BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013012
(451 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
+VLAGG+ +L P +++ V K LLP+ ++P++ Y L L L+ I+D++++ D L
Sbjct: 7 IVLAGGSGTRLYP-ITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPL 63
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
++LAGG+ +L P V+ V K LLP+ ++P++ Y L L L+ I+D++++
Sbjct: 7 IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
++LAGG+ +L P V+ V K LLP+ ++P++ Y L L L+ I+D++++
Sbjct: 7 IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
++LAGG+ +L P V+ V K LLP+ ++P++ Y L L L+ I+D++++
Sbjct: 7 IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
++LAGG+ +L P V+ V K LLP+ ++P++ Y L L L+ I+D++++
Sbjct: 7 IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
++LAGG+ +L P V+ V K LLP+ ++P++ Y L L L+ I+D++++
Sbjct: 7 IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
++LAGG+ +L P V+ V K LLP+ ++P++ Y L L L+ I+D++++
Sbjct: 7 IILAGGSGTRLYP-VTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILII 55
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
++LAGG+ +L P V+ V + LLP+ ++P++ Y L L L+ I+D++++
Sbjct: 7 IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
++LAGG+ +L P V+ V + LLP+ ++P++ Y L L L+ I+D++++
Sbjct: 7 IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
++LAGG+ +L P V+ V + LLP+ ++P++ Y L L L+ I+D++++
Sbjct: 7 IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
++LAGG+ +L P V+ V + LLP+ ++P++ Y L L L+ I+D++++
Sbjct: 7 IILAGGSGTRLYP-VTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILII 55
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
+ ++LA G +L PL ++ PKAL+ V +P++ Y +E L+ I D+I++V
Sbjct: 27 KAIILAAGLGTRLRPL-TENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIV 78
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
+ ++LA G +L PL ++ PKAL+ V +P++ Y +E L+ I D+I++V
Sbjct: 27 KAIILAAGLGTRLRPL-TENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIV 78
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVV 56
+ +LA G+ ++L P+ PKA +P+ ++P++ Y +E L I+D+ V+V
Sbjct: 2 KAFILAAGSGERLEPITHTR-PKAFVPILSKPLIEYQIEYLRKCGIRDITVIV 53
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In
Complex With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 6 VVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
++LAGGT +L P ++K K LLPV P++ + + +L+ +I D++++
Sbjct: 28 IILAGGTGSRLYP-ITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMII 76
>pdb|2X5S|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Apo State.
pdb|2X5S|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Apo State.
pdb|2X5Z|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gdp-Mannose.
pdb|2X5Z|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gdp-Mannose.
pdb|2X60|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gtp.
pdb|2X60|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Gtp.
pdb|2X65|A Chain A, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Mannose-1-Phosphate.
pdb|2X65|B Chain B, Crystal Structure Of T. Maritima Gdp-Mannose
Pyrophosphorylase In Complex With Mannose-1-Phosphate
Length = 336
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 15/86 (17%)
Query: 4 QVVVLAGGTSKKLVPLVSKEVPKALLPV-ANRPVLSYVLEQ-LELSNIKDLIVVVEGADA 61
+ ++LAGG+ ++ PL + E PK L + N+ ++ + E+ LE + KD+IVV
Sbjct: 3 KALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVT----- 57
Query: 62 ALRVGGWISAAYVDRLHVEVATVPED 87
YV+R E+ +P++
Sbjct: 58 --------HKDYVERTKKELPELPDE 75
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex
With Glucose- 1-phosphate
Length = 297
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAAL 63
+ V G + +P +K +PK +LPV +RP++ Y +++ + I+ +I V +AL
Sbjct: 16 KAVFPVAGLGTRFLP-ATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSAL 74
Query: 64 R 64
Sbjct: 75 E 75
>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis
Udp-N-Acetylglucosamine Acyltransferase
Length = 305
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV 378
++HP+A +G +VGP+C +G ++G+ C +
Sbjct: 15 VVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKL 46
>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase From Salmonella Typhi
pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase
Complexed With Ctp
Length = 259
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 4 QVVVLAGGTSKKLVPLVSKEV---PKALLPVANRPVLSYVLEQLELSNIKDLIV 54
+ V+LAGG +L S+E PK ++ + +P+L ++++ + IKD I+
Sbjct: 4 KAVILAGGLGTRL----SEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFII 53
>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|B Chain B, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|C Chain C, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|D Chain D, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUK|A Chain A, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|B Chain B, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|C Chain C, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|D Chain D, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
Length = 281
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 9 AGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQ 43
A G + +P ++K +PK +LP+ ++P++ Y +E+
Sbjct: 9 AAGYGTRFLP-ITKTIPKEMLPIVDKPLIQYAVEE 42
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 4 QVVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVV 55
+ V+ G +++P +K +PK +LP+ ++P++ YV+ + + I ++++V
Sbjct: 10 KAVIPVAGLGTRMLP-ATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLV 60
>pdb|2VSH|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSH|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|A Chain A, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
pdb|2VSI|B Chain B, Synthesis Of Cdp-Activated Ribitol For Teichoic Acid
Precursors In Streptococcus Pneumoniae
Length = 236
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 7 VLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYVLEQLELS-NIKDLIVVVEGADAALRV 65
+LAGGT ++ +PK L + +RP+L + +E+ L +I+ ++V V
Sbjct: 7 ILAGGTGTRMG---ISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVH-------- 55
Query: 66 GGWISAA 72
G W+S A
Sbjct: 56 GDWVSHA 62
>pdb|3S4W|B Chain B, Structure Of The Fanci-Fancd2 Complex
Length = 1323
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 16 LVPLVSKEVPKALLPVANRPVLSYVLEQLELSNIKDLIVVVEGADAALRVGGWISAAYVD 75
++ ++ ++VP+ L NR ++ + +L ++ +K L +V+G D ++ IS A V+
Sbjct: 115 IIKMLFEKVPQFLFESENRDGIN--MARLIINQLKWLDRIVDGKDLTAQMMQLISVAPVN 172
Query: 76 RLHVEVATVPEDVG 89
H + ++PE +G
Sbjct: 173 LQHDFITSLPEILG 186
>pdb|2CU2|A Chain A, Crystal Structure Of Mannose-1-Phosphate
Geranyltransferase From Thermus Thermophilus Hb8
Length = 337
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 1 MDFQVVVLAGGTSKKLVPLVSKEVPKALLPV-ANRPVLSYVLEQL 44
M +V+AGG ++L PL ++ PK LP+ + +L LE+L
Sbjct: 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERL 45
>pdb|4EQY|A Chain A, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|B Chain B, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|C Chain C, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|E Chain E, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|F Chain F, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|G Chain G, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
Length = 283
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIG 390
II P A+L VGP+ ++G +G + ++ SVI H IG
Sbjct: 30 IIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIG 74
>pdb|4E6U|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.4a
Resolution (P63 Form)
Length = 265
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIG 390
II PSA + S +GP+C++G +G + V+G RIG
Sbjct: 15 IIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIG 59
>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From
Mycobacterium Tuberculosis Complex With N-Acetyl
Glucosamine 1-Phosphate
Length = 391
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQM-----GDKCSVKRS 381
++ +IHP +L +T +G C++G + + GD SV R+
Sbjct: 284 RDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRT 326
>pdb|4E6T|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|B Chain B, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|C Chain C, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
Length = 294
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 347 IIHPSAELGSKTTVGPHCMLGEGSQMGDKCSV-KRSVIGRHCRIG 390
II PSA + S +GP+C++G +G + V+G RIG
Sbjct: 44 IIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIG 88
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 348 IHPSAELGSKTTVG-----PHCMLGEGSQMGDKCSVKRSVIGRHCRIGS 391
+ P AEL ++T VG +G+GS++ V S IG +C IG+
Sbjct: 332 LRPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYVGDSEIGSNCNIGA 380
>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Acetyl Coenzyme A And
Uridine-Diphosphate-N-Acetylglucosamine
pdb|3ST8|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Coenzyme A, Glucosamine 1-Phosphate And
Uridine-Diphosphate-N- Acetylglucosamine
Length = 501
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQM-----GDKCSVKRS 381
++ +IHP +L +T +G C++G + + GD SV R+
Sbjct: 288 RDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRT 330
>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine
pdb|3D98|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis,
Ligand-Free Form
pdb|3DJ4|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine.
pdb|3DK5|A Chain A, Crystal Structure Of Apo-Glmu From Mycobacterium
Tuberculosis
Length = 495
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQM-----GDKCSVKRS 381
++ +IHP +L +T +G C++G + + GD SV R+
Sbjct: 282 RDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRT 324
>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate
Uridyltransferase (Glmu) From Mycobacterium Tuberculosis
In A Cubic Space Group
Length = 503
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 344 QNNIIHPSAELGSKTTVGPHCMLGEGSQM-----GDKCSVKRS 381
++ +IHP +L +T +G C++G + + GD SV R+
Sbjct: 290 RDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRT 332
>pdb|2PA4|A Chain A, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|B Chain B, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|C Chain C, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|D Chain D, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
Length = 323
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 5 VVVLAGGTSKKLVPLVSKEVPKALLPVANRPVLSYV 40
VVV A G + +P +K VPK LLPV + P + +
Sbjct: 15 VVVPAAGLGTRFLP-ATKTVPKELLPVVDTPGIELI 49
>pdb|2AQ9|A Chain A, Structure Of E. Coli Lpxa With A Bound Peptide That Is
Competitive With Acyl-Acp
pdb|2JF3|A Chain A, Nucleotide Substrate Binding By Udp-N-Acetylglucosamine
Acyltransferase
pdb|1LXA|A Chain A, Udp N-Acetylglucosamine Acyltransferase
pdb|2QIA|A Chain A, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
pdb|2QIV|X Chain X, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
Length = 262
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS-VIGRHCRIG 390
F I+ A +G+ +GP C++G ++G+ +K V+ H +IG
Sbjct: 7 FVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIG 57
>pdb|2JF2|A Chain A, Nucleotide Substrate Binding By Udp-n-acetylglucosamine
Acyltransferase
Length = 264
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 341 FSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRS-VIGRHCRIG 390
F I+ A +G+ +GP C++G ++G+ +K V+ H +IG
Sbjct: 9 FVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIG 59
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 329 VIGEANHLSGYNFSAQNNIIHPSAELGSKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCR 388
VIG+ + +S Y + A L + TVGP L G+++ + V V + R
Sbjct: 305 VIGDDSEISPYT-------VLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKKAR 357
Query: 389 IGSXXXXXXXXXXXXXTIGDGCSI-QGSVICS 419
+G IG G +I G++ C+
Sbjct: 358 LGKGSKAGHLSYLGDAEIGAGVNIGAGTITCN 389
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,592,391
Number of Sequences: 62578
Number of extensions: 439673
Number of successful extensions: 1017
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 81
length of query: 451
length of database: 14,973,337
effective HSP length: 102
effective length of query: 349
effective length of database: 8,590,381
effective search space: 2998042969
effective search space used: 2998042969
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)