL---AAALA 95 (95)
T ss_pred hHHHHHHHHHHcCCE-EEEecCcH---HHhcC
Confidence 999999999999999 99999999 99963
No 15
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.69 E-value=7e-17 Score=134.31 Aligned_cols=96 Identities=25% Similarity=0.420 Sum_probs=77.9
Q ss_pred HHhcCCCCceEEEecChhhhhhcCCCCCCCCCCC-cEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCCchHHHHHH
Q 013011 146 AKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKR-PVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAE 224 (451)
Q Consensus 146 eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KG-AinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG~RS~~AAk 224 (451)
.++...++.++||||++.||+. +|++ + +.|||++++.. +...+. .+++++||+||++|.||..|++
T Consensus 13 ~~~~~~~~~~liDvR~~~e~~~-~~i~------~~~~~ip~~~~~~--~~~~~~----~~~~~~ivv~C~~G~rS~~aa~ 79 (110)
T COG0607 13 ALLLAGEDAVLLDVREPEEYER-GHIP------GAAINIPLSELKA--AENLLE----LPDDDPIVVYCASGVRSAAAAA 79 (110)
T ss_pred HHhhccCCCEEEeccChhHhhh-cCCC------cceeeeecccchh--hhcccc----cCCCCeEEEEeCCCCChHHHHH
Confidence 3333467899999999999997 4553 7 99999875321 111110 3689999999999999999999
Q ss_pred HHHHcCCCcEEEcCCCCCChhhHhhCCCCccCC
Q 013011 225 LVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (451)
Q Consensus 225 ~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv~~ 257 (451)
.|+++||++++++.||+ .+|+..++|+...
T Consensus 80 ~L~~~G~~~~~~l~gG~---~~w~~~~~~~~~~ 109 (110)
T COG0607 80 ALKLAGFTNVYNLDGGI---DAWKGAGLPLVRG 109 (110)
T ss_pred HHHHcCCccccccCCcH---HHHHhcCCCcccC
Confidence 99999999999999999 9999999998764
No 16
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.68 E-value=8.9e-17 Score=139.26 Aligned_cols=106 Identities=15% Similarity=0.199 Sum_probs=85.5
Q ss_pred cccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhh----hhCCCCCCeEEEE
Q 013011 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL----KFKEPENTTLFIL 212 (451)
Q Consensus 137 g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a----~lk~~KdkpIVVy 212 (451)
..|+++++.++++.++++++||||++.||+. ||++ |++|||+..+.+ ....+.. ....+++++||+|
T Consensus 8 ~~is~~el~~~~~~~~~~~ivDvR~~~e~~~-~hIp------gai~ip~~~~~~--~~~~~~~~~~~~~~~~~~~~ivv~ 78 (122)
T cd01526 8 ERVSVKDYKNILQAGKKHVLLDVRPKVHFEI-CRLP------EAINIPLSELLS--KAAELKSLQELPLDNDKDSPIYVV 78 (122)
T ss_pred cccCHHHHHHHHhCCCCeEEEEcCCHHHhhc-ccCC------CCeEccHHHHhh--hhhhhhhhhhcccccCCCCcEEEE
Confidence 5699999999997546889999999999997 7775 999999864321 1112210 1123688999999
Q ss_pred eCCCchHHHHHHHHHHcCC-CcEEEcCCCCCChhhHhhCCCCc
Q 013011 213 DKFDGNSELVAELVTINGF-KNAYTIKDGAEGPRGWMNSGLPW 254 (451)
Q Consensus 213 C~sG~RS~~AAk~Lkk~GF-knVy~L~GGieG~~aWk~aGLPv 254 (451)
|++|.||..+++.|++.|| ++++++.||+ .+|+....+.
T Consensus 79 C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~---~~W~~~~~~~ 118 (122)
T cd01526 79 CRRGNDSQTAVRKLKELGLERFVRDIIGGL---KAWADKVDPT 118 (122)
T ss_pred CCCCCcHHHHHHHHHHcCCccceeeecchH---HHHHHHhCcc
Confidence 9999999999999999999 7999999999 9999887664
No 17
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.68 E-value=1.2e-16 Score=133.37 Aligned_cols=96 Identities=22% Similarity=0.314 Sum_probs=79.2
Q ss_pred cCHHHHHHHhcCC-CCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCCc
Q 013011 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (451)
Q Consensus 139 ISp~eA~eLLn~~-~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG~ 217 (451)
|+++++.++++.+ ++.++||||++.||+. +|++ |++|+|+.++. ++.+.+.. .++++++|+||++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~-~hI~------ga~~ip~~~~~--~~~~~~~~---~~~~~~vv~~c~~g~ 69 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEI-AFLP------GFLHLPMSEIP--ERSKELDS---DNPDKDIVVLCHHGG 69 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhc-CcCC------CCEecCHHHHH--HHHHHhcc---cCCCCeEEEEeCCCc
Confidence 7899999999753 4689999999999997 6775 99999986422 23333321 146899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCCChhhHhh
Q 013011 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 218 RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~ 249 (451)
||..++..|.+.||++++++.||+ .+|++
T Consensus 70 rs~~~~~~l~~~G~~~v~~l~GG~---~~w~~ 98 (101)
T cd01528 70 RSMQVAQWLLRQGFENVYNLQGGI---DAWSL 98 (101)
T ss_pred hHHHHHHHHHHcCCccEEEecCCH---HHHhh
Confidence 999999999999999999999999 99975
No 18
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.67 E-value=1.3e-16 Score=130.45 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=78.2
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhc-CCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCCc
Q 013011 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQV-GSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVRt~~Efe~~-Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG~ 217 (451)
|++.++.++++++.++++||||++.||+.. ||++ |++|+|+.+ +.+.+. . .+++++||+||++|.
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~------ga~~ip~~~-----~~~~~~-~--~~~~~~ivv~c~~g~ 67 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIP------GAIHLDEDS-----LDDWLG-D--LDRDRPVVVYCYHGN 67 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCC------CCeeCCHHH-----HHHHHh-h--cCCCCCEEEEeCCCC
Confidence 688999999874467999999999999852 7775 999999763 222221 1 368999999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCCChhhHhh
Q 013011 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 218 RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~ 249 (451)
||..++..|++.||+++++++||+ .+|++
T Consensus 68 ~s~~a~~~l~~~G~~~v~~l~gG~---~~w~~ 96 (96)
T cd01444 68 SSAQLAQALREAGFTDVRSLAGGF---EAWRR 96 (96)
T ss_pred hHHHHHHHHHHcCCceEEEcCCCH---HHhcC
Confidence 999999999999999999999999 99963
No 19
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.67 E-value=1.6e-16 Score=132.40 Aligned_cols=99 Identities=21% Similarity=0.236 Sum_probs=78.3
Q ss_pred CHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCC------hhHHHHHhhhhCCCCCCeEEEEe
Q 013011 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK------PGFLKKLSLKFKEPENTTLFILD 213 (451)
Q Consensus 140 Sp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n------~~fl~eL~a~lk~~KdkpIVVyC 213 (451)
|++++.++++.+++.++||||++.||+. ||++ ||+|+|+.++.+ +.|.+.+. ....+++++||+||
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~-ghIp------gA~~ip~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~c 73 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKT-GKIP------GAINIPLSSLPDALALSEEEFEKKYG-FPKPSKDKELIFYC 73 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhc-CcCC------CcEEechHHhhhhhCCCHHHHHHHhc-ccCCCCCCeEEEEC
Confidence 5778888885256799999999999996 8885 999999875321 12222221 11236789999999
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhh
Q 013011 214 KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 214 ~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~ 249 (451)
++|.||..++..|..+||++|+++.||+ .+|.+
T Consensus 74 ~~g~~s~~~~~~l~~~G~~~v~~~~Gg~---~~W~~ 106 (106)
T cd01519 74 KAGVRSKAAAELARSLGYENVGNYPGSW---LDWAA 106 (106)
T ss_pred CCcHHHHHHHHHHHHcCCccceecCCcH---HHHcC
Confidence 9999999999999999999999999999 99963
No 20
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.67 E-value=1.1e-16 Score=133.54 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=77.6
Q ss_pred cCHHHHHHHhcCC-CCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCC-hhHHHHHh--hhhCCCCCCeEEEEeC
Q 013011 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK-PGFLKKLS--LKFKEPENTTLFILDK 214 (451)
Q Consensus 139 ISp~eA~eLLn~~-~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n-~~fl~eL~--a~lk~~KdkpIVVyC~ 214 (451)
||++++.+++.++ ++.++||||++.||+. ||++ ||+|+|+..+.. ......+. ..+...++++||+||.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~-ghIp------gA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~c~ 73 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRR-GHIE------GSINIPFSSVFLKEGELEQLPTVPRLENYKGKIIVIVSH 73 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhC-CccC------CCEeCCHHHhcccccccccccchHHHHhhcCCeEEEEeC
Confidence 6889999999643 3689999999999986 7875 999999864211 01111111 1122246889999999
Q ss_pred CCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHh
Q 013011 215 FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (451)
Q Consensus 215 sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk 248 (451)
+|.||..++..|+..||++||+|.||+ .+|+
T Consensus 74 ~g~~s~~~a~~L~~~G~~~v~~l~GG~---~a~~ 104 (105)
T cd01525 74 SHKHAALFAAFLVKCGVPRVCILDGGI---NALK 104 (105)
T ss_pred CCccHHHHHHHHHHcCCCCEEEEeCcH---HHhc
Confidence 999999999999999999999999999 9996
No 21
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.66 E-value=2.4e-16 Score=134.06 Aligned_cols=100 Identities=13% Similarity=0.155 Sum_probs=82.9
Q ss_pred cccCHHHHHHHhcCC-CCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCC
Q 013011 137 GVESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (451)
Q Consensus 137 g~ISp~eA~eLLn~~-~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~s 215 (451)
..+++.++.+++.++ ++.++||||++.||.. ||++ |++|+|+..+.. ..+. ..+++++||+||++
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~-ghIp------gA~~ip~~~l~~----~~~~---~i~~~~~vvvyc~~ 73 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYAR-GHVP------GAINLPHREICE----NATA---KLDKEKLFVVYCDG 73 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHHhc-CCCC------CCEeCCHHHhhh----Hhhh---cCCCCCeEEEEECC
Confidence 579999999999744 5689999999999996 7875 999999764210 1111 13689999999998
Q ss_pred Cc--hHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCc
Q 013011 216 DG--NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPW 254 (451)
Q Consensus 216 G~--RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPv 254 (451)
|. +|..++..|+++||+ +++|.||+ .+|+.+|+|+
T Consensus 74 g~~~~s~~~a~~l~~~G~~-v~~l~GG~---~~W~~~g~~~ 110 (110)
T cd01521 74 PGCNGATKAALKLAELGFP-VKEMIGGL---DWWKREGYAT 110 (110)
T ss_pred CCCchHHHHHHHHHHcCCe-EEEecCCH---HHHHHCCCCC
Confidence 84 899999999999995 99999999 9999999985
No 22
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.66 E-value=1.7e-16 Score=131.09 Aligned_cols=101 Identities=23% Similarity=0.262 Sum_probs=79.6
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHh--hhhCCCCCCeEEEEeCCC
Q 013011 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLS--LKFKEPENTTLFILDKFD 216 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~--a~lk~~KdkpIVVyC~sG 216 (451)
|+++++.++++ +++.++||||++.||...||++ |++|+|+..+. .+..... .....+++++||+||.+|
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIp------ga~~ip~~~~~--~~~~~~~~~~~~~~~~~~~ivv~c~~g 71 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIP------GAFHAPRGMLE--FWADPDSPYHKPAFAEDKPFVFYCASG 71 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCC------CcEEcccchhh--hhcCccccccccCCCCCCeEEEEcCCC
Confidence 57899999996 5678999999999996558885 99999976421 0110000 000136789999999999
Q ss_pred chHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCC
Q 013011 217 GNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSG 251 (451)
Q Consensus 217 ~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aG 251 (451)
.||..++..|+.+||++|+++.||+ .+|..+|
T Consensus 72 ~~s~~~~~~l~~~G~~~v~~l~Gg~---~~w~~~g 103 (103)
T cd01447 72 WRSALAGKTLQDMGLKPVYNIEGGF---KDWKEAG 103 (103)
T ss_pred CcHHHHHHHHHHcChHHhEeecCcH---HHHhhcC
Confidence 9999999999999999999999999 9998765
No 23
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.64 E-value=4.1e-16 Score=136.21 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=78.1
Q ss_pred ccCHHHHHHHhcCC-----CCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhh---hhCCCCCCeE
Q 013011 138 VESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSL---KFKEPENTTL 209 (451)
Q Consensus 138 ~ISp~eA~eLLn~~-----~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a---~lk~~KdkpI 209 (451)
.|++.++.++++.+ +++++||||++.||+. ||++ ||+|||+.+ .+.+.+.. .+..+++++|
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~-ghI~------gA~~ip~~~----~l~~~~~~~~~~~~~~~~~~v 71 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNG-GHIK------GAVNLSTKD----ELEEFFLDKPGVASKKKRRVL 71 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhC-CcCC------CCEeCCcHH----HHHHHHHHhhcccccCCCCEE
Confidence 58999999999743 4789999999999996 8886 999999752 11122211 1124789999
Q ss_pred EEEeC-CCchHHHHHHHHHHc------------CCCcEEEcCCCCCChhhHh
Q 013011 210 FILDK-FDGNSELVAELVTIN------------GFKNAYTIKDGAEGPRGWM 248 (451)
Q Consensus 210 VVyC~-sG~RS~~AAk~Lkk~------------GFknVy~L~GGieG~~aWk 248 (451)
|+||. +|.||..+++.|+++ ||.+||+|+||| .+|.
T Consensus 72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~---~~f~ 120 (121)
T cd01530 72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGY---KNFF 120 (121)
T ss_pred EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChh---Hhhc
Confidence 99997 999999999999985 999999999999 8884
No 24
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.64 E-value=1.2e-15 Score=130.82 Aligned_cols=101 Identities=19% Similarity=0.181 Sum_probs=81.3
Q ss_pred cCHHHHHHHhcCCCCceEEEecCh-------hhhhhcCCCCCCCCCCCcEEecCCCCCC------------hhHHHHHhh
Q 013011 139 ESARNAYAKLGDDASAQLLDIRAP-------VEFRQVGSPDVRGLGKRPVSIVYKGDDK------------PGFLKKLSL 199 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVRt~-------~Efe~~Ghp~lr~~~KGAinIPl~~~~n------------~~fl~eL~a 199 (451)
++++++.++++ +++.++||+|++ .||+. ||++ |++|+|+.++.+ .++.+.+ .
T Consensus 2 i~~~~l~~~l~-~~~~~ivDvR~~~~~~~~~~~~~~-ghI~------ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 72 (122)
T cd01448 2 VSPDWLAEHLD-DPDVRILDARWYLPDRDGRKEYLE-GHIP------GAVFFDLDEDLDDKSPGPHMLPSPEEFAELL-G 72 (122)
T ss_pred cCHHHHHHHhC-CCCeEEEEeecCCCCCchhhHHhh-CCCC------CCEEcChhhccccCCCCCCCCCCHHHHHHHH-H
Confidence 68899999996 567899999999 99986 8875 999999764321 1122222 1
Q ss_pred hhCCCCCCeEEEEeCC-CchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCC
Q 013011 200 KFKEPENTTLFILDKF-DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSG 251 (451)
Q Consensus 200 ~lk~~KdkpIVVyC~s-G~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aG 251 (451)
.+..+++++||+||++ |.++..++..|+.+||++||++.||+ .+|.++|
T Consensus 73 ~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~---~~W~~~g 122 (122)
T cd01448 73 SLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGL---QAWKAEG 122 (122)
T ss_pred HcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH---HHHHhCc
Confidence 2235789999999999 58999999999999999999999999 9999875
No 25
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.64 E-value=1e-15 Score=122.66 Aligned_cols=92 Identities=26% Similarity=0.398 Sum_probs=73.8
Q ss_pred CCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChh-------HHHHHhhhhCCCCCCeEEEEeCCCchHHHHH
Q 013011 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPG-------FLKKLSLKFKEPENTTLFILDKFDGNSELVA 223 (451)
Q Consensus 151 ~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~-------fl~eL~a~lk~~KdkpIVVyC~sG~RS~~AA 223 (451)
+++.++||+|++.||.. ||++ |++|+|+....... +.+.+ .....+++++||+||.+|.++..++
T Consensus 2 ~~~~~ivDvR~~~e~~~-~hi~------ga~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iv~~c~~g~~a~~~~ 73 (100)
T smart00450 2 DEKVVLLDVRSPEEYEG-GHIP------GAVNIPLSELLDRRGELDILEFEELL-KRLGLDKDKPVVVYCRSGNRSAKAA 73 (100)
T ss_pred CCCEEEEECCCHHHhcc-CCCC------CceeCCHHHhccCCCCcCHHHHHHHH-HHcCCCCCCeEEEEeCCCcHHHHHH
Confidence 46789999999999996 7775 99999986432110 11111 1223578899999999999999999
Q ss_pred HHHHHcCCCcEEEcCCCCCChhhHhhCCCC
Q 013011 224 ELVTINGFKNAYTIKDGAEGPRGWMNSGLP 253 (451)
Q Consensus 224 k~Lkk~GFknVy~L~GGieG~~aWk~aGLP 253 (451)
..|++.||++||+|.||+ .+|++.|+|
T Consensus 74 ~~l~~~G~~~v~~l~GG~---~~w~~~~~~ 100 (100)
T smart00450 74 WLLRELGFKNVYLLDGGY---KEWSAAGPP 100 (100)
T ss_pred HHHHHcCCCceEEecCCH---HHHHhcCCC
Confidence 999999999999999999 999999875
No 26
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.63 E-value=1.2e-15 Score=133.61 Aligned_cols=98 Identities=20% Similarity=0.287 Sum_probs=76.4
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhH------------------------H
Q 013011 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGF------------------------L 194 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~f------------------------l 194 (451)
||++++.++++ ++.++||||++.||+. ||++ ||+|||+.......+ .
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~-ghIp------gAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFE-GHLP------GAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKL 71 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhcc-CcCC------CcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhH
Confidence 68899999986 4689999999999996 8885 999999863211000 0
Q ss_pred HHHhhh---hCCCCCCeEEEEeC-CCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhh
Q 013011 195 KKLSLK---FKEPENTTLFILDK-FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 195 ~eL~a~---lk~~KdkpIVVyC~-sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~ 249 (451)
+++..+ ...+++++||+||+ +|.||..++..|+.+|| +|++|.||+ .+|+.
T Consensus 72 ~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~---~aw~~ 126 (128)
T cd01520 72 KRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGY---KAYRK 126 (128)
T ss_pred HHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcH---HHHHh
Confidence 111111 13478999999997 68999999999999999 699999999 99975
No 27
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.61 E-value=1.1e-15 Score=129.92 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=79.3
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhh----------cCCCCCCCCCCCcEEecCCCCC-------ChhHHHHHhhhh
Q 013011 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQ----------VGSPDVRGLGKRPVSIVYKGDD-------KPGFLKKLSLKF 201 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVRt~~Efe~----------~Ghp~lr~~~KGAinIPl~~~~-------n~~fl~eL~a~l 201 (451)
++++++.++++ +++.++||||++.||.. .||++ |++|+|+.... ++...+++-..+
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIp------gA~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 73 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIP------GAVNIPWTSLLDEDGTFKSPEELRALFAAL 73 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCC------CCcccChHHhcCCCCCcCCHHHHHHHHHHc
Confidence 47889999986 56789999999999974 17775 99999986422 111222221233
Q ss_pred CCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhh
Q 013011 202 KEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 202 k~~KdkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~ 249 (451)
..+++++||+||++|.||..++..|+.+||++++++.||+ .+|.+
T Consensus 74 ~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~---~~W~~ 118 (118)
T cd01449 74 GITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW---SEWGS 118 (118)
T ss_pred CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH---HHhcC
Confidence 3468999999999999999999999999999999999999 99963
No 28
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.61 E-value=1.9e-15 Score=128.89 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=77.9
Q ss_pred ccCHHHHHHHhcCC-CCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeC-C
Q 013011 138 VESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDK-F 215 (451)
Q Consensus 138 ~ISp~eA~eLLn~~-~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~-s 215 (451)
.|+++++.++++++ ++.++||||++ ||.. ||++ |++|+|+..+. ....++......+++++||+||. +
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~-~hi~------gA~~ip~~~l~--~~~~~~~~~~~~~~~~~iv~yC~~~ 72 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DYAG-GHIK------GSWHYPSTRFK--AQLNQLVQLLSGSKKDTVVFHCALS 72 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-ccCC-CcCC------CCEecCHHHHh--hCHHHHHHHHhcCCCCeEEEEeecC
Confidence 48999999999644 56789999999 9986 7875 99999987432 12233322222257889999998 6
Q ss_pred CchHHHHHHHHHH--------cCCCcEEEcCCCCCChhhHhhC
Q 013011 216 DGNSELVAELVTI--------NGFKNAYTIKDGAEGPRGWMNS 250 (451)
Q Consensus 216 G~RS~~AAk~Lkk--------~GFknVy~L~GGieG~~aWk~a 250 (451)
|.||..+++.|.+ .||++||+|.||+ .+|+++
T Consensus 73 ~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~---~~w~~~ 112 (113)
T cd01531 73 QVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGF---NAWESS 112 (113)
T ss_pred CcchHHHHHHHHHHHHHhccccCCCeEEEEcChH---HHHHhh
Confidence 7899999998865 5999999999999 999864
No 29
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.59 E-value=4.2e-15 Score=134.23 Aligned_cols=104 Identities=15% Similarity=0.238 Sum_probs=84.1
Q ss_pred HHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCCchHHHHH
Q 013011 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVA 223 (451)
Q Consensus 144 A~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG~RS~~AA 223 (451)
+.+++..+.+.++||||++.||+. ||++ |++++|.. .+.+.+. .+ +++++|||||.+|.+|..++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~-gHIp------gAi~~~~~-----~l~~~l~-~l--~~~~~vVv~c~~g~~a~~aa 66 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVK-RHIP------GAWWVLRA-----QLAQALE-KL--PAAERYVLTCGSSLLARFAA 66 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHc-CCCC------CceeCCHH-----HHHHHHH-hc--CCCCCEEEEeCCChHHHHHH
Confidence 445665456689999999999996 7775 99999853 2323332 22 46789999999999999999
Q ss_pred HHHHHcCCCcEEEcCCCCCChhhHhhCCCCccCCCCccceec
Q 013011 224 ELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKKALGLDL 265 (451)
Q Consensus 224 k~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv~~~K~~~lDr 265 (451)
..|+..||++|++|.||+ .+|+.+|+|+..+.+.+.-++
T Consensus 67 ~~L~~~G~~~v~~L~GG~---~aW~~~g~pl~~~~~~~~~~~ 105 (145)
T cd01535 67 ADLAALTVKPVFVLEGGT---AAWIAAGLPVESGETRLASPR 105 (145)
T ss_pred HHHHHcCCcCeEEecCcH---HHHHHCCCCcccCCCCCCCCc
Confidence 999999999999999999 999999999998766555443
No 30
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.59 E-value=2.6e-15 Score=123.05 Aligned_cols=89 Identities=18% Similarity=0.340 Sum_probs=74.2
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCCch
Q 013011 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGN 218 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG~R 218 (451)
++++++.++++ ++.++||+|++.||.. ||++ ||+|+|+.. +.+.+. . .+++++||+||++|.+
T Consensus 1 ~~~~e~~~~~~--~~~~iiD~R~~~~~~~-~hip------gA~~ip~~~-----~~~~~~-~--~~~~~~vvl~c~~g~~ 63 (90)
T cd01524 1 VQWHELDNYRA--DGVTLIDVRTPQEFEK-GHIK------GAINIPLDE-----LRDRLN-E--LPKDKEIIVYCAVGLR 63 (90)
T ss_pred CCHHHHHHHhc--CCCEEEECCCHHHHhc-CCCC------CCEeCCHHH-----HHHHHH-h--cCCCCcEEEEcCCChh
Confidence 46888888884 5679999999999996 7876 999999753 222222 1 2568899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEcCCCCCChhhHh
Q 013011 219 SELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (451)
Q Consensus 219 S~~AAk~Lkk~GFknVy~L~GGieG~~aWk 248 (451)
+..+++.|++.|| ++++|.||+ .+|+
T Consensus 64 a~~~a~~L~~~G~-~v~~l~GG~---~~w~ 89 (90)
T cd01524 64 GYIAARILTQNGF-KVKNLDGGY---KTYS 89 (90)
T ss_pred HHHHHHHHHHCCC-CEEEecCCH---HHhc
Confidence 9999999999999 999999999 9996
No 31
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.59 E-value=3.9e-15 Score=123.10 Aligned_cols=86 Identities=16% Similarity=0.307 Sum_probs=68.3
Q ss_pred HhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCCch--HHHHHH
Q 013011 147 KLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGN--SELVAE 224 (451)
Q Consensus 147 LLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG~R--S~~AAk 224 (451)
+++ ++++++||||++.||.. ||++ |++|||+..+.. .... .+ .+++++||+||++|.| |..++.
T Consensus 5 ~~~-~~~~~liDvR~~~e~~~-~hi~------ga~~ip~~~~~~----~~~~-~~-~~~~~~ivl~c~~G~~~~s~~aa~ 70 (92)
T cd01532 5 LLA-REEIALIDVREEDPFAQ-SHPL------WAANLPLSRLEL----DAWV-RI-PRRDTPIVVYGEGGGEDLAPRAAR 70 (92)
T ss_pred hhc-CCCeEEEECCCHHHHhh-CCcc------cCeeCCHHHHHh----hhHh-hC-CCCCCeEEEEeCCCCchHHHHHHH
Confidence 444 66899999999999997 7775 899999753110 1111 11 2468999999999988 689999
Q ss_pred HHHHcCCCcEEEcCCCCCChhhHhh
Q 013011 225 LVTINGFKNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 225 ~Lkk~GFknVy~L~GGieG~~aWk~ 249 (451)
.|+++||++|++|+||+ .+|++
T Consensus 71 ~L~~~G~~~v~~l~GG~---~~W~~ 92 (92)
T cd01532 71 RLSELGYTDVALLEGGL---QGWRA 92 (92)
T ss_pred HHHHcCccCEEEccCCH---HHHcC
Confidence 99999999999999999 99974
No 32
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.59 E-value=5.6e-15 Score=122.31 Aligned_cols=99 Identities=23% Similarity=0.313 Sum_probs=77.2
Q ss_pred CHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCC---CChhHHHH----Hhh-hhCCCCCCeEEE
Q 013011 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGD---DKPGFLKK----LSL-KFKEPENTTLFI 211 (451)
Q Consensus 140 Sp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~---~n~~fl~e----L~a-~lk~~KdkpIVV 211 (451)
||+|+.+++ .+++.++||+|++.||+. ||++ |++|||+... ....+... +.. ....+++++||+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~-~hI~------ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 72 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYER-GHIP------GAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVF 72 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHH-SBET------TEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEE
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHc-CCCC------CCcccccccccccccccccccccccccccccccccccccee
Confidence 689999999 578999999999999997 7875 9999998321 01111111 111 112478889999
Q ss_pred EeCCCchHHHHHHH-----HHHcCCCcEEEcCCCCCChhhHhh
Q 013011 212 LDKFDGNSELVAEL-----VTINGFKNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 212 yC~sG~RS~~AAk~-----Lkk~GFknVy~L~GGieG~~aWk~ 249 (451)
||..|.++..++.. |.++||++|++|.||+ .+|.+
T Consensus 73 yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~---~~w~~ 112 (113)
T PF00581_consen 73 YCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGF---EAWKA 112 (113)
T ss_dssp EESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHH---HHHHH
T ss_pred eeecccccchhHHHHHHHHHHHcCCCCEEEecChH---HHHhc
Confidence 99999999998887 9999999999999999 99986
No 33
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.58 E-value=4.1e-15 Score=123.04 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=69.0
Q ss_pred CCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCC-ChhHHHHHhhhhCCCCCCeEEEEeCCCchHHHHHHHHHHc
Q 013011 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDD-KPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTIN 229 (451)
Q Consensus 151 ~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~-n~~fl~eL~a~lk~~KdkpIVVyC~sG~RS~~AAk~Lkk~ 229 (451)
+++.++||||++.||+. ||++ ||+|+|+..+. +....+.+. ..+++++||+||.+|.+|..++..|++.
T Consensus 10 ~~~~~iiDvR~~~~~~~-~hIp------gA~~ip~~~~~~~~~~~~~~~---~~~~~~~ivv~c~~g~~s~~~~~~l~~~ 79 (96)
T cd01529 10 EPGTALLDVRAEDEYAA-GHLP------GKRSIPGAALVLRSQELQALE---APGRATRYVLTCDGSLLARFAAQELLAL 79 (96)
T ss_pred CCCeEEEeCCCHHHHcC-CCCC------CcEeCCHHHhcCCHHHHHHhh---cCCCCCCEEEEeCChHHHHHHHHHHHHc
Confidence 46789999999999997 7775 99999975432 111111111 1367899999999999999999999999
Q ss_pred CCCcEEEcCCCCCChhhHhh
Q 013011 230 GFKNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 230 GFknVy~L~GGieG~~aWk~ 249 (451)
||++|++|.||+ .+|++
T Consensus 80 G~~~v~~l~GG~---~~W~~ 96 (96)
T cd01529 80 GGKPVALLDGGT---SAWVA 96 (96)
T ss_pred CCCCEEEeCCCH---HHhcC
Confidence 999999999999 99963
No 34
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.57 E-value=6e-15 Score=126.04 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=74.4
Q ss_pred ccCHHHHHHHhcCC-----CCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEE
Q 013011 138 VESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFIL 212 (451)
Q Consensus 138 ~ISp~eA~eLLn~~-----~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVy 212 (451)
.|+++++.++++.+ ++.++||||++ ||+. ||++ |++|||+..+. ....++...+...++++||+|
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~-ghip------gAi~ip~~~~~--~~~~~~~~~~~~~~~~~iv~~ 72 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEG-GHIK------GSINLPAQSCY--QTLPQVYALFSLAGVKLAIFY 72 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCC-Cccc------CceecchhHHH--HHHHHHHHHhhhcCCCEEEEE
Confidence 58999999999744 46899999999 9996 8886 99999986432 122222222223567899999
Q ss_pred eCC-CchHHHHHHHHHH----cCC--CcEEEcCCCCCChhhHh
Q 013011 213 DKF-DGNSELVAELVTI----NGF--KNAYTIKDGAEGPRGWM 248 (451)
Q Consensus 213 C~s-G~RS~~AAk~Lkk----~GF--knVy~L~GGieG~~aWk 248 (451)
|.+ |.||..++++|.+ .|| .++|+|.||+ .+|.
T Consensus 73 C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~---~~w~ 112 (113)
T cd01443 73 CGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGI---KAWY 112 (113)
T ss_pred CCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChh---hhhc
Confidence 997 5799988887664 475 7899999999 9995
No 35
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.56 E-value=1.3e-14 Score=148.83 Aligned_cols=106 Identities=18% Similarity=0.262 Sum_probs=88.4
Q ss_pred CcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCC
Q 013011 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (451)
Q Consensus 136 ~g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~s 215 (451)
+..|+++++.++++ + +.++||||++.||+. ||++ ||+|+|+.. +.+.+. .+..+++++||+||++
T Consensus 2 v~~is~~el~~~l~-~-~~~ivDvR~~~e~~~-ghIp------gAi~ip~~~-----l~~~~~-~~~~~~~~~IvvyC~~ 66 (376)
T PRK08762 2 IREISPAEARARAA-Q-GAVLIDVREAHERAS-GQAE------GALRIPRGF-----LELRIE-THLPDRDREIVLICAS 66 (376)
T ss_pred CceeCHHHHHHHHh-C-CCEEEECCCHHHHhC-CcCC------CCEECCHHH-----HHHHHh-hhcCCCCCeEEEEcCC
Confidence 35699999999996 3 589999999999996 7875 999999753 222222 1123679999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCccCCCC
Q 013011 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPKK 259 (451)
Q Consensus 216 G~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv~~~K 259 (451)
|.||..+++.|+++||++||++.||+ .+|++.|+|+..+..
T Consensus 67 G~rs~~aa~~L~~~G~~~v~~l~GG~---~~W~~~g~p~~~~~~ 107 (376)
T PRK08762 67 GTRSAHAAATLRELGYTRVASVAGGF---SAWKDAGLPLERPRL 107 (376)
T ss_pred CcHHHHHHHHHHHcCCCceEeecCcH---HHHHhcCCccccccC
Confidence 99999999999999999999999999 999999999987643
No 36
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.55 E-value=1e-14 Score=115.93 Aligned_cols=88 Identities=22% Similarity=0.355 Sum_probs=71.7
Q ss_pred HHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCCchHHHHH
Q 013011 144 AYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVA 223 (451)
Q Consensus 144 A~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG~RS~~AA 223 (451)
+.++++ +++..+||+|++.||+. ||++ |++|+|+..... .. .....+++++||+||..|.++..++
T Consensus 2 ~~~~~~-~~~~~iiD~R~~~~~~~-~~i~------ga~~~~~~~~~~-----~~-~~~~~~~~~~vv~~c~~~~~a~~~~ 67 (89)
T cd00158 2 LKELLD-DEDAVLLDVREPEEYAA-GHIP------GAINIPLSELEE-----RA-ALLELDKDKPIVVYCRSGNRSARAA 67 (89)
T ss_pred hHHHhc-CCCeEEEECCCHHHHhc-cccC------CCEecchHHHhh-----HH-HhhccCCCCeEEEEeCCCchHHHHH
Confidence 455665 67899999999999996 7775 999999864211 10 0112478999999999999999999
Q ss_pred HHHHHcCCCcEEEcCCCCCChhhHh
Q 013011 224 ELVTINGFKNAYTIKDGAEGPRGWM 248 (451)
Q Consensus 224 k~Lkk~GFknVy~L~GGieG~~aWk 248 (451)
..|++.||.++|++.||+ .+|+
T Consensus 68 ~~l~~~G~~~v~~l~gG~---~~w~ 89 (89)
T cd00158 68 KLLRKAGGTNVYNLEGGM---LAWK 89 (89)
T ss_pred HHHHHhCcccEEEecCCh---hhcC
Confidence 999999999999999999 8884
No 37
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.52 E-value=3.6e-14 Score=146.67 Aligned_cols=102 Identities=21% Similarity=0.226 Sum_probs=85.1
Q ss_pred CcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCC
Q 013011 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKF 215 (451)
Q Consensus 136 ~g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~s 215 (451)
...|+++++.++++++++.++||||++.||+. ||++ |++|||+..+.... .+. . .+++++||+||++
T Consensus 286 ~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~-ghIp------GAinip~~~l~~~~---~~~-~--l~~d~~iVvyC~~ 352 (392)
T PRK07878 286 GSTITPRELKEWLDSGKKIALIDVREPVEWDI-VHIP------GAQLIPKSEILSGE---ALA-K--LPQDRTIVLYCKT 352 (392)
T ss_pred CCccCHHHHHHHHhCCCCeEEEECCCHHHHhc-CCCC------CCEEcChHHhcchh---HHh-h--CCCCCcEEEEcCC
Confidence 35699999999997555689999999999996 7775 99999986532211 121 1 2688999999999
Q ss_pred CchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCC
Q 013011 216 DGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLP 253 (451)
Q Consensus 216 G~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLP 253 (451)
|.||..++..|++.||++||+++||+ .+|++.+.|
T Consensus 353 G~rS~~aa~~L~~~G~~~V~~L~GG~---~~W~~~~~~ 387 (392)
T PRK07878 353 GVRSAEALAALKKAGFSDAVHLQGGV---VAWAKQVDP 387 (392)
T ss_pred ChHHHHHHHHHHHcCCCcEEEecCcH---HHHHHhcCC
Confidence 99999999999999999999999999 999998766
No 38
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.50 E-value=8.1e-14 Score=119.12 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=66.6
Q ss_pred CCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCCchHHHHHHHHHHcCC
Q 013011 152 ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGF 231 (451)
Q Consensus 152 ~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG~RS~~AAk~Lkk~GF 231 (451)
.+..+||||+++||+. ||++ |++|||+.+ +.+.+. .+..+++++||+||++|.||..++..|+++||
T Consensus 17 ~~~~lIDvR~~~ef~~-ghIp------gAinip~~~-----l~~~l~-~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~ 83 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQ-EHIQ------GAINIPLKE-----IKEHIA-TAVPDKNDTVKLYCNAGRQSGMAKDILLDMGY 83 (101)
T ss_pred cCCEEEECCCHHHHhc-CCCC------CCEECCHHH-----HHHHHH-HhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCC
Confidence 4678999999999997 7775 999999753 222232 22246788999999999999999999999999
Q ss_pred CcEEEcCCCCCChhhHhh
Q 013011 232 KNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 232 knVy~L~GGieG~~aWk~ 249 (451)
++++++ ||+ .+|.-
T Consensus 84 ~~v~~~-GG~---~~~~~ 97 (101)
T TIGR02981 84 THAENA-GGI---KDIAM 97 (101)
T ss_pred CeEEec-CCH---HHhhh
Confidence 999986 999 99964
No 39
>PRK07411 hypothetical protein; Validated
Probab=99.46 E-value=1.4e-13 Score=142.37 Aligned_cols=106 Identities=18% Similarity=0.199 Sum_probs=84.5
Q ss_pred CcccCHHHHHHHhcCCC-CceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeC
Q 013011 136 WGVESARNAYAKLGDDA-SAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDK 214 (451)
Q Consensus 136 ~g~ISp~eA~eLLn~~~-~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~ 214 (451)
...|+++++.++++.++ +.++||||++.||+. ||++ |++|||+.++......+++.. .+++++||+||+
T Consensus 281 ~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~-ghIp------GAiniP~~~l~~~~~~~~l~~---l~~d~~IVvyC~ 350 (390)
T PRK07411 281 IPEMTVTELKALLDSGADDFVLIDVRNPNEYEI-ARIP------GSVLVPLPDIENGPGVEKVKE---LLNGHRLIAHCK 350 (390)
T ss_pred cCccCHHHHHHHHhCCCCCeEEEECCCHHHhcc-CcCC------CCEEccHHHhhcccchHHHhh---cCCCCeEEEECC
Confidence 35699999999997443 679999999999996 7775 999999864322111223321 257899999999
Q ss_pred CCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCcc
Q 013011 215 FDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWI 255 (451)
Q Consensus 215 sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv 255 (451)
+|.||..++..|+++||++ +++.||+ .+|++...|..
T Consensus 351 ~G~RS~~aa~~L~~~G~~~-~~l~GG~---~~W~~~~~p~~ 387 (390)
T PRK07411 351 MGGRSAKALGILKEAGIEG-TNVKGGI---TAWSREVDPSV 387 (390)
T ss_pred CCHHHHHHHHHHHHcCCCe-EEecchH---HHHHHhcCCCC
Confidence 9999999999999999984 6899999 99999877653
No 40
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.46 E-value=2.1e-13 Score=117.38 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=66.6
Q ss_pred CCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCCchHHHHHHHHHHcC
Q 013011 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTING 230 (451)
Q Consensus 151 ~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG~RS~~AAk~Lkk~G 230 (451)
..+-++||||++.||+. ||++ |++|||+.+ +.+.+. .+..+++++||+||++|.||..++..|.++|
T Consensus 18 ~~~~~lIDvR~~~ef~~-ghIp------GAiniP~~~-----l~~~l~-~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G 84 (104)
T PRK10287 18 FAAEHWIDVRVPEQYQQ-EHVQ------GAINIPLKE-----VKERIA-TAVPDKNDTVKLYCNAGRQSGQAKEILSEMG 84 (104)
T ss_pred cCCCEEEECCCHHHHhc-CCCC------ccEECCHHH-----HHHHHH-hcCCCCCCeEEEEeCCChHHHHHHHHHHHcC
Confidence 34567999999999997 7775 999999753 323332 2334677899999999999999999999999
Q ss_pred CCcEEEcCCCCCChhhHhh
Q 013011 231 FKNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 231 FknVy~L~GGieG~~aWk~ 249 (451)
|+++++ .||+ .+|.-
T Consensus 85 ~~~v~~-~GG~---~~~~~ 99 (104)
T PRK10287 85 YTHAEN-AGGL---KDIAM 99 (104)
T ss_pred CCeEEe-cCCH---HHHhh
Confidence 999988 6999 88964
No 41
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.43 E-value=2.3e-13 Score=140.08 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=73.0
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCCh-hHHHHHhhhhCCCCCCeEEEEeCCC
Q 013011 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKP-GFLKKLSLKFKEPENTTLFILDKFD 216 (451)
Q Consensus 138 ~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~-~fl~eL~a~lk~~KdkpIVVyC~sG 216 (451)
.++++++.++++ ++++++||||++.||+. ||++- ..|++|||+.++.+. ++.+++ ...++.+||+||++|
T Consensus 272 ~~~~~el~~~l~-~~~~~lIDVR~~~E~~~-ghI~~---~~gAinIPl~~l~~~~~~~~~l----~~~~~~~Ivv~C~sG 342 (370)
T PRK05600 272 RTDTTSLIDATL-NGSATLLDVREPHEVLL-KDLPE---GGASLKLPLSAITDDADILHAL----SPIDGDNVVVYCASG 342 (370)
T ss_pred ccCHHHHHHHHh-cCCeEEEECCCHHHhhh-ccCCC---CCccEeCcHHHhhcchhhhhhc----cccCCCcEEEECCCC
Confidence 378999999997 55689999999999997 77630 015999998654211 122222 222334999999999
Q ss_pred chHHHHHHHHHHcCCCc-EEEcCCCC
Q 013011 217 GNSELVAELVTINGFKN-AYTIKDGA 241 (451)
Q Consensus 217 ~RS~~AAk~Lkk~GFkn-Vy~L~GGi 241 (451)
.||..|++.|+++||++ ||+|+||+
T Consensus 343 ~RS~~Aa~~L~~~G~~~~v~~l~GG~ 368 (370)
T PRK05600 343 IRSADFIEKYSHLGHELTLHNLPGGV 368 (370)
T ss_pred hhHHHHHHHHHHcCCCCceEEecccc
Confidence 99999999999999996 99999998
No 42
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.42 E-value=7.6e-13 Score=130.43 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=86.2
Q ss_pred ccCHHHHHHHhcCCCCceEEEecC----------hhhhhhcCCCCCCCCCCCcEEecCCCCC-----------ChhHHHH
Q 013011 138 VESARNAYAKLGDDASAQLLDIRA----------PVEFRQVGSPDVRGLGKRPVSIVYKGDD-----------KPGFLKK 196 (451)
Q Consensus 138 ~ISp~eA~eLLn~~~~avLIDVRt----------~~Efe~~Ghp~lr~~~KGAinIPl~~~~-----------n~~fl~e 196 (451)
-++++++.++++ +++.++||+|+ +.+|+. ||++ ||+|+|+.... +++..++
T Consensus 6 lvs~~~l~~~l~-~~~~~iiD~R~~~~~~~~~~~~~~y~~-GHIp------GA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (281)
T PRK11493 6 FVAADWLAEHID-DPEIQIIDARMAPPGQEDRDVAAEYRA-GHIP------GAVFFDIEALSDHTSPLPHMMPRPETFAV 77 (281)
T ss_pred ccCHHHHHHhcC-CCCeEEEEeeCCCCCccccchHHHHHh-CcCC------CCEEcCHHHhcCCCCCCCCCCCCHHHHHH
Confidence 489999999996 67899999997 678986 8886 99999874311 1111122
Q ss_pred HhhhhCCCCCCeEEEEeCCCch-HHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCccCCC
Q 013011 197 LSLKFKEPENTTLFILDKFDGN-SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (451)
Q Consensus 197 L~a~lk~~KdkpIVVyC~sG~R-S~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv~~~ 258 (451)
+-..+..+++++||+||.+|.+ +..++..|+..||++|+++.||+ .+|+++|+|+....
T Consensus 78 ~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~---~~W~~~g~p~~~~~ 137 (281)
T PRK11493 78 AMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGL---AGWQRDDLLLEEGA 137 (281)
T ss_pred HHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCH---HHHHHcCCCccCCC
Confidence 2223345889999999998875 55778899999999999999999 99999999988763
No 43
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.41 E-value=4.9e-13 Score=131.77 Aligned_cols=110 Identities=14% Similarity=0.158 Sum_probs=84.3
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhh----------hcCCCCCCCCCCCcEEecCCCCCCh-hH--HHHHhhhh---C
Q 013011 139 ESARNAYAKLGDDASAQLLDIRAPVEFR----------QVGSPDVRGLGKRPVSIVYKGDDKP-GF--LKKLSLKF---K 202 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVRt~~Efe----------~~Ghp~lr~~~KGAinIPl~~~~n~-~f--l~eL~a~l---k 202 (451)
.+..+....++ ++++++||+|++.||. ..|||+ ||+|+|+..+.++ .+ .++|++.+ .
T Consensus 155 ~~~~~v~~~~~-~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIp------gA~~i~~~~~~~~~~~~~~~~l~~~~~~~g 227 (281)
T PRK11493 155 VRLTDVLLASH-EKTAQIVDARPAARFNAEVDEPRPGLRRGHIP------GALNVPWTELVREGELKTTDELDAIFFGRG 227 (281)
T ss_pred ecHHHHHHhhc-CCCcEEEeCCCccceeeeccCCCCCcccccCC------CcCCCCHHHhcCCCCcCCHHHHHHHHHhcC
Confidence 34455555554 5578999999999995 137886 9999998653221 11 23444333 2
Q ss_pred CCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhh-CCCCccCCC
Q 013011 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN-SGLPWIPPK 258 (451)
Q Consensus 203 ~~KdkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~-aGLPvv~~~ 258 (451)
.+++++||+||++|.||..++..|+.+||++++++.||+ ..|.. .++|++.++
T Consensus 228 ~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~---~eW~~~~~~P~~~~~ 281 (281)
T PRK11493 228 VSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAW---SEWGARADLPVEPAK 281 (281)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCH---HHHccCCCCCcCCCC
Confidence 467899999999999999999999999999999999999 99998 799998653
No 44
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.40 E-value=9.6e-13 Score=143.31 Aligned_cols=108 Identities=13% Similarity=0.191 Sum_probs=88.4
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCC-----------CCh-hHHHHHhhhhCCCC
Q 013011 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGD-----------DKP-GFLKKLSLKFKEPE 205 (451)
Q Consensus 138 ~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~-----------~n~-~fl~eL~a~lk~~K 205 (451)
.|+++++.++++ +++.++||+|++.||.. |||+ ||+|+|++.. .+. .+.+.+ .++..++
T Consensus 10 lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~-GHIP------GAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l-~~lGI~~ 80 (610)
T PRK09629 10 VIEPNDLLERLD-APELILVDLTSSARYEA-GHIR------GARFVDPKRTQLGKPPAPGLLPDTADLEQLF-GELGHNP 80 (610)
T ss_pred eecHHHHHHHhc-CCCEEEEECCChHHHHh-CCCC------CcEEcChhHhhccCCCCCCCCCCHHHHHHHH-HHcCCCC
Confidence 499999999997 67899999999999996 8886 9999987521 111 222323 2445688
Q ss_pred CCeEEEEeCCCc-hHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCccCC
Q 013011 206 NTTLFILDKFDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (451)
Q Consensus 206 dkpIVVyC~sG~-RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv~~ 257 (451)
|++||+||++|+ ++.+++..|+.+||++|++|.||+ .+|+.+|+|+...
T Consensus 81 d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~---~aW~~ag~p~~~~ 130 (610)
T PRK09629 81 DAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGV---LAWEAQALPLSTD 130 (610)
T ss_pred CCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCH---HHHHHcCCccccC
Confidence 999999999885 788999999999999999999999 9999999998654
No 45
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.36 E-value=2.6e-12 Score=129.42 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=85.2
Q ss_pred cccCHHHHHHHhcCCCCceEEEec--------C-hhhhhhcCCCCCCCCCCCcEEecCCCCC-----------C-hhHHH
Q 013011 137 GVESARNAYAKLGDDASAQLLDIR--------A-PVEFRQVGSPDVRGLGKRPVSIVYKGDD-----------K-PGFLK 195 (451)
Q Consensus 137 g~ISp~eA~eLLn~~~~avLIDVR--------t-~~Efe~~Ghp~lr~~~KGAinIPl~~~~-----------n-~~fl~ 195 (451)
.-|+++++.++++ +++.+|||+| + ..+|.. |||+ ||+|+|+.++. . ..|.+
T Consensus 22 ~lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~-gHIP------gAi~i~~~~~~~~~~~~~~~lp~~~~~~~ 93 (320)
T PLN02723 22 PVVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQV-AHIP------GALFFDLDGISDRTTDLPHMLPSEEAFAA 93 (320)
T ss_pred ceecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHh-ccCC------CCeecCHHHhcCCCCCcCCCCCCHHHHHH
Confidence 3599999999996 5789999996 3 378986 8886 99999864211 1 12222
Q ss_pred HHhhhhCCCCCCeEEEEeCCCch-HHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCccCC
Q 013011 196 KLSLKFKEPENTTLFILDKFDGN-SELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (451)
Q Consensus 196 eL~a~lk~~KdkpIVVyC~sG~R-S~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv~~ 257 (451)
.+ ..+...++++|||||++|.+ +..+...|+.+||++|++|.||+ .+|+++|+|+...
T Consensus 94 ~l-~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~---~~W~~~G~pv~~~ 152 (320)
T PLN02723 94 AV-SALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGL---PKWRASGYDVESS 152 (320)
T ss_pred HH-HHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCH---HHHHHcCCCcccC
Confidence 22 23345788999999999975 45777899999999999999999 9999999999875
No 46
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.33 E-value=1.9e-12 Score=132.47 Aligned_cols=94 Identities=16% Similarity=0.234 Sum_probs=74.0
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCCc
Q 013011 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (451)
Q Consensus 138 ~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG~ 217 (451)
.++++++.++. ++.++||||++.||+. ||++ |++|||+.++. .... ....+++++||+||++|.
T Consensus 262 ~i~~~~~~~~~---~~~~IIDVR~~~ef~~-ghIp------gAinip~~~l~-----~~~~-~~~~~~~~~IvvyC~~G~ 325 (355)
T PRK05597 262 VLDVPRVSALP---DGVTLIDVREPSEFAA-YSIP------GAHNVPLSAIR-----EGAN-PPSVSAGDEVVVYCAAGV 325 (355)
T ss_pred ccCHHHHHhcc---CCCEEEECCCHHHHcc-CcCC------CCEEeCHHHhh-----hccc-cccCCCCCeEEEEcCCCH
Confidence 36666666433 4679999999999997 7775 99999986421 1111 011367899999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhC
Q 013011 218 NSELVAELVTINGFKNAYTIKDGAEGPRGWMNS 250 (451)
Q Consensus 218 RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~a 250 (451)
||..++..|++.||++||+++||+ .+|+++
T Consensus 326 rS~~Aa~~L~~~G~~nV~~L~GGi---~~W~~~ 355 (355)
T PRK05597 326 RSAQAVAILERAGYTGMSSLDGGI---EGWLDS 355 (355)
T ss_pred HHHHHHHHHHHcCCCCEEEecCcH---HHHhhC
Confidence 999999999999999999999999 999763
No 47
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.32 E-value=2.9e-12 Score=129.48 Aligned_cols=94 Identities=16% Similarity=0.235 Sum_probs=69.7
Q ss_pred CceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCC-------------------------hhHHHHHhhhhC-CCCC
Q 013011 153 SAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK-------------------------PGFLKKLSLKFK-EPEN 206 (451)
Q Consensus 153 ~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n-------------------------~~fl~eL~a~lk-~~Kd 206 (451)
+..+||||++.||.. ||++ ||+|||+..... +.+.+.+.+... .+++
T Consensus 2 ~~~liDVRsp~Ef~~-ghip------gAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~ 74 (311)
T TIGR03167 2 FDPLIDVRSPAEFAE-GHLP------GAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGP 74 (311)
T ss_pred CCEEEECCCHHHHhc-CCCc------CCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCC
Confidence 468999999999997 8875 999999853110 001111111101 2345
Q ss_pred CeEEEEe-CCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCccCC
Q 013011 207 TTLFILD-KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPP 257 (451)
Q Consensus 207 kpIVVyC-~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv~~ 257 (451)
++||+|| ++|.||..++.+|+.+|| +++++.||+ .+|+..+.+....
T Consensus 75 ~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~---~aw~~~~~~~~~~ 122 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGY---KAYRRFVIDQLEE 122 (311)
T ss_pred CcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChH---HHHHHhhhhhhhc
Confidence 5699999 578999999999999999 699999999 9999999876653
No 48
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.32 E-value=7.8e-12 Score=109.43 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=76.5
Q ss_pred cCHHHHHHHhcCC-CCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCC----hhHH--------HHHhhhhCCCC
Q 013011 139 ESARNAYAKLGDD-ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK----PGFL--------KKLSLKFKEPE 205 (451)
Q Consensus 139 ISp~eA~eLLn~~-~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n----~~fl--------~eL~a~lk~~K 205 (451)
|++.++.++++.+ ++.++||||++.||+. ||++ ||+|+|+..+.. .... ++...++...+
T Consensus 2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~-~hI~------~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (132)
T cd01446 2 IDCAWLAALLREGGERLLLLDCRPFLEYSS-SHIR------GAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRGE 74 (132)
T ss_pred cCHHHHHHHHhcCCCCEEEEECCCHHHHhh-Cccc------CcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcCC
Confidence 7999999999753 5799999999999986 7775 999999763100 0000 01112232336
Q ss_pred CCeEEEEeCCCch---------HHHHHHHHHH--cCCCcEEEcCCCCCChhhHhh
Q 013011 206 NTTLFILDKFDGN---------SELVAELVTI--NGFKNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 206 dkpIVVyC~sG~R---------S~~AAk~Lkk--~GFknVy~L~GGieG~~aWk~ 249 (451)
+++|||||.+|.+ ...+++.|.+ .|+.+|+.|+||+ .+|++
T Consensus 75 ~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~---~~w~~ 126 (132)
T cd01446 75 SLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGF---EQFSS 126 (132)
T ss_pred CCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchH---HHHHh
Confidence 8999999999876 7888899998 5888999999999 99976
No 49
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.31 E-value=3.9e-12 Score=128.16 Aligned_cols=109 Identities=11% Similarity=0.086 Sum_probs=84.7
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhh----------hcCCCCCCCCCCCcEEecCCCCCCh--hH--HHHHhhhh---
Q 013011 139 ESARNAYAKLGDDASAQLLDIRAPVEFR----------QVGSPDVRGLGKRPVSIVYKGDDKP--GF--LKKLSLKF--- 201 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVRt~~Efe----------~~Ghp~lr~~~KGAinIPl~~~~n~--~f--l~eL~a~l--- 201 (451)
++.+++.+.++ +++.++||+|++.||. ..|||+ ||+|+|+..+.+. .| .++|++.+
T Consensus 192 ~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIP------gAvnip~~~~~~~~~~~~~~~el~~~~~~~ 264 (320)
T PLN02723 192 WTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIP------GSKCVPFPQMLDSSQTLLPAEELKKRFEQE 264 (320)
T ss_pred ecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCC------CCcccCHHHhcCCCCCCCCHHHHHHHHHhc
Confidence 57788888885 5678999999999983 247886 9999998532111 11 12333333
Q ss_pred CCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhC-CCCccCC
Q 013011 202 KEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNS-GLPWIPP 257 (451)
Q Consensus 202 k~~KdkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~a-GLPvv~~ 257 (451)
..+++++||+||.+|.||..+.-.|+.+||++|+++.||+ ..|... ++|+..+
T Consensus 265 gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~---~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 265 GISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSW---TEWGALPDTPVATS 318 (320)
T ss_pred CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCH---HHHhcCCCCCccCC
Confidence 3478999999999999999999999999999999999999 999876 6888764
No 50
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.30 E-value=4.9e-12 Score=129.47 Aligned_cols=104 Identities=14% Similarity=0.224 Sum_probs=76.8
Q ss_pred CHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCC-------------------------hhHH
Q 013011 140 SARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDK-------------------------PGFL 194 (451)
Q Consensus 140 Sp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n-------------------------~~fl 194 (451)
...+..+++. ++.++||||++.||.. ||++ ||+|+|+..... +.+.
T Consensus 4 ~~~~~~~~~~--~~~~lIDVRsp~Ef~~-ghIp------gAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~ 74 (345)
T PRK11784 4 DAQDFRALFL--NDTPLIDVRSPIEFAE-GHIP------GAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIA 74 (345)
T ss_pred cHHHHHHHHh--CCCEEEECCCHHHHhc-CCCC------CeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHH
Confidence 3556666653 5789999999999997 7875 999999853110 0111
Q ss_pred HHHhhhhCC--CCCCeEEEEe-CCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCccC
Q 013011 195 KKLSLKFKE--PENTTLFILD-KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIP 256 (451)
Q Consensus 195 ~eL~a~lk~--~KdkpIVVyC-~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv~ 256 (451)
+.+...+.. .++++||+|| ++|.||..++.+|..+|| ++++|.||+ .+|++.+++...
T Consensus 75 ~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~---~awr~~~~~~~~ 135 (345)
T PRK11784 75 AHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGY---KAYRRFVIDTLE 135 (345)
T ss_pred HHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCH---HHHHHhhHHHHh
Confidence 111111111 3789999999 578999999999999999 699999999 999998876544
No 51
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.26 E-value=1.7e-11 Score=133.57 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=89.3
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhh-------hcCCCCCCCCCCCcEEecCCCC-------CChhHHHHHhhhhCC
Q 013011 138 VESARNAYAKLGDDASAQLLDIRAPVEFR-------QVGSPDVRGLGKRPVSIVYKGD-------DKPGFLKKLSLKFKE 203 (451)
Q Consensus 138 ~ISp~eA~eLLn~~~~avLIDVRt~~Efe-------~~Ghp~lr~~~KGAinIPl~~~-------~n~~fl~eL~a~lk~ 203 (451)
.++.+++.+.++ +++.++||+|+++||. +.|||+ ||+|||+... ..++-++++-.....
T Consensus 148 ~v~~e~v~~~l~-~~~~~iIDaR~~~ef~G~~~~~~r~GHIP------GAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi 220 (610)
T PRK09629 148 TATREYLQSRLG-AADLAIWDARAPTEYSGEKVVAAKGGHIP------GAVNFEWTAGMDKARNLRIRQDMPEILRDLGI 220 (610)
T ss_pred cccHHHHHHhhC-CCCcEEEECCCccccCCcccccccCCCCC------CCeecCHHHhcCCCCCCCCHHHHHHHHHHcCC
Confidence 367888888886 6678999999999995 348886 9999998531 111112222222345
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhC-CCCccCCCCcc
Q 013011 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNS-GLPWIPPKKAL 261 (451)
Q Consensus 204 ~KdkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~a-GLPvv~~~K~~ 261 (451)
+++++||+||.+|.||..+.-.|+.+||++|+++.||+ ..|.+. ++|+.+++...
T Consensus 221 ~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw---~eW~~~~~lPv~~~~~~~ 276 (610)
T PRK09629 221 TPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSW---GEWGNHPDTPVEVPTVAA 276 (610)
T ss_pred CCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCH---HHHhCCCCCccccCCCCc
Confidence 78999999999999999999999999999999999999 999885 79998876543
No 52
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.21 E-value=6.4e-11 Score=106.15 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=76.2
Q ss_pred cCHHHHHHHhcC---CCCceEEEecCh--------hhhhh-----------cCCCCCCCCCCCcEEecCCCC--------
Q 013011 139 ESARNAYAKLGD---DASAQLLDIRAP--------VEFRQ-----------VGSPDVRGLGKRPVSIVYKGD-------- 188 (451)
Q Consensus 139 ISp~eA~eLLn~---~~~avLIDVRt~--------~Efe~-----------~Ghp~lr~~~KGAinIPl~~~-------- 188 (451)
+|++++.+.++. +++.++||+|.. .||.. .||++ ||+++|+...
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIP------gAv~~~~~~~~~~~~~~~ 74 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIP------GASFFDFEECLDEAGFEE 74 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCC------CCEeeCHHHhhCcCCCCC
Confidence 578888888863 467999999987 88975 17775 9999997521
Q ss_pred ---CCh-hHHHHHhhhhCCCCCCeEEEEeCC---CchHHHHHHHHHHcCCCcEEEcCCCCCChhhHh
Q 013011 189 ---DKP-GFLKKLSLKFKEPENTTLFILDKF---DGNSELVAELVTINGFKNAYTIKDGAEGPRGWM 248 (451)
Q Consensus 189 ---~n~-~fl~eL~a~lk~~KdkpIVVyC~s---G~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk 248 (451)
.++ .|.+.+ ..+...++++||+||.. |.++..+.-.|+.+|+++|+++.||+ .+|+
T Consensus 75 ~~~p~~~~~~~~~-~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~---~~W~ 137 (138)
T cd01445 75 SMEPSEAEFAAMF-EAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGF---FEWF 137 (138)
T ss_pred CCCCCHHHHHHHH-HHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCH---HHhh
Confidence 011 222222 23355789999999986 67888888899999999999999999 9996
No 53
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.96 E-value=8.9e-10 Score=117.05 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=63.7
Q ss_pred HHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCC----cEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCCc
Q 013011 142 RNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKR----PVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDG 217 (451)
Q Consensus 142 ~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KG----AinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG~ 217 (451)
.+..+.+ .+++++||||+++||+. ||++ | ++|+|+..+ ...+. . .+++++||+||++|.
T Consensus 398 ~~~~~~~--~~~~~lIDVR~~~E~~~-~hI~------g~~~~a~niP~~~l-----~~~~~-~--l~~~~~iivyC~~G~ 460 (482)
T PRK01269 398 VETVSEL--PPDDVIIDIRSPDEQED-KPLK------LEGVEVKSLPFYKL-----STQFG-D--LDQSKTYLLYCDRGV 460 (482)
T ss_pred hHHHHhc--CCCCEEEECCCHHHHhc-CCCC------CCCceEEECCHHHH-----HHHHh-h--cCCCCeEEEECCCCH
Confidence 3334444 35789999999999997 7775 8 999997632 22222 1 367889999999999
Q ss_pred hHHHHHHHHHHcCCCcEEEcCC
Q 013011 218 NSELVAELVTINGFKNAYTIKD 239 (451)
Q Consensus 218 RS~~AAk~Lkk~GFknVy~L~G 239 (451)
||..++..|+++||++|+++.+
T Consensus 461 rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 461 MSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred HHHHHHHHHHHcCCccEEecCC
Confidence 9999999999999999998753
No 54
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.88 E-value=6.1e-09 Score=104.57 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=83.6
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhh---------cCCCCCCCCCCCcEEecCCCCCCh-------hHHHHHhhhhC
Q 013011 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQ---------VGSPDVRGLGKRPVSIVYKGDDKP-------GFLKKLSLKFK 202 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVRt~~Efe~---------~Ghp~lr~~~KGAinIPl~~~~n~-------~fl~eL~a~lk 202 (451)
.+..+....+. ....++||+|++.||.- .|||+ ||+||||....++ +.++.+-+...
T Consensus 158 ~~~~~~~~~~~-~~~~~liDaR~~~rf~G~~~ep~~~~~GHIP------GAiNipw~~~~~~~~~~~~~~~~~~l~~~~g 230 (285)
T COG2897 158 VDATLVADALE-VPAVLLIDARSPERFRGKEPEPRDGKAGHIP------GAINIPWTDLVDDGGLFKSPEEIARLYADAG 230 (285)
T ss_pred CCHHHHHHHhc-CCCeEEEecCCHHHhCCCCCCCCCCCCCCCC------CCcCcCHHHHhcCCCccCcHHHHHHHHHhcC
Confidence 55566666664 67788999999999985 37886 9999998743221 22222222224
Q ss_pred CCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCC-CCccCC
Q 013011 203 EPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMNSG-LPWIPP 257 (451)
Q Consensus 203 ~~KdkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aG-LPvv~~ 257 (451)
.+.+++||+||.+|.||...--.|+..|+.++.++.|++ ..|-+.. .|+..+
T Consensus 231 i~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSW---sEWg~~~~~PV~~g 283 (285)
T COG2897 231 IDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSW---SEWGSDPDRPVETG 283 (285)
T ss_pred CCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChH---HHhhcCCCCccccC
Confidence 588999999999999999999999999999889999999 9998864 477665
No 55
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.70 E-value=1.1e-08 Score=104.66 Aligned_cols=102 Identities=20% Similarity=0.235 Sum_probs=79.8
Q ss_pred cccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCC
Q 013011 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFD 216 (451)
Q Consensus 137 g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG 216 (451)
..||..+..+++++++..++||||++.||+..+.| .++|||+.+..+..- +++... .....++|+|+|+.|
T Consensus 317 ~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP-------~avNIPL~~l~~~~~-~~~~~~-~~~~~~~I~ViCrrG 387 (427)
T KOG2017|consen 317 ERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLP-------EAVNIPLKELRSRSG-KKLQGD-LNTESKDIFVICRRG 387 (427)
T ss_pred hcccHHHHHHHHhcCCCeEEEeccCcceEEEEecc-------cccccchhhhhhhhh-hhhccc-ccccCCCEEEEeCCC
Confidence 35999999999987789999999999999987776 699999976432211 222211 135667899999999
Q ss_pred chHHHHHHHHHHcCCC-cEEEcCCCCCChhhHhhC
Q 013011 217 GNSELVAELVTINGFK-NAYTIKDGAEGPRGWMNS 250 (451)
Q Consensus 217 ~RS~~AAk~Lkk~GFk-nVy~L~GGieG~~aWk~a 250 (451)
+.|..|++.|++.++. +|..+.||+ .+|...
T Consensus 388 NdSQ~Av~~Lre~~~~~~vrDvigGl---~~w~~~ 419 (427)
T KOG2017|consen 388 NDSQRAVRILREKFPDSSVRDVIGGL---KAWAAK 419 (427)
T ss_pred CchHHHHHHHHhhCCchhhhhhhhHH---HHHHHh
Confidence 9999999999977554 677888988 999865
No 56
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=98.65 E-value=1.7e-07 Score=94.22 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=83.4
Q ss_pred ccCHHHHHHHhcCCC-----CceEEEecCh--hhhhhcCCCCCCCCCCCcEEecCCC-----------CCChhHHHHHhh
Q 013011 138 VESARNAYAKLGDDA-----SAQLLDIRAP--VEFRQVGSPDVRGLGKRPVSIVYKG-----------DDKPGFLKKLSL 199 (451)
Q Consensus 138 ~ISp~eA~eLLn~~~-----~avLIDVRt~--~Efe~~Ghp~lr~~~KGAinIPl~~-----------~~n~~fl~eL~a 199 (451)
-++++-+.+.+. ++ ++.+++.+.. .+|.. +||+ ||+.++++. +.+++...++-.
T Consensus 12 lVs~~wl~~~l~-~~~~~~~d~~~~~~~~~~~~~Y~~-~HIP------GAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~ 83 (285)
T COG2897 12 LVSPDWLAENLD-DPAVVIVDARIILPDPDDAEEYLE-GHIP------GAVFFDWEADLSDPVPLPHMLPSPEQFAKLLG 83 (285)
T ss_pred EEcHHHHHhhcc-ccccccCceEEEeCCcchHHHHHh-ccCC------CCEecCHHHhhcCCCCCCCCCCCHHHHHHHHH
Confidence 488888888775 33 7778887777 78886 7775 999998753 112222232323
Q ss_pred hhCCCCCCeEEEEeCCCc-hHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCccC
Q 013011 200 KFKEPENTTLFILDKFDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIP 256 (451)
Q Consensus 200 ~lk~~KdkpIVVyC~sG~-RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv~ 256 (451)
++....|.+||+|+..|+ -+..+.-.|+-+|-++|++|.||+ .+|+++|+|+..
T Consensus 84 ~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~---~~W~~~g~p~~~ 138 (285)
T COG2897 84 ELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGL---PAWKAAGLPLET 138 (285)
T ss_pred HcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCH---HHHHHcCCCccC
Confidence 455689999999997776 688899999999999999999999 999999999875
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=2.9e-05 Score=79.36 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=76.3
Q ss_pred CCCCCcccCHHHHHHHhcC-----CCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHH-HHhhhhCCCC
Q 013011 132 KPKSWGVESARNAYAKLGD-----DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLK-KLSLKFKEPE 205 (451)
Q Consensus 132 ~~kg~g~ISp~eA~eLLn~-----~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~-eL~a~lk~~K 205 (451)
+-..++.||++++..+++. ....++||.|-|.||.. |||. ||+||+..+...+-|.. .+.. ...+
T Consensus 151 k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~G-GHIk------gavnl~~~~~~~~~f~~~~~~~--~~~~ 221 (325)
T KOG3772|consen 151 KSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEG-GHIK------GAVNLYSKELLQDFFLLKDGVP--SGSK 221 (325)
T ss_pred ccccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccC-cccc------cceecccHhhhhhhhccccccc--cccC
Confidence 4455678999999999963 12367999999999995 8984 99999865321111111 0100 0134
Q ss_pred CCeEEEEeCCCc-hHHHHHHHHHH------------cCCCcEEEcCCCCCChhhHhhC
Q 013011 206 NTTLFILDKFDG-NSELVAELVTI------------NGFKNAYTIKDGAEGPRGWMNS 250 (451)
Q Consensus 206 dkpIVVyC~sG~-RS~~AAk~Lkk------------~GFknVy~L~GGieG~~aWk~a 250 (451)
...+|++|..-. |.-++|+.|++ .-|..+|+|.||+ ..|-..
T Consensus 222 ~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGY---k~ff~~ 276 (325)
T KOG3772|consen 222 RVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGY---KEFFSN 276 (325)
T ss_pred ceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccH---HHHHHh
Confidence 567999999775 89999999993 4567899999999 888664
No 58
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=97.54 E-value=0.00052 Score=69.23 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=78.8
Q ss_pred cCHHHHHHHhcCCCCceEEEec---------ChhhhhhcCCCCCCCCCCCcEEecCCCC-----------CC-hhHHHHH
Q 013011 139 ESARNAYAKLGDDASAQLLDIR---------APVEFRQVGSPDVRGLGKRPVSIVYKGD-----------DK-PGFLKKL 197 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVR---------t~~Efe~~Ghp~lr~~~KGAinIPl~~~-----------~n-~~fl~eL 197 (451)
++++-+.+++. +++.++||-- ...||... |++ |+.++-++.. .. +.|.+..
T Consensus 7 v~~~~v~~~~~-~~~~~iLDaSw~~~~~~~~~~~e~~~~-hip------ga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~ 78 (286)
T KOG1529|consen 7 VSVKWVMENLG-NHGLRILDASWYFPPLRRIAEFEFLER-HIP------GASHFDLDIISYPSSPYRHMLPTAEHFAEYA 78 (286)
T ss_pred cChHHHHHhCc-CCCeEEEeeeeecCchhhhhhhhhhhc-cCC------CceeeeccccccCCCcccccCccHHHHHHHH
Confidence 66777777776 4678899852 23466653 443 8888876532 11 1233322
Q ss_pred hhhhCCCCCCeEEEEeC--CCc-hHHHHHHHHHHcCCCcEEEcCCCCCChhhHhhCCCCccCCC
Q 013011 198 SLKFKEPENTTLFILDK--FDG-NSELVAELVTINGFKNAYTIKDGAEGPRGWMNSGLPWIPPK 258 (451)
Q Consensus 198 ~a~lk~~KdkpIVVyC~--sG~-RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~aGLPvv~~~ 258 (451)
.++..+.++.+|||++ .|+ -|.++.-.++-.|+.+|+.|.||+ ++|+..|+|+...+
T Consensus 79 -~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~---~~Wk~~g~~~~s~~ 138 (286)
T KOG1529|consen 79 -SRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGF---RAWKAAGGPVDSSK 138 (286)
T ss_pred -HhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcH---HHHHHcCCcccccc
Confidence 3555678889999999 777 466788889999999999999999 99999999988765
No 59
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=96.73 E-value=0.004 Score=53.09 Aligned_cols=39 Identities=28% Similarity=0.501 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 013011 303 IETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLN 341 (451)
Q Consensus 303 ~e~~lq~~G~~~l~~~~~~k~l~aedrk~tl~~v~~~~~ 341 (451)
+..++|++|..-.++|++++|||+|||++..++++++-+
T Consensus 48 l~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i~~~k~ 86 (90)
T PF14159_consen 48 LPGLLELVGLGYTGWFVYRYLLFAENRQELLQKIQSLKK 86 (90)
T ss_pred hHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999998743
No 60
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=96.39 E-value=0.0073 Score=61.16 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=66.2
Q ss_pred CCCceEEEecChhhhhhc----------CCCCCCCCCCCcEEecCCCCCC-hhH---HHHHhhhh---CCCCCCeEEEEe
Q 013011 151 DASAQLLDIRAPVEFRQV----------GSPDVRGLGKRPVSIVYKGDDK-PGF---LKKLSLKF---KEPENTTLFILD 213 (451)
Q Consensus 151 ~~~avLIDVRt~~Efe~~----------Ghp~lr~~~KGAinIPl~~~~n-~~f---l~eL~a~l---k~~KdkpIVVyC 213 (451)
..+...+|-|...+|.-. ||+ +|++|+|+.+.-. +.+ .+++...+ +...++|+|+-|
T Consensus 170 ~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHI------pGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC 243 (286)
T KOG1529|consen 170 TKNFQYLDARSKGRFDGTEPEPRSGATGGHI------PGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSC 243 (286)
T ss_pred cccceeeeccccccccccCCCCcccCcCccC------CCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEee
Confidence 456899999999999642 455 4999999864211 112 12333222 235679999999
Q ss_pred CCCchHHHHHHHHHHcCCCcEEEcCCCCCChhhHhh
Q 013011 214 KFDGNSELVAELVTINGFKNAYTIKDGAEGPRGWMN 249 (451)
Q Consensus 214 ~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~~aWk~ 249 (451)
..|..+...+-.|...| .++-.+.|++ ..|..
T Consensus 244 ~~Gisa~~i~~al~r~g-~~~~lYdGS~---~Ew~~ 275 (286)
T KOG1529|consen 244 GTGISASIIALALERSG-PDAKLYDGSW---TEWAL 275 (286)
T ss_pred ccchhHHHHHHHHHhcC-CCcceecccH---HHHhh
Confidence 99999999999999999 7888899998 88875
No 61
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=95.33 E-value=0.082 Score=47.39 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=52.3
Q ss_pred cccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCC---CC----CCCCcEEecCCCC-CChhHHHHHhhhhCCCCCCe
Q 013011 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV---RG----LGKRPVSIVYKGD-DKPGFLKKLSLKFKEPENTT 208 (451)
Q Consensus 137 g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~l---r~----~~KGAinIPl~~~-~n~~fl~eL~a~lk~~Kdkp 208 (451)
+.+++.+...+-+ .+=-.+||.|+..|.+ +.|.. +. .+-.-+|+|+... .++.-+..+...+. ..++|
T Consensus 13 ~qlt~~d~~~L~~-~GiktVIdlR~~~E~~--~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~~-~~~~p 88 (135)
T TIGR01244 13 PQLTKADAAQAAQ-LGFKTVINNRPDREEE--SQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAIG-AAEGP 88 (135)
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHHH-hCCCC
Confidence 5789999877654 4556899999988754 23320 00 0113578886531 12222333332232 34689
Q ss_pred EEEEeCCCchHHHHHHHH
Q 013011 209 LFILDKFDGNSELVAELV 226 (451)
Q Consensus 209 IVVyC~sG~RS~~AAk~L 226 (451)
|+++|++|.|+..+...+
T Consensus 89 vL~HC~sG~Rt~~l~al~ 106 (135)
T TIGR01244 89 VLAYCRSGTRSSLLWGFR 106 (135)
T ss_pred EEEEcCCChHHHHHHHHH
Confidence 999999999988765543
No 62
>PLN02777 photosystem I P subunit (PSI-P)
Probab=94.99 E-value=0.042 Score=51.73 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhc
Q 013011 303 IETILQILGSAALVQFASKKLLFAEDRKQTLQQVDEFLNT 342 (451)
Q Consensus 303 ~e~~lq~~G~~~l~~~~~~k~l~aedrk~tl~~v~~~~~~ 342 (451)
+-.+||++|..=.+||+|++|+|.|||++.+++|+++-+.
T Consensus 123 lP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk~~ 162 (167)
T PLN02777 123 VPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTYKE 162 (167)
T ss_pred ccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999988544
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=94.89 E-value=0.095 Score=46.06 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=40.6
Q ss_pred cccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCC---C----CCCCCcEEecCCCC-CChhHHHHHhhhhCCCCCCe
Q 013011 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV---R----GLGKRPVSIVYKGD-DKPGFLKKLSLKFKEPENTT 208 (451)
Q Consensus 137 g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~l---r----~~~KGAinIPl~~~-~n~~fl~eL~a~lk~~Kdkp 208 (451)
+.+++++..++-+ .+=-.+|+.|+..|-. +.|.. + ..+-.-+|||+... .+++-+..+...+. ..++|
T Consensus 13 ~Q~~~~d~~~la~-~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~-~~~~P 88 (110)
T PF04273_consen 13 GQPSPEDLAQLAA-QGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE-SLPKP 88 (110)
T ss_dssp CS--HHHHHHHHH-CT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH-TTTTS
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH-hCCCC
Confidence 6799999888775 5556899999886632 11110 0 01113588997641 12222333332222 24679
Q ss_pred EEEEeCCCchHHHHHH
Q 013011 209 LFILDKFDGNSELVAE 224 (451)
Q Consensus 209 IVVyC~sG~RS~~AAk 224 (451)
|++||++|.||.....
T Consensus 89 vl~hC~sG~Ra~~l~~ 104 (110)
T PF04273_consen 89 VLAHCRSGTRASALWA 104 (110)
T ss_dssp EEEE-SCSHHHHHHHH
T ss_pred EEEECCCChhHHHHHH
Confidence 9999999999976543
No 64
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=94.19 E-value=0.06 Score=55.79 Aligned_cols=100 Identities=21% Similarity=0.269 Sum_probs=70.3
Q ss_pred CCcccCHHHHHHHhcCC-----CCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhC---CCCC
Q 013011 135 SWGVESARNAYAKLGDD-----ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFK---EPEN 206 (451)
Q Consensus 135 g~g~ISp~eA~eLLn~~-----~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk---~~Kd 206 (451)
.+..|+++.+..+++.. .+.++||-|-+.||.- |||. +++||--. ++|.-.+. ....
T Consensus 240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~G-GHIi------naVNi~s~--------~~l~~~F~hkplThp 304 (427)
T COG5105 240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRG-GHII------NAVNISST--------KKLGLLFRHKPLTHP 304 (427)
T ss_pred chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecC-ceee------eeeecchH--------HHHHHHHHhccccCc
Confidence 35779999999988521 2467999999999984 8885 89998632 12221221 1224
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHc------------CCCcEEEcCCCCCChhhHhhCCCC
Q 013011 207 TTLFILDKFD-GNSELVAELVTIN------------GFKNAYTIKDGAEGPRGWMNSGLP 253 (451)
Q Consensus 207 kpIVVyC~sG-~RS~~AAk~Lkk~------------GFknVy~L~GGieG~~aWk~aGLP 253 (451)
+-+|+.|... .|+-..|..|+.+ =|..||+|.||+ ..+-. ++|
T Consensus 305 ~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGY---k~fy~-n~p 360 (427)
T COG5105 305 RALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGY---KKFYS-NYP 360 (427)
T ss_pred eeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcH---HHHhh-cCc
Confidence 5689999876 4888888888743 356899999999 77644 344
No 65
>COG2603 Predicted ATPase [General function prediction only]
Probab=89.52 E-value=0.4 Score=49.29 Aligned_cols=80 Identities=28% Similarity=0.438 Sum_probs=51.0
Q ss_pred CCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCC----------C---h------------hHHH---HHhhhhCC
Q 013011 152 ASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDD----------K---P------------GFLK---KLSLKFKE 203 (451)
Q Consensus 152 ~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~----------n---~------------~fl~---eL~a~lk~ 203 (451)
.+.-+||||.|.||.. |+-+ +++|.|.-..+ . + +..+ ....++
T Consensus 14 ~~~~lid~rap~ef~~-g~~~------ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f-- 84 (334)
T COG2603 14 ADTPLIDVRAPIEFEN-GAMP------IAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF-- 84 (334)
T ss_pred cCCceeeccchHHHhc-ccch------hhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH--
Confidence 4678999999999997 5553 78898863200 0 0 0000 001111
Q ss_pred CCCCeEEEEeCCCc-hHHHHHHHH-HHcCCCcEEEcCCCC
Q 013011 204 PENTTLFILDKFDG-NSELVAELV-TINGFKNAYTIKDGA 241 (451)
Q Consensus 204 ~KdkpIVVyC~sG~-RS~~AAk~L-kk~GFknVy~L~GGi 241 (451)
..+.|+-++|..|+ ||...+++| ...|+.-. -+.||.
T Consensus 85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~~~-r~iGGe 123 (334)
T COG2603 85 QEENPVGILCARGGLRSKIVQKWLGYAAGIDYP-RVIGGE 123 (334)
T ss_pred HHhCCcceeeccccchhHHHHHHHHHHHHhhhh-hhhchH
Confidence 33456666687776 999999999 77787543 456888
No 66
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=86.86 E-value=2.2 Score=36.80 Aligned_cols=74 Identities=8% Similarity=-0.024 Sum_probs=40.9
Q ss_pred CCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHH-------HHHhhhhCCCCCCeEEEEeCCCc-hHHHH
Q 013011 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFL-------KKLSLKFKEPENTTLFILDKFDG-NSELV 222 (451)
Q Consensus 151 ~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl-------~eL~a~lk~~KdkpIVVyC~sG~-RS~~A 222 (451)
.+-..+||+|+..++....... -.-.|+|+.+....... +-+... ...+++|+|.|..|. ||..+
T Consensus 26 ~gi~~VI~l~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~--~~~~~~vlVHC~~G~~Rs~~~ 98 (139)
T cd00127 26 LGITHVLNVAKEVPNENLFLSD-----FNYLYVPILDLPSQDISKYFDEAVDFIDDA--REKGGKVLVHCLAGVSRSATL 98 (139)
T ss_pred cCCCEEEEcccCCCCcccCCCC-----ceEEEEEceeCCCCChHHHHHHHHHHHHHH--HhcCCcEEEECCCCCchhHHH
Confidence 4556899999988851111110 13678887643222111 112111 134689999999997 88754
Q ss_pred -H-HHHHHcCC
Q 013011 223 -A-ELVTINGF 231 (451)
Q Consensus 223 -A-k~Lkk~GF 231 (451)
+ -.+...|+
T Consensus 99 ~~~~l~~~~~~ 109 (139)
T cd00127 99 VIAYLMKTLGL 109 (139)
T ss_pred HHHHHHHHcCC
Confidence 3 33444443
No 67
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=84.69 E-value=3.4 Score=36.04 Aligned_cols=74 Identities=7% Similarity=0.013 Sum_probs=41.3
Q ss_pred CCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHH---HHHhhhh--CCCCCCeEEEEeCCCc-hHHH--H
Q 013011 151 DASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFL---KKLSLKF--KEPENTTLFILDKFDG-NSEL--V 222 (451)
Q Consensus 151 ~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl---~eL~a~l--k~~KdkpIVVyC~sG~-RS~~--A 222 (451)
.+=..+|++++..+....... .-+++|+.+....... .+...-+ ...++++|+|.|..|. ||.. +
T Consensus 25 ~gi~~Vi~l~~~~~~~~~~~~-------~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 97 (138)
T smart00195 25 LGITHVINVTNEVPNLNKKGF-------TYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLII 97 (138)
T ss_pred cCCCEEEEccCCCCCCCCCCC-------EEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHH
Confidence 445689999987653211111 3678887642111122 1111111 1256789999999996 8775 3
Q ss_pred HHHHHHcCC
Q 013011 223 AELVTINGF 231 (451)
Q Consensus 223 Ak~Lkk~GF 231 (451)
+-.+...|+
T Consensus 98 ~yl~~~~~~ 106 (138)
T smart00195 98 AYLMKYRNL 106 (138)
T ss_pred HHHHHHhCC
Confidence 334555665
No 68
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=82.27 E-value=3.8 Score=37.40 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=23.8
Q ss_pred CcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCC
Q 013011 136 WGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYK 186 (451)
Q Consensus 136 ~g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~ 186 (451)
...+|.++...+.+ -+=-.+||.|++.|.+....+... +-.-+|+|+.
T Consensus 27 l~~lt~~d~~~L~~-lgI~tIiDLRs~~E~~~~p~~~~~--g~~~~~~p~~ 74 (164)
T PF13350_consen 27 LSNLTEADLERLRE-LGIRTIIDLRSPTERERAPDPLID--GVQYVHIPIF 74 (164)
T ss_dssp -TT--HHHHHHHHH-TT--EEEE-S-HHHHHHHS----T--T-EEEE--SS
T ss_pred cCcCCHHHHHHHHh-CCCCEEEECCCccccccCCCCCcC--Cceeeeeccc
Confidence 45689998877763 556789999999999874222111 1134667764
No 69
>PLN02727 NAD kinase
Probab=78.58 E-value=7.1 Score=45.87 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=54.2
Q ss_pred cccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCC--C----CCCCCcEEecCCC--CCChhHHHHHhhhhCCCCCCe
Q 013011 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDV--R----GLGKRPVSIVYKG--DDKPGFLKKLSLKFKEPENTT 208 (451)
Q Consensus 137 g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~l--r----~~~KGAinIPl~~--~~n~~fl~eL~a~lk~~Kdkp 208 (451)
+++++++...+.+ .+=-.+|+.|+..|-. +.... + ..+-.-+|||+.. ...++.++++.+.+.....+|
T Consensus 267 gQpspe~la~LA~-~GfKTIINLRpd~E~~--q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpkP 343 (986)
T PLN02727 267 GQVTEEGLKWLLE-KGFKTIVDLRAEIVKD--NFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKP 343 (986)
T ss_pred CCCCHHHHHHHHH-CCCeEEEECCCCCcCC--CchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCCC
Confidence 6799999877765 4555799999988721 11100 0 0111468999742 223344444443442345789
Q ss_pred EEEEeCCCch--HHHHHHHHHH
Q 013011 209 LFILDKFDGN--SELVAELVTI 228 (451)
Q Consensus 209 IVVyC~sG~R--S~~AAk~Lkk 228 (451)
|+++|++|.| +..+|.++..
T Consensus 344 VLvHCKSGarRAGamvA~yl~~ 365 (986)
T PLN02727 344 IYLHSKEGVWRTSAMVSRWKQY 365 (986)
T ss_pred EEEECCCCCchHHHHHHHHHHH
Confidence 9999999994 3456677763
No 70
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=60.19 E-value=11 Score=34.47 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=24.0
Q ss_pred CCCCeEEEEeCC-----CchHHHHHHHHHHcCCCcEEEcCCCC
Q 013011 204 PENTTLFILDKF-----DGNSELVAELVTINGFKNAYTIKDGA 241 (451)
Q Consensus 204 ~KdkpIVVyC~s-----G~RS~~AAk~Lkk~GFknVy~L~GGi 241 (451)
.++..++++|-. |..-..+++.|++.|..++.+|+||-
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGg 140 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGG 140 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GG
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCc
Confidence 455566655543 56777899999999999999999997
No 71
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=56.95 E-value=16 Score=41.00 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=15.2
Q ss_pred CCCccccccCCCCCCCCCCCCchhH
Q 013011 405 SVPKTEVKADSLPRFQRSLSPYPAV 429 (451)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (451)
+++..|++....+ ..||||||++.
T Consensus 421 ~~~~~~~~~~~~~-~~~~~~~~~~~ 444 (576)
T PLN03209 421 NVPEVEPAQVEAK-KTRPLSPYARY 444 (576)
T ss_pred cCccccccccccC-CCCCCCccccc
Confidence 3444444443333 89999999863
No 72
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=56.08 E-value=9 Score=32.97 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=38.9
Q ss_pred CceEEEecChhhh---hhcCCCCCCCCCCCcEEecCCCCCCh---hHHHHHhhhhC--CCCCCeEEEEeCCCc-hHHH-H
Q 013011 153 SAQLLDIRAPVEF---RQVGSPDVRGLGKRPVSIVYKGDDKP---GFLKKLSLKFK--EPENTTLFILDKFDG-NSEL-V 222 (451)
Q Consensus 153 ~avLIDVRt~~Ef---e~~Ghp~lr~~~KGAinIPl~~~~n~---~fl~eL~a~lk--~~KdkpIVVyC~sG~-RS~~-A 222 (451)
=..+|+++.+.+. ...... .-.++|+.+.... ..+.++..-+. ..++.+|+|.|..|. ||.. +
T Consensus 19 I~~Vin~~~~~~~~~~~~~~~~-------~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 91 (133)
T PF00782_consen 19 ITHVINLQEECPNPYFYKPEGI-------EYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVA 91 (133)
T ss_dssp EEEEEECSSSSSTSHHHTTTTS-------EEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHH
T ss_pred CCEEEEccCCCcCchhcccCCC-------EEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHH
Confidence 3478999987654 111222 3577886541111 12222211111 256789999999996 7665 4
Q ss_pred HH-HHHHcCC
Q 013011 223 AE-LVTINGF 231 (451)
Q Consensus 223 Ak-~Lkk~GF 231 (451)
+. .+...|+
T Consensus 92 ~ayLm~~~~~ 101 (133)
T PF00782_consen 92 AAYLMKKNGM 101 (133)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHcCC
Confidence 44 4444555
No 73
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=52.29 E-value=14 Score=32.41 Aligned_cols=34 Identities=9% Similarity=-0.020 Sum_probs=28.7
Q ss_pred EEEEeCCC-chHHHHHHHHHHc----CCCcEEEcCCCCC
Q 013011 209 LFILDKFD-GNSELVAELVTIN----GFKNAYTIKDGAE 242 (451)
Q Consensus 209 IVVyC~sG-~RS~~AAk~Lkk~----GFknVy~L~GGie 242 (451)
|+++|..+ .||..|..++++. +-.++.+...|+.
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~ 39 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTE 39 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESS
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeec
Confidence 67899876 4999999999988 7778899999993
No 74
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=51.75 E-value=4.6 Score=45.18 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=57.4
Q ss_pred ccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHh--hhhCCCCCCeEEEEeCC
Q 013011 138 VESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLS--LKFKEPENTTLFILDKF 215 (451)
Q Consensus 138 ~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~--a~lk~~KdkpIVVyC~s 215 (451)
+||+++...+ +...++|.|...||.+ +|.. +++|+|.+. . +.-++.+. ......+.+.++++-..
T Consensus 623 rmsAedl~~~----~~l~v~d~r~~~ef~r-~~~s------~s~nip~~~-~-ea~l~~~~~l~~~~~~~~~~~v~~~~~ 689 (725)
T KOG1093|consen 623 RISAEDLIWL----KMLYVLDTRQESEFQR-EHFS------DSINIPFNN-H-EADLDWLRFLPGIVCSEGKKCVVVGKN 689 (725)
T ss_pred cccHHHHHHH----HHHHHHhHHHHHHHHH-hhcc------ccccCCccc-h-HHHHHHhhcchHhHHhhCCeEEEeccc
Confidence 4566655444 4578999999999998 5554 799999872 1 11111111 00012456677776666
Q ss_pred CchHHHHHHHHHHcCCCcEEEcCCCC
Q 013011 216 DGNSELVAELVTINGFKNAYTIKDGA 241 (451)
Q Consensus 216 G~RS~~AAk~Lkk~GFknVy~L~GGi 241 (451)
...+......+..+-|-+.-.+.+|+
T Consensus 690 ~K~~~e~~~~~~~mk~p~~cil~~~~ 715 (725)
T KOG1093|consen 690 DKHAAERLTELYVMKVPRICILHDGF 715 (725)
T ss_pred hHHHHHHhhHHHHhcccHHHHHHHHH
Confidence 66666666667777677777778888
No 75
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.49 E-value=46 Score=30.60 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=48.4
Q ss_pred cccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCC-------CCCCCcEEecCCC--CCC---hhHHHHHhhhhCCC
Q 013011 137 GVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVR-------GLGKRPVSIVYKG--DDK---PGFLKKLSLKFKEP 204 (451)
Q Consensus 137 g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr-------~~~KGAinIPl~~--~~n---~~fl~eL~a~lk~~ 204 (451)
+.+++.++.++-. .+=.-+|--|+..|= .+-|... .++---.+||... +.. ..|...+. .
T Consensus 14 gQi~~~D~~~iaa-~GFksiI~nRPDgEe--~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~-----e 85 (130)
T COG3453 14 GQISPADIASIAA-LGFKSIICNRPDGEE--PGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALD-----E 85 (130)
T ss_pred CCCCHHHHHHHHH-hccceecccCCCCCC--CCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHH-----H
Confidence 7899999877764 444568888876663 2343210 0011246788653 111 13444443 3
Q ss_pred CCCeEEEEeCCCchHHHHH
Q 013011 205 ENTTLFILDKFDGNSELVA 223 (451)
Q Consensus 205 KdkpIVVyC~sG~RS~~AA 223 (451)
-+.||+-||++|.||...-
T Consensus 86 aegPVlayCrsGtRs~~ly 104 (130)
T COG3453 86 AEGPVLAYCRSGTRSLNLY 104 (130)
T ss_pred hCCCEEeeecCCchHHHHH
Confidence 4789999999999998654
No 76
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=48.00 E-value=52 Score=28.87 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=36.1
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCCCCh-------hhHhhCCCCcc
Q 013011 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGAEGP-------RGWMNSGLPWI 255 (451)
Q Consensus 207 kpIVVyC~sG-~RS~~AAk~Lkk~GFknVy~L~GGieG~-------~aWk~aGLPvv 255 (451)
++|+++|... .||..|..+|++.+-.++.+...|+++. ...++.|+++.
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~~~~~p~a~~~l~e~Gid~~ 57 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEVSRVHPTAIEVMSEIGIDIS 57 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCCCCCCHHHHHHHHHhCCCcc
Confidence 3689999755 4999999999998655677777887542 45666777764
No 77
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=46.54 E-value=69 Score=35.87 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=11.7
Q ss_pred HhcccccCCCCCCCCcCCCc
Q 013011 355 QIGKTLLPSPANGKALPAST 374 (451)
Q Consensus 355 ~~~~~ll~~~~~~~~~~~~~ 374 (451)
+-=|-|||.-++..+.|+++
T Consensus 252 q~YqELLPKvtTQeAasaAA 271 (574)
T PF07462_consen 252 QAYQELLPKVTTQEAASAAA 271 (574)
T ss_pred HHHHHhCCCCCCCCCCCCCC
Confidence 33455788776655555543
No 78
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=45.41 E-value=33 Score=32.79 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=34.9
Q ss_pred CCCceEEEecChhhhhhcCCCCCCC----CCCCcEEecCCCCCChh------HHHHHhhhhCCCCCCeEEEEeCCCc-hH
Q 013011 151 DASAQLLDIRAPVEFRQVGSPDVRG----LGKRPVSIVYKGDDKPG------FLKKLSLKFKEPENTTLFILDKFDG-NS 219 (451)
Q Consensus 151 ~~~avLIDVRt~~Efe~~Ghp~lr~----~~KGAinIPl~~~~n~~------fl~eL~a~lk~~KdkpIVVyC~sG~-RS 219 (451)
.+-..+|=.-+..|+...+.+++-. .+-.-+|+|+.+..-++ ..++|...+ ..+++|++.|..|. |+
T Consensus 70 ~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L--~~g~~V~vHC~GGlGRt 147 (168)
T PF05706_consen 70 WGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARL--ENGRKVLVHCRGGLGRT 147 (168)
T ss_dssp TT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHH--HTT--EEEE-SSSSSHH
T ss_pred CCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHH--HcCCEEEEECCCCCCHH
Confidence 3333445566777777666665311 11124678876422222 223443333 45789999999995 76
Q ss_pred HH-HHHHHHHcC
Q 013011 220 EL-VAELVTING 230 (451)
Q Consensus 220 ~~-AAk~Lkk~G 230 (451)
.. ||..|.+.|
T Consensus 148 GlvAAcLLl~L~ 159 (168)
T PF05706_consen 148 GLVAACLLLELG 159 (168)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHc
Confidence 65 777777765
No 79
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=45.31 E-value=1.3e+02 Score=28.08 Aligned_cols=26 Identities=12% Similarity=-0.068 Sum_probs=19.3
Q ss_pred CCCCeEEEEeCCCc-hHHH-HHHHHHHc
Q 013011 204 PENTTLFILDKFDG-NSEL-VAELVTIN 229 (451)
Q Consensus 204 ~KdkpIVVyC~sG~-RS~~-AAk~Lkk~ 229 (451)
.++.+|+|.|..|. ||.. ++..|.+.
T Consensus 96 ~~g~~V~VHC~aGigRSgt~~a~yL~~~ 123 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPILVALALVEY 123 (166)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 46889999999996 7776 45555554
No 80
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=41.91 E-value=41 Score=28.60 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=28.4
Q ss_pred hHHHHHhhhhCCCCCCeEEEEeCCCchH-HHHHHHHHHcCCC
Q 013011 192 GFLKKLSLKFKEPENTTLFILDKFDGNS-ELVAELVTINGFK 232 (451)
Q Consensus 192 ~fl~eL~a~lk~~KdkpIVVyC~sG~RS-~~AAk~Lkk~GFk 232 (451)
++++.|. .++++++++-+++.++ ...++.|+++||.
T Consensus 21 e~l~~L~-----~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 21 EALDALR-----ERGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHH-----HTTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHH-----HcCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 5677775 3579999999999888 7799999999996
No 81
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=40.28 E-value=1.1e+02 Score=26.65 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhhhcccCchhHHHHHHHhcccccCCCCCCCCcCCC
Q 013011 308 QILGSAALVQFASKKLL-FAEDRKQTLQQVDEFLNTKVAPKELADDIKQIGKTLLPSPANGKALPAS 373 (451)
Q Consensus 308 q~~G~~~l~~~~~~k~l-~aedrk~tl~~v~~~~~~~ia~k~~~~ei~~~~~~ll~~~~~~~~~~~~ 373 (451)
-+|++++|..|=-+||- .+.+-=+++.+.|+- .+++-||.++-....-|+..+.-+.|+|
T Consensus 10 liIlvi~LllFGpkKLPel~r~lGk~ir~fK~a------~~~~~~e~~~~~~~~~~~~~~~~~~p~~ 70 (92)
T PRK00575 10 AILAVVVILLFGAKKLPDAARSLGKSLRIFKSE------VKEMQSDNKAEASAAAAQAPYQVATPTP 70 (92)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH------HhhhhhccccccccccccCCCccCCCCC
Confidence 34666666666666664 455555555555542 3445556554444444443333333333
No 82
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=40.02 E-value=34 Score=29.14 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=20.5
Q ss_pred CCeEEEEeCCCchHHHHHHHHH----HcCCC
Q 013011 206 NTTLFILDKFDGNSELVAELVT----INGFK 232 (451)
Q Consensus 206 dkpIVVyC~sG~RS~~AAk~Lk----k~GFk 232 (451)
.++|+++|.+|..|..+++.++ +.|++
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~ 33 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP 33 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc
Confidence 4689999999998777666665 55664
No 83
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=39.23 E-value=26 Score=39.26 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=19.3
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCchh
Q 013011 401 PQVNSVPKTEVKADSLPRFQRSLSPYPA 428 (451)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (451)
|+..+.|..+..+......+||||||+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (576)
T PLN03209 349 PEAPSPPIEEEPPQPKAVVPRPLSPYTA 376 (576)
T ss_pred CCCCCCcccccCCCCcCCCCCCCCCccc
Confidence 3334555555555666789999999985
No 84
>PRK12361 hypothetical protein; Provisional
Probab=36.81 E-value=90 Score=34.18 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=42.6
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhh---C--CCCCCeEEEEe
Q 013011 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKF---K--EPENTTLFILD 213 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~l---k--~~KdkpIVVyC 213 (451)
.++.+...+.+ .+-..+||+|.+.+........ .+-.-.++|..+...+. .+++...+ . ...+++|+|.|
T Consensus 108 ~~a~d~~~L~~-~gI~~Vldlt~E~~~~~~~~~~---~~i~yl~iPi~D~~~p~-~~~l~~a~~~i~~~~~~~~~VlVHC 182 (547)
T PRK12361 108 LFPADLEKLKS-NKITAILDVTAEFDGLDWSLTE---EDIDYLNIPILDHSVPT-LAQLNQAINWIHRQVRANKSVVVHC 182 (547)
T ss_pred CCcccHHHHHH-cCCCEEEEcccccccccccccc---cCceEEEeecCCCCCCc-HHHHHHHHHHHHHHHHCCCeEEEEC
Confidence 45566544443 4556899999533221000000 00135788876432221 12222111 1 14568999999
Q ss_pred CCCc-hHHH-HHHHHH
Q 013011 214 KFDG-NSEL-VAELVT 227 (451)
Q Consensus 214 ~sG~-RS~~-AAk~Lk 227 (451)
..|. ||.. ++.+|.
T Consensus 183 ~~G~sRSa~vv~ayLm 198 (547)
T PRK12361 183 ALGRGRSVLVLAAYLL 198 (547)
T ss_pred CCCCCcHHHHHHHHHH
Confidence 9996 7765 455554
No 85
>PHA02119 hypothetical protein
Probab=35.55 E-value=51 Score=27.60 Aligned_cols=48 Identities=21% Similarity=0.408 Sum_probs=35.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhcc------------------cCchhHHHHHHHhcccccCCC
Q 013011 317 QFASKKLLFAEDRKQTLQQVDEFLNTK------------------VAPKELADDIKQIGKTLLPSP 364 (451)
Q Consensus 317 ~~~~~k~l~aedrk~tl~~v~~~~~~~------------------ia~k~~~~ei~~~~~~ll~~~ 364 (451)
|....+-.-.|..|+-|.+|.+|+.+. |-|+|.+|=+..+|--.--++
T Consensus 9 qv~~aq~fateelkrklapvgkfvademi~~r~f~isf~~~kfp~i~~~divdylr~lgy~~~~~s 74 (87)
T PHA02119 9 QVLMAQQFATEELKRKLAPVGKFVADEMIRQRSFKISFDVAKFPAIMPKDIVDYLRSLGYDAKSDS 74 (87)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHhheeEEEeccccCCccccHHHHHHHHHccchhcccc
Confidence 344444446789999999999998543 789999999988886544333
No 86
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=35.10 E-value=51 Score=28.97 Aligned_cols=33 Identities=9% Similarity=-0.019 Sum_probs=25.8
Q ss_pred EEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCC
Q 013011 209 LFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (451)
Q Consensus 209 IVVyC~sG-~RS~~AAk~Lkk~GFknVy~L~GGi 241 (451)
|+++|... .||..|..+|++..=.++.+..-|+
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~ 34 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGT 34 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcc
Confidence 57889755 4999999999987644577788888
No 87
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=35.04 E-value=1.2e+02 Score=30.65 Aligned_cols=71 Identities=10% Similarity=0.094 Sum_probs=39.8
Q ss_pred CCCceEEEecCh----hhhhhcCCCCCCCCCCCcEEecCCCCC--Chh----HHHHHhhhhCCCCCCeEEEEeCCCc-hH
Q 013011 151 DASAQLLDIRAP----VEFRQVGSPDVRGLGKRPVSIVYKGDD--KPG----FLKKLSLKFKEPENTTLFILDKFDG-NS 219 (451)
Q Consensus 151 ~~~avLIDVRt~----~Efe~~Ghp~lr~~~KGAinIPl~~~~--n~~----fl~eL~a~lk~~KdkpIVVyC~sG~-RS 219 (451)
.+=..+|++.++ .+|+..|+- -.++|+.+.. ... |++-+...+ ..+.+|+|.|..|. |+
T Consensus 115 ~gV~~lVrlcE~~Yd~~~~~~~GI~--------~~~lpipDg~aPs~~~i~~~l~~i~~~l--~~g~~VaVHC~AGlGRT 184 (241)
T PTZ00393 115 YNVTDLVRTCERTYNDGEITSAGIN--------VHELIFPDGDAPTVDIVSNWLTIVNNVI--KNNRAVAVHCVAGLGRA 184 (241)
T ss_pred cCCCEEEECCCCCCCHHHHHHcCCe--------EEEeecCCCCCCCHHHHHHHHHHHHHHH--hcCCeEEEECCCCCCHH
Confidence 334567776442 355543442 4667765421 122 333332221 35678999999995 65
Q ss_pred HH-HHHHHHHcCC
Q 013011 220 EL-VAELVTINGF 231 (451)
Q Consensus 220 ~~-AAk~Lkk~GF 231 (451)
.. +|.+|.+.|+
T Consensus 185 Gtl~AayLI~~Gm 197 (241)
T PTZ00393 185 PVLASIVLIEFGM 197 (241)
T ss_pred HHHHHHHHHHcCC
Confidence 54 6677777776
No 88
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=34.63 E-value=63 Score=29.93 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=34.2
Q ss_pred CCCCCeEEEEeCCCch---HHHHHHHHHHcCCCcEEE--cCCCCCCh--------hhHhhCCCCccCC
Q 013011 203 EPENTTLFILDKFDGN---SELVAELVTINGFKNAYT--IKDGAEGP--------RGWMNSGLPWIPP 257 (451)
Q Consensus 203 ~~KdkpIVVyC~sG~R---S~~AAk~Lkk~GFknVy~--L~GGieG~--------~aWk~aGLPvv~~ 257 (451)
.++.++|+++|-.|++ ...+|+.|.+.||+ |.+ +.. .+.. +-+++.|.++...
T Consensus 22 ~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGP-PEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEES-SSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEec-cccCCHHHHHHHHHHHhcCCcEeec
Confidence 4678999999999874 66799999999997 433 322 1111 4566677776654
No 89
>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6.4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....
Probab=34.30 E-value=31 Score=27.48 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 013011 283 FSVTLAIAAAAGLGVLAFSEIETILQIL 310 (451)
Q Consensus 283 ~P~~~~laAavGaGl~a~~e~e~~lq~~ 310 (451)
.|-....+++.|++++-+++|..+||++
T Consensus 18 ~ps~~~~G~~~~l~lvy~TDWklIl~yv 45 (56)
T PF08997_consen 18 IPSAAAWGAAGGLALVYFTDWKLILQYV 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHTTS
T ss_pred chhHHHHhhhhhhheeeecchHhhhhhc
Confidence 4666777888899999999999999875
No 90
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=34.22 E-value=18 Score=34.14 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=39.6
Q ss_pred HhhhccChHHHHHHHHHHHHHHHHHhhhcCCCCCcccCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCC
Q 013011 103 ISFGTENPLAIAGGVTILAVPLVLSQVLNKPKSWGVESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVR 174 (451)
Q Consensus 103 i~Fi~~npvliag~va~l~l~~v~~~~~~~~kg~g~ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr 174 (451)
.+|+.+||.+++++.+.++...++- +..-+-|++.+-...+.-++- ....+.||++..-|+..|.-++|
T Consensus 29 ~~Fi~~HP~L~~~M~~~y~~~~~lm-~~spy~G~~s~~~ftv~fv~m--~~~llfDI~P~YrfEDIdvLDLR 97 (155)
T PF10777_consen 29 SSFIRNHPYLCLAMYAAYLAVAALM-YYSPYFGLGSVWGFTVFFVVM--AAFLLFDIKPRYRFEDIDVLDLR 97 (155)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHH-HhcchhhhHHHHHHHHHHHHH--HHHHHhhccceeeecccCeeEEe
Confidence 3599999999988766643222110 111111223333333333332 25789999999999876776654
No 91
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=33.80 E-value=60 Score=36.55 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=38.3
Q ss_pred HHHHhhhhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCC
Q 013011 194 LKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (451)
Q Consensus 194 l~eL~a~lk~~KdkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGi 241 (451)
.++|.+.+...-+.||||+.+.-..+...|+.|.++|| ++|.|-||=
T Consensus 505 ~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 505 RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 44555444445678999999998899999999999998 799999985
No 92
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=33.36 E-value=61 Score=30.28 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=19.2
Q ss_pred CCCCCeEEEEeCCCc-hHHHHHHHHHHc
Q 013011 203 EPENTTLFILDKFDG-NSELVAELVTIN 229 (451)
Q Consensus 203 ~~KdkpIVVyC~sG~-RS~~AAk~Lkk~ 229 (451)
..++.||+|.|..|. |...+...|++.
T Consensus 88 d~~n~PvLiHC~~G~~rTG~vvg~lRk~ 115 (164)
T PF03162_consen 88 DPRNYPVLIHCNHGKDRTGLVVGCLRKL 115 (164)
T ss_dssp -GGG-SEEEE-SSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCcchhhHHHHHHHH
Confidence 356789999999997 788777777753
No 93
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=31.78 E-value=9.9 Score=39.09 Aligned_cols=83 Identities=13% Similarity=0.087 Sum_probs=52.9
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCeEEEEeCCC--
Q 013011 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTTLFILDKFD-- 216 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~KdkpIVVyC~sG-- 216 (451)
-+++++.+.+. .....+|+|....|.. +|++ |++++|...+ ..|..-|. ..+..+++++.-..+
T Consensus 16 ~~~~~~~~~l~--~~~~~~d~rg~i~~a~-egIn------gtis~~~~~~--~~~~~~l~---~~~~~~~i~l~~~~~~~ 81 (314)
T PRK00142 16 EDPEAFRDEHL--ALCKSLGLKGRILVAE-EGIN------GTVSGTIEQT--EAYMAWLK---ADPRFADIRFKISEDDG 81 (314)
T ss_pred CCHHHHHHHHH--HHHHHcCCeeEEEEcC-CCce------EEEEecHHHH--HHHHHHHh---hCcCCCCceEEeccccC
Confidence 46677777774 3567899999999997 5554 8999997422 13333332 123456766665442
Q ss_pred ch----HHHHHHHHHHcCCC-cEE
Q 013011 217 GN----SELVAELVTINGFK-NAY 235 (451)
Q Consensus 217 ~R----S~~AAk~Lkk~GFk-nVy 235 (451)
.. +.++.+.|...|+. ++.
T Consensus 82 ~~f~~l~~~~~~eLv~~G~d~~v~ 105 (314)
T PRK00142 82 HAFPRLSVKVRKEIVALGLDDDID 105 (314)
T ss_pred CCcccceeeeeeeeeecCCCCCCC
Confidence 22 25677888888985 554
No 94
>PF12007 DUF3501: Protein of unknown function (DUF3501); InterPro: IPR021890 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are about 200 amino acids in length. The structure of protein of unknown function (YP_111841.1) from B. pseudomallei has been solved. ; PDB: 3FJV_B.
Probab=31.16 E-value=35 Score=33.27 Aligned_cols=45 Identities=27% Similarity=0.415 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHhh--hcccCchhHHHHHHHhcccccCCCCCCCC
Q 013011 324 LFAEDRKQTLQQVDEFL--NTKVAPKELADDIKQIGKTLLPSPANGKA 369 (451)
Q Consensus 324 l~aedrk~tl~~v~~~~--~~~ia~k~~~~ei~~~~~~ll~~~~~~~~ 369 (451)
++.|||...+.||.|.| +...+++++.+||..-. .|+|+..+-+|
T Consensus 42 l~FEn~~Tv~~QIQEMlriEri~~~~~I~~Ei~aYn-pLiP~~~~l~A 88 (192)
T PF12007_consen 42 LLFENRDTVRYQIQEMLRIERIFDEEGIQEEIDAYN-PLIPDGGNLKA 88 (192)
T ss_dssp EEE--HHHHHHHHHHHHHHHT--SHHHHHHHHHHHG-GGS--SSEEEE
T ss_pred EEEeChHHHHHHHHHHHHHhccCCHHHHHHHHHHhc-ccCCCCCcEEE
Confidence 47899999999999988 66688999999998765 58898877544
No 95
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=30.81 E-value=59 Score=28.28 Aligned_cols=23 Identities=4% Similarity=0.171 Sum_probs=18.4
Q ss_pred CCeEEEEeCCCchHHHHHHHHHH
Q 013011 206 NTTLFILDKFDGNSELVAELVTI 228 (451)
Q Consensus 206 dkpIVVyC~sG~RS~~AAk~Lkk 228 (451)
.++|+++|..|..|...++.++.
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~ 25 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRA 25 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 35899999999998888865553
No 96
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=30.42 E-value=54 Score=28.63 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=19.8
Q ss_pred CeEEEEeCCCchHHHHHHHHH----HcCCC
Q 013011 207 TTLFILDKFDGNSELVAELVT----INGFK 232 (451)
Q Consensus 207 kpIVVyC~sG~RS~~AAk~Lk----k~GFk 232 (451)
++|+++|.+|..|..+++.++ ++|++
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~ 31 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKD 31 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCc
Confidence 369999999998888777665 45663
No 97
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=30.21 E-value=48 Score=25.41 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=17.5
Q ss_pred eEEEEeCCC-chHHHHHHHHH----HcCCCc
Q 013011 208 TLFILDKFD-GNSELVAELVT----INGFKN 233 (451)
Q Consensus 208 pIVVyC~sG-~RS~~AAk~Lk----k~GFkn 233 (451)
+++++|.+| ..|..+++.|+ +.|+..
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~~ 31 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIEV 31 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCeE
Confidence 378999999 46666666655 446643
No 98
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=29.35 E-value=67 Score=25.87 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=17.0
Q ss_pred eEEEEeCCCchHHHHH-H----HHHHcCCC
Q 013011 208 TLFILDKFDGNSELVA-E----LVTINGFK 232 (451)
Q Consensus 208 pIVVyC~sG~RS~~AA-k----~Lkk~GFk 232 (451)
+|+++|.+|..+...+ + .+.+.|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 5899999998654433 4 44566764
No 99
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=29.06 E-value=1.7e+02 Score=30.28 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=44.2
Q ss_pred cCHHHHHHHhcCCCCceEEEecChhhhhhcCCCCCCCCCCCcEEecCC-CCCChhHHHHHhhhh-CCCCCCeEEEEeCCC
Q 013011 139 ESARNAYAKLGDDASAQLLDIRAPVEFRQVGSPDVRGLGKRPVSIVYK-GDDKPGFLKKLSLKF-KEPENTTLFILDKFD 216 (451)
Q Consensus 139 ISp~eA~eLLn~~~~avLIDVRt~~Efe~~Ghp~lr~~~KGAinIPl~-~~~n~~fl~eL~a~l-k~~KdkpIVVyC~sG 216 (451)
+...++.+.+. +.++++||+|+..+|.. ... |. +|+. +-....|...|...+ +.+.+++|++-|.+.
T Consensus 138 ~gKt~Ll~~L~-~~~~~VvDlr~~a~hrG--s~f------G~--~~~~~qpsq~~fe~~L~~~l~~~~~~~~i~~e~es~ 206 (311)
T TIGR03167 138 SGKTELLHALA-NAGAQVLDLEGLANHRG--SSF------GA--LGLGPQPSQKRFENALAEALRRLDPGRPIFVEDESR 206 (311)
T ss_pred cCHHHHHHHHh-cCCCeEEECCchHHhcC--ccc------CC--CCCCCCCchHHHHHHHHHHHHhCCCCceEEEEeCch
Confidence 67778888885 55789999999999973 221 22 2211 101234655554444 346678999999986
Q ss_pred chHH
Q 013011 217 GNSE 220 (451)
Q Consensus 217 ~RS~ 220 (451)
....
T Consensus 207 ~ig~ 210 (311)
T TIGR03167 207 RIGR 210 (311)
T ss_pred hhcc
Confidence 5433
No 100
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=28.27 E-value=1.3e+02 Score=29.47 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=26.9
Q ss_pred CCeEEEEeCCCc---hHHHHHHHHHHcCCCcEEEcCCCC
Q 013011 206 NTTLFILDKFDG---NSELVAELVTINGFKNAYTIKDGA 241 (451)
Q Consensus 206 dkpIVVyC~sG~---RS~~AAk~Lkk~GFknVy~L~GGi 241 (451)
..+|+|+|-.|+ ....+|+.|...|+.-..++.|.-
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~ 87 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDP 87 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCC
Confidence 678999998876 477899999999986333344543
No 101
>PRK10126 tyrosine phosphatase; Provisional
Probab=27.43 E-value=85 Score=28.35 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=25.9
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCC
Q 013011 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (451)
Q Consensus 207 kpIVVyC~sG-~RS~~AAk~Lkk~GFknVy~L~GGi 241 (451)
+.|+++|... .||..|..++++.+ .++.+-.-|.
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~ 37 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYH-PELKVESAGL 37 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeec
Confidence 4799999755 49999999999876 3455566676
No 102
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=27.43 E-value=96 Score=35.08 Aligned_cols=46 Identities=7% Similarity=0.153 Sum_probs=34.9
Q ss_pred HHHHHhhhhCCCCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCC
Q 013011 193 FLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (451)
Q Consensus 193 fl~eL~a~lk~~KdkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGi 241 (451)
+.+.|.... ..+.+++|+|.+-.++...++.|.+.|+ ++..+.|++
T Consensus 435 L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~~gi-~~~~~h~~~ 480 (652)
T PRK05298 435 LLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKELGI-KVRYLHSDI 480 (652)
T ss_pred HHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhhcce-eEEEEECCC
Confidence 444454322 4577899999999999999999999999 466676776
No 103
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=27.40 E-value=1.4e+02 Score=26.52 Aligned_cols=47 Identities=11% Similarity=0.023 Sum_probs=32.8
Q ss_pred EEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCCCCh-------hhHhhCCCCcc
Q 013011 209 LFILDKFD-GNSELVAELVTINGFKNAYTIKDGAEGP-------RGWMNSGLPWI 255 (451)
Q Consensus 209 IVVyC~sG-~RS~~AAk~Lkk~GFknVy~L~GGieG~-------~aWk~aGLPvv 255 (451)
|+++|... .||..|..++++.+=.++.....|+++. ..-++.|+++.
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~~~~~~~~~a~~~l~e~Gid~~ 55 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGIEAHGLNPNAVKAMKEVGIDIS 55 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCCCCCCcCHHHHHHHHHcCCCcC
Confidence 57889755 4899999999886435677778888433 34556677764
No 104
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=27.37 E-value=66 Score=27.93 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=22.8
Q ss_pred eEEEEeCCCchHHHHHHHHH----HcCCCcEEEcCCCC
Q 013011 208 TLFILDKFDGNSELVAELVT----INGFKNAYTIKDGA 241 (451)
Q Consensus 208 pIVVyC~sG~RS~~AAk~Lk----k~GFknVy~L~GGi 241 (451)
+|+++|.+|..|..+++.++ +.|+. +.....++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~ 38 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAY 38 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeH
Confidence 48999999988888777665 55763 44444444
No 105
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=27.31 E-value=86 Score=31.25 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=22.7
Q ss_pred CCeEEEEeCCCc---hHHHHHHHHHHcCCC
Q 013011 206 NTTLFILDKFDG---NSELVAELVTINGFK 232 (451)
Q Consensus 206 dkpIVVyC~sG~---RS~~AAk~Lkk~GFk 232 (451)
.++|+|+|-.|+ ....+|+.|...||+
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~~ 89 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGYE 89 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCCe
Confidence 368999998765 577899999999996
No 106
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=27.27 E-value=2.8e+02 Score=25.71 Aligned_cols=49 Identities=31% Similarity=0.394 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 013011 283 FSVTLAIAAAAGLGVLAFSEIE-----TILQILGSAALVQFASKKLLFAEDRKQTL 333 (451)
Q Consensus 283 ~P~~~~laAavGaGl~a~~e~e-----~~lq~~G~~~l~~~~~~k~l~aedrk~tl 333 (451)
+|...-++|++|+|++ ++|| |.|-+-..++|.--.+.=+-|-.=+...|
T Consensus 27 FPAlASLGAAIGLGFL--sq~EGLFi~~LlPlFA~iALlanalgW~sHRQW~Rs~l 80 (139)
T PRK13755 27 FPALASLGAAIGLGFL--SQYEGLFISTLLPLFAAIALLANALGWFSHRQWLRSAL 80 (139)
T ss_pred HHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6888999999999994 5555 55555555555554444444444444433
No 107
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=27.21 E-value=63 Score=27.38 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=22.1
Q ss_pred eEEEEeCCCchHHHHHHHHH----HcCCCcEEEcCCCC
Q 013011 208 TLFILDKFDGNSELVAELVT----INGFKNAYTIKDGA 241 (451)
Q Consensus 208 pIVVyC~sG~RS~~AAk~Lk----k~GFknVy~L~GGi 241 (451)
+|+++|.+|..|..+++.++ ++|+. +.+-..++
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~ 37 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPE 37 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecH
Confidence 38999999998777666655 55764 43344444
No 108
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=26.97 E-value=54 Score=31.49 Aligned_cols=84 Identities=21% Similarity=0.220 Sum_probs=43.3
Q ss_pred CCCCCcccCHHHHHHHhcCCCCceEEEecCh---hhhhhcCCCCCCCCCCCcEEecCCCCCChhHHHHHhhhhCCCCCCe
Q 013011 132 KPKSWGVESARNAYAKLGDDASAQLLDIRAP---VEFRQVGSPDVRGLGKRPVSIVYKGDDKPGFLKKLSLKFKEPENTT 208 (451)
Q Consensus 132 ~~kg~g~ISp~eA~eLLn~~~~avLIDVRt~---~Efe~~Ghp~lr~~~KGAinIPl~~~~n~~fl~eL~a~lk~~Kdkp 208 (451)
++.|-+.+.+.-+.-+-.-+.+..+||+=.- ++|.. ++ ..|++.+++ .++++|
T Consensus 40 GfsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~--------------~~-------~~fv~~iR~---~hP~tP 95 (178)
T PF14606_consen 40 GFSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRE--------------RL-------DGFVKTIRE---AHPDTP 95 (178)
T ss_dssp E-TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHH--------------HH-------HHHHHHHHT---T-SSS-
T ss_pred eecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHH--------------HH-------HHHHHHHHH---hCCCCC
Confidence 4455566777654333333568889998643 11110 01 146666653 367899
Q ss_pred EEEEeCCCc------------------hHHHHHHHHHHcCCCcEEEcCC
Q 013011 209 LFILDKFDG------------------NSELVAELVTINGFKNAYTIKD 239 (451)
Q Consensus 209 IVVyC~sG~------------------RS~~AAk~Lkk~GFknVy~L~G 239 (451)
|+++-.... .-..+.+.|++.|.+|+|.+.|
T Consensus 96 Illv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 96 ILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-H
T ss_pred EEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCc
Confidence 999873320 1234667788889999999976
No 109
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=25.72 E-value=83 Score=27.81 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=27.0
Q ss_pred eEEEEeCCC-chHHHHHHHHHHcCCC-cEEEcCCCC
Q 013011 208 TLFILDKFD-GNSELVAELVTINGFK-NAYTIKDGA 241 (451)
Q Consensus 208 pIVVyC~sG-~RS~~AAk~Lkk~GFk-nVy~L~GGi 241 (451)
+|+++|... .||..|..++++..-+ ++.+...|+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~ 37 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGT 37 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCC
Confidence 689999766 4999999999987543 677778888
No 110
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=25.65 E-value=88 Score=25.71 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=26.6
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCC
Q 013011 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (451)
Q Consensus 205 KdkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGi 241 (451)
.+.||+++- +.-.....+.|++.+.+++|.+ ||.
T Consensus 49 ~~~PIll~~--~~l~~~~~~~l~~~~~~~v~ii-Gg~ 82 (92)
T PF04122_consen 49 NNAPILLVN--NSLPSSVKAFLKSLNIKKVYII-GGE 82 (92)
T ss_pred cCCeEEEEC--CCCCHHHHHHHHHcCCCEEEEE-CCC
Confidence 456776655 5555888999999999999999 775
No 111
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=24.81 E-value=1.1e+02 Score=28.51 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=19.0
Q ss_pred CCCCeEEEEeCCCc-hHHHH-H-HHHHHcCC
Q 013011 204 PENTTLFILDKFDG-NSELV-A-ELVTINGF 231 (451)
Q Consensus 204 ~KdkpIVVyC~sG~-RS~~A-A-k~Lkk~GF 231 (451)
.++++|+|.|..|. ||..+ + -.|...|.
T Consensus 103 ~~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 103 SKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 56679999999995 77753 3 35555343
No 112
>PRK13530 arsenate reductase; Provisional
Probab=24.70 E-value=1.3e+02 Score=26.98 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=33.8
Q ss_pred CCeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCCCCh-------hhHhhCCCCcc
Q 013011 206 NTTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGAEGP-------RGWMNSGLPWI 255 (451)
Q Consensus 206 dkpIVVyC~sG-~RS~~AAk~Lkk~GFknVy~L~GGieG~-------~aWk~aGLPvv 255 (451)
.+.|+++|... .||..|..++++++=.++.....|++.. ..-++.|+++.
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~~~~~~~~a~~~l~e~Gi~~~ 60 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIEAHGVNPNAIKAMKEVGIDIS 60 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCCCCCCCHHHHHHHHHcCCCcC
Confidence 35799999765 4899999999876434666677787432 23445566653
No 113
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=23.94 E-value=88 Score=26.25 Aligned_cols=34 Identities=15% Similarity=0.460 Sum_probs=25.3
Q ss_pred CchhHHHHHHHhhhccChHHHHHHHHHHHHHHHH
Q 013011 93 VDASGFIDSVISFGTENPLAIAGGVTILAVPLVL 126 (451)
Q Consensus 93 ~~~~~im~~ii~Fi~~npvliag~va~l~l~~v~ 126 (451)
+|..+-.+.++.|+.+||.=++.-+.+.+.|+++
T Consensus 2 ~D~k~w~~~~v~~vAkdP~~Fl~~vll~LtPlfi 35 (74)
T PF15086_consen 2 IDVKAWASYIVEWVAKDPYEFLTTVLLILTPLFI 35 (74)
T ss_pred cchHHHHHHHHHHHHcChHHHHHHHHHHHhHHHH
Confidence 4666777888999999998777766655566654
No 114
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=23.82 E-value=1.3e+02 Score=26.64 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=27.9
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcC
Q 013011 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIK 238 (451)
Q Consensus 204 ~KdkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~ 238 (451)
-++++++++-. |+-+..++..|.+.|+++++.+.
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEE
Confidence 45777777765 88899999999999999888764
No 115
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=23.26 E-value=1e+02 Score=26.15 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=17.5
Q ss_pred eEEEEeCCCch-HHHHHH----HHHHcCCC
Q 013011 208 TLFILDKFDGN-SELVAE----LVTINGFK 232 (451)
Q Consensus 208 pIVVyC~sG~R-S~~AAk----~Lkk~GFk 232 (451)
+|+++|.+|.. |..++. .+.++|+.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~ 33 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP 33 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe
Confidence 69999999984 444344 45667874
No 116
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=22.92 E-value=1.3e+02 Score=27.24 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=25.4
Q ss_pred CeEEEEeCCC-chHHHHHHHHHHcCCCcEEEcCCCC
Q 013011 207 TTLFILDKFD-GNSELVAELVTINGFKNAYTIKDGA 241 (451)
Q Consensus 207 kpIVVyC~sG-~RS~~AAk~Lkk~GFknVy~L~GGi 241 (451)
+.|+++|... .||..|..++++.+ .++.+-..|.
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~ 37 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGV 37 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccc
Confidence 4799999755 49999999998864 2455566777
No 117
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=22.55 E-value=2e+02 Score=25.95 Aligned_cols=49 Identities=10% Similarity=0.147 Sum_probs=33.8
Q ss_pred CCCeEEEEeCCCc----hHHHHHHHHHHcCCCcEEEcCCCCCCh---hhHhhCCCC
Q 013011 205 ENTTLFILDKFDG----NSELVAELVTINGFKNAYTIKDGAEGP---RGWMNSGLP 253 (451)
Q Consensus 205 KdkpIVVyC~sG~----RS~~AAk~Lkk~GFknVy~L~GGieG~---~aWk~aGLP 253 (451)
.+-.+|++|..-. .-....+.|++.|..++.++-||.... ..|++.|..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC
Confidence 3667888888664 344577788888887777888886433 456666664
No 118
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=22.47 E-value=2.8e+02 Score=24.99 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=31.4
Q ss_pred HHHHHhhhhCCCCCCeEEEEeCCCchHH---HHHHHHHHcCCCcEEEcC
Q 013011 193 FLKKLSLKFKEPENTTLFILDKFDGNSE---LVAELVTINGFKNAYTIK 238 (451)
Q Consensus 193 fl~eL~a~lk~~KdkpIVVyC~sG~RS~---~AAk~Lkk~GFknVy~L~ 238 (451)
+.+.+......+++.+|++.+..+..-. .+-..++++||+++....
T Consensus 86 L~~~L~~~~~~~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v~l~t 134 (141)
T PRK11267 86 MITALDALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVG 134 (141)
T ss_pred HHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3344543334456788999998886544 466677899999887654
No 119
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=22.05 E-value=1e+02 Score=34.81 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=45.3
Q ss_pred CCCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCCCCh------hhHhhCCCCccCCCCccc
Q 013011 204 PENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGAEGP------RGWMNSGLPWIPPKKALG 262 (451)
Q Consensus 204 ~KdkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGieG~------~aWk~aGLPvv~~~K~~~ 262 (451)
..+..-|+||.+-...+..|++|.++|++ +..+-||++.- +.|.....++.---.+|.
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~-a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFG 291 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGIS-AGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFG 291 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCc-eEEecCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Confidence 46677899999999999999999999985 55566888544 678888888665444554
No 120
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=21.60 E-value=1.1e+02 Score=28.42 Aligned_cols=40 Identities=30% Similarity=0.398 Sum_probs=30.5
Q ss_pred CCCCeEEEEeCCCc--hHHHHHHHHHH---cCCCcEEEcCCCCCC
Q 013011 204 PENTTLFILDKFDG--NSELVAELVTI---NGFKNAYTIKDGAEG 243 (451)
Q Consensus 204 ~KdkpIVVyC~sG~--RS~~AAk~Lkk---~GFknVy~L~GGieG 243 (451)
+++..+|++|..|. .|...|++|.+ .|..++..+-||-.|
T Consensus 65 ~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G 109 (155)
T PF02590_consen 65 PPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADG 109 (155)
T ss_dssp HTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB
T ss_pred cCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCC
Confidence 57888999999996 69999999987 688899999999843
No 121
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=21.51 E-value=94 Score=32.29 Aligned_cols=36 Identities=19% Similarity=0.016 Sum_probs=27.4
Q ss_pred CcccCHHHHHHHhcC-----CCCceEEEecChhhhhhcCCCC
Q 013011 136 WGVESARNAYAKLGD-----DASAQLLDIRAPVEFRQVGSPD 172 (451)
Q Consensus 136 ~g~ISp~eA~eLLn~-----~~~avLIDVRt~~Efe~~Ghp~ 172 (451)
...+++++..+++++ +.+.++||||++. |+....++
T Consensus 276 ~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~ 316 (339)
T PRK07688 276 KEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKD 316 (339)
T ss_pred cCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcC
Confidence 456999999988832 3578999999988 88655554
No 122
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=21.04 E-value=1.5e+02 Score=24.34 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=30.8
Q ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCCcEEEcCCCC
Q 013011 205 ENTTLFILDKFDGNSELVAELVTINGFKNAYTIKDGA 241 (451)
Q Consensus 205 KdkpIVVyC~sG~RS~~AAk~Lkk~GFknVy~L~GGi 241 (451)
.+.+++++|.+-.......+.|.+.++ .++.+.|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 577899999999999999999998765 588888886
No 123
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=20.92 E-value=1.2e+02 Score=33.81 Aligned_cols=34 Identities=6% Similarity=0.038 Sum_probs=30.9
Q ss_pred hccccceecccccchhhccccHHHHHHhhhcCCC
Q 013011 57 VHGGLVLLSSVLGTGLAQALTYEEALQQSAGSSA 90 (451)
Q Consensus 57 ~~g~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~ 90 (451)
..|||||+.||++..+-+|-.+-|.+-+-+...+
T Consensus 16 ~~~~l~~~~~~~~~~~~~~~~f~~k~~~~l~~~p 49 (535)
T PRK15375 16 NDARLYIAKENTDKAYVAPEKFSSKVLTWLGKMP 49 (535)
T ss_pred cCceEEEeeCCCCeEEEchhhHHHHHHHHHhcCc
Confidence 3899999999999999999999999999887764
No 124
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=20.61 E-value=1.1e+02 Score=29.95 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=23.7
Q ss_pred eEEEEeCCCc-hHHHHHHHHHHcCCCcEEEc
Q 013011 208 TLFILDKFDG-NSELVAELVTINGFKNAYTI 237 (451)
Q Consensus 208 pIVVyC~sG~-RS~~AAk~Lkk~GFknVy~L 237 (451)
.+-++|.+.+ ||..|-..|++.|| +|...
T Consensus 3 ~~avVCasN~NRSMEAH~~L~~~G~-~V~Sf 32 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAHNVLKKAGF-NVRSF 32 (195)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEccCCCCcCHHHHHHHHHCCC-ceEee
Confidence 5788999885 89999999999999 56554
No 125
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=20.58 E-value=3.7e+02 Score=22.97 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=24.1
Q ss_pred HHHHHhhhhCCCCCC-eEEEEeCCCchHHH---HHHHHHHcCCCcEEEc
Q 013011 193 FLKKLSLKFKEPENT-TLFILDKFDGNSEL---VAELVTINGFKNAYTI 237 (451)
Q Consensus 193 fl~eL~a~lk~~Kdk-pIVVyC~sG~RS~~---AAk~Lkk~GFknVy~L 237 (451)
+.+.+.......++. .|++......+-.. +-..++++||.++...
T Consensus 78 L~~~l~~~~~~~~~~~~v~i~aD~~~~y~~vv~vl~~l~~~g~~~v~l~ 126 (130)
T PF02472_consen 78 LEARLKELKQKNPDPVRVLIRADKDAPYQDVVDVLDALREAGFTKVSLA 126 (130)
T ss_dssp HHHHHHHHCCC-TTS--EEEEE-TTS-HHHHHHHHHHHHHTT---EE-T
T ss_pred HHHHHHHhhccCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 445555443445566 78888888776554 6667789999887643
No 126
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.18 E-value=3.8e+02 Score=23.37 Aligned_cols=34 Identities=3% Similarity=0.146 Sum_probs=25.4
Q ss_pred CCCCeEEEEeCCCchH---HHHHHHHHHcCCCcEEEc
Q 013011 204 PENTTLFILDKFDGNS---ELVAELVTINGFKNAYTI 237 (451)
Q Consensus 204 ~KdkpIVVyC~sG~RS---~~AAk~Lkk~GFknVy~L 237 (451)
+++.++++-++.+..- ..+-..++++|++++...
T Consensus 82 ~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 82 NKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred CCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 4567888888887644 446678889999998653
No 127
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=20.01 E-value=2.8e+02 Score=31.19 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=31.8
Q ss_pred CCeEEEEeCCCch---HHHHHHHHHHcCCCc-EEEcCCCCCCh------hhHhhCCCCc
Q 013011 206 NTTLFILDKFDGN---SELVAELVTINGFKN-AYTIKDGAEGP------RGWMNSGLPW 254 (451)
Q Consensus 206 dkpIVVyC~sG~R---S~~AAk~Lkk~GFkn-Vy~L~GGieG~------~aWk~aGLPv 254 (451)
.++|+|+|-.|++ ...+|+.|...||+- ||. .+...+. ..|+..|.++
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~-~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCY-PKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEE-cCCCCcHHHHHHHHHHHHcCCCe
Confidence 3689999988875 567999999999963 333 3322221 3466667654
Done!